BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780694|ref|YP_003065107.1| probable transcriptional
regulator protein, LuxR family [Candidatus Liberibacter asiaticus str.
psy62]
         (246 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040371|gb|ACT57167.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 246

 Score =  514 bits (1324), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH
Sbjct: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI
Sbjct: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW
Sbjct: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA
Sbjct: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240

Query: 241 VRNNIV 246
           VRNNIV
Sbjct: 241 VRNNIV 246


>gi|315121859|ref|YP_004062348.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495261|gb|ADR51860.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 246

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/246 (91%), Positives = 234/246 (95%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MNFE+QQVNIVLNREDEQRTS VSHLPTRSDLLARMIPLD TVS  MRMYALTEYVGASH
Sbjct: 1   MNFEMQQVNIVLNREDEQRTSIVSHLPTRSDLLARMIPLDRTVSSKMRMYALTEYVGASH 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           FLLVRWDLFQEQKLDS+VSSDWPFDLVRCM LSEKDKYYNVLQRP ELFCPVFH LPENI
Sbjct: 61  FLLVRWDLFQEQKLDSVVSSDWPFDLVRCMTLSEKDKYYNVLQRPAELFCPVFHILPENI 120

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
             P+GMDNRYC+LTFDV RIRIGLMLLFPKGRI+ +DRLWEIGLLAAYQANMFK+Y+VH 
Sbjct: 121 DLPSGMDNRYCALTFDVGRIRIGLMLLFPKGRIVSQDRLWEIGLLAAYQANMFKNYNVHL 180

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKDFELTGRE+ECLTWISEGKTSDEIAVILGISRNT+NNYIASIMRKTATKTRSGAIAYA
Sbjct: 181 GKDFELTGREIECLTWISEGKTSDEIAVILGISRNTINNYIASIMRKTATKTRSGAIAYA 240

Query: 241 VRNNIV 246
           VRNNIV
Sbjct: 241 VRNNIV 246


>gi|190890349|ref|YP_001976891.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695628|gb|ACE89713.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 248

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 161/240 (67%), Gaps = 6/240 (2%)

Query: 13  NREDEQRTSFVSH----LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++ ++Q  +F S     L  R +L+ R+  +  T      + ALTEYVGASH+LL R DL
Sbjct: 9   SKGEKQMMNFASAVAPALLPRDELIQRLHSVASTGRLQSGLRALTEYVGASHYLLARCDL 68

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGM 126
            QE  LD +VSSDWPFDLV+ +A      Y     L++  ++F P F  LPE+   P G 
Sbjct: 69  IQESGLDFVVSSDWPFDLVKDIANDLVSGYARSTELEKCMQVFQPNFALLPESAAVPEGA 128

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
             +YCSLTF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFEL
Sbjct: 129 SRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGARVDRDFEL 188

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 189 TDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|222084851|ref|YP_002543380.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722299|gb|ACM25455.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 245

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/248 (48%), Positives = 163/248 (65%), Gaps = 5/248 (2%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +I Q +     + + R +  S   +R  L+ ++  +         +  LT+YVGASH
Sbjct: 1   MDMQISQAS---KGDKDARAAAPSSAMSRDQLILQLTAVAGPAYLQSGLRVLTDYVGASH 57

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPE 118
           +LL R DL QE  LD +VSSDWPFDLVR +A    + Y     L++   LF PVF  LP+
Sbjct: 58  YLLARCDLIQESGLDFVVSSDWPFDLVRRLASELTNGYGRAGELEKSMSLFQPVFAFLPD 117

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           ++ PP G+   YC+LTF+V R R  LMLL     ++  +RL ++GLLA Y A+  +S + 
Sbjct: 118 DVEPPEGVSRHYCALTFNVGRTRFSLMLLARDSLLLSPERLRDVGLLAGYFASFTRSVEG 177

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +DF+LT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA
Sbjct: 178 KLERDFDLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 237

Query: 239 YAVRNNIV 246
           +AVRNN+V
Sbjct: 238 FAVRNNLV 245


>gi|116250468|ref|YP_766306.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255116|emb|CAK06190.1| regulator of flagellar and motility genes, also regulates rem
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 262

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 156/229 (68%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V  L  R +LL R+  +  T      + ALT+YVGASH+LL R DL QE  LD IVS
Sbjct: 34  SAVVPDLLPRDELLQRLHGVASTGRLQSGLRALTDYVGASHYLLARCDLLQESGLDFIVS 93

Query: 80  SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A      Y     L++  ++F P F  LP++   P G   +YCS+TF+V
Sbjct: 94  SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 153

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 154 GRSRLSLMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTKVDRDFELTDRELECLFWI 213

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 214 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262


>gi|82940562|emb|CAJ44291.1| putative transcription regulator protein MotR, LuxR family
           [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 155/229 (67%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V  L  R  LL R+  +  +      + ALT+YVGASH+LL R DL QE  LD IVS
Sbjct: 20  SAVVPDLLPRDKLLQRLHGVTSSGRLQSGLRALTDYVGASHYLLARCDLLQESGLDFIVS 79

Query: 80  SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A      Y     L+R  ++F P F  LP++   P G   +YCS+TF+V
Sbjct: 80  SDWPFDLVRDIANDLVRGYARSTELERCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 139

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTRVDRDFELTDRELECLFWI 199

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 200 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|262283887|gb|ACY40751.1| VisN [Rhizobium leguminosarum bv. viciae]
          Length = 262

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 156/229 (68%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V  L  R +LL R+  +  T      + ALT+YVGASH+LL R DL QE  LD IVS
Sbjct: 34  SAVVPDLLPRDELLLRLHGVASTGRLQSGLRALTDYVGASHYLLARCDLLQESGLDFIVS 93

Query: 80  SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A      Y     L++  ++F P F  LP++   P G   +YCS+TF+V
Sbjct: 94  SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 153

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 154 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTKVDRDFELTDRELECLFWI 213

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 214 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262


>gi|209547914|ref|YP_002279831.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533670|gb|ACI53605.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 248

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 155/229 (67%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V  L  R  LL R+  +  T      + ALTEYVGASH+LL R DL QE  LD IVS
Sbjct: 20  SAVVPDLLPRDQLLQRLHGVANTGRLQSGLRALTEYVGASHYLLARCDLLQESGLDFIVS 79

Query: 80  SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A      Y     L++  ++F P F  +P++   P G   +YCS+TF+V
Sbjct: 80  SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPDSADVPDGASRQYCSVTFNV 139

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTRVDRDFELTDRELECLFWI 199

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 200 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|86356298|ref|YP_468190.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280400|gb|ABC89463.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 234

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/223 (55%), Positives = 153/223 (68%), Gaps = 3/223 (1%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           LP R +L+ R+  +  T      + ALT+YVGASH+LL R DL QE  LD IVSSDWPFD
Sbjct: 13  LP-RDELVRRLHGVADTGRLQSGLRALTDYVGASHYLLARCDLIQESGLDFIVSSDWPFD 71

Query: 86  LVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           LVR +A      Y     L++  ++F P F  LPE    P G   +YCSLTF+V R R+ 
Sbjct: 72  LVRDIANDLVSTYARSTELEKCMQVFQPNFALLPEGADVPEGASRQYCSLTFNVGRSRLA 131

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI+EGKTS
Sbjct: 132 LMFLFGEGFILSPERLRDVGLLAGYIASFLRCGGAKVDRDFELTDRELECLFWIAEGKTS 191

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 192 DEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 234


>gi|241203092|ref|YP_002974188.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856982|gb|ACS54649.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 248

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 121/229 (52%), Positives = 156/229 (68%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V  L  R +LL R+  +  T      + ALT+YVGAS++LL R DL QE  LD IVS
Sbjct: 20  SAAVPDLLPRDELLQRLHGVASTGRLQSGLRALTDYVGASYYLLARCDLLQESGLDFIVS 79

Query: 80  SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A      Y     L++  ++F P F  LP++   P G   +YCS+TF+V
Sbjct: 80  SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 139

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTKVDRDFELTDRELECLFWI 199

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 200 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|15964400|ref|NP_384753.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15073577|emb|CAC45219.1| Transcriptional regulator of motility genes, LuxR family
           [Sinorhizobium meliloti 1021]
          Length = 245

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 111/221 (50%), Positives = 149/221 (67%), Gaps = 2/221 (0%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           +R  L+ R+  +         + ALTEYVGA+H+LL R D+ Q+  LD +V SDWPFD+V
Sbjct: 25  SREQLIRRLGEVASGAGLGNGLAALTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDIV 84

Query: 88  RCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           R ++  ++        L+R      P FHT+P++I  P G+   YC++TF V R R  LM
Sbjct: 85  RRLSGIIAGLHAKITELERCLAQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSLM 144

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           LLFP+  I+ ++ L +I +LA Y A+     DV   ++ ELT RE+ECL WI+EGKTSDE
Sbjct: 145 LLFPEDVILSQEALRDIAVLAGYVASHKIKADVRHDRECELTERELECLFWIAEGKTSDE 204

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVRNN+V
Sbjct: 205 IAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245


>gi|2916781|emb|CAA11948.1| unnamed protein product [Sinorhizobium meliloti]
          Length = 245

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/221 (49%), Positives = 149/221 (67%), Gaps = 2/221 (0%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           +R  L+ R+  +         + ALTEYVGA+H+LL R D+ Q+  LD +V SDWPFD+V
Sbjct: 25  SREQLIRRLGEVASGAGLGNGLAALTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDIV 84

Query: 88  RCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           R ++  ++        L++      P FHT+P++I  P G+   YC++TF V R R  LM
Sbjct: 85  RRLSGIIAGLHAKITELEKCLAQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSLM 144

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           LLFP+  I+ ++ L +I +LA Y A+     DV   ++ ELT RE+ECL WI+EGKTSDE
Sbjct: 145 LLFPEDVILSQESLRDIAVLAGYVASHKIKADVRHDRECELTERELECLFWIAEGKTSDE 204

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVRNN+V
Sbjct: 205 IAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245


>gi|307311542|ref|ZP_07591183.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318897|ref|ZP_07598328.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306895311|gb|EFN26066.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306899559|gb|EFN30188.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 210

 Score =  215 bits (547), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 108/200 (54%), Positives = 142/200 (71%), Gaps = 2/200 (1%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPT 106
           + ALTEYVGA+H+LL R D+ Q+  LD +V SDWPFD+VR ++  ++        L+R  
Sbjct: 11  LAALTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLHAKITELERCL 70

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
               P FHT+P++I  P G+   YC++TF V R R  LMLLFP+  I+ ++ L +I +LA
Sbjct: 71  AQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSLMLLFPEDVILSQEALRDIAVLA 130

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y A+     DV   ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT+NNYI S+MR
Sbjct: 131 GYVASHKIKADVRHDRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMR 190

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           KTAT+TRS AIA+AVRNN+V
Sbjct: 191 KTATRTRSEAIAHAVRNNLV 210


>gi|150395470|ref|YP_001325937.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150026985|gb|ABR59102.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 245

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 148/221 (66%), Gaps = 2/221 (0%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           +R  L+ R+  L         +  LTEYVGA+H+LL R D+ Q+  LD +V SDWPFD+V
Sbjct: 25  SREQLIRRLGELASGTGLGNGLAVLTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDIV 84

Query: 88  RCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           R ++  ++  +     L++      PVFH +P++I  P G+   YC++TF +   R  LM
Sbjct: 85  RRLSGIIAGLNSKTTELEKCRAQLQPVFHAMPDDIGLPRGVSRSYCAVTFSIGPTRFSLM 144

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           LLFP+  I+ +D L ++ +LA Y A+     DV   ++ ELT RE+ECL WI+EGKTSDE
Sbjct: 145 LLFPEDVILSQDALRDVAVLAGYVASHKIKADVRHDRECELTERELECLFWIAEGKTSDE 204

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVRNN+V
Sbjct: 205 IAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245


>gi|227820843|ref|YP_002824813.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227339842|gb|ACP24060.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 245

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/228 (49%), Positives = 149/228 (65%), Gaps = 16/228 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           +R  L+ R+       S    +  LTEYVGA+H LL R DL Q+  LD ++ SDWPFD+V
Sbjct: 25  SREQLIRRLGEAAERSSLANGLAILTEYVGATHHLLARHDLSQDGGLDFVLCSDWPFDVV 84

Query: 88  RCMA---------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           R +A          +E +K    LQ       P F  LP++I  P G++  YCS+TF+V 
Sbjct: 85  RRLASIVIGLNAKTTELEKCLAALQ-------PCFQVLPDDIDLPRGVNRSYCSVTFNVG 137

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R R  LMLLFP+  I+ ++ L +I +LA+Y A+      V   +DFELT RE+ECL WI+
Sbjct: 138 RSRFSLMLLFPEDVILSQEGLRDIAVLASYLASFKAGAGVRHDRDFELTEREIECLFWIA 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGKTS+EIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVR+N+V
Sbjct: 198 EGKTSEEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRHNLV 245


>gi|222149995|ref|YP_002550952.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736977|gb|ACM37940.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 248

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/233 (50%), Positives = 152/233 (65%), Gaps = 5/233 (2%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKLD 75
           Q+T+     P   D + R +      S  +R  M+ LT+Y GASH+LL R+DL QE  LD
Sbjct: 17  QKTANRPEGPRLRDAMIRQLS-SAASSGKLRVAMHILTDYAGASHYLLARYDLIQEHGLD 75

Query: 76  SIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V++DWPFDL R +A  LS        L++   L    F  LP+++  P G   +YCS+
Sbjct: 76  FVVTADWPFDLARGVATELSAACSRATELEKCLGLLQAKFVLLPDDLELPLGASRQYCSV 135

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
            F+V R R+ L++L P G +I  DRL ++GLLAAY  ++         +DFELT RE+EC
Sbjct: 136 MFNVGRTRLALVMLLPDGFVISPDRLRDVGLLAAYCVSLSTGRSQKADRDFELTERELEC 195

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L WI+EGKTSDEIA ILGISRNT+NNYI S+MRKTATKTRS AIAYAVRNN+V
Sbjct: 196 LFWIAEGKTSDEIATILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 248


>gi|325291913|ref|YP_004277777.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059766|gb|ADY63457.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 251

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 136/197 (69%), Gaps = 2/197 (1%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELF 109
           L  Y GASH+LL R DL +E  L  I++SDWPFDLVR +   L+      + +++   L 
Sbjct: 55  LVTYAGASHYLLAREDLLEETGLKFIITSDWPFDLVRRLGAELANSQNRSSEMEKCLSLL 114

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            P    LP++++ P G+D +Y +L+F V RIR+ L+LLFP+  +   DRL EI LL  Y 
Sbjct: 115 QPRLLVLPDDVSVPFGIDRQYSALSFCVGRIRLSLLLLFPEHSVPSPDRLREIALLTGYC 174

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +   + +    +D +LT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTA
Sbjct: 175 VSFGIASEAKAVRDIDLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTA 234

Query: 230 TKTRSGAIAYAVRNNIV 246
           TKTRS AIAYAVRNN+V
Sbjct: 235 TKTRSEAIAYAVRNNLV 251


>gi|159184353|ref|NP_353554.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159139669|gb|AAK86339.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 226

 Score =  194 bits (493), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 136/197 (69%), Gaps = 2/197 (1%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELF 109
           L  Y GASH+LL R DL +E  L  IV+SDWPFDLVR +   L+      + +++   L 
Sbjct: 30  LVTYAGASHYLLARDDLLEETGLKFIVTSDWPFDLVRRLGIELTNSQNRSSEMEKCLSLL 89

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            P    LP++++ P G+D +Y +L+F V RIR+ L+LLFP+  +   +RL EI LL  Y 
Sbjct: 90  QPRLLLLPDDVSVPYGIDRQYSALSFCVGRIRLSLLLLFPEEAVPSPERLREIALLTGYC 149

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +   + +    +D +LT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTA
Sbjct: 150 VSFGIASEAKTVRDIDLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTA 209

Query: 230 TKTRSGAIAYAVRNNIV 246
           TKTRS AIAYAVRNN+V
Sbjct: 210 TKTRSEAIAYAVRNNLV 226


>gi|218658162|ref|ZP_03514092.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 144

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/144 (58%), Positives = 107/144 (74%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           ++  ++F P F  LPE+   P G   +YCSLTF+V R R+ LM LF +G I+  +RL ++
Sbjct: 1   EKCMQVFQPNFALLPESAAVPEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDV 60

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           GLLA Y A+  +       +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI 
Sbjct: 61  GLLAGYVASFLRCGGARVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYIT 120

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 121 SVMRKTATKTRSEAIAFAVRNNLV 144


>gi|163758000|ref|ZP_02165088.1| putative GerE/LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284289|gb|EDQ34572.1| putative GerE/LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 224

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 124/204 (60%), Gaps = 15/204 (7%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELF 109
           +++Y GA  +L+ R+D + ++  D +++S+WPFDLVR +   L +     + + R    F
Sbjct: 27  ISDYTGAKCYLVARYDHYSDRHHDFVLTSNWPFDLVRNLGAGLVDAQARTSEVSRCLHAF 86

Query: 110 CPVFH-------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            P+F         LPEN++P      R C + ++V ++R+ + LLF K   +  DR+ + 
Sbjct: 87  EPLFQDVDGVAVNLPENLSP------RVCLVPYNVGKVRLLMALLFEKDAFVSHDRIRDA 140

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L A+Y A  F           +LT REVECL+WI EGKTSDEIA+I+GISRNTVNNYI 
Sbjct: 141 ALAASYHAVHFTEITTTSDSLSDLTDREVECLSWIGEGKTSDEIALIIGISRNTVNNYIT 200

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           SIM KT  KTRS A+A+AVR  I+
Sbjct: 201 SIMNKTGAKTRSEAVAFAVRQRII 224


>gi|218514697|ref|ZP_03511537.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 124

 Score =  161 bits (407), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 96/124 (77%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           P G   +YCSLTF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +
Sbjct: 1   PEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGARVDR 60

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVR
Sbjct: 61  DFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVR 120

Query: 243 NNIV 246
           NN+V
Sbjct: 121 NNLV 124


>gi|218671090|ref|ZP_03520761.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 202

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 6/185 (3%)

Query: 13  NREDEQRTSFVSH----LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++ + Q  +F S     L  R +L+ R+  +  T      + ALTEYVGASH+LL R DL
Sbjct: 9   SKGERQMINFASAVAPALLPRDELIQRLHSVASTGRLQSGLRALTEYVGASHYLLARCDL 68

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGM 126
            QE  LD +V+SDWPFDLV+ +A +    Y     L++  ++F P F  LPE+   P G 
Sbjct: 69  IQESGLDFVVASDWPFDLVKDIANNLVSGYARSTELEKCMQVFQPNFALLPESADVPEGA 128

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
             +YCSLTF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFEL
Sbjct: 129 SRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGARVDRDFEL 188

Query: 187 TGREV 191
           T RE+
Sbjct: 189 TDREL 193


>gi|218680630|ref|ZP_03528527.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 186

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 81/134 (60%), Gaps = 2/134 (1%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V+ L  R +LL R+  +  T      + ALTEYVGASH+LL R DL QE  LD IVS
Sbjct: 20  SAVVADLLPRDELLQRLHGVADTGRLQSGLRALTEYVGASHYLLARCDLLQESGLDFIVS 79

Query: 80  SDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A      Y     L++  ++F P F  +P+N   P G   +YCSLTF+V
Sbjct: 80  SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPDNADVPDGASRQYCSLTFNV 139

Query: 138 ARIRIGLMLLFPKG 151
            R R+ LM LF +G
Sbjct: 140 GRSRLALMFLFRRG 153


>gi|218509885|ref|ZP_03507763.1| LuxR family transcriptional regulator [Rhizobium etli Brasil 5]
          Length = 49

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/49 (83%), Positives = 47/49 (95%)

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 1   AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 49


>gi|260466634|ref|ZP_05812822.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029640|gb|EEW30928.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 236

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA------LSEKDKYYNVLQRP 105
           LT  +GA  ++LV     Q++    IVSS+W FD +  +       L++         RP
Sbjct: 30  LTAEIGADSYMLVAMVHDQDRNDARIVSSNWIFDAIELIGKRLIAGLAQGTLTVAPGTRP 89

Query: 106 TELFCPVFHTLPENITPPAGMDNRYC---------SLTFDVARIRIGLMLLFPKGRIILR 156
             L   V    P+     +G + R           SL  +V R R+  +        I +
Sbjct: 90  RPL---VAAQAPDADGLVSGEEARLLDVLGHAEIYSLRLNVGRQRLFALFSAASAGKIDQ 146

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
             L +  L   Y  +              L+ RE ECL W+SEGKT+DE+AVILG+S NT
Sbjct: 147 PALMKAQLKCCYALSHIPQLIAAAAMQDPLSDRERECLFWVSEGKTTDEVAVILGVSSNT 206

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VN+YI   ++K A   R+ AIA A+R+ I+
Sbjct: 207 VNSYITHAIQKFAASNRAMAIATAIRSGII 236


>gi|319781696|ref|YP_004141172.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167584|gb|ADV11122.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 236

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 107/244 (43%), Gaps = 31/244 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
           Q  +  S L +R DL           S+ M+   LT  +GA  ++LV     Q++    I
Sbjct: 9   QSDTLGSRLTSRGDL----------TSFFMQ---LTAEIGADSYMLVAIVHDQDRNDARI 55

Query: 78  VSSDWPFDLVRCMA------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           VSS+W FD +  +       L++         RP  L   V    PE      G + R  
Sbjct: 56  VSSNWIFDAIELIGKRLIAGLAQGALTVAPGIRPQPL---VASRAPEADGLVTGEEARLL 112

Query: 132 ---------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                    SL  +V R R+  +        I +  L    L   Y  +           
Sbjct: 113 DVLGHAEIYSLRLNVGRQRLFALFSAATAGSIDQPALMRAQLKCCYALSHIPQLIAAAAM 172

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE ECL W+SEGKT+DE+AVILG+S NTVN+YI   ++K A   R+ AIA A+R
Sbjct: 173 QDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIR 232

Query: 243 NNIV 246
           + I+
Sbjct: 233 SGII 236


>gi|13472561|ref|NP_104128.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023307|dbj|BAB49914.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 265

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 18/210 (8%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM------ALSEKDKYYNVLQRP 105
           LT  +GA  ++LV     Q++    IVSS+W FD +  +      +L++         RP
Sbjct: 59  LTAEIGADSYMLVAIVHDQDRNDARIVSSNWIFDAIELIGKRLIASLAQGALTVAPGIRP 118

Query: 106 TELFCPVFHTLPENITPPAGMDNRYC---------SLTFDVARIRIGLMLLFPKGRIILR 156
             L   V    P+     +G + R           SL  +V R R+  +        I +
Sbjct: 119 RPL---VAARAPDADGLVSGEEARLLDVLGHAEIYSLRLNVGRQRLFALFSAATSGQIDQ 175

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
             L +  L   Y  +              L+ RE ECL W+SEGKT+DE+AVILG+S NT
Sbjct: 176 PALMKAQLKCCYALSHIPQLIAAAAMQDPLSDRERECLFWVSEGKTTDEVAVILGVSSNT 235

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VN+YI   ++K A   R+ AIA A+R+ I+
Sbjct: 236 VNSYITHAIQKFAASNRAMAIATAIRSGII 265


>gi|15966467|ref|NP_386820.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075738|emb|CAC47293.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
          Length = 247

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 20/215 (9%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           M  L    G +HF++ R  L  EQ+  + +V S+WP +LV+     E  +   +++R  +
Sbjct: 36  MRRLISRYGFAHFMIARLPLADEQRFSERLVLSNWPAELVQQYDAGETFQTSELVERLRQ 95

Query: 108 LFCPVFHTLPENITPPAGMDNR--YCSLTFDVARIRIGLMLLFPKGRIIL---------- 155
              PV    PE + P      +  +  L          ++L    G   +          
Sbjct: 96  TKLPVTGG-PELMEPAGKGAGKAAFIRLPPHAGMGHFAVLLHTTYGEPFVAVLSGTRDEP 154

Query: 156 ----RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
               R  L+ + LL  ++  + +++D   G   +L+ REVECL W + GK+SDEIA+ILG
Sbjct: 155 AGAERATLY-LALLQLFEC-LERTFDAGSGAREKLSSREVECLRWAAAGKSSDEIAIILG 212

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV++Y  S  RK     R  AIA A+R  ++
Sbjct: 213 ISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247


>gi|150397799|ref|YP_001328266.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150029314|gb|ABR61431.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 247

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 18/234 (7%)

Query: 30  SDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDL 86
           +D+L  + P      + +   M  L    G +HF++ R  +  EQ+  + ++ S+WP +L
Sbjct: 15  TDMLFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQRFSERLMLSNWPAEL 74

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF----DVARIRI 142
           V+    SE  +   +++R  +   P+    PE + P      +  ++      D+A   +
Sbjct: 75  VQQYDASETFQASLLIERLRQTKLPIAGG-PELMEPARKGAGKAPAILLPPHADMAHFAV 133

Query: 143 GLMLLFPKGRIIL----RDRL--WEIGLLAAYQANMF----KSYDVHWGKDFELTGREVE 192
            L   + +  +++    RD     E   L      +F    +++D   G   +L+ RE+E
Sbjct: 134 LLHTTYGEPFVVVLSGKRDEPAGGERATLYLALVQLFECLERTFDAGSGAREKLSSREIE 193

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GK+SDEIA+ILGIS  TV++Y  S  RK     R  AIA A+R  ++
Sbjct: 194 CLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247


>gi|307300496|ref|ZP_07580276.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318361|ref|ZP_07597796.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306896043|gb|EFN26794.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904662|gb|EFN35246.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 321

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 22/216 (10%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           M  L    G +HF++ R  L  EQ+  + +V S+WP +LV+     E  +   +++R  +
Sbjct: 110 MRRLISRYGFAHFMIARLPLADEQRFSERLVLSNWPAELVQQYDAGETFQTSELVERLRQ 169

Query: 108 LFCPVFHTLPENITPPAGMDN---RYCSLTFDVARIRIGLMLLFPKGRIIL--------- 155
              PV  T    +  PAG       +  L          ++L    G   +         
Sbjct: 170 TKLPV--TGGPELMEPAGKGAGKAAFIRLPPHAGMGHFAVLLHTTYGEPFVAVLSGTRDE 227

Query: 156 -----RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                R  L+ + LL  ++  + +++D   G   +L+ REVECL W + GK+SDEIA+IL
Sbjct: 228 PAGAERATLY-LALLQLFEC-LERTFDAGSGAREKLSSREVECLRWAAAGKSSDEIAIIL 285

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GIS  TV++Y  S  RK     R  AIA A+R  ++
Sbjct: 286 GISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 321


>gi|163760319|ref|ZP_02167402.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162282718|gb|EDQ33006.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 208

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 7/103 (6%)

Query: 151 GRIILRDR----LWEIGLLAAYQANMFKSY-DVHWGKDF--ELTGREVECLTWISEGKTS 203
           G I+LR+R      E+ L+A   + +F+ Y +V    D    L+ RE++ ++W SEGKTS
Sbjct: 105 GLILLRNRERPLHSEVALIAYDASIVFQRYFEVVLSLDSISGLSEREIQIVSWTSEGKTS 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA+ILG+S +TVN+YIA+I+RK     R+  +A A+RN ++
Sbjct: 165 SEIAIILGLSEHTVNSYIAAILRKLQVVNRAQMVASALRNGLI 207


>gi|330831695|ref|YP_004394647.1| LuxR family transcriptional regulator [Aeromonas veronii B565]
 gi|328806831|gb|AEB52030.1| Transcriptional regulator, LuxR family [Aeromonas veronii B565]
          Length = 258

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 42/62 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE ECL W SEGKTS EIA ILGIS  TVN ++  +  KT +K RS AIA  + + 
Sbjct: 182 ELSDREKECLFWASEGKTSWEIATILGISERTVNFHLTQVTNKTDSKNRSQAIAKGITSG 241

Query: 245 IV 246
           I+
Sbjct: 242 II 243


>gi|59940149|gb|AAX12613.1| LuxR-type transcriptional regulator [Aeromonas sp. 1m]
          Length = 260

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLVWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|117619760|ref|YP_858670.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561167|gb|ABK38115.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 203

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE ECL W SEGKTS EIA ILGIS  TVN ++  +  KT +K R+ AIA ++ + 
Sbjct: 127 ELSDREKECLFWASEGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSG 186

Query: 245 IV 246
           I+
Sbjct: 187 II 188


>gi|145301148|ref|YP_001143989.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853920|gb|ABO92241.1| transcriptional regulator, LuxR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 260

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE ECL W SEGKTS EIA ILGIS  TVN ++  +  KT +K R+ AIA ++ + 
Sbjct: 184 ELSDREKECLFWASEGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSG 243

Query: 245 IV 246
           I+
Sbjct: 244 II 245


>gi|59940143|gb|AAX12610.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKD  LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  
Sbjct: 179 GKD-PLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 237

Query: 241 VRNNIV 246
           V   ++
Sbjct: 238 VSTGLL 243


>gi|66277270|gb|AAY44566.1| LuxR-like protein [Aeromonas sp. ym3]
          Length = 260

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|66277274|gb|AAY44568.1| LuxR-like protein [Aeromonas sp. CCRC 13880]
          Length = 260

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940145|gb|AAX12611.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 21725]
          Length = 260

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940071|gb|AAX12574.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940073|gb|AAX12575.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940077|gb|AAX12577.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
 gi|59940085|gb|AAX12581.1| LuxR-type transcriptional regulator [Aeromonas sp. AE-51]
 gi|59940087|gb|AAX12582.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940099|gb|AAX12588.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-24]
 gi|59940113|gb|AAX12595.1| LuxR-type transcriptional regulator [Aeromonas jandaei]
          Length = 260

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|330828294|ref|YP_004391246.1| LuxR-like protein [Aeromonas veronii B565]
 gi|328803430|gb|AEB48629.1| LuxR-like protein [Aeromonas veronii B565]
          Length = 268

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKD  LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  
Sbjct: 187 GKD-PLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 245

Query: 241 VRNNIV 246
           V   ++
Sbjct: 246 VSTGLL 251


>gi|59940109|gb|AAX12593.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-46]
          Length = 260

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940127|gb|AAX12602.1| LuxR-type transcriptional regulator [Aeromonas sp. Manipal A1]
 gi|59940139|gb|AAX12608.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940153|gb|AAX12615.1| LuxR-type transcriptional regulator [Aeromonas sp. 12m]
 gi|59940161|gb|AAX12619.1| LuxR-type transcriptional regulator [Aeromonas sp. 19m]
          Length = 260

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940069|gb|AAX12573.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKD  LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  
Sbjct: 179 GKD-PLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 237

Query: 241 VRNNIV 246
           V   ++
Sbjct: 238 VSTGLL 243


>gi|59940151|gb|AAX12614.1| LuxR-type transcriptional regulator [Aeromonas sp. 11m]
          Length = 260

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940047|gb|AAX12562.1| LuxR-type transcriptional regulator [Aeromonas jandaei]
 gi|59940057|gb|AAX12567.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
 gi|59940079|gb|AAX12578.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940147|gb|AAX12612.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 70363]
          Length = 260

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940095|gb|AAX12586.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940097|gb|AAX12587.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|89027173|gb|ABD59317.1| AhyR [Aeromonas hydrophila]
          Length = 260

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940157|gb|AAX12617.1| LuxR-type transcriptional regulator [Aeromonas sp. 15m]
          Length = 260

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940081|gb|AAX12579.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940101|gb|AAX12589.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940163|gb|AAX12620.1| LuxR-type transcriptional regulator [Aeromonas sp. 26m]
          Length = 260

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940091|gb|AAX12584.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940093|gb|AAX12585.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|88859162|ref|ZP_01133803.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2]
 gi|88819388|gb|EAR29202.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2]
          Length = 233

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 55/96 (57%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G ++L  +   +L++  ++  ++  Y  + FK       K    T RE+ECL W +EGKT
Sbjct: 130 GCLILRTENNKLLKEEHFKSIVIVIYMYDAFKRCKKKSNKTVNFTKREIECLKWATEGKT 189

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           S EI+ IL I+  TVN +IA+ +RKT +  R  AIA
Sbjct: 190 SWEISKILTITDRTVNYHIANCIRKTNSSNRQQAIA 225


>gi|59940075|gb|AAX12576.1| LuxR-type transcriptional regulator [Aeromonas caviae]
          Length = 260

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940103|gb|AAX12590.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-30]
 gi|59940105|gb|AAX12591.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940131|gb|AAX12604.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940111|gb|AAX12594.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940089|gb|AAX12583.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940135|gb|AAX12606.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|66277264|gb|AAY44563.1| LuxR-like protein [Aeromonas sp. SF8-170]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|66277278|gb|AAY44570.1| LuxR-like protein [Aeromonas sp. CCRC 13980]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|66277276|gb|AAY44569.1| LuxR-like protein [Aeromonas sp. CCRC 13881]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940063|gb|AAX12570.1| LuxR-type transcriptional regulator [Aeromonas popoffii]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|66277282|gb|AAY44572.1| LuxR-like protein [Aeromonas popoffii]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|145300631|ref|YP_001143472.1| transcriptional activator AsaR [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|61218504|sp|P0A3J5|AHYR_AERHY RecName: Full=Transcriptional activator protein AhyR/AsaR
 gi|61218505|sp|P0A3J6|AHYR_AERSA RecName: Full=Transcriptional activator protein AhyR/AsaR
 gi|899145|emb|CAA61654.1| AhyR [Aeromonas hydrophila]
 gi|1519237|gb|AAB70018.1| transcriptional activator [Aeromonas salmonicida]
 gi|142853403|gb|ABO91724.1| transcriptional activator AsaR [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940045|gb|AAX12561.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940125|gb|AAX12601.1| LuxR-type transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida]
 gi|59940159|gb|AAX12618.1| LuxR-type transcriptional regulator [Aeromonas sp. 17m]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|66277272|gb|AAY44567.1| LuxR-like protein [Aeromonas sp. ym4]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940115|gb|AAX12596.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940061|gb|AAX12569.1| LuxR-type transcriptional regulator [Aeromonas encheleia]
 gi|59940121|gb|AAX12599.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940133|gb|AAX12605.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940123|gb|AAX12600.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
 gi|59940137|gb|AAX12607.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|117618881|ref|YP_855090.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560288|gb|ABK37236.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 261

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 184 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 243

Query: 246 V 246
           +
Sbjct: 244 L 244


>gi|59940117|gb|AAX12597.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|66277256|gb|AAY44559.1| LuxR-like protein [Aeromonas caviae]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTERETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940067|gb|AAX12572.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940029|gb|AAX12553.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 261

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 184 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 243

Query: 246 V 246
           +
Sbjct: 244 L 244


>gi|59940033|gb|AAX12555.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|66277254|gb|AAY44558.1| LuxR-like protein [Aeromonas caviae]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTERETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940031|gb|AAX12554.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940035|gb|AAX12556.1| LuxR-type transcriptional regulator [Aeromonas caviae]
          Length = 260

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940037|gb|AAX12557.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940049|gb|AAX12563.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. veronii]
          Length = 260

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|294055674|ref|YP_003549332.1| transcriptional regulator, LuxR family [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615007|gb|ADE55162.1| transcriptional regulator, LuxR family [Coraliomargarita
           akajimensis DSM 45221]
          Length = 269

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           G+DN +C++    +R  I    +  KG         E  LL A QA++  +  + W +  
Sbjct: 117 GIDN-HCAVHVPSSRNEINFFGIERKGGPDFTSE--EKALLEAAQAHLTNARALAWERSL 173

Query: 185 E--------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                          LT RE E L+W++EGK++ EIA+++GIS   VN++I +I  KT T
Sbjct: 174 SNHSPINPEKLAQHGLTTRESEILSWLAEGKSNGEIAILMGISSYRVNDHIQAIHTKTNT 233

Query: 231 KTRSGAIAYAVRNN 244
            +R  A  +A+R N
Sbjct: 234 PSRPAAALWAIRAN 247


>gi|59940141|gb|AAX12609.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKD  LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  
Sbjct: 179 GKD-PLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKE 237

Query: 241 VRNNIV 246
           V   ++
Sbjct: 238 VSTGLL 243


>gi|59940083|gb|AAX12580.1| LuxR-type transcriptional regulator [Aeromonas schubertii]
          Length = 260

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSAI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940053|gb|AAX12565.1| LuxR-type transcriptional regulator [Aeromonas schubertii]
          Length = 260

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W S GKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + N I
Sbjct: 183 LTDRETECLFWASRGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAMGISNGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|66277280|gb|AAY44571.1| LuxR-like protein [Aeromonas caviae]
          Length = 258

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I
Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240

Query: 246 V 246
           +
Sbjct: 241 L 241


>gi|59940107|gb|AAX12592.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
          Length = 258

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I
Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240

Query: 246 V 246
           +
Sbjct: 241 L 241


>gi|66277284|gb|AAY44573.1| LuxR-like protein [Aeromonas veronii bv. sobria]
          Length = 258

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I
Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240

Query: 246 V 246
           +
Sbjct: 241 L 241


>gi|66277258|gb|AAY44560.1| LuxR-like protein [Aeromonas veronii]
          Length = 258

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I
Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240

Query: 246 V 246
           +
Sbjct: 241 L 241


>gi|59940065|gb|AAX12571.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 258

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I
Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240

Query: 246 V 246
           +
Sbjct: 241 L 241


>gi|59940119|gb|AAX12598.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 258

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I
Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240

Query: 246 V 246
           +
Sbjct: 241 L 241


>gi|66736599|gb|AAY54303.1| quorum sensing trancriptional regulator [Aeromonas veronii]
          Length = 258

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I
Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240

Query: 246 V 246
           +
Sbjct: 241 L 241


>gi|66277260|gb|AAY44561.1| LuxR-like protein [Aeromonas veronii]
          Length = 258

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I
Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240

Query: 246 V 246
           +
Sbjct: 241 L 241


>gi|59940043|gb|AAX12560.1| LuxR-type transcriptional regulator [Aeromonas sobria]
          Length = 258

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I
Sbjct: 181 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 240

Query: 246 V 246
           +
Sbjct: 241 L 241


>gi|59940129|gb|AAX12603.1| LuxR-type transcriptional regulator [Aeromonas sp. ABJ]
          Length = 260

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSCGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940051|gb|AAX12564.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + +
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIANGVSSGM 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|306021776|gb|ADM80305.1| LuxR [Aeromonas sobria]
          Length = 237

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I
Sbjct: 163 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGI 222

Query: 246 V 246
           +
Sbjct: 223 L 223


>gi|222149185|ref|YP_002550142.1| transcriptional regulator protein [Agrobacterium vitis S4]
 gi|221736170|gb|ACM37133.1| transcriptional regulator protein [Agrobacterium vitis S4]
          Length = 243

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 33/187 (17%)

Query: 69  FQEQKLDSIVSSDWPF---DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
           FQ+  +  IVSS+  F   D  + + +S  +K+  ++ +  E F     TLP        
Sbjct: 80  FQDPAIRHIVSSEPSFVWSDFSKTLPISRDEKW--LMDQAKEFFVSNGFTLP-----ILS 132

Query: 126 MDNRYCSLTF------DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +D R   +TF      D  + R G+ L+     +  R        L  Y AN  ++    
Sbjct: 133 LDGRRAGVTFAGSDIDDSPQARTGMALI--ASLVFAR-------ALELYGANQKQTT--- 180

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE E + WI+ GKT  EI+VI G+S   V  ++ +IM K    +RS AIA 
Sbjct: 181 -----RLTPREREVIGWIANGKTDWEISVIFGVSEKAVTKHVGNIMMKLGAVSRSHAIAE 235

Query: 240 AVRNNIV 246
           A R  ++
Sbjct: 236 AFRQKLI 242


>gi|59940059|gb|AAX12568.1| LuxR-type transcriptional regulator [Aeromonas allosaccharophila]
          Length = 260

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TV  ++  + RKT + TR  AIA  V + I
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVIYHLNQVTRKTGSMTRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|328542023|ref|YP_004302132.1| transcriptional regulator, LuxR family [polymorphum gilvum
           SL003B-26A1]
 gi|326411773|gb|ADZ68836.1| Transcriptional regulator, LuxR family [Polymorphum gilvum
           SL003B-26A1]
          Length = 239

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +GL A          D  W     LT RE+ECL W++ GKTS EI+ +LGISR+T + Y+
Sbjct: 155 VGLYAYDHVRALSQGDPAWSAG-TLTPRELECLKWVAAGKTSWEISQVLGISRHTADWYL 213

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           A  +RK     R+ A+A A R  ++
Sbjct: 214 AEAVRKLGAANRTHAVAEAFRRAMI 238


>gi|66277266|gb|AAY44564.1| LuxR-like protein [Aeromonas sp. ym1]
          Length = 260

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V    
Sbjct: 183 LTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGVSTGH 242

Query: 246 V 246
           V
Sbjct: 243 V 243


>gi|66277268|gb|AAY44565.1| LuxR-like protein [Aeromonas sp. ym2]
          Length = 260

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS +IA ILGI+  TVN ++  + RKT +  R  AIA  V   I
Sbjct: 183 LTDRETECLFWASEGKTSGDIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSRGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|59940041|gb|AAX12559.1| LuxR-type transcriptional regulator [Aeromonas eucrenophila]
          Length = 260

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 37/56 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V
Sbjct: 183 LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGV 238


>gi|66277262|gb|AAY44562.1| LuxR-like protein [Aeromonas sp. SF6-7]
          Length = 260

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V    
Sbjct: 183 LTERETECLFWASEGKTSSEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSTGH 242

Query: 246 V 246
           V
Sbjct: 243 V 243


>gi|222147695|ref|YP_002548652.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221734683|gb|ACM35646.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 230

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 44/61 (72%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+ECLTW + GKTS EIA I+G+S +T+N+Y+    RK  T  R+ A+A A+R ++
Sbjct: 169 LTEREIECLTWTAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSL 228

Query: 246 V 246
           +
Sbjct: 229 I 229


>gi|46370360|gb|AAS89968.1| transcriptional regulator [Agrobacterium vitis]
          Length = 230

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 44/61 (72%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+ECLTW + GKTS EIA I+G+S +T+N+Y+    RK  T  R+ A+A A+R ++
Sbjct: 169 LTEREIECLTWTAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSL 228

Query: 246 V 246
           +
Sbjct: 229 I 229


>gi|170745593|ref|YP_001776815.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170752150|ref|YP_001783296.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659247|gb|ACB28299.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659277|gb|ACB28328.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 248

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE ECL W S GK++ EI VIL IS  TV +++ S +RK  + TR+ A+A A+R +I
Sbjct: 187 LTGREAECLKWSSTGKSAWEIGVILSISTRTVEHHLGSAVRKLNSVTRTQAVAEALRRHI 246

Query: 246 V 246
           +
Sbjct: 247 I 247


>gi|190890329|ref|YP_001976871.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695608|gb|ACE89693.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 234

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + W SEGKTS EIA+ILG+S +TVN++I +  RK     R   +A A+RN +
Sbjct: 173 LTQREAEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232

Query: 246 V 246
           V
Sbjct: 233 V 233


>gi|59940039|gb|AAX12558.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W S+GKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTERETECLFWASDGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKRVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|218461489|ref|ZP_03501580.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 234

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + W SEGKTS EIA+ILG+S +TVN++I +  RK     R   +A A+RN +
Sbjct: 173 LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232

Query: 246 V 246
           V
Sbjct: 233 V 233


>gi|116250449|ref|YP_766287.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255097|emb|CAK06171.1| putative GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 234

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + W SEGKTS EIA+ILG+S +TVN++I +  RK     R   +A A+RN +
Sbjct: 173 LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232

Query: 246 V 246
           V
Sbjct: 233 V 233


>gi|86356279|ref|YP_468171.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280381|gb|ABC89444.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 234

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + W SEGKTS EIA+ILG+S +TVN++I +  RK     R   +A A+RN +
Sbjct: 173 LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232

Query: 246 V 246
           V
Sbjct: 233 V 233


>gi|241203072|ref|YP_002974168.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856962|gb|ACS54629.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 234

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + W SEGKTS EIA+ILG+S +TVN++I +  RK     R   +A A+RN +
Sbjct: 173 LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232

Query: 246 V 246
           V
Sbjct: 233 V 233


>gi|282866538|ref|ZP_06275581.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282558585|gb|EFB64144.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 220

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R  +  IG  AA           H G   EL+GREVE L  ++EG+++  I V +G+S  
Sbjct: 129 RPGMAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +++A I RK  T  R+G +A A+R  I+
Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|320007816|gb|ADW02666.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 220

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R  +  IG  AA           H G   EL+GREVE L  ++EG+++  I V +G+S  
Sbjct: 129 RPGMAPIGANAARMHRRPPGTPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +++A I RK  T  R+G +A A+R  I+
Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|209547895|ref|YP_002279812.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533651|gb|ACI53586.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 234

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + W SEGKTS EIA+ILG+S +TVN++I +  RK     R   +A A+RN +
Sbjct: 173 LTQREQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232

Query: 246 V 246
           V
Sbjct: 233 V 233


>gi|218662807|ref|ZP_03518737.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 102

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + W SEGKTS EIA+ILG+S +TVN++I +  RK     R   +A A+RN +
Sbjct: 41  LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 100

Query: 246 V 246
           V
Sbjct: 101 V 101


>gi|218678644|ref|ZP_03526541.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 172

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + W SEGKTS EIA+ILG+S +TVN++I +  RK     R   +A A+RN +
Sbjct: 111 LTQREQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 170

Query: 246 V 246
           V
Sbjct: 171 V 171


>gi|239945114|ref|ZP_04697051.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991577|ref|ZP_04712241.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448577|ref|ZP_06587967.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351524|gb|EFE78428.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 220

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R  +  IG  AA           H G   EL+GREVE L  ++EG+++  I V +G+S  
Sbjct: 129 RPGVAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +++A I RK  T  R+G +A A+R  I+
Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|182435268|ref|YP_001822987.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326775907|ref|ZP_08235172.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178463784|dbj|BAG18304.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656240|gb|EGE41086.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 220

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R  +  IG  AA           H G   EL+GREVE L  ++EG+++  I V +G+S  
Sbjct: 129 RPGVAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +++A I RK  T  R+G +A A+R  I+
Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|29828772|ref|NP_823406.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29605877|dbj|BAC69941.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 220

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R     IG  AA           H G   EL+GREVE L  ++EG+++  I V +G+S  
Sbjct: 129 RPGAAPIGSAAARMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +++A I RK  T  R+G +A A+R  I+
Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|218515768|ref|ZP_03512608.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 234

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + + W SEGKTS EIA+ILG+S +TVN++I +  RK     R   +A A+RN +
Sbjct: 173 LTQREADIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232

Query: 246 V 246
           V
Sbjct: 233 V 233


>gi|218663810|ref|ZP_03519740.1| hypothetical protein RetlI_33506 [Rhizobium etli IE4771]
          Length = 253

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE EC+ W++ GK+S +I  ILGIS+NTV+ +I ++MRK  T +R+ A   A    I
Sbjct: 191 LSGRERECIAWVARGKSSSDIGTILGISKNTVDFHIKNVMRKLDTASRTVAAITAATLGI 250

Query: 246 V 246
           +
Sbjct: 251 I 251


>gi|163758447|ref|ZP_02165535.1| putative LuxR/GerE family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284736|gb|EDQ35019.1| putative LuxR/GerE family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 245

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE ECL W S GKTS EIA IL +S +TVN+Y+ +  RK     R+ A+A A+R
Sbjct: 181 DSPLTERERECLVWTSSGKTSVEIARILSLSEHTVNHYLNNAARKLDAVNRTQAVALAIR 240

Query: 243 NNIV 246
              +
Sbjct: 241 QGFI 244


>gi|239983037|ref|ZP_04705561.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291454869|ref|ZP_06594259.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357818|gb|EFE84720.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 220

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R     IG  AA           H G   EL+GREVE L  ++EG+++  I V +G+S  
Sbjct: 129 RPGAAPIGSAAARMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +++A I RK  T  R+G +A A+R  I+
Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|237807075|ref|YP_002891515.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187]
 gi|237499336|gb|ACQ91929.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187]
          Length = 254

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 38/53 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+GRE ECL W+SEGKTS EIA ILGI+  TVN ++ + +RK+  K R   +A
Sbjct: 173 LSGREKECLFWVSEGKTSWEIAQILGITERTVNFHLNNAIRKSGCKNRYQTVA 225


>gi|260461224|ref|ZP_05809472.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319785401|ref|YP_004144877.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032761|gb|EEW34024.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317171289|gb|ADV14827.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 248

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++++ RE EC+ WIS+GKTS EI  ILG S+NTV+ ++ ++MRK  T  R+   A AV  
Sbjct: 184 YKISDRERECIHWISKGKTSGEIGTILGRSQNTVDFHVKNVMRKLDTTRRTALAAKAVEL 243

Query: 244 NIV 246
            I+
Sbjct: 244 GII 246


>gi|310769028|gb|ADP21168.1| PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D E +GRE + L W ++GKTS+EI VI+G+  +TVN +  +I RK     R  A++YAV
Sbjct: 178 DVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236


>gi|297203085|ref|ZP_06920482.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197712083|gb|EDY56117.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 212 VALRTGII 219


>gi|294632015|ref|ZP_06710575.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292835348|gb|EFF93697.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 151 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 210

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 211 VALRTGII 218


>gi|149193353|gb|ABR21211.1| PhzR [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 241

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D E +GRE + L W ++GKTS+EI VI+G+  +TVN +  +I RK     R  A++YAV
Sbjct: 178 DVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236


>gi|6572977|gb|AAF17494.1|AF195615_2 transcriptional activator PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D E +GRE + L W ++GKTS+EI VI+G+  +TVN +  +I RK     R  A++YAV
Sbjct: 178 DVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236


>gi|329940179|ref|ZP_08289461.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301005|gb|EGG44901.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 151 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 210

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 211 VALRTGII 218


>gi|239928247|ref|ZP_04685200.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291436576|ref|ZP_06575966.1| two-component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|302557677|ref|ZP_07310019.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|89274975|gb|ABD65938.1| two-component response regulator [Streptomyces fungicidicus]
 gi|291339471|gb|EFE66427.1| two-component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|302475295|gb|EFL38388.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 212 VALRTGII 219


>gi|302537555|ref|ZP_07289897.1| two-component system response regulator [Streptomyces sp. C]
 gi|302446450|gb|EFL18266.1| two-component system response regulator [Streptomyces sp. C]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 212 VALRTGII 219


>gi|302554896|ref|ZP_07307238.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472514|gb|EFL35607.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 212 VALRTGII 219


>gi|21224361|ref|NP_630140.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|256784453|ref|ZP_05522884.1| two-component regulator [Streptomyces lividans TK24]
 gi|289768332|ref|ZP_06527710.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|3169043|emb|CAA19241.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|289698531|gb|EFD65960.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 212 VALRTGII 219


>gi|295835904|ref|ZP_06822837.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|333023773|ref|ZP_08451837.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|295825771|gb|EFG64471.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|332743625|gb|EGJ74066.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 219

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 151 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 210

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 211 VALRTGII 218


>gi|294815678|ref|ZP_06774321.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064]
 gi|326444025|ref|ZP_08218759.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328277|gb|EFG09920.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 221

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 153 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 212

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 213 VALRTGII 220


>gi|328885874|emb|CCA59113.1| two-component regulator [Streptomyces venezuelae ATCC 10712]
          Length = 221

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 153 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 212

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 213 VALRTGII 220


>gi|302522529|ref|ZP_07274871.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302431424|gb|EFL03240.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 219

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 151 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 210

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 211 VALRTGII 218


>gi|297191334|ref|ZP_06908732.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720655|gb|EDY64563.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 220

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 212 VALRTGII 219


>gi|269837643|ref|YP_003319871.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786906|gb|ACZ39049.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 234

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY----DVHWGKDFE 185
           YC+   D A + + ++    +G  ++ + +     +A+   + F+      +V  G    
Sbjct: 103 YCTKDIDPAEL-VTVIRRVARGEYLINENVLSRPFVASRVLDQFRELAQIDEVSSGVFSP 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT REVE L  ++ G ++ EIA +L IS  TV N+I SI+RK A   R+ A+ YA+R+
Sbjct: 162 LTPREVEILDCVARGNSNKEIARLLNISDQTVKNHITSILRKLAVNDRTQAVIYALRH 219


>gi|290956584|ref|YP_003487766.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260646110|emb|CBG69203.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 198

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 130 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 189

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 190 VALRTGII 197


>gi|218673534|ref|ZP_03523203.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 245

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243

Query: 246 V 246
           +
Sbjct: 244 I 244


>gi|306850701|gb|ADN06870.1| transcriptional activator PhzR [Pseudomonas sp. CMR12a]
          Length = 241

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 7/111 (6%)

Query: 138 ARIRIGLMLLFPKGRII-------LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
           A+ R+GL+ L  + + I       L+       + A  + +  ++ D       E +GRE
Sbjct: 126 AQGRVGLLSLARRNKAISAEEFEALKPVTKAFAMAAHEKLSELENDDSSLNVQVEFSGRE 185

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + L W ++GKTS+EI VI+G+  +TVN +  +I RK     R  A++YAV
Sbjct: 186 CDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236


>gi|218661906|ref|ZP_03517836.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 245

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243

Query: 246 V 246
           +
Sbjct: 244 I 244


>gi|227821019|ref|YP_002824989.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227340018|gb|ACP24236.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 257

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 18/238 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWPF 84
           LP   D  + +  L+        M  +T   G   FL+        ++L +  V S+ P 
Sbjct: 20  LPRGGDFASEIAKLETQFDIIRYMRRITHIFGFKTFLICSIPPIDMERLSAATVISNMPA 79

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTL----PENITPPAGMD-------NRYCSL 133
           +L+         ++   ++R  E   P   TL     E  TP +  D       N     
Sbjct: 80  ELLNKYDSLSMLRFSTGVRRLRETTTPFQITLEDWESEGGTPDSAADYIVMLRENGIFQA 139

Query: 134 TF----DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTG 188
            +    D    R  ++L+ P+  + +   + E+ ++A +  N        W      L+ 
Sbjct: 140 NYFPVHDAEGGRGAVILMGPEADLPMTAAM-ELQMIAIHVYNRLAEIGSVWKSSSTTLSE 198

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE++CL+W + GKTS EIA ILG+S +TVN+Y+  + +K     R+ A+  A++   +
Sbjct: 199 REIQCLSWTAAGKTSAEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 256


>gi|318061060|ref|ZP_07979781.1| two-component response regulator [Streptomyces sp. SA3_actG]
          Length = 198

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 130 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 189

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 190 VALRTGII 197


>gi|86356503|ref|YP_468395.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280605|gb|ABC89668.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 248

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 187 LTDREIDCLNWTAAGKTSAEIAEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 246

Query: 246 V 246
           +
Sbjct: 247 I 247


>gi|218463393|ref|ZP_03503484.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 245

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 184 LTEREIDCLNWTAAGKTSAEIAEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243

Query: 246 V 246
           +
Sbjct: 244 I 244


>gi|48375112|gb|AAT42219.1| PcoR [Pseudomonas fluorescens]
          Length = 234

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 4/98 (4%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAV 208
           +I    L +  L+  Y    F+       K+FE    LT RE+ECL W++ GKTS EI+ 
Sbjct: 135 LINAQGLPQFALMRDYLIESFQKLQNASEKEFETPPXLTARELECLKWVAAGKTSWEISR 194

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IL  +  TVN ++ + MRK   ++R  A+   +R+ +V
Sbjct: 195 ILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232


>gi|167567698|ref|ZP_02360614.1| response regulator receiver protein [Burkholderia oklahomensis
           EO147]
          Length = 347

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR+GA A A++
Sbjct: 284 FGLTMREAEVLLWVSHGKTNRDIGDILGITPRTVNKHLEHLFRKLHVETRAGATAAAIK 342


>gi|298247008|ref|ZP_06970813.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297549667|gb|EFH83533.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 644

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +L+ REVE L  ++ GK++ +I  IL IS  TV N+IASI  KT    R+GA A+A+R+
Sbjct: 581 LDLSEREVEVLRLVATGKSNRQIGEILVISERTVINHIASIFNKTGVSNRAGATAFAIRH 640

Query: 244 NIV 246
            +V
Sbjct: 641 KLV 643


>gi|90415637|ref|ZP_01223571.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium
           HTCC2207]
 gi|90332960|gb|EAS48130.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium
           HTCC2207]
          Length = 302

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F LT RE E LTWIS+GKT+ EIA+IL  S  T N ++  I RK   + R+ A A ++
Sbjct: 236 EKFGLTAREAEVLTWISKGKTNHEIAIILDFSPRTANKHLEQIFRKLNVENRTTAAAVSL 295

Query: 242 R 242
           R
Sbjct: 296 R 296


>gi|116250693|ref|YP_766531.1| LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255341|emb|CAK06416.1| putative LuxR/GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 245

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243

Query: 246 V 246
           +
Sbjct: 244 I 244


>gi|241203295|ref|YP_002974391.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857185|gb|ACS54852.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 244

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 183 LTDREIDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 242

Query: 246 V 246
           +
Sbjct: 243 I 243


>gi|167574776|ref|ZP_02367650.1| response regulator receiver protein [Burkholderia oklahomensis
           C6786]
          Length = 345

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR+GA A A++
Sbjct: 282 FGLTMREAEVLLWVSHGKTNRDIGDILGITPRTVNKHLEHLFRKLHVETRAGATAAAIK 340


>gi|150396769|ref|YP_001327236.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150028284|gb|ABR60401.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 246

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 42/65 (64%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LTGRE E LTW + GK+  EIA ILGIS  TV  ++ +  RK    + + A+A+AV
Sbjct: 179 RDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAV 238

Query: 242 RNNIV 246
           R+ ++
Sbjct: 239 RHALI 243


>gi|27802473|gb|AAO21111.1| BisR [Rhizobium leguminosarum bv. viciae]
          Length = 246

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  REVECL W S GK S +IA ILG+S +T   Y+ S   K    T S AIA+AV  N+
Sbjct: 178 LGTREVECLHWASRGKDSKDIAEILGLSEHTARGYLKSARYKLGCPTLSAAIAHAVHLNL 237

Query: 246 V 246
           +
Sbjct: 238 I 238


>gi|12620586|gb|AAG60862.1|AF322012_167 ID375 [Bradyrhizobium japonicum]
          Length = 261

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 156 RDRLWEIGLLA-AYQ---ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           +DR+  +  LA A+    A +    D     D  LT RE ECL W++EGK++  I  ++ 
Sbjct: 167 QDRMAHLTTLASAFHNAVAQITPPLDESCETDIPLTPRETECLYWVAEGKSAWVIGQLVN 226

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ NTVN ++ +++RK     R+ A+A A R  I+
Sbjct: 227 VTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGII 261


>gi|15964582|ref|NP_384935.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309328|ref|ZP_07588991.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307320064|ref|ZP_07599485.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15073760|emb|CAC45401.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306894279|gb|EFN25044.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306900197|gb|EFN30815.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 277

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 20/239 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPF 84
           LP   D  + +  L+        M  +T+  G   FL+      + ++L +  V S+ P 
Sbjct: 40  LPRGGDFASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMPA 99

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSL-------- 133
           +L+         ++   ++R  E   P F  + E+     G  +    Y ++        
Sbjct: 100 ELLNKYDSLSMLRFSTGVRRLRETTTP-FQVMLEDWEREGGKPDSAADYIAMLRENGIFQ 158

Query: 134 -----TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELT 187
                  D    R  ++L+ P+  + +   + E+ ++A +  N        W   +  L+
Sbjct: 159 ANYFPVHDAEGGRGAVILMGPEAELPMTAAM-ELQMIAIHVYNRLAEIGSVWKNTNTVLS 217

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++CL+W + GKTS EIA ILG+S +TVN+Y+  + +K     R+ A+  A++   +
Sbjct: 218 EREIQCLSWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 276


>gi|74316369|ref|YP_314109.1| LuxR family transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055864|gb|AAZ96304.1| Transcriptional Regulator, LuxR family [Thiobacillus denitrificans
           ATCC 25259]
          Length = 258

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE E L W+ +GKT++EIA ILG+S  TV N++   M+K   +TR  A+A A+
Sbjct: 189 ITAREAEVLAWVRDGKTNEEIAAILGLSMLTVKNHLRHAMQKLVVRTRGQAVARAI 244


>gi|27376991|ref|NP_768520.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27350133|dbj|BAC47145.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 253

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 156 RDRLWEIGLLA-AYQ---ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           +DR+  +  LA A+    A +    D     D  LT RE ECL W++EGK++  I  ++ 
Sbjct: 159 QDRMAHLTTLASAFHNAVAQITPPLDESCETDIPLTPRETECLYWVAEGKSAWVIGQLVN 218

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ NTVN ++ +++RK     R+ A+A A R  I+
Sbjct: 219 VTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGII 253


>gi|15965591|ref|NP_385944.1| putative transcription regulator HSL-dependent protein
           [Sinorhizobium meliloti 1021]
 gi|307302711|ref|ZP_07582467.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318559|ref|ZP_07597993.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15074772|emb|CAC46417.1| Quorum sensing system, AHL autoinducer-binding, luxR family,
           regulator of sinI [Sinorhizobium meliloti 1021]
 gi|306895899|gb|EFN26651.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306903075|gb|EFN33666.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 245

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 42/65 (64%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LTGRE E LTW + GK+  EIA ILGIS  TV  ++ +  RK    + + A+A+AV
Sbjct: 178 RDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAV 237

Query: 242 RNNIV 246
           R+ ++
Sbjct: 238 RHALI 242


>gi|218681045|ref|ZP_03528942.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 244

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 183 LTDREIDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 242

Query: 246 V 246
           +
Sbjct: 243 I 243


>gi|209548111|ref|YP_002280028.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533867|gb|ACI53802.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 244

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 183 LTDREIDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 242

Query: 246 V 246
           +
Sbjct: 243 I 243


>gi|326797312|ref|YP_004315132.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326548076|gb|ADZ93296.1| transcriptional regulator, LuxR family [Marinomonas mediterranea
           MMB-1]
          Length = 254

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 36/53 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L WIS GKT+ EI++ILGIS NTV N++ASI+ K     R  A A
Sbjct: 198 LTSREREVLNWISSGKTNGEISMILGISPNTVKNHVASILGKLNAPNRLAATA 250


>gi|150395666|ref|YP_001326133.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150027181|gb|ABR59298.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 286

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 20/239 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPF 84
           LP   D  + +  L+        M  +T+  G   FL+      + ++L +  V S+ P 
Sbjct: 49  LPRGGDFASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMPA 108

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-----PENITPPAGMD-------NRYCS 132
           +L+         ++   ++R  E   P F  L      E   P A  D       N    
Sbjct: 109 ELLNKYDSLSMLRFSTGVRRLRETTTP-FQILLEDWEKEGGKPDAAADYFAMLRENGLLQ 167

Query: 133 LTF----DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELT 187
             +    D    R  ++L+ P+  + +   + E+ ++A +  N        W   +  L+
Sbjct: 168 ANYFPVHDAEGGRGAVILMGPEAGLPMTAAM-ELQMIAIHVYNRLAEIGSVWKNTNTVLS 226

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++CL W + GKTS EIA ILG+S +TVN+Y+  + +K     R+ A+  A++   +
Sbjct: 227 EREIQCLNWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 285


>gi|311898876|dbj|BAJ31284.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 246

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 42/62 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A A+R  
Sbjct: 184 ELSGREVEVLRLVAEGQSNKAIGVAMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTG 243

Query: 245 IV 246
           I+
Sbjct: 244 II 245


>gi|62822972|gb|AAY15207.1| transcriptional activator PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           E +GRE + L W ++GKTS+EI VI+G+  +TVN +  +I RK     R  A++YAV
Sbjct: 180 EFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236


>gi|315657544|ref|ZP_07910426.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492016|gb|EFU81625.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 221

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 179 HWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           H G+  D  LT RE E LT +SE +T+ +IA  L IS NTV  +I SI++K     R+GA
Sbjct: 151 HAGEPSDTVLTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADRAGA 210

Query: 237 IAYAVRNNIV 246
           +A+ +R  I+
Sbjct: 211 VAHGIRQGII 220


>gi|304390336|ref|ZP_07372289.1| possible response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326092|gb|EFL93337.1| possible response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 221

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 179 HWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           H G+  D  LT RE E LT +SE +T+ +IA  L IS NTV  +I SI++K     R+GA
Sbjct: 151 HAGEPSDTVLTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADRAGA 210

Query: 237 IAYAVRNNIV 246
           +A+ +R  I+
Sbjct: 211 VAHGIRQGII 220


>gi|190890568|ref|YP_001977110.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695847|gb|ACE89932.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 246

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 185 LTDREIDCLNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 244

Query: 246 V 246
           +
Sbjct: 245 I 245


>gi|240142578|ref|YP_002967091.1| hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens
           AM1]
 gi|240012525|gb|ACS43750.1| Hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens
           AM1]
          Length = 265

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 45/67 (67%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +G+  +LT REV+ L+W ++GKT+DE +VIL + R TV+ ++++  RK     ++ A+A 
Sbjct: 197 FGRPPKLTSREVDVLSWAAKGKTADETSVILALGRETVHTHLSNACRKLQASNKTHAVAM 256

Query: 240 AVRNNIV 246
           AV   ++
Sbjct: 257 AVHRRLI 263


>gi|327188113|gb|EGE55336.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 245

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243

Query: 246 V 246
           +
Sbjct: 244 I 244


>gi|218508993|ref|ZP_03506871.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Brasil 5]
          Length = 245

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGL 243

Query: 246 V 246
           +
Sbjct: 244 I 244


>gi|307325178|ref|ZP_07604382.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889324|gb|EFN20306.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 42/62 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A A+R  
Sbjct: 157 ELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTG 216

Query: 245 IV 246
           I+
Sbjct: 217 II 218


>gi|297156497|gb|ADI06209.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 42/62 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A A+R  
Sbjct: 157 ELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTG 216

Query: 245 IV 246
           I+
Sbjct: 217 II 218


>gi|1730567|sp|P54303|PHZR_PSECL RecName: Full=Transcriptional activator protein phzR
 gi|496217|gb|AAA21841.1| positive regulatory protein [Pseudomonas chlororaphis subsp.
           aureofaciens]
          Length = 241

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D E +GRE + L W ++GKTS+EI VI+G+  +TVN +  +I RK     R  A  YAV
Sbjct: 178 DVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQASRYAV 236


>gi|14993797|gb|AAK73190.1| transcriptional activator CsaR [Pseudomonas chlororaphis subsp.
           aureofaciens]
          Length = 241

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  EL+ RE E L W ++GK+S EIA+ILGIS NTVN ++  I +K     ++ A AYA
Sbjct: 176 AEQLELSAREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYA 235

Query: 241 V 241
            
Sbjct: 236 A 236


>gi|222085036|ref|YP_002543565.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722484|gb|ACM25640.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 245

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  +
Sbjct: 184 LTDRELDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRVGL 243

Query: 246 V 246
           +
Sbjct: 244 I 244


>gi|28453859|gb|AAO43546.1| transcriptional activator CinR [Rhizobium etli CFN 42]
          Length = 246

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+ECL W S GK S +I  ILG+S +T   Y+ S   K    T S AIA+AV  N+
Sbjct: 178 LGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNL 237

Query: 246 V 246
           +
Sbjct: 238 I 238


>gi|13507195|gb|AAK28504.1| MupR [Pseudomonas fluorescens]
          Length = 234

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAV 208
           +I    L +  L+  Y    F+       K+ E    LT RE+ECL W++ GKTS EI+ 
Sbjct: 135 VIRSKGLPQFALMRDYLIESFQKIQSAAEKEVEKPPKLTARELECLKWVAAGKTSWEISR 194

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IL  +  TVN ++ + MRK   ++R  A+   +R+ +V
Sbjct: 195 ILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232


>gi|86359866|ref|YP_471757.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
 gi|86283968|gb|ABC93030.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
          Length = 261

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+ECL W S GK S +I  ILG+S +T   Y+ S   K    T S AIA+AV  N+
Sbjct: 193 LGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNL 252

Query: 246 V 246
           +
Sbjct: 253 I 253


>gi|2495423|sp|Q51786|PHZR_PSEFL RecName: Full=Transcriptional activator protein phzR
 gi|1050313|gb|AAC18899.1| shows homology to luxR family; putative [Pseudomonas fluorescens]
          Length = 244

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D E + RE + L W ++GKTS+EI VI+G+  +TVN +  +I RK     R  A++YAV
Sbjct: 181 DVEFSERECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 239


>gi|59940055|gb|AAX12566.1| LuxR-type transcriptional regulator [Aeromonas sp. 'CDC 2478-85']
          Length = 260

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL   +EGKTS EIA ILGI+   VN ++  + RKT +  R  AI   V + I
Sbjct: 183 LTARETECLFLATEGKTSGEIACILGITERPVNYHLNQVTRKTGSMNRCQAIIKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|296133351|ref|YP_003640598.1| two component transcriptional regulator, LuxR family [Thermincola
           sp. JR]
 gi|296031929|gb|ADG82697.1| two component transcriptional regulator, LuxR family [Thermincola
           potens JR]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L  I+EGKT+ EIA IL +S NT+ NY++ I+ K     R+ A AYAVRNN+
Sbjct: 154 LNPQERRILGLIAEGKTNKEIAQILTLSNNTIKNYVSGILSKLNFSNRAEAAAYAVRNNL 213

Query: 246 V 246
           +
Sbjct: 214 M 214


>gi|148253086|ref|YP_001237671.1| LuxR transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405259|gb|ABQ33765.1| Regulatory protein, LuxR [Bradyrhizobium sp. BTAi1]
          Length = 201

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W K+  L  RE+E LTW++ GKTS EIA ILG+S+ TV+ +I +   K    TR+ A   
Sbjct: 133 WVKEVNLNHREIETLTWVARGKTSAEIAKILGLSKRTVDFHIDNARIKLGVATRTQAAIK 192

Query: 240 AVRNNIV 246
           AV   ++
Sbjct: 193 AVTGKLI 199


>gi|156744333|ref|YP_001434462.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156235661|gb|ABU60444.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 231

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ L  ++ G+T+ EIA +L IS  TV N+I+SI+RK A   R+ A+ YA+R
Sbjct: 161 LSPRELQVLELVAAGRTNKEIAKVLDISNQTVKNHISSILRKLAVNDRTQAVVYAMR 217


>gi|7385149|gb|AAF61719.1|AF232769_1 acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas fluorescens]
          Length = 241

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 38/57 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           EL+ RE E L W ++GK+S EIA+ILGIS NTVN ++  I +K     ++ A AYA 
Sbjct: 180 ELSAREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAA 236


>gi|218659948|ref|ZP_03515878.1| autoinducer transcriptional regulator protein [Rhizobium etli
           IE4771]
          Length = 246

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+ECL W S GK S +I  ILG+S +T   Y+ +   K    T S AIA+AV  N+
Sbjct: 178 LGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKAARYKLGCPTLSAAIAHAVHLNL 237

Query: 246 V 246
           +
Sbjct: 238 I 238


>gi|163758741|ref|ZP_02165828.1| putative AHL-dependent transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284031|gb|EDQ34315.1| putative AHL-dependent transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 239

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 177 DVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ++H G D    L+ RE+ECLT  + GK   +IA+ILG+S +TV  Y+ S   K  +    
Sbjct: 166 EIHGGNDQALHLSPREIECLTLAARGKDHKDIALILGLSGHTVQGYLKSARHKLGSVNIP 225

Query: 235 GAIAYAVRNNIV 246
            AIA A+R+ I+
Sbjct: 226 QAIAEAIRSRII 237


>gi|302388953|ref|YP_003824774.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
 gi|302199581|gb|ADL07151.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
          Length = 213

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + +I+EG ++ EI+  LGIS  TV N+++SI+RK     R+    YA++NN+
Sbjct: 153 LTAREKEVMAYIAEGMSNIEISEKLGISEKTVKNHVSSILRKLNLMDRTQVAVYALKNNL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|219846976|ref|YP_002461409.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219541235|gb|ACL22973.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  ++ G+T+ EIA  L IS  TV N+I+SI+RK A   R+ A+ YA+R
Sbjct: 161 LSARELEVLELVAAGRTNREIAAQLDISNQTVKNHISSILRKLAVNDRTQAVVYAMR 217


>gi|218134363|ref|ZP_03463167.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989748|gb|EEC55759.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC
           43243]
          Length = 218

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 43/70 (61%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+  GK  +LT RE++ L  I+ G  + EIAV L IS  TV N+I++I RK     R+ A
Sbjct: 146 DIMTGKVNDLTKRELQVLKLIANGMFNREIAVQLKISERTVKNHISNIFRKINVSDRTQA 205

Query: 237 IAYAVRNNIV 246
             +A++N IV
Sbjct: 206 AVFAIKNKIV 215


>gi|238917970|ref|YP_002931487.1| two-component system, NarL family, response regulator DegU
           [Eubacterium eligens ATCC 27750]
 gi|238873330|gb|ACR73040.1| two-component system, NarL family, response regulator DegU
           [Eubacterium eligens ATCC 27750]
          Length = 214

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           DV   K  ELT RE+E L  I+ G  + EIA  L IS  TV N++++I +K     R+ A
Sbjct: 142 DVLKDKVSELTRRELEVLKMIASGAFNKEIASTLNISERTVKNHVSNIFKKIGVSDRTQA 201

Query: 237 IAYAVRNNIV 246
             +A++NNI+
Sbjct: 202 AVFAIKNNII 211


>gi|239820479|ref|YP_002947664.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
 gi|239805332|gb|ACS22398.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 235

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT R+VE L W  +GKTSDEIA IL IS+ TV+ ++ + M +    T+S A A+A R
Sbjct: 174 LTKRQVEVLRWTGDGKTSDEIAAILCISKPTVDFHLRNAMARLGASTKSSAAAFASR 230


>gi|209863456|gb|ACI88828.1| PhzR [Pseudomonas sp. G5(2008b)]
          Length = 241

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +GRE + L W ++GKTS+EI VI+G+  +TVN +  +I RK     R  A++YAV
Sbjct: 181 FSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAV 236


>gi|309792258|ref|ZP_07686730.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308225799|gb|EFO79555.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  ++ G+T+ EIA+ L IS  TV N+++SI+RK A   R+ A+ YA+R
Sbjct: 161 LSPRELEVLELVAAGRTNKEIALNLDISNQTVKNHVSSILRKLAVNDRTQAVVYAMR 217


>gi|92109564|ref|YP_571851.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91802646|gb|ABE65019.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 231

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE +CL W  EGKT+ EI+ ILGIS++TV  +I +   K    +++ AIA A+R  +
Sbjct: 170 LTAREWDCLLWAGEGKTNWEISAILGISKSTVTKHIMAARAKLGAVSKAHAIAMAIRTKL 229

Query: 246 V 246
           +
Sbjct: 230 L 230


>gi|88812489|ref|ZP_01127738.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis
           Nb-231]
 gi|88790275|gb|EAR21393.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis
           Nb-231]
          Length = 249

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE ECL W +EGKTS EIA ILGIS  T   ++ +  R+    +R  A+A AV   
Sbjct: 183 ELTAREHECLLWAAEGKTSWEIARILGISERTAIFHLQNAARRLNASSRQQAVARAVSQG 242

Query: 245 IV 246
           ++
Sbjct: 243 LI 244


>gi|311696551|gb|ADP99424.1| two-component response regulator [marine bacterium HP15]
          Length = 279

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           FELT RE + L WI+ GKT+ EI  IL +S  TVN ++  + RK   + R+ A A A+R
Sbjct: 216 FELTLRESDVLLWIANGKTNREIGQILDMSPRTVNKHLEQVFRKLGVENRTAAAASAIR 274


>gi|150390890|ref|YP_001320939.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950752|gb|ABR49280.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 217

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 165 LAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LA+     F   D H  K+    +LT RE E LT I+EG+ + EIA  L IS  TV N++
Sbjct: 131 LASQLVKEFNRRDDHHDKEPREGKLTKREYEVLTLIAEGQNNKEIASNLFISEKTVKNHV 190

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
           ++I +K     R+ A  YA ++NI
Sbjct: 191 SNIFKKIHVNDRTQAAIYAYKHNI 214


>gi|170694163|ref|ZP_02885318.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170140903|gb|EDT09076.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 262

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++ECLTW++ GKTS EI  ILG SR TV  +I   M     ++R+ A  +A    I
Sbjct: 200 LTARQLECLTWVARGKTSAEIGEILGRSRYTVEFHIKEAMDALNIRSRTAAAVHATVQGI 259

Query: 246 V 246
           +
Sbjct: 260 I 260


>gi|160895667|ref|YP_001561249.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160361251|gb|ABX32864.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 339

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +   LT RE E L+W+S+GKT+ +IA ILG+S  TVN ++  I  K   +TR+ A A A
Sbjct: 272 QQVALTPRETEVLSWLSKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAAVA 330


>gi|192360065|ref|YP_001981449.1| two-component transcriptional regulator, LuxR family [Cellvibrio
           japonicus Ueda107]
 gi|190686230|gb|ACE83908.1| two-component transcriptional regulator, LuxR family [Cellvibrio
           japonicus Ueda107]
          Length = 312

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F +TGRE + L WI+ GKT+ EI  IL +S  TVN ++  I +K   + R+ A A A+
Sbjct: 247 QQFAVTGREADVLRWIANGKTNREIGQILDMSPRTVNKHLEQIFKKLGVENRTSAAAAAI 306

Query: 242 R 242
           +
Sbjct: 307 K 307


>gi|296161870|ref|ZP_06844671.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295887889|gb|EFG67706.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 262

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++ECLTW++ GKTS EI  ILG S  TV+ +I   M     ++R+ A  +A  + I
Sbjct: 200 LTARQLECLTWVARGKTSAEIGEILGRSHYTVDYHIKEAMEALNIRSRTAAAVHATVHGI 259

Query: 246 V 246
           +
Sbjct: 260 I 260


>gi|163758577|ref|ZP_02165664.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162283867|gb|EDQ34151.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 237

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E L W + GKTS EIA IL +S +TVN Y+ S MRK     R+  +A A+R ++
Sbjct: 176 ITTRELEVLHWAANGKTSTEIAAILSLSDHTVNTYMNSAMRKLDCVNRTQLVAKALRLHL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|209886745|ref|YP_002290602.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans
           OM5]
 gi|209874941|gb|ACI94737.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans
           OM5]
          Length = 195

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++CL W  EGKT  EI+VILGISR+TV  +I S   K     +  AIA A+R  I
Sbjct: 134 LSPRELDCLLWAGEGKTDWEISVILGISRSTVTKHITSAREKLNAVNKPHAIAIAMRLKI 193

Query: 246 V 246
           +
Sbjct: 194 L 194


>gi|59940155|gb|AAX12616.1| LuxR-type transcriptional regulator [Aeromonas sp. 13m]
          Length = 260

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL   SEGKTS +IA IL I+  TVN ++  + RKT +  R  AIA  V + I
Sbjct: 183 LTDRETECLFCASEGKTSGDIACILRITERTVNYHLNHVTRKTVSMNRYQAIAKGVSSGI 242

Query: 246 V 246
           +
Sbjct: 243 L 243


>gi|300787038|ref|YP_003767329.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796552|gb|ADJ46927.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 215

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    LT RE E L  ++EG T+DEI   LG+SRNT  N++  ++ K   +++  A+A A
Sbjct: 149 GGGAALTARERETLDLLAEGATTDEIGARLGVSRNTTRNHVQRVLEKLGARSKLEAVAVA 208

Query: 241 VRNNIV 246
            R  ++
Sbjct: 209 RREGLI 214


>gi|71279244|ref|YP_268811.1| LuxR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144984|gb|AAZ25457.1| transcriptional regulator, LuxR family [Colwellia psychrerythraea
           34H]
          Length = 269

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 40/57 (70%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE +CL W ++GKT++EIA ILG+   T+  YI ++M++   ++++ A+  A+
Sbjct: 196 KLTAREKDCLYWSAQGKTANEIADILGLKTETIRKYIKNVMKRLNARSKTQAVVKAI 252


>gi|298251689|ref|ZP_06975492.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546281|gb|EFH80149.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H   DF LT RE E L  I+ G+   E+   LGI+R TV +Y+ SI  K    +R+ A+A
Sbjct: 151 HENSDFHLTAREREVLAGIASGERGKEVGARLGITRRTVESYLNSIYTKLNVDSRAAAVA 210

Query: 239 YAVRNNIV 246
            A+ + ++
Sbjct: 211 IAIEHGLL 218


>gi|241765736|ref|ZP_04763682.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241364396|gb|EER59519.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 301

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L W+++GKT+ +IA ILG+S  TVN ++  I  K   +TRS A A A +
Sbjct: 236 EVPLTPRETEVLAWLAKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRSAATAVASK 295


>gi|296448320|ref|ZP_06890211.1| transcriptional regulator, LuxR family [Methylosinus trichosporium
           OB3b]
 gi|296254166|gb|EFH01302.1| transcriptional regulator, LuxR family [Methylosinus trichosporium
           OB3b]
          Length = 254

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+  ELT R++E L W+ +GKT+ EI+VILG+S + V  ++  I RK     R+ A+A A
Sbjct: 189 GRGAELTPRQIEILEWLRQGKTNWEISVILGMSVDNVKYHVKQITRKLQVANRTQAVAEA 248

Query: 241 VRNNIV 246
              +++
Sbjct: 249 ASRSVI 254


>gi|167628890|ref|YP_001679389.1| transcriptional regulator, luxr family, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591630|gb|ABZ83378.1| transcriptional regulator, luxr family, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 214

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F     H G   ELT RE E L  I++G T+ +IA  L IS  TV N+I +I RK   K 
Sbjct: 141 FNRTVAHSGD--ELTEREKEVLGLIAQGSTNADIASALFISEKTVKNHITNIFRKLQVKD 198

Query: 233 RSGAIAYAVRNNIV 246
           R+ A  YA++N +V
Sbjct: 199 RTQAALYAIKNRLV 212


>gi|92109527|ref|YP_571814.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91802609|gb|ABE64982.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 228

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE +CL W  EGKT+ E + ILGISR+TV  +I +   K    +++ AIA A+R  +
Sbjct: 167 LTAREWDCLLWAGEGKTNWETSAILGISRSTVTKHIMAARAKLGAVSKAHAIATAIRTKL 226

Query: 246 V 246
           +
Sbjct: 227 L 227


>gi|326315054|ref|YP_004232726.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323371890|gb|ADX44159.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 308

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +LT RE E L+WI++GKT+ +IA ILG+S  TVN ++  I  K   +TR+ A A A
Sbjct: 245 VDLTPRETEVLSWIAKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAALA 301


>gi|300870842|ref|YP_003785713.1| two-component system regulator [Brachyspira pilosicoli 95/1000]
 gi|300688541|gb|ADK31212.1| two-component system regulator [Brachyspira pilosicoli 95/1000]
          Length = 320

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           DF LT RE + L+++  GKT+ EI++I  IS NTVNN++A+I  K+  K R
Sbjct: 260 DFNLTKREKQILSYLLSGKTNKEISLIFDISLNTVNNHVANIYYKSGVKNR 310


>gi|307943595|ref|ZP_07658939.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307773225|gb|EFO32442.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 232

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REVECL W S G TS EIA  LGISR+T + Y+    +K   + R+ A+  A R  
Sbjct: 170 DLTPREVECLKWSSNGLTSSEIAEKLGISRHTADWYLKEATQKLGAQNRTHAVMIAYRKG 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|13474964|ref|NP_106527.1| hypothetical protein mll8752 [Mesorhizobium loti MAFF303099]
 gi|14025713|dbj|BAB52313.1| mll8752 [Mesorhizobium loti MAFF303099]
          Length = 248

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE EC+ WI+ GK+S EI  ILGIS NTVN ++ + MRK  T +R+ A   A    
Sbjct: 185 DLSLREKECILWIARGKSSWEIGKILGISGNTVNFHLKNAMRKLDTASRTVAAIKATSLG 244

Query: 245 IV 246
           IV
Sbjct: 245 IV 246


>gi|327190710|gb|EGE57792.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 240

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K    T  E++CL   + G+ S EIA +L +S N VNN+I S+++K    TR+ A+  A+
Sbjct: 174 KPIAFTSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSAL 233

Query: 242 RNNIV 246
           R NI+
Sbjct: 234 RLNII 238


>gi|225620688|ref|YP_002721946.1| DNA-binding response regulator, LuxR family protein [Brachyspira
           hyodysenteriae WA1]
 gi|225215508|gb|ACN84242.1| DNA-binding response regulator, LuxR family protein [Brachyspira
           hyodysenteriae WA1]
          Length = 317

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           D  LT RE E L+++ +GKT+ E+++IL IS NTVNN++A+I  K+  K R
Sbjct: 257 DINLTRREKEILSYLLDGKTNKEVSLILSISLNTVNNHVANIYEKSGVKNR 307


>gi|255608035|ref|XP_002538833.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus
           communis]
 gi|223510221|gb|EEF23550.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus
           communis]
          Length = 234

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+ECL W++ GKT  +IA +LG+S+ T   +I    RK   +TRS A+A  V + +
Sbjct: 174 LTHRELECLRWVAAGKTDLQIARLLGVSQTTARTHIDQARRKLGARTRSQAVARLVLSGL 233


>gi|162148611|ref|YP_001603072.1| LuxR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787188|emb|CAP56781.1| putative transcriptional regulator, luxR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 239

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W+S GKT+ +I+VILGIS NT+N Y+ +++ K     R  A+  A+  N++
Sbjct: 180 REKECLLWVSRGKTTWDISVILGISENTINAYLKNVILKLGCSGRIQAVLRAIDLNLI 237


>gi|163848189|ref|YP_001636233.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222526094|ref|YP_002570565.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163669478|gb|ABY35844.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449973|gb|ACM54239.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 228

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  ++ G T+ EIA  L IS  TV N+I+SI+RK A   R+ A+ YA+R
Sbjct: 161 LSARELEVLELVAAGHTNREIAARLDISNQTVKNHISSILRKLAVNDRTQAVVYAMR 217


>gi|163854702|ref|YP_001629000.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258430|emb|CAP40729.1| transcriptional regulator, LuxR-family [Bordetella petrii]
          Length = 71

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE ECL W + GKTS EIAVILG+S  TVN +I +   K     R  A+A A+   +
Sbjct: 6   LSNREHECLHWSAMGKTSWEIAVILGVSERTVNFHIGNACSKLGVYNRRAAVAIALSQGL 65

Query: 246 V 246
           +
Sbjct: 66  L 66


>gi|167564011|ref|ZP_02356927.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
 gi|167571156|ref|ZP_02364030.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 238

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+ECL WI+ GK+S EIA+ILGIS N V  ++  +M K   ++R  A+  A+ + +
Sbjct: 178 LTHRELECLKWIAAGKSSWEIAMILGISENGVLYHVKKLMAKFDVQSRHLAVLKAMASGV 237

Query: 246 V 246
           V
Sbjct: 238 V 238


>gi|159184428|ref|NP_353732.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159139741|gb|AAK86517.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 201

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++CL W + GKTS EIA I+ +S +T+N+Y+    +K  T  R+ A+A A+R  +
Sbjct: 140 LSEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKALRVGL 199

Query: 246 V 246
           +
Sbjct: 200 I 200


>gi|218515977|ref|ZP_03512817.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 173

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K    T  E++CL   + G+ S EIA +L +S N VNN+I S+++K    TR+ A+  A+
Sbjct: 107 KPIAFTSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSAL 166

Query: 242 RNNIV 246
           R NI+
Sbjct: 167 RLNII 171


>gi|251799733|ref|YP_003014464.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547359|gb|ACT04378.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 242

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +  T     D    SL   +  +  G   + PK  G++I + R    L E+G++
Sbjct: 100 VFETLRKGATGYLLKDMEAESLINAIRSVVNGHAYIHPKVTGKLINQLRRMTYLDEMGVI 159

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +   A M        G+D  LT RE E L  ++EGK++  I   L IS  TV N+++SI+
Sbjct: 160 SGAAAGMEPGVKFVAGEDNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 219

Query: 226 RKTATKTRSGAIAYAVR 242
           +K     R+ A+  +++
Sbjct: 220 QKMEVDDRTQAVIQSIK 236


>gi|144900185|emb|CAM77049.1| regulatory protein, LuxR:Autoinducer-binding [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 242

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W + GK+S +I VIL IS NTVN ++ + M K    TR  AI  A+R  +
Sbjct: 180 LTARERECLIWSARGKSSWDIGVILNISDNTVNFHLKNAMGKLKASTRVLAIVKAIRMGL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|190890862|ref|YP_001977404.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190696141|gb|ACE90226.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 240

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K    T  E++CL   + G+ S EIA +L +S N VNN+I S+++K    TR+ A+  A+
Sbjct: 174 KPIAFTSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSAL 233

Query: 242 RNNIV 246
           R NI+
Sbjct: 234 RLNII 238


>gi|218663535|ref|ZP_03519465.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 240

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K    T  E++CL   + G+ S EIA +L +S N VNN+I S+++K    TR+ A+  A+
Sbjct: 174 KPIAFTSSELDCLRLTAGGRKSSEIAKLLHLSENAVNNHIGSVIKKLGCTTRTQAVVSAL 233

Query: 242 RNNIV 246
           R NI+
Sbjct: 234 RLNII 238


>gi|196231768|ref|ZP_03130625.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224240|gb|EDY18753.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 216

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + +I+EG+T+ E+A +LG+S  T  ++ A++M+K   KT    I YA+RN I
Sbjct: 154 LTSREREAVKFIAEGRTNKELADVLGVSLRTAESHRAAVMQKLGLKTIGELIRYALRNGI 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|170719977|ref|YP_001747665.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757980|gb|ACA71296.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 236

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 43/63 (68%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT    ++GA+A A+  
Sbjct: 172 LKMSDRELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNASNKAGAVAIAMMR 231

Query: 244 NIV 246
            ++
Sbjct: 232 GLI 234


>gi|222149400|ref|YP_002550357.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736383|gb|ACM37346.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 241

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 40/171 (23%)

Query: 109 FCPVFHTLPENITP---------PAGMDNRYCSLTFDVA---RIRIGLMLLFPKGRIILR 156
           FCPV      +I P         P  M   +     D+    ++ +G++ +FP     L 
Sbjct: 77  FCPVVKKFAGSILPRTWDMKFREPNDMAEEWPPAMRDLMMRFKLIVGVVFIFPS----LD 132

Query: 157 DRLW-----------------EIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLT 195
            RL+                 E+G+LA     +F +YD     +      L+ RE+E L 
Sbjct: 133 SRLYFMRFDGDRSPLSQCEVNELGMLAM---AVFDTYDRLRRTELMNVDVLSVRELEVLR 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W ++GKTS EI  IL +S +T+N Y+ + M+K     R+  +A A+R  ++
Sbjct: 190 WTAQGKTSVEIGQILSLSDHTINAYMTTAMKKLDCVNRTQLVAKAIRLKLI 240


>gi|296134303|ref|YP_003641550.1| two component transcriptional regulator, LuxR family [Thermincola
           sp. JR]
 gi|296032881|gb|ADG83649.1| two component transcriptional regulator, LuxR family [Thermincola
           potens JR]
          Length = 214

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E +  I+EGK + EIA  L IS  TV N+I+SI RK     R+ A  YA++ N
Sbjct: 154 ELTAREREIIRLIAEGKNNREIAAELFISEKTVKNHISSIFRKIKVHDRTQAALYAIKTN 213

Query: 245 I 245
           +
Sbjct: 214 L 214


>gi|170736657|ref|YP_001777917.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818845|gb|ACA93427.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 321

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 40/63 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+ R+ ECL W++ GK+S  IA I+GIS +TV+ +IA  M+     +R+ A  +AV  
Sbjct: 257 LELSPRQQECLAWVARGKSSWAIAAIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTT 316

Query: 244 NIV 246
            ++
Sbjct: 317 GLI 319


>gi|325292093|ref|YP_004277957.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059946|gb|ADY63637.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 246

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE++CL W + GKTS EIA I+ +S +T+N+Y+    +K  T  R+ A+A A+R  +
Sbjct: 185 LNEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKALRVGL 244

Query: 246 V 246
           +
Sbjct: 245 I 245


>gi|206562110|ref|YP_002232873.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
 gi|198038150|emb|CAR54100.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
          Length = 262

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 40/63 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+ R+ ECL W++ GK+S  IA I+GIS +TV+ +IA  M+     +R+ A  +AV  
Sbjct: 198 LELSPRQQECLAWVARGKSSWAIASIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTT 257

Query: 244 NIV 246
            ++
Sbjct: 258 GLI 260


>gi|227822236|ref|YP_002826207.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii
           NGR234]
 gi|227341236|gb|ACP25454.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii
           NGR234]
          Length = 244

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT RE E LTW + GK+  EIA ILGIS  TV  ++++  RK    + + A+A AV
Sbjct: 177 RDTRLTSRETEVLTWSAAGKSYWEIATILGISERTVRFFMSNARRKLNVVSNTQAVAQAV 236

Query: 242 RNNIV 246
           R+ ++
Sbjct: 237 RHALI 241


>gi|16519915|ref|NP_444035.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii
           NGR234]
 gi|2495427|sp|P55629|Y4QH_RHISN RecName: Full=Putative HTH-type transcriptional regulator y4qH
 gi|2182594|gb|AAB92463.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii
           NGR234]
          Length = 326

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE EC+ W++ GK+S +I VI+ IS NTVN +I ++MRK  T +R+ A   A+   I
Sbjct: 264 LSLREKECVLWVARGKSSWDIGVIMRISENTVNFHIKNVMRKLGTSSRTVAAIKAISLGI 323

Query: 246 V 246
           +
Sbjct: 324 I 324


>gi|291287188|ref|YP_003504004.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884348|gb|ADD68048.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 245

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 5/191 (2%)

Query: 59  SHFLLVRWDLFQEQKLDSIVS-SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           +H ++   + F ++  D +V   D+  D V    L+ K+    V   P  +   +F    
Sbjct: 56  THKIIYSDNAFMQRTDDYVVPMEDYAADKVFPQILAGKE-VIKVTNSPVYVHDVIFQHAG 114

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKS 175
              + P   ++RY     +    +I  +++F         +  +I   L A    N  + 
Sbjct: 115 NAGSKPCENEDRYILAKMN-HETQIASLIVFVVNAKESEGKFEQIACYLHAHLLTNYVRI 173

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V      +L+GRE   LTW+  GKTS E+A IL I+ NTVN +I +I  K     R  
Sbjct: 174 LSVSNENIIKLSGREKSVLTWLKYGKTSWEVAKILNITENTVNFHIKNIKNKLNATNRQH 233

Query: 236 AIAYAVRNNIV 246
           A+A A+  +I+
Sbjct: 234 AVAIAIAKSII 244


>gi|261856181|ref|YP_003263464.1| LuxR family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261836650|gb|ACX96417.1| two component transcriptional regulator, LuxR family
           [Halothiobacillus neapolitanus c2]
          Length = 292

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L+ +G  +L  R+ E GLL+  Q +  ++      + F+LT RE E L W++ GKT+ EI
Sbjct: 195 LWHQGERLLFTRI-EPGLLS-IQRHAAQAEPEALARIFQLTAREAESLYWVALGKTNKEI 252

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             IL IS  TVN ++  +  K   +TR+ A A
Sbjct: 253 GEILQISPRTVNKHLEHVFEKLGVETRTAAAA 284


>gi|124265864|ref|YP_001019868.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124258639|gb|ABM93633.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 333

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F LTGRE E L W+++GKT+ +I  ILG S  TV+ ++  +  K   +TR+ A A A+
Sbjct: 268 FRLTGREAEVLHWVAQGKTNRDIGDILGTSPRTVHKHLEHVFAKLGVETRTSAAAMAL 325


>gi|297622936|ref|YP_003704370.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164116|gb|ADI13827.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 478

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 42/62 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I+EG+ ++EIA+ LG+S+NTV NY+A++  K   + R+ A+ +A    
Sbjct: 401 DLTARERQVLELIAEGQKNEEIALALGLSKNTVRNYVANLYAKIGVQGRAEAVIWARERG 460

Query: 245 IV 246
           ++
Sbjct: 461 VI 462


>gi|303248220|ref|ZP_07334483.1| transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302490358|gb|EFL50269.1| transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 258

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W+ EGK+S +IA++LGI   TV  ++A++MRK     R+  +A A+R  +
Sbjct: 195 LSRREREVLDWLKEGKSSWDIAMVLGIRERTVRFHVANLMRKLGAVNRAQTVALALRRGL 254

Query: 246 V 246
           +
Sbjct: 255 I 255


>gi|332799645|ref|YP_004461144.1| LuxR family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697380|gb|AEE91837.1| two component transcriptional regulator, LuxR family
           [Tepidanaerobacter sp. Re1]
          Length = 215

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G ++ EI++ LGIS  TV N+++SI+RK     R+ A  +A++N +
Sbjct: 155 LTAREKEVLADIAKGMSNREISIDLGISEKTVKNHVSSILRKLNLMDRTQAAVFAIKNRL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|327480105|gb|AEA83415.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri
           DSM 4166]
          Length = 222

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K       + F+LTGREVE L W+S GKT+ +I  ILG+S  TVN ++  +  K   +TR
Sbjct: 150 KQIQAMLSQRFQLTGREVEVLHWVSCGKTNRDIGDILGLSPRTVNKHLEHVYVKLGVETR 209

Query: 234 S 234
           +
Sbjct: 210 T 210


>gi|218463347|ref|ZP_03503438.1| transcriptional regulator, LuxR family protein [Rhizobium etli Kim
           5]
          Length = 240

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 41/65 (63%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  E T  E++CL   + G+  +EIA +L ++ N VNN+I S+++K    TR+ A+  A+
Sbjct: 174 KPIEFTRSELDCLRLTAGGRKGNEIAKLLDLTENAVNNHIGSVIKKLGCTTRTQAVVSAL 233

Query: 242 RNNIV 246
           R NI+
Sbjct: 234 RLNII 238


>gi|325271203|ref|ZP_08137751.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324103661|gb|EGC00960.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 40/57 (70%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A 
Sbjct: 174 KMSARELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAA 230


>gi|258510526|ref|YP_003183960.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477252|gb|ACV57571.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L ++S G ++ EIA  L IS NTV N++  I+ K     R+ A AYAVRN 
Sbjct: 161 ELTEREREVLQYLSAGASNKEIARALFISENTVRNHVRHILDKLHLSNRAQAAAYAVRNG 220

Query: 245 I 245
           I
Sbjct: 221 I 221


>gi|317050861|ref|YP_004111977.1| regulatory protein LuxR [Desulfurispirillum indicum S5]
 gi|316945945|gb|ADU65421.1| regulatory protein LuxR [Desulfurispirillum indicum S5]
          Length = 243

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L W +EGK+++EI++IL ISR+TV  ++  I +K     R  AIA A+R
Sbjct: 179 DTNLSERERELLFWTAEGKSTEEISMILAISRDTVKYHLKRIYQKLDAVNRHHAIAKALR 238

Query: 243 NNIV 246
             ++
Sbjct: 239 AGLI 242


>gi|254473001|ref|ZP_05086399.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062]
 gi|211957722|gb|EEA92924.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062]
          Length = 239

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 145 MLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           ML+F    + L +R    L  +G+ A+ +       + +  +   LT RE+ECL W + G
Sbjct: 134 MLIFGGPEVRLNEREISVLHLVGIYASNKVRELVGANTNRPR-HRLTPRELECLKWSAAG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KTS EI+ IL IS++T + Y+AS  RK     R+ A+A   R  ++
Sbjct: 193 KTSWEISQILNISQHTADWYLASAARKLHAANRTHAVAEGFRLGLI 238


>gi|262196287|ref|YP_003267496.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262079634|gb|ACY15603.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM
           14365]
          Length = 254

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 41/63 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++L+ RE ECL W++ GKTS EI  ILGI+  T   ++ + M+K     RS A+A A+++
Sbjct: 190 YKLSERERECLRWVAAGKTSWEIGHILGIAERTAIFHLNNAMKKLGAVNRSHAVARALQH 249

Query: 244 NIV 246
            ++
Sbjct: 250 GVI 252


>gi|298244586|ref|ZP_06968392.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297552067|gb|EFH85932.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 523

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 163 GLLAAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            L+A+ QA ++ K   +   +  +LT RE+E +  +++G+ + +IA  L IS+ TV +++
Sbjct: 439 ALVASLQAGDVGKKAVLKRSQATDLTQREIEVVRLLTQGQNTPQIARTLSISKKTVEHHL 498

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           A I  K     R+ A+AYAV+ N+V
Sbjct: 499 AHIYTKFGVSCRTAAVAYAVQQNLV 523


>gi|297538769|ref|YP_003674538.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297258116|gb|ADI29961.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 281

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 8/105 (7%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           TF+V    +GL++  P    +LR ++  I  + A +A       V   K + L+ RE+E 
Sbjct: 180 TFNVQDSLMGLLM--PHIDNVLR-KIQHIEPVDASEAE-----SVSVIKSYNLSVRELEI 231

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + W+ +GKT  EIA+IL IS+NTV +++  +  K     R+ A+A
Sbjct: 232 IDWVKQGKTDSEIAMILFISQNTVKSHLKHVFEKLNVSRRAQAVA 276


>gi|78222725|ref|YP_384472.1| LuxR family transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193980|gb|ABB31747.1| transcriptional regulator, LuxR family [Geobacter metallireducens
           GS-15]
          Length = 246

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E ++W++ GK   EI+VILGIS  TV  + ++I++K     RS A+A A+   +
Sbjct: 183 LTPREIEVISWLANGKNYWEISVILGISERTVKFHTSTIVQKLGAANRSHAVAIAISTGL 242

Query: 246 V 246
           +
Sbjct: 243 I 243


>gi|282863833|ref|ZP_06272891.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561534|gb|EFB67078.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 219

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+  Y A +  + D    +D  LT RE+E L  I++G +++EIA  L ISR TV  +++ 
Sbjct: 138 LVGRYAARIRPTGD--AARDIPLTPRELEVLRLIADGLSNNEIAAALVISRETVKTFVSR 195

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R  A+ YA R  +V
Sbjct: 196 ILTKLGLRDRVQAVIYAYRQGLV 218


>gi|296114148|ref|ZP_06832803.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295979224|gb|EFG85947.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 237

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  L+ RE ECL W+++GK + EI+ IL IS NTV  ++ +IM+K     R  A+  A+
Sbjct: 171 EDCSLSDRERECLLWVAQGKNTLEISSILNISDNTVKYHLKNIMQKLGAHNRIQAVVQAI 230


>gi|119116629|dbj|BAF40892.1| LuxR [Shewanella hanedai]
          Length = 243

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE ECL WISEGKT+ EI+ IL  S  TV+ +I ++  K  T  RS +I+ ++
Sbjct: 177 QLTPREKECLAWISEGKTTWEISKILDCSERTVSFHITNLQTKLGTNNRSQSISKSI 233


>gi|89093728|ref|ZP_01166675.1| two-component transcriptional regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
 gi|89082124|gb|EAR61349.1| two-component transcriptional regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
          Length = 303

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            E+T RE E L WI+ GKT+ EIA ILG+S  TVN ++  +  K   + R+ A   A+R
Sbjct: 239 LEITERESEVLHWIANGKTNREIAEILGMSPRTVNKHLEQLFPKLGVENRTAAAGVALR 297


>gi|304407706|ref|ZP_07389357.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304343189|gb|EFM09032.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 242

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +  T     D    +L   +  +  G   + PK  G++I + R    L E+G +
Sbjct: 100 VFETLRKGATGYLLKDMEAEALINAIRSVMTGHSYIHPKVTGKLINQLRRMTYLDEMGAV 159

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +   A          G+D  LT RE E L  ++EGK++  I   L IS  TV N+++SI+
Sbjct: 160 SGAAAGKETGVKFVAGEDNPLTRREAEVLRLMAEGKSNKTIGEFLFISEKTVKNHVSSIL 219

Query: 226 RKTATKTRSGAIAYAVR 242
           +K     R+ A+ ++++
Sbjct: 220 QKMEVDDRTQAVIHSIK 236


>gi|221633642|ref|YP_002522868.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
 gi|221156159|gb|ACM05286.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
          Length = 245

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L  ++ G ++ EIA  L IS  TV N+I SI+RK A   R+ A+ YA+R+ 
Sbjct: 162 LTPREIEILDCVARGYSNKEIAQALNISDQTVKNHITSILRKLAVNDRTQAVIYALRHG 220


>gi|238895474|ref|YP_002920209.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262043448|ref|ZP_06016571.1| regulatory protein SdiA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330001006|ref|ZP_08303866.1| regulatory protein SdiA [Klebsiella sp. MS 92-3]
 gi|238547791|dbj|BAH64142.1| LuxR/UhpA-family transcriptional activator for cell division
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259039190|gb|EEW40338.1| regulatory protein SdiA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328537810|gb|EGF64005.1| regulatory protein SdiA [Klebsiella sp. MS 92-3]
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + + + RE+E L W +EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV 
Sbjct: 177 EMKFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|206576935|ref|YP_002237709.1| regulatory protein SdiA [Klebsiella pneumoniae 342]
 gi|290508769|ref|ZP_06548140.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55]
 gi|206565993|gb|ACI07769.1| regulatory protein SdiA [Klebsiella pneumoniae 342]
 gi|289778163|gb|EFD86160.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55]
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + + + RE+E L W +EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV 
Sbjct: 177 EMKFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|120556773|ref|YP_961124.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
 gi|120326622|gb|ABM20937.1| two component transcriptional regulator, LuxR family [Marinobacter
           aquaeolei VT8]
          Length = 301

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F+LT RE + L WI+ GKT+ EI  IL +S  TVN ++  + RK   + R+ A A A+R
Sbjct: 238 FDLTLRESDVLLWIANGKTNREIGQILEMSPRTVNKHLEQVFRKMNVENRTAAAANAIR 296


>gi|152970958|ref|YP_001336067.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955807|gb|ABR77837.1| transcriptional activator for cell division (LuxR/UhpA family)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 228

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + + + RE+E L W +EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV 
Sbjct: 165 EMKFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVA 224

Query: 243 NNIV 246
             ++
Sbjct: 225 TGLI 228


>gi|288934569|ref|YP_003438628.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889278|gb|ADC57596.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22]
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + + + RE+E L W +EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV 
Sbjct: 177 EMKFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|222066056|emb|CAX21483.1| ppoR luxR family protein [Pseudomonas putida]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 41/57 (71%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT+   ++GA+A A 
Sbjct: 174 KMSKRELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTSAANKAGAVAIAA 230


>gi|171912646|ref|ZP_02928116.1| methyl-accepting chemotaxis sensory transducer [Verrucomicrobium
           spinosum DSM 4136]
          Length = 331

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W+ EGK++ EI VILGIS +TV  ++  ++ K   + R  A  Y 
Sbjct: 265 DETLTAREKEVLEWMQEGKSNPEIGVILGISTHTVKRHVERVLAKLGVENRVAAALYG 322


>gi|152994993|ref|YP_001339828.1| response regulator receiver protein [Marinomonas sp. MWYL1]
 gi|150835917|gb|ABR69893.1| response regulator receiver protein [Marinomonas sp. MWYL1]
          Length = 304

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+ +LT RE E L WI+ GKT+ EIA IL +S  TVN ++  I  K   + R+ A   A+
Sbjct: 238 KELDLTDRESEVLHWIANGKTNREIAEILEMSPRTVNKHLEQIFPKLGVENRTSAAGVAL 297

Query: 242 R 242
           R
Sbjct: 298 R 298


>gi|330810585|ref|YP_004355047.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378693|gb|AEA70043.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F+LTGREVE L W++ GKT+ +I  IL +S  TVN ++  +  K   +TR+ A + A+
Sbjct: 161 FQLTGREVEVLRWVACGKTNRDIGTILDLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218


>gi|163761139|ref|ZP_02168216.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162281690|gb|EDQ31984.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 246

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L  RE E L W +EGKTS EIA I G+S +TVN+Y     +K     R+ A+  A+R
Sbjct: 185 LNARETEVLQWTAEGKTSAEIARITGLSEHTVNHYATIATQKLGCSNRTQAVVQAIR 241


>gi|240142577|ref|YP_002967090.1| hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens
           AM1]
 gi|240012524|gb|ACS43749.1| Hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens
           AM1]
          Length = 296

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE + L W + GKT+ E A+ILG+S  TVN+++    +K     ++ A+A A+   +
Sbjct: 234 LSGRERDVLAWAAHGKTAGETALILGLSMETVNHHLGKAQKKLMAANKTHAVAIAINRGV 293

Query: 246 V 246
           +
Sbjct: 294 I 294


>gi|149184172|ref|ZP_01862490.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148831492|gb|EDL49925.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 217

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L WI+ GKT+ EIA ILGI   TV  YI  +  K   K RS A   A+R  I
Sbjct: 155 LSNRETEILHWIALGKTNSEIATILGIGGPTVATYIKRVFDKLDVKDRSSAAVKAIRWGI 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|222055510|ref|YP_002537872.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
 gi|221564799|gb|ACM20771.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
          Length = 248

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 43/64 (67%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +FEL+ RE+E L W+ +GK+S +I+VIL IS  TV  ++ +IM K    +R+ A+A A+ 
Sbjct: 182 NFELSKREIEVLNWVKKGKSSWDISVILAISVRTVKFHVENIMVKLNAVSRTHAVAIALS 241

Query: 243 NNIV 246
             ++
Sbjct: 242 AGVI 245


>gi|295134891|ref|YP_003585567.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Zunongwangia profunda SM-A87]
 gi|294982906|gb|ADF53371.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Zunongwangia profunda SM-A87]
          Length = 207

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           R   IG  A Y+ +     ++  W  DF+LT RE+E L  I +GK++ EI+ IL  S+ T
Sbjct: 118 RKVRIGETAFYEEHTKAVSNIKIWTSDFKLTNRELEILQLIKDGKSTKEISEILHRSQFT 177

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243
           +  +  +++RK   K  SG + +A++N
Sbjct: 178 IETHRKNMIRKLNLKNSSGLLHFAMKN 204


>gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
 gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
          Length = 304

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L P GR+   + L+ +   A  +A   ++        FELT RE E L WI++GK++ +I
Sbjct: 210 LHPLGRVGPDENLFRV--TAEDEAGQVQALQ----GSFELTQREAEVLIWIAKGKSNKDI 263

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 264 GEILGLSPRTVNKHLEQIFVKLGVENRASAAVRA 297


>gi|170700574|ref|ZP_02891575.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134522|gb|EDT02849.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 240

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 37/55 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ R+ ECL W+ +GKTS EI +I+GIS +TV+ +++  M+     +R+ A  +A
Sbjct: 178 LSPRQQECLYWVGQGKTSPEIGMIMGISHHTVDYHLSEAMKILNVNSRTKAAVFA 232


>gi|303241719|ref|ZP_07328216.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302590720|gb|EFL60471.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 216

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 10/87 (11%)

Query: 169 QANMFKS----------YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           QANM +           +D    ++  LT REVE L  I+EG  + EIA  L IS  TV 
Sbjct: 128 QANMTRELVREFNKITLHDKSKSEESNLTAREVEVLELIAEGMINKEIAKRLYISEKTVK 187

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
           N++++I RK     R+ A  YA ++N+
Sbjct: 188 NHVSNIFRKLNVSDRTQAAIYAFKHNM 214


>gi|114565755|ref|YP_752909.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336690|gb|ABI67538.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 213

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE + LT + +G T+ E+A ++ IS  TV N++ SI RK   K R+ A  YA++
Sbjct: 147 EIRLTKREKDVLTLLVKGNTNKEMAEVMFISEKTVKNHLTSIFRKLGVKDRTHAAIYALK 206

Query: 243 NNIV 246
           N IV
Sbjct: 207 NRIV 210


>gi|148549711|ref|YP_001269813.1| autoinducer-binding domain-containing protein [Pseudomonas putida
           F1]
 gi|148513769|gb|ABQ80629.1| transcriptional regulator, LuxR family [Pseudomonas putida F1]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 40/57 (70%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A 
Sbjct: 174 KMSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAA 230


>gi|146343657|ref|YP_001208705.1| CheY/LuxR family two-component transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146196463|emb|CAL80490.1| Two-component transcriptional regulator, CheY-LuxR families
           (two-component signal transduction system)
           [Bradyrhizobium sp. ORS278]
          Length = 305

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +  +F LT RE E L+W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R+ A A
Sbjct: 236 EFSSEFGLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAA 295

Query: 239 YA 240
            A
Sbjct: 296 IA 297


>gi|116694039|ref|YP_728250.1| response regulator [Ralstonia eutropha H16]
 gi|113528538|emb|CAJ94885.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 297

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E + W++ GKT+ +IA ILG+S  TVN ++  I  K   +TR+ A+A   RN
Sbjct: 236 LTLREAEVMAWVARGKTNRDIADILGMSPRTVNKHLEHIYEKLGVETRTAAVAATRRN 293


>gi|163847185|ref|YP_001635229.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525026|ref|YP_002569497.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668474|gb|ABY34840.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448905|gb|ACM53171.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 246

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  I+ G ++ EIA  LGIS  TV N+I+SI+RK +   R+ A+ +A+R
Sbjct: 172 LSEREIEVLERIAAGNSNKEIADALGISTQTVKNHISSILRKLSLNDRTQAVIFALR 228


>gi|313500551|gb|ADR61917.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 40/57 (70%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A 
Sbjct: 174 KMSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAA 230


>gi|311279135|ref|YP_003941366.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308748330|gb|ADO48082.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + + + RE+E L W +EGKTS EI++IL IS NTVN +  ++ +K     ++    YAV 
Sbjct: 177 EMKFSKRELEILKWTAEGKTSAEISIILSISENTVNFHQKNMQKKFNAPNKTQIACYAVA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 222

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    F+LT REV+ L W++ GKT+ +IA IL +S  TVN ++  I  K   +TR+ A +
Sbjct: 154 HLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATS 213

Query: 239 YAV 241
            A+
Sbjct: 214 VAL 216


>gi|91776279|ref|YP_546035.1| LuxR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710266|gb|ABE50194.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus
           KT]
          Length = 257

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 36/53 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+GRE+E + W+++GKT+ EI +IL IS  TV N++  I +K     R+ A+A
Sbjct: 201 LSGRELEIMDWVTKGKTNQEIGMILDISAFTVKNHLQRIFKKLNVMNRAQAVA 253


>gi|300693708|ref|YP_003749681.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (luxr family) [Ralstonia
           solanacearum PSI07]
 gi|299075745|emb|CBJ35050.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (LuxR family) [Ralstonia
           solanacearum PSI07]
          Length = 238

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    D  LTGREVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K     ++ A
Sbjct: 168 DLAGDSDDSLTGREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAA 227

Query: 237 IAYAV 241
           +  A 
Sbjct: 228 VVRAA 232


>gi|288960054|ref|YP_003450394.1| two-component response regulator [Azospirillum sp. B510]
 gi|288912362|dbj|BAI73850.1| two-component response regulator [Azospirillum sp. B510]
          Length = 310

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L WI+ GK + +I  ILGIS  TVN ++  +  K   + R+ A A A+R 
Sbjct: 248 LTAREAEVLLWIANGKPNRDIGEILGISPRTVNKHLEQVFAKLGVENRASAAALAIRT 305


>gi|167035632|ref|YP_001670863.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862120|gb|ABZ00528.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 39/56 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A 
Sbjct: 175 MSERELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAA 230


>gi|326202012|ref|ZP_08191882.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
 gi|325987807|gb|EGD48633.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
          Length = 216

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I+EG  + EIA  L IS  TV N+I++I +K     R+ A  YA ++NI
Sbjct: 155 LTNREVEVLKLIAEGMINKEIAKTLYISEKTVKNHISNIFKKLDVNDRTQAAIYAFKHNI 214


>gi|26991331|ref|NP_746756.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24986392|gb|AAN70220.1|AE016661_6 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
          Length = 279

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 40/57 (70%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A 
Sbjct: 218 KMSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAA 274


>gi|325294100|ref|YP_004279964.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325061953|gb|ADY65644.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 258

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE+E LT +++G TS EI   L IS +TV+ YI  I R+ + K R   +A A RN
Sbjct: 195 LELTRREMEVLTLMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRN 254

Query: 244 NIV 246
            ++
Sbjct: 255 GLL 257


>gi|219849240|ref|YP_002463673.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543499|gb|ACL25237.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 247

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  I+ G ++ EIA  LGIS  TV N+I+SI+RK +   R+ A+ +A+R
Sbjct: 174 LSEREIEVLERIAAGSSNKEIADALGISTQTVKNHISSILRKLSLNDRTQAVIFALR 230


>gi|38230162|gb|AAR14178.1| AHL receptor-like protein [Aeromonas veronii]
          Length = 75

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 30/42 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + R+
Sbjct: 33  LTERETECLFWASEGKTSGEIACILGITERTVNYHLNPVTRR 74


>gi|205352355|ref|YP_002226156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272136|emb|CAR36989.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627405|gb|EGE33748.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 18/118 (15%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
           R  S T+D   +R+ L         + R+ L     L  ++ +M  + ++ + K      
Sbjct: 141 RCSSFTYDEVELRLQL---------LARESL---SALTRFEDDMVMAPEMRFSK------ 182

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 183 REKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|148252241|ref|YP_001236826.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146404414|gb|ABQ32920.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 305

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +  +F LT RE E L+W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R+ A A
Sbjct: 236 EFSSEFGLTVRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAA 295

Query: 239 YA 240
            A
Sbjct: 296 IA 297


>gi|296137313|ref|YP_003644555.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
 gi|294341618|emb|CAZ90035.1| putative two-component system response regulator; CheY domain
           [Thiomonas sp. 3As]
 gi|295797435|gb|ADG32225.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S ++   +   LT RE E L  + +G T  EIAV LG+SR+TV +Y+  I RK    +R+
Sbjct: 151 SSNLPQEEHIALTERESEVLQLVGKGYTLPEIAVQLGLSRHTVADYVKQIYRKLNISSRA 210

Query: 235 GAIAYAVRNNIV 246
            A   AVR  +V
Sbjct: 211 EAALEAVRRGLV 222


>gi|168239186|ref|ZP_02664244.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735895|ref|YP_002114983.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|198243442|ref|YP_002215136.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|194711397|gb|ACF90618.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288026|gb|EDY27413.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937958|gb|ACH75291.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|322616943|gb|EFY13851.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618183|gb|EFY15075.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625853|gb|EFY22672.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626305|gb|EFY23115.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632720|gb|EFY29465.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322639062|gb|EFY35755.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640503|gb|EFY37156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322645988|gb|EFY42505.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649891|gb|EFY46312.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655499|gb|EFY51807.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660277|gb|EFY56515.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662958|gb|EFY59165.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668143|gb|EFY64302.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674097|gb|EFY70191.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675550|gb|EFY71624.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322683038|gb|EFY79054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686732|gb|EFY82710.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323195379|gb|EFZ80559.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199270|gb|EFZ84365.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204435|gb|EFZ89441.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207525|gb|EFZ92473.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211850|gb|EFZ96681.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217510|gb|EGA02229.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219586|gb|EGA04070.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323223588|gb|EGA07903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231532|gb|EGA15645.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235975|gb|EGA20054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240545|gb|EGA24588.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245437|gb|EGA29437.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323250207|gb|EGA34099.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253982|gb|EGA37806.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255491|gb|EGA39252.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262088|gb|EGA45651.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266211|gb|EGA49701.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270680|gb|EGA54121.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326622885|gb|EGE29230.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 231 ACYAAATGLI 240


>gi|225182003|ref|ZP_03735435.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167288|gb|EEG76107.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE + LT I+ GK++ EI   L IS  TV N+I +I RK     R+ A  YAV+
Sbjct: 152 DEPLSRRETDVLTLIARGKSNKEIGDELYISEKTVKNHITNIFRKIQVTDRTQAALYAVK 211

Query: 243 NNIV 246
           N IV
Sbjct: 212 NRIV 215


>gi|194468906|ref|ZP_03074890.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455270|gb|EDX44109.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 231 ACYAAATGLI 240


>gi|161613489|ref|YP_001587454.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168244797|ref|ZP_02669729.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168462512|ref|ZP_02696443.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822990|ref|ZP_02834990.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194445102|ref|YP_002041215.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448751|ref|YP_002046001.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197250905|ref|YP_002146073.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|204931037|ref|ZP_03221863.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|207856536|ref|YP_002243187.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|238912477|ref|ZP_04656314.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|161362853|gb|ABX66621.1| hypothetical protein SPAB_01206 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403765|gb|ACF63987.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407055|gb|ACF67274.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195634505|gb|EDX52857.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197214608|gb|ACH52005.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|204320081|gb|EDZ05286.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205336361|gb|EDZ23125.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340659|gb|EDZ27423.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|206708339|emb|CAR32642.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|320085432|emb|CBY95213.1| Regulatory protein sdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 231 ACYAAATGLI 240


>gi|62180524|ref|YP_216941.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224583549|ref|YP_002637347.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62128157|gb|AAX65860.1| transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family)
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224468076|gb|ACN45906.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322715000|gb|EFZ06571.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 231 ACYAAATGLI 240


>gi|104783716|ref|YP_610214.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112703|emb|CAK17431.1| putative transcriptional regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 234

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 38/55 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L W + GKT+ ++A IL +S +TVN +I S++ KT    ++GAIA A
Sbjct: 174 LSERELEVLKWSAGGKTAADVATILSLSTSTVNFHIRSVINKTNAANKAGAIAVA 228


>gi|16760896|ref|NP_456513.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29141412|ref|NP_804754.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213053513|ref|ZP_03346391.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213426356|ref|ZP_03359106.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213616131|ref|ZP_03371957.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650336|ref|ZP_03380389.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289824072|ref|ZP_06543670.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25302436|pir||AH0749 cell-division regulatory protein STY2158 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503193|emb|CAD05699.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137039|gb|AAO68603.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 231 ACYAAATGLI 240


>gi|168259766|ref|ZP_02681739.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|200391066|ref|ZP_03217677.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603511|gb|EDZ02057.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205351245|gb|EDZ37876.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 231 ACYAAATGLI 240


>gi|16765288|ref|NP_460903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167993519|ref|ZP_02574613.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|2992525|gb|AAC08299.1| SdiA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420484|gb|AAL20862.1| transcriptional regulator of ftsQAZ gene cluster [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|205328435|gb|EDZ15199.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247116|emb|CBG24939.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993936|gb|ACY88821.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158464|emb|CBW17974.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912940|dbj|BAJ36914.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224593|gb|EFX49656.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional
           activator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323130228|gb|ADX17658.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332988839|gb|AEF07822.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 231 ACYAAATGLI 240


>gi|237731962|ref|ZP_04562443.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2]
 gi|226907501|gb|EEH93419.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2]
          Length = 240

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 231 ACYAAATGLI 240


>gi|167552822|ref|ZP_02346573.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322659|gb|EDZ10498.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 240

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 231 ACYAAATGLI 240


>gi|56413135|ref|YP_150210.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362061|ref|YP_002141698.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56127392|gb|AAV76898.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093538|emb|CAR59000.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 240

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 230

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 231 ACYAAATGLI 240


>gi|66047443|ref|YP_237284.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63258150|gb|AAY39246.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 254

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           R  L E GLLA A+Q   +  +D  +       LT RE ECL+W +EG T+ EIA  L  
Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  TV  ++ S M+K   K R  A+  AV 
Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248


>gi|330969598|gb|EGH69664.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 254

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           R  L E GLLA A+Q   +  +D  +       LT RE ECL+W +EG T+ EIA  L  
Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  TV  ++ S M+K   K R  A+  AV 
Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248


>gi|298245147|ref|ZP_06968953.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552628|gb|EFH86493.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ REVE L +I+ G ++ EIA  L IS  TV N+I SI++K +   R+ A+ +A+R+
Sbjct: 164 LSSREVEILDYIARGNSNKEIAKSLKISDQTVKNHITSILKKLSVSDRTAAVVHALRH 221


>gi|222066054|emb|CAX21482.1| ppoR luxR family protein [Pseudomonas putida]
          Length = 235

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 40/57 (70%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +++ RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A 
Sbjct: 174 KMSERELEVLRWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNASNKAGAIAIAA 230


>gi|229590001|ref|YP_002872120.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361867|emb|CAY48766.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 221

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F+LT REVE L W++ GKT+ +I  ILG+S  TVN ++  +  K   +TR+ A + A+
Sbjct: 161 FQLTEREVEVLRWVACGKTNRDIGDILGLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218


>gi|269925915|ref|YP_003322538.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789575|gb|ACZ41716.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 226

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSD 204
           KG  I+ + L     +A+     F+  D+   +D E     LT REVE L  I+ G ++ 
Sbjct: 121 KGEYIINENLITKPFVASRVLKQFR--DLAALEDEENLFTPLTSREVEILDCIARGMSNK 178

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           EIA  + IS  TV N+I SI+RK A   R+ A+ YA++
Sbjct: 179 EIARQMSISDQTVKNHITSILRKLAVNDRTQAVIYALK 216


>gi|254562561|ref|YP_003069656.1| response regulator [Methylobacterium extorquens DM4]
 gi|254269839|emb|CAX25817.1| putative response regulator; input and output domains: CheY and
           LuxR family [Methylobacterium extorquens DM4]
          Length = 302

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A A A R+
Sbjct: 238 LPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 297


>gi|330952863|gb|EGH53123.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 254

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           R  L E GLLA A+Q   +  +D  +       LT RE ECL+W +EG T+ EIA  L  
Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  TV  ++ S M+K   K R  A+  AV 
Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248


>gi|260575467|ref|ZP_05843466.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2]
 gi|259022387|gb|EEW25684.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2]
          Length = 245

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REV+CL+W++ G   D+IA  LGI   TV+ YI S   K   +TR  A+A A+
Sbjct: 183 LTPREVDCLSWLAAGLRPDQIAETLGIGYRTVDKYIVSARGKLRARTRDQAVAKAL 238


>gi|218548547|ref|YP_002382338.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii
           ATCC 35469]
 gi|218356088|emb|CAQ88705.1| DNA-binding transcriptional activator [Escherichia fergusonii ATCC
           35469]
          Length = 251

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    I
Sbjct: 191 FSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGI 250

Query: 246 V 246
           +
Sbjct: 251 I 251


>gi|188582813|ref|YP_001926258.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179346311|gb|ACB81723.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 301

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A A A R+
Sbjct: 237 LPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 296


>gi|196228675|ref|ZP_03127541.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226956|gb|EDY21460.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 217

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 43/73 (58%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K  D     D  LT RE E +  ++EG ++ E+A  LGIS  TV  + A+IM+K   K+ 
Sbjct: 143 KPKDEEQTVDGRLTDREREIVQLLAEGASNKEVADSLGISVKTVETHRAAIMKKLKFKSF 202

Query: 234 SGAIAYAVRNNIV 246
           S  + YA+RN+I+
Sbjct: 203 SDLVRYAIRNHII 215


>gi|325496964|gb|EGC94823.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii
           ECD227]
          Length = 240

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    I
Sbjct: 180 FSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGI 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|218531623|ref|YP_002422439.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218523926|gb|ACK84511.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
          Length = 300

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A A A R+
Sbjct: 236 LPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295


>gi|254519325|ref|ZP_05131381.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913074|gb|EEH98275.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L  IS+G  + EIA  L +S  TV NYI SI +K   + R  A  YA+RNNI
Sbjct: 158 LTNRELNILYEISKGLKNKEIAEKLFLSEKTVKNYITSIFKKIEVEDRVQATIYAIRNNI 217


>gi|163852797|ref|YP_001640840.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|163664402|gb|ABY31769.1| response regulator receiver [Methylobacterium extorquens PA1]
          Length = 300

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A A A R+
Sbjct: 236 LPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295


>gi|324113634|gb|EGC07609.1| autoinducer binding domain-containing protein [Escherichia
           fergusonii B253]
          Length = 251

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    I
Sbjct: 191 FSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGI 250

Query: 246 V 246
           +
Sbjct: 251 I 251


>gi|240140122|ref|YP_002964599.1| putative response regulator; input and output domains: CheY and
           LuxR family [Methylobacterium extorquens AM1]
 gi|240010096|gb|ACS41322.1| putative response regulator; input and output domains: CheY and
           LuxR family [Methylobacterium extorquens AM1]
          Length = 300

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A A A R+
Sbjct: 236 LPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAVAARH 295


>gi|229073471|ref|ZP_04206602.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228709645|gb|EEL61688.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 131

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 67  ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 126

Query: 245 IV 246
           +V
Sbjct: 127 LV 128


>gi|220929282|ref|YP_002506191.1| LuxR family transcriptional regulator [Clostridium cellulolyticum
           H10]
 gi|219999610|gb|ACL76211.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulolyticum H10]
          Length = 216

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I+EG  + EIA  L IS  TV N+I++I +K     R+ A  YA ++NI
Sbjct: 155 LTNREVEVLKLIAEGMINKEIAKALYISEKTVKNHISNIFKKLDVNDRTQAAIYAFKHNI 214


>gi|170769400|ref|ZP_02903853.1| regulatory protein SdiA [Escherichia albertii TW07627]
 gi|170121724|gb|EDS90655.1| regulatory protein SdiA [Escherichia albertii TW07627]
          Length = 228

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 165 EMHFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 224

Query: 243 NNIV 246
             ++
Sbjct: 225 TGLI 228


>gi|197263477|ref|ZP_03163551.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197241732|gb|EDY24352.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 240

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 171 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNPPNKTQI 230

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 231 ACYAAATGLI 240


>gi|320010128|gb|ADW04978.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 219

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  I+EG ++ EIA  L ISR TV  +++ I+ K   + R  A+ YA R
Sbjct: 155 DIPLTPRELEVLRLIAEGLSNSEIAASLVISRETVKTFVSRILTKLGLRDRVQAVVYAYR 214

Query: 243 NNIV 246
             +V
Sbjct: 215 QGLV 218


>gi|218677689|ref|ZP_03525586.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 240

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  E T  E++CL   + G+   EIA +L ++ N VNN+I S ++K    TR+ A+  A+
Sbjct: 174 KPIEFTPGELDCLRLTAGGRKGSEIAKLLDLTENVVNNHIGSAIKKLGCTTRTQAVVSAL 233

Query: 242 RNNIV 246
           R NI+
Sbjct: 234 RLNII 238


>gi|160882054|ref|YP_001561022.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430720|gb|ABX44283.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 213

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG  + EIA  L IS  TV N++++I +K +   R+ A  YA++NN 
Sbjct: 150 LTRREIDVLKLLAEGLFNKEIAYRLSISEKTVKNHVSNIFKKISVSDRTQAAVYAIKNNF 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|213418834|ref|ZP_03351900.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 192

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 123 DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 182

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 183 ACYAAATGLI 192


>gi|170751099|ref|YP_001757359.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657621|gb|ACB26676.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 196

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LTGRE E LTW S GKTS EIA+IL +   TVN +    M++     R+ A+A A+
Sbjct: 135 LTGREREVLTWASRGKTSAEIALILDLRERTVNFHFDQAMKRLNVVNRTHAVARAL 190


>gi|213966697|ref|ZP_03394848.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato T1]
 gi|301383210|ref|ZP_07231628.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059053|ref|ZP_07250594.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato K40]
 gi|302133729|ref|ZP_07259719.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928547|gb|EEB62091.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato T1]
 gi|331018431|gb|EGH98487.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 254

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L  
Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  TV  ++ S M+K   K R  A+  AV 
Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248


>gi|28871673|ref|NP_794292.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854925|gb|AAO57987.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 254

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L  
Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  TV  ++ S M+K   K R  A+  AV 
Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248


>gi|283832684|ref|ZP_06352425.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220]
 gi|291072359|gb|EFE10468.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220]
          Length = 240

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|197103145|ref|YP_002128523.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196480421|gb|ACG79948.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 252

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+ R++ECL W  EGK+S  I  IL +S  TV+ ++AS  RK    TR  A+A A
Sbjct: 186 KLSARQIECLRWAREGKSSYVIGQILSLSARTVDEHLASACRKLGVHTRMQAVAQA 241


>gi|218459661|ref|ZP_03499752.1| LuxR family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 65

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E + W++ GKT+ EI  ILGIS  TVN +I++   K +    +  +A A+RN I
Sbjct: 4   VTPRELEIIGWMAAGKTAAEIGAILGISPITVNTHISNAKAKLSVFKETALVAAALRNGI 63

Query: 246 V 246
           +
Sbjct: 64  I 64


>gi|88797997|ref|ZP_01113584.1| two-component transcriptional regulator, LuxR family protein
           [Reinekea sp. MED297]
 gi|88779194|gb|EAR10382.1| two-component transcriptional regulator, LuxR family protein
           [Reinekea sp. MED297]
          Length = 303

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LTGRE E L WI+ GKT+ E A IL +S  TVN ++  I  K     R+ A   A++
Sbjct: 235 ELDLTGRESEVLYWIANGKTNRETAEILAMSPRTVNKHLEQIFSKLGVDNRTSAAGVALK 294


>gi|298247701|ref|ZP_06971506.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550360|gb|EFH84226.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 231

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  ELT RE E L  ++ G+ S EIAV LGIS  TV +++ASI  K    +R+ A+A A+
Sbjct: 159 EGMELTEREREILQGVARGERSKEIAVRLGISIRTVGSHLASIYTKLGVDSRASAVALAI 218

Query: 242 RNNIV 246
              ++
Sbjct: 219 ERGLL 223


>gi|148557255|ref|YP_001264837.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148502445|gb|ABQ70699.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 301

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            L+ RE+ECLTW + GKT ++IAVIL +S +TV  Y+  + +K     RS A+A A+
Sbjct: 237 SLSKRELECLTWSARGKTVEDIAVILDLSADTVRVYLKRVNQKLDAVNRSHAVAKAM 293


>gi|289642814|ref|ZP_06474951.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507383|gb|EFD28345.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 233

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG+ + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 170 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 229


>gi|116254365|ref|YP_770203.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259013|emb|CAK10122.1| LuxR-family regulator [Rhizobium leguminosarum bv. viciae 3841]
          Length = 251

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 20/171 (11%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDNRYCSLTF----- 135
           PF     MA   KD Y+   +R  ++    F H L +  I P  G +    SL+      
Sbjct: 93  PFRWREAMAAFRKDAYH---RRMEQMMVDAFGHGLEDGYIFPIHGRNGILASLSLAGKPI 149

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +++ + I L+        + R   W +  L        ++ +     D  LT RE+E L 
Sbjct: 150 ELSPVEIALL------EAVARKAFWRLLDLKGEA----QALETVLPADTPLTRREMEILH 199

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+ ++
Sbjct: 200 YLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGLI 250


>gi|258510158|ref|YP_003183592.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476884|gb|ACV57203.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 506

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDVA--RIRIGLM 145
           M + + D+    L +  ++  PVF     NI P + ++  + S  L   V   R  +G+M
Sbjct: 337 MRIRQTDRDIPSLTQFVQIAKPVFLKDVGNILPQSYVNKFHLSSLLVCPVIDNRRMLGIM 396

Query: 146 LLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWI 197
           LL   GR    D    R+ E  L  A +  + + Y             LT RE E L  I
Sbjct: 397 LLDHGGRPFTPDNATIRMVEAMLARAGRMIVMQMYRQAGAAPITPLTTLTKREREILQLI 456

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  + EI   L IS  TV  +++SI+RK   K R+ A+A A+R  I+
Sbjct: 457 ADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMRERII 505


>gi|86356800|ref|YP_468692.1| transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86280902|gb|ABC89965.1| probable transcriptional regulator protein [Rhizobium etli CFN 42]
          Length = 240

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K    T  E++CL   + G+ S EIA +L +S + VNN I S++RK    TR+ A+  A+
Sbjct: 174 KPVAFTQSELDCLRLTAGGRKSSEIAKLLDLSESAVNNQIGSVIRKLGCTTRTQAVVSAL 233

Query: 242 RNNIV 246
           R NI+
Sbjct: 234 RLNII 238


>gi|218291050|ref|ZP_03495082.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218239004|gb|EED06210.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 506

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 14/170 (8%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL-----TFDVARIRIGL 144
           M + + D+    L +  ++  PVF     NI P   ++  + S        D  R+ +G+
Sbjct: 337 MRIRQTDRDIPSLTQFVQIAKPVFLKDVGNILPQPYVNKFHLSSLLVCPVIDQRRL-LGI 395

Query: 145 MLLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTW 196
           MLL   GR    D    R+ E  L  A +  + + Y             LT RE E L  
Sbjct: 396 MLLDHGGRPFTPDNAAIRMVEAMLARAGRMIVMQMYRQAGAAPITPLTTLTKREREILQL 455

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  + EI   L IS  TV  +++SI+RK   K R+ A+A A+R  I+
Sbjct: 456 IADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMRERII 505


>gi|254427282|ref|ZP_05040989.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
 gi|196193451|gb|EDX88410.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
          Length = 301

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +T RE + L WI+ GKT+ EIA IL +S  TVN ++  I RK   + R+ A A  ++
Sbjct: 237 LHVTHREAQVLVWIAHGKTNREIAQILELSPRTVNKHLEQIFRKLGVENRTAAAAMVIQ 295


>gi|225181500|ref|ZP_03734942.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167748|gb|EEG76557.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 212

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  LT +EV+ L  IS GK + EIA I+ IS  TV NY+++I++K     R+ A +Y +
Sbjct: 147 KEHNLTPKEVQILDMISVGKANKEIAEIMKISDKTVRNYVSNILQKLNVSNRTEAASYWM 206

Query: 242 RNN 244
           RN+
Sbjct: 207 RNS 209


>gi|320160834|ref|YP_004174058.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994687|dbj|BAJ63458.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 222

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ +E   L  +SEGKT+ EIA  L +   TV NY++SI+ K     R+ A AYAV +N+
Sbjct: 159 LSQQEKHVLLLVSEGKTNREIAKALFLGEGTVRNYVSSILSKLGVSNRAEAAAYAVEHNL 218


>gi|71907077|ref|YP_284664.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71846698|gb|AAZ46194.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 308

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F LT RE E L W+ +GKTS++I  ILG S  TVN ++  +  K   +TR+ A   A+
Sbjct: 245 FRLTQREAEVLYWVVQGKTSNDIGDILGNSPRTVNKHLEHVFEKLGVETRTAAANLAM 302


>gi|229062451|ref|ZP_04199766.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228716840|gb|EEL68528.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 186

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  +++G ++ EIA  L IS  TV  +I  I RK   K+RS A+ YAVRN 
Sbjct: 122 ELTEREKEILFELAKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQ 181

Query: 245 IV 246
           +V
Sbjct: 182 LV 183


>gi|159898087|ref|YP_001544334.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891126|gb|ABX04206.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 257

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  I+ G T+ +IA  L IS  TV N+I+SI+RK +   R+ A+ YA+R
Sbjct: 167 LSDREIEVLEHIASGATNKDIADALKISTQTVKNHISSILRKLSLNDRTQAVLYALR 223


>gi|71736210|ref|YP_276356.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482085|ref|ZP_05636126.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|71556763|gb|AAZ35974.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322567|gb|EFW78660.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330180|gb|EFW86166.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330875327|gb|EGH09476.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330987492|gb|EGH85595.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011444|gb|EGH91500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 254

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L  
Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  TV  ++ S M+K   K R  A+  AV 
Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248


>gi|182413103|ref|YP_001818169.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840317|gb|ACB74569.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 209

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  I++GK + EIA +L IS  TV +++ +IM K     R+ A+  AV+  
Sbjct: 146 ELTSREIQVLQEIAKGKANKEIAAVLAISEYTVKDHLKNIMGKLHVAVRTEAVTAAVQRG 205

Query: 245 IV 246
           I+
Sbjct: 206 II 207


>gi|289625636|ref|ZP_06458590.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646651|ref|ZP_06477994.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488410|ref|ZP_07006441.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157035|gb|EFH98124.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330868197|gb|EGH02906.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 254

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L  
Sbjct: 159 RQSLAEFGLLAQAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  TV  ++ S M+K   K R  A+  AV 
Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248


>gi|167590019|ref|ZP_02382407.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 233

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            ELT REVE L W+++GKT+ EI++I+ IS  TVN ++ + + K  T   + A+A A 
Sbjct: 170 IELTAREVEVLKWVADGKTASEISMIMLISVYTVNFHVKNAVTKLKTSNTTAAVARAA 227


>gi|261340314|ref|ZP_05968172.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316]
 gi|288317405|gb|EFC56343.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316]
          Length = 240

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + + + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMKFSKREREILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis]
 gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis]
          Length = 213

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F+LT REVE L W++ GKT+ +I  ILG+S  TVN ++  +  K   +TR+ A + A+
Sbjct: 149 FQLTEREVEVLRWVACGKTNRDIGDILGLSPRTVNKHLEHVYVKLGVETRTAATSVAL 206


>gi|330888704|gb|EGH21365.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 254

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L  
Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADHLNR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  TV  ++ S M+K   K R  A+  AV 
Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248


>gi|111221195|ref|YP_711989.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111148727|emb|CAJ60403.1| Putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 213

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG+ + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 150 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 209


>gi|229079676|ref|ZP_04212209.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228703516|gb|EEL55969.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 213

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|32472133|ref|NP_865127.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH
           1]
 gi|32397505|emb|CAD72811.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH
           1]
 gi|327539236|gb|EGF25859.1| two-component system response regulator [Rhodopirellula baltica
           WH47]
          Length = 210

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  ++ G T+ EIA +LGIS  TV  ++  I+RK     R+ A  +AVR
Sbjct: 147 DVPLTQRESEVLRQMALGLTNKEIAKMLGISYETVKEHVQHILRKLGVSDRTQAAVWAVR 206

Query: 243 NNIV 246
            N+V
Sbjct: 207 KNLV 210


>gi|74311738|ref|YP_310157.1| DNA-binding transcriptional activator SdiA [Shigella sonnei Ss046]
 gi|82543616|ref|YP_407563.1| DNA-binding transcriptional activator SdiA [Shigella boydii Sb227]
 gi|157156210|ref|YP_001463220.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           E24377A]
 gi|187730097|ref|YP_001879705.1| DNA-binding transcriptional activator SdiA [Shigella boydii CDC
           3083-94]
 gi|193071152|ref|ZP_03052076.1| regulatory protein SdiA [Escherichia coli E110019]
 gi|194439563|ref|ZP_03071636.1| regulatory protein SdiA [Escherichia coli 101-1]
 gi|300822312|ref|ZP_07102453.1| autoinducer binding domain protein [Escherichia coli MS 119-7]
 gi|300917358|ref|ZP_07134027.1| autoinducer binding domain protein [Escherichia coli MS 115-1]
 gi|73855215|gb|AAZ87922.1| transcriptional regulator of ftsQAZ gene cluster [Shigella sonnei
           Ss046]
 gi|81245027|gb|ABB65735.1| transcriptional regulator of ftsQAZ gene cluster [Shigella boydii
           Sb227]
 gi|157078240|gb|ABV17948.1| regulatory protein SdiA [Escherichia coli E24377A]
 gi|187427089|gb|ACD06363.1| regulatory protein SdiA [Shigella boydii CDC 3083-94]
 gi|192955547|gb|EDV86026.1| regulatory protein SdiA [Escherichia coli E110019]
 gi|194421472|gb|EDX37486.1| regulatory protein SdiA [Escherichia coli 101-1]
 gi|300415404|gb|EFJ98714.1| autoinducer binding domain protein [Escherichia coli MS 115-1]
 gi|300525195|gb|EFK46264.1| autoinducer binding domain protein [Escherichia coli MS 119-7]
 gi|309702211|emb|CBJ01527.1| regulatory protein [Escherichia coli ETEC H10407]
 gi|320176080|gb|EFW51148.1| DNA-binding transcriptional activator SdiA [Shigella dysenteriae
           CDC 74-1112]
 gi|323165288|gb|EFZ51076.1| regulatory protein sdiA [Shigella sonnei 53G]
 gi|323174570|gb|EFZ60191.1| regulatory protein sdiA [Escherichia coli LT-68]
 gi|323937191|gb|EGB33471.1| autoinducer binding domain-containing protein [Escherichia coli
           E1520]
 gi|323972721|gb|EGB67922.1| autoinducer binding domain-containing protein [Escherichia coli
           TA007]
 gi|332343642|gb|AEE56976.1| regulatory protein SdiA [Escherichia coli UMNK88]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|332278913|ref|ZP_08391326.1| regulatory protein sdiA [Shigella sp. D9]
 gi|332101265|gb|EGJ04611.1| regulatory protein sdiA [Shigella sp. D9]
          Length = 244

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 181 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 240

Query: 243 NNIV 246
             ++
Sbjct: 241 TGLI 244


>gi|301018234|ref|ZP_07182749.1| autoinducer binding domain protein [Escherichia coli MS 69-1]
 gi|300399821|gb|EFJ83359.1| autoinducer binding domain protein [Escherichia coli MS 69-1]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|312199008|ref|YP_004019069.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311230344|gb|ADP83199.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 239

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG+ + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 176 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235


>gi|229143361|ref|ZP_04271792.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228640168|gb|EEK96567.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
          Length = 213

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAKVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|184156458|ref|YP_001844797.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii
           ACICU]
 gi|183208052|gb|ACC55450.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii
           ACICU]
          Length = 238

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 177 DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           DV + K +  LT RE E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  
Sbjct: 168 DVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKIS 227

Query: 236 AIAYAV 241
           A   AV
Sbjct: 228 AAIRAV 233


>gi|330811856|ref|YP_004356318.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379964|gb|AEA71314.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 237

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L W +EGKT+ E+  IL +S  TVN ++ S MRK     +  A+A A + +
Sbjct: 176 HLSPREIEVLRWSAEGKTASEVGRILCLSERTVNFHVCSCMRKLNVSNKISAVAKAAQIH 235

Query: 245 IV 246
           ++
Sbjct: 236 VI 237


>gi|301052287|ref|YP_003790498.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300374456|gb|ADK03360.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 213

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|218695523|ref|YP_002403190.1| DNA-binding transcriptional activator SdiA [Escherichia coli 55989]
 gi|300904802|ref|ZP_07122630.1| autoinducer binding domain protein [Escherichia coli MS 84-1]
 gi|218352255|emb|CAU98011.1| DNA-binding transcriptional activator [Escherichia coli 55989]
 gi|300403316|gb|EFJ86854.1| autoinducer binding domain protein [Escherichia coli MS 84-1]
 gi|315257253|gb|EFU37221.1| autoinducer binding domain protein [Escherichia coli MS 85-1]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|237705872|ref|ZP_04536353.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA]
 gi|26108586|gb|AAN80789.1|AE016762_42 Regulatory protein sdiA [Escherichia coli CFT073]
 gi|91072709|gb|ABE07590.1| regulatory protein SdiA [Escherichia coli UTI89]
 gi|226900629|gb|EEH86888.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA]
          Length = 244

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 181 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 240

Query: 243 NNIV 246
             ++
Sbjct: 241 TGLI 244


>gi|323961965|gb|EGB57564.1| autoinducer binding domain-containing protein [Escherichia coli
           H489]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|312967117|ref|ZP_07781335.1| regulatory protein sdiA [Escherichia coli 2362-75]
 gi|312288581|gb|EFR16483.1| regulatory protein sdiA [Escherichia coli 2362-75]
          Length = 228

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 165 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 224

Query: 243 NNIV 246
             ++
Sbjct: 225 TGLI 228


>gi|300935891|ref|ZP_07150848.1| autoinducer binding domain protein [Escherichia coli MS 21-1]
 gi|300458941|gb|EFK22434.1| autoinducer binding domain protein [Escherichia coli MS 21-1]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|253996413|ref|YP_003048477.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983092|gb|ACT47950.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Methylotenera mobilis JLW8]
          Length = 274

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 36/53 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE+E ++WI  GKT+ EI +IL IS+NTV +++  I +K     R+ A+A
Sbjct: 198 LSEREIEVISWIKAGKTNQEIGMILSISQNTVKSHLKRIFQKLNIGRRAQAVA 250


>gi|209919338|ref|YP_002293422.1| DNA-binding transcriptional activator SdiA [Escherichia coli SE11]
 gi|293446298|ref|ZP_06662720.1| regulatory protein sdiA [Escherichia coli B088]
 gi|209912597|dbj|BAG77671.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           SE11]
 gi|291323128|gb|EFE62556.1| regulatory protein sdiA [Escherichia coli B088]
          Length = 244

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 181 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 240

Query: 243 NNIV 246
             ++
Sbjct: 241 TGLI 244


>gi|157161388|ref|YP_001458706.1| DNA-binding transcriptional activator SdiA [Escherichia coli HS]
 gi|170019746|ref|YP_001724700.1| DNA-binding transcriptional activator SdiA [Escherichia coli ATCC
           8739]
 gi|218689909|ref|YP_002398121.1| DNA-binding transcriptional activator SdiA [Escherichia coli ED1a]
 gi|218705411|ref|YP_002412930.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           UMN026]
 gi|300899169|ref|ZP_07117448.1| autoinducer binding domain protein [Escherichia coli MS 198-1]
 gi|300928947|ref|ZP_07144451.1| autoinducer binding domain protein [Escherichia coli MS 187-1]
 gi|331673434|ref|ZP_08374202.1| regulatory protein SdiA [Escherichia coli TA280]
 gi|331683468|ref|ZP_08384069.1| regulatory protein SdiA [Escherichia coli H299]
 gi|157067068|gb|ABV06323.1| regulatory protein SdiA [Escherichia coli HS]
 gi|169754674|gb|ACA77373.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739]
 gi|218427473|emb|CAR08247.1| DNA-binding transcriptional activator [Escherichia coli ED1a]
 gi|218432508|emb|CAR13401.1| DNA-binding transcriptional activator [Escherichia coli UMN026]
 gi|300357228|gb|EFJ73098.1| autoinducer binding domain protein [Escherichia coli MS 198-1]
 gi|300463101|gb|EFK26594.1| autoinducer binding domain protein [Escherichia coli MS 187-1]
 gi|331069632|gb|EGI41019.1| regulatory protein SdiA [Escherichia coli TA280]
 gi|331079683|gb|EGI50880.1| regulatory protein SdiA [Escherichia coli H299]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|300951540|ref|ZP_07165374.1| autoinducer binding domain protein [Escherichia coli MS 116-1]
 gi|300956569|ref|ZP_07168849.1| autoinducer binding domain protein [Escherichia coli MS 175-1]
 gi|300316616|gb|EFJ66400.1| autoinducer binding domain protein [Escherichia coli MS 175-1]
 gi|300449215|gb|EFK12835.1| autoinducer binding domain protein [Escherichia coli MS 116-1]
 gi|323940421|gb|EGB36612.1| autoinducer binding domain-containing protein [Escherichia coli
           E482]
 gi|332089650|gb|EGI94752.1| regulatory protein sdiA [Shigella boydii 5216-82]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|296101736|ref|YP_003611882.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056195|gb|ADF60933.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + + + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMKFSKREREILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|311280044|ref|YP_003942275.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308749239|gb|ADO48991.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 216

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 35/184 (19%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRC------MALSEKDKYYN--VLQRPTELFCPVFHTLPEN 119
           LF  Q +DS     W F L  C      +  +    Y+N  +++ P  +   VFHT  + 
Sbjct: 58  LFDMQSIDSQAMHQWCFALQNCPKQFKVLLFNTPQHYHNRDIVEWP--MISGVFHTETDE 115

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                G+ N        V R        FPK             ++  Y           
Sbjct: 116 EHLIDGIKN--------VCRGE----KCFPK-------------VINDYIVQQLNLSHPQ 150

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +  ELT RE E L  + +G ++ EIA +L IS NTV  +I ++ +K + K R+ A+ +
Sbjct: 151 WNECVELTRREKEILCKLRQGASNIEIAHLLFISENTVKTHIYNLFKKLSVKNRTQAVFW 210

Query: 240 AVRN 243
           A RN
Sbjct: 211 ANRN 214


>gi|301029367|ref|ZP_07192464.1| autoinducer binding domain protein [Escherichia coli MS 196-1]
 gi|301645566|ref|ZP_07245495.1| autoinducer binding domain protein [Escherichia coli MS 146-1]
 gi|307138583|ref|ZP_07497939.1| DNA-binding transcriptional activator SdiA [Escherichia coli H736]
 gi|331642538|ref|ZP_08343673.1| regulatory protein SdiA [Escherichia coli H736]
 gi|299877793|gb|EFI86004.1| autoinducer binding domain protein [Escherichia coli MS 196-1]
 gi|301076098|gb|EFK90904.1| autoinducer binding domain protein [Escherichia coli MS 146-1]
 gi|323186308|gb|EFZ71658.1| regulatory protein sdiA [Escherichia coli 1357]
 gi|323948203|gb|EGB44191.1| autoinducer binding domain-containing protein [Escherichia coli
           H120]
 gi|324017952|gb|EGB87171.1| autoinducer binding domain protein [Escherichia coli MS 117-3]
 gi|324118970|gb|EGC12859.1| autoinducer binding domain-containing protein [Escherichia coli
           E1167]
 gi|331039336|gb|EGI11556.1| regulatory protein SdiA [Escherichia coli H736]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|169797684|ref|YP_001715477.1| autoinducer-binding transcriptional regulator [Acinetobacter
           baumannii AYE]
 gi|213155522|ref|YP_002317567.1| eR transcriptional regulator [Acinetobacter baumannii AB0057]
 gi|215485038|ref|YP_002327279.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB307-0294]
 gi|239503083|ref|ZP_04662393.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB900]
 gi|301348492|ref|ZP_07229233.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB056]
 gi|301513441|ref|ZP_07238678.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB058]
 gi|301597204|ref|ZP_07242212.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB059]
 gi|332853574|ref|ZP_08434826.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013150]
 gi|332869309|ref|ZP_08438707.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013113]
 gi|169150611|emb|CAM88520.1| putative Autoinducer-binding transcriptional regulator (LuxR
           family) [Acinetobacter baumannii AYE]
 gi|193076010|gb|ABO10598.2| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978]
 gi|213054682|gb|ACJ39584.1| eR transcriptional regulator [Acinetobacter baumannii AB0057]
 gi|213987791|gb|ACJ58090.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB307-0294]
 gi|323516195|gb|ADX90576.1| autoinducer-binding transcriptional regulator [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332728538|gb|EGJ59911.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013150]
 gi|332732817|gb|EGJ64032.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013113]
          Length = 238

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 177 DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           DV + K +  LT RE E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  
Sbjct: 168 DVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKIS 227

Query: 236 AIAYAV 241
           A   AV
Sbjct: 228 AAIRAV 233


>gi|126640216|ref|YP_001083200.1| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978]
          Length = 198

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 177 DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           DV + K +  LT RE E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  
Sbjct: 128 DVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKIS 187

Query: 236 AIAYAV 241
           A   AV
Sbjct: 188 AAIRAV 193


>gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 215

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 98/208 (47%), Gaps = 22/208 (10%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           ++++Y+  S + ++  +  QE     +V    P  +V  + + E D Y     +  RP  
Sbjct: 17  SISDYLEISGYTVISAENGQEAL--ELVDKHKPHLIVTDITMPEMDGYDLVKRIRSRPAF 74

Query: 108 LFCPVF----HTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPKGRII---LRDR 158
              PV     HT  ++       G DN Y    F++  + + +  L  + ++I   LR R
Sbjct: 75  RLLPVIFLTAHTAIQSRIRGYQLGCDN-YLPKPFELDELGVVIRALLERSQLIESELRSR 133

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           + E  ++     + F         +  LT RE + L  ++EG+++ +I   L +S  T+ 
Sbjct: 134 VSESPVVTNGATSTF-------SHEISLTEREQQVLDLLTEGRSNVKIGEKLHLSPRTIE 186

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            Y++S++RKT +  R+  + +A++N+++
Sbjct: 187 KYVSSLLRKTESNNRAELVRFALKNHLI 214


>gi|117624058|ref|YP_852971.1| DNA-binding transcriptional activator SdiA [Escherichia coli APEC
           O1]
 gi|161486200|ref|NP_754222.2| DNA-binding transcriptional activator SdiA [Escherichia coli
           CFT073]
 gi|162138422|ref|YP_541121.2| DNA-binding transcriptional activator SdiA [Escherichia coli UTI89]
 gi|191173269|ref|ZP_03034799.1| regulatory protein SdiA [Escherichia coli F11]
 gi|218558774|ref|YP_002391687.1| DNA-binding transcriptional activator SdiA [Escherichia coli S88]
 gi|218699520|ref|YP_002407149.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI39]
 gi|227885657|ref|ZP_04003462.1| LuxR family protein [Escherichia coli 83972]
 gi|300982244|ref|ZP_07175956.1| autoinducer binding domain protein [Escherichia coli MS 200-1]
 gi|300993973|ref|ZP_07180620.1| autoinducer binding domain protein [Escherichia coli MS 45-1]
 gi|301050730|ref|ZP_07197588.1| autoinducer binding domain protein [Escherichia coli MS 185-1]
 gi|306814260|ref|ZP_07448426.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101]
 gi|331647509|ref|ZP_08348601.1| regulatory protein SdiA [Escherichia coli M605]
 gi|115513182|gb|ABJ01257.1| DNA-binding transcriptional activator [Escherichia coli APEC O1]
 gi|190906386|gb|EDV65995.1| regulatory protein SdiA [Escherichia coli F11]
 gi|218365543|emb|CAR03270.1| DNA-binding transcriptional activator [Escherichia coli S88]
 gi|218369506|emb|CAR17273.1| DNA-binding transcriptional activator [Escherichia coli IAI39]
 gi|222033657|emb|CAP76398.1| Regulatory protein sdiA [Escherichia coli LF82]
 gi|227837230|gb|EEJ47696.1| LuxR family protein [Escherichia coli 83972]
 gi|281178978|dbj|BAI55308.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           SE15]
 gi|294493959|gb|ADE92715.1| regulatory protein SdiA [Escherichia coli IHE3034]
 gi|300297547|gb|EFJ53932.1| autoinducer binding domain protein [Escherichia coli MS 185-1]
 gi|300307314|gb|EFJ61834.1| autoinducer binding domain protein [Escherichia coli MS 200-1]
 gi|300406419|gb|EFJ89957.1| autoinducer binding domain protein [Escherichia coli MS 45-1]
 gi|305852419|gb|EFM52870.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101]
 gi|307553930|gb|ADN46705.1| DNA-binding transcriptional activator [Escherichia coli ABU 83972]
 gi|307626607|gb|ADN70911.1| DNA-binding transcriptional activator SdiA [Escherichia coli UM146]
 gi|312946508|gb|ADR27335.1| DNA-binding transcriptional activator SdiA [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315286610|gb|EFU46043.1| autoinducer binding domain protein [Escherichia coli MS 110-3]
 gi|315290297|gb|EFU49675.1| autoinducer binding domain protein [Escherichia coli MS 153-1]
 gi|315296532|gb|EFU55829.1| autoinducer binding domain protein [Escherichia coli MS 16-3]
 gi|320194372|gb|EFW69003.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           WV_060327]
 gi|323186796|gb|EFZ72116.1| regulatory protein sdiA [Escherichia coli RN587/1]
 gi|323952411|gb|EGB48284.1| autoinducer binding domain-containing protein [Escherichia coli
           H252]
 gi|323956313|gb|EGB52056.1| autoinducer binding domain-containing protein [Escherichia coli
           H263]
 gi|324007279|gb|EGB76498.1| autoinducer binding domain protein [Escherichia coli MS 57-2]
 gi|324013560|gb|EGB82779.1| autoinducer binding domain protein [Escherichia coli MS 60-1]
 gi|330911724|gb|EGH40234.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional
           activator [Escherichia coli AA86]
 gi|331043233|gb|EGI15371.1| regulatory protein SdiA [Escherichia coli M605]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|323702109|ref|ZP_08113777.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532991|gb|EGB22862.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 218

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D H  K   LT RE+E L  +++G+++ +IA  L IS  TV N++ +I +K     R+
Sbjct: 145 SVDHHDKKHSTLTERELEVLKQVAKGQSNKDIAKTLFISEKTVKNHLTNIFQKIGVADRT 204

Query: 235 GAIAYAVRNNIV 246
            A  YA++  +V
Sbjct: 205 QAALYAIKEKLV 216


>gi|293405402|ref|ZP_06649394.1| regulatory protein sdiA [Escherichia coli FVEC1412]
 gi|298381046|ref|ZP_06990645.1| regulatory protein sdiA [Escherichia coli FVEC1302]
 gi|291427610|gb|EFF00637.1| regulatory protein sdiA [Escherichia coli FVEC1412]
 gi|298278488|gb|EFI20002.1| regulatory protein sdiA [Escherichia coli FVEC1302]
          Length = 244

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 181 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 240

Query: 243 NNIV 246
             ++
Sbjct: 241 TGLI 244


>gi|260557627|ref|ZP_05829841.1| transcriptional activator protein phzR [Acinetobacter baumannii
           ATCC 19606]
 gi|260408800|gb|EEX02104.1| transcriptional activator protein phzR [Acinetobacter baumannii
           ATCC 19606]
          Length = 238

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 177 DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           DV + K +  LT RE E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  
Sbjct: 168 DVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKIS 227

Query: 236 AIAYAV 241
           A   AV
Sbjct: 228 AAIRAV 233


>gi|196041819|ref|ZP_03109108.1| transcriptional regulatory protein DegU [Bacillus cereus
           NVH0597-99]
 gi|229028432|ref|ZP_04184554.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|196027313|gb|EDX65931.1| transcriptional regulatory protein DegU [Bacillus cereus
           NVH0597-99]
 gi|228732881|gb|EEL83741.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 213

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|170683439|ref|YP_001743327.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           SMS-3-5]
 gi|256017886|ref|ZP_05431751.1| DNA-binding transcriptional activator SdiA [Shigella sp. D9]
 gi|307314177|ref|ZP_07593787.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|309795974|ref|ZP_07690387.1| autoinducer binding domain protein [Escherichia coli MS 145-7]
 gi|170521157|gb|ACB19335.1| regulatory protein SdiA [Escherichia coli SMS-3-5]
 gi|306906146|gb|EFN36664.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|308120424|gb|EFO57686.1| autoinducer binding domain protein [Escherichia coli MS 145-7]
 gi|315061216|gb|ADT75543.1| DNA-binding transcriptional activator [Escherichia coli W]
 gi|323378207|gb|ADX50475.1| transcriptional regulator, LuxR family [Escherichia coli KO11]
 gi|323968333|gb|EGB63740.1| autoinducer binding domain-containing protein [Escherichia coli
           M863]
 gi|327253047|gb|EGE64701.1| regulatory protein sdiA [Escherichia coli STEC_7v]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|146454419|gb|ABQ41883.1| LuxR [Acidovorax citrulli]
          Length = 242

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECLTW++ GK+S EI  I+ IS +TVN ++ + M K  T +R  A   A    
Sbjct: 178 KLTSREAECLTWVAYGKSSREIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLG 237

Query: 245 IV 246
           ++
Sbjct: 238 LI 239


>gi|228907986|ref|ZP_04071836.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851652|gb|EEM96456.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 213

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|193066393|ref|ZP_03047441.1| regulatory protein SdiA [Escherichia coli E22]
 gi|192925978|gb|EDV80624.1| regulatory protein SdiA [Escherichia coli E22]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|320198610|gb|EFW73210.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           EC4100B]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|256022426|ref|ZP_05436291.1| DNA-binding transcriptional activator SdiA [Escherichia sp.
           4_1_40B]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|229156108|ref|ZP_04284207.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627429|gb|EEK84157.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 213

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|215487121|ref|YP_002329552.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215265193|emb|CAS09582.1| DNA-binding transcriptional activator [Escherichia coli O127:H6
           str. E2348/69]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|27376173|ref|NP_767702.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349312|dbj|BAC46327.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 242

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E ++W S+GK++ EI  IL I++ T   ++A+  RK     R+ A+A A+R+ I
Sbjct: 180 LTPREREVISWASQGKSAWEIGEILHITQRTAEEHLATAARKLGAVNRTHAVALAIRHKI 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|191168286|ref|ZP_03030079.1| regulatory protein SdiA [Escherichia coli B7A]
 gi|194429919|ref|ZP_03062429.1| regulatory protein SdiA [Escherichia coli B171]
 gi|218554500|ref|YP_002387413.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI1]
 gi|260844320|ref|YP_003222098.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O103:H2 str. 12009]
 gi|260868508|ref|YP_003234910.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O111:H- str. 11128]
 gi|293410275|ref|ZP_06653851.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300818660|ref|ZP_07098868.1| autoinducer binding domain protein [Escherichia coli MS 107-1]
 gi|300925008|ref|ZP_07140932.1| autoinducer binding domain protein [Escherichia coli MS 182-1]
 gi|301327706|ref|ZP_07220912.1| autoinducer binding domain protein [Escherichia coli MS 78-1]
 gi|331668610|ref|ZP_08369458.1| regulatory protein SdiA [Escherichia coli TA271]
 gi|331677801|ref|ZP_08378476.1| regulatory protein SdiA [Escherichia coli H591]
 gi|190901658|gb|EDV61414.1| regulatory protein SdiA [Escherichia coli B7A]
 gi|194412008|gb|EDX28320.1| regulatory protein SdiA [Escherichia coli B171]
 gi|218361268|emb|CAQ98852.1| DNA-binding transcriptional activator [Escherichia coli IAI1]
 gi|257759467|dbj|BAI30964.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O103:H2 str. 12009]
 gi|257764864|dbj|BAI36359.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O111:H- str. 11128]
 gi|284921829|emb|CBG34902.1| regulatory protein [Escherichia coli 042]
 gi|291470743|gb|EFF13227.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300418843|gb|EFK02154.1| autoinducer binding domain protein [Escherichia coli MS 182-1]
 gi|300528832|gb|EFK49894.1| autoinducer binding domain protein [Escherichia coli MS 107-1]
 gi|300845750|gb|EFK73510.1| autoinducer binding domain protein [Escherichia coli MS 78-1]
 gi|323158600|gb|EFZ44614.1| regulatory protein sdiA [Escherichia coli E128010]
 gi|323180833|gb|EFZ66373.1| regulatory protein sdiA [Escherichia coli 1180]
 gi|331063804|gb|EGI35715.1| regulatory protein SdiA [Escherichia coli TA271]
 gi|331074261|gb|EGI45581.1| regulatory protein SdiA [Escherichia coli H591]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|331663414|ref|ZP_08364324.1| regulatory protein SdiA [Escherichia coli TA143]
 gi|323977903|gb|EGB72989.1| autoinducer binding domain-containing protein [Escherichia coli
           TW10509]
 gi|331059213|gb|EGI31190.1| regulatory protein SdiA [Escherichia coli TA143]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|187928756|ref|YP_001899243.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187930011|ref|YP_001900498.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187725646|gb|ACD26811.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|187726901|gb|ACD28066.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 201

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           L++  Q  + +    H      +L+ REVE L W + GKTS EIA ILG+S+ TV+ ++ 
Sbjct: 116 LMSIVQTRLARRPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +   K    TR  A+  A  + I+
Sbjct: 176 NAREKLGVATRIEAVVRASSSGII 199


>gi|47568085|ref|ZP_00238790.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|229042495|ref|ZP_04190240.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229108243|ref|ZP_04237865.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229194950|ref|ZP_04321731.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|47555239|gb|EAL13585.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|228588518|gb|EEK46555.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228675259|gb|EEL30481.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228726848|gb|EEL78060.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 213

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|288922222|ref|ZP_06416420.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288346413|gb|EFC80744.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 239

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG+ + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 176 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235


>gi|228950550|ref|ZP_04112691.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809127|gb|EEM55607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 213

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|328542134|ref|YP_004302243.1| LuxR family transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326411884|gb|ADZ68947.1| LuxR family transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 217

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE ECL W++ GKT  EI++ILGIS  TV  +  +I  K  T +R   I  AVR  +
Sbjct: 155 LSPRERECLIWLANGKTRWEISLILGISEETVKYHFKNIRAKFGTYSRHEIIIQAVRLGL 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|296126426|ref|YP_003633678.1| LuxR family transcriptional regulator [Brachyspira murdochii DSM
           12563]
 gi|296018242|gb|ADG71479.1| transcriptional regulator, LuxR family [Brachyspira murdochii DSM
           12563]
          Length = 320

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 36/49 (73%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            LT RE E L+++ +GKT+ E+++IL IS NTVNN++A+I  K+  K R
Sbjct: 263 NLTRREREILSYLLDGKTNKEVSLILDISLNTVNNHVANIYEKSGVKNR 311


>gi|291441190|ref|ZP_06580580.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291344085|gb|EFE71041.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 133

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G    LT R+   L+ ++EG  + +IA++LG S +TV N I  IM +   + R+ A+A+
Sbjct: 67  GGGRPALTARQASVLSLMAEGYGNADIALLLGCSEHTVKNVIYEIMARLQARNRAHAVAH 126

Query: 240 AVRNNIV 246
           AVR+ +V
Sbjct: 127 AVRHGLV 133


>gi|238926042|ref|YP_002939560.1| two-component response regulator (extracellular proteinase response
           regulator) [Eubacterium rectale ATCC 33656]
 gi|238877719|gb|ACR77426.1| two-component response regulator (extracellular proteinase response
           regulator) [Eubacterium rectale ATCC 33656]
 gi|291526556|emb|CBK92143.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale DSM 17629]
 gi|291529198|emb|CBK94784.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale M104/1]
          Length = 214

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+ A  + M +  +     D  LT RE+E L  ++ GK + +IA  + IS  TV N+I+
Sbjct: 129 SLIPALNSKMIQKNEDELKIDA-LTKREMEVLKEMAVGKFNRDIAKEMKISERTVKNHIS 187

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           SI +K     R+ A  +A+RNNI+
Sbjct: 188 SIFKKLEVTDRTQAAVFAIRNNII 211


>gi|330958109|gb|EGH58369.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 254

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L  
Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDEKMRSCTAIKLTRRERECLSWSAEGLTAREIADQLNR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  TV  ++ S M+K   K R  A+  AV 
Sbjct: 219 SVATVTLHLNSAMQKLGAKNRVQAVVRAVH 248


>gi|312973873|ref|ZP_07788045.1| regulatory protein sdiA [Escherichia coli 1827-70]
 gi|310332468|gb|EFP99703.1| regulatory protein sdiA [Escherichia coli 1827-70]
          Length = 221

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 158 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 217

Query: 243 NNIV 246
             ++
Sbjct: 218 TGLI 221


>gi|196047172|ref|ZP_03114389.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108]
 gi|229182965|ref|ZP_04310198.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|196022042|gb|EDX60732.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108]
 gi|228600589|gb|EEK58176.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 213

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|158317264|ref|YP_001509772.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112669|gb|ABW14866.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 250

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG+ + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 187 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 246


>gi|239932840|ref|ZP_04689793.1| LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC
           14672]
          Length = 144

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G    LT R+   L+ ++EG  + +IA++LG S +TV N I  IM +   + R+ A+A+
Sbjct: 78  GGGRPALTARQASVLSLMAEGYGNADIALLLGCSEHTVKNVIYEIMARLQARNRAHAVAH 137

Query: 240 AVRNNIV 246
           AVR+ +V
Sbjct: 138 AVRHGLV 144


>gi|228918143|ref|ZP_04081650.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841505|gb|EEM86641.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 213

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|209526062|ref|ZP_03274594.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209493450|gb|EDZ93773.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 222

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 99/210 (47%), Gaps = 19/210 (9%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           ++++Y+  S ++++     QE     +V    P  +V  +A+ E D +     V  +P  
Sbjct: 17  SISDYLEMSGYMVISATNGQEAL--ELVEKHQPHLIVTDIAMPEMDGFELVKRVRSQPGF 74

Query: 108 LFCPVF----HTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL---RDR 158
              PV     HT  E        G DN Y    F++  + + +  L  + ++I    R R
Sbjct: 75  RLLPVIFLTAHTSTEERIRGYQLGCDN-YLPKPFELDELGVVIRALLERSQLIEAEWRSR 133

Query: 159 LWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + E   L+ + +  +K +  H     +  LT RE + L  ++EG ++ +I   L +S  T
Sbjct: 134 INEP--LSNHTSPRYKRHHFHSLSTTNIHLTEREQQVLNLLTEGLSNVKIGNSLHLSSRT 191

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  Y++S++RKT +  R+  + +A+ N+++
Sbjct: 192 VEKYVSSLLRKTDSSNRAALVRFALENDLI 221


>gi|206972973|ref|ZP_03233895.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134]
 gi|228924979|ref|ZP_04088109.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229182326|ref|ZP_04309600.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229194039|ref|ZP_04320933.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|206731857|gb|EDZ49057.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134]
 gi|228589439|gb|EEK47364.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228601135|gb|EEK58682.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228834642|gb|EEM80151.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 213

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|167840217|ref|ZP_02466901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           thailandensis MSMB43]
          Length = 230

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 26/137 (18%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL-----------RDRLWEIGLLAAYQANM 172
           AG+DN             I + L  P GR++L            D  W    L   Q N+
Sbjct: 104 AGLDNG------------ISIPLHQPLGRVLLVSLSGTAPTHDADAKWRNAYLLGMQFNL 151

Query: 173 -FKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            F+S            LT RE  CLTW++ GK+S  IA +L IS+ TV+ +I + M K  
Sbjct: 152 QFQSMRTCSPIPPSVHLTDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLN 211

Query: 230 TKTRSGAIAYAVRNNIV 246
           T++R+ A   A R  ++
Sbjct: 212 TRSRTFAAVKATRQGLI 228


>gi|241203502|ref|YP_002974598.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857392|gb|ACS55059.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 65

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E + W++ GKT+ EI  ILGIS  TVN +IA+   +      +  +A A+RN I
Sbjct: 4   VTPRETEVIRWMAAGKTAAEIGTILGISHITVNTHIANAKARLGVFKDTALVAAALRNGI 63

Query: 246 V 246
           +
Sbjct: 64  I 64


>gi|332875591|ref|ZP_08443403.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6014059]
 gi|332736164|gb|EGJ67179.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6014059]
          Length = 238

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 177 DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           DV + K +  LT RE E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  
Sbjct: 168 DVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKIS 227

Query: 236 AIAYAV 241
           A   AV
Sbjct: 228 AAIRAV 233


>gi|297538563|ref|YP_003674332.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257910|gb|ADI29755.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 315

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           F+LT RE E L W ++GKTS +I  ILG S  TVN ++  +  K   +TR+ A A A
Sbjct: 251 FKLTSRESEVLYWATKGKTSRDIGDILGSSPRTVNKHLEHVFVKLGVETRTAAAALA 307


>gi|220920519|ref|YP_002495820.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945125|gb|ACL55517.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 123

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G D  LT RE+E L+ ++EG ++  IA  LGIS +T   ++ S++ K     R+ A+A+
Sbjct: 55  AGPDVGLTPREIEVLSLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGRTDAVAH 114

Query: 240 AVRNNIV 246
           A R  ++
Sbjct: 115 AARRGVI 121


>gi|241518604|ref|YP_002979232.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863017|gb|ACS60681.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 864

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 39/55 (70%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L W+  GK++ EIA +L +S  TV+++++SI+ K   KTR+ A ++A
Sbjct: 803 LTTREMDVLRWVDLGKSNGEIAALLFVSAKTVDHHVSSILAKLNAKTRTAAASHA 857


>gi|330879513|gb|EGH13662.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 254

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L  
Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  T+  ++ S M+K   K R  A+  AV 
Sbjct: 219 SVATITLHLNSAMQKLGAKNRVQAVVRAVH 248


>gi|159900552|ref|YP_001546799.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893591|gb|ABX06671.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 250

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 39/57 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ++ RE+E L  ++ G+T+ EIA  L IS  TV N+I+SI+RK A   R+ A+ +A++
Sbjct: 178 MSPREIEVLELVAAGQTNKEIAARLEISNQTVKNHISSILRKLAVNDRTQAVVFALQ 234


>gi|289811480|ref|ZP_06542109.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 115

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 46  DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 105

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 106 ACYAAATGLI 115


>gi|300693076|ref|YP_003749049.1| two component heavy metal response transcriptional regulator
           [Ralstonia solanacearum PSI07]
 gi|299075113|emb|CBJ34395.1| Two component heavy metal response transcriptional regulator
           [Ralstonia solanacearum PSI07]
          Length = 201

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L W + GKTS EIA ILG+S+ TV+ +I +  +K    TR  A+  A    I
Sbjct: 139 LSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAGI 198

Query: 246 V 246
           +
Sbjct: 199 I 199


>gi|297618086|ref|YP_003703245.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145923|gb|ADI02680.1| two component transcriptional regulator, LuxR family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 213

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE + L  + +G ++ E+A  L IS  TV N++ SI RK   K R+ A+ YA++
Sbjct: 147 EMKLTKRERDVLELLVKGYSNKEVAAALFISEKTVKNHLTSIFRKLEVKDRTQAVIYALK 206

Query: 243 NNIV 246
           N +V
Sbjct: 207 NKVV 210


>gi|16129863|ref|NP_416426.1| quorum-sensing transcriptional activator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89108751|ref|AP_002531.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. W3110]
 gi|170081564|ref|YP_001730884.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901125|ref|YP_002926921.1| DNA-binding transcriptional activator [Escherichia coli BW2952]
 gi|253773131|ref|YP_003035962.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|2506570|sp|P07026|SDIA_ECOLI RecName: Full=Regulatory protein SdiA
 gi|1736575|dbj|BAA15736.1| DNA-binding transcriptional activator [Escherichia coli str. K12
           substr. W3110]
 gi|1788224|gb|AAC74983.1| quorum-sensing transcriptional activator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169889399|gb|ACB03106.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. DH10B]
 gi|238860878|gb|ACR62876.1| DNA-binding transcriptional activator [Escherichia coli BW2952]
 gi|253324175|gb|ACT28777.1| transcriptional regulator, LuxR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448967|gb|ACX39389.1| transcriptional regulator, LuxR family [Escherichia coli DH1]
 gi|315136553|dbj|BAJ43712.1| DNA-binding transcriptional activator SdiA [Escherichia coli DH1]
          Length = 240

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|207722648|ref|YP_002253084.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206587830|emb|CAQ18412.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 201

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L W + GKTS EIA ILG+S+ TV+ +I +  +K    TR  A+  A    I
Sbjct: 139 LSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAGI 198

Query: 246 V 246
           +
Sbjct: 199 I 199


>gi|115265509|dbj|BAF32771.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv.
           actinidiae]
 gi|330965240|gb|EGH65500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 254

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L  
Sbjct: 159 RQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  T+  ++ S M+K   K R  A+  AV 
Sbjct: 219 SVATITLHLNSAMQKLGAKNRVQAVVRAVH 248


>gi|260598411|ref|YP_003210982.1| DNA-binding transcriptional activator SdiA [Cronobacter turicensis
           z3032]
 gi|260217588|emb|CBA31841.1| Regulatory protein sdiA [Cronobacter turicensis z3032]
          Length = 241

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + +L+ RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA 
Sbjct: 178 EMKLSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAA 236


>gi|86739750|ref|YP_480150.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86566612|gb|ABD10421.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 238

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG+ + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 175 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 234


>gi|193890916|gb|ACF28617.1| quorum sensing regulator [Mesorhizobium tianshanense]
          Length = 275

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W SEGKT  E  VILG+S +TV  Y+ S   K    + + A + A ++ +
Sbjct: 211 LSPRELECLRWTSEGKTVWECGVILGLSPHTVRCYLESARHKLGASSNTHAASLATKSGL 270

Query: 246 V 246
           +
Sbjct: 271 L 271


>gi|209551411|ref|YP_002283328.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537167|gb|ACI57102.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 251

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L +++EG TS EI  +L IS +TV+ Y+  +  K   K R  A+A A R
Sbjct: 187 DTPLTRREMEILHYLAEGMTSMEIGKVLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFR 246

Query: 243 NNIV 246
           + ++
Sbjct: 247 HRLI 250


>gi|110834848|ref|YP_693707.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis
           SK2]
 gi|110647959|emb|CAL17435.1| DNA-binding response regulator, LuxR family [Alcanivorax
           borkumensis SK2]
          Length = 301

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +T RE + L WI+ GKT+ EIA IL +S  TVN ++  I RK   + R+ A A  ++
Sbjct: 237 LHVTHRESQVLVWIAHGKTNREIAQILELSPRTVNKHLEQIFRKLGVENRTAAAAMVIQ 295


>gi|53716260|ref|YP_106160.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53722590|ref|YP_111575.1| N-acylhomoserine lactone-dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|67640560|ref|ZP_00439362.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei GB8 horse 4]
 gi|76818021|ref|YP_335776.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|124383134|ref|YP_001025820.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126442943|ref|YP_001063209.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 668]
 gi|126446904|ref|YP_001077903.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei NCTC 10247]
 gi|126457976|ref|YP_001076161.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106a]
 gi|134281979|ref|ZP_01768685.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 305]
 gi|167002385|ref|ZP_02268175.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei PRL-20]
 gi|167724282|ref|ZP_02407518.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei DM98]
 gi|167743255|ref|ZP_02416029.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 14]
 gi|167820433|ref|ZP_02452113.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 91]
 gi|167828803|ref|ZP_02460274.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 9]
 gi|167850259|ref|ZP_02475767.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei B7210]
 gi|167898862|ref|ZP_02486263.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 7894]
 gi|167907182|ref|ZP_02494387.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei NCTC 13177]
 gi|167915548|ref|ZP_02502639.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 112]
 gi|167923392|ref|ZP_02510483.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei BCC215]
 gi|217425142|ref|ZP_03456637.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 576]
 gi|226195987|ref|ZP_03791573.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pakistan 9]
 gi|237510506|ref|ZP_04523221.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313819|ref|ZP_04812836.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106b]
 gi|254176584|ref|ZP_04883242.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei ATCC 10399]
 gi|254185131|ref|ZP_04891720.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1655]
 gi|254186897|ref|ZP_04893413.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254194457|ref|ZP_04900889.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei S13]
 gi|254201028|ref|ZP_04907393.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei FMH]
 gi|254204993|ref|ZP_04911346.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei JHU]
 gi|254264301|ref|ZP_04955166.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1710a]
 gi|254301416|ref|ZP_04968860.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 406e]
 gi|254359112|ref|ZP_04975384.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei 2002721280]
 gi|52213004|emb|CAH39042.1| putative N-acylhomoserine lactone-dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|52422230|gb|AAU45800.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           23344]
 gi|76582494|gb|ABA51968.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710b]
 gi|126222434|gb|ABN85939.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 668]
 gi|126231744|gb|ABN95157.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106a]
 gi|126239758|gb|ABO02870.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei NCTC 10247]
 gi|134246508|gb|EBA46596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 305]
 gi|147748640|gb|EDK55715.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei FMH]
 gi|147754579|gb|EDK61643.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei JHU]
 gi|148028299|gb|EDK86259.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei 2002721280]
 gi|156105360|gb|ABU49179.1| BpsR3 [Burkholderia pseudomallei]
 gi|157810944|gb|EDO88114.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 406e]
 gi|157934581|gb|EDO90251.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697626|gb|EDP87596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei ATCC 10399]
 gi|169651208|gb|EDS83901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei S13]
 gi|184215723|gb|EDU12704.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1655]
 gi|217391747|gb|EEC31774.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 576]
 gi|225931880|gb|EEH27881.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pakistan 9]
 gi|235002711|gb|EEP52135.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238521303|gb|EEP84756.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei GB8 horse 4]
 gi|242137058|gb|EES23461.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106b]
 gi|243061949|gb|EES44135.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei PRL-20]
 gi|254215303|gb|EET04688.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1710a]
 gi|261827149|gb|ABM99449.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
          Length = 230

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 26/137 (18%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL-----------RDRLWEIGLLAAYQANM 172
           AG+DN             I + L  P GR++L            D  W    L   Q N+
Sbjct: 104 AGLDNG------------ISIPLHQPLGRVLLVSLSGTAPTHDADAKWRNAYLLGMQFNL 151

Query: 173 -FKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            F+S            LT RE  CLTW++ GK+S  IA +L IS+ TV+ +I + M K  
Sbjct: 152 QFQSMRTCRPIPPSVHLTDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLN 211

Query: 230 TKTRSGAIAYAVRNNIV 246
           T++R+ A   A R  ++
Sbjct: 212 TRSRTFAAVKATRQGLI 228


>gi|300716150|ref|YP_003740953.1| regulatory protein [Erwinia billingiae Eb661]
 gi|299061986|emb|CAX59102.1| Regulatory protein [Erwinia billingiae Eb661]
          Length = 240

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + EL+ RE+E L W +EGKTS EI++IL IS NTVN +   + ++     ++   +YA 
Sbjct: 177 NMELSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQVASYAA 235


>gi|83749508|ref|ZP_00946497.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|207738514|ref|YP_002256907.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83723820|gb|EAP71009.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|206591882|emb|CAQ58788.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 201

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L W + GKTS EIA ILG+S+ TV+ +I +  +K    TR  A+  A    I
Sbjct: 139 LSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAGI 198

Query: 246 V 246
           +
Sbjct: 199 I 199


>gi|320191891|gb|EFW66538.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. EC1212]
          Length = 240

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|188491931|ref|ZP_02999201.1| regulatory protein SdiA [Escherichia coli 53638]
 gi|260855896|ref|YP_003229787.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O26:H11 str. 11368]
 gi|331653323|ref|ZP_08354328.1| regulatory protein SdiA [Escherichia coli M718]
 gi|188487130|gb|EDU62233.1| regulatory protein SdiA [Escherichia coli 53638]
 gi|257754545|dbj|BAI26047.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O26:H11 str. 11368]
 gi|315617861|gb|EFU98459.1| regulatory protein sdiA [Escherichia coli 3431]
 gi|323152751|gb|EFZ39023.1| regulatory protein sdiA [Escherichia coli EPECa14]
 gi|331049421|gb|EGI21493.1| regulatory protein SdiA [Escherichia coli M718]
          Length = 240

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|293415226|ref|ZP_06657869.1| regulatory protein sdiA [Escherichia coli B185]
 gi|291432874|gb|EFF05853.1| regulatory protein sdiA [Escherichia coli B185]
          Length = 244

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 181 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 240

Query: 243 NNIV 246
             ++
Sbjct: 241 TGLI 244


>gi|194434963|ref|ZP_03067206.1| regulatory protein SdiA [Shigella dysenteriae 1012]
 gi|194416798|gb|EDX32924.1| regulatory protein SdiA [Shigella dysenteriae 1012]
 gi|320178182|gb|EFW53159.1| DNA-binding transcriptional activator SdiA [Shigella boydii ATCC
           9905]
 gi|332095461|gb|EGJ00482.1| regulatory protein sdiA [Shigella dysenteriae 155-74]
          Length = 240

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|156933489|ref|YP_001437405.1| DNA-binding transcriptional activator SdiA [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156531743|gb|ABU76569.1| hypothetical protein ESA_01307 [Cronobacter sakazakii ATCC BAA-894]
          Length = 241

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + +L+ RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA 
Sbjct: 178 EMKLSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAA 236


>gi|320652407|gb|EFX20705.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H- str. H 2687]
          Length = 240

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|218514308|ref|ZP_03511148.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 254

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 34/51 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A
Sbjct: 184 LTDREIDCLNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQA 234


>gi|15802351|ref|NP_288377.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 EDL933]
 gi|15831908|ref|NP_310681.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751842|ref|ZP_02776864.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113]
 gi|168758227|ref|ZP_02783234.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401]
 gi|168771520|ref|ZP_02796527.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486]
 gi|168777340|ref|ZP_02802347.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196]
 gi|168790328|ref|ZP_02815335.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869]
 gi|168802260|ref|ZP_02827267.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508]
 gi|195939220|ref|ZP_03084602.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810274|ref|ZP_03252150.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206]
 gi|208816575|ref|ZP_03257695.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045]
 gi|208820421|ref|ZP_03260741.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042]
 gi|209399275|ref|YP_002271030.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115]
 gi|217329032|ref|ZP_03445113.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588]
 gi|254793566|ref|YP_003078403.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. TW14359]
 gi|261227589|ref|ZP_05941870.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255819|ref|ZP_05948352.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283093|ref|YP_003499911.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str.
           CB9615]
 gi|12516014|gb|AAG56931.1|AE005414_8 transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362122|dbj|BAB36077.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767387|gb|EDU31231.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196]
 gi|188014167|gb|EDU52289.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113]
 gi|189354905|gb|EDU73324.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401]
 gi|189359736|gb|EDU78155.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486]
 gi|189370214|gb|EDU88630.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869]
 gi|189375707|gb|EDU94123.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508]
 gi|208724790|gb|EDZ74497.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206]
 gi|208730918|gb|EDZ79607.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045]
 gi|208740544|gb|EDZ88226.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042]
 gi|209160675|gb|ACI38108.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115]
 gi|209767028|gb|ACI81826.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767030|gb|ACI81827.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767032|gb|ACI81828.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767034|gb|ACI81829.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767036|gb|ACI81830.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|217318379|gb|EEC26806.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588]
 gi|254592966|gb|ACT72327.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. TW14359]
 gi|290762966|gb|ADD56927.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str.
           CB9615]
 gi|320647124|gb|EFX15957.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H- str. 493-89]
 gi|320658009|gb|EFX25771.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320658581|gb|EFX26275.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668479|gb|EFX35306.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326342324|gb|EGD66105.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. 1044]
 gi|326344831|gb|EGD68578.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. 1125]
          Length = 240

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|156742230|ref|YP_001432359.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156233558|gb|ABU58341.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 254

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  I+ G ++ EIA  L IS  TV N+I+SI+RK +   R+ A+ YA+R
Sbjct: 173 LSDREIEVLERIAAGGSNREIAEALHISTQTVKNHISSILRKLSLNDRTQAVLYALR 229


>gi|146312149|ref|YP_001177223.1| DNA-binding transcriptional activator SdiA [Enterobacter sp. 638]
 gi|145319025|gb|ABP61172.1| transcriptional activator SdiA [Enterobacter sp. 638]
          Length = 240

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + + + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMKFSKREKEILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 236

Query: 243 NNIV 246
              +
Sbjct: 237 TGFI 240


>gi|170727337|ref|YP_001761363.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812684|gb|ACA87268.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 250

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 32/194 (16%)

Query: 64  VRWD-LFQEQK---LDSIVSSDWPF-------DLVRCMALSEKDKYYNVLQRPTELFCPV 112
           V WD ++Q++K   +D +VS    F        +   + LSE    +N L+R  E+    
Sbjct: 78  VEWDNIYQKKKFQYIDPVVSCSASFRRSFNWASVPSMITLSEVQ--FNFLERAQEM---- 131

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
                       G+       +F   +I   L +    G  +  ++L  + L+ A  A  
Sbjct: 132 ------------GLKEGASIGSFSTRQIYKELTITSVCGCSLNPEQLASLELINAVSAQA 179

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K   +   K   LTGRE E L W SEGK+S EI +I  I+  TV  ++ +I +K   + 
Sbjct: 180 MKRLILPAEK---LTGRESEILAWSSEGKSSWEIGMICSITERTVKFHLKNIYKKLNVQN 236

Query: 233 RSGAIAYAVRNNIV 246
           R+ AI  A+R  ++
Sbjct: 237 RAQAIVCAIRLGLI 250


>gi|320641764|gb|EFX11152.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. G5101]
          Length = 240

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|304317230|ref|YP_003852375.1| LuxR family transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778732|gb|ADL69291.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 210

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L+ I+EG ++ EIA  L +S  TV N++ +I RK   K R+ A  Y ++NN
Sbjct: 144 ELTDREMQILSLIAEGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIYLLKNN 203


>gi|84498193|ref|ZP_00996990.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381693|gb|EAP97576.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 202

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ GK + EIA  L IS NTV N++ +I+ K    +R  A  YA+R N+
Sbjct: 138 LTERELEVLGLVARGKANKEIATQLFISENTVKNHVRNILEKLQLHSRVEAALYAMRRNL 197

Query: 246 V 246
           +
Sbjct: 198 I 198


>gi|288960338|ref|YP_003450678.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912646|dbj|BAI74134.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 287

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L W S GKTS E  ++LG+S  TVN Y+ +  +K    T+  A A AVR  
Sbjct: 226 KLSPREREVLDWASRGKTSWETGMVLGLSEKTVNFYLRNACQKMNAATKVQAAAQAVREG 285

Query: 245 IV 246
           ++
Sbjct: 286 LI 287


>gi|148658406|ref|YP_001278611.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570516|gb|ABQ92661.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 246

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ L  ++ G T+  IA  L IS  TV N+I+SI+RK A   R+ A+ YA+R
Sbjct: 176 LSPRELQVLELVAAGHTNKAIAQSLDISNQTVKNHISSILRKLAVNDRTQAVVYAMR 232


>gi|197344631|gb|ACH69663.1| LuxR family transcriptional regulator [uncultured bacterium]
          Length = 238

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W+++GK++  IA IL IS +TV  Y+   +RK    TR  A+A  V   +
Sbjct: 177 LSPRELECLRWVAQGKSNTVIADILKISDDTVAFYLRGALRKLGVSTRMQAVALCVTFGL 236

Query: 246 V 246
           +
Sbjct: 237 I 237


>gi|20808107|ref|NP_623278.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|254479031|ref|ZP_05092387.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516692|gb|AAM24882.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035027|gb|EEB75745.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 208

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  +S+G ++ EIA  L +S  TV N++ +I RK   K R+ A  Y ++N 
Sbjct: 144 ELTPREIEILKLLSQGYSNKEIAQKLFLSEKTVKNHVYNIFRKLGVKDRTQAAIYMLKNQ 203

Query: 245 IV 246
            +
Sbjct: 204 TI 205


>gi|329944887|ref|ZP_08292914.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529698|gb|EGF56594.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 234

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 6/126 (4%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSYDVHWGK-- 182
           ++   SL   + +   G ++L P    I+ D  RLW  G     ++   ++         
Sbjct: 109 EDGASSLAGAIRQAVAGNLVLSPTSSAIISDQARLWANGSAQPSESTSKQTQTQQSASPL 168

Query: 183 --DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE E LT + + KT+ +IA  L +S  TV  ++++I+ K   + R GA+ YA
Sbjct: 169 PHGIPLSEREREVLTLVVDAKTNKQIATRLRLSEATVKTHVSAIIAKLGVQDRVGAVVYA 228

Query: 241 VRNNIV 246
           +++N+V
Sbjct: 229 LQHNLV 234


>gi|43288|emb|CAA27327.1| unnamed protein product [Escherichia coli]
          Length = 241

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 178 EMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 237

Query: 243 NNIV 246
             ++
Sbjct: 238 TGLI 241


>gi|254504710|ref|ZP_05116861.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222440781|gb|EEE47460.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 248

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L+P GR+   + L+ +   A  +    ++  V    +F+LT RE E L WI++GK++ +I
Sbjct: 154 LYPLGRVGPDENLFRV--TAEDEEGQVRALQV----EFQLTQREAEVLIWIAKGKSNKDI 207

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             IL +S  TVN ++  I  K   + R+ A   A 
Sbjct: 208 GEILNLSPRTVNKHLEQIFVKLGVENRASAAVRAA 242


>gi|209548400|ref|YP_002280317.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534156|gb|ACI54091.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 240

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  E T  E++CL   + G+   EIA +L ++ N VNN+I S ++K    TR+ A+  A+
Sbjct: 174 KPIEFTRNELDCLRLTAGGRKGAEIAKLLDLTENAVNNHIGSAIKKLGCTTRTQAVVSAL 233

Query: 242 RNNIV 246
           R NI+
Sbjct: 234 RLNIL 238


>gi|157145292|ref|YP_001452611.1| DNA-binding transcriptional activator SdiA [Citrobacter koseri ATCC
           BAA-895]
 gi|157082497|gb|ABV12175.1| hypothetical protein CKO_01029 [Citrobacter koseri ATCC BAA-895]
          Length = 240

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 177 EMRFSKREKEILKWTAEGKTSSEIAMILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 TGLI 240


>gi|148655770|ref|YP_001275975.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148567880|gb|ABQ90025.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 254

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  I+ G ++ EIA  L IS  TV N+I+SI+RK +   R+ A+ YA+R
Sbjct: 173 LSDREIEVLERIAAGGSNREIAEALHISTQTVKNHISSILRKLSLNDRTQAVLYALR 229


>gi|325971781|ref|YP_004247972.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324027019|gb|ADY13778.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy]
          Length = 295

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 169 QANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +A + KS ++  G  +++ +T RE   +  IS+G T+ EIA  LGIS NTVNN++A+I  
Sbjct: 218 RAEVVKSKELVLGDLEEYHITEREFAVIQLISKGLTNKEIASQLGISANTVNNHVANIYG 277

Query: 227 KTATKTR 233
           KT  ++R
Sbjct: 278 KTQVRSR 284


>gi|323488502|ref|ZP_08093746.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2]
 gi|323397719|gb|EGA90521.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2]
          Length = 211

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 43/65 (66%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT RE+E L  + EG ++ +IA  L IS  TV  ++++I +K   K+RS AI +AV
Sbjct: 144 EDKTLTPREMEVLLVLVEGLSNKDIATRLYISDKTVKIHVSNIFKKFDVKSRSQAIIFAV 203

Query: 242 RNNIV 246
           +NN+V
Sbjct: 204 QNNLV 208


>gi|258592172|emb|CBE68481.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 367

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT RE E L W++ GKT+ E+A ILG+S  TV  ++  I +K   +TR  A
Sbjct: 304 DLTRREAEVLLWVAHGKTNVEVAEILGLSSRTVQKHLEHIFKKLGVETRVAA 355


>gi|320184745|gb|EFW59537.1| DNA-binding transcriptional activator SdiA [Shigella flexneri CDC
           796-83]
          Length = 159

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 96  EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 155

Query: 243 NNIV 246
             ++
Sbjct: 156 TGLI 159


>gi|213857580|ref|ZP_03384551.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 99

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++  
Sbjct: 30  DMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQI 89

Query: 237 IAYAVRNNIV 246
             YA    ++
Sbjct: 90  ACYAAATGLI 99


>gi|332981237|ref|YP_004462678.1| LuxR family two component transcriptional regulator [Mahella
           australiensis 50-1 BON]
 gi|332698915|gb|AEE95856.1| two component transcriptional regulator, LuxR family [Mahella
           australiensis 50-1 BON]
          Length = 217

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   QA+    ++V    D +LT RE E L  +++G ++ EIA  L IS  TV N+++S
Sbjct: 135 VLKEDQASPLYGFNVGIRYDDDLTQREREVLALVAKGLSNGEIAKKLFISEKTVKNHLSS 194

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           I RK     R+ A  YA+++
Sbjct: 195 IFRKLNVSDRTQAAVYAIKH 214


>gi|228985616|ref|ZP_04145769.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774011|gb|EEM22424.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 73

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 9   ELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 68

Query: 245 IV 246
           +V
Sbjct: 69  LV 70


>gi|222106725|ref|YP_002547516.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4]
 gi|221737904|gb|ACM38800.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4]
          Length = 307

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE E + W+S+GK+S EIA ILGIS  +V  Y+ S+ RK     R+ A+  A+
Sbjct: 226 LSAREKETVIWVSKGKSSWEIAKILGISEKSVEFYMESVKRKLEAVNRTQAVVKAI 281


>gi|161502928|ref|YP_001570040.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864275|gb|ABX20898.1| hypothetical protein SARI_00987 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 251

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 188 EMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 247

Query: 243 NNIV 246
             ++
Sbjct: 248 TGLI 251


>gi|329851246|ref|ZP_08266003.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
 gi|328840092|gb|EGF89664.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
          Length = 247

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +   LT  E  CL   S G TS+EI   + ++  TVN+Y+  I RK   + RS AIA 
Sbjct: 180 FNQQIGLTAGETTCLELASRGMTSEEIGAQMDLTTETVNSYMKLITRKLGARNRSQAIAD 239

Query: 240 AVRNNIV 246
           A+R N++
Sbjct: 240 ALRLNLI 246


>gi|121608696|ref|YP_996503.1| response regulator receiver protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121553336|gb|ABM57485.1| two component transcriptional regulator, LuxR family
           [Verminephrobacter eiseniae EF01-2]
          Length = 361

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G  F+LT RE E L W+ +GK + +I  ILG S  TV  ++  +  K   +TR+ A A A
Sbjct: 289 GLAFKLTAREAEVLYWVVQGKINRDIGAILGASPATVKKHLERVFAKLGVETRTAAAAMA 348

Query: 241 V 241
           +
Sbjct: 349 L 349


>gi|38230165|gb|AAR14179.1| AHL receptor-like protein [uncultured bacterium]
          Length = 73

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 29/45 (64%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           CL W SEGKTS EIA ILGI+  TVN ++  + R T +  R  AI
Sbjct: 29  CLFWASEGKTSGEIACILGITERTVNYHLNQVTRXTGSMNRYQAI 73


>gi|269962779|ref|ZP_06177120.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832469|gb|EEZ86587.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 218

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y      +Y +   ++ ELT REV+ L  + +G ++ EIA  L IS +T+ +++ +I
Sbjct: 139 LLTYYKGKESTYSIEPAEEVELTRREVQVLQMLKDGGSNMEIADSLFISEHTIKSHLYNI 198

Query: 225 MRKTATKTRSGAIAYAVRN 243
            RK   K R+ A ++A RN
Sbjct: 199 FRKIEVKNRTQATSWAKRN 217


>gi|240145753|ref|ZP_04744354.1| nitrate/nitrite response regulator protein NarL [Roseburia
           intestinalis L1-82]
 gi|257202169|gb|EEV00454.1| nitrate/nitrite response regulator protein NarL [Roseburia
           intestinalis L1-82]
 gi|291536999|emb|CBL10111.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis M50/1]
          Length = 213

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +S G  + EIA  L IS  TV N++++I +K     R+ A  +A+RNN+
Sbjct: 151 LTRRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRTQAAVFAIRNNL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 204

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L W+++GKT+ EIA ILGI   TV  ++ ++  K   + R+ A A A+
Sbjct: 145 LTPREAEILFWVAQGKTNPEIATILGIGLTTVKKHLEAVFVKLGVENRTSAAALAL 200


>gi|241206852|ref|YP_002977948.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860742|gb|ACS58409.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 251

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R
Sbjct: 187 DTPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQHAVALAFR 246

Query: 243 NNIV 246
           + ++
Sbjct: 247 HGLI 250


>gi|326793450|ref|YP_004311270.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544214|gb|ADZ89434.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 306

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L WI+ GKT+ EIA IL +S  TVN ++  I  K   + R+ A   A+R
Sbjct: 242 ELNLTDRESEVLRWIANGKTNREIAEILEMSPRTVNKHLEQIFPKLGVENRTAAAGVALR 301


>gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 222

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 102/213 (47%), Gaps = 25/213 (11%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           ++++Y+  S ++++     QE     +V    P  +V  +A+ E D +  V +  ++   
Sbjct: 17  SISDYLEMSGYMVISATNGQEAL--ELVEKHQPHLIVTDIAMPEMDGFELVKRVRSQ--- 71

Query: 111 PVFHTLP-----------ENITP-PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL--- 155
           P+F  LP           E I     G DN Y    F++  + + +  L  + ++I    
Sbjct: 72  PIFRLLPVIFLTAHTSTEERIRGYQLGCDN-YLPKPFELEELGVVIRSLLERSQLIEAEW 130

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           R R+ E   L+ + ++  K +  H     +  LT RE + L  ++EG ++ +I   L +S
Sbjct: 131 RSRINEP--LSNHTSSSHKRHHFHSFSTTNIHLTEREQQVLNLLTEGLSNIKIGDSLHLS 188

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  Y++S++RKT +  R+  + +A+ N+++
Sbjct: 189 SRTVEKYVSSLLRKTDSSNRAELVRFALENDLI 221


>gi|119717534|ref|YP_924499.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119538195|gb|ABL82812.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 512

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I+ G  ++E+A  LG+SR T   +I  I  KT   +RS A  +A+RN +
Sbjct: 447 LTQREVEVLVLIARGVATNEVAARLGVSRKTAATHIERIYAKTGACSRSTATLFALRNGL 506

Query: 246 V 246
           +
Sbjct: 507 L 507


>gi|114799307|ref|YP_759854.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739481|gb|ABI77606.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC
           15444]
          Length = 254

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            L+AY+  +  S D       E T RE++CL W + GKT  EIA I+G+S  T+  ++ +
Sbjct: 169 FLSAYKDAVLPSADPEM---VEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTN 225

Query: 224 IMRKTATKTRSGAIAYA 240
             RK     RS  I  A
Sbjct: 226 ASRKLGVSGRSQTIRLA 242


>gi|15964581|ref|NP_384934.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309327|ref|ZP_07588990.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307320063|ref|ZP_07599484.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15073759|emb|CAC45400.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306894278|gb|EFN25043.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306900196|gb|EFN30814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 246

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W + GKT+ E+A I+ +S  TVN+Y+    RK  +  R   +A A+R  +
Sbjct: 185 LSRREIECLRWAAAGKTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGL 244

Query: 246 V 246
           +
Sbjct: 245 I 245


>gi|134291173|ref|YP_001114942.1| response regulator receiver protein [Burkholderia vietnamiensis G4]
 gi|134134362|gb|ABO58687.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 260

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  +  +L+ R+ +CL+W+++GKTS +I +IL ISR+TV  +I   MR     +R  A  
Sbjct: 192 HPNEFIQLSPRQRQCLSWVAQGKTSSDICMILKISRHTVEYHITEAMRVLNVNSRIAAAV 251

Query: 239 YA 240
            A
Sbjct: 252 IA 253


>gi|332096683|gb|EGJ01674.1| regulatory protein sdiA [Shigella boydii 3594-74]
          Length = 147

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 84  EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 143

Query: 243 NNIV 246
             ++
Sbjct: 144 TGLI 147


>gi|83716740|ref|YP_439002.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167577397|ref|ZP_02370271.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167615548|ref|ZP_02384183.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142109|ref|ZP_05590371.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650565|gb|ABC34629.1| transcriptional regulator, LuxR family [Burkholderia thailandensis
           E264]
          Length = 230

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE  CLTW++ GK+S  IA +L IS+ TV+ +I + M K  T++R+ A   A R  
Sbjct: 167 HLTDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQG 226

Query: 245 IV 246
           ++
Sbjct: 227 LI 228


>gi|311032412|ref|ZP_07710502.1| two-component response regulator-like protein [Bacillus sp. m3-13]
          Length = 210

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F S ++H     ELT RE+E L  I++GK++ EIA  L I+  TV  ++++I+ K     
Sbjct: 141 FGSTNLHE----ELTKRELEVLAEIAKGKSNKEIASSLFITEKTVKTHVSNILAKLEVAD 196

Query: 233 RSGAIAYAVRNNI 245
           R+ A  YAV++ I
Sbjct: 197 RTQAALYAVKHGI 209


>gi|297153818|gb|ADI03530.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 219

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+  Y A +  + D    +D  LT RE+E L  I++G ++ EIA  L IS  TV  +++ 
Sbjct: 138 LVGTYVARIRPAEDTS--RDIPLTPRELEVLRLIADGFSNSEIAAALQISPETVKTFVSR 195

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R  A+ YA R  +V
Sbjct: 196 ILTKLDLRDRVQAVVYAYRQGLV 218


>gi|239908483|ref|YP_002955225.1| LuxR family transcriptional regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798350|dbj|BAH77339.1| LuxR family transcriptional regulator [Desulfovibrio magneticus
           RS-1]
          Length = 257

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE E L+W+  GK+S +I+ IL IS  TVN +I +I++K   + R  A+A A    I
Sbjct: 194 LSGREREVLSWLKHGKSSWDISTILQISECTVNYHIYNIIKKLDVQNRPQAVAVATHLGI 253

Query: 246 V 246
           +
Sbjct: 254 L 254


>gi|82701372|ref|YP_410938.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82409437|gb|ABB73546.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 267

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           YD+H      L+ REVE +TW+ +GKT+ EI  IL IS  TV N++  I RK     R  
Sbjct: 201 YDLHG-----LSEREVEIMTWVRKGKTNAEIGSILRISSYTVKNHLHQIFRKLDVYNRVQ 255

Query: 236 AIA 238
           AI+
Sbjct: 256 AIS 258


>gi|222350143|emb|CAX32456.1| LuxR-type regulator [Rhizobium leguminosarum]
          Length = 251

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R
Sbjct: 187 DTPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFR 246

Query: 243 NNIV 246
           + ++
Sbjct: 247 HGLI 250


>gi|302878668|ref|YP_003847232.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302581457|gb|ADL55468.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 243

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE+ECL W + GK+S EI  IL  +  TVN + ++I RK +T +R  AI  A+
Sbjct: 180 VTHRELECLKWSASGKSSWEIGHILNCTEATVNFHFSNIRRKFSTTSRQQAIVKAI 235


>gi|217978159|ref|YP_002362306.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217503535|gb|ACK50944.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 306

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L W++ GK++ +I+ IL IS  TVN ++  I RK   + R+ A   AV+ 
Sbjct: 244 LTSREAEVLVWLAAGKSNRDISAILSISPRTVNKHLEQIFRKLGVENRAAAAVMAVQT 301


>gi|329114860|ref|ZP_08243616.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001]
 gi|326695757|gb|EGE47442.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001]
          Length = 299

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT RE E L WIS+GKT+ +IA IL IS  TVN ++     K   + R+ A A  +
Sbjct: 235 KRLNLTAREAEVLFWISKGKTNRDIAEILSISHRTVNKHLEQAYVKIGVENRASATARVL 294

Query: 242 R 242
           +
Sbjct: 295 Q 295


>gi|319943176|ref|ZP_08017459.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
 gi|319743718|gb|EFV96122.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
          Length = 237

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 38/57 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            LT RE+E L W ++GK+S +IA IL +S+NTV+ +I + ++K     ++ A+  AV
Sbjct: 175 HLTSREIEVLKWTADGKSSQDIADILTLSKNTVDFHIKNTVQKLNVPNKTAAVVQAV 231


>gi|229163761|ref|ZP_04291706.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619728|gb|EEK76609.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 186

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA  L IS  TV  +I  I RK   K+RS A+ YAVRN 
Sbjct: 122 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQ 181

Query: 245 IV 246
           +V
Sbjct: 182 LV 183


>gi|315182540|gb|ADT89453.1| Transcriptional activator protein vanR [Vibrio furnissii NCTC
           11218]
          Length = 240

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ELT RE +CLTW +EGK++ EIA I+  S  TV  +IA+  +K     R  AI  A+
Sbjct: 175 ELTARENQCLTWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAI 231


>gi|283785661|ref|YP_003365526.1| regulatory protein [Citrobacter rodentium ICC168]
 gi|282949115|emb|CBG88722.1| regulatory protein [Citrobacter rodentium ICC168]
          Length = 240

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA
Sbjct: 175 APEMRFSKREKEILKWTAEGKTSYEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYA 234

Query: 241 VRNNIV 246
               ++
Sbjct: 235 AATGLI 240


>gi|311067149|ref|YP_003972072.1| DNA-binding response regulator, luxR family protein [Bacillus
           atrophaeus 1942]
 gi|310867666|gb|ADP31141.1| DNA-binding response regulator, luxR family protein [Bacillus
           atrophaeus 1942]
          Length = 200

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+E LT I+E KT+ EI+  L IS+ TV  YI+SI++K    +R GA+   ++  +
Sbjct: 138 LTHKELEVLTLIAEDKTNMEISTELMISKRTVERYISSIIQKMKANSRVGAVVNGIKQGL 197

Query: 246 V 246
           +
Sbjct: 198 L 198


>gi|94314242|ref|YP_587451.1| transcriptional regulator two component heavy metal regulatory
           response ZniR [Cupriavidus metallidurans CH34]
 gi|93358094|gb|ABF12182.1| transcriptional regulator two component heavy metal regulatory
           response ZniR [Cupriavidus metallidurans CH34]
          Length = 206

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  L+ RE+E L+W + GKTS EIA ILG+S+ TV+ +I     K    TR  A+  A 
Sbjct: 140 QNVTLSEREIEALSWSARGKTSGEIATILGLSKRTVDFHIDRAREKLGVATRVEAVVRAA 199

Query: 242 RNNIV 246
               +
Sbjct: 200 TEGFI 204


>gi|260770016|ref|ZP_05878949.1| transcriptional activator protein vanR [Vibrio furnissii CIP
           102972]
 gi|260615354|gb|EEX40540.1| transcriptional activator protein vanR [Vibrio furnissii CIP
           102972]
          Length = 240

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ELT RE +CLTW +EGK++ EIA I+  S  TV  +IA+  +K     R  AI  A+
Sbjct: 175 ELTARENQCLTWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAI 231


>gi|95108205|emb|CAD17929.2| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Ralstonia
           solanacearum GMI1000]
          Length = 238

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           DV    D  LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K     ++ A
Sbjct: 168 DVAGYSDDNLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAA 227

Query: 237 IAYAV 241
           +  A 
Sbjct: 228 VVRAA 232


>gi|134287657|ref|YP_001109823.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134132307|gb|ABO60042.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 312

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR
Sbjct: 249 FGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298


>gi|163848961|ref|YP_001637005.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526915|ref|YP_002571386.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163670250|gb|ABY36616.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450794|gb|ACM55060.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 209

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG T+ EIA  L +S  TV  ++ASI+RK     R+ A  YA+R+ +
Sbjct: 148 LTEREREVLKLVAEGLTNAEIASRLTVSEETVKTHVASILRKLGLAHRTQAAIYALRHGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|110680752|ref|YP_683759.1| two-component response regulator, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456868|gb|ABG33073.1| two-component response regulator, putative [Roseobacter
           denitrificans OCh 114]
          Length = 304

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 17/136 (12%)

Query: 108 LFCPVFHT-LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           L  PVF + L   I  P     R+    F +  +  G     P G ++L+          
Sbjct: 180 LGGPVFKSWLDSCIQLPTSQTRRFSCEDFTLDFLGGG-----PSGELLLQ---------I 225

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A  +NM  S   +    F+LT RE E L W+S GKT+ +IA IL +S  T+N ++  + +
Sbjct: 226 ARTSNMRPS--TYLETAFDLTPREAEVLYWLSMGKTNRDIAQILSLSSRTINKHLEQVFQ 283

Query: 227 KTATKTRSGAIAYAVR 242
           K     R+ A   A R
Sbjct: 284 KMGVDNRTAAAVAADR 299


>gi|148273853|ref|YP_001223414.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831783|emb|CAN02752.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 222

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK   +T RE E L  I++GK++ E+A +  +S NTV +YI SI RK   ++R+ A+ + 
Sbjct: 144 GKREGITDRESEILALITQGKSNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWG 203

Query: 241 V 241
           V
Sbjct: 204 V 204


>gi|150395665|ref|YP_001326132.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150027180|gb|ABR59297.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 246

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W + GKT+ E+A I+ +S  TVN+Y+    RK  +  R   +A A+R  +
Sbjct: 185 LSRREIECLRWAAAGKTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGL 244

Query: 246 V 246
           +
Sbjct: 245 I 245


>gi|107026084|ref|YP_623595.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|116692732|ref|YP_838265.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|105895458|gb|ABF78622.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia AU 1054]
 gi|116650732|gb|ABK11372.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
          Length = 312

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR
Sbjct: 249 FGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298


>gi|17548999|ref|NP_522339.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 248

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           DV    D  LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K     ++ A
Sbjct: 178 DVAGYSDDNLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAA 237

Query: 237 IAYAV 241
           +  A 
Sbjct: 238 VVRAA 242


>gi|229087315|ref|ZP_04219457.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228696017|gb|EEL48860.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 186

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA  L IS  TV  +I  I RK   K+RS A+ YAVRN 
Sbjct: 122 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQ 181

Query: 245 IV 246
           +V
Sbjct: 182 LV 183


>gi|221369733|ref|YP_002520829.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
 gi|221162785|gb|ACM03756.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
          Length = 212

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 38/54 (70%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L+ R++E L WI+ GK++ EIA+ILG+SR  V  +++ I++K    +R+ A+ 
Sbjct: 154 QLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAVG 207


>gi|297159285|gb|ADI08997.1| two component LuxR family transcriptional regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 228

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E LT ++ GK++ EIA  L I + TV  Y++ I+ K    +R+ A  YAV++ 
Sbjct: 146 QLTEREAEVLTMLARGKSNKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSG 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|166362770|ref|YP_001655043.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|159027464|emb|CAO89429.1| ycf29 [Microcystis aeruginosa PCC 7806]
 gi|166085143|dbj|BAF99850.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 218

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DF+LT RE E L  ++ G ++ EI   L +S  T+  Y++S++RKT T  R+  + +++ 
Sbjct: 154 DFKLTNREREVLEHLARGLSNSEIGQKLHLSSRTIEKYVSSLLRKTTTNNRAELVRFSLE 213

Query: 243 NNIV 246
           + ++
Sbjct: 214 HRLI 217


>gi|167753032|ref|ZP_02425159.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216]
 gi|167659346|gb|EDS03476.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216]
          Length = 216

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L +  + M  +   + G D  L+ RE+E L  +  G ++ EIA  L IS+ TV+ + A+
Sbjct: 131 VLRSLASRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIADELFISKRTVDKHRAN 190

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ KT  K  +  + YAVR+ +V
Sbjct: 191 ILEKTGCKNTASLVVYAVRHGLV 213


>gi|325124101|gb|ADY83624.1| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 238

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   AV
Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAV 233


>gi|229020635|ref|ZP_04177369.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
 gi|229026848|ref|ZP_04183176.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228734456|gb|EEL85122.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228740659|gb|EEL90923.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
          Length = 215

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIAAVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|171320496|ref|ZP_02909525.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171094259|gb|EDT39337.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 234

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 181 GKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           G +F+  LT RE + L W ++GKT+ EI++IL IS +TVN ++ +I+ K  T  +  A+A
Sbjct: 167 GDEFDPTLTQRETDVLKWTADGKTAYEISLILSISESTVNFHVKNIVAKLGTANKVHAVA 226

Query: 239 YAV 241
            A 
Sbjct: 227 KAA 229


>gi|170738018|ref|YP_001779278.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169820206|gb|ACA94788.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 312

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR
Sbjct: 249 FGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298


>gi|321314657|ref|YP_004206944.1| two-component response regulator YhcY [Bacillus subtilis BSn5]
 gi|320020931|gb|ADV95917.1| two-component response regulator (YhcY) [Bacillus subtilis BSn5]
          Length = 215

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 44/75 (58%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +M   +D    K ++LT RE + LT I+ GK++ EIA  L IS  TV  ++++++ K   
Sbjct: 135 HMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEV 194

Query: 231 KTRSGAIAYAVRNNI 245
             R+ A  +AV+ N+
Sbjct: 195 ADRTQAALFAVKYNL 209


>gi|307130193|ref|YP_003882209.1| transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937]
 gi|306527722|gb|ADM97652.1| Transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937]
          Length = 326

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 159 LWEIGLLA-AYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           L  IGLLA  +Q ++F  +D  W   +   L+ RE ECL W +EG T+ EIA  L  S  
Sbjct: 236 LARIGLLAHTFQEHVFPLFDEAWYHCRHVHLSPREQECLAWSAEGLTAKEIARKLHRSLA 295

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAV 241
           TVN ++ +  RK     R  A+  A+
Sbjct: 296 TVNLHLNNAARKLGASNRVQAVVRAM 321


>gi|297584895|ref|YP_003700675.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297143352|gb|ADI00110.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 219

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE E L +I+ G T  EI+  L IS  TV+ Y   +M K  +K +S  + YA+++N
Sbjct: 154 ELSQREQEVLKYIALGYTQKEISTELFISIKTVDTYKKRVMEKIGSKKKSALVRYALKHN 213

Query: 245 IV 246
           I+
Sbjct: 214 II 215


>gi|187922148|ref|YP_001893790.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713342|gb|ACD14566.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 206

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  ++ CLTW++ GKTS EIA ILG S  TV+ +I   M+     +R+ A  YA    I
Sbjct: 144 LTPCQIVCLTWVARGKTSAEIAKILGRSHYTVDYHIGKAMQALNMCSRTAAAVYASVQGI 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|83956361|ref|ZP_00964786.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter
           sp. NAS-14.1]
 gi|83839409|gb|EAP78592.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter
           sp. NAS-14.1]
          Length = 269

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L W + GKT+ E  +ILG++  TV+ Y+ +   K    T++ A+A+AV+  
Sbjct: 206 QLTKREAQVLRWAARGKTAWETGIILGLTEKTVSFYLGNACAKLKVATKTQAVAFAVKER 265

Query: 245 IV 246
           ++
Sbjct: 266 LI 267


>gi|229089048|ref|ZP_04220402.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-44]
 gi|228694270|gb|EEL47892.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-44]
          Length = 215

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLQLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|212640627|ref|YP_002317147.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212562107|gb|ACJ35162.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 206

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 47/81 (58%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            AY+   F   DV   ++  LT  E+  L  I++ KT++ I+  L ISR TV +++++I+
Sbjct: 124 GAYEGFAFFPNDVDEEENISLTKMELVILKLIAQDKTNENISHSLNISRRTVEHHVSTII 183

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K    +R GA+  A++  I+
Sbjct: 184 KKLRVDSRVGAVVKAIKEGII 204


>gi|188585286|ref|YP_001916831.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349973|gb|ACB84243.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 215

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+++L+ RE E L  I+ G T+ EIA  L IS  TV  +IA I  K     RS  + YA+
Sbjct: 148 KNYDLSDREKEVLQLIALGYTNKEIAEKLYISIKTVETHIARIKEKLGLNRRSELVRYAM 207

Query: 242 RNNIV 246
           RNNI+
Sbjct: 208 RNNII 212


>gi|293611186|ref|ZP_06693484.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826437|gb|EFF84804.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 238

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   AV
Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAV 233


>gi|70732607|ref|YP_262370.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens
           Pf-5]
 gi|68346906|gb|AAY94512.1| autoinducer-binding transcriptional regulator, LuxR family
           [Pseudomonas fluorescens Pf-5]
          Length = 252

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W +EG TS EIA  L  S+ T+N ++ S M K   + R  A+  AV   
Sbjct: 189 DLTRRERECLKWAAEGMTSGEIAERLQRSQATINLHLTSAMHKLGARNRVQAVVRAVHYR 248

Query: 245 IV 246
           ++
Sbjct: 249 LL 250


>gi|153831751|ref|ZP_01984418.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
 gi|148872261|gb|EDL71078.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
          Length = 214

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 171 NMFKSYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           N +K  +VH       + ELT REV+ L  + EG ++ EIA  L IS +T+ +++ +I R
Sbjct: 137 NYYKGKEVHHVVEPAIEVELTRREVQVLQMLKEGGSNMEIADSLFISEHTIKSHLYNIFR 196

Query: 227 KTATKTRSGAIAYAVRN 243
           K   K R+ A ++A RN
Sbjct: 197 KIEVKNRTQATSWAKRN 213


>gi|120612451|ref|YP_972129.1| LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120590915|gb|ABM34355.1| transcriptional regulator, LuxR family [Acidovorax citrulli
           AAC00-1]
 gi|227167429|gb|ACP19743.1| LuxR-like protein [Acidovorax citrulli]
          Length = 242

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECLTW++ GK+S EI  I+ IS +TVN ++ + M K  T +R  A   A    
Sbjct: 178 KLTSREAECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLG 237

Query: 245 IV 246
           ++
Sbjct: 238 LI 239


>gi|126458323|ref|YP_001075604.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134283391|ref|ZP_01770091.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|167723653|ref|ZP_02406889.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei DM98]
 gi|167819785|ref|ZP_02451465.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167849631|ref|ZP_02475139.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167898230|ref|ZP_02485632.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167906588|ref|ZP_02493793.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|237510070|ref|ZP_04522785.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242312988|ref|ZP_04812005.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254190270|ref|ZP_04896779.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254193498|ref|ZP_04899932.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|254262913|ref|ZP_04953778.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254300529|ref|ZP_04967975.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|126232091|gb|ABN95504.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|134245140|gb|EBA45234.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|156105358|gb|ABU49178.1| BpsR2 [Burkholderia pseudomallei]
 gi|157810414|gb|EDO87584.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|157937947|gb|EDO93617.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169650251|gb|EDS82944.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|235002275|gb|EEP51699.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242136227|gb|EES22630.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254213915|gb|EET03300.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
          Length = 236

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A 
Sbjct: 173 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 231


>gi|217419193|ref|ZP_03450700.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226200253|ref|ZP_03795798.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|217398497|gb|EEC38512.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225927761|gb|EEH23803.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 236

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A 
Sbjct: 173 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 231


>gi|254248175|ref|ZP_04941495.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124874676|gb|EAY64666.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 347

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR
Sbjct: 284 FGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 333


>gi|167577870|ref|ZP_02370744.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
          Length = 236

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A 
Sbjct: 173 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 231


>gi|170782950|ref|YP_001711284.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157520|emb|CAQ02714.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 234

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK   +T RE E L  I++GK++ E+A +  +S NTV +YI SI RK   ++R+ A+ + 
Sbjct: 156 GKREGITDRESEILALITQGKSNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWG 215

Query: 241 V 241
           V
Sbjct: 216 V 216


>gi|16077998|ref|NP_388814.1| two-component response regulator YhcY [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308771|ref|ZP_03590618.1| hypothetical protein Bsubs1_05153 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313094|ref|ZP_03594899.1| hypothetical protein BsubsN3_05089 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318020|ref|ZP_03599314.1| hypothetical protein BsubsJ_05033 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322294|ref|ZP_03603588.1| hypothetical protein BsubsS_05134 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81814998|sp|O07528|YHCZ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yhcZ
 gi|2226141|emb|CAA74433.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633256|emb|CAB12761.1| two-component response regulator [YhcY] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 214

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 44/75 (58%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +M   +D    K ++LT RE + LT I+ GK++ EIA  L IS  TV  ++++++ K   
Sbjct: 134 HMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEV 193

Query: 231 KTRSGAIAYAVRNNI 245
             R+ A  +AV+ N+
Sbjct: 194 ADRTQAALFAVKYNL 208


>gi|126464154|ref|YP_001045267.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105965|gb|ABN78495.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 238

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 38/54 (70%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L+ R++E L WI+ GK++ EIA+ILG+SR  V  +++ I++K    +R+ A+ 
Sbjct: 180 KLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAVG 233


>gi|83716885|ref|YP_439427.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|257142551|ref|ZP_05590813.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650710|gb|ABC34774.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 234

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A 
Sbjct: 171 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 229


>gi|77465673|ref|YP_355176.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77390091|gb|ABA81275.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
          Length = 238

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 38/54 (70%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L+ R++E L WI+ GK++ EIA+ILG+SR  V  +++ I++K    +R+ A+ 
Sbjct: 180 KLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAVG 233


>gi|15889561|ref|NP_355242.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157444|gb|AAK88027.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 238

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE++ + W ++GKTS EIA +L IS +TVN Y+ + MRK     R+  +A  +R
Sbjct: 177 LTKRELDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIR 233


>gi|53722204|ref|YP_111189.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|76817623|ref|YP_335301.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei 1710b]
 gi|126444655|ref|YP_001062648.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|52212618|emb|CAH38644.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|76582096|gb|ABA51570.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei 1710b]
 gi|126224146|gb|ABN87651.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
          Length = 234

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A 
Sbjct: 171 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 229


>gi|227821018|ref|YP_002824988.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227340017|gb|ACP24235.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 246

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W + GKT+ E+A I+ +S  TVN+Y+    RK  +  R   +A A+R  +
Sbjct: 185 LSRREIECLRWAAAGKTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAMRAGL 244

Query: 246 V 246
           +
Sbjct: 245 I 245


>gi|291483400|dbj|BAI84475.1| hypothetical protein BSNT_01607 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 215

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 44/75 (58%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +M   +D    K ++LT RE + LT I+ GK++ EIA  L IS  TV  ++++++ K   
Sbjct: 135 HMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEV 194

Query: 231 KTRSGAIAYAVRNNI 245
             R+ A  +AV+ N+
Sbjct: 195 ADRTQAALFAVKYNL 209


>gi|167566223|ref|ZP_02359139.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           oklahomensis EO147]
 gi|167573334|ref|ZP_02366208.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           oklahomensis C6786]
          Length = 230

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE  CLTW++ GK+S  IA +L IS+ TV+ +I + M K  T++R+ A   A R  
Sbjct: 167 HLTDREQICLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQG 226

Query: 245 IV 246
           ++
Sbjct: 227 LI 228


>gi|27382417|ref|NP_773946.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355588|dbj|BAC52571.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 211

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 10/175 (5%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           + +  IV  D+   L+  + +S + K  ++    TE+     H   E ++       R  
Sbjct: 45  ETMSDIVIVDYSMPLMNGLEVSRRLKALDL---RTEVLILTMHEDEELLSEAVLAGVRGF 101

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               D  +  I  +     GR      L E  LL  YQ N       H   D  LT RE 
Sbjct: 102 LFKSDAKKHLISAIEALLDGRPYFTSALVE-KLLHDYQLNK------HGRSDMLLTSREQ 154

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  I+EG T+  ++VIL +S  TV  + AS MRK    + +  + YA+R  +V
Sbjct: 155 SVVQLIAEGHTNRSMSVILKLSVKTVETHRASAMRKLGMSSTAELVRYAIRKKLV 209


>gi|299069138|emb|CBJ40391.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (LuxR family) [Ralstonia
           solanacearum CMR15]
          Length = 238

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D  LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K     ++ A+  A 
Sbjct: 174 DDSLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAA 232


>gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 222

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F+LT REV+ L W++ GKT+ +IA IL +S  TVN ++  I  K   +TR+ A + A+
Sbjct: 159 FQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216


>gi|297538453|ref|YP_003674222.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257800|gb|ADI29645.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Methylotenera sp. 301]
          Length = 258

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE+E + WI  GKT+ EIA IL IS+NTV +++  + +K     R+ A+A
Sbjct: 199 LSVRELEIIHWIKSGKTNQEIATILDISQNTVKSHLKRVFQKMNVTRRAQAVA 251


>gi|229015963|ref|ZP_04172924.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229022180|ref|ZP_04178730.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228739111|gb|EEL89557.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228745323|gb|EEL95364.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 213

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|220921013|ref|YP_002496314.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945619|gb|ACL56011.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 245

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+EC+ W + GKT  EI+ IL +S+ TV  Y+ +  RK     R   IA A+R+ ++
Sbjct: 185 SAREIECMRWAAAGKTGWEISEILSLSQRTVEAYLNNAARKLGVANRVHLIAEAIRHGLI 244


>gi|170751882|ref|YP_001758142.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170658404|gb|ACB27459.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 305

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A   A R+
Sbjct: 243 LPVTGREAEVLLWLSRGKSSRDIGEILGLSHRTVTKHLEGIYAKLGVENRTAASIIAARH 302


>gi|120403052|ref|YP_952881.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1]
 gi|119955870|gb|ABM12875.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1]
          Length = 521

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           RL E+ + A  QA   ++   H  +   LT RE+E L  ++ G ++ EIA  LGIS  T 
Sbjct: 431 RLDEVAVEAVLQAAGHRARG-HSPRPGGLTPREIEVLCLVARGASNKEIAATLGISGKTA 489

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            N++     K     R GA  +A+ + +V
Sbjct: 490 RNHVERTYAKIGATNRIGASMFALNHGLV 518


>gi|229187725|ref|ZP_04314860.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228595717|gb|EEK53402.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 213

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|328542032|ref|YP_004302141.1| two component transcriptional regulator, LuxR family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326411782|gb|ADZ68845.1| two component transcriptional regulator, LuxR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 305

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F LT RE E L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A 
Sbjct: 240 RHFGLTAREAEVLLWIAKGKANRDIGDILGLSPRTVNKHLEQIYAKLGVENRASAAVRAA 299

Query: 242 R 242
           +
Sbjct: 300 Q 300


>gi|307328232|ref|ZP_07607410.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886066|gb|EFN17074.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 219

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT RE+E L  I+ G ++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA 
Sbjct: 154 RDIPLTPRELEVLRLIANGLSNSEIAATLVISQETVKTFVSRILAKLGLRDRVQAVVYAY 213

Query: 242 RNNIV 246
           R  +V
Sbjct: 214 RQGLV 218


>gi|284045352|ref|YP_003395692.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949573|gb|ADB52317.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 592

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 12/100 (12%)

Query: 159 LWE---IGLLAAYQANMFKSYDVHWGKD---------FELTGREVECLTWISEGKTSDEI 206
           LWE   +GLL  +   +       WG++         F LT RE+  LT ++ G ++ EI
Sbjct: 58  LWESPRLGLLQVWIEPVRVPSGDEWGRELTAAPARNEFGLTRRELHVLTLLAGGSSNGEI 117

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  LG +  T+  ++A ++ K    +RSGA A AV   ++
Sbjct: 118 AAQLGTAPRTIGAHVARLLEKLDQSSRSGAAAVAVERGLL 157


>gi|148553102|ref|YP_001260684.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498292|gb|ABQ66546.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1]
          Length = 254

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+++CL  I+ GKT  E+  ILG+S +T++ Y+ +  R+   KTRS  +  A R+  
Sbjct: 188 LTPRQIDCLRLIAAGKTEWEMGKILGLSPSTIHEYVEAARRRYGVKTRSQLVLAAARDGY 247

Query: 246 V 246
           V
Sbjct: 248 V 248


>gi|119946605|ref|YP_944285.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
 gi|119865209|gb|ABM04686.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
          Length = 295

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +T RE E L W+S GKTS EI++IL +S  TVN ++  I +K     R+ A A ++R
Sbjct: 233 LPITKRESEVLYWVSYGKTSWEISLILEMSPRTVNKHLEQIYKKLGVDNRTSAAAISIR 291


>gi|309779188|ref|ZP_07673951.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
 gi|308921992|gb|EFP67626.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
          Length = 201

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           L++  Q  + +    H      +L+ RE E L W + GKTS EIA ILG+S+ TV+ ++ 
Sbjct: 116 LISIVQTRLARRPRTHTAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +   K    TR  A+  A  + I+
Sbjct: 176 NAREKLGVATRIEAVVRASSSGII 199


>gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
          Length = 222

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F+LT REV+ L W++ GKT+ +IA IL +S  TVN ++  I  K   +TR+ A + A+
Sbjct: 159 FQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216


>gi|167839810|ref|ZP_02466494.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 236

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A 
Sbjct: 173 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 231


>gi|167615994|ref|ZP_02384629.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
          Length = 194

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A 
Sbjct: 131 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 189


>gi|88797814|ref|ZP_01113402.1| LuxR, transcriptional regulator [Reinekea sp. MED297]
 gi|88779491|gb|EAR10678.1| LuxR, transcriptional regulator [Reinekea sp. MED297]
          Length = 240

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+ECLTW +EGK+S EI+ ILG S  T   ++++   K     R  AI+ A+   
Sbjct: 175 KLTKREIECLTWATEGKSSWEISQILGCSERTAIFHLSNAANKLGATNRYQAISKALLCG 234

Query: 245 IV 246
           I+
Sbjct: 235 II 236


>gi|134293938|ref|YP_001117674.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137095|gb|ABO58209.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 239

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K A   +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLAATNKVQAVVKAIAAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|159897476|ref|YP_001543723.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890515|gb|ABX03595.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 799

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E LT I++GK++ EIA+ L +S  TVNN++ +I RK    TRS A AY  R
Sbjct: 732 LTKREHELLTLIAQGKSNSEIALELVLSPFTVNNHLRAIYRKLGVSTRSAA-AYIAR 787


>gi|205372705|ref|ZP_03225516.1| two-component response regulator [Bacillus coahuilensis m4-4]
          Length = 212

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  ++EGKT+ EI   L I+  TV  ++++I+ K   + R+ A+ YA +++
Sbjct: 146 ELTNREMEILLLMAEGKTNSEIGEDLFIAHKTVKTHVSNILSKLGVQDRTQAVIYAFQHS 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|331696989|ref|YP_004333228.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951678|gb|AEA25375.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 237

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL A      +   V   +   LT RE E LT ++EG ++ EIA  L +S  TV +++  
Sbjct: 142 LLEALAGGRPEPVPVAPQRPAGLTAREAEVLTLVAEGLSNAEIARRLVVSEGTVKSHMNH 201

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K   + R+ A+A+A RN +V
Sbjct: 202 LLAKIDARDRAQAVAFAYRNGLV 224


>gi|298248902|ref|ZP_06972706.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546906|gb|EFH80773.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE E L  I+ G+ S EI   LGI+R TV +Y+ SI  K    +R+ A+A A+ 
Sbjct: 155 NVQLTEREQEVLAGIAAGERSKEIGARLGITRRTVESYLNSIYTKLNVDSRAAAVAVAIE 214

Query: 243 NNIV 246
             ++
Sbjct: 215 RGLL 218


>gi|229010064|ref|ZP_04167278.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229136711|ref|ZP_04265367.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228646748|gb|EEL02927.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228751197|gb|EEM01009.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 213

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|110633760|ref|YP_673968.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284744|gb|ABG62803.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 241

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE ECL W + GK S +IA IL +S  TV +Y+ +  +K   +T S A+A A R  I
Sbjct: 179 LAPRERECLLWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRI 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 222

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F+LT REV+ L W++ GKT+ +IA IL +S  TVN ++  I  K   +TR+ A + A+
Sbjct: 159 FQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216


>gi|225862611|ref|YP_002747989.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102]
 gi|225789899|gb|ACO30116.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102]
          Length = 213

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|148654624|ref|YP_001274829.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148566734|gb|ABQ88879.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 208

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           QA   +S D        LT RE E L  ++EG T+ EIA  L +   TV  ++ASI+RK 
Sbjct: 138 QAQTMRSSDA-------LTEREGEVLKLLAEGLTNAEIAARLSVGEETVKTHVASILRKL 190

Query: 229 ATKTRSGAIAYAVRNN 244
               R+ A  YA+R+ 
Sbjct: 191 GLAHRTQAAIYALRHG 206


>gi|229074417|ref|ZP_04207449.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|229095286|ref|ZP_04226278.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229101393|ref|ZP_04232137.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228682098|gb|EEL36231.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228688145|gb|EEL42031.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228708701|gb|EEL60842.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 213

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|229114235|ref|ZP_04243656.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228669255|gb|EEL24676.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 213

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 149 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|118476319|ref|YP_893470.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415544|gb|ABK83963.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 216

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN 
Sbjct: 152 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQ 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|152967753|ref|YP_001363537.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151362270|gb|ABS05273.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 236

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  ++ G  + EIA  LGIS NTV N++ +I+ K    +R  A+ YAVR  I
Sbjct: 173 LSPRELDVLRLLARGMANREIAGSLGISENTVKNHVRNILEKLQLHSRMEAVVYAVREKI 232

Query: 246 V 246
           V
Sbjct: 233 V 233


>gi|330465133|ref|YP_004402876.1| LuxR family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328808104|gb|AEB42276.1| LuxR family transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 386

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELTGREVE L  +  G ++ ++A  LGIS  TV  ++++++RKT   +R+ A  +AVR  
Sbjct: 308 ELTGREVEVLDCLVAGMSNKQVARALGISVRTVTVHVSNLLRKTGAASRTEAALWAVRQR 367

Query: 245 I 245
           +
Sbjct: 368 L 368


>gi|149375695|ref|ZP_01893464.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
 gi|149360097|gb|EDM48552.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
          Length = 301

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F LTGRE + L WI+ GKT+ EI  IL +S  TVN ++  + RK   + R+ A A A++
Sbjct: 238 FSLTGRESDVLLWIANGKTNREIGQILEMSPRTVNKHLEQVFRKLGVENRTSAAAAAIK 296


>gi|238027315|ref|YP_002911546.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237876509|gb|ACR28842.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 234

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + L W ++GKT+ EI+ IL IS +TVN ++ +IM K  T  +  A+A A 
Sbjct: 174 LTSRETDVLKWTADGKTAYEISRILSISESTVNFHVKNIMSKLGTSNKIQAVAKAA 229


>gi|299140322|ref|ZP_07033486.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298597710|gb|EFI53884.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 200

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +H G +  LT RE+E L  I +G  + ++A ILGI+  TVN +I+++++K     R+ A+
Sbjct: 131 MHLGGE-HLTVRELEVLALIRDGHANKQVADILGIAETTVNFHISNLVKKLKANDRTHAM 189

Query: 238 AYAVRNN 244
           A AVR  
Sbjct: 190 AIAVRRG 196


>gi|317129803|ref|YP_004096085.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474751|gb|ADU31354.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 210

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           + M K  + H     +LT RE+E L  ++EGK + EIA  L I+  TV  ++++I+ K  
Sbjct: 135 SQMRKKQEAHLHD--QLTEREMEVLKLMTEGKANQEIADELYIALKTVKVHVSNILNKLE 192

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A+ YA +NN++
Sbjct: 193 VHDRTQAVIYAFKNNLI 209


>gi|323704464|ref|ZP_08116042.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535926|gb|EGB25699.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 210

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EG ++ EIA  L +S  TV N++ +I RK   K R+ A  Y ++NN
Sbjct: 144 DLTDREFEILNLIAEGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIYLLKNN 203


>gi|148241069|ref|YP_001220570.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146411445|gb|ABQ39898.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1]
          Length = 243

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE +CL WIS+GKT  +IA +LG+S   V  ++ +  R  A  T   A+A A R  +
Sbjct: 182 LTQRERQCLAWISDGKTMQDIAELLGVSPRGVKFHLDNARRNLAALTLPHAVALAFRQGL 241

Query: 246 V 246
           +
Sbjct: 242 L 242


>gi|218661626|ref|ZP_03517556.1| autoinducer transcriptional regulator protein [Rhizobium etli
           IE4771]
          Length = 243

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           Y++H   D    L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T 
Sbjct: 169 YELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 228

Query: 234 SGAIAYAVRNNIV 246
           S A + AV+  I+
Sbjct: 229 SAAASRAVQLRII 241


>gi|229169497|ref|ZP_04297202.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613996|gb|EEK71116.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 184

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G ++ EIA  L IS  TV  ++  I RK   K+RS A+ YAVRN 
Sbjct: 120 ELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHVNKIFRKLNVKSRSQAVIYAVRNQ 179

Query: 245 IV 246
           +V
Sbjct: 180 LV 181


>gi|295695702|ref|YP_003588940.1| GAF modulated transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295411304|gb|ADG05796.1| GAF modulated transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 511

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L +I++G  + EI+  L +S  TV+ Y+ +I+R+     RS A+A A+R NI
Sbjct: 450 LTPREQQILQFIADGLDTKEISQHLHLSEYTVSEYVRAILRRLQVPNRSAAVAKAMRQNI 509

Query: 246 V 246
           +
Sbjct: 510 I 510


>gi|171057768|ref|YP_001790117.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775213|gb|ACB33352.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 316

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F LT RE E L W+++GKT+ +I  ILG S  TV  ++  +  K   +TR+ A A A+
Sbjct: 251 FRLTPREAEVLYWLAKGKTNRDIGEILGSSAATVKKHLEHVYEKLGVETRNAAAAVAI 308


>gi|295696562|ref|YP_003589800.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295412164|gb|ADG06656.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 220

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L ++S G ++ EIA  L IS +TV N+I +I+ K     R  A AYA+R  I
Sbjct: 151 LTSRELEVLGYLSTGASNREIAKQLFISEHTVRNHIQNILGKLHLTNRVQAAAYAIRQGI 210


>gi|241205631|ref|YP_002976727.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859521|gb|ACS57188.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 241

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           Y++H   D    L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T 
Sbjct: 167 YELHGENDPVPSLSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 226

Query: 234 SGAIAYAVRNNIV 246
           S A + AV+  I+
Sbjct: 227 SAAASRAVQLRII 239


>gi|116253119|ref|YP_768957.1| AHL-dependent transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115257767|emb|CAK08865.1| putative AHL-dependent transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 241

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           Y++H   D    L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T 
Sbjct: 167 YELHGENDPVPSLSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 226

Query: 234 SGAIAYAVRNNIV 246
           S A + AV+  I+
Sbjct: 227 SAAASRAVQLRII 239


>gi|291003373|ref|ZP_06561346.1| two component transcriptional regulator, LuxR family protein
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 221

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GREVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A+R  
Sbjct: 159 ELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAMRAG 218

Query: 245 IV 246
           ++
Sbjct: 219 VI 220


>gi|145594985|ref|YP_001159282.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145304322|gb|ABP54904.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 220

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  I++G ++ EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R
Sbjct: 155 DIPLTPRELEVLRLIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYR 214

Query: 243 NNIV 246
           + +V
Sbjct: 215 SGLV 218


>gi|86359580|ref|YP_471472.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283682|gb|ABC92745.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 251

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+ +
Sbjct: 190 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHGL 249

Query: 246 V 246
           +
Sbjct: 250 I 250


>gi|298250464|ref|ZP_06974268.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548468|gb|EFH82335.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE E L  I+ G+ S EI   LGI+R TV +Y+ SI  K    +R+ A+A A+ 
Sbjct: 155 NVQLTEREQEVLAGIATGERSKEIGARLGITRRTVESYLNSIYTKLDVDSRAAAVAVAIE 214

Query: 243 NNIV 246
             ++
Sbjct: 215 RGLL 218


>gi|212638021|ref|YP_002314541.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559501|gb|ACJ32556.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 208

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 41/62 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  I++GKT+ EIA  L IS  TV  ++++I+ K   + R+ A+ YA ++ 
Sbjct: 146 QLTSREMEVLLLIAQGKTNQEIAEELFISLKTVKVHVSNILAKLDVQDRTQAVIYAFKHG 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|167828172|ref|ZP_02459643.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
          Length = 210

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A 
Sbjct: 147 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 205


>gi|78183869|ref|YP_376303.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168163|gb|ABB25260.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 92

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D     D  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MSSVDTTDPLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKN 60

Query: 233 RSGAIAYAVRN 243
           R   + +A+ N
Sbjct: 61  RVALLNWAMDN 71


>gi|109896689|ref|YP_659944.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109698970|gb|ABG38890.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica
           T6c]
          Length = 248

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+ECL W  EGKT+ EI+ I+ +S  TV  ++ +   K     R  A+A A++  
Sbjct: 183 ELTKRELECLFWACEGKTAWEISQIINVSERTVLFHLGNSNTKLGAINRQHAVALAIKKG 242

Query: 245 IV 246
           I+
Sbjct: 243 II 244


>gi|332560426|ref|ZP_08414744.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N]
 gi|332274224|gb|EGJ19540.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N]
          Length = 105

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 38/54 (70%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L+ R++E L WI+ GK++ EIA+ILG+SR  V  +++ I++K    +R+ A+ 
Sbjct: 47  KLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAVG 100


>gi|309789968|ref|ZP_07684544.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227988|gb|EFO81640.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 253

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  I+ G ++ EIA  L IS  TV N+I+SI+RK +   R+ A+ +A+R
Sbjct: 173 LSEREIEVLERIAAGGSNKEIADSLSISTQTVKNHISSILRKLSLNDRTQAVLFALR 229


>gi|258652794|ref|YP_003201950.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258556019|gb|ACV78961.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 562

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G T+ ++A  L IS  TV  ++A++ RK    TR+ A+A+A RN +
Sbjct: 495 LTARETEILALVARGDTNRQVAQALVISEKTVARHLANVHRKLGVSTRTAAVAWARRNGL 554


>gi|302522670|ref|ZP_07275012.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78]
 gi|318057801|ref|ZP_07976524.1| response regulator [Streptomyces sp. SA3_actG]
 gi|302431565|gb|EFL03381.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78]
          Length = 290

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++EG T+  +A  LG+   TV  Y+ + MRK   +TR  A+A A R  +
Sbjct: 229 LTPREVEVLVIVAEGATNAAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGV 288

Query: 246 V 246
           V
Sbjct: 289 V 289


>gi|116250894|ref|YP_766732.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255542|emb|CAK06619.1| putative GerE/LuxR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 159

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E + W++ GKT+ EI  ILGIS  TVN +IA+   +      +  +A A+RN I
Sbjct: 98  VTPRETEVIRWMAAGKTAAEIGTILGISHITVNTHIANAKARLGVFKDTALVAAALRNGI 157

Query: 246 V 246
           +
Sbjct: 158 I 158


>gi|121606516|ref|YP_983845.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595485|gb|ABM38924.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 292

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           QAN+ +   V+ GKD +L+ RE + L  ++ G +S EI   L IS  T N +I +I RK 
Sbjct: 216 QANV-EPLPVNQGKDNKLSEREQQVLKLVASGHSSTEIGARLVISWQTANTHIKNIYRKL 274

Query: 229 ATKTRSGAIAYAVRNNI 245
             + R+ A+++A  + +
Sbjct: 275 NVRNRAQAVSFAANHGL 291


>gi|222106283|ref|YP_002547074.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737462|gb|ACM38358.1| two component response regulator [Agrobacterium vitis S4]
          Length = 220

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ R+++ L  ++EG+T+ EIA+ILGIS  TV  ++++I R     TR+GA+   +   +
Sbjct: 146 LSQRQLDVLHLLAEGRTNKEIAIILGISPFTVRIHVSAIFRALGVATRAGAVTKGIAMGL 205

Query: 246 V 246
           V
Sbjct: 206 V 206


>gi|196231497|ref|ZP_03130355.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224350|gb|EDY18862.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 216

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 163 GLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           G +A    +MF  +    G  D+ LT RE + L  + +G+T  EIA  L +S +TV+ ++
Sbjct: 132 GRIARRVLDMFARFAPTRGDGDYGLTTRETQILEAMVKGRTKKEIAAQLDLSFHTVDTHL 191

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I +K    TR+GA+A A++  +V
Sbjct: 192 RNIYQKLEVNTRTGAVAKALKEKLV 216


>gi|86358681|ref|YP_470573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282783|gb|ABC91846.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 241

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 13/153 (8%)

Query: 96  DKYYNVLQRPTELFCPVF-HTLPENIT-PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           D   N    P EL   +  H +P  +  P   +D R     F   R  +G   +     +
Sbjct: 99  DDTVNGQAFPAELRALMLRHAIPAGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIV 158

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           IL         L AY A      + H      L+ RE+E + W ++GKTS EI  IL +S
Sbjct: 159 ILHT-------LDAYNAVRRNEENAHSA----LSARELEVVRWTAQGKTSIEIGQILTLS 207

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TVN Y+ + ++K     R+  +A A+R  ++
Sbjct: 208 DHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240


>gi|333023628|ref|ZP_08451692.1| putative LuxR family transcriptional regulator [Streptomyces sp.
           Tu6071]
 gi|332743480|gb|EGJ73921.1| putative LuxR family transcriptional regulator [Streptomyces sp.
           Tu6071]
          Length = 290

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++EG T+  +A  LG+   TV  Y+ + MRK   +TR  A+A A R  +
Sbjct: 229 LTPREVEVLVIVAEGATNAAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGV 288

Query: 246 V 246
           V
Sbjct: 289 V 289


>gi|331657961|ref|ZP_08358923.1| regulatory protein SdiA [Escherichia coli TA206]
 gi|331056209|gb|EGI28218.1| regulatory protein SdiA [Escherichia coli TA206]
          Length = 87

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA  
Sbjct: 24  EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAA 83

Query: 243 NNIV 246
             ++
Sbjct: 84  TGLI 87


>gi|316935504|ref|YP_004110486.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603218|gb|ADU45753.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 309

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  +F LT RE E L W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R
Sbjct: 240 QFSAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294


>gi|307328222|ref|ZP_07607400.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886056|gb|EFN17064.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 232

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E LT ++ GK + EIA  L I + TV  Y++ I+ K    +R+ A  YAV++ 
Sbjct: 149 QLTERETEVLTMLARGKANKEIAHDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSG 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|303238745|ref|ZP_07325277.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593624|gb|EFL63340.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 216

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+  +  I +GK++ EIA+ + I+  +V N I +I+ K   K R+    +AV+
Sbjct: 153 DINLTDRELSIIKLIVDGKSNKEIALSIFITEGSVKNIITNILEKLNLKDRTQLAVFAVK 212

Query: 243 NNIV 246
           NNIV
Sbjct: 213 NNIV 216


>gi|159185350|ref|NP_355660.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159140603|gb|AAK88445.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 245

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE+E L  +++G TS EI   L IS +TV+ YI  I R+ + K R   +A A R+
Sbjct: 182 LELTRREMEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRH 241

Query: 244 NIV 246
            ++
Sbjct: 242 GLL 244


>gi|47568528|ref|ZP_00239227.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|228988639|ref|ZP_04148725.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47554770|gb|EAL13122.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|228771090|gb|EEM19570.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 215

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|238782956|ref|ZP_04626984.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
 gi|238716159|gb|EEQ08143.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
          Length = 244

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 21/138 (15%)

Query: 112 VFHTLPENITPPAGMDNRYC------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           V H    N+T  + M ++ C       +  D A I++ LML+  K              L
Sbjct: 112 VLHDQYYNLTILSLMTDKDCDEDIEDKIANDKANIQMLLMLIHEK--------------L 157

Query: 166 AAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            ++  ++ +S D    G++   T RE E + W S GK+  EIA+ILGI   TV +++  +
Sbjct: 158 TSFYNDLNRSSDFCKMGRNEIFTKRENEIIYWASVGKSYPEIALILGIKPTTVKHHMGKV 217

Query: 225 MRKTATKTRSGAIAYAVR 242
           +RK        AI+ AV 
Sbjct: 218 VRKLGVTNAKHAISLAVE 235


>gi|222086655|ref|YP_002545189.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724103|gb|ACM27259.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 243

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  +
Sbjct: 182 LSARELEVVRWTAQGKTSVEIGQILSLSDHTVNAYMMNAIKKLDCVNRTQLVAKAIRLKL 241

Query: 246 V 246
           +
Sbjct: 242 I 242


>gi|223936999|ref|ZP_03628907.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894280|gb|EEF60733.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 217

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT R  E L W+++GKT+ +IA ILGIS +TV  ++  I  K   +TRS A   A+
Sbjct: 145 LTPRAAETLLWVAQGKTNLDIATILGISESTVKKHLLEIFDKLNIETRSAATLRAL 200


>gi|167742620|ref|ZP_02415394.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 14]
 gi|167914947|ref|ZP_02502038.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 112]
 gi|167922782|ref|ZP_02509873.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
          Length = 210

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A 
Sbjct: 147 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAA 205


>gi|324329359|gb|ADY24619.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 215

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|311742180|ref|ZP_07715990.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM
           15272]
 gi|311314673|gb|EFQ84580.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM
           15272]
          Length = 899

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W+S G ++ +IA  LGIS  TV+ ++++++RK    +R+ A   A R
Sbjct: 836 DPHLTPRESEVLRWVSTGASNRQIARTLGISEGTVSVHVSNLLRKLGVGSRTEAAVRAAR 895


>gi|289165158|ref|YP_003455296.1| transcriptional regulator [Legionella longbeachae NSW150]
 gi|288858331|emb|CBJ12199.1| putative transcriptional regulator [Legionella longbeachae NSW150]
          Length = 282

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL  RE ECL W   GK++ E + ILG+ R TV NY+  +  K    +   AI  A+++ 
Sbjct: 220 ELKDRERECLFWARYGKSTSETSEILGLKRATVKNYLEGVREKFHVSSVQEAITLALQHQ 279

Query: 245 IV 246
           I+
Sbjct: 280 II 281


>gi|192289851|ref|YP_001990456.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192283600|gb|ACE99980.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 308

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  +F LT RE E L W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R
Sbjct: 240 QFSAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294


>gi|39934323|ref|NP_946599.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39648171|emb|CAE26691.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 308

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  +F LT RE E L W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R
Sbjct: 240 QFSAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294


>gi|11465809|ref|NP_053953.1| ORF29 [Porphyra purpurea]
 gi|1723332|sp|P51343|YCF29_PORPU RecName: Full=Probable transcriptional regulator ycf29
 gi|1276809|gb|AAC08229.1| hypothetical chloroplast ORF 29 [Porphyra purpurea]
          Length = 209

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  + +G T+ EIAVIL  S   V  Y++ +++KT T+ R+  + Y+++NN+
Sbjct: 146 LTPREKSILNLVIDGLTNKEIAVILDTSIRNVEKYVSRLLQKTNTRNRTLLVKYSIKNNL 205

Query: 246 V 246
           +
Sbjct: 206 L 206


>gi|225175953|ref|ZP_03729945.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168541|gb|EEG77343.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 225

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGREVE LT ++ G  + EIA  L +S+ TV  ++ASI  K    +R+ AI +A++  +
Sbjct: 154 LTGREVEVLTMVANGHRNQEIASRLYVSKRTVEAHLASIFSKLKVGSRTEAILFALKEGM 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|295095488|emb|CBK84578.1| transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 173

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + + + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     +     YA  
Sbjct: 110 EMKFSKREREILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKIQIACYAAA 169

Query: 243 NNIV 246
             ++
Sbjct: 170 TGLI 173


>gi|302544315|ref|ZP_07296657.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461933|gb|EFL25026.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 229

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E LT ++ GK + EIA  L I + TV  Y++ I+ K    +R+ A  YAV++ 
Sbjct: 146 QLTERETEVLTMLARGKANKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSG 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|269839470|ref|YP_003324162.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791200|gb|ACZ43340.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 188

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT REVE L  +++G  +  IA  LGIS +TV  ++ SI+ K    +R+ A+A A 
Sbjct: 122 EEVPLTQREVEVLALMADGLPNKAIAARLGISEHTVKFHVGSILAKLGASSRAEAVAIAA 181

Query: 242 RNNIV 246
           R  ++
Sbjct: 182 RKGLL 186


>gi|32141276|ref|NP_733677.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|256784694|ref|ZP_05523125.1| response regulator [Streptomyces lividans TK24]
 gi|289768580|ref|ZP_06527958.1| response regulator [Streptomyces lividans TK24]
 gi|1542943|emb|CAA69209.1| redZ [Streptomyces coelicolor A3(2)]
 gi|24429546|emb|CAD55237.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|289698779|gb|EFD66208.1| response regulator [Streptomyces lividans TK24]
          Length = 217

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  +++GKT+ E+A  L +S  TV +++  I+RK    TR+ A+A A  + 
Sbjct: 145 ELTPRETEVLLLLTQGKTNTEMAATLSVSPTTVRSHVHRILRKLGAATRAQAVAIAYESG 204

Query: 245 IV 246
           ++
Sbjct: 205 LL 206


>gi|134094678|ref|YP_001099753.1| putative two-component response regulator protein [Herminiimonas
           arsenicoxydans]
 gi|133738581|emb|CAL61626.1| Two-component response regulator, LuxR family [Herminiimonas
           arsenicoxydans]
          Length = 315

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L+W+++GKT+ +I  IL +S  TV+ ++  I  K   +TRS A+A A
Sbjct: 244 LTPRETEVLSWLAKGKTNRDIGDILQLSPRTVSKHLEHIFEKLGVETRSAAVAMA 298


>gi|30265432|ref|NP_847809.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530989|ref|YP_022338.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188248|ref|YP_031501.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481286|ref|YP_039401.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145220|ref|YP_086677.1| response regulator [Bacillus cereus E33L]
 gi|65317392|ref|ZP_00390351.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|118480442|ref|YP_897593.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871317|ref|ZP_02215966.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635732|ref|ZP_02394042.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640431|ref|ZP_02398695.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688212|ref|ZP_02879423.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708051|ref|ZP_02898499.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651955|ref|ZP_02934538.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568889|ref|ZP_03021791.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036150|ref|ZP_03103550.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041030|ref|ZP_03108327.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196045422|ref|ZP_03112653.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218906592|ref|YP_002454426.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225867394|ref|YP_002752772.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227818179|ref|YP_002818188.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228918025|ref|ZP_04081555.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228930420|ref|ZP_04093421.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936698|ref|ZP_04099489.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228949137|ref|ZP_04111407.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124916|ref|ZP_04254092.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           95/8201]
 gi|229187641|ref|ZP_04314778.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC
           6E1]
 gi|229603380|ref|YP_002869624.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687146|ref|ZP_05151004.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724071|ref|ZP_05185856.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735533|ref|ZP_05193240.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742202|ref|ZP_05199889.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755887|ref|ZP_05207919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761599|ref|ZP_05213619.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301056878|ref|YP_003795089.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30260110|gb|AAP29295.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47506137|gb|AAT34813.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182175|gb|AAT57551.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49332842|gb|AAT63488.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978689|gb|AAU20239.1| response regulator [Bacillus cereus E33L]
 gi|118419667|gb|ABK88086.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164712984|gb|EDR18512.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511651|gb|EDR87033.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528841|gb|EDR91598.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127024|gb|EDS95903.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667905|gb|EDT18657.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082659|gb|EDT67723.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190559956|gb|EDV13939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991317|gb|EDX55285.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196023629|gb|EDX62305.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028198|gb|EDX66808.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218537324|gb|ACK89722.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225787376|gb|ACO27593.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227004175|gb|ACP13918.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228595795|gb|EEK53478.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC
           6E1]
 gi|228658546|gb|EEL14210.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           95/8201]
 gi|228810578|gb|EEM56929.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228822907|gb|EEM68748.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829267|gb|EEM74903.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228841613|gb|EEM86727.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229267788|gb|ACQ49425.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300379047|gb|ADK07951.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 215

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|302526791|ref|ZP_07279133.1| predicted protein [Streptomyces sp. AA4]
 gi|302435686|gb|EFL07502.1| predicted protein [Streptomyces sp. AA4]
          Length = 71

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE+  L  ++EG ++ EIA  LG S +TV N +  +M +   + R+ A AYAVRN 
Sbjct: 10  QLGERELRVLRLVAEGYSNSEIAAELGWSEHTVKNALYDLMARLGVRNRAHAAAYAVRNG 69

Query: 245 IV 246
           ++
Sbjct: 70  LI 71


>gi|121533453|ref|ZP_01665281.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
 gi|121308012|gb|EAX48926.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
          Length = 225

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++G ++ EIA  L +S  TV N++ +I RK     R+ A+ YA+R+ I
Sbjct: 161 LTYRELEVLQLVAQGLSNSEIAQKLYLSEKTVKNHLTNIFRKINVTDRTQALIYAIRHKI 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|9622950|gb|AAF89989.1|AF210630_2 AHL-dependent transcriptional regulator CinR [Rhizobium
           leguminosarum]
          Length = 241

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           Y++H   D    L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T 
Sbjct: 167 YELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 226

Query: 234 SGAIAYAVRNNIV 246
           S A + AV+  I+
Sbjct: 227 SAAASRAVQLRII 239


>gi|198283772|ref|YP_002220093.1| LuxR family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665417|ref|YP_002426403.1| autoinducer-binding transcriptional regulator, LuxR family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|71044540|gb|AAV53702.2| AfeR [Acidithiobacillus ferrooxidans]
 gi|198248293|gb|ACH83886.1| transcriptional regulator, LuxR family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517630|gb|ACK78216.1| autoinducer-binding transcriptional regulator, LuxR family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 237

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +L+ REVE L W  EGKTS EIA IL I+  TVN +I+  M K     ++ A+  A 
Sbjct: 175 QLSCREVEVLRWTGEGKTSGEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAA 231


>gi|325066389|ref|ZP_08125062.1| two component LuxR family transcriptional regulator [Actinomyces
           oris K20]
          Length = 234

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRD--RLWEIG-------LLAAYQANMFKSYD 177
           ++   SL   + +   G ++L P    I+ D  RLW  G       +     A    S  
Sbjct: 109 EDGASSLAGAIHQAVAGNLVLSPTSSAIISDQARLWASGSSRPSESIPVPTHAQQPPSPL 168

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H      L+ RE E LT + + KT+ +IA  L +S  TV  ++++I+ K   + R GA 
Sbjct: 169 PHG---VTLSEREREVLTLVVDAKTNKQIATRLRVSEATVKTHVSAIIAKLGVQDRVGAA 225

Query: 238 AYAVRNNIV 246
            YA+++N+V
Sbjct: 226 VYALQHNLV 234


>gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
          Length = 222

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 98/210 (46%), Gaps = 19/210 (9%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           ++++Y+  S + ++     QE     +V    P  +V  +A+ E D +     V  +P  
Sbjct: 17  SISDYLEMSGYFVISATNGQEAL--QLVEKHQPHLIVTDIAMPEMDGFELVKRVRSQPGF 74

Query: 108 LFCPVF----HTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL---RDR 158
              PV     HT  E        G DN Y    F++  + + +  L  + ++I    R R
Sbjct: 75  RLLPVIFLTAHTSTEERIRGYQLGCDN-YLPKPFELEELGVVIRSLLERSQLIEAEWRSR 133

Query: 159 LWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + E   L+ + ++  K +  H     +  LT RE + L  ++EG ++ +I   L +S  T
Sbjct: 134 INEP--LSNHTSSSHKRHHFHSLSTTNIHLTEREQQVLNLLTEGLSNIKIGDSLHLSSRT 191

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  Y++S++RKT +  R+  + +A+ N+++
Sbjct: 192 VEKYVSSLLRKTDSSNRAELVRFALENDLI 221


>gi|229158972|ref|ZP_04287029.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           4342]
 gi|228624583|gb|EEK81353.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           4342]
          Length = 215

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|302562273|ref|ZP_07314615.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302479891|gb|EFL42984.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT RE+E L  I++G ++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA 
Sbjct: 155 RDLPLTPRELEVLRLIADGLSNSEIAAALLISQETVKTFVSRILAKLGLRDRVQAVVYAY 214

Query: 242 RNNI 245
           R  +
Sbjct: 215 RRGL 218


>gi|325104166|ref|YP_004273820.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
 gi|324973014|gb|ADY51998.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
          Length = 217

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L  ISEG T+ EIA  L +S+ TV  +  +++ KT  K  +  I YAV+
Sbjct: 154 EIELSDRELEVLGLISEGLTNIEIANKLFLSKRTVEGHRQNLINKTKVKNSAALIKYAVK 213

Query: 243 NNIV 246
           N ++
Sbjct: 214 NGLI 217


>gi|86358518|ref|YP_470410.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
 gi|86282620|gb|ABC91683.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
          Length = 260

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           Y++H   D    L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T 
Sbjct: 186 YELHGENDPVPTLSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 245

Query: 234 SGAIAYAVRNNIV 246
           S A + AV+  I+
Sbjct: 246 SAAASRAVQLRII 258


>gi|71492988|gb|AAZ32754.1| MrtR [Mesorhizobium tianshanense]
          Length = 272

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           Y++H   D    L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T 
Sbjct: 198 YELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 257

Query: 234 SGAIAYAVRNNIV 246
           S A + AV+  I+
Sbjct: 258 SAAASRAVQLRII 270


>gi|228994130|ref|ZP_04154030.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
 gi|228765582|gb|EEM14236.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
          Length = 215

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           QA   +S ++H      LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K 
Sbjct: 141 QAEKQESSNIHVDV---LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILGKL 197

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A  YAV+N +V
Sbjct: 198 NLSDRTQAALYAVKNGVV 215


>gi|218677979|ref|ZP_03525876.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 121

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           Y++H   D    L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T 
Sbjct: 47  YELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 106

Query: 234 SGAIAYAVRNNIV 246
           S A + AV+  I+
Sbjct: 107 SAAASRAVQLRII 119


>gi|149186879|ref|ZP_01865189.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148829546|gb|EDL47987.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 226

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  REVE L WI++GKT+ EIA ILG++  TV  +IA + +K     R+       R  I
Sbjct: 164 LPRREVEILHWIAKGKTNAEIAAILGVAAPTVATHIARMFQKLDVNDRAALAVKGFRYGI 223

Query: 246 V 246
           +
Sbjct: 224 I 224


>gi|91776759|ref|YP_546515.1| LuxR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710746|gb|ABE50674.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus
           KT]
          Length = 272

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L W+  GK++ EIA IL IS  TV N++ +I+RK   + RS A A A R  +
Sbjct: 210 ITPREKEILQWVHTGKSNWEIATILEISPLTVKNHMQNILRKLDVQNRSHAAAKAYRLGL 269

Query: 246 V 246
           +
Sbjct: 270 I 270


>gi|325293769|ref|YP_004279633.1| two-component response regulator protein [Agrobacterium sp. H13-3]
 gi|325061622|gb|ADY65313.1| putative two-component response regulator protein [Agrobacterium
           sp. H13-3]
          Length = 309

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 177 DVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           D H  KD F LT RE E L WI++GK++ +I  ILG+S  TVN ++  I  K   + R+ 
Sbjct: 238 DDHLLKDHFALTTRESEVLLWIAKGKSNRDIGDILGLSARTVNKHLEQIYVKLGVENRAS 297

Query: 236 AIAYAV 241
           A   A 
Sbjct: 298 AAVKAA 303


>gi|229099838|ref|ZP_04230762.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-29]
 gi|228683584|gb|EEL37538.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-29]
          Length = 215

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|229105997|ref|ZP_04236618.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-28]
 gi|228677392|gb|EEL31648.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-28]
          Length = 215

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|188534209|ref|YP_001908006.1| Regulatory protein [Erwinia tasmaniensis Et1/99]
 gi|188029251|emb|CAO97128.1| Regulatory protein [Erwinia tasmaniensis Et1/99]
          Length = 240

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +L+ RE+E L W +EGKTS EI++IL IS+NTVN +   + ++     ++   +YA 
Sbjct: 178 LDLSERELEVLKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAA 235


>gi|158320230|ref|YP_001512737.1| two component LuxR family transcriptional regulator [Alkaliphilus
           oremlandii OhILAs]
 gi|158140429|gb|ABW18741.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           oremlandii OhILAs]
          Length = 224

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E LT ++EG  + EI   L IS  TV N++++I +K     R+ A  YA ++N
Sbjct: 161 ELTRREYEVLTLLAEGINNKEIGDCLFISEKTVKNHVSNIFKKINVNDRTQAAIYAYKHN 220

Query: 245 I 245
           I
Sbjct: 221 I 221


>gi|253575856|ref|ZP_04853190.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844650|gb|EES72664.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 242

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +  T     D    SL   +  +  G   + PK  G++I + R    L E G +
Sbjct: 100 VFETLRKGATGYLLKDMEAESLINAIRTVAEGNAFIHPKVTGKLIQQLRRMEYLSETGAI 159

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A   A          G D  LT RE E L  ++EG+++  I   L IS  TV N+++SI+
Sbjct: 160 AEDTAIREAGVKFVAGDDNPLTRREAEVLRLMAEGRSNKMIGEHLFISEKTVKNHVSSIL 219

Query: 226 RKTATKTRSGAIAYAVR 242
           +K     R+ A+  A++
Sbjct: 220 QKMDVDDRTQAVINAIK 236


>gi|229118901|ref|ZP_04248248.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-3]
 gi|228664557|gb|EEL20052.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-3]
          Length = 215

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|239825761|ref|YP_002948385.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239806054|gb|ACS23119.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. WCH70]
          Length = 199

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT  E+  L  ISE KT+ EI+ +L ISR TV ++++SI+RK    +R GA+  A++
Sbjct: 138 LTKIELNILQLISEDKTNTEISELLNISRRTVEHHVSSILRKLDVDSRVGAVVKAMK 194


>gi|209550247|ref|YP_002282164.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536003|gb|ACI55938.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 241

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 176 YDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           Y++H   D    L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T 
Sbjct: 167 YELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATI 226

Query: 234 SGAIAYAVRNNIV 246
           S A + AV+  I+
Sbjct: 227 SAAASRAVQLRII 239


>gi|209548302|ref|YP_002280219.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534058|gb|ACI53993.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 70

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E + W++ GKT+ EI  IL IS  TVN +IA+   +      +  +A A+RN I
Sbjct: 9   VTPRETEIIGWMAAGKTAAEIGTILAISHITVNTHIANAKARLGVFKDTALVAAALRNGI 68

Query: 246 V 246
           +
Sbjct: 69  I 69


>gi|85706509|ref|ZP_01037602.1| two-component response regulator [Roseovarius sp. 217]
 gi|85668921|gb|EAQ23789.1| two-component response regulator [Roseovarius sp. 217]
          Length = 232

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DF LT RE E +T +  G    +IA  L I+R TV  ++A+ ++KT  K+R  A+ +A+ 
Sbjct: 161 DFGLTRREAEIMTMLGGGAPVSDIADALDITRQTVRVHLANAIKKTGLKSREAAVRFAME 220

Query: 243 N 243
           N
Sbjct: 221 N 221


>gi|300117929|ref|ZP_07055696.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298724793|gb|EFI65468.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 215

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|124266442|ref|YP_001020446.1| response regulator [Methylibium petroleiphilum PM1]
 gi|124259217|gb|ABM94211.1| response regulator [Methylibium petroleiphilum PM1]
          Length = 245

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 11/131 (8%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQANMFKSYD------- 177
           ++R+  L  ++ +I  G   L P    R++   RL + G +A   A+    +        
Sbjct: 115 EDRFEVLVEELQKIVRGQPPLSPAIARRLLSHFRLGDSGSMALDSAHAPGDFQPARPAAP 174

Query: 178 -VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            V+   D E LT RE E LT++S+G T  EIA ++GI   TVN++I +I RK    +R+ 
Sbjct: 175 AVYAEPDHERLTPRETEVLTYLSKGFTIKEIAGLMGIKWFTVNDHIKAIYRKLNVSSRAE 234

Query: 236 AIAYAVRNNIV 246
           A   A +  +V
Sbjct: 235 AAVLASKQGLV 245


>gi|229199533|ref|ZP_04326194.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1293]
 gi|228583938|gb|EEK42095.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1293]
          Length = 215

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|221065714|ref|ZP_03541819.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220710737|gb|EED66105.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 254

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K++E LT RE E L  I++GK + EI   L IS  TV+ ++ +I RK   +TR+ A+ YA
Sbjct: 189 KNYEPLTEREKEVLRLIAQGKRTHEIGSYLKISTLTVSTHVKNIYRKMQVRTRAQAVRYA 248

Query: 241 VRNNIV 246
           V   I+
Sbjct: 249 VLKGII 254


>gi|91786468|ref|YP_547420.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91695693|gb|ABE42522.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 297

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L+W+++GKT+ +I  ILG+S  TVN ++  I  K   +TR
Sbjct: 238 LTPRETEVLSWLAKGKTNKDIGDILGMSHRTVNKHLEHIFEKLGVETR 285


>gi|229094522|ref|ZP_04225591.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-42]
 gi|228688906|gb|EEL42736.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-42]
          Length = 215

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|218232786|ref|YP_002370188.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218160743|gb|ACK60735.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 215

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|159040348|ref|YP_001539601.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157919183|gb|ABW00611.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 219

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+  Y A +  + D     +  LT RE+E L  I++G ++ EIA  L IS+ TV  Y++ 
Sbjct: 138 LVGRYAARIRPAED--SSSEIPLTPRELEVLRLIADGLSNSEIAATLVISQETVKTYVSR 195

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R  A+ YA R+ +V
Sbjct: 196 ILTKLDLRDRVQAVVYAYRSGLV 218


>gi|89100033|ref|ZP_01172903.1| response regulator [Bacillus sp. NRRL B-14911]
 gi|89085267|gb|EAR64398.1| response regulator [Bacillus sp. NRRL B-14911]
          Length = 210

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 41/61 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  ++EGKT+ EIA  L I+  TV  ++++I+ K   + R+ A+ YA +++
Sbjct: 148 ELTSREMEILLLMTEGKTNQEIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAFKHS 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|262281348|ref|ZP_06059129.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257174|gb|EEY75911.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus
           RUH2202]
          Length = 238

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   AV
Sbjct: 178 LTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRAV 233


>gi|206970021|ref|ZP_03230974.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229193664|ref|ZP_04320607.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           10876]
 gi|206734598|gb|EDZ51767.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228589817|gb|EEK47693.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           10876]
          Length = 215

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|327439935|dbj|BAK16300.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 232

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 159 LWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           L E  L ++    M  ++  +    + +L+ RE E +  ++ G +S +IA +L IS  T+
Sbjct: 143 LMEANLFSSQVGEMLFNHPCYVENNEIKLSKREFEVMKCVAFGYSSKQIAHLLEISETTI 202

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             YI S+M KT T  R+ A+A+  +  I+
Sbjct: 203 KQYIKSVMSKTNTSNRTHAVAFLFQKRIL 231


>gi|299771984|ref|YP_003734010.1| Transcriptional activator protein phzR [Acinetobacter sp. DR1]
 gi|284158686|gb|ADB80058.1| AqsR [Acinetobacter sp. DR1]
 gi|298702072|gb|ADI92637.1| Transcriptional activator protein [Acinetobacter sp. DR1]
          Length = 238

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   AV
Sbjct: 178 LTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRAV 233


>gi|228942557|ref|ZP_04105092.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228975490|ref|ZP_04136045.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228982123|ref|ZP_04142415.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis Bt407]
 gi|228777661|gb|EEM25936.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis Bt407]
 gi|228784284|gb|EEM32308.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817150|gb|EEM63240.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326943209|gb|AEA19105.1| two-component response regulator yhcZ [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 215

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|229176087|ref|ZP_04303581.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3]
 gi|228607431|gb|EEK64759.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3]
          Length = 215

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|167581251|ref|ZP_02374125.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167619336|ref|ZP_02387967.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257138549|ref|ZP_05586811.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
          Length = 237

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A 
Sbjct: 176 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 231


>gi|94497651|ref|ZP_01304219.1| putative transcription regulator protein [Sphingomonas sp. SKA58]
 gi|94422868|gb|EAT07901.1| putative transcription regulator protein [Sphingomonas sp. SKA58]
          Length = 208

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 28/38 (73%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LT REVECL W + GKT++EI +ILG+ R TV  +I S
Sbjct: 144 LTKREVECLRWAAAGKTNEEIGIILGLQRTTVRFHIRS 181


>gi|229164358|ref|ZP_04292288.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           R309803]
 gi|228619101|gb|EEK75997.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           R309803]
          Length = 215

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|153011539|ref|YP_001372753.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
 gi|151563427|gb|ABS16924.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
          Length = 260

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 191 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 250

Query: 246 V 246
           +
Sbjct: 251 I 251


>gi|307944862|ref|ZP_07660200.1| ATP-dependent transcription regulator LuxR [Roseibium sp.
           TrichSKD4]
 gi|307772076|gb|EFO31299.1| ATP-dependent transcription regulator LuxR [Roseibium sp.
           TrichSKD4]
          Length = 240

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGI 212
           +L+DR  E   LA +     K   +H       LT RE+ECL W+S G  + E+A  L I
Sbjct: 147 VLQDREAEFHFLANFLHLRMKDVALHAHSSAPVLTRRELECLKWLSAGLRTAELADKLAI 206

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           S  TV  +I +   K + KTR  A+A AV
Sbjct: 207 SGPTVEFHIKNAREKLSAKTREQAVARAV 235


>gi|228924157|ref|ZP_04087433.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228835647|gb|EEM81012.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 214

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 154 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|297196049|ref|ZP_06913447.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197723312|gb|EDY67220.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 219

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H   D  LT RE E L  ++EG++S +IA IL IS  TV  + A+++RK   + R     
Sbjct: 150 HETPDQILTAREEEVLKLVAEGRSSKDIAEILFISVKTVQRHRANLLRKLGLRDRLDLTR 209

Query: 239 YAVRNNIV 246
           YA+R  ++
Sbjct: 210 YAIRAGLI 217


>gi|91978329|ref|YP_570988.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91684785|gb|ABE41087.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 309

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  +F LT RE E L W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R
Sbjct: 240 EFATEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294


>gi|294142230|ref|YP_003558208.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328699|dbj|BAJ03430.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 250

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L W SEGK+S EI +I  I+  TV  ++ +I +K   + R+ AI  A+R  
Sbjct: 189 ELTKREREILAWSSEGKSSWEIGMICSITERTVKFHLKNIYKKLNVQNRAQAIVCAIRQG 248

Query: 245 IV 246
           ++
Sbjct: 249 LI 250


>gi|228911248|ref|ZP_04075053.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 200]
 gi|228848424|gb|EEM93273.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 200]
          Length = 215

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|83720643|ref|YP_442349.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83654468|gb|ABC38531.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 241

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A 
Sbjct: 180 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 235


>gi|51893773|ref|YP_076464.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857462|dbj|BAD41620.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 224

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE + L  I+ G T+ EIA  LG+S NTV NY+ SI+ K   + R  A A+A+ N
Sbjct: 157 LSPREAQILRRIAAGNTNREIAEQLGLSENTVKNYVKSILAKLNLENRVQAAAWALNN 214


>gi|71057001|emb|CAI51628.1| eR transcriptional regulator [Acidithiobacillus ferrooxidans]
          Length = 214

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +L+ REVE L W  EGKTS EIA IL I+  TVN +I+  M K     ++ A+  A 
Sbjct: 152 QLSCREVEVLRWTGEGKTSGEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAA 208


>gi|260467388|ref|ZP_05813560.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028848|gb|EEW30152.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 242

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L W ++GK++D+IA ILG++RNTV ++  +I  K      + AI  A+R  
Sbjct: 180 LTARERELLEWSAQGKSTDDIACILGVTRNTVESHQRNIRAKLDAINVAHAIVKALRRQ 238


>gi|295402434|ref|ZP_06812387.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112712|ref|YP_003991028.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975525|gb|EFG51150.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217813|gb|ADP76417.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 210

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 42/62 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  +++GKT+ EIA  L I+  TV  ++++I+ K   + R+ A+ YA +++
Sbjct: 148 ELTNREMEVLLLMAQGKTNQEIADELFIAVKTVKVHVSNILSKLGVQDRTQAVIYAFKHS 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|229000199|ref|ZP_04159768.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
 gi|229007721|ref|ZP_04165313.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228753589|gb|EEM03035.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228759531|gb|EEM08508.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
          Length = 215

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILGKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|73662256|ref|YP_301037.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72494771|dbj|BAE18092.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 207

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E LT +++GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA++NN
Sbjct: 146 KLSKRESEVLTEMAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVTDRTQAAIYAMQNN 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|56421302|ref|YP_148620.1| hypothetical protein GK2767 [Geobacillus kaustophilus HTA426]
 gi|56381144|dbj|BAD77052.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 500

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++EG ++ E A  L +S  TV +Y+++I++K   K R+ AI  A+R+ I
Sbjct: 440 LSPREIEVLKLVAEGASTYEAAKRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDGI 499

Query: 246 V 246
           +
Sbjct: 500 I 500


>gi|325291914|ref|YP_004277778.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059767|gb|ADY63458.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 248

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+ CL    +G+ S+EIAV LG+S +TVN Y+ S   K  +  R  AIA A+R
Sbjct: 187 LSEREIACLQLAGDGRISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243


>gi|238795934|ref|ZP_04639446.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
 gi|238720139|gb|EEQ11943.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
          Length = 245

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 15/119 (12%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD---VHWGKD 183
           D+ Y   + +V + +I ++L+    +           +L  YQ N+ ++ +   V  G++
Sbjct: 132 DSIYFDESIEVNKEKIQMLLILTHDK-----------MLGLYQKNINENNELGKVPNGRE 180

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              + RE E L W S GKT  EIA+ILGI R+TV  +I +++RK        AI   + 
Sbjct: 181 I-FSPRENEILYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIE 238


>gi|182677912|ref|YP_001832058.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633795|gb|ACB94569.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 268

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 169 QANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           Q   F+ +    G D   +T RE+E L+W +EGKT ++I+V++ IS+ TV  ++ S   K
Sbjct: 189 QQRAFEMHHQDEGIDINTITKREIEALSWSAEGKTLEDISVLMRISQETVKAHLDSARYK 248

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R  A+A A+R  ++
Sbjct: 249 LGALNRIHAVAKAIRAGLI 267


>gi|30023441|ref|NP_835072.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228961674|ref|ZP_04123282.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229051082|ref|ZP_04194629.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH676]
 gi|229112824|ref|ZP_04242356.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-15]
 gi|229130659|ref|ZP_04259615.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-Cer4]
 gi|229147955|ref|ZP_04276296.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST24]
 gi|296505833|ref|YP_003667533.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
 gi|29899002|gb|AAP12273.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228635605|gb|EEK92094.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST24]
 gi|228652998|gb|EEL08880.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-Cer4]
 gi|228670658|gb|EEL25970.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-15]
 gi|228722293|gb|EEL73691.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH676]
 gi|228798024|gb|EEM45029.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|296326885|gb|ADH09813.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
          Length = 215

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|13488404|ref|NP_109411.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14028158|dbj|BAB54750.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 242

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L W ++GK++D+IA ILG++RNTV ++  +I  K      + AI  A+R  
Sbjct: 180 LTARERELLEWSAQGKSTDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRRQ 238


>gi|76811685|ref|YP_334182.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 1710b]
 gi|124386221|ref|YP_001028861.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126450742|ref|YP_001081227.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10247]
 gi|167003830|ref|ZP_02269610.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|167720437|ref|ZP_02403673.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei DM98]
 gi|167816634|ref|ZP_02448314.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167825038|ref|ZP_02456509.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
 gi|167846546|ref|ZP_02472054.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167895126|ref|ZP_02482528.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167903510|ref|ZP_02490715.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167919762|ref|ZP_02506853.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
 gi|242317090|ref|ZP_04816106.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254195948|ref|ZP_04902374.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|76581138|gb|ABA50613.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710b]
 gi|124294241|gb|ABN03510.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
 gi|126243612|gb|ABO06705.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10247]
 gi|169652693|gb|EDS85386.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|242140329|gb|EES26731.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|243060693|gb|EES42879.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
          Length = 237

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A 
Sbjct: 176 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 231


>gi|15887874|ref|NP_353555.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15155462|gb|AAK86340.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 251

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+ CL    +G+ S+EIAV LG+S +TVN Y+ S   K  +  R  AIA A+R
Sbjct: 190 LSEREIACLQLAGDGRISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 246


>gi|239834457|ref|ZP_04682785.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301]
 gi|239822520|gb|EEQ94089.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301]
          Length = 260

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 191 LTPREVDCLRWAANGKTDGEIAEILNIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 250

Query: 246 V 246
           +
Sbjct: 251 I 251


>gi|271962079|ref|YP_003336275.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505254|gb|ACZ83532.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 212

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT I+ G+++ EIA  L ++  TV  ++++++ K   + R+ A  YAVRN +
Sbjct: 152 LTDREREVLTLIASGRSNREIARELAVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRNGL 211


>gi|218675092|ref|ZP_03524761.1| LuxR family transcriptional regulator [Rhizobium etli GR56]
          Length = 81

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E + W++ GKT+ EI  IL IS  TVN +IA+   K      +  +A A+RN I
Sbjct: 20  VTPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKLGVFKETALVAAALRNGI 79

Query: 246 V 246
           +
Sbjct: 80  I 80


>gi|53725659|ref|YP_102421.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           ATCC 23344]
 gi|121600864|ref|YP_993677.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           SAVP1]
 gi|126442199|ref|YP_001059696.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|126451641|ref|YP_001066980.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134277810|ref|ZP_01764525.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|217421088|ref|ZP_03452593.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226200000|ref|ZP_03795550.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237813089|ref|YP_002897540.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238562977|ref|ZP_00439585.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|254177786|ref|ZP_04884441.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|254184304|ref|ZP_04890894.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1655]
 gi|254199322|ref|ZP_04905688.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|254205635|ref|ZP_04911987.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|254261005|ref|ZP_04952059.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254296964|ref|ZP_04964417.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|254357791|ref|ZP_04974064.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|52429082|gb|AAU49675.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 23344]
 gi|121229674|gb|ABM52192.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei SAVP1]
 gi|126221692|gb|ABN85198.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
 gi|126225283|gb|ABN88823.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|134251460|gb|EBA51539.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|147748918|gb|EDK55992.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|147753078|gb|EDK60143.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|148026918|gb|EDK84939.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|157806879|gb|EDO84049.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|160698825|gb|EDP88795.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|184214835|gb|EDU11878.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1655]
 gi|217396500|gb|EEC36517.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225928056|gb|EEH24093.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237504732|gb|ACQ97050.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238521581|gb|EEP85031.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|254219694|gb|EET09078.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
          Length = 241

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A 
Sbjct: 180 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 235


>gi|225628596|ref|ZP_03786630.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225616442|gb|EEH13490.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo]
          Length = 268

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 199 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 258

Query: 246 V 246
           +
Sbjct: 259 I 259


>gi|294853143|ref|ZP_06793815.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR
           [Brucella sp. NVSL 07-0026]
 gi|294818798|gb|EFG35798.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR
           [Brucella sp. NVSL 07-0026]
          Length = 268

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 199 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 258

Query: 246 V 246
           +
Sbjct: 259 I 259


>gi|167739431|ref|ZP_02412205.1| LuxR family regulatory protein [Burkholderia pseudomallei 14]
 gi|167911761|ref|ZP_02498852.1| LuxR family regulatory protein [Burkholderia pseudomallei 112]
 gi|254191335|ref|ZP_04897839.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157939007|gb|EDO94677.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 237

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A 
Sbjct: 176 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 231


>gi|226312803|ref|YP_002772697.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095751|dbj|BAH44193.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 228

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  I++G  +D+IA  L IS  TV  ++  I++K   + R+ A+A A+R+ 
Sbjct: 166 ELTDRELDVLQQIADGYRNDQIAQNLFISEGTVKTHVHRILQKMGVEDRTQAVAKALRHK 225

Query: 245 IV 246
           IV
Sbjct: 226 IV 227


>gi|187930859|ref|YP_001901345.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|241664112|ref|YP_002982472.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|187728903|gb|ACD30066.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|240866139|gb|ACS63800.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 201

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           L++  Q  + +    H      +L+ RE E L W + GKTS EIA ILG+S+ TV+ ++ 
Sbjct: 116 LISIVQTRLARRPRTHAAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +   K    TR  A+  A    I+
Sbjct: 176 NAREKLGVATRIEAVVRASSAGII 199


>gi|75760127|ref|ZP_00740188.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218900537|ref|YP_002448948.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903890|ref|ZP_04068005.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 4222]
 gi|228968544|ref|ZP_04129531.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74492399|gb|EAO55554.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542579|gb|ACK94973.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791148|gb|EEM38763.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228855799|gb|EEN00344.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 4222]
          Length = 215

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|300088572|ref|YP_003759094.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528305|gb|ADJ26773.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 220

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E LT I+ GK + EIA  L I   TV N+I  I  K   K+R  AI+Y +R N
Sbjct: 159 LTAREIEILTLIAAGKGNREIAETLFIEEKTVKNHINVIYSKLRIKSRYEAISYMLRQN 217


>gi|218460014|ref|ZP_03500105.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 198

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+ +
Sbjct: 137 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHGL 196

Query: 246 V 246
           +
Sbjct: 197 I 197


>gi|258541258|ref|YP_003186691.1| LuxR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632336|dbj|BAH98311.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635393|dbj|BAI01362.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638448|dbj|BAI04410.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641502|dbj|BAI07457.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644557|dbj|BAI10505.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647612|dbj|BAI13553.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650665|dbj|BAI16599.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653656|dbj|BAI19583.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 299

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           K   LT RE E L WI++GKT+ +IA IL IS  TVN ++     K   + R+ A A
Sbjct: 235 KRLNLTAREAEVLFWIAKGKTNRDIAEILSISHRTVNKHLEQSYIKIGVENRAAATA 291


>gi|167837236|ref|ZP_02464119.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 237

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A 
Sbjct: 176 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 231


>gi|311103299|ref|YP_003976152.1| sensory box protein 1 [Achromobacter xylosoxidans A8]
 gi|310757988|gb|ADP13437.1| sensory box protein 1 [Achromobacter xylosoxidans A8]
          Length = 499

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+  +LT RE E L  + +G T  EIA  L +SRNTV N++A++  K     RS AI +A
Sbjct: 422 GELADLTPREREILGLMCQGHTDAEIAASLHLSRNTVRNHVAALYSKLDVHRRSAAIIWA 481

Query: 241 VRNNIV 246
            +  IV
Sbjct: 482 RQRGIV 487


>gi|90022619|ref|YP_528446.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952219|gb|ABD82234.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 303

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F +T RE +   W+++GKT+ EIA I+ IS  TVN ++  + +K A   R+ A A A+
Sbjct: 236 EQFGITKRESDVFLWLAKGKTNREIAQIIDISPRTVNKHLEQLFKKLAVDNRTTAAAMAI 295

Query: 242 R 242
           +
Sbjct: 296 Q 296


>gi|53719957|ref|YP_108943.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|52210371|emb|CAH36350.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|156105364|gb|ABU49181.1| BpsR5 [Burkholderia pseudomallei]
          Length = 241

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A 
Sbjct: 180 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 235


>gi|327189418|gb|EGE56584.1| LuxR family transcriptional regulator [Rhizobium etli CNPAF512]
          Length = 65

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E + W++ GKT+ EI  IL IS  TVN +IA+   K      +  +A A+RN I
Sbjct: 4   VTPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKLGVFKETALVAEALRNGI 63

Query: 246 V 246
           +
Sbjct: 64  I 64


>gi|148558318|ref|YP_001257186.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148369603|gb|ABQ62475.1| transcriptional regulator, LuxR family [Brucella ovis ATCC 25840]
          Length = 268

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 199 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 258

Query: 246 V 246
           +
Sbjct: 259 I 259


>gi|332528409|ref|ZP_08404401.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332042088|gb|EGI78422.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 312

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E L+W+++GKT+ +I  ILG+S  TVN ++  I  K   +TR+
Sbjct: 251 LTPRETEVLSWLAKGKTNRDIGDILGMSPRTVNKHLEHIFEKLGVETRT 299


>gi|294010385|ref|YP_003543845.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673715|dbj|BAI95233.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 265

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 28/38 (73%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LT REVECL W + GKT++EI +ILG+ R TV  +I S
Sbjct: 201 LTKREVECLRWAAAGKTNEEIGIILGLQRTTVRFHIRS 238


>gi|291616969|ref|YP_003519711.1| SdiA [Pantoea ananatis LMG 20103]
 gi|291151999|gb|ADD76583.1| SdiA [Pantoea ananatis LMG 20103]
 gi|327393397|dbj|BAK10819.1| cell division activating regulatory protein SdiA [Pantoea ananatis
           AJ13355]
          Length = 240

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G DF  + RE+E L W +EGKTS EI++IL IS +TVN Y  ++ ++     ++    YA
Sbjct: 177 GNDF--SQRELEILRWTAEGKTSQEISLILSISEHTVNFYQKNMKKRFNVSNKTQIACYA 234

Query: 241 V 241
            
Sbjct: 235 A 235


>gi|270308516|ref|YP_003330574.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270154408|gb|ACZ62246.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 225

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 180 WGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            GKD       LT RE + LT I+ G T+ +IA  L IS  T+ N++++I+RK     R+
Sbjct: 152 LGKDASNFVTPLTNREKQILTLIANGNTNKQIANSLEISEQTIKNHVSAILRKLNANDRA 211

Query: 235 GAIAYAVR 242
            A+  A+R
Sbjct: 212 HAVVVAIR 219


>gi|18104535|gb|AAL59595.1|AF393621_2 CinR [Rhizobium etli]
          Length = 241

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I
Sbjct: 179 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074734|gb|ADJ64133.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 318

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L W+ +GKT+ +IA ILG+S  TVN ++  I  K   +TRS A   A
Sbjct: 259 LTPRESDVLLWLGKGKTNRDIADILGMSPRTVNKHLEHIFVKLGVETRSAAAVLA 313


>gi|297560053|ref|YP_003679027.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844501|gb|ADH66521.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 200

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT REV+ L   SEG +  +IA  L ++  TV NY+++ M+KT T+TR  A  YA
Sbjct: 137 DCPLTDREVDVLRATSEGYSVADIAAQLHLAEGTVRNYLSNAMQKTQTRTRHEAARYA 194


>gi|256014910|ref|YP_003104919.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915]
 gi|255997570|gb|ACU49257.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915]
          Length = 259

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249

Query: 246 V 246
           +
Sbjct: 250 I 250


>gi|226311708|ref|YP_002771602.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094656|dbj|BAH43098.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 215

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + ++  GKT+ EI+  L I+ NTV N++ +I+ K     R    AYAVR+++
Sbjct: 153 LTPREREIVMYVGAGKTNREISEALIIAENTVKNHLKNILEKLQLANRVQLAAYAVRHHL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|288919634|ref|ZP_06413962.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288348923|gb|EFC83172.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 90

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+ YAVR  +
Sbjct: 27  LTDREMEVLRLVAKGLNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 86

Query: 246 V 246
           +
Sbjct: 87  L 87


>gi|117165074|emb|CAJ88627.1| putative two component response regulator-like [Streptomyces
           ambofaciens ATCC 23877]
          Length = 223

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +  +    H  ++  LT RE E L  ++EG ++ +IA  LGIS + V   +AS++ K   
Sbjct: 146 DRLRESGQHRPREVSLTARENEVLLLLAEGMSNKQIARRLGISSHGVKRIVASLLLKLGA 205

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+  A++N ++
Sbjct: 206 PNRTAAVVTAIQNGLI 221


>gi|229035051|ref|ZP_04188998.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1271]
 gi|228728236|gb|EEL79265.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1271]
          Length = 215

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|167563421|ref|ZP_02356337.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
 gi|167570595|ref|ZP_02363469.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 237

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A 
Sbjct: 176 LTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAA 231


>gi|306841076|ref|ZP_07473798.1| regulatory protein LuxR [Brucella sp. BO2]
 gi|306846307|ref|ZP_07478868.1| regulatory protein LuxR [Brucella sp. BO1]
 gi|306273302|gb|EFM55171.1| regulatory protein LuxR [Brucella sp. BO1]
 gi|306288886|gb|EFM60191.1| regulatory protein LuxR [Brucella sp. BO2]
          Length = 258

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 189 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 248

Query: 246 V 246
           +
Sbjct: 249 I 249


>gi|254699430|ref|ZP_05161258.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
 gi|261749881|ref|ZP_05993590.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
 gi|261739634|gb|EEY27560.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
          Length = 259

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249

Query: 246 V 246
           +
Sbjct: 250 I 250


>gi|228991252|ref|ZP_04151210.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228997351|ref|ZP_04156973.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|229004976|ref|ZP_04162703.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228756324|gb|EEM05642.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228762443|gb|EEM11368.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|228768476|gb|EEM17081.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 211

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV+N +
Sbjct: 151 LTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGV 210

Query: 246 V 246
           V
Sbjct: 211 V 211


>gi|255600849|ref|XP_002537550.1| conserved hypothetical protein [Ricinus communis]
 gi|223515958|gb|EEF24832.1| conserved hypothetical protein [Ricinus communis]
          Length = 219

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE E L W+  GKT+ EI +IL IS NTV N++  I +K     R+ A+A
Sbjct: 155 LSDREQEILHWVRSGKTNLEIGMILNISANTVKNHLKRIFQKLDVSCRAQAVA 207


>gi|86748375|ref|YP_484871.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86571403|gb|ABD05960.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 309

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +F LT RE E L W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R
Sbjct: 244 EFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294


>gi|187927560|ref|YP_001898047.1| LuxR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187724450|gb|ACD25615.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12J]
          Length = 253

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE ECL W + GKTS EIA IL +S  TV  +I +  +K     R  A+A A+
Sbjct: 191 LTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQAVARAI 246


>gi|325293644|ref|YP_004279508.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325061497|gb|ADY65188.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 238

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ + W ++GKTS EIA +L IS +TVN Y+ + +RK     R+  +A  +R  +
Sbjct: 177 LTKRELDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAIRKLDCVNRAQLVAKTIRLGL 236

Query: 246 V 246
           +
Sbjct: 237 I 237


>gi|254720638|ref|ZP_05182449.1| regulatory protein LuxR [Brucella sp. 83/13]
 gi|265985682|ref|ZP_06098417.1| regulatory protein LuxR [Brucella sp. 83/13]
 gi|264664274|gb|EEZ34535.1| regulatory protein LuxR [Brucella sp. 83/13]
          Length = 259

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249

Query: 246 V 246
           +
Sbjct: 250 I 250


>gi|307152023|ref|YP_003887407.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306982251|gb|ADN14132.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 226

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 17/191 (8%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITPP----- 123
           Q+  S++ +  P  LV  + +   D Y     V QRP     PV     ++ T       
Sbjct: 36  QEALSLLETYHPHLLVSDIKMPRTDGYELVAQVRQRPEFRLLPVVFLTEKSTTHERIRGY 95

Query: 124 -AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            AG D  Y    F++  +   +  L  + +I+  +  ++   L   QA + KS       
Sbjct: 96  QAGCDV-YLPKPFEMEELGAVIRNLLERSQIMESEWRYKNRQLQEKQAELKKSQPPPPLP 154

Query: 183 DF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +        ELT RE + L  +++G ++ EI   L +S  TV  Y++S++RKT T  R+ 
Sbjct: 155 ELPTLNPPPELTAREKQVLELLAQGLSNVEIGQQLHLSPRTVEKYVSSLLRKTETNNRAE 214

Query: 236 AIAYAVRNNIV 246
            + +A+ +++V
Sbjct: 215 LVRFALEHHLV 225


>gi|182677961|ref|YP_001832107.1| two component LuxR family transcriptional regulator [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633844|gb|ACB94618.1| two component transcriptional regulator, LuxR family [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 309

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E LTW++ GK++ +I  ILG+S  TV+ ++  +  K   + R  A A A++ 
Sbjct: 246 LNLTSREAEVLTWVARGKSNRDIGEILGLSPRTVDKHLEQVYAKIGVENRVAATALAIQT 305


>gi|163943094|ref|YP_001647978.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229014574|ref|ZP_04171690.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
 gi|229065062|ref|ZP_04200357.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH603]
 gi|229136229|ref|ZP_04264978.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST196]
 gi|229170116|ref|ZP_04297805.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH621]
 gi|163865291|gb|ABY46350.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
 gi|228613347|gb|EEK70483.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH621]
 gi|228647209|gb|EEL03295.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST196]
 gi|228716204|gb|EEL67920.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH603]
 gi|228746726|gb|EEL96613.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
          Length = 215

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHMSSILSKLHLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|328951086|ref|YP_004368421.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451410|gb|AEB12311.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 216

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT REV+ L  +++G T+ EIA  LG+S  TV N ++ I  K     R+ A  YA+R  
Sbjct: 151 ELTEREVQILRLLAQGATNQEIADELGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREG 210

Query: 245 IV 246
           + 
Sbjct: 211 LA 212


>gi|269837258|ref|YP_003319486.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786521|gb|ACZ38664.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 549

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++EGKT+  IA  L IS  TV  +I++I  K    +R+ A AYA  + I
Sbjct: 485 LTAREVEVLRLVAEGKTNRAIAEDLFISEKTVARHISNIFTKLDLSSRAAATAYAYEHGI 544

Query: 246 V 246
           V
Sbjct: 545 V 545


>gi|17230648|ref|NP_487196.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132251|dbj|BAB74855.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LTGRE+E L  +++GKT+ EIA +L I+  TV  ++ +I+ K     R  A+  A++
Sbjct: 157 DHPLTGRELEILALLAKGKTNQEIATVLYITPGTVRVHVHAILHKLEVSDRHQAVVVALQ 216

Query: 243 NNIV 246
             ++
Sbjct: 217 KRLI 220


>gi|23499883|ref|NP_699323.1| LuxR family transcriptional regulator [Brucella suis 1330]
 gi|62317073|ref|YP_222926.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269066|ref|YP_418357.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|161620206|ref|YP_001594092.1| regulatory protein LuxR [Brucella canis ATCC 23365]
 gi|163844315|ref|YP_001621970.1| hypothetical protein BSUIS_B0125 [Brucella suis ATCC 23445]
 gi|189022339|ref|YP_001932080.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225685981|ref|YP_002733953.1| regulatory protein LuxR [Brucella melitensis ATCC 23457]
 gi|254691441|ref|ZP_05154695.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|254695262|ref|ZP_05157090.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|254698360|ref|ZP_05160188.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|254711984|ref|ZP_05173795.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|254715054|ref|ZP_05176865.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|254731805|ref|ZP_05190383.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|256043041|ref|ZP_05445986.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|256059638|ref|ZP_05449835.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|256111973|ref|ZP_05452924.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|256256626|ref|ZP_05462162.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|256262895|ref|ZP_05465427.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260544312|ref|ZP_05820133.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260564274|ref|ZP_05834759.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260568545|ref|ZP_05839014.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260757058|ref|ZP_05869406.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|260759571|ref|ZP_05871919.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|260762815|ref|ZP_05875147.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882868|ref|ZP_05894482.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|261215627|ref|ZP_05929908.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|261216761|ref|ZP_05931042.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|261319628|ref|ZP_05958825.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|261323608|ref|ZP_05962805.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|265989480|ref|ZP_06102037.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993421|ref|ZP_06105978.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|297249982|ref|ZP_06933683.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196]
 gi|75505158|sp|Q579W9|VJBR_BRUAB RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|81751697|sp|Q8FXF9|VJBR_BRUSU RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|123754460|sp|Q2YJ50|VJBR_BRUA2 RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|190360175|sp|Q8YAY5|VJBR_BRUME RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|23463458|gb|AAN33328.1| transcriptional regulator, LuxR family [Brucella suis 1330]
 gi|62197266|gb|AAX75565.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82939340|emb|CAJ12284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           biovar Abortus 2308]
 gi|161337017|gb|ABX63321.1| regulatory protein LuxR [Brucella canis ATCC 23365]
 gi|163675038|gb|ABY39148.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020913|gb|ACD73634.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225642086|gb|ACO01999.1| regulatory protein LuxR [Brucella melitensis ATCC 23457]
 gi|260097583|gb|EEW81457.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260151917|gb|EEW87010.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260155210|gb|EEW90291.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669889|gb|EEX56829.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|260673236|gb|EEX60057.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677166|gb|EEX63987.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|260872396|gb|EEX79465.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|260917234|gb|EEX84095.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|260921850|gb|EEX88418.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|261292318|gb|EEX95814.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|261299588|gb|EEY03085.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|262764291|gb|EEZ10323.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|263000149|gb|EEZ12839.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092732|gb|EEZ16941.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|297173851|gb|EFH33215.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196]
 gi|326410305|gb|ADZ67369.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326553598|gb|ADZ88237.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           M5-90]
          Length = 259

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249

Query: 246 V 246
           +
Sbjct: 250 I 250


>gi|254706324|ref|ZP_05168152.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|254711385|ref|ZP_05173196.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|256029985|ref|ZP_05443599.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
 gi|256158149|ref|ZP_05456065.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|256252900|ref|ZP_05458436.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261219988|ref|ZP_05934269.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261313770|ref|ZP_05952967.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|261318991|ref|ZP_05958188.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|265987006|ref|ZP_06099563.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
 gi|265996667|ref|ZP_06109224.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|260918572|gb|EEX85225.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261298214|gb|EEY01711.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|261302796|gb|EEY06293.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|262550964|gb|EEZ07125.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|264659203|gb|EEZ29464.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
          Length = 259

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249

Query: 246 V 246
           +
Sbjct: 250 I 250


>gi|221196069|ref|ZP_03569116.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2M]
 gi|221202743|ref|ZP_03575762.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2]
 gi|221176677|gb|EEE09105.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2]
 gi|221182623|gb|EEE15023.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2M]
          Length = 239

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|190893853|ref|YP_001980395.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190699132|gb|ACE93217.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 251

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+ +
Sbjct: 190 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQGKLKAKNRQQAVALAFRHGL 249

Query: 246 V 246
           +
Sbjct: 250 I 250


>gi|190892657|ref|YP_001979199.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT
           652]
 gi|190697936|gb|ACE92021.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 260

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I
Sbjct: 198 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 257

Query: 246 V 246
           +
Sbjct: 258 I 258


>gi|330809090|ref|YP_004353552.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377198|gb|AEA68548.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 272

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E++CL W SEGKT+ EI+ IL  S  T++ ++ +  RK  + +R  A++ AV   
Sbjct: 192 DLTPKEMDCLYWASEGKTTWEISHILTCSERTIDFHLLNARRKLGSVSRQQAVSAAVACG 251

Query: 245 IV 246
           +V
Sbjct: 252 LV 253


>gi|229085213|ref|ZP_04217456.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228698080|gb|EEL50822.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 211

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV+N +
Sbjct: 151 LTKREKEVLREITKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGV 210

Query: 246 V 246
           V
Sbjct: 211 V 211


>gi|149915149|ref|ZP_01903677.1| two-component response regulator, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810870|gb|EDM70709.1| two-component response regulator, putative [Roseobacter sp.
           AzwK-3b]
          Length = 299

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  I RD L +I LL         S +      F+LT RE E L W++ GKT+ +I+ IL
Sbjct: 208 GVSIARDYLVKITLLEG------ASNEEKLRAAFDLTARESEVLFWLTLGKTNRDISAIL 261

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +S  TVN ++  + +K     R+ A   A R
Sbjct: 262 DLSARTVNKHLEQVFQKMGVDNRTSAAVLADR 293


>gi|206558215|sp|A5VTN1|VJBR_BRUO2 RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
          Length = 259

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 190 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 249

Query: 246 V 246
           +
Sbjct: 250 I 250


>gi|47177072|ref|YP_015683.1| hypothetical protein pHCG3_p118 [Oligotropha carboxidovorans OM5]
 gi|47115463|emb|CAG28516.1| probable TraR [Oligotropha carboxidovorans OM5]
          Length = 239

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT REV CLTW S GKT  EIA +L I   TV NY+     K      + A+  AV  
Sbjct: 177 YELTPREVTCLTWASLGKTMSEIADLLQIDVRTVRNYLDLAREKLGGSNIAHAVRLAVMQ 236

Query: 244 NIV 246
           +++
Sbjct: 237 HLI 239


>gi|328951621|ref|YP_004368956.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451945|gb|AEB12846.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 222

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT REV+ L  +++G T+ EIA  LG+S  TV N ++ I  K     R+ A  YA+R  
Sbjct: 151 ELTEREVQILRLLAQGATNQEIADELGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREG 210

Query: 245 IV 246
           + 
Sbjct: 211 LA 212


>gi|188586933|ref|YP_001918478.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351620|gb|ACB85890.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 228

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELTGRE E L  +++G T+ EI+  L IS  TV N++++I+RK     R+ A+  A++  
Sbjct: 165 ELTGREKEILELMAQGYTNKEISKELYISEKTVKNHVSNILRKMDVTDRTQAVITALKCG 224

Query: 245 IV 246
           +V
Sbjct: 225 VV 226


>gi|311743637|ref|ZP_07717443.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum
           DSM 15272]
 gi|311312767|gb|EFQ82678.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum
           DSM 15272]
          Length = 220

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +++G ++ EIA  L IS NTV N+I +I+ K   K+R  A  YAVR+ +
Sbjct: 157 LTARELQVLRHVAKGFSNREIAGELFISENTVKNHIRNILEKLQMKSRMEAAMYAVRSRL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|12620899|gb|AAG61129.1|AF330018_1 AHL receptor [Burkholderia cepacia ATCC 25416]
 gi|17939926|emb|CAD19536.1| CepR protein [Burkholderia cepacia]
 gi|288551614|gb|ADC53303.1| transcriptional activator [Burkholderia cepacia]
          Length = 239

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|138894116|ref|YP_001124569.1| DNA-binding response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250655|ref|ZP_03149344.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
 gi|134265629|gb|ABO65824.1| DNA-binding response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209874|gb|EDY04644.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
          Length = 210

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +++GKT+ E+A  L IS  TV  ++++I+ K   + R+ A+ YA R+ 
Sbjct: 148 QLTSREMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|50085580|ref|YP_047090.1| putative two-component response regulator protein [Acinetobacter
           sp. ADP1]
 gi|49531556|emb|CAG69268.1| putative two-component response regulator protein [Acinetobacter
           sp. ADP1]
          Length = 320

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E   W++ GKT+ +IA IL +S  TVN ++  I  K   + R+ A+AY
Sbjct: 256 QLTQREAEVSHWLALGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAY 310


>gi|149923436|ref|ZP_01911840.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
 gi|149815688|gb|EDM75215.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
          Length = 220

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT + EGK+S EIA ILG+S  T+  +   IM K      +G +  A+R  +
Sbjct: 156 LTKREREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGVHNVAGLVRQAIRIGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|313201574|ref|YP_004040232.1| LuxR family transcriptional regulator [Methylovorus sp. MP688]
 gi|26005747|dbj|BAC41336.1| transcription regulator like protein EpsA [Methylobacillus sp. 12S]
 gi|312440890|gb|ADQ84996.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688]
          Length = 265

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           L   + A+   S D+H  ++    +L+ RE+E + W+  GKT+ EI +IL IS  TV N+
Sbjct: 179 LPVQHPADKEASEDLHEEENEALEQLSSREIEIMEWVRNGKTNQEIGMILDISSFTVKNH 238

Query: 221 IASIMRKTATKTRSGAIA 238
           +  I +K     R+ A++
Sbjct: 239 LQRIFKKLDVLNRAQAVS 256


>gi|115526593|ref|YP_783504.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115520540|gb|ABJ08524.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 309

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           K+  LT RE E L+W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R+
Sbjct: 243 KELGLTTRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRT 295


>gi|228955660|ref|ZP_04117658.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229072878|ref|ZP_04206076.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           F65185]
 gi|229082623|ref|ZP_04215086.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock4-2]
 gi|229153573|ref|ZP_04281751.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1550]
 gi|228630177|gb|EEK86828.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1550]
 gi|228701055|gb|EEL53578.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock4-2]
 gi|228710221|gb|EEL62197.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           F65185]
 gi|228804029|gb|EEM50650.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 215

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ E+A +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|14586754|gb|AAK70349.1|AF333004_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans ATCC BAA-247]
          Length = 239

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|291514919|emb|CBK64129.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Alistipes shahii WAL 8301]
          Length = 212

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +L+ RE E L  +  G ++ EIA  L IS+ TV+ + A+I+ KT  K  +  + YA+R
Sbjct: 147 DEQLSSREREILVAVCRGLSNQEIADELFISKRTVDKHRANILEKTGCKNTASLVVYAIR 206

Query: 243 NNIV 246
           N IV
Sbjct: 207 NGIV 210


>gi|253999547|ref|YP_003051610.1| LuxR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253986226|gb|ACT51083.1| transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4]
          Length = 265

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L+ RE+E + W+  GKT+ EI +IL IS  TV N++  I +K     R+ A++
Sbjct: 203 QLSSREIEIMEWVRNGKTNQEIGMILDISSFTVKNHLQRIFKKLDVLNRAQAVS 256


>gi|261418763|ref|YP_003252445.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297531272|ref|YP_003672547.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319765579|ref|YP_004131080.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375220|gb|ACX77963.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|297254524|gb|ADI27970.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
 gi|317110445|gb|ADU92937.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 210

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +++GKT+ E+A  L IS  TV  ++++I+ K   + R+ A+ YA R+ 
Sbjct: 148 QLTSREMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|115524334|ref|YP_781245.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115518281|gb|ABJ06265.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisA53]
          Length = 246

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W ++GK++ EI  IL I++ T   ++A+  RK     ++ A+A A+R  +
Sbjct: 184 LTHRECETLNWTAQGKSAWEIGEILQIAQRTAEEHLATAARKLGAVNKTHAVAIAIRQKL 243

Query: 246 V 246
           +
Sbjct: 244 I 244


>gi|218514607|ref|ZP_03511447.1| autoinducer transcriptional regulator protein [Rhizobium etli 8C-3]
          Length = 161

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I
Sbjct: 99  LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 158

Query: 246 V 246
           +
Sbjct: 159 I 159


>gi|313679613|ref|YP_004057352.1| two component LuxR family transcriptional regulator [Oceanithermus
           profundus DSM 14977]
 gi|313152328|gb|ADR36179.1| two component transcriptional regulator, LuxR family [Oceanithermus
           profundus DSM 14977]
          Length = 219

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  +++G T+ EIA  LGIS  TV N ++ I  K     R+ A  YA+R  
Sbjct: 154 DLTDREVQILRLLAQGATNQEIADELGISEKTVRNRLSEIFSKLHLNNRTQAALYAIREG 213

Query: 245 IV 246
           + 
Sbjct: 214 LA 215


>gi|254788088|ref|YP_003075517.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237687530|gb|ACR14794.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 303

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             LT RE E L W++ GKT+ EI  ILG S  T+N ++  I +K   + R+ A A A++
Sbjct: 242 LPLTTRESEVLLWLARGKTNREIGQILGTSPRTINKHLEQIYKKLEVENRTTAAAKALQ 300


>gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 229

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G ++ EI   L +S  TV  Y++S++RKT T  R+  + +A+ N+
Sbjct: 167 ELTEREKQVLELLAQGLSNVEIGQKLHLSPRTVEKYVSSLLRKTETNNRAELVRFALDND 226

Query: 245 IV 246
           +V
Sbjct: 227 LV 228


>gi|313158308|gb|EFR57710.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 211

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL++    M    DV    D +L+ RE E L  +  G ++ EIA  L IS+ TV+ + A+
Sbjct: 130 LLSSLTGRMRTRDDV---PDEQLSVREREILVAVCRGLSNQEIADELFISKRTVDKHRAN 186

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ KT  K  +  + YA+RN IV
Sbjct: 187 ILEKTGCKNTASLVVYAIRNGIV 209


>gi|297537928|ref|YP_003673697.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297257275|gb|ADI29120.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 247

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +T RE E L W+  GKT+ EI+ IL IS+ TV N++ +I+RK   + RS A   A +
Sbjct: 183 MTKRESEILQWLHMGKTNWEISSILDISQLTVKNHVQNILRKLDVQNRSQAAVKAAK 239


>gi|297529073|ref|YP_003670348.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252325|gb|ADI25771.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 500

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  ++EG ++ E A  L +S  TV +Y+++I++K   K R+ AI  A+R+ 
Sbjct: 439 HLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498

Query: 245 IV 246
           I+
Sbjct: 499 II 500


>gi|14586760|gb|AAK70352.1|AF333007_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           vietnamiensis]
          Length = 239

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|196230839|ref|ZP_03129700.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225180|gb|EDY19689.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 221

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +D+ LT RE E L  + +GKT  E A  L IS  T + YI S+  K   ++RS A+A A
Sbjct: 151 ARDYGLTPREQEILEVLVQGKTIKEAAAALKISYYTADEYIRSVYDKLQVRSRSSAVAKA 210

Query: 241 VRNNIV 246
           V   +V
Sbjct: 211 VSEGLV 216


>gi|327189685|gb|EGE56833.1| autoinducer transcriptional regulator protein [Rhizobium etli
           CNPAF512]
          Length = 277

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I
Sbjct: 215 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 274

Query: 246 V 246
           +
Sbjct: 275 I 275


>gi|310657820|ref|YP_003935541.1| two-component response regulator yhcz [Clostridium sticklandii DSM
           519]
 gi|308824598|emb|CBH20636.1| Two-component response regulator yhcZ [Clostridium sticklandii]
          Length = 213

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE++ ++ IS+G ++  IA  L IS  TV N+++SI+RK +   R+    Y +
Sbjct: 149 KSQKLTKRELQVMSLISKGMSNKAIAKHLEISDKTVKNHVSSILRKLSLNDRTQIAVYTL 208

Query: 242 RNNI 245
            NNI
Sbjct: 209 SNNI 212


>gi|294509070|ref|YP_003565959.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM
           B1551]
 gi|294352374|gb|ADE72696.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM
           B1551]
          Length = 202

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           KDFE LT  E + L  IS+ KT+ EI++ L IS+ TV  +I+SI+RK    +R GA+   
Sbjct: 134 KDFETLTSAEQKILLLISKDKTNYEISMDLSISKRTVEYHISSIIRKLDVDSRVGAVVKG 193

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 194 IKKGLI 199


>gi|251771224|gb|EES51805.1| two component transcriptional regulator, LuxR family
           [Leptospirillum ferrodiazotrophum]
          Length = 219

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L  ++EG+++ +IAV LGIS +TV  +I SI+ K +  TR+ A   A R  
Sbjct: 159 LSARETEVLRLLAEGQSNRDIAVALGISVSTVKAHIQSILVKLSAATRADAAVKAFRKG 217


>gi|206563716|ref|YP_002234479.1| N-acylhomoserine lactone dependent regulatory protein CepR
           [Burkholderia cenocepacia J2315]
 gi|198039756|emb|CAR55726.1| N-acylhomoserine lactone dependent regulatory protein CepR
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|12620907|gb|AAG61133.1|AF330022_1 AHL receptor [Burkholderia vietnamiensis]
          Length = 239

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|124268769|ref|YP_001022773.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124261544|gb|ABM96538.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 306

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L+W+++GKT+ +I  ILG+S  TVN ++  I  K   +TR
Sbjct: 245 LTPRETEVLSWLAKGKTNRDIGDILGVSPRTVNKHLEHIFEKLGVETR 292


>gi|310767240|gb|ADP12190.1| DNA-binding transcriptional activator SdiA [Erwinia sp. Ejp617]
          Length = 240

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +L+ RE+E L W +EGKTS EI++IL IS NTVN +   + ++     ++   +YA 
Sbjct: 178 LDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQIASYAA 235


>gi|167839488|ref|ZP_02466172.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           thailandensis MSMB43]
          Length = 239

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  ILGIS  TVN ++ +++ K     +  A+  A+   +
Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILGISERTVNFHVNNVLDKLGATNKVQAVVKAIAMGL 235

Query: 246 V 246
           V
Sbjct: 236 V 236


>gi|206975855|ref|ZP_03236766.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962901|ref|YP_002341479.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098883|ref|YP_002532941.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229142155|ref|ZP_04270680.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST26]
 gi|206745949|gb|EDZ57345.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217063637|gb|ACJ77887.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242942|gb|ACM15652.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228641444|gb|EEK97750.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST26]
          Length = 215

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N +
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGV 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|56418969|ref|YP_146287.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56378811|dbj|BAD74719.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 210

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +++GKT+ E+A  L IS  TV  ++++I+ K   + R+ A+ YA R+ 
Sbjct: 148 QLTSREMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|42784585|ref|NP_981832.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42740517|gb|AAS44440.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 215

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N +
Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGV 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|284045809|ref|YP_003396149.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950030|gb|ADB52774.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 381

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 36/53 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE+E L  ++EG+T+DEIA  L IS  TV  +++SI+RK     R+ A+A
Sbjct: 315 LTRRELEVLRLVAEGRTNDEIATALVISVGTVKFHVSSILRKLRVGNRAQAVA 367


>gi|241206011|ref|YP_002977107.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859901|gb|ACS57568.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 305

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 12/112 (10%)

Query: 137 VARIRIGLMLLFPKGRIILR-DRLWEIG-------LLAAYQANMFKSYDVHWGKDFELTG 188
           VA +R G++ +   G+  L+   L  IG       L AA Q    +S D    + F LT 
Sbjct: 191 VAAVRDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAASQ----RSDDEVLRQRFSLTQ 246

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           RE E L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 247 RESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|261418220|ref|YP_003251902.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319767820|ref|YP_004133321.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261374677|gb|ACX77420.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317112686|gb|ADU95178.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 500

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  ++EG ++ E A  L +S  TV +Y+++I++K   K R+ AI  A+R+ 
Sbjct: 439 HLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498

Query: 245 IV 246
           I+
Sbjct: 499 II 500


>gi|167463570|ref|ZP_02328659.1| hypothetical protein Plarl_13624 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381266|ref|ZP_08055269.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154842|gb|EFX47113.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 218

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L+ +++G T+ E+A +L IS  TV N+ A+IM K    TR   I +AV+  
Sbjct: 153 QLTDREKEILSLVAKGYTNKEVADLLSISAKTVENHKANIMDKLNLNTRRDLIRFAVKRG 212

Query: 245 IV 246
           ++
Sbjct: 213 LL 214


>gi|283478850|emb|CAY74766.1| DNA-binding transcriptional activator SdiA [Erwinia pyrifoliae DSM
           12163]
          Length = 242

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +L+ RE+E L W +EGKTS EI++IL IS NTVN +   + ++     ++   +YA 
Sbjct: 180 LDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQIASYAA 237


>gi|229181658|ref|ZP_04308983.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           172560W]
 gi|228601854|gb|EEK59350.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           172560W]
          Length = 215

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ E+A +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|327403986|ref|YP_004344824.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327319494|gb|AEA43986.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 224

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  I E KT+ EIA  L I++ TV  +  ++  KT  K  +G I YA++NNI
Sbjct: 156 LSERELEIIQLICEQKTAKEIADKLFINQRTVEGHKNNMFAKTGAKNIAGLIIYAIQNNI 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|307266655|ref|ZP_07548184.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918318|gb|EFN48563.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 208

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE+E L  IS+G ++ EIA  L +S  TV N++ +I +K   K R+ A  
Sbjct: 138 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 197

Query: 239 YAVRNNIV 246
           Y ++N  +
Sbjct: 198 YMLKNETI 205


>gi|221067422|ref|ZP_03543527.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220712445|gb|EED67813.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 254

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K FE LT RE E L  I++GK + EI   + IS  TV+ ++ +I RK   +TR+ A+ YA
Sbjct: 189 KKFEKLTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYA 248

Query: 241 VRNNIV 246
           V   I+
Sbjct: 249 VLKGII 254


>gi|90421195|ref|ZP_01229096.1| two-component response regulator, LuxR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334572|gb|EAS48355.1| two-component response regulator, LuxR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 299

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE E L W+S GK++ +IA IL +S  TVN ++ +I RK   + RS A A A+  
Sbjct: 240 REAEVLLWLSRGKSNQDIADILKLSVRTVNKHLETIFRKLGVENRSAATAIAMEQ 294


>gi|295400759|ref|ZP_06810736.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977340|gb|EFG52941.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 185

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 42/61 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E++ L +ISE +T+ EI+ +L IS+ TV ++++SI+RK    +R GA+  A++  I
Sbjct: 124 LTNVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRVGAVVKAMKLGI 183

Query: 246 V 246
           +
Sbjct: 184 L 184


>gi|289578700|ref|YP_003477327.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus
           Ab9]
 gi|297544934|ref|YP_003677236.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528413|gb|ADD02765.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter italicus Ab9]
 gi|296842709|gb|ADH61225.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 205

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE+E L  IS+G ++ EIA  L +S  TV N++ +I +K   K R+ A  
Sbjct: 135 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 194

Query: 239 YAVRNNIV 246
           Y ++N  +
Sbjct: 195 YMLKNETI 202


>gi|326391463|ref|ZP_08212998.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992489|gb|EGD50946.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 208

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE+E L  IS+G ++ EIA  L +S  TV N++ +I +K   K R+ A  
Sbjct: 138 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 197

Query: 239 YAVRNNIV 246
           Y ++N  +
Sbjct: 198 YMLKNETI 205


>gi|242237587|ref|YP_002985768.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242129644|gb|ACS83946.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech703]
          Length = 236

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H   D   + RE + L W S GKT  EIA+ILGI  +TV  +I +++RK        AI 
Sbjct: 166 HRSNDMLFSERENDILYWASMGKTYQEIALILGIKTSTVKFHIGNVVRKLGVTNAKHAIR 225

Query: 239 YAVRNNIV 246
             +  N++
Sbjct: 226 MGIEMNLI 233


>gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 307

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F LT RE E L WI++GK++ +I  ILG+S  TVN ++  I  K   + R+ A   A 
Sbjct: 242 QHFSLTQRESEVLLWIAKGKSNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKAA 301


>gi|107025997|ref|YP_623508.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692818|ref|YP_838351.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737931|ref|YP_001779191.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895371|gb|ABF78535.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116650818|gb|ABK11458.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
 gi|169820119|gb|ACA94701.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 239

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|300914706|ref|ZP_07132022.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X561]
 gi|307724060|ref|YP_003903811.1| LuxR family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320115614|ref|YP_004185773.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|300889641|gb|EFK84787.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X561]
 gi|307581121|gb|ADN54520.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X513]
 gi|319928705|gb|ADV79390.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 205

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  IS+G ++ EIA  L +S  TV N++ +I +K   K R+ A  Y ++N 
Sbjct: 141 DLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 200

Query: 245 IV 246
            +
Sbjct: 201 TI 202


>gi|259908860|ref|YP_002649216.1| Regulatory protein [Erwinia pyrifoliae Ep1/96]
 gi|224964482|emb|CAX55992.1| Regulatory protein [Erwinia pyrifoliae Ep1/96]
          Length = 240

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +L+ RE+E L W +EGKTS EI++IL IS NTVN +   + ++     ++   +YA 
Sbjct: 178 LDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQIASYAA 235


>gi|224368539|ref|YP_002602702.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691255|gb|ACN14538.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 217

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E LT ++EGK++ +IA IL IS  TV ++ ASIM++   +T +  I YA+R+ 
Sbjct: 154 LSPREEEVLTLLAEGKSNKKIADILCISTRTVEHHRASIMKRLDLRTLADLIKYAIRHG 212


>gi|148255164|ref|YP_001239749.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146407337|gb|ABQ35843.1| putative transcriptional regulatory protein, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 140

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F+LT RE + L  ++EG ++ EIA  LGIS +T   ++ S++ K     R+ A+A+A R 
Sbjct: 76  FQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDAVAHAARR 135

Query: 244 NIV 246
            I+
Sbjct: 136 GII 138


>gi|319650241|ref|ZP_08004387.1| YhcZ protein [Bacillus sp. 2_A_57_CT2]
 gi|317398072|gb|EFV78764.1| YhcZ protein [Bacillus sp. 2_A_57_CT2]
          Length = 215

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  I++GK++ EIA  L I+  TV  ++++++ K     R+ A  YAVR+ 
Sbjct: 151 ELTKRELEVLREIAKGKSNKEIASSLYITEKTVKTHVSNLLSKLELADRTQAALYAVRHG 210

Query: 245 I 245
           I
Sbjct: 211 I 211


>gi|261493914|ref|ZP_05990423.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496858|ref|ZP_05993227.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307475|gb|EEY08809.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310417|gb|EEY11611.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 583

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    + L+ RE+E LT IS G +++EIA  L IS+ TV+ +I +I  KT T++R+    
Sbjct: 78  HTDLPYGLSKREIELLTLISSGLSNEEIANELCISKRTVDKHIENIFAKTHTESRTLLAV 137

Query: 239 YAVRNNIV 246
           +A+  ++V
Sbjct: 138 FAITEHLV 145


>gi|260551305|ref|ZP_05825506.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624]
 gi|260405619|gb|EEW99110.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624]
          Length = 238

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L W +EGKTS EIA I+G++  TVN ++ + M+K     +  A   AV
Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQIIGVTERTVNFHLCNSMQKLNVNNKISAAIRAV 233


>gi|78061902|ref|YP_371810.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969787|gb|ABB11166.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 239

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|228994069|ref|ZP_04153970.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228765717|gb|EEM14370.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 189

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 35/61 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AIA 
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSSGTVRNYISDVLTKLNAKNRIEAIAI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|12620903|gb|AAG61131.1|AF330020_1 AHL receptor [Burkholderia cepacia]
          Length = 239

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|167037195|ref|YP_001664773.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040665|ref|YP_001663650.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter sp. X514]
 gi|166854905|gb|ABY93314.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X514]
 gi|166856029|gb|ABY94437.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
          Length = 208

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  IS+G ++ EIA  L +S  TV N++ +I +K   K R+ A  Y ++N 
Sbjct: 144 DLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 203

Query: 245 IV 246
            +
Sbjct: 204 TI 205


>gi|17989461|ref|NP_542094.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1
           str. 16M]
 gi|17985340|gb|AAL54358.1| transcriptional activator, luxr family [Brucella melitensis bv. 1
           str. 16M]
          Length = 235

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 166 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 225

Query: 246 V 246
           +
Sbjct: 226 I 226


>gi|319653424|ref|ZP_08007524.1| response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394908|gb|EFV75646.1| response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 210

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 42/62 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  +++GKT+ +IA  L I+  TV  ++++I+ K   + R+ A+ YA +++
Sbjct: 148 ELTSREMEILLLMTQGKTNQDIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAFKHS 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|313901723|ref|ZP_07835152.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468011|gb|EFR63496.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 222

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I+ GKT+ ++A  L IS  TV N+++ IM+K   + R+ A+ +A+R  +
Sbjct: 155 LSQRELEVLSRIARGKTTAQVARELFISPKTVRNHLSHIMQKLGVRDRTQAVLFALRVGL 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|291301198|ref|YP_003512476.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570418|gb|ADD43383.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 826

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + LT ++ G+ +  IAV LGI+R TV  +I + MRK   KTR+ A   A
Sbjct: 763 LTSREQQVLTMVAAGEPTRRIAVALGITRETVETHIRAGMRKLGAKTRTEAAVRA 817


>gi|254471852|ref|ZP_05085253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp.
           JE062]
 gi|211959054|gb|EEA94253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp.
           JE062]
          Length = 254

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F  T RE ECL W++ G+ + EIA IL +S  TV ++I    +K     R+ A+A A+
Sbjct: 190 FGFTPREHECLLWLTAGRANKEIAHILNLSEKTVEHHIKRACKKLRVTNRTHAVARAM 247


>gi|15889689|ref|NP_355370.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157595|gb|AAK88155.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 309

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS D      F LT RE E L WI++GK++ +I  ILG+S  TVN ++  I  K   + R
Sbjct: 236 KSDDHLLKSHFALTTRESEVLLWIAKGKSNRDIGDILGLSARTVNKHLEQIYVKLGVENR 295

Query: 234 SGAIAYAV 241
           + A   A 
Sbjct: 296 ASAAVKAA 303


>gi|306837362|ref|ZP_07470241.1| regulatory protein LuxR [Brucella sp. NF 2653]
 gi|306407554|gb|EFM63754.1| regulatory protein LuxR [Brucella sp. NF 2653]
          Length = 235

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 166 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 225

Query: 246 V 246
           +
Sbjct: 226 I 226


>gi|302543091|ref|ZP_07295433.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460709|gb|EFL23802.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 219

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  I++G+++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA R
Sbjct: 155 DNPLTPRELEVLRLIADGRSNSEIAAALQISQETVKTFVSRILTKLDLRDRVQAVVYAYR 214

Query: 243 NNI 245
             +
Sbjct: 215 QGL 217


>gi|13474692|ref|NP_106261.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025447|dbj|BAB52047.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 243

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R 
Sbjct: 180 IELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRR 239

Query: 244 NIV 246
             +
Sbjct: 240 GYI 242


>gi|218513582|ref|ZP_03510422.1| LuxR family transcriptional regulator [Rhizobium etli 8C-3]
          Length = 65

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E + W++ GKT+ EI  IL +S  TVN +IA+   K      +  +A A+RN I
Sbjct: 4   VTPREREIIGWMAAGKTAAEIGAILAVSPITVNTHIANAKAKLGVFKETALVAEALRNGI 63

Query: 246 V 246
           +
Sbjct: 64  I 64


>gi|171322367|ref|ZP_02911189.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171092309|gb|EDT37680.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 239

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIAAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|254254249|ref|ZP_04947566.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa
           AUO158]
 gi|12620909|gb|AAG61134.1|AF330023_1 AHL receptor [Burkholderia cepacia]
 gi|124898894|gb|EAY70737.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa
           AUO158]
          Length = 239

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|300814540|ref|ZP_07094796.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300511367|gb|EFK38611.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 208

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +LT RE++ L  ++ G  +DEIA  LGIS NTV  +IA ++ KT  KTR+
Sbjct: 143 QLTPREIQVLRLLTTGVGNDEIASKLGISENTVKTHIAHLLSKTGFKTRT 192


>gi|119896947|ref|YP_932160.1| LuxR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119669360|emb|CAL93273.1| putative transcriptional regulator, LuxR family [Azoarcus sp. BH72]
          Length = 318

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F LT RE E L W++ GKT+ +I  ILG S  TV+ ++  +  K   +TR+ A + A+
Sbjct: 251 FRLTTREAEVLYWVTRGKTNRDIGDILGSSPRTVHKHLEHVFEKLGVETRTAAASMAL 308


>gi|116071519|ref|ZP_01468787.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116065142|gb|EAU70900.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 92

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 42/71 (59%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D     D  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MSSVDTTDPLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKN 60

Query: 233 RSGAIAYAVRN 243
           R   + +++ N
Sbjct: 61  RVALLNWSMDN 71


>gi|73749035|ref|YP_308274.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|147669801|ref|YP_001214619.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|73660751|emb|CAI83358.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
 gi|146270749|gb|ABQ17741.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 225

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 180 WGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            GKD       LT RE + LT I+ G T+ +IA  L IS  T+ N++++I+RK     R+
Sbjct: 152 LGKDASSFVAPLTNREKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKLNANDRA 211

Query: 235 GAIAYAVR 242
            A+  A+R
Sbjct: 212 HAVVVAIR 219


>gi|332526102|ref|ZP_08402240.1| response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332109945|gb|EGJ10573.1| response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 245

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT++S+G T  EIA ++GI   TVN++I SI +K    +R+ A   A +  +
Sbjct: 185 LTPRESEVLTYLSKGFTIKEIASLMGIKWFTVNDHIKSIYKKLNVSSRAEAAVLASKQGL 244

Query: 246 V 246
           V
Sbjct: 245 V 245


>gi|329941415|ref|ZP_08290694.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299946|gb|EGG43845.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 226

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT RE+E L  I++G ++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA 
Sbjct: 161 EDIPLTPRELEVLRLIADGLSNSEIAATLVISQETVKTFVSRILTKLNLRDRVQAVVYAF 220

Query: 242 RNNI 245
           R+ +
Sbjct: 221 RHGL 224


>gi|313895153|ref|ZP_07828710.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529859|ref|ZP_08030936.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas artemidis F0399]
 gi|312976048|gb|EFR41506.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137877|gb|EFW29782.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas artemidis F0399]
          Length = 223

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G ++ +I   LG+S  TV N++ SI  K     R+ A+ Y ++N I
Sbjct: 160 LTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSIFHKLKVNDRTQALVYVLKNKI 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|238027274|ref|YP_002911505.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237876468|gb|ACR28801.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 237

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A 
Sbjct: 176 LTDREVEVLKWAADGKTSGEISTILRISVDTVNFHVKNAVAKLKTVNKTSAVVRAA 231


>gi|14586756|gb|AAK70350.1|AF333005_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           stabilis]
          Length = 239

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|16332248|ref|NP_442976.1| response regulator like-protein [Synechocystis sp. PCC 6803]
 gi|1653878|dbj|BAA18788.1| response regulator like protein [Synechocystis sp. PCC 6803]
          Length = 228

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    +  ELT REV  L  ++EGKT+ EI   L ++ +TV  Y+ +IMRK   + R+ A
Sbjct: 158 DYRKSQKDELTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSA 217

Query: 237 IAYAVRNN 244
               +R  
Sbjct: 218 AIAGLREG 225


>gi|163801312|ref|ZP_02195211.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
 gi|159174801|gb|EDP59601.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
          Length = 217

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 165 LAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L AY AN+  +  ++    + ELT RE + LT + +G ++ +IA  L +S +TV +++ S
Sbjct: 136 LVAYLANLNHTVTELDTQLEIELTRRETQVLTALCQGGSNLDIADSLFVSEHTVKSHLYS 195

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           I RK   K R  AIA+A RN
Sbjct: 196 IFRKLEVKNRMQAIAWAKRN 215


>gi|116253485|ref|YP_769323.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258133|emb|CAK09234.1| putative LuxR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 305

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 12/112 (10%)

Query: 137 VARIRIGLMLLFPKGRIILR-DRLWEIG-------LLAAYQANMFKSYDVHWGKDFELTG 188
           VA +R G++ +   G+  L+   L  IG       L AA Q    +S D    + F LT 
Sbjct: 191 VAAVRDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAASQ----RSDDEVLRQRFSLTQ 246

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           RE E L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 247 RESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|331092883|ref|ZP_04586362.2| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331125377|ref|ZP_04592751.2| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020753|gb|EGI00810.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027159|gb|EGI07214.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 235

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W   GKT+ EI+ ILG S  TVN +IA+  RK     R  A+  A+    
Sbjct: 173 LTMRETEVLKWSGAGKTTWEISRILGCSERTVNFHIANASRKLGASNRLQAVGMALAQEF 232

Query: 246 V 246
           +
Sbjct: 233 I 233


>gi|229000138|ref|ZP_04159708.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229007659|ref|ZP_04165252.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228753610|gb|EEM03055.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228759675|gb|EEM08651.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 189

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 35/61 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AIA 
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSSGTVRNYISDVLTKLNAKNRIEAIAI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|254448276|ref|ZP_05061738.1| Two Component Transcriptional Regulator, LuxR family [gamma
           proteobacterium HTCC5015]
 gi|198262143|gb|EDY86426.1| Two Component Transcriptional Regulator, LuxR family [gamma
           proteobacterium HTCC5015]
          Length = 208

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R +L   L+   L A  Q   ++S DV      EL+GR+++ L  +++G T+ EIA +L 
Sbjct: 114 RRVLAGELYHPALEATAQHPSWESDDVDRAAFSELSGRQMQVLAEMAKGSTNKEIAAVLN 173

Query: 212 ISRNTVNNYIASI 224
           IS +TV  +IA +
Sbjct: 174 ISEHTVKTHIAKL 186


>gi|315506070|ref|YP_004084957.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315412689|gb|ADU10806.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 603

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  I++G ++ EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R
Sbjct: 539 DVGLTPRELEVLRLIADGLSNSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYR 598

Query: 243 NNIV 246
             +V
Sbjct: 599 TGLV 602


>gi|209809715|ref|YP_002265254.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
 gi|21311436|gb|AAM46717.1|AF452135_2 LuxR1 [Aliivibrio salmonicida]
 gi|208011278|emb|CAQ81719.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
          Length = 248

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE ECL W  EGK+S EI++ILG +  TV  ++ +   K  T  R  +++ A+
Sbjct: 182 DLTKREKECLAWACEGKSSWEISIILGCTERTVAFHLTNSQTKLGTTNRCQSVSKAI 238


>gi|85708570|ref|ZP_01039636.1| two-component transcriptional regulator, LuxR family protein
           [Erythrobacter sp. NAP1]
 gi|85690104|gb|EAQ30107.1| two-component transcriptional regulator, LuxR family protein
           [Erythrobacter sp. NAP1]
          Length = 236

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE LTW + GK+   IA IL IS +T   Y   I  K     R GA+  A+R  +
Sbjct: 174 LSEREVEVLTWAARGKSLSAIATILDISPDTAKTYSKRIYAKLDVSDRVGAVVKALRMGL 233

Query: 246 V 246
           V
Sbjct: 234 V 234


>gi|166850622|gb|ABY91283.1| transcriptional regulator [Mesorhizobium huakuii]
          Length = 243

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R 
Sbjct: 180 IELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRR 239

Query: 244 NIV 246
             +
Sbjct: 240 GYI 242


>gi|149180154|ref|ZP_01858659.1| DNA-binding response regulator [Bacillus sp. SG-1]
 gi|148852346|gb|EDL66491.1| DNA-binding response regulator [Bacillus sp. SG-1]
          Length = 216

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL  +Q N  +  D     D  LT RE E L  + EG ++ EI   L +S  TV  ++++
Sbjct: 133 LLTFHQQNQRQDRD-----DNSLTEREREVLGCLVEGLSNKEIGKRLYVSDKTVKIHVSN 187

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I +K   K+RS  + YAV+N +V
Sbjct: 188 IFKKLNVKSRSQVVIYAVQNKLV 210


>gi|326334186|ref|ZP_08200409.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae
           bacterium Broad-1]
 gi|325947977|gb|EGD40094.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae
           bacterium Broad-1]
          Length = 212

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +++G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  
Sbjct: 148 KLTDRELEVLGLVAKGLNNREIAKRLFISENTVKNHVRNILEKLQAHSRMEAVMYAVRQK 207

Query: 245 IV 246
           ++
Sbjct: 208 LL 209


>gi|311032377|ref|ZP_07710467.1| two-component response regulator LiaR [Bacillus sp. m3-13]
          Length = 210

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 42/62 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  +++GKT+ EIA  L I+  TV  ++++I+ K   + R+ A+ YA +++
Sbjct: 148 ELTNREMEILLLMTQGKTNQEIADELFIALKTVKVHVSNILAKLQVQDRTQAVIYAFKHS 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|256395900|ref|YP_003117464.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362126|gb|ACU75623.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 232

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  +++G+++  I   +G+S  TV +++A I RK  T  R+G +A A+R  
Sbjct: 170 DLSAREIEVLRLVADGRSNKAIGQAMGLSALTVKSHLARIARKLGTGDRAGMVAVALRGG 229

Query: 245 IV 246
            +
Sbjct: 230 TI 231


>gi|167584437|ref|ZP_02376825.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 239

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILNISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|157683240|gb|ABV64383.1| response regulator [Anabaena sp. L-31]
          Length = 228

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N+ KS       D  LTGRE+E L+ +++GKT+ EIA  L I+  TV  ++ +I+ K   
Sbjct: 152 NLIKS-------DHPLTGRELEILSLLAQGKTNQEIATALYITPGTVRVHVHAILHKLDV 204

Query: 231 KTRSGAIAYAVRNNIV 246
             R  A+  A++  ++
Sbjct: 205 SDRHQAVVLALQKRLI 220


>gi|332995574|gb|AEF05629.1| two-component response regulator [Alteromonas sp. SN2]
          Length = 297

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  +T RE E L WIS GKTS EI+ IL IS  T N ++  I +K     ++ A A A+
Sbjct: 233 ENLPITKRESEVLYWISFGKTSWEISQILDISPRTANKHLEQIYKKLGVDNKTSAAAIAL 292

Query: 242 R 242
           R
Sbjct: 293 R 293


>gi|238927983|ref|ZP_04659743.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|238883943|gb|EEQ47581.1| response regulator [Selenomonas flueggei ATCC 43531]
          Length = 223

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++PK    L +RL+    ++     M K  +D   G+   LT RE++ L  I++G ++ +
Sbjct: 126 VYPK----LAERLFGTSSISGDVGRMAKEIWDESRGE--RLTPREMDVLGCIAKGLSNQD 179

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   LG+S  TV N++ S+  K     R+ A+ Y ++N IV
Sbjct: 180 IGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYVLKNKIV 220


>gi|319793534|ref|YP_004155174.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315595997|gb|ADU37063.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 255

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+D  LT RE E L +++ G  S EI   LGI+  TVN +I SI +K    +R+ A+ +A
Sbjct: 190 GRDATLTPRESEILRFVACGYVSAEIGERLGITWQTVNVHIKSIYKKLHVHSRAQAVNFA 249

Query: 241 VRNNIV 246
           V   ++
Sbjct: 250 VHTGLI 255


>gi|253998423|ref|YP_003050486.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200498|ref|YP_004039156.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985102|gb|ACT49959.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312439814|gb|ADQ83920.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 314

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           F+LT RE E L W  +GKT+ +I  ILG S  T+N ++  +  K   +TR+ A A A
Sbjct: 252 FKLTRRESEVLYWAMQGKTNRDIGDILGTSPRTINKHLEHVFTKLGVETRTAASALA 308


>gi|160894687|ref|ZP_02075462.1| hypothetical protein CLOL250_02238 [Clostridium sp. L2-50]
 gi|156863621|gb|EDO57052.1| hypothetical protein CLOL250_02238 [Clostridium sp. L2-50]
          Length = 123

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            K ++LT RE E L+ I     +DEIA  LGIS NT+  ++ +I RKT T ++
Sbjct: 64  AKGYDLTPRETEILSLIFSFANNDEIAATLGISENTIQKHLQNIFRKTGTSSK 116


>gi|302035966|ref|YP_003796288.1| putative LuxR family transcriptional regulator [Candidatus
           Nitrospira defluvii]
 gi|300604030|emb|CBK40362.1| putative Transcriptional regulator, LuxR family [Candidatus
           Nitrospira defluvii]
          Length = 265

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE E L W++ GKT+ EI+VIL +S NTV  ++ ++ +K   + R  AIAY
Sbjct: 184 LSKREEEILRWVAAGKTNWEISVILKVSLNTVKFHLKNVFQKIGVENRWSAIAY 237


>gi|332685604|ref|YP_004455378.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
 gi|332369613|dbj|BAK20569.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
          Length = 201

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L  + +G  + +IA  L +S  TV NYI++I+ KT TK+R  AI  A
Sbjct: 141 LTDREIEILNLLKKGANTKQIAENLFLSNGTVRNYISAILNKTGTKSRIEAINLA 195


>gi|294498204|ref|YP_003561904.1| two-component response regulator LiaR [Bacillus megaterium QM
           B1551]
 gi|294348141|gb|ADE68470.1| two-component response regulator LiaR [Bacillus megaterium QM
           B1551]
          Length = 208

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 41/62 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  +++GKT+ EIA  L I+  TV  ++++++ K   + R+ A+ YA ++ 
Sbjct: 146 ELTAREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHK 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|148560233|ref|YP_001258220.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148371490|gb|ABQ61469.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella ovis ATCC 25840]
          Length = 235

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVKAVAKA 229


>gi|254690492|ref|ZP_05153746.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 6 str. 870]
          Length = 235

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 229


>gi|264677722|ref|YP_003277628.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|299530281|ref|ZP_07043706.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|262208234|gb|ACY32332.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|298721652|gb|EFI62584.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 253

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+ RE E L  ++ G TS EI V L IS  TVN +I +I RK   +TR+ A+ +A
Sbjct: 188 GMSDRLSSRECEVLRMVASGNTSAEIGVQLEISTMTVNTHIKNIYRKLQVRTRAQAVRFA 247


>gi|167566108|ref|ZP_02359024.1| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Burkholderia
           oklahomensis EO147]
          Length = 236

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R+ L   L  + L  AY+  M  S D       +L+ REVE L W ++GKT+DEI  IL 
Sbjct: 148 RMCLLADLTHMVLSDAYRKEMTASAD-------KLSAREVEILRWHADGKTADEIGRILS 200

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           IS +TV  +  + + K     ++ A+A A 
Sbjct: 201 ISIDTVKFHTKNAVVKLGASNKTAAVARAA 230


>gi|94263624|ref|ZP_01287434.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93456044|gb|EAT06195.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           + LT RE E L W+SEGK++ EI VI  IS NTV +++  +M K     R
Sbjct: 153 YGLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNR 202


>gi|86356681|ref|YP_468573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280783|gb|ABC89846.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 86

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E + W+++GKT+ EI  ILGIS  TVN +I++   K      +  +A A+RN I
Sbjct: 25  VTPREREIIGWMAQGKTAAEIGTILGISPITVNTHISNAKAKLGVFKETALVAAALRNGI 84

Query: 246 V 246
           +
Sbjct: 85  I 85


>gi|326408213|gb|ADZ65278.1| Transcriptional activator, LUXR family [Brucella melitensis M28]
 gi|326537928|gb|ADZ86143.1| Transcriptional activator protein solR [Brucella melitensis M5-90]
          Length = 171

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 108 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 165


>gi|313887441|ref|ZP_07821130.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923083|gb|EFR33903.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 201

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S +    K   L+ RE E +TW++ G T+ EIA +L +S +TV  +  +I  K    + 
Sbjct: 121 ESLESEEAKQTPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSP 180

Query: 234 SGAIAYAVRNNIV 246
           SG   YA+ NN++
Sbjct: 181 SGLTIYALMNNLI 193


>gi|294851589|ref|ZP_06792262.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|294820178|gb|EFG37177.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 238

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232


>gi|260461917|ref|ZP_05810162.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259032164|gb|EEW33430.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 243

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R  
Sbjct: 181 ELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRG 240

Query: 245 IV 246
            +
Sbjct: 241 YI 242


>gi|329940650|ref|ZP_08289931.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329300711|gb|EGG44608.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 287

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  L+ REV+ L W++ G T+  +A  LG+   TV  Y+ S MRK   +TR  A+  A
Sbjct: 221 GADVGLSPREVDVLAWVAVGATNAGVAERLGVRPETVKAYLRSAMRKLGARTRGEAVVAA 280


>gi|301059949|ref|ZP_07200832.1| transcriptional regulator, LuxR family [delta proteobacterium
           NaphS2]
 gi|300445958|gb|EFK09840.1| transcriptional regulator, LuxR family [delta proteobacterium
           NaphS2]
          Length = 294

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG +++EI+ +L IS +TV ++I  I  K     R+ A  +A R+N+
Sbjct: 234 LTPRELEVLCILAEGTSNNEISHMLNISPHTVKSHIIHIFNKLGVNDRTQAAVWAARHNL 293

Query: 246 V 246
           +
Sbjct: 294 I 294


>gi|292670350|ref|ZP_06603776.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541]
 gi|292648081|gb|EFF66053.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541]
          Length = 223

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G ++ +I   LG+S  TV N++ SI  K     R+ A+ Y ++N I
Sbjct: 160 LTPREMDVLGCIAKGFSNQDIGKALGLSEKTVKNHLTSIFHKLKVNDRTQALVYVLKNKI 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|254718404|ref|ZP_05180215.1| Transcriptional activator, LUXR family protein [Brucella sp. 83/13]
 gi|306840172|ref|ZP_07472955.1| LuxR family transcriptional regulator [Brucella sp. NF 2653]
 gi|306844457|ref|ZP_07477047.1| LuxR family transcriptional regulator [Brucella sp. BO1]
 gi|306275270|gb|EFM57020.1| LuxR family transcriptional regulator [Brucella sp. BO1]
 gi|306404737|gb|EFM61033.1| LuxR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 235

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 229


>gi|167464268|ref|ZP_02329357.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383996|ref|ZP_08057726.1| two-component response regulator YfiJ-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151473|gb|EFX44660.1| two-component response regulator YfiJ-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 225

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  +S+G  + +IA+ L IS NTV N++ +I+ K   + R    AYAV++ +
Sbjct: 158 LTARETEIVAHVSKGYNNKQIALRLSISENTVKNHMKNILDKLNLENRVQLTAYAVKHQL 217


>gi|296331212|ref|ZP_06873685.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675910|ref|YP_003867582.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151663|gb|EFG92539.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414154|gb|ADM39273.1| two-component response regulator [liaS] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 211

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++
Sbjct: 150 LTKRELEILCLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|308175040|ref|YP_003921745.1| transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607904|emb|CBI44275.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328555009|gb|AEB25501.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           TA208]
 gi|328913364|gb|AEB64960.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           LL3]
          Length = 210

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++
Sbjct: 149 LTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|306842528|ref|ZP_07475179.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2]
 gi|306287384|gb|EFM58864.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2]
          Length = 171

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 108 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 165


>gi|289628275|ref|ZP_06461229.1| putative LuxR-family regulatory protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 262

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+ECL W S GKTS EI+ IL  S  TV+ ++ +  RK  + +R  A+  A    
Sbjct: 174 DLTPRELECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARG 233

Query: 245 IV 246
           ++
Sbjct: 234 LL 235


>gi|256368654|ref|YP_003106160.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella microti CCM 4915]
 gi|255998812|gb|ACU47211.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella microti CCM 4915]
          Length = 235

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 229


>gi|23501101|ref|NP_697228.1| LuxR family transcriptional regulator [Brucella suis 1330]
 gi|62289164|ref|YP_220957.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82699104|ref|YP_413678.1| transcriptional regulator LuxR family protein [Brucella melitensis
           biovar Abortus 2308]
 gi|163842459|ref|YP_001626863.1| transcriptional activator protein solR [Brucella suis ATCC 23445]
 gi|254694980|ref|ZP_05156808.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|254696612|ref|ZP_05158440.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254700994|ref|ZP_05162822.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 5
           str. 513]
 gi|254705366|ref|ZP_05167194.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 3
           str. 686]
 gi|254707120|ref|ZP_05168948.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis M163/99/10]
 gi|254709336|ref|ZP_05171147.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis B2/94]
 gi|254713241|ref|ZP_05175052.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M644/93/1]
 gi|254716405|ref|ZP_05178216.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M13/05/1]
 gi|254731525|ref|ZP_05190103.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|256030859|ref|ZP_05444473.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis M292/94/1]
 gi|256045980|ref|ZP_05448852.1| Transcriptional activator, LUXR family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256060329|ref|ZP_05450502.1| Transcriptional activator, LUXR family protein [Brucella neotomae
           5K33]
 gi|256112692|ref|ZP_05453613.1| Transcriptional activator, LUXR family protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|256158890|ref|ZP_05456740.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M490/95/1]
 gi|256254264|ref|ZP_05459800.1| Transcriptional activator, LUXR family protein [Brucella ceti
           B1/94]
 gi|256258748|ref|ZP_05464284.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|260169762|ref|ZP_05756573.1| Transcriptional activator, LUXR family protein [Brucella sp. F5/99]
 gi|23346971|gb|AAN29143.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella suis 1330]
 gi|62195296|gb|AAX73596.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella abortus bv. 1 str. 9-941]
 gi|82615205|emb|CAJ10146.1| Bacterial regulatory protein, LuxR family:Autoinducer binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|163673182|gb|ABY37293.1| Transcriptional activator protein solR [Brucella suis ATCC 23445]
          Length = 235

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 229


>gi|260756046|ref|ZP_05868394.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           6 str. 870]
 gi|260676154|gb|EEX62975.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           6 str. 870]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232


>gi|312112563|ref|YP_003990879.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217664|gb|ADP76268.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 185

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 42/61 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E++ L +ISE +T+ EI+ +L IS+ TV ++++SI+RK    +R GA+  A++  I
Sbjct: 124 LTKVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRVGAVVKAMKLGI 183

Query: 246 V 246
           +
Sbjct: 184 L 184


>gi|94266341|ref|ZP_01290042.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93453055|gb|EAT03537.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           + LT RE E L W+SEGK++ EI VI  IS NTV +++  +M K     R
Sbjct: 153 YGLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNR 202


>gi|302542744|ref|ZP_07295086.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460362|gb|EFL23455.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 201

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 37/55 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   ++G T+ E+A  LG+S+ TV NY+++ ++KTA + R+ A+  A
Sbjct: 141 LTAREREVLGASADGSTNAELARALGLSQGTVRNYLSTAIQKTAARNRADAVRIA 195


>gi|170700319|ref|ZP_02891331.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134753|gb|EDT03069.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|172063602|ref|YP_001811253.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996119|gb|ACB67037.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|89055684|ref|YP_511135.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88865233|gb|ABD56110.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 243

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           GR I   +L   GL+A  + ++      H  +   L+ RE ECL W+S G    +IA  L
Sbjct: 148 GREIAAMQLQLAGLIAFERLSVLTRQANHAHR--RLSPRERECLQWLSAGLRVTQIAHRL 205

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            IS + V+ YI +  RK   +TR  A+A+A+
Sbjct: 206 DISESAVHLYIKNARRKFGARTREQAVAHAI 236


>gi|330941017|gb|EGH43939.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 262

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+ECL W S GKTS EI+ IL  S  TV+ ++ +  RK  + +R  A+  A    
Sbjct: 174 DLTPRELECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARG 233

Query: 245 IV 246
           ++
Sbjct: 234 LL 235


>gi|328552560|gb|AEB23052.1| two-component response regulator (YhcY) [Bacillus amyloliquefaciens
           TA208]
 gi|328910960|gb|AEB62556.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 214

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D +  K ++LT RE + L  I++GK++ EIA  L IS  TV  ++++++ K     R+ A
Sbjct: 140 DQNKEKYYQLTPREKDVLQEIAKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQA 199

Query: 237 IAYAVRNNI 245
             YAV+ NI
Sbjct: 200 ALYAVKYNI 208


>gi|265983368|ref|ZP_06096103.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13]
 gi|264661960|gb|EEZ32221.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232


>gi|253573655|ref|ZP_04850998.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847183|gb|EES75188.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 215

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L W+++G T+ EIA +L IS  TV N++ +I++K   + R     YA
Sbjct: 146 GEQPPLTAREREILGWVAQGMTNREIAGVLHISDQTVKNHLKNILQKLHLENRVQLTRYA 205

Query: 241 VRNN 244
           +   
Sbjct: 206 LEQG 209


>gi|163800212|ref|ZP_02194113.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
 gi|159175655|gb|EDP60449.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
          Length = 216

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL  Y+    +S  +    + ELT RE++ L  + EG ++ EIA  L IS +T+ +++ +
Sbjct: 137 LLTYYKGKELQSM-IEPATEVELTRREIQVLKMLKEGGSNIEIADSLFISEHTIKSHLYN 195

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           I RK   K R+ A  +A RN
Sbjct: 196 IFRKIEVKNRTQATRWAKRN 215


>gi|94269857|ref|ZP_01291582.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93451041|gb|EAT02000.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           + LT RE E L W+SEGK++ EI VI  IS NTV +++  +M K     R
Sbjct: 153 YGLTPREREILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNR 202


>gi|226311198|ref|YP_002771092.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226094146|dbj|BAH42588.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 228

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 165 LAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           L+AY + + K  + D    K  +L+ REVE +  +S G++  E+A  +GIS  TV +YI 
Sbjct: 144 LSAYCSMLGKVLATDSLRPKTVKLSRREVEVMQRMSWGESVKEMASWMGISEFTVQDYIK 203

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S ++K   + R+  +A A+R  I+
Sbjct: 204 SALKKLGVQNRAQGVADAIRQRII 227


>gi|332299624|ref|YP_004441545.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176687|gb|AEE12377.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 201

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S +    K   L+ RE E +TW++ G T+ EIA +L +S +TV  +  +I  K    + 
Sbjct: 121 ESLESEEAKQTPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSP 180

Query: 234 SGAIAYAVRNNIV 246
           SG   YA+ NN++
Sbjct: 181 SGLTIYALMNNLI 193


>gi|322437503|ref|YP_004219593.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165396|gb|ADW71099.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 207

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++G+++ EIA  LGI+  TV  +++S++ K   + R+ A  YA++  
Sbjct: 143 DLTPRESEVLVCITQGRSNQEIADELGIAEKTVRIHVSSLLDKMGARDRTQATIYALQRG 202

Query: 245 IV 246
           +V
Sbjct: 203 LV 204


>gi|296268760|ref|YP_003651392.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091547|gb|ADG87499.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 234

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 171 LTEREMEVLRLVAKGMHNREIAKALFISENTVKNHVRNILDKLQLHSRMEAVVYAVRERL 230

Query: 246 V 246
           +
Sbjct: 231 L 231


>gi|206601912|gb|EDZ38394.1| Putative two component transcriptional regulator, LuxR family
           [Leptospirillum sp. Group II '5-way CG']
          Length = 211

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H   D  L+ RE E L  +S+G ++ EI  I GIS +TV  +I SI+ K +  TR+ A  
Sbjct: 144 HPENDNPLSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAV 203

Query: 239 YAVRNNIV 246
            A++  ++
Sbjct: 204 KAIKKGLI 211


>gi|17988041|ref|NP_540675.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1
           str. 16M]
 gi|161618178|ref|YP_001592065.1| transcriptional activator protein solR [Brucella canis ATCC 23365]
 gi|189023440|ref|YP_001934208.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225626726|ref|ZP_03784765.1| Transcriptional activator protein solR [Brucella ceti str. Cudo]
 gi|237814657|ref|ZP_04593655.1| Transcriptional activator protein solR [Brucella abortus str. 2308
           A]
 gi|260546462|ref|ZP_05822202.1| transcriptional activator [Brucella abortus NCTC 8038]
 gi|260563261|ref|ZP_05833747.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M]
 gi|260567174|ref|ZP_05837644.1| transcriptional activator [Brucella suis bv. 4 str. 40]
 gi|260759270|ref|ZP_05871618.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           4 str. 292]
 gi|260760992|ref|ZP_05873335.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260885067|ref|ZP_05896681.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           9 str. C68]
 gi|261215322|ref|ZP_05929603.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           3 str. Tulya]
 gi|261218189|ref|ZP_05932470.1| autoinducer-binding domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261221416|ref|ZP_05935697.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94]
 gi|261314598|ref|ZP_05953795.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261316846|ref|ZP_05956043.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261320963|ref|ZP_05960160.1| autoinducer-binding domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261324304|ref|ZP_05963501.1| autoinducer-binding domain-containing protein [Brucella neotomae
           5K33]
 gi|261751515|ref|ZP_05995224.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5
           str. 513]
 gi|261756080|ref|ZP_05999789.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3
           str. 686]
 gi|261759304|ref|ZP_06003013.1| transcriptional activator [Brucella sp. F5/99]
 gi|265987917|ref|ZP_06100474.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|265992391|ref|ZP_06104948.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265994134|ref|ZP_06106691.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|265997378|ref|ZP_06109935.1| autoinducer-binding domain-containing protein [Brucella ceti
           M490/95/1]
 gi|297247581|ref|ZP_06931299.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
 gi|17983788|gb|AAL52939.1| transcriptional activator, luxr family [Brucella melitensis bv. 1
           str. 16M]
 gi|161334989|gb|ABX61294.1| Transcriptional activator protein solR [Brucella canis ATCC 23365]
 gi|189019012|gb|ACD71734.1| Transcriptional activator, LUXR family [Brucella abortus S19]
 gi|225618383|gb|EEH15426.1| Transcriptional activator protein solR [Brucella ceti str. Cudo]
 gi|237789494|gb|EEP63704.1| Transcriptional activator protein solR [Brucella abortus str. 2308
           A]
 gi|260096569|gb|EEW80445.1| transcriptional activator [Brucella abortus NCTC 8038]
 gi|260153277|gb|EEW88369.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M]
 gi|260156692|gb|EEW91772.1| transcriptional activator [Brucella suis bv. 4 str. 40]
 gi|260669588|gb|EEX56528.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           4 str. 292]
 gi|260671424|gb|EEX58245.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260874595|gb|EEX81664.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           9 str. C68]
 gi|260916929|gb|EEX83790.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           3 str. Tulya]
 gi|260920000|gb|EEX86653.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94]
 gi|260923278|gb|EEX89846.1| autoinducer-binding domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261293653|gb|EEX97149.1| autoinducer-binding domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261296069|gb|EEX99565.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261300284|gb|EEY03781.1| autoinducer-binding domain-containing protein [Brucella neotomae
           5K33]
 gi|261303624|gb|EEY07121.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261739288|gb|EEY27284.1| transcriptional activator [Brucella sp. F5/99]
 gi|261741268|gb|EEY29194.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5
           str. 513]
 gi|261745833|gb|EEY33759.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3
           str. 686]
 gi|262551846|gb|EEZ07836.1| autoinducer-binding domain-containing protein [Brucella ceti
           M490/95/1]
 gi|262765115|gb|EEZ11036.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|263003457|gb|EEZ15750.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|264660114|gb|EEZ30375.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|297174750|gb|EFH34097.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232


>gi|225851721|ref|YP_002731954.1| transcriptional activator protein solR [Brucella melitensis ATCC
           23457]
 gi|265999658|ref|ZP_06111771.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9]
 gi|225640086|gb|ACN99999.1| Transcriptional activator protein solR [Brucella melitensis ATCC
           23457]
 gi|263095176|gb|EEZ18845.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232


>gi|156976380|ref|YP_001447286.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116]
 gi|156527974|gb|ABU73059.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116]
          Length = 218

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y      +Y +    + ELT REV+ L  + +G ++ EIA  L IS +T+ +++ +I
Sbjct: 139 LLTYYKGKESNYIIEPAIEVELTRREVQVLQMLKDGGSNMEIADSLFISEHTIKSHLYNI 198

Query: 225 MRKTATKTRSGAIAYAVRN 243
            RK   K R+ A ++A RN
Sbjct: 199 FRKIEVKNRTQATSWAKRN 217


>gi|163761091|ref|ZP_02168168.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162281642|gb|EDQ31936.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 260

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E   R+   L+  SEG TS +IAV L IS +TVN  +AS++R+     R   IA A+R  
Sbjct: 198 EFDARDAAILSLTSEGLTSQQIAVELKISEHTVNANVASMIRRLGVLNRPQLIATAIRKG 257

Query: 245 IV 246
           ++
Sbjct: 258 LI 259


>gi|311896318|dbj|BAJ28726.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 241

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 165 LAAYQANMFKSYDVHWGKDFEL------TGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +AA     FKS       D EL      T RE+E L  ++ G  + EIA  L IS NTV 
Sbjct: 151 MAAKLLTEFKSMIQRRSDDRELLPAPRLTDRELEVLKLVATGMNNREIAKELFISENTVK 210

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 211 NHVRNILEKLQLHSRMEAVVYAMREKIL 238


>gi|262203353|ref|YP_003274561.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262086700|gb|ACY22668.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  ++ G+T+ EIA  LGIS  TV ++I  I  K   + R+ AI YA  ++
Sbjct: 162 ELTERETDVLRLVARGRTNAEIAAGLGISEVTVKSHINHIFTKLDLRDRAAAIVYAFDHS 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|154687422|ref|YP_001422583.1| YvqC [Bacillus amyloliquefaciens FZB42]
 gi|154353273|gb|ABS75352.1| YvqC [Bacillus amyloliquefaciens FZB42]
          Length = 210

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++
Sbjct: 149 LTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|304438628|ref|ZP_07398567.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304368466|gb|EFM22152.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 233

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++PK    L +RL+    ++     M K  +D   G+   LT RE++ L  I++G ++ +
Sbjct: 136 VYPK----LAERLFGTPAISGDVGRMAKEIWDESRGE--RLTPREMDVLGCIAKGLSNQD 189

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   LG+S  TV N++ S+  K     R+ A+ Y ++N IV
Sbjct: 190 IGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYVLKNKIV 230


>gi|296159892|ref|ZP_06842713.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295889875|gb|EFG69672.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 364

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE E L W+S GKT+ +I  ILG++  TVN ++  +  K   +TR
Sbjct: 301 FSLTAREAEVLLWLSRGKTNRDIGDILGMAPRTVNKHLEHVFGKLHVETR 350


>gi|295695123|ref|YP_003588361.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295410725|gb|ADG05217.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 216

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  I+ G+++ EIA  L IS NTV N++ +IM K   K R+   A AVR 
Sbjct: 153 LTPREREILGLIARGRSNREIAQALTISENTVKNHLKNIMAKLDVKNRAQLAALAVRG 210


>gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040370|gb|ACT57166.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 235

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE  CL    +G TS+EIA  LG+S +TVN Y+ S   K     R  AIA A+R
Sbjct: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230


>gi|146340687|ref|YP_001205735.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146193493|emb|CAL77509.1| putative transcriptional regulatory protein, LuxR family
           [Bradyrhizobium sp. ORS278]
          Length = 133

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 180 WGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            G+D   F+LT RE + L  ++EG ++ EIA  LGIS +T   ++ S++ K     R+ A
Sbjct: 62  HGRDSDAFQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDA 121

Query: 237 IAYAVRNNIV 246
           +A+A R  I+
Sbjct: 122 VAHAARRGII 131


>gi|161520519|ref|YP_001583946.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353291|ref|YP_001948918.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221209754|ref|ZP_03582735.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           multivorans CGD1]
 gi|160344569|gb|ABX17654.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337313|dbj|BAG46382.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221170442|gb|EEE02908.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           multivorans CGD1]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|218674106|ref|ZP_03523775.1| two component transcriptional regulator, LuxR family protein
           [Rhizobium etli GR56]
          Length = 305

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S D    + F LT RE E L WI++GK + +I  ILG+S  TVN ++  I  K   + R
Sbjct: 232 RSDDEALRQRFSLTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENR 291

Query: 234 SGAIAYA 240
           + A   A
Sbjct: 292 ASAAVKA 298


>gi|50084356|ref|YP_045866.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49530332|emb|CAG68044.1| putative transcriptional regulator, luxR family [Acinetobacter sp.
           ADP1]
          Length = 246

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L W + G+   EIA IL IS  TV N++ SI +K   K+   AIA A+
Sbjct: 184 LTQREKEILKWTAVGRKQSEIAEILKISERTVENHLRSIRKKLEVKSTGQAIASAL 239


>gi|14627170|gb|AAK50054.2|AF364058_1 transcriptional activator [Burkholderia multivorans ATCC 17616]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|226362510|ref|YP_002780288.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240995|dbj|BAH51343.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 127

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           D  LTGRE E L  I++G ++ EI   L ISRNTV  ++++I+RK +   R+ A+A
Sbjct: 63  DDPLTGREHEILGMIADGASNAEIGRDLFISRNTVRFHVSNILRKMSVNNRTAAVA 118


>gi|225875065|ref|YP_002756524.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225792729|gb|ACO32819.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 213

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  +++G T+ EI  + GIS NT  N++ SI++K     R+ A   A+   
Sbjct: 148 ELTRRETEILEMLAKGLTNKEIGRVFGISENTARNHVNSIIQKLEVSDRTEAATTAILRG 207

Query: 245 IV 246
           I+
Sbjct: 208 II 209


>gi|153832308|ref|ZP_01984975.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
 gi|148871619|gb|EDL70474.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 40/61 (65%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ LT + +G ++ +IA  L +S +TV +++ SI RK   K R  AIA+A R
Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAIAWAKR 214

Query: 243 N 243
           N
Sbjct: 215 N 215


>gi|12620901|gb|AAG61130.1|AF330019_1 AHL receptor [Burkholderia multivorans]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|319794223|ref|YP_004155863.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315596686|gb|ADU37752.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 303

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L E  LL A Q +           +  LT RE E L+W+++GKT+ +I  ILG S  TVN
Sbjct: 217 LGETMLLFAMQRDGTAGASSARLAEAALTPRETEVLSWLAKGKTNRDIGEILGTSPRTVN 276

Query: 219 NYIASIMRKTATKTR 233
            ++  I  K   +TR
Sbjct: 277 KHLEHIFEKLGVETR 291


>gi|86358918|ref|YP_470810.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86283020|gb|ABC92083.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 305

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L AA Q    +S D    + F LT RE E L WI++GK + +I  ILG+S  TVN ++  
Sbjct: 226 LTAASQ----RSDDEMLRQRFALTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQ 281

Query: 224 IMRKTATKTRSGAIAYA 240
           I  K   + R+ A   A
Sbjct: 282 IYVKLGVENRASAAVKA 298


>gi|155233|gb|AAA27541.1| luxR protein [Aliivibrio fischeri]
 gi|455385|gb|AAA27551.1| regulatory protein [Aliivibrio fischeri]
 gi|225902|prf||1403259A luxR gene
          Length = 250

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE ECL W  EGK+S +I+ ILG S+ TV  ++ +   K  T  R  +I+ A+
Sbjct: 182 DLTKREKECLAWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAI 238


>gi|115358865|ref|YP_776003.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|13508495|gb|AAK27306.1| AHL receptor [Burkholderia ambifaria]
 gi|115284153|gb|ABI89669.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLRWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|188584215|ref|YP_001927660.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347713|gb|ACB83125.1| transcriptional regulator, LuxR family [Methylobacterium populi
           BJ001]
          Length = 243

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W++EGKT  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  +
Sbjct: 182 LTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGL 241

Query: 246 V 246
           +
Sbjct: 242 I 242


>gi|157412510|ref|YP_001483376.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9215]
 gi|254526652|ref|ZP_05138704.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9202]
 gi|157387085|gb|ABV49790.1| Regulatory protein, LuxR family [Prochlorococcus marinus str. MIT
           9215]
 gi|221538076|gb|EEE40529.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9202]
          Length = 92

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 40/58 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+ N
Sbjct: 16  LSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73


>gi|312886495|ref|ZP_07746104.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311301123|gb|EFQ78183.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 263

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L +I+EG +S +IA  L IS NT+ N+  +++RKT  K  +  +  AVRN +
Sbjct: 203 FTKREKGVLVYIAEGLSSKQIADKLNISENTIVNHKQNMLRKTNAKNVTELVVMAVRNRV 262

Query: 246 V 246
           +
Sbjct: 263 I 263


>gi|298248918|ref|ZP_06972722.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297546922|gb|EFH80789.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 788

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT R+VE L  ++EG T  EIA  L IS  TVN ++  I  K    TRS A  YAV   
Sbjct: 727 QLTQRQVEILRLLAEGLTDKEIAERLCISPRTVNAHLNKIYPKIHVSTRSAATRYAVERK 786

Query: 245 IV 246
           ++
Sbjct: 787 LI 788


>gi|163853910|ref|YP_001641953.1| autoinducer-binding domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665515|gb|ABY32882.1| Autoinducer-binding domain protein [Methylobacterium extorquens
           PA1]
          Length = 243

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W++EGKT  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  +
Sbjct: 182 LTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGL 241

Query: 246 V 246
           +
Sbjct: 242 I 242


>gi|91787249|ref|YP_548201.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696474|gb|ABE43303.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 349

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F+LT RE E L W+ +GK + +IA ILG S  TV  ++  +  K   +TR+ A   A+
Sbjct: 280 FKLTAREAEVLYWVIKGKINRDIAGILGASPATVKKHLEHVYAKLGVETRTAAAGMAL 337


>gi|305673633|ref|YP_003865305.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305411877|gb|ADM36996.1| two-component response regulator (paired with YhcY) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 215

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 43/75 (57%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +M   +D    K ++LT RE + L  I+ GK++ EIA  L IS  TV  ++++++ K   
Sbjct: 135 HMRNQHDPEKEKIYQLTRREKDVLNEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEV 194

Query: 231 KTRSGAIAYAVRNNI 245
             R+ A  +AV+ N+
Sbjct: 195 ADRTQAALFAVKYNL 209


>gi|256751296|ref|ZP_05492176.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749851|gb|EEU62875.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 205

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  IS G ++ EIA  L +S  TV N++ +I +K   K R+ A  Y ++N 
Sbjct: 141 DLTPREIEILKLISNGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 200

Query: 245 IV 246
            +
Sbjct: 201 TI 202


>gi|291298679|ref|YP_003509957.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567899|gb|ADD40864.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 386

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 41/61 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L+ ++ G ++ ++A  LGIS  TV  ++++++RKT T +R+ A  +AV + 
Sbjct: 299 ELTAREKEVLSCLAAGMSNRQVAKSLGISVRTVTVHVSNLLRKTGTGSRTEAALWAVEHG 358

Query: 245 I 245
           +
Sbjct: 359 L 359


>gi|126649643|ref|ZP_01721884.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593968|gb|EAZ87891.1| two-component response regulator [Bacillus sp. B14905]
          Length = 203

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE + LT ++EGKT+ EIA  L +S  TV NYI++I+ K     R  AIA
Sbjct: 142 LTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIA 194


>gi|330870194|gb|EGH04903.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 280

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+ECL W S GKTS EI+ IL  S  TV+ ++ +  RK  + +R  A+  A    
Sbjct: 192 DLTPRELECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARG 251

Query: 245 IV 246
           ++
Sbjct: 252 LL 253


>gi|330992245|ref|ZP_08316193.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter
           sp. SXCC-1]
 gi|329760444|gb|EGG76940.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter
           sp. SXCC-1]
          Length = 244

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE ECLTW+++GK + +I  IL +S NT+  ++ + +RK     R  A   A 
Sbjct: 182 LTRRERECLTWVAQGKDTADIGHILALSDNTIKFHLKNALRKLGCHNRVQAAVKAT 237


>gi|330817555|ref|YP_004361260.1| response regulator receiver protein [Burkholderia gladioli BSR3]
 gi|327369948|gb|AEA61304.1| response regulator receiver protein [Burkholderia gladioli BSR3]
          Length = 324

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           F LT RE E L W+S GKT+ +I  IL ++  TVN ++  + RK   +TRS
Sbjct: 261 FGLTTREAEVLLWVSRGKTNRDIGDILDMAPRTVNKHLEHLFRKLHVETRS 311


>gi|270261276|ref|ZP_06189549.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044760|gb|EFA17851.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 33/45 (73%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           LT RE + L W SEGKTS+EIA+++G+S  TVN +I + ++K + 
Sbjct: 178 LTLREKDILRWCSEGKTSEEIAMLMGLSERTVNFHIGNSIKKLSV 222


>gi|297202869|ref|ZP_06920266.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197715208|gb|EDY59242.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 230

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I+EG T+ EIA  L +S  TV  +I ++  KT  K R+ A+ YA    +
Sbjct: 162 LTAREVEVLALIAEGLTNQEIARELHVSTATVKTHINNLFAKTGIKDRAQAVRYAYAKGL 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|209550642|ref|YP_002282559.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536398|gb|ACI56333.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 305

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S D    + F LT RE E L WI++GK + +I  ILG+S  TVN ++  I  K   + R
Sbjct: 232 RSDDEMLRQRFSLTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENR 291

Query: 234 SGAIAYA 240
           + A   A
Sbjct: 292 ASAAVKA 298


>gi|209550397|ref|YP_002282314.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536153|gb|ACI56088.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 241

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  +
Sbjct: 180 LSTRELEVVRWTAQGKTSIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|328952588|ref|YP_004369922.1| two component transcriptional regulator, LuxR family [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452912|gb|AEB08741.1| two component transcriptional regulator, LuxR family [Desulfobacca
           acetoxidans DSM 11109]
          Length = 222

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I+EGK+S EI  +L IS  TV ++ A++MRK   +  +  + YA++  
Sbjct: 155 LTKREKEILRLIAEGKSSKEIGAVLFISSRTVEHHRANMMRKLGCRKIAELVRYAIQKG 213


>gi|297624881|ref|YP_003706315.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297166061|gb|ADI15772.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 227

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE   L  +++G ++ EIAV LG+S  TV N ++ I  K     R+ A  YA+R  
Sbjct: 160 ELTEREATILRLLAQGASNQEIAVSLGVSEKTVRNRLSEIFSKLRLNNRTQAALYALREG 219

Query: 245 IV 246
           I 
Sbjct: 220 IA 221


>gi|271962958|ref|YP_003337154.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506133|gb|ACZ84411.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 234

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 171 LTDREMEVLRLVAKGMNNREIAKQLFISENTVKNHVRNILDKLQLHSRMEAVVYAVRERM 230

Query: 246 V 246
           +
Sbjct: 231 L 231


>gi|16080361|ref|NP_391188.1| two-component response regulator YvqE responding to cell wall
           stress [Bacillus subtilis subsp. subtilis str. 168]
 gi|221311254|ref|ZP_03593101.1| hypothetical protein Bsubs1_17956 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315581|ref|ZP_03597386.1| hypothetical protein BsubsN3_17872 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320496|ref|ZP_03601790.1| hypothetical protein BsubsJ_17835 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324780|ref|ZP_03606074.1| hypothetical protein BsubsS_17986 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312856|ref|YP_004205143.1| two-component response regulator YvqE [Bacillus subtilis BSn5]
 gi|68051995|sp|O32197|LIAR_BACSU RecName: Full=Transcriptional regulatory protein liaR
 gi|2635805|emb|CAB15298.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. subtilis str. 168]
 gi|2832821|emb|CAA11745.1| YvqC protein [Bacillus subtilis]
 gi|320019130|gb|ADV94116.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis BSn5]
          Length = 211

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++
Sbjct: 150 LTKRELEILCLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|251800174|ref|YP_003014905.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547800|gb|ACT04819.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2]
          Length = 229

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 42/63 (66%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + L+ +E+  + +I++G T+ EIA  L I+ +TV  +I ++M KT+++ R+ A+A   R 
Sbjct: 166 YALSEKELRVMQYIADGFTTKEIAPFLNIAESTVKYFINNVMLKTSSRNRTEAVANLYRA 225

Query: 244 NIV 246
           N++
Sbjct: 226 NLL 228


>gi|54026217|ref|YP_120459.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017725|dbj|BAD59095.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 230

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I  G+ + EIA  LGIS  TV +++  I  K   + R+ AI +A  + 
Sbjct: 162 ELTAREYEVLELIGRGRVNAEIATELGISEVTVKSHVGHIFGKLDLRDRAAAIVFAFDHG 221

Query: 245 IV 246
           +V
Sbjct: 222 VV 223


>gi|27382386|ref|NP_773915.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355557|dbj|BAC52540.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 123

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT RE++ L  ++EG ++  IA  LGIS +TV  ++ S++ K     R+ A+A+A 
Sbjct: 57  EDIALTQRELDVLALMAEGASNKMIARQLGISVHTVKFHVGSLLDKLDATGRTDAVAHAA 116

Query: 242 RNNIV 246
           R  ++
Sbjct: 117 RRGVI 121


>gi|226364726|ref|YP_002782508.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243215|dbj|BAH53563.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 230

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA Y+  +  S D    +  ELT RE++ L  I  G ++ EI   LGIS  TV +++  
Sbjct: 137 VLATYR-TVAPSTDGERNRLTELTARELDVLALIGRGHSNSEIGRELGISGVTVKSHVGH 195

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K   + R+ AI YA  + IV
Sbjct: 196 IFLKLDLRDRAAAIVYAFDHGIV 218


>gi|148239235|ref|YP_001224622.1| two component system response regulator [Synechococcus sp. WH 7803]
 gi|147847774|emb|CAK23325.1| Possible two component system response regulator [Synechococcus sp.
           WH 7803]
          Length = 227

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLT 195
           G+M +   G+ I  D +  +  +A  +   +   DV     +E       L+ RE+E L 
Sbjct: 120 GVMFVSSLGKGIDGDFIRSLSAIA--EGGNYYPKDVQTAAGYEDIEILPELSDREMEVLK 177

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +S G T+ EIAV L +S  TV  +++SI+ K   K R+ A+  A++  I
Sbjct: 178 VLSCGMTNKEIAVTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAGI 227


>gi|27376354|ref|NP_767883.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349494|dbj|BAC46508.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 242

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 148 FPKGRIILRDR-LWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           F    I L +R L  + L+A Y  + + K   +       L+ RE E LT  + G++SDE
Sbjct: 140 FGGAEIDLPERDLPALHLMALYAFDRVLKLRGLPAAPQLALSLREREVLTLAAVGRSSDE 199

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L I+  TV  +I S  +K    TR+ A+  A+R+ I+
Sbjct: 200 IADALAITGRTVKAHIKSCCKKLGAATRTQAVMIAMRDRII 240


>gi|315121858|ref|YP_004062347.1| transcriptional regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495260|gb|ADR51859.1| transcriptional regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 235

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE  CL    +G TS+EIA  LG+S +TVN Y+ S   K     R  AIA A+R
Sbjct: 174 LTERETSCLQLAGDGYTSEEIAKKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230


>gi|86739478|ref|YP_479878.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86566340|gb|ABD10149.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+ YAVR  +
Sbjct: 174 LTDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 233

Query: 246 V 246
           +
Sbjct: 234 L 234


>gi|37523606|ref|NP_926983.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35214611|dbj|BAC91978.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 90

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 43/57 (75%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ L  +++G T+++IA +L IS+ TV+N++++I++KT TK R   + +A++
Sbjct: 11  LSDREMQILELVAQGHTNEDIAEVLEISKRTVDNHVSNILQKTKTKNRVELVRWALQ 67


>gi|310686584|gb|ADP02958.1| LuxR [Cloning vector pLR3]
 gi|310686589|gb|ADP02962.1| LuxR [Cloning vector pLR4]
          Length = 269

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE ECL W  EGK+S +I+ ILG S+ TV  ++ +   K  T  R  +I+ A+
Sbjct: 201 DLTKREKECLAWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAI 257


>gi|226860311|gb|ACO88865.1| transcriptional regulatory protein [Microbacterium sp. MA1]
          Length = 228

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  I+ G+T+ EIA  LGIS  TV +++  I  K   + R+ AI YA  + 
Sbjct: 162 ELTDRESDVLRLIARGQTNTEIASTLGISSVTVKSHVNHIFTKLDLRDRAAAIVYAFDHG 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|218532854|ref|YP_002423670.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218525157|gb|ACK85742.1| transcriptional regulator, LuxR family [Methylobacterium
           chloromethanicum CM4]
          Length = 243

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W++EGKT  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  +
Sbjct: 182 LTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGL 241

Query: 246 V 246
           +
Sbjct: 242 I 242


>gi|12620905|gb|AAG61132.1|AF330021_1 AHL receptor [Burkholderia stabilis]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISGRTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|156741561|ref|YP_001431690.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232889|gb|ABU57672.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 242

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+ YA++  
Sbjct: 164 LTSREIEILDCIARGLSNKEIATQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRG 222


>gi|190892823|ref|YP_001979365.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190698102|gb|ACE92187.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
 gi|327189482|gb|EGE56638.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 241

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  +
Sbjct: 180 LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|91778395|ref|YP_553603.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91691055|gb|ABE34253.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 361

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE E L W+S GKT+ +I  ILG++  TVN ++  +  K   +TR
Sbjct: 298 FGLTAREAEVLLWLSRGKTNRDIGDILGMAPRTVNKHLEHVFGKLHVETR 347


>gi|308050904|ref|YP_003914470.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307633094|gb|ADN77396.1| transcriptional regulator, LuxR family [Ferrimonas balearica DSM
           9799]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 10/113 (8%)

Query: 130 YCSLTFDVARIRIGLMLLFPKG-RIILRDRLW--------EIGLLAAYQANMFKSYDVHW 180
           + +L F    +R   + + P+  R +L D+LW         +  L     +   S +V  
Sbjct: 92  FIALGFSGLIVRDYTLEMLPRAIRALLADQLWFSREAMSSSLKQLVNVGGHCGHSVNV-L 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           G  ++L+ +E +   ++ +GK++ EIA+ + IS +TV N++++I++KT  ++R
Sbjct: 151 GAQYQLSAKEQQVFHYLLQGKSNKEIALGMNISLSTVKNHVSNILQKTHKQSR 203


>gi|229552512|ref|ZP_04441237.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314064|gb|EEN80037.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 233

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA+++ 
Sbjct: 158 ELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHG 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|299534498|ref|ZP_07047831.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298730126|gb|EFI70668.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 203

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE + LT ++EGKT+ EIA  L +S  TV NYI++I+ K     R  AIA
Sbjct: 142 LTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIA 194


>gi|240170339|ref|ZP_04748998.1| transcriptional regulator, LuxR family protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 528

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L IS  T  N++     K     R GA  YA+RN +
Sbjct: 465 LTPREVEVLCLVARGASNKEIAAALVISEKTARNHVERTYAKIGVTNRIGASMYALRNGL 524

Query: 246 V 246
           V
Sbjct: 525 V 525


>gi|291300839|ref|YP_003512117.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570059|gb|ADD43024.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+  Y A +  + D     D  LT RE+E L  I+ G ++ EIA  L IS  TV  Y++ 
Sbjct: 138 LVGRYAARIRPAEDTP--DDTALTPRELEVLRHIANGLSNSEIAATLVISHETVKTYVSR 195

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
           I+ K   + R  A+ YA R  +
Sbjct: 196 ILTKLGLRDRVQAVVYAYRRGL 217


>gi|117928597|ref|YP_873148.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649060|gb|ABK53162.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  +++G+++ EI   LG+S  TV +++A I RK  T  R+  +A A+R  
Sbjct: 163 DLSSREIEVLRLVADGRSNKEIGDQLGLSALTVKSHLARIARKLGTGDRAEMVALAMRAG 222

Query: 245 IV 246
           I+
Sbjct: 223 II 224


>gi|83747411|ref|ZP_00944450.1| SolR [Ralstonia solanacearum UW551]
 gi|207744773|ref|YP_002261165.1| transcriptional activator protein solr [Ralstonia solanacearum
           IPO1609]
 gi|83725868|gb|EAP73007.1| SolR [Ralstonia solanacearum UW551]
 gi|206596183|emb|CAQ63110.1| transcriptional activator protein solr [Ralstonia solanacearum
           IPO1609]
          Length = 236

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   +
Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILHISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|269965326|ref|ZP_06179446.1| putative transcriptional regulator, LuxR family [Vibrio
           alginolyticus 40B]
 gi|269829972|gb|EEZ84201.1| putative transcriptional regulator, LuxR family [Vibrio
           alginolyticus 40B]
          Length = 218

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT REV+ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A R
Sbjct: 157 EVELTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 216

Query: 243 N 243
           N
Sbjct: 217 N 217


>gi|264679733|ref|YP_003279642.1| LuxR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210248|gb|ACY34346.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni CNB-2]
          Length = 274

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 168 YQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           ++AN F    +   K FE LT REVE L  I++GK+S E+A  L IS  TV+ +I +I  
Sbjct: 196 FKAN-FHEESIFKHKSFESLTEREVEILKLIAQGKSSLEVASYLQISPLTVSTHIKNIYG 254

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   +TR+ A+  A+   I+
Sbjct: 255 KMQVRTRAQAVRCAILIGII 274


>gi|169825786|ref|YP_001695944.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990274|gb|ACA37814.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 199

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE + LT ++EGKT+ EIA  L +S  TV NYI++I+ K     R  AIA
Sbjct: 138 LTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIA 190


>gi|75910055|ref|YP_324351.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75703780|gb|ABA23456.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 227

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LTGRE+E L+ +++GKT+ EIA  L I+  TV  ++ +I+ K     R  A+  A++
Sbjct: 157 DHPLTGRELEILSLLAKGKTNQEIATALYITPGTVRVHVHAILHKLEVSDRHQAVVVALQ 216

Query: 243 NNIV 246
             ++
Sbjct: 217 KRLI 220


>gi|307141914|gb|ADN34749.1| transcriptional activator CmrR [Pseudomonas sp. CMR12a]
          Length = 235

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + +LT RE E L W   GKTS EI+ +L IS NTVN +I + + K +   ++ A+  A
Sbjct: 171 EVKLTSREKEVLKWTGSGKTSFEISCLLAISENTVNFHIKNSILKLSAANKTAAVIQA 228


>gi|329940013|ref|ZP_08289295.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329300839|gb|EGG44735.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I+EG ++ EIA  L +S  TV  +I ++  KT  K R+ A+ YA R  +
Sbjct: 161 LTVREVEVLVLIAEGLSNQEIARRLHVSTATVKTHINNMFAKTGLKDRAQAVRYAFRKGL 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|302867524|ref|YP_003836161.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302570383|gb|ADL46585.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 219

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  I++G  + EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R
Sbjct: 155 DVGLTPRELEVLRLIADGLANSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYR 214

Query: 243 NNIV 246
             +V
Sbjct: 215 TGLV 218


>gi|254563872|ref|YP_003070967.1| N-acylhomoserine lactone LuxR family transcriptional regulator
           [Methylobacterium extorquens DM4]
 gi|254271150|emb|CAX27157.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens DM4]
          Length = 165

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W++EGKT  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  +
Sbjct: 104 LTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGL 163

Query: 246 V 246
           +
Sbjct: 164 I 164


>gi|167584589|ref|ZP_02376977.1| LuxR family transcriptional regulatory protein [Burkholderia
           ubonensis Bu]
          Length = 222

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E LT ++EG  + EIA  L IS NTV  +++SI  K    +R+ A+   +R+ +
Sbjct: 160 LTPREIEVLTMLAEGLGNKEIARQLDISDNTVKFHLSSIFGKLGASSRTEAVMQGMRHGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|114328502|ref|YP_745659.1| LuxR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316676|gb|ABI62736.1| transcriptional regulator, LuxR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 306

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +T RE E L WI  GK + +IA ILG+S  TVN ++  I  K   + R+ A A  ++
Sbjct: 243 LPVTAREAEVLLWIGRGKQNRDIADILGLSPRTVNKHLEQIYTKIGVENRAAAAAVVMK 301


>gi|88854587|ref|ZP_01129254.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88816395|gb|EAR26250.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 538

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 44/64 (68%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L+ RE+E L  +S+G ++ EIA  L +S +TV+ ++A+I+ K    +R+GA +YA++
Sbjct: 475 EGQLSARELEVLRLVSQGLSNPEIAASLVLSEHTVHRHVANILTKLDQTSRTGAASYAIQ 534

Query: 243 NNIV 246
             ++
Sbjct: 535 AGLL 538


>gi|307295298|ref|ZP_07575137.1| transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878801|gb|EFN10020.1| transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 222

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT  EV CL WI  GKT DE+A I+G +R T+  ++ +  +K     R+ A+  A +
Sbjct: 144 LTPLEVSCLRWIGRGKTDDEVAAIMGRARPTIRFHLQNAAKKLGAVNRTQAVFLAAQ 200


>gi|294340032|emb|CAZ88396.1| autoinducer-binding transcriptional regulator LuxR family
           [Thiomonas sp. 3As]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L W ++GKT+ EIA IL IS  T N +IA+ + K     ++ A+  A
Sbjct: 176 LTDREIEVLRWTADGKTASEIADILNISERTANFHIANAIAKLHAPNKTAAVIRA 230


>gi|229588916|ref|YP_002871035.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360782|emb|CAY47640.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 235

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W   GKT+ E++ ILG S  T+N +IA+  RK  + +R  A+  A+   +
Sbjct: 173 LTLRESEVLKWTGVGKTTWEMSCILGCSERTINFHIANASRKLGSFSRRQAVGVALAQGL 232

Query: 246 V 246
           +
Sbjct: 233 I 233


>gi|260466633|ref|ZP_05812821.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029639|gb|EEW30927.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 256

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHWGKDFELT 187
           +L     R + GL++       + +D L+EI      L A  A +  S     G+   ++
Sbjct: 140 ALPVHADRGQCGLVVFLGSEIALPQDTLYEIHARCFSLFAAVARILPS---DAGRTRAIS 196

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+ECL   + G TS+EIA +L +S +T N Y+    +K     R+ A+A A+R  ++
Sbjct: 197 KRELECLKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255


>gi|218441961|ref|YP_002380290.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218174689|gb|ACK73422.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ I
Sbjct: 150 LSERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGI 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|111220761|ref|YP_711555.1| putative protein-glutamate methylesterase [Frankia alni ACN14a]
 gi|111148293|emb|CAJ59965.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+ YAVR  +
Sbjct: 174 LTDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 233

Query: 246 V 246
           +
Sbjct: 234 L 234


>gi|240141366|ref|YP_002965846.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|240011343|gb|ACS42569.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
          Length = 165

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W++EGKT  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  +
Sbjct: 104 LTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGL 163

Query: 246 V 246
           +
Sbjct: 164 I 164


>gi|58533128|gb|AAW78919.1| ExpR [Erwinia amylovora]
          Length = 240

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + + RE+E L W +EGKTS EI++IL IS+NTVN +   + ++     ++   +YA   
Sbjct: 178 LDFSERELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAV 237

Query: 244 NIV 246
            ++
Sbjct: 238 GLI 240


>gi|150376321|ref|YP_001312917.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150030868|gb|ABR62984.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 309

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 161 EIGLLAAYQANMF---------KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           +I  L A  AN F          S D    + F+LT RE E L WI++GK++ +I  ILG
Sbjct: 214 QISYLGAIGANEFLFRLTTENGMSDDETLRQHFQLTPRESEVLLWIAKGKSNRDIGEILG 273

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +S  TV  ++  I  K   + R+ A   A +
Sbjct: 274 LSSRTVTKHLEQIYVKLGVENRASAAVKATQ 304


>gi|300702552|ref|YP_003744152.1| transcriptional activator protein solr [Ralstonia solanacearum
           CFBP2957]
 gi|299070213|emb|CBJ41504.1| Transcriptional activator protein solR [Ralstonia solanacearum
           CFBP2957]
          Length = 236

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   +
Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|170739988|ref|YP_001768643.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194262|gb|ACA16209.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46]
          Length = 118

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  ++EG ++  IA  LGIS +T   ++ S++ K     R+ A+A+A R
Sbjct: 53  DPGLTPREIEVLGLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGRTDAVAHAAR 112

Query: 243 NNIV 246
             ++
Sbjct: 113 RGVI 116


>gi|311031073|ref|ZP_07709163.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 213

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE   L  + EGK + EIA  L +S  TV N++  I++K   + R+    +A+RN
Sbjct: 151 VELTSRERSILQLVGEGKNNQEIAEALYLSIGTVKNHVTVILQKLGLRDRTQLAIFAIRN 210

Query: 244 NIV 246
            +V
Sbjct: 211 GVV 213


>gi|256396690|ref|YP_003118254.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362916|gb|ACU76413.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  ++ G+ + EIA  L I+ NTV N++ +I+ K    +R  A+ YAVR  
Sbjct: 161 KLTDREMEVLKLVATGRNNREIAKELFITENTVKNHVRNILEKLNLHSRMEAVVYAVREK 220

Query: 245 IV 246
           ++
Sbjct: 221 LL 222


>gi|229014521|ref|ZP_04171639.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229136171|ref|ZP_04264924.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229170061|ref|ZP_04297752.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613408|gb|EEK70542.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228647330|gb|EEL03412.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228746871|gb|EEL96756.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA +L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|222150233|ref|YP_002551190.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221737215|gb|ACM38178.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 246

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L ++ EG TS+E++ +L IS +TV+ Y+  +  K   K R   +A A R
Sbjct: 182 DVRLTRRELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHMVAIAYR 241

Query: 243 NNIV 246
             ++
Sbjct: 242 LGLI 245


>gi|9297072|sp|P74946|VANR_VIBAN RecName: Full=Transcriptional activator protein vanR
 gi|1568660|gb|AAC45213.1| VanR [Listonella anguillarum]
          Length = 240

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REV+CL W +EGK++ EIA I+  S  TV  + ++  +K     R  AI  A+
Sbjct: 176 LTAREVQCLAWAAEGKSAWEIATIINTSERTVKFHFSNACKKLGATNRYQAITKAI 231


>gi|258652644|ref|YP_003201800.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258555869|gb|ACV78811.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 220

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+ + EIA +  +S NT+ +YI S+ RK    +R+ A+ + 
Sbjct: 143 GRAEGLTDREAEILALITQGRGNAEIASMTYLSPNTIKSYIRSVYRKIGVSSRTQAVLWG 202

Query: 241 VRNN 244
           V + 
Sbjct: 203 VHHG 206


>gi|171060622|ref|YP_001792971.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170778067|gb|ACB36206.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 222

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 169 QANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           QAN  ++Y     +   + +LT RE E L  +++G T  EI V LG+SR+T+ +Y+  I 
Sbjct: 140 QANRPQAYQPTTDQLMPNVQLTEREREVLLRVAKGFTLPEIGVQLGLSRHTIADYVKQIY 199

Query: 226 RKTATKTRSGAIAYAVR 242
           RK    +R+ A   A R
Sbjct: 200 RKLNVSSRAEAALEAQR 216


>gi|123967708|ref|YP_001008566.1| LuxR family regulatory protein [Prochlorococcus marinus str.
           AS9601]
 gi|126695511|ref|YP_001090397.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9301]
 gi|123197818|gb|ABM69459.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. AS9601]
 gi|126542554|gb|ABO16796.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9301]
          Length = 92

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 40/58 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+ N
Sbjct: 16  LSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73


>gi|13472562|ref|NP_104129.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023308|dbj|BAB49915.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 256

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           R + GL++       + +D L+EI      L AA      +  D   G+   ++ RE+EC
Sbjct: 147 RGQCGLVVFLGSKMALPQDALYEIHARCFSLFAAVA--RIRPSDA--GRMRAISKRELEC 202

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L   + G TS+EIA +L +S +T N Y+    +K     R+ A+A A+R  ++
Sbjct: 203 LKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255


>gi|163847477|ref|YP_001635521.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222525329|ref|YP_002569800.1| LuxR family transcriptional regulator [Chloroflexus sp. Y-400-fl]
 gi|163668766|gb|ABY35132.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449208|gb|ACM53474.1| transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl]
          Length = 487

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + +++ RE E L  ++ G T+ +IA+ L IS NTV  ++ +I  K   ++R+ A  YA+
Sbjct: 3   NESQISEREREILRLVATGATNQQIAIALNISVNTVKVHLRNIFAKIGVESRTEATVYAI 62

Query: 242 RNNIV 246
           RN IV
Sbjct: 63  RNGIV 67


>gi|171058058|ref|YP_001790407.1| LuxR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775503|gb|ACB33642.1| transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6]
          Length = 267

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L WI  GK++ EI  ILGIS  TV N++  ++ K     R+ A+  A+  ++
Sbjct: 205 ITVREQEILKWIYLGKSNSEIGQILGISALTVKNHVQKMLHKLNVVNRAQAVGRAIEAHL 264

Query: 246 V 246
           +
Sbjct: 265 I 265


>gi|229020573|ref|ZP_04177315.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229026791|ref|ZP_04183123.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228734514|gb|EEL85176.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228740737|gb|EEL90993.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA +L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|301305257|ref|ZP_07211354.1| autoinducer binding domain protein [Escherichia coli MS 124-1]
 gi|300839463|gb|EFK67223.1| autoinducer binding domain protein [Escherichia coli MS 124-1]
          Length = 226

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 30/45 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K
Sbjct: 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKK 221


>gi|69248021|ref|ZP_00604584.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|227550521|ref|ZP_03980570.1| LuxR family response regulator [Enterococcus faecium TX1330]
 gi|257880197|ref|ZP_05659850.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257882998|ref|ZP_05662651.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|257888548|ref|ZP_05668201.1| regulatory protein [Enterococcus faecium 1,141,733]
 gi|257891419|ref|ZP_05671072.1| regulatory protein [Enterococcus faecium 1,231,410]
 gi|257897077|ref|ZP_05676730.1| regulatory protein [Enterococcus faecium Com12]
 gi|258614385|ref|ZP_05712155.1| LuxR family DNA-binding response regulator [Enterococcus faecium
           DO]
 gi|293377300|ref|ZP_06623504.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293572485|ref|ZP_06683464.1| transcriptional regulatory protein DegU [Enterococcus faecium E980]
 gi|294622136|ref|ZP_06701212.1| transcriptional regulatory protein DegU [Enterococcus faecium
           U0317]
 gi|68194589|gb|EAN09079.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|227180422|gb|EEI61394.1| LuxR family response regulator [Enterococcus faecium TX1330]
 gi|257814425|gb|EEV43183.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257818656|gb|EEV45984.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|257824602|gb|EEV51534.1| regulatory protein [Enterococcus faecium 1,141,733]
 gi|257827779|gb|EEV54405.1| regulatory protein [Enterococcus faecium 1,231,410]
 gi|257833642|gb|EEV60063.1| regulatory protein [Enterococcus faecium Com12]
 gi|291598337|gb|EFF29424.1| transcriptional regulatory protein DegU [Enterococcus faecium
           U0317]
 gi|291607402|gb|EFF36745.1| transcriptional regulatory protein DegU [Enterococcus faecium E980]
 gi|292643992|gb|EFF62098.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ 
Sbjct: 148 ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|330836949|ref|YP_004411590.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
 gi|329748852|gb|AEC02208.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
          Length = 299

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           + +T RE   +  I+ G+T+ EIA+ L IS NTVNN++A+I  KT  ++R
Sbjct: 237 YHITEREFSVIKLIANGRTNKEIAMELNISTNTVNNHVANIFSKTEVRSR 286


>gi|308172920|ref|YP_003919625.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605784|emb|CBI42155.1| two-component response regulator [YhcY] [Bacillus amyloliquefaciens
           DSM 7]
          Length = 214

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D +  K ++LT RE + L  I++GK++ EIA  L IS  TV  ++++++ K     R+ A
Sbjct: 140 DQNKEKYYQLTPREKDVLQEIAKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQA 199

Query: 237 IAYAVRNNI 245
             YAV+ N+
Sbjct: 200 ALYAVKYNV 208


>gi|325520628|gb|EGC99691.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 109

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 46  LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 105

Query: 246 V 246
           +
Sbjct: 106 I 106


>gi|293553248|ref|ZP_06673885.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1039]
 gi|291602658|gb|EFF32873.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1039]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ 
Sbjct: 148 ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|257899016|ref|ZP_05678669.1| regulatory protein [Enterococcus faecium Com15]
 gi|257836928|gb|EEV62002.1| regulatory protein [Enterococcus faecium Com15]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ 
Sbjct: 148 ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|257893584|ref|ZP_05673237.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260560505|ref|ZP_05832679.1| regulatory protein [Enterococcus faecium C68]
 gi|261209022|ref|ZP_05923427.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289565166|ref|ZP_06445618.1| response regulator LiaR [Enterococcus faecium D344SRF]
 gi|293563601|ref|ZP_06678047.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1162]
 gi|293569319|ref|ZP_06680617.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1071]
 gi|294615290|ref|ZP_06695166.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1636]
 gi|294619055|ref|ZP_06698550.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1679]
 gi|314939788|ref|ZP_07847008.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314942017|ref|ZP_07848877.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314950011|ref|ZP_07853304.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314953533|ref|ZP_07856445.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314992148|ref|ZP_07857595.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314995132|ref|ZP_07860248.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|257829963|gb|EEV56570.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260073507|gb|EEW61835.1| regulatory protein [Enterococcus faecium C68]
 gi|260077061|gb|EEW64783.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289162987|gb|EFD10835.1| response regulator LiaR [Enterococcus faecium D344SRF]
 gi|291588025|gb|EFF19875.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1071]
 gi|291591848|gb|EFF23481.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1636]
 gi|291594716|gb|EFF26098.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1679]
 gi|291604451|gb|EFF33939.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1162]
 gi|313590623|gb|EFR69468.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313593289|gb|EFR72134.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594456|gb|EFR73301.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313599194|gb|EFR78039.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313640928|gb|EFS05508.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313643658|gb|EFS08238.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ 
Sbjct: 148 ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|116253270|ref|YP_769108.1| LuxR/GerE family transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257918|emb|CAK09016.1| putative LuxR/GerE family transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  +
Sbjct: 177 LSNRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 236

Query: 246 V 246
           +
Sbjct: 237 I 237


>gi|91223299|ref|ZP_01258565.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|91192112|gb|EAS78375.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT REV+ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A R
Sbjct: 149 EVELTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 208

Query: 243 N 243
           N
Sbjct: 209 N 209


>gi|292487894|ref|YP_003530769.1| transcriptional activator protein expR [Erwinia amylovora CFBP1430]
 gi|292899116|ref|YP_003538485.1| LuxR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291198964|emb|CBJ46075.1| LuxR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291553316|emb|CBA20361.1| Transcriptional activator protein ExpR [Erwinia amylovora CFBP1430]
          Length = 240

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + + RE+E L W +EGKTS EI++IL IS+NTVN +   + ++     ++   +YA 
Sbjct: 178 LDFSERELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAA 235


>gi|182679457|ref|YP_001833603.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635340|gb|ACB96114.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L W + G+   +IA  LG+S  TV N++  I R+ A  T + AI  A+RN 
Sbjct: 176 KLSHREREILAWTAAGRRQADIAATLGLSERTVENHLRRIRRRLAVMTTAQAIRVAIRNG 235


>gi|116696371|ref|YP_841947.1| response regulator [Ralstonia eutropha H16]
 gi|113530870|emb|CAJ97217.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 4/62 (6%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI----AYAV 241
           L+ RE E L +I++G T+ EIA  L +SR T+ +++ +I +K A KTR+ AI    AY V
Sbjct: 178 LSARETEILVFINKGSTNREIADALSLSRLTIESHVKNIYKKLAVKTRTQAIFEARAYGV 237

Query: 242 RN 243
            N
Sbjct: 238 LN 239


>gi|33326387|gb|AAQ08608.1| putative transcription regulator [Agrobacterium vitis]
          Length = 248

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L ++ EG TS+E++ +L IS +TV+ Y+  +  K   K R   +A A R
Sbjct: 184 DVRLTRRELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHMVAIAYR 243

Query: 243 NNIV 246
             ++
Sbjct: 244 LGLI 247


>gi|260219834|emb|CBA26763.1| hypothetical protein Csp_G38260 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 359

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F+LT RE E L W+ +GKT+ +I  ILG S  TV  ++  +  K   +TR+ A   A+
Sbjct: 290 FKLTAREAEVLYWVVKGKTNKDIGDILGSSPMTVKKHLERVFVKLGVETRTAAAGMAM 347


>gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 233

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           ++ EI  L   + +M K  +     DF  T RE + L  ++EG  + EIA  LG +   V
Sbjct: 145 QIEEIKALLTQRGSMIKQNNSGIKIDF--TPREQDVLNLVAEGLMNKEIASRLGTTVRNV 202

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             Y++ +  KT T +R+  + YA+ N +V
Sbjct: 203 EKYVSRLFGKTGTNSRTELVRYALENGLV 231


>gi|260773944|ref|ZP_05882859.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP
           69.14]
 gi|260610905|gb|EEX36109.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP
           69.14]
          Length = 240

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ELT RE +CL+W +EGK++ EIA I+  S  TV  ++++  +K     R  AI  A+
Sbjct: 175 ELTCREGQCLSWAAEGKSAWEIAQIINTSERTVKFHLSNACKKLGATNRYQAITKAI 231


>gi|218662896|ref|ZP_03518826.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 236

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  +
Sbjct: 175 LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 234

Query: 246 V 246
           +
Sbjct: 235 I 235


>gi|229172177|ref|ZP_04299742.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3]
 gi|228611520|gb|EEK68777.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3]
          Length = 207

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 145 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 204

Query: 245 I 245
           +
Sbjct: 205 L 205


>gi|223935792|ref|ZP_03627707.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895393|gb|EEF61839.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D+ L+ RE + L ++ +G    EIA  +G+S +TVNNY+  I  K    TR GA+A  V 
Sbjct: 156 DYGLSAREKDILQYMVKGLIKKEIAEEMGLSYHTVNNYLRRIYDKLHVHTRGGAVAKTVE 215

Query: 243 NNIV 246
             ++
Sbjct: 216 EKLL 219


>gi|291485797|dbj|BAI86872.1| hypothetical protein BSNT_04924 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 211

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++
Sbjct: 150 LTKRELEILFLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|312199837|ref|YP_004019898.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231173|gb|ADP84028.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+ YAVR  +
Sbjct: 174 LTDREMEVLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 233

Query: 246 V 246
           +
Sbjct: 234 L 234


>gi|257885240|ref|ZP_05664893.1| regulatory protein [Enterococcus faecium 1,231,501]
 gi|257821092|gb|EEV48226.1| regulatory protein [Enterococcus faecium 1,231,501]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ 
Sbjct: 148 ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|192359370|ref|YP_001983632.1| response regulator [Cellvibrio japonicus Ueda107]
 gi|190685535|gb|ACE83213.1| response regulator [Cellvibrio japonicus Ueda107]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G T  E+A  LGISR+TV  +I +I RK A   RS A+  A +  
Sbjct: 162 ELTPRETEILRGIAKGFTYTELAEWLGISRHTVPVHIKNIYRKLAANNRSEAVYEASKRG 221

Query: 245 IV 246
           ++
Sbjct: 222 LI 223


>gi|42781357|ref|NP_978604.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC
           10987]
 gi|42737279|gb|AAS41212.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC
           10987]
          Length = 211

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G+++ EIA +L I+  TV  ++++++ K     R+ A  YAV+  +
Sbjct: 151 LTKREQEVLREIAQGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYGV 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|312792317|ref|YP_004025240.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179457|gb|ADQ39627.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 215

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE++ +  I++G ++ EIA +L IS  TV NYI+SI++K   + R+    Y  +N
Sbjct: 155 ELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQIAIYYYKN 213


>gi|264678731|ref|YP_003278638.1| transcriptional regulator, luxR family [Comamonas testosteroni
           CNB-2]
 gi|262209244|gb|ACY33342.1| transcriptional regulator, luxR family [Comamonas testosteroni
           CNB-2]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L W + G+   EIA  LG+S  TV N++  I ++    T + AI  A+RN 
Sbjct: 177 LSDREREVLAWTAAGRRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRVAIRNG 235


>gi|299529754|ref|ZP_07043189.1| transcriptional regulator, luxR family protein [Comamonas
           testosteroni S44]
 gi|298722272|gb|EFI63194.1| transcriptional regulator, luxR family protein [Comamonas
           testosteroni S44]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L W + G+   EIA  LG+S  TV N++  I ++    T + AI  A+RN 
Sbjct: 177 LSDREREVLAWTAAGRRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRMAIRNG 235


>gi|218896470|ref|YP_002444881.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543325|gb|ACK95719.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 148 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|159901957|gb|ABX10688.1| two-component system response regulator [uncultured planctomycete
           8FN]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  ++ GKT+ EIA  L IS  TV  ++ +I+RK     R+ A  +A R
Sbjct: 147 EVPLTAREAEVLKHLTSGKTNKEIANSLTISYETVKEHVQNILRKIGVTDRTQAAVWAFR 206

Query: 243 NNIV 246
             IV
Sbjct: 207 KGIV 210


>gi|153010196|ref|YP_001371410.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562084|gb|ABS15581.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 216

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+ RE E L  I +G  + EIA  LG+S +TV++Y+ +I +K +  +R+ A   A
Sbjct: 148 GEFIHLSRRETEVLKEIGDGHKNGEIARKLGLSEHTVSDYVKAIYQKLSVSSRAEATREA 207

Query: 241 VRNNIV 246
           +R  +V
Sbjct: 208 IRRGLV 213


>gi|116495146|ref|YP_806880.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191638654|ref|YP_001987820.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus
           casei BL23]
 gi|227534839|ref|ZP_03964888.1| LuxR family response regulator [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239632026|ref|ZP_04675057.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066710|ref|YP_003788733.1| CitB family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116105296|gb|ABJ70438.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712956|emb|CAQ66962.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus
           casei BL23]
 gi|227187595|gb|EEI67662.1| LuxR family response regulator [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239526491|gb|EEQ65492.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439117|gb|ADK18883.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382696|gb|AEA54172.1| two component transcriptional regulator, LuxR family [Lactobacillus
           casei LC2W]
 gi|327385883|gb|AEA57357.1| two component transcriptional regulator, LuxR family [Lactobacillus
           casei BD-II]
          Length = 221

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA+++ 
Sbjct: 146 ELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHG 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|117928967|ref|YP_873518.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649430|gb|ABK53532.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 303

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 170 ANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           A++ K  D  H     +LT RE+E L  +++G  + +IA  L IS NTV N++ +I+ K 
Sbjct: 223 ASLIKRGDARHQVPAPKLTEREMEVLRLVAKGLNNRDIAKQLFISENTVKNHVRNILEKL 282

Query: 229 ATKTRSGAIAYAVRNNIV 246
              +R  A+ YAVR  ++
Sbjct: 283 QLHSRMEAVVYAVREKLL 300


>gi|224552984|gb|ACN54742.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           ++R   +G L          Y  H+  K+  L+ RE + L W+  GKT  E+AVIL I+ 
Sbjct: 117 KNRSEIVGFLVNLHQKTLNLYSQHYQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAE 176

Query: 215 NTVNNYIASIMRKTATKTRSGAI 237
            TV  ++ ++M+K      + A+
Sbjct: 177 RTVKFHMGNVMKKLGVNNATHAV 199


>gi|222087763|ref|YP_002546300.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725211|gb|ACM28367.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 246

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  ++EG TS +I+  L IS +TV+ Y+ SI  K   + R   +A A RN 
Sbjct: 184 KLTRREIEVLNHLAEGMTSMDISRTLKISNHTVDWYMNSIQDKLNARNRQHIVAIAFRNG 243

Query: 245 IV 246
           +V
Sbjct: 244 LV 245


>gi|78213914|ref|YP_382693.1| LuxR family transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198373|gb|ABB36138.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9605]
          Length = 92

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 40/61 (65%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ 
Sbjct: 11  EISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 70

Query: 243 N 243
           N
Sbjct: 71  N 71


>gi|90422223|ref|YP_530593.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104237|gb|ABD86274.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB18]
          Length = 245

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E + W + GKT+ + A IL IS +TVN ++AS MRK    T++ A+  ++R  
Sbjct: 183 LSPREREVVAWAAVGKTAWDTARILAISTDTVNKHMASAMRKLDACTKTQAVVESIRRG 241


>gi|269963001|ref|ZP_06177338.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832244|gb|EEZ86366.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 217

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ LT + +G ++ +IA  L +S +TV +++ SI RK   K R  A+A+A R
Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKR 214

Query: 243 N 243
           N
Sbjct: 215 N 215


>gi|158317584|ref|YP_001510092.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112989|gb|ABW15186.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+ YAVR  +
Sbjct: 174 LTDREMEVLRLVAKGLNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 233

Query: 246 V 246
           +
Sbjct: 234 L 234


>gi|30261536|ref|NP_843913.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42780637|ref|NP_977884.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47526732|ref|YP_018081.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184365|ref|YP_027617.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481072|ref|YP_035656.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65318804|ref|ZP_00391763.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|118476998|ref|YP_894149.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|163939354|ref|YP_001644238.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|165872654|ref|ZP_02217284.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634292|ref|ZP_02392613.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641615|ref|ZP_02399861.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170706386|ref|ZP_02896847.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651401|ref|ZP_02934190.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568032|ref|ZP_03020942.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036887|ref|ZP_03104273.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196047716|ref|ZP_03114919.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206978391|ref|ZP_03239262.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959016|ref|YP_002337564.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095172|ref|YP_002529232.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225863403|ref|YP_002748781.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227815714|ref|YP_002815723.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229599953|ref|YP_002865949.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682399|ref|ZP_05146260.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721216|ref|ZP_05183006.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254733815|ref|ZP_05191529.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740493|ref|ZP_05198184.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753884|ref|ZP_05205919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758979|ref|ZP_05211006.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118514|ref|ZP_07056253.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301053077|ref|YP_003791288.1| response regulator [Bacillus anthracis CI]
 gi|30255390|gb|AAP25399.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42736557|gb|AAS40492.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47501880|gb|AAT30556.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178292|gb|AAT53668.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49332628|gb|AAT63274.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118416223|gb|ABK84642.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|163861551|gb|ABY42610.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
 gi|164711598|gb|EDR17145.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510408|gb|EDR85808.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530180|gb|EDR92906.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128920|gb|EDS97786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172082679|gb|EDT67742.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560766|gb|EDV14741.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990509|gb|EDX54491.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196021466|gb|EDX60170.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206743396|gb|EDZ54832.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065203|gb|ACJ79453.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239230|gb|ACM11940.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225787204|gb|ACO27421.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227006221|gb|ACP15964.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229264361|gb|ACQ45998.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724038|gb|EFI64741.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300375246|gb|ADK04150.1| response regulator [Bacillus cereus biovar anthracis str. CI]
 gi|324325555|gb|ADY20815.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 148 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|326943150|gb|AEA19046.1| two-component response regulator YocG [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 200

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA +L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|302337778|ref|YP_003802984.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634963|gb|ADK80390.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM
           11293]
          Length = 264

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            + KD+ L+ RE E    + +GKT+ EI   L IS  TV  +IASI RKT  + R+
Sbjct: 200 EFAKDYALSPRETEITALLLQGKTNAEICQSLFISLATVKTHIASIFRKTGARNRT 255


>gi|299531690|ref|ZP_07045095.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
 gi|298720406|gb|EFI61358.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
          Length = 228

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K FE LT RE++ L  I++GKT+ EI+  L IS  TV  ++ +I  K   +TR+ A+ YA
Sbjct: 163 KKFESLTEREIDILKLIAQGKTTQEISSYLEISPLTVATHVKNIYGKMQVRTRAQAVRYA 222

Query: 241 VRNNIV 246
           +   I+
Sbjct: 223 MLTGII 228


>gi|258539885|ref|YP_003174384.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|257151561|emb|CAR90533.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 221

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA+++ 
Sbjct: 146 ELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHG 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|171912672|ref|ZP_02928142.1| two-component response regulator [Verrucomicrobium spinosum DSM
           4136]
          Length = 210

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E + RE E L  +++G+++ EIA +LG+S  TV  ++++++ K   + R+ A+  A+R  
Sbjct: 147 EPSPREREVLAQMAKGRSNKEIASVLGLSEETVKRHVSNVLEKLGAQDRTQAVTEAIRRG 206

Query: 245 IV 246
           ++
Sbjct: 207 LL 208


>gi|94971316|ref|YP_593364.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553366|gb|ABF43290.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 218

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG +  EIAV+LG+S  TV  +  ++MRK     ++  + YA++  I
Sbjct: 152 LTPREREILKLLAEGNSVKEIAVLLGLSVKTVEAHKFNLMRKLDIHNKAQLVTYAIQKKI 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|170689229|ref|ZP_02880425.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170666784|gb|EDT17551.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 210

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 148 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|27367916|ref|NP_763443.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
 gi|27359489|gb|AAO08433.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
          Length = 210

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D ELT RE++ L ++  G ++ EIA  L IS +T+ +++ +I RK   K R+ A A+A R
Sbjct: 149 DIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKR 208

Query: 243 N 243
           N
Sbjct: 209 N 209


>gi|152974963|ref|YP_001374480.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152023715|gb|ABS21485.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 210

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 148 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|260436694|ref|ZP_05790664.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109]
 gi|260414568|gb|EEX07864.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109]
          Length = 92

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 40/61 (65%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ 
Sbjct: 11  EISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 70

Query: 243 N 243
           N
Sbjct: 71  N 71


>gi|218902648|ref|YP_002450482.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218535833|gb|ACK88231.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 210

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 148 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|14586749|gb|AAK70347.1|AF333002_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           cepacia]
          Length = 239

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 177 TAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236


>gi|293608422|ref|ZP_06690725.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828995|gb|EFF87357.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 319

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  I  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310


>gi|228942499|ref|ZP_04105035.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975433|ref|ZP_04135988.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982066|ref|ZP_04142358.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228777604|gb|EEM25879.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784227|gb|EEM32251.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817182|gb|EEM63271.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 189

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA +L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|4103042|gb|AAD12726.1| transcriptional activator [Burkholderia cepacia]
          Length = 239

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTARDREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|199597190|ref|ZP_03210622.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258508705|ref|YP_003171456.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|199591994|gb|EDZ00069.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257148632|emb|CAR87605.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259650011|dbj|BAI42173.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 221

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA+++ 
Sbjct: 146 ELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHG 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|309792037|ref|ZP_07686513.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308225930|gb|EFO79682.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 234

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+ YA++
Sbjct: 158 LTSREIEILDCIARGLSNKEIANELSISGQTVKNHITSILSKLQVNDRTMAVIYAIK 214


>gi|229822282|ref|YP_002883808.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568195|gb|ACQ82046.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 216

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L A +A      D   G   ELT RE+E L  ++ G ++ EIA  L ++  TV N++++
Sbjct: 133 VLRAVRAGSVPLDDAAAGDVQELTSRELEILRLLAAGYSNREIAEALHLAEGTVKNHVST 192

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K  T+ R+ A+  A+ + ++
Sbjct: 193 VLLKLGTRDRTRAVLRALHHGLL 215


>gi|170743557|ref|YP_001772212.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168197831|gb|ACA19778.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46]
          Length = 245

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W ++GK+  EIA  +GIS +    ++ ++ RK  T +R+ A+A  +R  I
Sbjct: 184 LSPRERESLQWAADGKSDQEIADAMGISAHGAIRHLRAVRRKLGTTSRAHAVALGLRLGI 243

Query: 246 V 246
           +
Sbjct: 244 I 244


>gi|148655092|ref|YP_001275297.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148567202|gb|ABQ89347.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 242

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+ YA++  
Sbjct: 164 LTSREIEILDCIARGLSNKEIASQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRG 222


>gi|327190926|gb|EGE57980.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 305

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           F LT RE E L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 242 FSLTQRESEVLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|190893145|ref|YP_001979687.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190698424|gb|ACE92509.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 305

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           F LT RE E L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 242 FSLTQRESEVLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|289641016|ref|ZP_06473185.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289509136|gb|EFD30066.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 234

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+ YAVR  +
Sbjct: 171 LTDREMEVLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 230

Query: 246 V 246
           +
Sbjct: 231 L 231


>gi|37676043|ref|NP_936439.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|37200583|dbj|BAC96409.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
          Length = 219

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D ELT RE++ L ++  G ++ EIA  L IS +T+ +++ +I RK   K R+ A A+A R
Sbjct: 158 DIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKR 217

Query: 243 N 243
           N
Sbjct: 218 N 218


>gi|330961628|gb|EGH61888.1| regulatory protein, LuxR [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 77

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A
Sbjct: 17  LTQREIEVLKWSAEGKTAGDIAIILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71


>gi|316931698|ref|YP_004106680.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315599412|gb|ADU41947.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           DX-1]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+  +LT RE E L W ++GKT+ EI++IL I+  TV  ++    RK     R+ A+A A
Sbjct: 176 GRRNKLTARECEILQWAAQGKTAWEISMILCIAERTVKFHLIEAARKLDAANRTAAVAKA 235

Query: 241 VRNNIV 246
           +   ++
Sbjct: 236 LTLGLI 241


>gi|262204346|ref|YP_003275554.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087693|gb|ACY23661.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 213

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 40/60 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE +  I+EG ++ +IA  L +S +TV  +I  I+ KTA + R+  ++YA R+++
Sbjct: 153 LTEREVEVIALIAEGLSNQQIATRLVVSLSTVKTHINHILAKTACRDRAALVSYAFRHHL 212


>gi|163745782|ref|ZP_02153141.1| transcription regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380527|gb|EDQ04937.1| transcription regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 253

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +DF L+ REVE L WI+ GK++  IA ILGIS +TV+  +  I  K     R+ A
Sbjct: 181 RDFGLSPREVEVLEWIATGKSNGVIAEILGISPHTVDTIVRRIFAKLDVNDRTTA 235


>gi|310644345|ref|YP_003949104.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309249296|gb|ADO58863.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 240

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 11/139 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +        D    SL   +  +  G   + PK  G++I + R    L E G +
Sbjct: 99  VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAM 158

Query: 166 AAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A       K   V +  G++  LT RE E L  ++EGK++  I   L IS  TV N+++S
Sbjct: 159 AEGHT---KEAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSS 215

Query: 224 IMRKTATKTRSGAIAYAVR 242
           I++K     R+ A+  +++
Sbjct: 216 ILQKMEVDDRTQAVINSIK 234


>gi|239503588|ref|ZP_04662898.1| response regulator [Acinetobacter baumannii AB900]
          Length = 319

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  I  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310


>gi|190890350|ref|YP_001976892.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695629|gb|ACE89714.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 248

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 97/252 (38%), Gaps = 36/252 (14%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEY 55
           V+N  D  R   V+ + +RSDL  R+I +                  +    R+    E 
Sbjct: 8   VMNGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGLPAKQRLVCELEN 67

Query: 56  VGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
            G+S+  F     D + +  LD I  S  P        LS    +      P + F P  
Sbjct: 68  WGSSNAGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FAPFM 118

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII--LRDRLWEI-GLLAAYQA 170
             L + I P       +  L F V    +G   +   G  I    D + E+ G       
Sbjct: 119 TRLRDGILP-------FSGLAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMM 171

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++    +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +
Sbjct: 172 DLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDS 231

Query: 231 KTRSGAIAYAVR 242
             R  AIA A+R
Sbjct: 232 VNRIQAIAKAIR 243


>gi|218247412|ref|YP_002372783.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257061251|ref|YP_003139139.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167890|gb|ACK66627.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256591417|gb|ACV02304.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 210

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ +
Sbjct: 150 LSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|116622583|ref|YP_824739.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225745|gb|ABJ84454.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 210

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I  GK++ EIA +L +S NTV  + A+IM+       +  + YA+R  +
Sbjct: 147 LTTRELEVLQLIVHGKSNKEIAAVLSLSANTVAVHRANIMQTLGIHNTAELVVYAIRQGL 206

Query: 246 V 246
           V
Sbjct: 207 V 207


>gi|327405906|ref|YP_004346744.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327321414|gb|AEA45906.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 226

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +T ISEG T+  IA  L +S +T+N +  +IM K   K  +G + YAV+ N+
Sbjct: 153 LSERETEIITMISEGLTNIMIADSLCLSNHTINTHRKNIMAKLGVKNTAGIVIYAVKTNL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|322835285|ref|YP_004215311.1| LuxR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170486|gb|ADW76184.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602]
          Length = 251

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           + D L E+ LLA  +Q  +F  +D  +   +   L+ RE ECLTW +EG T+ EIA  L 
Sbjct: 155 IHDVLAELSLLALTFQECVFPLFDSSILTCRHVRLSKRERECLTWAAEGLTAKEIARKLN 214

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            S  TV  ++ +  RK     R  A+  A+ 
Sbjct: 215 RSIATVTLHLNTAARKLGASNRVQAVVRAMH 245


>gi|312876261|ref|ZP_07736247.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796907|gb|EFR13250.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 215

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE++ +  I++G ++ EIA +L IS  TV NYI+SI++K   + R+    Y  +N
Sbjct: 155 ELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQIAIYYYKN 213


>gi|297531030|ref|YP_003672305.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297254282|gb|ADI27728.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
          Length = 200

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT  E+  L  I+  KT+ EI   L IS+ TV ++++SI+RK   K+R+GA+  A R
Sbjct: 139 LTDMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILRKLHVKSRAGAVGKAFR 195


>gi|228914112|ref|ZP_04077732.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229155107|ref|ZP_04283220.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342]
 gi|228628392|gb|EEK85106.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342]
 gi|228845565|gb|EEM90596.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 204

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 142 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 201

Query: 245 I 245
           +
Sbjct: 202 L 202


>gi|52143908|ref|YP_082920.1| response regulator [Bacillus cereus E33L]
 gi|51977377|gb|AAU18927.1| response regulator [Bacillus cereus E33L]
          Length = 210

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 148 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|317121636|ref|YP_004101639.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315591616|gb|ADU50912.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 222

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I+ GK++ ++A  L IS  TV N+++ IM+K   + R+ A+ +A+R  +
Sbjct: 155 LSQRELEVLSRIARGKSTAQVARELYISPKTVRNHLSHIMQKLGVRDRTQAVLFALRVGL 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|226310364|ref|YP_002770258.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093312|dbj|BAH41754.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +S GK +D+IA  L IS  TV  +I  I++K   + R+ A+A A+R  
Sbjct: 173 QLTDRERDVLEQLSYGKRNDQIAQHLLISGGTVKTHIHRILQKMGVEDRTQAVAKAIRYK 232

Query: 245 IV 246
           IV
Sbjct: 233 IV 234


>gi|332525737|ref|ZP_08401884.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332109294|gb|EGJ10217.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 326

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            ELT RE E L W+ +GKT+ +I  ILG S  TV  ++  +  K   +TR+
Sbjct: 259 LELTAREAEVLYWVVQGKTNRDIGDILGTSHRTVTKHLEHVFEKLGVETRT 309


>gi|327193021|gb|EGE59933.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 306

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+R
Sbjct: 245 LSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 301


>gi|222084852|ref|YP_002543381.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722300|gb|ACM25456.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 248

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+R
Sbjct: 187 LSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243


>gi|239816122|ref|YP_002945032.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239802699|gb|ACS19766.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 302

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L+W+++GKT+ +I  ILG S  TVN ++  I  K   +TR
Sbjct: 243 LTPRETEVLSWLAKGKTNRDIGEILGTSPRTVNKHLEHIFEKLGVETR 290


>gi|239816173|ref|YP_002945083.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239802750|gb|ACS19817.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 262

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT RE E L +++ G  S EI+V LGIS  TVN +I +I +K    +R+ A++ A 
Sbjct: 198 REATLTAREREVLRFVARGCVSKEISVRLGISGQTVNAHIKNIYKKLHVHSRAQAVSLAT 257

Query: 242 RNN 244
              
Sbjct: 258 HTG 260


>gi|317404677|gb|EFV85070.1| hypothetical protein HMPREF0005_04072 [Achromobacter xylosoxidans
           C54]
          Length = 515

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  + +G   D IA  L +SRNTV N++A+I  K     RS AI +A    
Sbjct: 440 QLTAREREVLGLLCQGHDDDGIARQLRLSRNTVRNHVATIYSKIGVHRRSAAIVWARDRG 499

Query: 245 IV 246
           I 
Sbjct: 500 IT 501


>gi|312115398|ref|YP_004012994.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220527|gb|ADP71895.1| transcriptional regulator, LuxR family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 251

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E ++W +EGK+   IA ILG+S +TV  ++ ++ +K     R+ A   A+R+ +
Sbjct: 185 LTEREKEIMSWAAEGKSDSVIAEILGVSHSTVRFHMNNVFKKLNANERTLATVKAIRHGL 244

Query: 246 V 246
           +
Sbjct: 245 I 245


>gi|158340472|ref|YP_001521466.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158310713|gb|ABW32327.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  +++G T+ EIA    +S  TV N++++I+ +   + R+ A  YAV 
Sbjct: 152 DTPLTTRELEVLKLLAKGNTNKEIAKAFNLSEGTVKNHVSNILMRLGLRDRTQAAVYAVE 211

Query: 243 NNI 245
           + +
Sbjct: 212 HGL 214


>gi|228984618|ref|ZP_04144793.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775145|gb|EEM23536.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 204

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 142 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 201

Query: 245 I 245
           +
Sbjct: 202 L 202


>gi|228920248|ref|ZP_04083596.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228926569|ref|ZP_04089640.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229121079|ref|ZP_04250319.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201]
 gi|229138230|ref|ZP_04266826.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26]
 gi|229183733|ref|ZP_04310953.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1]
 gi|229195738|ref|ZP_04322500.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293]
 gi|228587744|gb|EEK45800.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293]
 gi|228599776|gb|EEK57376.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1]
 gi|228645262|gb|EEL01498.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26]
 gi|228662408|gb|EEL18008.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201]
 gi|228833157|gb|EEM78723.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228839447|gb|EEM84740.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 204

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 142 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 201

Query: 245 I 245
           +
Sbjct: 202 L 202


>gi|115360652|ref|YP_777789.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285980|gb|ABI91455.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 237

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 34/48 (70%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           D ELT REVE L W+++GKT+ EI++I+ IS  TVN ++ + + K  T
Sbjct: 173 DIELTDREVEVLKWVADGKTAAEISMIMLISVYTVNFHVKNAVTKLNT 220


>gi|47569107|ref|ZP_00239795.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|47554178|gb|EAL12541.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
          Length = 132

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 70  ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 129

Query: 245 I 245
           +
Sbjct: 130 L 130


>gi|108805421|ref|YP_645358.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766664|gb|ABG05546.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 232

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  ++ G+T+ EIA  L ISR T  +++ +I+RK     R+ A+A A
Sbjct: 161 ELTAREREVLVLMARGRTNPEIARELVISRGTAKSHVQNIIRKLGVSDRTQAVARA 216


>gi|253991535|ref|YP_003042891.1| transcriptional regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638413|emb|CAR67035.1| transcriptional regulator of sqaz gene cluster [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782985|emb|CAQ86150.1| putative transcriptional regulator [Photorhabdus asymbiotica]
          Length = 236

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 14/98 (14%)

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGR 189
           F VAR          +G I   + L + G+L        K+++    K+ +     L+ R
Sbjct: 128 FSVAR---------KEGPISHNEILNKAGMLGILANECIKTFNNLKNKEDKIIVPTLSTR 178

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           EVE + W  EGKTS EIA IL IS  TVN +I +IM K
Sbjct: 179 EVEVIRWTCEGKTSAEIANILDISTRTVNFHINNIMEK 216


>gi|156977745|ref|YP_001448651.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116]
 gi|156529339|gb|ABU74424.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116]
          Length = 217

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ LT + +G ++ +IA  L +S +TV +++ SI RK   K R  A+A+A R
Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKR 214

Query: 243 N 243
           N
Sbjct: 215 N 215


>gi|326326038|ref|YP_004250847.1| putative transcriptional activator protein solR-LuxR [Vibrio
           nigripulchritudo]
 gi|323669089|emb|CBJ93133.1| Putative transcriptional activator protein solR-LuxR [Vibrio
           nigripulchritudo]
          Length = 232

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE+E L W +EGKT+ E ++IL IS  TV  +I + ++K  T  ++ A+  AV
Sbjct: 171 LTPREIEILKWSAEGKTASETSMILSISERTVTFHITNAVKKLNTCNKTSAVIKAV 226


>gi|118592081|ref|ZP_01549475.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
 gi|118435377|gb|EAV42024.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
          Length = 257

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           W    +LTGRE + L  +SEGK   EIA+ L IS  TV +++ ++ +K+   +R+  +A
Sbjct: 190 WAARHQLTGREQDVLCLVSEGKRDREIALDLNISVTTVRSHLKAVFQKSGVTSRAELLA 248


>gi|320158186|ref|YP_004190564.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
 gi|319933498|gb|ADV88361.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
          Length = 214

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D ELT RE++ L ++  G ++ EIA  L IS +T+ +++ +I RK   K R+ A A+A R
Sbjct: 153 DIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKR 212

Query: 243 N 243
           N
Sbjct: 213 N 213


>gi|313902397|ref|ZP_07835800.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467328|gb|EFR62839.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 218

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++EG ++ EI   L IS  TV N+I SI RK     R+ A+ +A+R  
Sbjct: 156 LTRREFEVLQLVAEGVSNREIGQRLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREG 214


>gi|295402188|ref|ZP_06812146.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975779|gb|EFG51399.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 211

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE+     + EGKT+ EIA  L +S  TV N+I  I++K   + R+    YA++
Sbjct: 147 DIPLSPRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIK 206

Query: 243 NNI 245
           ++I
Sbjct: 207 HDI 209


>gi|255598987|ref|XP_002537125.1| conserved hypothetical protein [Ricinus communis]
 gi|223517394|gb|EEF25258.1| conserved hypothetical protein [Ricinus communis]
          Length = 277

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 41/66 (62%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+ RE+E L W+  GKT+ EI  I+ +S  T+ N++ +I+RK   + RS A + A
Sbjct: 208 GRIKPLSKRELEVLEWLQAGKTNWEIGNIMQVSPLTIKNHVQNILRKLDVENRSQAASKA 267

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 268 LKLGLI 273


>gi|332527516|ref|ZP_08403568.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332111923|gb|EGJ11901.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 214

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE E L  +++G T  EI V LG+SR+T+ +Y+  I RK    +R+ A   A R
Sbjct: 152 QLTDRESEVLLRVAKGYTLPEIGVQLGLSRHTIADYVKQIYRKLNVSSRAEAALEAQR 209


>gi|311108335|ref|YP_003981188.1| sensory box protein 10 [Achromobacter xylosoxidans A8]
 gi|310763024|gb|ADP18473.1| sensory box protein 10 [Achromobacter xylosoxidans A8]
          Length = 497

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  + +G   D IA  L +SRNTV N++A+I  K     RS AI +A    
Sbjct: 422 QLTSREREVLGLMCQGHDDDSIARQLKLSRNTVRNHVATIYSKIGVHRRSAAIVWARDRG 481

Query: 245 IV 246
           I 
Sbjct: 482 IT 483


>gi|144899411|emb|CAM76275.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 189

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W ++GKT+ E + ILGIS  TV  ++ +  RK    T++  I  A R  +
Sbjct: 127 LTAREREVLLWAAQGKTAWETSAILGISSKTVEFHLGNCGRKLGAATKAQTILAAARRGL 186

Query: 246 V 246
           +
Sbjct: 187 L 187


>gi|57233907|ref|YP_182061.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224355|gb|AAW39412.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 225

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 180 WGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            GKD       LT R+ + LT I+ G T+ +IA  L IS  T+ N++++I+RK     R+
Sbjct: 152 LGKDASNFVTPLTNRKKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKLNANDRA 211

Query: 235 GAIAYAVR 242
            A+  A+R
Sbjct: 212 HAVVVAIR 219


>gi|75910715|ref|YP_325011.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75704440|gb|ABA24116.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 236

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+GRE+E L  + EG ++ EIA  L +S NTV  ++  IM K A   R  A   A
Sbjct: 171 GNTANLSGRELEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVA 230

Query: 241 VRNNIV 246
           +R+ +V
Sbjct: 231 LRSGLV 236


>gi|312888670|ref|ZP_07748238.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311298837|gb|EFQ75938.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 313

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            F+LT  E+  + +I +GK++ EIA ++ IS NTV  ++ ++ RK   K+R+ A+ Y ++
Sbjct: 248 HFDLTRTEILIIQYIYKGKSNKEIADLMSISENTVKKHLQNVYRKVNVKSRA-ALIYTLQ 306

Query: 243 NN 244
           N+
Sbjct: 307 NH 308


>gi|241205786|ref|YP_002976882.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859676|gb|ACS57343.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 241

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  +
Sbjct: 180 LSTRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|325121840|gb|ADY81363.1| response regulator receiver signal transduction histidine kinase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 319

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  I  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310


>gi|317122051|ref|YP_004102054.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315592031|gb|ADU51327.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 218

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++EG ++ EI   L IS  TV N+I SI RK     R+ A+ +A+R  
Sbjct: 156 LTRREFEVLQLVAEGVSNREIGQRLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREG 214


>gi|227820844|ref|YP_002824814.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227339843|gb|ACP24061.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 246

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G  A   A+M  + +    K   L+ RE+ CL    +G  S+EIA  +G+S +TVN Y+ 
Sbjct: 162 GRCAQVMADMLAADERRLFKGESLSDREIACLQMAGDGYISEEIAEKMGLSVHTVNAYLG 221

Query: 223 SIMRKTATKTRSGAIAYAVR 242
           +   K  +  R  AIA A+R
Sbjct: 222 AATTKLDSVNRIQAIAKAIR 241


>gi|126657363|ref|ZP_01728522.1| NarL subfamily protein [Cyanothece sp. CCY0110]
 gi|126621350|gb|EAZ92062.1| NarL subfamily protein [Cyanothece sp. CCY0110]
          Length = 210

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ +
Sbjct: 150 LSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|308071115|ref|YP_003872720.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305860394|gb|ADM72182.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa
           E681]
          Length = 240

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 11/139 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +        D    SL   +  +  G   + PK  G++I + R    L E G +
Sbjct: 99  VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAM 158

Query: 166 AAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A       K   V +  G++  LT RE E L  ++EGK++  I   L IS  TV N+++S
Sbjct: 159 AEGHT---KEAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSS 215

Query: 224 IMRKTATKTRSGAIAYAVR 242
           I++K     R+ A+  +++
Sbjct: 216 ILQKMEVDDRTQAVINSIK 234


>gi|312128575|ref|YP_003993449.1| LuxR family transcriptional regulator [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778594|gb|ADQ08080.1| transcriptional regulator, LuxR family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 68

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +L+ RE E +  I+EG T+ EIAVIL IS  TV  Y+ +IM K    +R   IA+  +N
Sbjct: 5   KLSYREREIVKLIAEGMTNKEIAVILNISEKTVKTYVKNIMLKLEVDSRYKIIAWYYKN 63


>gi|296447080|ref|ZP_06889013.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
 gi|296255425|gb|EFH02519.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
          Length = 306

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK F LT RE E ++WI+ GK++ +IA IL IS  TV+ ++  I  K    +RS A + A
Sbjct: 238 GK-FALTSREAEVVSWIARGKSNVDIAEILCISPRTVHKHLERIFIKLGVDSRSSATSVA 296

Query: 241 VR 242
           ++
Sbjct: 297 LQ 298


>gi|259046510|ref|ZP_05736911.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259036675|gb|EEW37930.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 211

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H+  D +LT RE+E L  I++GK++ EIA  L I+  TV  ++++I+ K   + R+ A  
Sbjct: 143 HFPHD-DLTQRELEVLLLIAQGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATI 201

Query: 239 YAVRNNIV 246
           YA ++ ++
Sbjct: 202 YAFKHQLI 209


>gi|312111451|ref|YP_003989767.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311216552|gb|ADP75156.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 211

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE+     + EGKT+ EIA  L +S  TV N+I  I++K   + R+    YA++
Sbjct: 147 DIPLSPRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIK 206

Query: 243 NNI 245
           ++I
Sbjct: 207 HDI 209


>gi|86356299|ref|YP_468191.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280401|gb|ABC89464.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 248

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+R
Sbjct: 187 LSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243


>gi|172037280|ref|YP_001803781.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698734|gb|ACB51715.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 247

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ +
Sbjct: 187 LSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 246

Query: 246 V 246
           V
Sbjct: 247 V 247


>gi|66044947|ref|YP_234788.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63255654|gb|AAY36750.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 36/52 (69%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++F +T RE E   W + GKT +EIAVIL IS+ TV+ +I++++ K   +T+
Sbjct: 174 ENFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTK 225


>gi|312196500|ref|YP_004016561.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227836|gb|ADP80691.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 229

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ E+A I  +S NTV +YI ++ RK    +RS A+ + 
Sbjct: 151 GRGEGLTEREAEVLALITQGRSNAELAEITCLSPNTVKSYIRTLYRKIGVTSRSQAVLWG 210

Query: 241 VRNN 244
           V + 
Sbjct: 211 VNHG 214


>gi|189218591|ref|YP_001939232.1| LuxR family transcriptional regulator [Methylacidiphilum infernorum
           V4]
 gi|189185449|gb|ACD82634.1| Transcriptional regulator LuxR family [Methylacidiphilum infernorum
           V4]
          Length = 251

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L WI +GKT+ EI+ IL IS  TV  ++ +I  K   + R  A+A A    +
Sbjct: 189 LTARELEILKWIMDGKTNWEISCILKISEATVKFHLKNIFLKLDVQNRCQAVATAFHRRL 248

Query: 246 V 246
           +
Sbjct: 249 L 249


>gi|153004251|ref|YP_001378576.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027824|gb|ABS25592.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 212

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G  AA + N   S     G+   LT RE E L  +++G ++ E+A  L IS  TV  + A
Sbjct: 130 GNAAAQERNTVVS---RGGRVTSLTQREREVLRLLAQGDSNREVAGQLSISAKTVETHRA 186

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++MRK    +    + YA+RN IV
Sbjct: 187 NVMRKLGASSIVDLVHYAIRNGIV 210


>gi|260362858|ref|ZP_05775727.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|260880146|ref|ZP_05892501.1| putative transcriptional regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|260895263|ref|ZP_05903759.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466]
 gi|308085787|gb|EFO35482.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466]
 gi|308092058|gb|EFO41753.1| putative transcriptional regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|308112231|gb|EFO49771.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030]
          Length = 214

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A R
Sbjct: 153 EVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 212

Query: 243 N 243
           N
Sbjct: 213 N 213


>gi|218514696|ref|ZP_03511536.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 240

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+R
Sbjct: 179 LSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 235


>gi|26988850|ref|NP_744275.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           KT2440]
 gi|24983655|gb|AAN67739.1|AE016405_2 DNA-binding response regulator, LuxR family [Pseudomonas putida
           KT2440]
          Length = 219

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +A
Sbjct: 150 GERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMKRLQIHDVAGLVLFA 209

Query: 241 VRNNIV 246
           VR  I+
Sbjct: 210 VREKII 215


>gi|15964401|ref|NP_384754.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307311543|ref|ZP_07591184.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318898|ref|ZP_07598329.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|3894103|emb|CAA11949.1| unnamed protein product [Sinorhizobium meliloti]
 gi|15073578|emb|CAC45220.1| Regulator of flagellar operons, LuxR family, probable forming a
           heterodimer with VisN [Sinorhizobium meliloti 1021]
 gi|306895312|gb|EFN26067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306899560|gb|EFN30189.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 246

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LLAA +  +FK+          L+ RE+ CL    +G  S+EIA  +G+S +TVN Y+ +
Sbjct: 171 LLAADEKRLFKAE--------ALSDREIACLQMAGDGHISEEIAEKMGLSVHTVNAYLGA 222

Query: 224 IMRKTATKTRSGAIAYAVR 242
              K  +  R  AIA A+R
Sbjct: 223 ATTKLDSVNRIQAIAKAIR 241


>gi|325264809|ref|ZP_08131538.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
 gi|324030101|gb|EGB91387.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
          Length = 198

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K  D+   K    T RE E   W+ +GK++ +IA IL +S +TV  ++++I      ++R
Sbjct: 117 KESDMKILKGHGFTEREAEVTYWLCQGKSNGDIAYILNLSVSTVKKHLSNIFDNMGVRSR 176

Query: 234 SGAIAYAVR 242
           S A+A A+ 
Sbjct: 177 SAAVALALE 185


>gi|293607167|ref|ZP_06689509.1| LuxR family sensory box transcriptional regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292814501|gb|EFF73640.1| LuxR family sensory box transcriptional regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 508

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  + +G   D IA  L +SRNTV N++A+I  K     RS AI +A    
Sbjct: 433 QLTTREREVLGLLCQGHDDDGIAKALKLSRNTVRNHVATIYSKIGVHRRSAAIVWARDRG 492

Query: 245 IV 246
           I 
Sbjct: 493 IT 494


>gi|261419001|ref|YP_003252683.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765817|ref|YP_004131318.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375458|gb|ACX78201.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317110683|gb|ADU93175.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 200

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT  E+  L  I+  KT+ EI   L IS+ TV ++++SI+RK   K+R+GA+  A R
Sbjct: 139 LTEMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILRKLHVKSRAGAVGKAFR 195


>gi|330975157|gb|EGH75223.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 95

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 36/52 (69%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++F +T RE E   W + GKT +EIAVIL IS+ TV+ +I++++ K   +T+
Sbjct: 31  ENFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTK 82


>gi|228900120|ref|ZP_04064353.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL
           4222]
 gi|228859526|gb|EEN03953.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL
           4222]
          Length = 199

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 137 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 196

Query: 245 I 245
           +
Sbjct: 197 L 197


>gi|229074728|ref|ZP_04207749.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18]
 gi|228708471|gb|EEL60623.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18]
          Length = 199

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 137 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 196

Query: 245 I 245
           +
Sbjct: 197 L 197


>gi|213970237|ref|ZP_03398368.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213925118|gb|EEB58682.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 185

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK-TATKTRSGAIAYAV 241
           +L+ REVE L W+++GKT + I  +LG++  TV ++  +IM+K  AT   + A+  A+
Sbjct: 124 KLSTREVEVLKWVADGKTGEVIGKVLGVTERTVTHHTVNIMQKLNATNKTAAAVKAAL 181


>gi|298246526|ref|ZP_06970332.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554007|gb|EFH87872.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 228

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +LT RE+E LT ++ G+ + EIA  L IS  TV  ++A+I  K    +R+ A+A A
Sbjct: 158 AQRVDLTERELEVLTCVARGQRNKEIATYLSISEPTVKTHLANIYFKLQVDSRASAVAVA 217

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 218 MKRGLL 223


>gi|86158419|ref|YP_465204.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774930|gb|ABC81767.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 218

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 13/104 (12%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G ++L P+   + R  + E G  A  +A+ ++S          LT RE + L  ++EG++
Sbjct: 124 GGLVLDPE---VARTAMEEAGPAAPGEADPYES----------LTDREKQVLKLVAEGRS 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + E+A +LGIS  T  ++   +M K     R+  + +A+R  ++
Sbjct: 171 NKEVADVLGISVKTAMSHREHVMEKLGVHNRTELVRFAIRKGVI 214


>gi|28901301|ref|NP_800956.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835889|ref|ZP_01988556.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|260900615|ref|ZP_05909010.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|28809814|dbj|BAC62789.1| putative transcriptional regulator, LuxR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149750643|gb|EDM61388.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|308106917|gb|EFO44457.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|328469239|gb|EGF40185.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 218

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A R
Sbjct: 157 EVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 216

Query: 243 N 243
           N
Sbjct: 217 N 217


>gi|254442908|ref|ZP_05056384.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257216|gb|EDY81524.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 200

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++ +S D    +   LT RE E LT+I+ G ++ +IA+ LG+S  T++N+  S+MRK   
Sbjct: 119 SVVRSIDRSSERTDNLTAREREVLTFIASGNSNKDIALKLGLSVKTIDNHRCSMMRKLDL 178

Query: 231 KTRSGAIAYAVRNNIV 246
              +    YAV + IV
Sbjct: 179 HNVADITRYAVEHRIV 194


>gi|148548821|ref|YP_001268923.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148512879|gb|ABQ79739.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
          Length = 219

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +A
Sbjct: 150 GERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMKRLQIHDVAGLVLFA 209

Query: 241 VRNNIV 246
           VR  I+
Sbjct: 210 VREKII 215


>gi|330973646|gb|EGH73712.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 237

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 36/52 (69%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++F +T RE E   W + GKT +EIAVIL IS+ TV+ +I++++ K   +T+
Sbjct: 173 ENFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTK 224


>gi|238786137|ref|ZP_04630091.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
 gi|238712965|gb|EEQ05023.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
          Length = 245

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 13/145 (8%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           YN++   T +     H +          D+ Y   + ++ + +I ++L+    +      
Sbjct: 104 YNIINGYTFVLHDNNHNMATLNISNGNDDSIYFDESIEINKEKIQMLLILTHDK------ 157

Query: 159 LWEIGLLAAYQANMFKSYDV-HWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNT 216
                +L  YQ N  ++ ++     + E+ + RE E L W S GKT  EIA+ILGI R+T
Sbjct: 158 -----MLGLYQKNNNENKELGRSAAEREIFSPRENEILYWASVGKTYSEIAIILGIKRST 212

Query: 217 VNNYIASIMRKTATKTRSGAIAYAV 241
           V  +I +++RK        AI   +
Sbjct: 213 VKFHIGNVVRKLGVLNAKHAIRLGI 237


>gi|271965882|ref|YP_003340078.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509057|gb|ACZ87335.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 219

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R  +
Sbjct: 158 LTPRELEVLRLIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRRGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|237808386|ref|YP_002892826.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
 gi|237500647|gb|ACQ93240.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
          Length = 298

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT RE + L W+S GKT+ EIA IL +S  TVN ++  I +K     R+ A + ++
Sbjct: 235 RELNLTKRESQVLYWLSFGKTNWEIATILEMSPRTVNKHLEQIYKKLNVDNRTAAASISL 294

Query: 242 R 242
           R
Sbjct: 295 R 295


>gi|307151762|ref|YP_003887146.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306981990|gb|ADN13871.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 210

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ +
Sbjct: 150 LSERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|4928929|gb|AAD33777.1|AF139177_4 putative two component response regulator [Streptomyces lividans]
          Length = 199

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G +  LT RE+  LT  S+G    EIA  L +SR TV NY+A+ +RK   + R  AI
Sbjct: 134 GAEMPLTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 190


>gi|224552975|gb|ACN54736.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNVFLSPRECQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|197122287|ref|YP_002134238.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220917070|ref|YP_002492374.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196172136|gb|ACG73109.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
 gi|219954924|gb|ACL65308.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 218

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 13/104 (12%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G ++L P+   + R  + E G  A  +A+ ++S          LT RE + L  ++EG++
Sbjct: 124 GGLVLDPE---VARTAMEEAGPAAPGEADPYES----------LTDREKQVLKLVAEGRS 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + E+A +LGIS  T  ++   +M K     R+  + +A+R  ++
Sbjct: 171 NKEVADVLGISVKTAMSHREHVMEKLGVHNRTELVRFAIRKGVI 214


>gi|325570549|ref|ZP_08146275.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156395|gb|EGC68575.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus
           ATCC 12755]
          Length = 202

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGR-EVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             Y  N      +   KD  L    E + L  IS+ +T+++IA  L ISR TV N+++SI
Sbjct: 120 TVYHGNKVSPEHLFLEKDMRLLSEIERQVLELISQEQTNEKIAKKLFISRRTVENHVSSI 179

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K   +TR GA+   ++ N++
Sbjct: 180 CNKLNVQTRIGAVREGIKLNLI 201


>gi|289679330|ref|ZP_06500220.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
 gi|330901245|gb|EGH32664.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 237

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 36/52 (69%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++F +T RE E   W + GKT +EIAVIL IS+ TV+ +I++++ K   +T+
Sbjct: 173 ENFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTK 224


>gi|167589289|ref|ZP_02381677.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 229

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K     ++ A+  A 
Sbjct: 168 LTDREVEVLKWAADGKTSGEISTILVISVDTVNFHVKNAVSKLKAANKTSAVVRAT 223


>gi|256392814|ref|YP_003114378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256359040|gb|ACU72537.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 525

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  ++ G ++ EIA  L ISR TV++++  I  KT T  R+ A  YAVR+ +
Sbjct: 462 LTRREVQVLRLLARGLSNGEIAEQLVISRKTVSHHVEHIYAKTGTANRAMAGLYAVRHGL 521

Query: 246 V 246
           +
Sbjct: 522 M 522


>gi|228932822|ref|ZP_04095692.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945136|ref|ZP_04107496.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229010843|ref|ZP_04168040.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048]
 gi|229016795|ref|ZP_04173725.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273]
 gi|229023000|ref|ZP_04179517.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272]
 gi|229058174|ref|ZP_04196563.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603]
 gi|229090494|ref|ZP_04221732.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42]
 gi|229096030|ref|ZP_04227005.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29]
 gi|229102142|ref|ZP_04232853.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28]
 gi|229114984|ref|ZP_04244396.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3]
 gi|229132346|ref|ZP_04261200.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196]
 gi|229160490|ref|ZP_04288485.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803]
 gi|229166381|ref|ZP_04294138.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621]
 gi|228617123|gb|EEK74191.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621]
 gi|228622900|gb|EEK79731.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803]
 gi|228651052|gb|EEL07033.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196]
 gi|228668496|gb|EEL23926.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3]
 gi|228681342|gb|EEL35508.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28]
 gi|228687415|gb|EEL41318.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29]
 gi|228692844|gb|EEL46565.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42]
 gi|228720139|gb|EEL71721.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603]
 gi|228738306|gb|EEL88785.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272]
 gi|228744531|gb|EEL94603.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273]
 gi|228750517|gb|EEM00346.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048]
 gi|228814580|gb|EEM60841.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826872|gb|EEM72636.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 196

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 134 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 193

Query: 245 I 245
           +
Sbjct: 194 L 194


>gi|297489|emb|CAA68561.1| luxR [Aliivibrio fischeri]
          Length = 250

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE ECL W  EGK+S +I+ ILG S  TV  ++ +   K  T  R  +I+ A+
Sbjct: 182 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAI 238


>gi|158312391|ref|YP_001504899.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158107796|gb|ABW09993.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 219

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++EG+++ EIA +L +S  TV  ++  I+ K   + R+ A+ +A R  
Sbjct: 151 QLTDREAEVLRALAEGRSNTEIAAVLNLSVETVRTHVKRILSKLGVRDRTQAVVWAYRAG 210

Query: 245 IV 246
            V
Sbjct: 211 FV 212


>gi|324326299|gb|ADY21559.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 216

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  I++G+++ EIA +L I+  TV  ++++I+ K     R+ A  YAV++
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNILAKLEVDDRTQAALYAVKH 208


>gi|239833383|ref|ZP_04681711.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239821446|gb|EEQ93015.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 233

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+ RE E L  I  G+ + EIA  LG+S +TV++Y+ +I +K +  +R+ A   A
Sbjct: 165 GEFIHLSRRETEVLKEIGTGQRNGEIARKLGLSEHTVSDYVKAIYQKLSVSSRAEATREA 224

Query: 241 VRNNIV 246
           +R  +V
Sbjct: 225 IRRGLV 230


>gi|312623477|ref|YP_004025090.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203944|gb|ADQ47271.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 211

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 165 LAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +A Y +++ K +   ++ K   LT RE+E    IS+G ++ EIA +L IS  TV NYI S
Sbjct: 130 IALYISDVLKRTSKQYFEKTQNLTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITS 189

Query: 224 IMRKTATKTRSGAIAY 239
           I++K   K R+    Y
Sbjct: 190 ILQKLNLKNRTQIAVY 205


>gi|33866798|ref|NP_898357.1| transcriptional regulator [Synechococcus sp. WH 8102]
 gi|33639399|emb|CAE08783.1| possible transcriptional regulator [Synechococcus sp. WH 8102]
          Length = 91

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 40/61 (65%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ 
Sbjct: 11  NISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 70

Query: 243 N 243
           N
Sbjct: 71  N 71


>gi|264677605|ref|YP_003277511.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262208117|gb|ACY32215.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 195

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++GK + EI   + IS  TV+ ++ +I RK   +TR+ A+ YAV   
Sbjct: 134 KLTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLKG 193

Query: 245 IV 246
           I+
Sbjct: 194 II 195


>gi|260437679|ref|ZP_05791495.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM
           2876]
 gi|292809905|gb|EFF69110.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM
           2876]
          Length = 218

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+E L  IS+G  + +I+  L I+  TV N+++SI RK     R+ A  +AV+N
Sbjct: 151 LTKREIEVLLLISKGYVNKDISNELKITERTVKNHVSSIFRKINVNDRTQAAVFAVKN 208


>gi|256783866|ref|ZP_05522297.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 194

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G +  LT RE+  LT  S+G    EIA  L +SR TV NY+A+ +RK   + R  AI
Sbjct: 129 GAEMPLTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 185


>gi|312172015|emb|CBX80272.1| Transcriptional activator protein ExpR [Erwinia amylovora ATCC
           BAA-2158]
          Length = 240

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           RE+E L W +EGKTS EI++IL IS+NTVN +   + ++     ++   +YA 
Sbjct: 183 RELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAA 235


>gi|298250569|ref|ZP_06974373.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548573|gb|EFH82440.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 222

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ++ G+ S EIA  LGIS  TV +++ SI  K    +R+ A+A  +   
Sbjct: 159 ELTERECEVLEAVARGERSKEIASRLGISLRTVGSHLTSIYSKLGVDSRASAVATGIERG 218

Query: 245 IV 246
           ++
Sbjct: 219 LL 220


>gi|59714108|ref|YP_206883.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio
           fischeri ES114]
 gi|462557|sp|P35327|LUXS_VIBF1 RecName: Full=Transcriptional activator protein luxR
 gi|295436|gb|AAA27542.1| putative [Vibrio fischeri ES114]
 gi|59482356|gb|AAW87995.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio
           fischeri ES114]
          Length = 250

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D  LT RE ECL W SEGK++ +I+ ILG S  TV  ++ +   K  T  R  +I+ A+
Sbjct: 180 DSILTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNRCQSISKAI 238


>gi|317129617|ref|YP_004095899.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474565|gb|ADU31168.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 207

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  ELT RE E L  I +GKT+ +IA  L I   TV  +++ I+ K   + R+ A  YA 
Sbjct: 143 KHEELTNREREVLALIGQGKTNKDIAETLHIGIKTVKTHVSHILSKLEVEDRTQAAIYAN 202

Query: 242 RNNI 245
           +N +
Sbjct: 203 KNKL 206


>gi|197337087|ref|YP_002158591.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11]
 gi|197314339|gb|ACH63788.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11]
          Length = 252

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE ECL W  EGK+S +I+ ILG S  TV  ++ +   K  T  R  +I+ A+
Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAI 240


>gi|158339385|ref|YP_001520562.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158309626|gb|ABW31243.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 208

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE+E L  +S+G ++ EIA  L IS  TV  +I +I+ K   K R+ A+  A++
Sbjct: 142 DSDLTERELEVLQLLSKGNSNQEIAAALTISEGTVKFHINNILSKLGVKDRTQAVIMALK 201

Query: 243 NNI 245
             +
Sbjct: 202 KGL 204


>gi|462556|sp|P12746|LUXR_VIBFI RecName: Full=Transcriptional activator protein luxR
 gi|5726578|gb|AAD48473.1|AF170104_1 regulatory protein LuxR [Aliivibrio fischeri]
 gi|155231|gb|AAA27540.1| luxR protein [Aliivibrio fischeri]
 gi|59800242|gb|AAX07424.1| LuxR [Expression vector pLuxR-wt]
 gi|59800247|gb|AAX07428.1| LuxR-mut [Expression vector pHTSUB-105]
 gi|60594754|gb|AAX29978.1| LuxR [Cloning vector pHTSUB-106]
          Length = 250

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE ECL W  EGK+S +I+ ILG S  TV  ++ +   K  T  R  +I+ A+
Sbjct: 182 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAI 238


>gi|239831035|ref|ZP_04679364.1| Transcriptional activator protein solR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823302|gb|EEQ94870.1| Transcriptional activator protein solR [Ochrobactrum intermedium
           LMG 3301]
          Length = 238

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 175 EVNLTMREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232


>gi|166364716|ref|YP_001656989.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|159030578|emb|CAO88241.1| luxR [Microcystis aeruginosa PCC 7806]
 gi|166087089|dbj|BAG01797.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 210

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I EGK++ EIA  L +S NT+  ++  IM K A   R  A   A+R+ I
Sbjct: 150 LSEREMEVLKLIVEGKSNAEIAEQLYLSTNTIKTHVRGIMNKLAVDDRVQAAVIALRSGI 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|289767748|ref|ZP_06527126.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289697947|gb|EFD65376.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 202

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G +  LT RE+  LT  S+G    EIA  L +SR TV NY+A+ +RK   + R  AI
Sbjct: 137 GAEMPLTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 193


>gi|311898779|dbj|BAJ31187.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 234

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  L +S  TV  +I ++  KTA + R+ A+AYA R+ I
Sbjct: 171 LTQREAEVLALIAAGLSNAEIAERLFVSPATVKTHINNLFAKTAVRDRAQAVAYAFRHGI 230


>gi|169796310|ref|YP_001714103.1| putative two-component response regulator protein [Acinetobacter
           baumannii AYE]
 gi|213156954|ref|YP_002318999.1| two component transcriptional regulator, LuxR family [Acinetobacter
           baumannii AB0057]
 gi|215483769|ref|YP_002325994.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|301344835|ref|ZP_07225576.1| response regulator [Acinetobacter baumannii AB056]
 gi|301513697|ref|ZP_07238934.1| response regulator [Acinetobacter baumannii AB058]
 gi|301596924|ref|ZP_07241932.1| response regulator [Acinetobacter baumannii AB059]
 gi|332851608|ref|ZP_08433557.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332866495|ref|ZP_08437037.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169149237|emb|CAM87119.1| putative two-component response regulator protein [Acinetobacter
           baumannii AYE]
 gi|213056114|gb|ACJ41016.1| two component transcriptional regulator, LuxR family [Acinetobacter
           baumannii AB0057]
 gi|213988921|gb|ACJ59220.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|332729836|gb|EGJ61170.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332734574|gb|EGJ65683.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 319

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|117620077|ref|YP_855658.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561484|gb|ABK38432.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 264

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E   W +EGK   +IA ILGI+  TV  ++ +++ K    ++S AI++A++  +
Sbjct: 188 LSLRELEVCRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGM 247

Query: 246 V 246
           V
Sbjct: 248 V 248


>gi|315646683|ref|ZP_07899799.1| two-component response regulator yhcZ [Paenibacillus vortex V453]
 gi|315277889|gb|EFU41212.1| two-component response regulator yhcZ [Paenibacillus vortex V453]
          Length = 213

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE   L  I+ G+++ EIAV L I+  TV  +I  I+ K   + R+ A  YA+RN+
Sbjct: 151 LTKREQHVLEQITMGRSNKEIAVELHITEKTVKTHITHILGKMEVQDRTQAALYAIRNH 209


>gi|222149994|ref|YP_002550951.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736976|gb|ACM37939.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 251

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+R
Sbjct: 190 LSDREIACLQLAGDGRISEEIAENLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 246


>gi|317127430|ref|YP_004093712.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472378|gb|ADU28981.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 211

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 41/64 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE++ +  I EG+++ EIA+ L +S  TV N+I+ I+ K   + R+    YA++
Sbjct: 148 DPSLTPRELDIIRKIGEGRSNKEIAMQLSLSVGTVKNHISIILDKLELRDRTQIAIYAIK 207

Query: 243 NNIV 246
           +++V
Sbjct: 208 HHVV 211


>gi|70726115|ref|YP_253029.1| hypothetical protein SH1114 [Staphylococcus haemolyticus JCSC1435]
 gi|68446839|dbj|BAE04423.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 207

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K +   R+ A  YA+ N 
Sbjct: 146 KLSKREIEVLAEMVKGKTNKEIANTLFVSEKTIKTHVSHIFNKLSVTDRTQAAIYAIENK 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|9297032|sp|O30919|SOLR2_RALSO RecName: Full=Transcriptional activator protein solR
 gi|2444467|gb|AAC45947.1| SolR [Ralstonia solanacearum]
          Length = 236

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   +
Sbjct: 176 LTTREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624]
          Length = 319

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|219668814|ref|YP_002459249.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219539074|gb|ACL20813.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 212

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ LT++ +G ++ EI   L IS  TV N+++SI RK A + R+ A   AV+  +
Sbjct: 149 LSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLKL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|76819232|ref|YP_337020.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1710b]
 gi|76583705|gb|ABA53179.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710b]
          Length = 394

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    
Sbjct: 333 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 392

Query: 245 IV 246
           ++
Sbjct: 393 LI 394


>gi|75674825|ref|YP_317246.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74419695|gb|ABA03894.1| Transcriptional regulatory protein, LuxR family [Nitrobacter
           winogradskyi Nb-255]
          Length = 241

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 8/95 (8%)

Query: 154 ILRDRLWEIGLLAAYQA--NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           ILR +L  I + A  +A    +K   V+      LT RE++ L W++EGK+  EI+VIL 
Sbjct: 152 ILRGQLQLIAMYAFARALGQKYKPAPVN------LTPREMDILQWMAEGKSDWEISVILK 205

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S + V+     +  K     R+  +A A+R+N++
Sbjct: 206 VSEHLVDKIARQLRAKLNATNRTQTVAVALRHNLI 240


>gi|46199289|ref|YP_004956.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55981321|ref|YP_144618.1| response regulator [Thermus thermophilus HB8]
 gi|46196914|gb|AAS81329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55772734|dbj|BAD71175.1| response regulator [Thermus thermophilus HB8]
          Length = 215

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ REV+ L  +++G T+ EIA  L +S  TV N ++ I +K     R+ A  YA+R  
Sbjct: 150 ELSEREVQILRLVAQGYTNQEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREG 209

Query: 245 IV 246
           + 
Sbjct: 210 LA 211


>gi|32141311|ref|NP_733711.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|432994|gb|AAA21390.1| potential response regulator for aerial mycelium production
           [Streptomyces coelicolor A3(2)]
 gi|24413915|emb|CAD55386.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 202

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G +  LT RE+  LT  S+G    EIA  L +SR TV NY+A+ +RK   + R  AI
Sbjct: 137 GAEMPLTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 193


>gi|325277395|ref|ZP_08143015.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097468|gb|EGB95694.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 242

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 16/151 (10%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           EK + Y V++RP        H L   +  P G++    +++   ARI        P+ R+
Sbjct: 101 EKGERYRVVRRPAGAG---VHGLQLPVFGPQGLEG---AMSLGGARIDSS-----PEARL 149

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L      +   AA+                +L+ RE E L W + G    +IA  LG+S
Sbjct: 150 ML-----AMVATAAFHTARRLLQPPLAASATQLSAREREVLRWTAAGSRQADIAATLGLS 204

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             TV N++ +  R+    T + AI  A+ N 
Sbjct: 205 ERTVENHLRAARRRLGVATTAQAIKIALHNG 235


>gi|260555377|ref|ZP_05827598.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411919|gb|EEX05216.1| response regulator [Acinetobacter baumannii ATCC 19606]
          Length = 319

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|254819425|ref|ZP_05224426.1| two-component system response regulator [Mycobacterium
           intracellulare ATCC 13950]
          Length = 218

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ LT I +G ++ EIA  L IS  TV ++I  I  K   + R+ AI YA  N 
Sbjct: 154 ELTTRELDVLTLIGQGLSNTEIAGKLCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNG 213

Query: 245 IV 246
           IV
Sbjct: 214 IV 215


>gi|218515979|ref|ZP_03512819.1| probable two-component response regulator protein [Rhizobium etli
           8C-3]
          Length = 209

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           F LT RE E L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 146 FSLTQRESEVLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 202


>gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1]
 gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1]
          Length = 319

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|238064601|ref|ZP_04609310.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237886412|gb|EEP75240.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 225

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           QA +  S  VH  +   LT RE E +  ++EG ++ +IA  LGIS +     +AS+M K 
Sbjct: 150 QARVELSTPVHPAR---LTARESEAMGLMAEGMSNKQIAGRLGISSHGAKRLVASLMLKL 206

Query: 229 ATKTRSGAIAYAVRNNIV 246
            +  R+ A+  A+++ +V
Sbjct: 207 GSPNRTAAVVNAIKSGLV 224


>gi|184157756|ref|YP_001846095.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332876442|ref|ZP_08444209.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183209350|gb|ACC56748.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|322508066|gb|ADX03520.1| Putative two-component response regulator protein [Acinetobacter
           baumannii 1656-2]
 gi|323517648|gb|ADX92029.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735300|gb|EGJ66360.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 319

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|254228707|ref|ZP_04922130.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262396571|ref|YP_003288424.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
 gi|151938654|gb|EDN57489.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262340165|gb|ACY53959.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
          Length = 210

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A R
Sbjct: 149 EVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWARR 208

Query: 243 N 243
           N
Sbjct: 209 N 209


>gi|111022239|ref|YP_705211.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821769|gb|ABG97053.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 226

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA Y+  +  S D       ELT RE++ L  I  G ++ EI   LGIS  TV +++  
Sbjct: 137 VLATYR-TVAPSSDGGRNHLTELTARELDVLALIGRGHSNSEIGRELGISGVTVKSHVGH 195

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K   + R+ AI YA  + IV
Sbjct: 196 IFLKLDLRDRAAAIVYAFDHGIV 218


>gi|299533172|ref|ZP_07046556.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
 gi|298718702|gb|EFI59675.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
          Length = 255

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 168 YQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           ++AN F    +   K FE LT REVE L  I++GK S E+A  L IS  TV+ +I +I  
Sbjct: 177 FKAN-FHEESIFKHKSFESLTEREVEILKLIAQGKNSLEVASYLQISPLTVSTHIKNIYG 235

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   +TR+ A+  A+   I+
Sbjct: 236 KMQVRTRAQAVRCAILIGII 255


>gi|298247251|ref|ZP_06971056.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297549910|gb|EFH83776.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 222

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 14/192 (7%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           E VG +   L    + + Q+ D I+  D    ++  +A +E+      L+RP  L    F
Sbjct: 32  ELVGEAENGLSALQIAESQEPDVILM-DIRMPVLDGIAATER-VLQQALKRPRILLLTTF 89

Query: 114 HTLPENITPP--AGMDN---RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
            T PE +     AG      + CS       IR        +G+I+L+       LLA+ 
Sbjct: 90  DT-PELVIEGMRAGASGYLLKDCSAEELCTAIRA-----VARGQILLQAS-SAAQLLASL 142

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q     +  +   +   LT RE+E L  ++ G+++ EIA  L +S  TV  +I  I  K 
Sbjct: 143 QTKPVAAAPLSVAEQLGLTTRELEVLRLVTLGQSNTEIAAALFVSDATVKTHINHIFSKL 202

Query: 229 ATKTRSGAIAYA 240
             + RS AI  A
Sbjct: 203 GARNRSQAIIKA 214


>gi|193077065|gb|ABO11822.2| putative two-component response regulator protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 319

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|298247435|ref|ZP_06971240.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550094|gb|EFH83960.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 234

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L  ++ G+ S EIA  LGIS  TV  ++ SI  K    +R+ A+A A+ 
Sbjct: 169 EGELSERELEVLRKVASGERSKEIAAQLGISLRTVGAHLTSIYTKLGVDSRTSAVAVALE 228

Query: 243 NNIV 246
             ++
Sbjct: 229 RGLL 232


>gi|262225461|ref|YP_003280952.1| pCQ3_103 [Streptomyces sp. W9]
 gi|261597637|gb|ACX85604.1| pCQ3_103 [Streptomyces sp. W9]
          Length = 113

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +T R+++ L  I+ G T+  IA  LGIS NTV   +ASI RK     R+ A+A A+R
Sbjct: 28  YTVTRRQLDILRLIANGNTTTAIARRLGISYNTVTKQVASIHRKLRVSDRAQAVAVALR 86


>gi|262173265|ref|ZP_06040942.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
 gi|261890623|gb|EEY36610.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
          Length = 224

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+
Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAI 217


>gi|258622070|ref|ZP_05717096.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585394|gb|EEW10117.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 224

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+
Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAI 217


>gi|258626786|ref|ZP_05721594.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580926|gb|EEW05867.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 224

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+
Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAI 217


>gi|330888767|gb|EGH21428.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str.
           301020]
          Length = 74

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + +
Sbjct: 14  LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSGV 73


>gi|320322629|gb|EFW78722.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 77

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + +
Sbjct: 17  LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSGV 76


>gi|262283888|gb|ACY40752.1| VisR [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 98/252 (38%), Gaps = 36/252 (14%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEY 55
            ++  ++ RT  V+ + +RSDL  R+I +                  +    R+    E 
Sbjct: 8   TMSSAEQLRTVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGSGLPAKQRLVCELEN 67

Query: 56  VGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
            G+S+  F     D + +  LD I  S  P        LS    Y      P + F P  
Sbjct: 68  WGSSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FSPFM 118

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII--LRDRLWEI-GLLAAYQA 170
             L + I P       +  L F V    +G   +   G  I    D + E+ G       
Sbjct: 119 TRLQDGILP-------FSGLAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMM 171

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++    +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +
Sbjct: 172 DLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDS 231

Query: 231 KTRSGAIAYAVR 242
             R  AIA A+R
Sbjct: 232 VNRIQAIAKAIR 243


>gi|222148404|ref|YP_002549361.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|68449749|gb|AAY97861.1| AvsR [Agrobacterium vitis]
 gi|221735392|gb|ACM36355.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 246

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 161 EIGLLAA-YQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +I LLA  + A + K  D    G    LT RE E L W + GK+  E AVILGIS  TV 
Sbjct: 153 DIHLLAGKFHAGLVKRCDGTRLGGVPTLTRREQETLRWTAAGKSYWETAVILGISERTVR 212

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++A+   K    + + A+A A++  ++
Sbjct: 213 YFMANARTKLDAVSNTQAVAKALQRGLI 240


>gi|77919001|ref|YP_356816.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545084|gb|ABA88646.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM
           2380]
          Length = 214

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G +  LT  E++ L  I+EGKT++EIA I  +S  T+  ++  I +K     R  A+A A
Sbjct: 149 GAEHNLTKTEIKVLKHIAEGKTNNEIAQIQFVSIETIKTHVQRIFKKLEVGNRMEAVAVA 208

Query: 241 VRNNIV 246
            + NI+
Sbjct: 209 RKKNII 214


>gi|82940563|emb|CAJ44292.1| putative transcription regulator protein MotS, LuxR family
           [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+R
Sbjct: 187 LSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243


>gi|295703554|ref|YP_003596629.1| two-component response regulator LiaR [Bacillus megaterium DSM 319]
 gi|294801213|gb|ADF38279.1| two-component response regulator LiaR [Bacillus megaterium DSM 319]
          Length = 208

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 40/61 (65%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  +++GKT+ EIA  L I+  TV  ++++++ K   + R+ A+ YA ++ 
Sbjct: 146 ELTAREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHK 205

Query: 245 I 245
           +
Sbjct: 206 L 206


>gi|290955466|ref|YP_003486648.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260644992|emb|CBG68078.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 342

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + L+ RE+E LT  + G T+  IA  L +S  TV+ ++  ++RKT   +R+ A A AVR+
Sbjct: 263 YGLSPRELEVLTRAATGMTNQAIAQALFLSPRTVHTHVEHLLRKTGAASRAEATALAVRD 322

Query: 244 NIV 246
            ++
Sbjct: 323 GLL 325


>gi|22125626|ref|NP_669049.1| transcriptional activator protein [Yersinia pestis KIM 10]
 gi|45442066|ref|NP_993605.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51596821|ref|YP_071012.1| quorum-sensing transcriptional activator YpeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108807950|ref|YP_651866.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Antiqua]
 gi|108812215|ref|YP_647982.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|145599154|ref|YP_001163230.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides F]
 gi|149365634|ref|ZP_01887669.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CA88-4125]
 gi|153948985|ref|YP_001400524.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162419359|ref|YP_001606210.1| LuxR family transcriptional regulator [Yersinia pestis Angola]
 gi|165927469|ref|ZP_02223301.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939475|ref|ZP_02228021.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008189|ref|ZP_02229087.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214550|ref|ZP_02240585.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402379|ref|ZP_02307842.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422303|ref|ZP_02314056.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167427015|ref|ZP_02318768.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469621|ref|ZP_02334325.1| transcriptional regulator, LuxR family protein [Yersinia pestis
           FV-1]
 gi|170023896|ref|YP_001720401.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186895898|ref|YP_001873010.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|218929546|ref|YP_002347421.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CO92]
 gi|229837989|ref|ZP_04458148.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895186|ref|ZP_04510361.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides A]
 gi|229898551|ref|ZP_04513696.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229902547|ref|ZP_04517664.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|294504217|ref|YP_003568279.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Z176003]
 gi|21958535|gb|AAM85300.1|AE013776_9 putative transcriptional activator protein [Yersinia pestis KIM 10]
 gi|6648672|gb|AAF21289.1| transcriptional activator YpeR [Yersinia pestis]
 gi|45436929|gb|AAS62482.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590103|emb|CAH21738.1| quorum-sensing transcriptional activator YpeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775863|gb|ABG18382.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|108779863|gb|ABG13921.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Antiqua]
 gi|115348157|emb|CAL21085.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CO92]
 gi|145210850|gb|ABP40257.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides F]
 gi|149292047|gb|EDM42121.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CA88-4125]
 gi|152960480|gb|ABS47941.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           IP 31758]
 gi|162352174|gb|ABX86122.1| transcriptional regulator, LuxR family [Yersinia pestis Angola]
 gi|165912524|gb|EDR31155.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920524|gb|EDR37801.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992571|gb|EDR44872.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204252|gb|EDR48732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958809|gb|EDR55830.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048212|gb|EDR59620.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167053994|gb|EDR63822.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750430|gb|ACA67948.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186698924|gb|ACC89553.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679994|gb|EEO76093.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|229688099|gb|EEO80170.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694355|gb|EEO84402.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701820|gb|EEO89844.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides A]
 gi|262362334|gb|ACY59055.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           D106004]
 gi|262366357|gb|ACY62914.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           D182038]
 gi|294354676|gb|ADE65017.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Z176003]
 gi|320014713|gb|ADV98284.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 245

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 9/116 (7%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           D+ +   + +V + +I ++L+F      + D++  +   + ++ N     +    K    
Sbjct: 132 DSIFFDESIEVNKEKIQMLLIF------IHDKMLGLYNKSHHENNTLNKKE---NKREIF 182

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + RE E L W S GKT  EIA+ILGI ++TV  +I +I+RK        AI   + 
Sbjct: 183 SPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIE 238


>gi|89894389|ref|YP_517876.1| hypothetical protein DSY1643 [Desulfitobacterium hafniense Y51]
 gi|89333837|dbj|BAE83432.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 214

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ LT++ +G ++ EI   L IS  TV N+++SI RK A + R+ A   AV+  +
Sbjct: 151 LSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLKL 210

Query: 246 V 246
           V
Sbjct: 211 V 211


>gi|154685393|ref|YP_001420554.1| YhcZ [Bacillus amyloliquefaciens FZB42]
 gi|154351244|gb|ABS73323.1| YhcZ [Bacillus amyloliquefaciens FZB42]
          Length = 214

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I++GK++ EIA  L IS  TV  ++++++ K     R+ A  YAV+ N
Sbjct: 148 QLTPREKDVLQEIAKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYN 207

Query: 245 I 245
           +
Sbjct: 208 V 208


>gi|82703532|ref|YP_413098.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411597|gb|ABB75706.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 244

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT RE ECL W +EGKT  EIA I+ IS  TV  ++ + ++K     R  AI+ A+
Sbjct: 174 KKANLTEREQECLLWAAEGKTGWEIANIVKISERTVTFHLQNAIQKLGVVNRQQAISRAL 233

Query: 242 RNNIV 246
              ++
Sbjct: 234 SMGLI 238


>gi|86747544|ref|YP_484040.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570572|gb|ABD05129.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           HaA2]
          Length = 242

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+  Y  N  +S +    +   LT RE E L+W ++GKT+ EI++IL I+  TV  ++  
Sbjct: 158 LIGVYAHNRLRSLNRPKPQRRLLTSRECEILSWAAQGKTAWEISMILRIAERTVKFHLIE 217

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
             RK     R+ A+A A+   ++
Sbjct: 218 ASRKLNAVNRTAAVAKALSLGLI 240


>gi|17228408|ref|NP_484956.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130259|dbj|BAB72870.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+GRE+E L  + EG ++ EIA  L +S NTV  ++  IM K A   R  A   A
Sbjct: 160 GNTANLSGRELEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVA 219

Query: 241 VRNNIV 246
           +R+ +V
Sbjct: 220 LRSGLV 225


>gi|229541561|ref|ZP_04430621.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229325981|gb|EEN91656.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 227

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N++++I++K   K R+ A+  A++N 
Sbjct: 164 LTPRECEVLQLLADGKSNRAIGDALYISEKTVKNHVSNILQKLKVKDRTQAVVTAIKNG 222


>gi|153007543|ref|YP_001368758.1| autoinducer-binding domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559431|gb|ABS12929.1| Autoinducer-binding domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 235

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A
Sbjct: 172 EVNLTMREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 229


>gi|126641440|ref|YP_001084424.1| putative two-component response regulator protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 257

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 194 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 248


>gi|218673112|ref|ZP_03522781.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 96

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A
Sbjct: 30  GAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKA 89

Query: 241 VR 242
           +R
Sbjct: 90  IR 91


>gi|167464395|ref|ZP_02329484.1| Two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 241

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++EG+++  I   L IS  TV N+++SI++K     R+ A+  A++N 
Sbjct: 179 LTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQKMEVDDRTQAVIIAIKNG 237


>gi|167032675|ref|YP_001667906.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166859163|gb|ABY97570.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 219

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT R++E L  I  GK++ EIA  LG+S  T+  + + IM++      +G + +A
Sbjct: 150 GERHNLTARQLEILRLIVRGKSTREIATGLGLSIKTIETHRSQIMKRLQIHDVAGLVLFA 209

Query: 241 VRNNIV 246
           VR  I+
Sbjct: 210 VREKII 215


>gi|78778542|ref|YP_396654.1| LuxR family transcriptional regulator [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712041|gb|ABB49218.1| transcriptional regulator, LuxR family [Prochlorococcus marinus
           str. MIT 9312]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 40/58 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+ N
Sbjct: 16  LSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73


>gi|325277459|ref|ZP_08143066.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097402|gb|EGB95641.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 82

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE + L W + GK+S EI  IL    +TVN ++++I+RK    TR  A+  A+R
Sbjct: 19  LTPREQQVLLWCAYGKSSWEIGQILACKESTVNFHVSNILRKFDVPTRVAAVIKAIR 75


>gi|116250469|ref|YP_766307.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255117|emb|CAK06191.1| regulator of flagellar and motility genes, also regulates rem
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 248

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 98/252 (38%), Gaps = 36/252 (14%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEY 55
            ++  ++ RT  V+ + +RSDL  R+I +                  +    R+    E 
Sbjct: 8   TMSSAEQLRTVRVNRISSRSDLFPRLIAMQKLAEAQGFAIFRVSGSGLPAKQRLVCELEN 67

Query: 56  VGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
            G+S+  F     D + +  LD I  S  P        LS    Y      P + F P  
Sbjct: 68  WGSSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FSPFM 118

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII--LRDRLWEI-GLLAAYQA 170
             L + I P       +  L F V    +G   +   G  I    D + E+ G       
Sbjct: 119 TRLQDGILP-------FSGLAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMM 171

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++    +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +
Sbjct: 172 DLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDS 231

Query: 231 KTRSGAIAYAVR 242
             R  AIA A+R
Sbjct: 232 VNRIQAIAKAIR 243


>gi|324997346|ref|ZP_08118458.1| two component transcriptional regulator, LuxR family protein
           [Pseudonocardia sp. P1]
          Length = 222

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 41/62 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GRE+E L  ++ G  + EIA +L ++  TV N++++++ K  T+ R+ A+  A+ + 
Sbjct: 153 ELSGRELEVLRLLAAGYANREIAQVLVLAEGTVKNHVSNVLLKLGTRDRTRAVLRALHHG 212

Query: 245 IV 246
           ++
Sbjct: 213 LL 214


>gi|311069822|ref|YP_003974745.1| two-component response regulator YvqE [Bacillus atrophaeus 1942]
 gi|310870339|gb|ADP33814.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus atrophaeus 1942]
          Length = 211

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EGKT+ EI   L I+  TV  ++ +I+ K     R+ A  YA RN +
Sbjct: 150 LTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHVTNILSKLEVADRTQAAVYAHRNKL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|70731557|ref|YP_261298.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345856|gb|AAY93462.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 219

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT R++E L  I  GK++ EIA+ LG+S  TV  + + IM++      +G + +AV
Sbjct: 151 QNHNLTARQLEILRLIVRGKSTREIALGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFAV 210

Query: 242 RNNIV 246
           R  I+
Sbjct: 211 RERII 215


>gi|121605575|ref|YP_982904.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120594544|gb|ABM37983.1| transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 262

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L ++  L   Q    KS  V   + F L+ RE++ + W++ GKT+ EI  IL IS  TV 
Sbjct: 174 LRQVAQLPQQQKPFAKSPRVVQEEIFGLSEREIQIMDWVAMGKTNSEIGSILNISGFTVK 233

Query: 219 NYIASIMRKTATKTRSGAIA 238
           N++  I +K     R+ A++
Sbjct: 234 NHMQRIFQKLNVFNRAQAVS 253


>gi|260777849|ref|ZP_05886742.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605862|gb|EEX32147.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 240

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE++CLTW ++GK++ EIA I+  +  TV  ++++  +K     R  A+  A+
Sbjct: 176 LTNREIQCLTWAADGKSASEIADIVDCTERTVKFHLSNACKKLGATNRCQAVTRAL 231


>gi|297567827|ref|YP_003686798.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946]
 gi|296852276|gb|ADH65290.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946]
          Length = 206

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +     V  G   +L+ RE+E L  I+EG ++ EIA  LGIS +TV  +I  ++ K +  
Sbjct: 132 VLGQLSVLSGGQAQLSPRELEVLRLIAEGLSNKEIAQRLGISLSTVKTHIEELLAKLSAS 191

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   AVR  ++
Sbjct: 192 DRTQAAIKAVRQGLL 206


>gi|289641790|ref|ZP_06473948.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508434|gb|EFD29375.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 377

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE+E LT ++ G T++ IA  L I+  TV +++  I+RK   + R+ AI+  +R  I
Sbjct: 313 LTGRELEVLTLMATGATNNRIAEKLVITNGTVKSHVKRILRKLGAENRAEAISQYLRLTI 372


>gi|224552993|gb|ACN54748.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+S GKT  E+++IL I+  TV  ++ ++M+K        A+ 
Sbjct: 141 HQKKNVFLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVK 200

Query: 239 YAV 241
             V
Sbjct: 201 LGV 203


>gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 221

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 19/175 (10%)

Query: 83  PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITPP------AGMDNRYCSL 133
           P  L+  + + E D Y     V Q+P     PV      N T        +G D  Y S 
Sbjct: 47  PHLLITDIVMPEMDGYDLVRQVRQQPAFRLLPVIFLTGRNKTKERIRGYQSGCDV-YLSK 105

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELTGREV 191
            F++  +   +  L  + ++I  D  W I   +  +  M    +Y   WG    LT RE 
Sbjct: 106 PFELEELGAVVRNLLDRMQMIQTD--WHIRTKSQARGEMETLAAYQ-QWG----LTQREQ 158

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E LT +++G ++ +I   L +S  T+  Y++S+++KT    R+  + +A+ ++++
Sbjct: 159 EVLTLLTKGLSNAQIGDRLHLSARTIEKYVSSLLQKTEVHNRAELVRFALEHHLL 213


>gi|53717016|ref|YP_106048.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           ATCC 23344]
 gi|67643368|ref|ZP_00442115.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|124382942|ref|YP_001025964.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126445405|ref|YP_001061548.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|126446264|ref|YP_001078053.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10247]
 gi|126457742|ref|YP_001074487.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134284195|ref|ZP_01770887.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|167003599|ref|ZP_02269385.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|167741352|ref|ZP_02414126.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 14]
 gi|167818528|ref|ZP_02450208.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167826910|ref|ZP_02458381.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
 gi|167848430|ref|ZP_02473938.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167896980|ref|ZP_02484382.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167905359|ref|ZP_02492564.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167921599|ref|ZP_02508690.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
 gi|217423225|ref|ZP_03454727.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226194550|ref|ZP_03790147.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237507990|ref|ZP_04520705.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313995|ref|ZP_04813012.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254176241|ref|ZP_04882899.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|254189375|ref|ZP_04895885.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254195237|ref|ZP_04901665.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|254200901|ref|ZP_04907266.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|254204867|ref|ZP_04911220.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|254262915|ref|ZP_04953780.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254299430|ref|ZP_04966879.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|254358982|ref|ZP_04975254.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|52422986|gb|AAU46556.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 23344]
 gi|126224896|gb|ABN88401.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
 gi|126231510|gb|ABN94923.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|126239118|gb|ABO02230.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10247]
 gi|134244398|gb|EBA44504.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|147748513|gb|EDK55588.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|147754453|gb|EDK61517.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|148028169|gb|EDK86129.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|156105362|gb|ABU49180.1| BpsR4 [Burkholderia pseudomallei]
 gi|157809517|gb|EDO86687.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|157937053|gb|EDO92723.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160697283|gb|EDP87253.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|169651984|gb|EDS84677.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|217394133|gb|EEC34153.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225933378|gb|EEH29368.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|235000195|gb|EEP49619.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238524705|gb|EEP88137.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|242137234|gb|EES23637.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|243060902|gb|EES43088.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|254213917|gb|EET03302.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|261827048|gb|ABM99276.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    
Sbjct: 177 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 236

Query: 245 IV 246
           ++
Sbjct: 237 LI 238


>gi|322382401|ref|ZP_08056304.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153618|gb|EFX45997.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 230

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++EG+++  I   L IS  TV N+++SI++K     R+ A+  A++N 
Sbjct: 168 LTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQKMEVDDRTQAVIIAIKNG 226


>gi|218516149|ref|ZP_03512989.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 122

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 37/57 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R
Sbjct: 61  LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIR 117


>gi|167913657|ref|ZP_02500748.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 112]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    
Sbjct: 177 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 236

Query: 245 IV 246
           ++
Sbjct: 237 LI 238


>gi|330895505|gb|EGH27816.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330981863|gb|EGH79966.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 77

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A
Sbjct: 17  LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71


>gi|330873485|gb|EGH07634.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 77

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A
Sbjct: 17  LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71


>gi|330868990|gb|EGH03699.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|331011382|gb|EGH91438.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 74

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A
Sbjct: 14  LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 68


>gi|257482151|ref|ZP_05636192.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289625831|ref|ZP_06458785.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647709|ref|ZP_06479052.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330987557|gb|EGH85660.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 77

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A
Sbjct: 17  LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71


>gi|207722200|ref|YP_002252637.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2]
 gi|206587375|emb|CAQ17958.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2]
          Length = 459

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   +
Sbjct: 399 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 458

Query: 246 V 246
           +
Sbjct: 459 I 459


>gi|182415168|ref|YP_001820234.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842382|gb|ACB76634.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    LT RE E L +++EG  S EIA  L +S  TV N+ A+I+++T  ++ +  + YA
Sbjct: 150 GAGPALTNREREVLRYVAEGLGSKEIADRLALSTRTVENHRANILKRTGLRSVAQLVLYA 209

Query: 241 VRNNIV 246
            R  ++
Sbjct: 210 ARLGLI 215


>gi|241203093|ref|YP_002974189.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856983|gb|ACS54650.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 248

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+R
Sbjct: 187 LSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243


>gi|115265604|dbj|BAF32866.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv.
           actinidiae]
 gi|330966735|gb|EGH66995.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 77

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A
Sbjct: 17  LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71


>gi|28871776|ref|NP_794395.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966768|ref|ZP_03394919.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383276|ref|ZP_07231694.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302062485|ref|ZP_07254026.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302133467|ref|ZP_07259457.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28855028|gb|AAO58090.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928618|gb|EEB62162.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331018915|gb|EGH98971.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 77

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A
Sbjct: 17  LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71


>gi|89056006|ref|YP_511457.1| two component LuxR family transcriptional regulator [Jannaschia sp.
           CCS1]
 gi|88865555|gb|ABD56432.1| two component transcriptional regulator, LuxR family [Jannaschia
           sp. CCS1]
          Length = 214

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +S G    EIA  LGIS  TV N+I SI RK    +   A+A A R+ +
Sbjct: 154 LTNRETEILRSVSRGYKRHEIAAQLGISAGTVGNHITSIYRKLEVSSNIEAVAIASRSGM 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|66047505|ref|YP_237346.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|289675883|ref|ZP_06496773.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
 gi|302188577|ref|ZP_07265250.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
 gi|63258212|gb|AAY39308.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|330938127|gb|EGH41849.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952935|gb|EGH53195.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
 gi|330969528|gb|EGH69594.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 77

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A
Sbjct: 17  LTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQA 71


>gi|119715674|ref|YP_922639.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536335|gb|ABL80952.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 213

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  +++G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAV+ 
Sbjct: 148 LRLTERELEVLRLVAKGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVMYAVKE 207

Query: 244 NIV 246
            ++
Sbjct: 208 KLL 210


>gi|268610385|ref|ZP_06144112.1| response regulator [Ruminococcus flavefaciens FD-1]
          Length = 208

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 163 GLLAAYQANMFKSY--DV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           G +  +  N+F+S   DV      K+F LT RE E +  I +G  + EIA  L ++  TV
Sbjct: 120 GGINVFCDNVFRSIKKDVVVQQDAKNFGLTERETEFIRLICDGCDNKEIAAKLFLAEGTV 179

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            N I+ ++ K   K R+    +A++NNIV
Sbjct: 180 RNGISRLLEKLELKDRTQLAVFAIKNNIV 208


>gi|262164556|ref|ZP_06032294.1| transcriptional regulator LuxR family [Vibrio mimicus VM223]
 gi|262026936|gb|EEY45603.1| transcriptional regulator LuxR family [Vibrio mimicus VM223]
          Length = 224

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+
Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAI 217


>gi|206973784|ref|ZP_03234702.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|222095860|ref|YP_002529917.1| response regulator [Bacillus cereus Q1]
 gi|206747940|gb|EDZ59329.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|221239918|gb|ACM12628.1| response regulator [Bacillus cereus Q1]
          Length = 213

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA +L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207


>gi|149187186|ref|ZP_01865484.1| LuxR, transcriptional regulator [Vibrio shilonii AK1]
 gi|148838722|gb|EDL55661.1| LuxR, transcriptional regulator [Vibrio shilonii AK1]
          Length = 259

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE  CL W++EGK+S E+A I+G S  TVN +I +   K    +R+ A++ A+
Sbjct: 185 LTLREQICLAWVAEGKSSWEVAQIIGCSERTVNFHIQNASEKLNAFSRTQAVSKAL 240


>gi|53721347|ref|YP_110332.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52211761|emb|CAH37760.1| putative LuxR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
          Length = 234

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    
Sbjct: 173 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 232

Query: 245 IV 246
           ++
Sbjct: 233 LI 234


>gi|269837395|ref|YP_003319623.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786658|gb|ACZ38801.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 249

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ REVE L  +++G ++ EIA  L I+  TV N++ S++RK     R  A+  AV
Sbjct: 169 KRLPLSVREVEVLDCVAQGLSNKEIAEALFITEQTVKNHMTSVLRKLQVNDRVQAVLCAV 228

Query: 242 RNN 244
           RN 
Sbjct: 229 RNG 231


>gi|228469458|ref|ZP_04054466.1| transcriptional regulator, LuxR family domain protein
           [Porphyromonas uenonis 60-3]
 gi|228309033|gb|EEK17676.1| transcriptional regulator, LuxR family domain protein
           [Porphyromonas uenonis 60-3]
          Length = 201

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   L+ RE E +TW++ G T+ EIA +L +S +TV  +  +I  K    + SG   YA
Sbjct: 128 SKQNPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSPSGLTIYA 187

Query: 241 VRNNIV 246
           + NN++
Sbjct: 188 LMNNLI 193


>gi|170076532|ref|YP_001733171.1| response regulator receiver [Synechococcus sp. PCC 7002]
 gi|169887394|gb|ACB01102.1| Response regulator receiver, LuxR domain [Synechococcus sp. PCC
           7002]
          Length = 231

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 46/81 (56%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A +Q  M +       +D  LT RE E L  I+ GK++ EIA  L I+ +TV  ++ +I+
Sbjct: 138 AQFQQPMAEMPRSVPAQDNPLTQREGEILALIANGKSNSEIAETLYIAASTVRVHVHAIL 197

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K   + R+ A+  A+R+ ++
Sbjct: 198 QKLEARDRTQAVVIALRHGLI 218


>gi|325266892|ref|ZP_08133563.1| nitrate/nitrite response regulator protein NarL [Kingella
           denitrificans ATCC 33394]
 gi|324981633|gb|EGC17274.1| nitrate/nitrite response regulator protein NarL [Kingella
           denitrificans ATCC 33394]
          Length = 224

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  +S G ++  IA  L ++ +TV  ++ +I+RK    +R  A  YAV++N
Sbjct: 153 ELTARELEILGHLSAGHSNKIIARHLDLAESTVKVHVQNILRKLELDSRVQAAVYAVQHN 212

Query: 245 I 245
           I
Sbjct: 213 I 213


>gi|291300526|ref|YP_003511804.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569746|gb|ADD42711.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT I+ G+++ EIA  L IS  TV  +I ++  K A + R+ A+ YA R+ +
Sbjct: 161 LTKRESEVLTLIAAGRSNAEIARQLYISEATVKTHINNLFTKAALRDRAQAVTYAYRHGL 220


>gi|170721041|ref|YP_001748729.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759044|gb|ACA72360.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 82

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +AN  +  D        LT RE + L W + GK+S EI  IL    +TVN ++ +I+RK 
Sbjct: 2   KANTQQIEDSQADTPIRLTPREQQVLLWCAYGKSSWEIGQILQCQESTVNFHVGNILRKF 61

Query: 229 ATKTRSGAIAYAVR 242
              TR  A+  A+R
Sbjct: 62  DVSTRVAAVIKAIR 75


>gi|56421574|ref|YP_148892.1| hypothetical protein GK3039 [Geobacillus kaustophilus HTA426]
 gi|56381416|dbj|BAD77324.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 391

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+ RE+E L  +++G ++ E A  L +S  TV +YI+S +RK   K R+ A+A A
Sbjct: 325 GRAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKA 384

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 385 LRLGLI 390


>gi|238796086|ref|ZP_04639597.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
 gi|238720031|gb|EEQ11836.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
          Length = 240

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E + W S GK+  EIA+ILG+   T+ N++  ++RK        AI+ AV 
Sbjct: 173 FSNRENEIIYWASVGKSYQEIALILGVKLTTIKNHMGKVVRKLGVTNAKHAISIAVE 229


>gi|254447404|ref|ZP_05060870.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
 gi|198262747|gb|EDY87026.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
          Length = 213

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G  ++LT REV  +  +SEG ++ EIA  L +   TV NY++S++ K   + R+ A+
Sbjct: 148 GDAYDLTAREVNIIELMSEGASNKEIAFRLDLKMGTVKNYVSSVLLKLGVRDRTQAV 204


>gi|284801354|ref|YP_003413219.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578]
 gi|284994496|ref|YP_003416264.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923]
 gi|284056916|gb|ADB67857.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578]
 gi|284059963|gb|ADB70902.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923]
          Length = 212

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++
Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLGVQDRTQAAIYAFKHD 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|30019588|ref|NP_831219.1| two-component response regulator yvqC [Bacillus cereus ATCC 14579]
 gi|206968465|ref|ZP_03229421.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218232967|ref|YP_002366221.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|296502111|ref|YP_003663811.1| two-component response regulator yvqC [Bacillus thuringiensis
           BMB171]
 gi|29895132|gb|AAP08420.1| Two-component response regulator yvqC [Bacillus cereus ATCC 14579]
 gi|206737385|gb|EDZ54532.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218160924|gb|ACK60916.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|296323163|gb|ADH06091.1| two-component response regulator yvqC [Bacillus thuringiensis
           BMB171]
 gi|326939160|gb|AEA15056.1| two-component response regulator yvqC [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 210

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 148 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|56965136|ref|YP_176868.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911380|dbj|BAD65907.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 209

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A  Q  M  ++  +      LT RE+E L  +SEGKT+ +I+  L I+  TV  +++ I+
Sbjct: 127 AKVQGQMISAFTANVPLHQALTKRELEILKLMSEGKTNQQISEELYITIKTVKTHVSHIL 186

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K   + R+ A+ YA++  +
Sbjct: 187 AKLEVEDRTQAVIYALKEKL 206


>gi|298717240|ref|YP_003729882.1| transcriptional activator protein PagR [Pantoea vagans C9-1]
 gi|298361429|gb|ADI78210.1| Transcriptional activator protein PagR [Pantoea vagans C9-1]
          Length = 230

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE + L W+S+GKT  EIA+IL I+  TV  ++ ++M+K        AI
Sbjct: 168 LSPRERQILKWVSDGKTYAEIAIILSIAERTVKFHMGNVMKKLGVNNARHAI 219


>gi|167578890|ref|ZP_02371764.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167616988|ref|ZP_02385619.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257140903|ref|ZP_05589165.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    
Sbjct: 177 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 236

Query: 245 IV 246
           ++
Sbjct: 237 LI 238


>gi|302525216|ref|ZP_07277558.1| predicted protein [Streptomyces sp. AA4]
 gi|302434111|gb|EFL05927.1| predicted protein [Streptomyces sp. AA4]
          Length = 511

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGREVE L  +++G ++ EIA  L +SR TV+ ++  I  K    TR+ A   A+R  +
Sbjct: 450 LTGREVEVLLQLAQGLSNPEIAAALTVSRKTVSTHLEHIYAKLGVTTRTQAALVAMRRGL 509


>gi|284028795|ref|YP_003378726.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808088|gb|ADB29927.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 200

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE++ L   SEG +  +IA  L ++  TV NY+++ MRKT  K+R  A  YA
Sbjct: 137 DNPLTDRELDALRLTSEGYSVADIATRLFLAEGTVRNYLSNAMRKTQAKSRHEAARYA 194


>gi|226304519|ref|YP_002764477.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183634|dbj|BAH31738.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 220

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 43/66 (65%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  L+ RE++ +  +S+G  +++IA  L + ++TV ++I++I +K   +TR   + +A
Sbjct: 151 GSDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWA 210

Query: 241 VRNNIV 246
            RNN++
Sbjct: 211 YRNNVI 216


>gi|182413538|ref|YP_001818604.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840752|gb|ACB75004.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 301

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L W+++GKT+ EI  ILG +  TV  ++ +++ K   +TR   +A A+R
Sbjct: 237 LTPRETEILFWVAQGKTNAEIGTILGAAPATVKKHVENLLPKLGVETR---LAAALR 290


>gi|256420485|ref|YP_003121138.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035393|gb|ACU58937.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 208

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 178 VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           V   K+F  LT RE E L+ ISEG T+ EIA  L IS +TVN++   ++ K   K  +  
Sbjct: 138 VGLQKNFPPLTRREKEVLSLISEGNTNAEIAEKLFISADTVNSHRKKLLAKLEVKNTAML 197

Query: 237 IAYAVRNNIV 246
           I YAV N ++
Sbjct: 198 IKYAVDNKLL 207


>gi|224552996|gb|ACN54750.1| PagR [Pantoea sp. C9-1]
          Length = 210

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE + L W+S+GKT  EIA+IL I+  TV  ++ ++M+K        AI
Sbjct: 148 LSPRERQILKWVSDGKTYAEIAIILSIAERTVKFHMGNVMKKLGVNNARHAI 199


>gi|51892061|ref|YP_074752.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855750|dbj|BAD39908.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 218

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L   S G T  EIA  L ++ +TV N++  I+ K   + RS A+ YA+R  
Sbjct: 150 QLSPREIEVLRLASTGLTYKEIAAKLYVAESTVKNHMRHILEKLHLRNRSEAVGYAIRTG 209

Query: 245 I 245
           +
Sbjct: 210 L 210


>gi|323489447|ref|ZP_08094676.1| two-component response regulator-like protein [Planococcus
           donghaensis MPA1U2]
 gi|323396941|gb|EGA89758.1| two-component response regulator-like protein [Planococcus
           donghaensis MPA1U2]
          Length = 213

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++GK++ EIA  L ++  TV  +I++I  K A + R+ A  YAV++ 
Sbjct: 147 QLTPREQEVLAELTKGKSNREIASALFVTEKTVKTHISNIFIKLAVQDRTQAALYAVKHG 206

Query: 245 I 245
           +
Sbjct: 207 L 207


>gi|229196490|ref|ZP_04323234.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228586846|gb|EEK44920.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 214

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  I++G+++ EIA +L I+  TV  ++++++ K     R+ A  YAV++
Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKH 206


>gi|311899082|dbj|BAJ31490.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 215

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G+   LT RE E L+ I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +
Sbjct: 149 QGRGGNLTEREREVLSHIADGRSNREIARTLHLSEKTVKTHVSNILMKLDVADRTQAALW 208

Query: 240 AVRNN 244
           AVRN 
Sbjct: 209 AVRNQ 213


>gi|228951917|ref|ZP_04114015.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807840|gb|EEM54361.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 206

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 144 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 203

Query: 245 I 245
           +
Sbjct: 204 L 204


>gi|319652400|ref|ZP_08006516.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317395862|gb|EFV76584.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 210

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E G+ A     + K  D     D  LT RE   L  I EG +++EIA  L IS  TV N 
Sbjct: 126 EEGVAAKVVPQLMKQQDTKE-PDPSLTPRERAILKCIGEGLSNNEIAERLAISTGTVKNN 184

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
            + I+ K   + R+    YA+R+N+V
Sbjct: 185 TSQILTKLDLRDRTQLAIYAIRHNLV 210


>gi|298247591|ref|ZP_06971396.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550250|gb|EFH84116.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             LT RE + L  +++G+ S EIAV LGI+  TV  Y+ SI  K    +R+ A+A A+
Sbjct: 166 IALTKRERQVLAGVAQGERSKEIAVRLGITERTVRAYLTSIYTKLNVDSRASAVAVAL 223


>gi|162452375|ref|YP_001614742.1| LuxR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161162957|emb|CAN94262.1| transcriptional regulator, LuxR family [Sorangium cellulosum 'So ce
           56']
          Length = 270

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE+E L  +  GKT+ EIAV+L IS+ TV ++IA    K    +R+GA
Sbjct: 209 LTARELEVLRLVGVGKTNREIAVVLHISQKTVQHHIAHAYDKLGIYSRAGA 259


>gi|307824873|ref|ZP_07655096.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
 gi|307734231|gb|EFO05085.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
          Length = 236

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E L W ++GKTS EI+ IL I+  TVN +I +++ K     ++ A   A 
Sbjct: 176 LSNREIEVLRWTADGKTSSEISCILNIAERTVNFHINNVVTKLNAANKTSATIKAA 231


>gi|294632670|ref|ZP_06711229.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. e14]
 gi|292830451|gb|EFF88801.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. e14]
          Length = 201

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGR+++ L  +++G  ++ IA  L  SR+TV N I  +M +   + R+ A+A+A+R  +
Sbjct: 141 LTGRQLDVLRLMADGHGNEAIAATLHCSRHTVKNVIYELMGQLQVRNRAHAVAHALRTGL 200

Query: 246 V 246
           +
Sbjct: 201 I 201


>gi|229494594|ref|ZP_04388357.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229318956|gb|EEN84814.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 220

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 43/66 (65%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  L+ RE++ +  +S+G  +++IA  L + ++TV ++I++I +K   +TR   + +A
Sbjct: 151 GSDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWA 210

Query: 241 VRNNIV 246
            RNN++
Sbjct: 211 YRNNVI 216


>gi|224552933|gb|ACN54708.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|195977721|ref|YP_002122965.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|225868974|ref|YP_002744922.1| response regulatory protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|195974426|gb|ACG61952.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|225702250|emb|CAX00006.1| response regulatory protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 198

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ +E+  L  I++GKTS EI+ IL +S  T+ NYI+SI  K     R  AI+ A  N 
Sbjct: 138 LSKQEMNILYLIAQGKTSKEISQILFLSNGTIRNYISSIFNKFGVSNRMEAISLAKENG 196


>gi|332142261|ref|YP_004427999.1| two-component response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552283|gb|AEA99001.1| two-component response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 298

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +T RE E L WIS GKTS EI+ IL +S  T N ++  I +K     ++ A A A+R
Sbjct: 237 ITKRESEVLYWISFGKTSWEISQILDMSPRTANKHLEQIYKKLGVDNKTSAAAIALR 293


>gi|320160955|ref|YP_004174179.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994808|dbj|BAJ63579.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 217

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++EGK++ EIA  L IS  TV N+++SI+ K   K R  A+  A    I
Sbjct: 156 LSPREIEVLFLVAEGKSNREIAEQLVISEGTVKNHLSSILSKLGAKDRLQAVIRAREAGI 215

Query: 246 V 246
           +
Sbjct: 216 L 216


>gi|167736315|dbj|BAG07414.1| AHL-dependent transcriptional regulator [Gluconacetobacter
           intermedius]
          Length = 236

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE ECLTW ++GK+S E  +I+G+S  TVN +I + + K     R   +  A+
Sbjct: 174 LTPREKECLTWTAKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAI 229


>gi|85058263|ref|YP_453965.1| transcriptional activator protein [Sodalis glossinidius str.
           'morsitans']
 gi|84778783|dbj|BAE73560.1| transcriptional activator protein [Sodalis glossinidius str.
           'morsitans']
          Length = 245

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE+E L W S GKT  EIA+I+GI+ +TV  +I +++ K        AI  A 
Sbjct: 181 LTSREIEALHWASIGKTYREIAIIMGITESTVKFHIGNLIVKLDVINAKHAIKKAT 236


>gi|325168564|ref|YP_004280354.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064287|gb|ADY67976.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 240

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E LTW + G+   EIA  LG+S  T+ N++  I  +    T + AI  A+RN 
Sbjct: 178 LSDREREVLTWTAAGRRQFEIAATLGLSERTIENHLRRIRHRLGVSTTAQAIRIAIRNG 236


>gi|323464084|gb|ADX76237.1| two-component response regulator [Staphylococcus pseudintermedius
           ED99]
          Length = 208

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  +++GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N+
Sbjct: 147 KLSKRETEVLKEMAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|311103688|ref|YP_003976541.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758377|gb|ADP13826.1| bacterial regulatory protein, LuxR family protein 2 [Achromobacter
           xylosoxidans A8]
          Length = 83

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ R+  CL W + GKTS E A ILG+S +TVN ++ +   K   + R  A+  A+R  +
Sbjct: 18  LSERQASCLHWAALGKTSWETARILGVSESTVNFHLCNACEKLGVRGRRAAVVAALRLGL 77

Query: 246 V 246
           +
Sbjct: 78  I 78


>gi|270490280|ref|ZP_06207354.1| transcriptional regulator, LuxR family [Yersinia pestis KIM D27]
 gi|270338784|gb|EFA49561.1| transcriptional regulator, LuxR family [Yersinia pestis KIM D27]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           RE E L W S GKT  EIA+ILGI ++TV  +I +I+RK        AI   +
Sbjct: 44  RENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGI 96


>gi|261880312|ref|ZP_06006739.1| LuxR family transcriptional regulator [Prevotella bergensis DSM
           17361]
 gi|270333002|gb|EFA43788.1| LuxR family transcriptional regulator [Prevotella bergensis DSM
           17361]
          Length = 197

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GRE+E LT I EG  + EIA  L I   TV  +  +IM K   K+ S    YAV + 
Sbjct: 131 ELSGREIEVLTLIVEGYINKEIAHQLNIGLTTVITHRKNIMDKLGVKSVSALTIYAVMHG 190

Query: 245 IV 246
            V
Sbjct: 191 YV 192


>gi|171914768|ref|ZP_02930238.1| DNA-binding response regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 212

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D+ L+ RE E L  + +G    EIA  L +S +TV+ Y+  + RK    TR+GA+A A++
Sbjct: 149 DYGLSTRERETLELMVQGFIRKEIADRLNLSLHTVDTYLRGVYRKLEVNTRTGAVAKALK 208

Query: 243 NNIV 246
             +V
Sbjct: 209 EGLV 212


>gi|301385893|ref|ZP_07234311.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061837|ref|ZP_07253378.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302130857|ref|ZP_07256847.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 149

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK-TATKTRSGAIAYAV 241
           +L+ REVE L W+++GKT + I  +LG++  TV ++  +IM+K  AT   + A+  A+
Sbjct: 88  KLSTREVEVLKWVADGKTGEVIGKVLGVTERTVTHHTVNIMQKLNATNKTAAAVKAAL 145


>gi|209547915|ref|YP_002279832.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533671|gb|ACI53606.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 248

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+R
Sbjct: 187 LSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 243


>gi|329851959|ref|ZP_08266640.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328839808|gb|EGF89381.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 219

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           + F++       D  LTGRE E L  ++ G T  E+A  LG++ +TV  Y+  I +K   
Sbjct: 144 DHFRTQAPKADPDVALTGRETETLALLARGLTIAEVARHLGLAHSTVAGYVKLIYQKLNI 203

Query: 231 KTRSGAIAYAVRNNIV 246
            TR  A  +AV+  + 
Sbjct: 204 STRVEATLHAVKRGLA 219


>gi|319781695|ref|YP_004141171.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167583|gb|ADV11121.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 256

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           R + GL++       + +D L+E+      L AA      +  D   G+   ++ RE+EC
Sbjct: 147 RGQCGLVVFLGSEMTLQQDALYEVHARCFSLFAAVA--RIRPGDA--GRMRAISKRELEC 202

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L   + G TS+EIA +L +S +T N Y+    +K     R+ A+A A+R  ++
Sbjct: 203 LKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255


>gi|269128235|ref|YP_003301605.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313193|gb|ACY99567.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 253

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  ++ G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  
Sbjct: 189 KLTEREMEVLRLVARGLGNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAVREK 248

Query: 245 IV 246
           ++
Sbjct: 249 LL 250


>gi|228938652|ref|ZP_04101257.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228957814|ref|ZP_04119555.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228971533|ref|ZP_04132157.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978144|ref|ZP_04138522.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407]
 gi|229126854|ref|ZP_04255866.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4]
 gi|229144139|ref|ZP_04272554.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24]
 gi|229149739|ref|ZP_04277969.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550]
 gi|229177946|ref|ZP_04305318.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W]
 gi|229189620|ref|ZP_04316635.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876]
 gi|228593884|gb|EEK51688.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876]
 gi|228605434|gb|EEK62883.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W]
 gi|228633770|gb|EEK90369.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550]
 gi|228639358|gb|EEK95773.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24]
 gi|228656794|gb|EEL12620.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4]
 gi|228781616|gb|EEM29816.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407]
 gi|228788192|gb|EEM36147.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228801896|gb|EEM48772.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228821028|gb|EEM67048.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 206

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 144 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 203

Query: 245 I 245
           +
Sbjct: 204 L 204


>gi|312136161|ref|YP_004003499.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor owensensis OL]
 gi|311776212|gb|ADQ05699.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor owensensis OL]
          Length = 213

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+++ ++  K   L+ RE+E    I++G ++ +I+ IL IS  TV NYI+SI+ K   K 
Sbjct: 142 FQNHSINENKLKNLSERELEIARLIAQGYSNKDISKILFISEGTVRNYISSILEKLELKN 201

Query: 233 RSGAIAYAVRN 243
           R+    Y   N
Sbjct: 202 RTQIAVYYFSN 212


>gi|218682848|ref|ZP_03530449.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 230

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  +
Sbjct: 169 LSIRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 228

Query: 246 V 246
           +
Sbjct: 229 I 229


>gi|124516028|gb|EAY57537.1| putative two component transcriptional regulator, LuxR family
           [Leptospirillum rubarum]
          Length = 211

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L  +S+G ++ EI  I GIS +TV  +I SI+ K +  TR+ A   A++
Sbjct: 148 DNPLSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAVKAIK 207

Query: 243 NNIV 246
             ++
Sbjct: 208 KGLI 211


>gi|297579900|ref|ZP_06941827.1| predicted protein [Vibrio cholerae RC385]
 gi|297535546|gb|EFH74380.1| predicted protein [Vibrio cholerae RC385]
          Length = 224

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+
Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAI 217


>gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 319

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|223934982|ref|ZP_03626901.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896435|gb|EEF62877.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 213

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E L W+++GK++ +IA ILG+S  TV  ++A I      ++R+ A+  A+ +
Sbjct: 151 LSRREAEVLLWVAQGKSNGDIADILGLSEFTVKRHMAGIFDTLGVQSRNAAMLRALES 208


>gi|167645498|ref|YP_001683161.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347928|gb|ABZ70663.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 137

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              LTG+EV+ L  ++ G+++ EIA  LG+S NTV  +IA +  K A   R+ AI  A
Sbjct: 73  SLGLTGQEVKVLERLAAGQSNKEIAAALGLSPNTVKTHIAHLFEKLAVSRRTQAIGKA 130


>gi|148555438|ref|YP_001263020.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148500628|gb|ABQ68882.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 879

 Score = 46.6 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 33/58 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +F L+ RE E +  ++EG  + EIAV LGIS  TV  +   I  K    +RS AIA A
Sbjct: 816 NFTLSPRETEIIALVAEGYITKEIAVRLGISEGTVKTHRKKIHEKLGVASRSQAIARA 873


>gi|87123539|ref|ZP_01079390.1| response regulator like protein [Synechococcus sp. RS9917]
 gi|86169259|gb|EAQ70515.1| response regulator like protein [Synechococcus sp. RS9917]
          Length = 231

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +AN+ +  D    +   L+ R++E L  ++EG ++ EIA  L I+ NTV ++++ IM++ 
Sbjct: 157 EANVMEPSD----QGVVLSERQLEILALVAEGLSNREIATQLQITANTVRDHLSEIMQRL 212

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A++ A+R  ++
Sbjct: 213 GVGNRASAVSSALRLRLI 230


>gi|77458474|ref|YP_347979.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382477|gb|ABA73990.1| putative transcriptional regulator, LuxR family [Pseudomonas
           fluorescens Pf0-1]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 24/155 (15%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD----VARIRIGLMLLFP 149
           +  + Y +++ P+    P  H L   +  P G++    SL  +     AR+R+ L +L  
Sbjct: 101 QSGELYRLVRVPS---GPGVHGLQIPVFGPQGLEG-AMSLGGEQIDASARVRLALGMLAS 156

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                 R RL E  L            D   GK   L+ RE E L W++ G+   +IA  
Sbjct: 157 VAFFSAR-RLLEAPL------------DETAGK---LSTREREVLAWVAAGRRQADIAAT 200

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LG+S  TV N++ S  R     T + AI  A+R  
Sbjct: 201 LGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKG 235


>gi|225872367|ref|YP_002753822.1| two-component system response regulator [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794530|gb|ACO34620.1| two-component system response regulator [Acidobacterium capsulatum
           ATCC 51196]
          Length = 214

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EGK++ E A +LG S  TV     ++MRK   +  S  + YAVRN++
Sbjct: 152 LTPREGEVLQLLAEGKSTKEAASVLGTSTFTVETQRKNVMRKLRLRNVSDLVRYAVRNHM 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|148554913|ref|YP_001262495.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148500103|gb|ABQ68357.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 278

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT  EV CL W++ GKT DEIA I+G +R T+  ++ +   K     RS A+
Sbjct: 202 LTRLEVNCLRWVARGKTDDEIATIMGRARPTIRFHLQNAAIKLGAANRSQAV 253


>gi|317492389|ref|ZP_07950818.1| luxR family bacterial regulatory protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919728|gb|EFV41058.1| luxR family bacterial regulatory protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 215

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A+Y  +    Y  H  +   LT RE E L  +  G ++ EIA +L IS NTV  ++ ++
Sbjct: 134 VASYLISQSSHYRYHSPEATGLTQREKEILNKLRAGASNTEIAKLLFISENTVKTHLYNL 193

Query: 225 MRKTATKTRSGAIAYA 240
            +K + K R+ A+++A
Sbjct: 194 FKKISVKNRTQAVSWA 209


>gi|228990549|ref|ZP_04150514.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM
           12442]
 gi|228996650|ref|ZP_04156289.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17]
 gi|229004298|ref|ZP_04162099.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4]
 gi|228757159|gb|EEM06403.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4]
 gi|228763282|gb|EEM12190.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17]
 gi|228769075|gb|EEM17673.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM
           12442]
          Length = 210

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 148 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|224552912|gb|ACN54694.1| PagR [Pantoea agglomerans]
 gi|224552930|gb|ACN54706.1| PagR [Pantoea agglomerans]
 gi|224552963|gb|ACN54728.1| PagR [Pantoea agglomerans]
 gi|224552966|gb|ACN54730.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|166798330|gb|ABY89693.1| transcriptional regulator [Mesorhizobium loti]
          Length = 243

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R   
Sbjct: 182 LTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGY 241

Query: 246 V 246
           +
Sbjct: 242 I 242


>gi|89097699|ref|ZP_01170587.1| YhcZ [Bacillus sp. NRRL B-14911]
 gi|89087558|gb|EAR66671.1| YhcZ [Bacillus sp. NRRL B-14911]
          Length = 211

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  I++GK++ EIA  L I+  TV  ++++++ K     R+ A   AVR  
Sbjct: 150 ELTKRELDVLKEIAKGKSNKEIAASLFITEKTVKTHVSNLLSKLEISDRTQAALLAVREK 209

Query: 245 IV 246
           +V
Sbjct: 210 LV 211


>gi|125973782|ref|YP_001037692.1| two component LuxR family transcriptional regulator [Clostridium
           thermocellum ATCC 27405]
 gi|256004513|ref|ZP_05429492.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 2360]
 gi|281417939|ref|ZP_06248959.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum JW20]
 gi|125714007|gb|ABN52499.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum ATCC 27405]
 gi|255991518|gb|EEU01621.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 2360]
 gi|281409341|gb|EFB39599.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum JW20]
 gi|316940025|gb|ADU74059.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 1313]
          Length = 216

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  I++G  + EIA  L IS  TV N++++I +K     R+ A  YA ++N
Sbjct: 154 DLTPRELEVLELIAQGLINKEIAKRLFISEKTVKNHVSNIFKKLNVSDRTQAAIYAYKHN 213

Query: 245 I 245
           I
Sbjct: 214 I 214


>gi|284034369|ref|YP_003384300.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283813662|gb|ADB35501.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 199

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L  ++ G T+ EIA  L +S  TV NY++ I+ KT  ++R  AI  A
Sbjct: 136 DNPLTDRECEVLRQVTTGATAQEIARTLSLSAGTVRNYLSRILTKTGARSRIEAIRKA 193


>gi|171058317|ref|YP_001790666.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775762|gb|ACB33901.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 236

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE + L  + +G  + EI  +L IS NTVN Y+  + RK    +R+ A   A R  +
Sbjct: 175 LTGREEDVLRMMGKGHKAAEIGRLLAISVNTVNGYVREVYRKLGISSRAEAAIEATRRGL 234

Query: 246 V 246
           +
Sbjct: 235 L 235


>gi|157370075|ref|YP_001478064.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321839|gb|ABV40936.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 31/42 (73%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE + L W SEGKTS+E A+++G+S  TVN +I + ++K
Sbjct: 178 LTLREKDILRWCSEGKTSEETALLMGLSERTVNFHIGNSIKK 219


>gi|21311443|gb|AAM46724.1|AF452135_9 LuxR2 [Aliivibrio salmonicida]
          Length = 223

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE ECL W  EGK+  EI+ ILG S  TV  ++A+   K     R  +I+ A+
Sbjct: 158 KLTKREKECLIWSCEGKSRWEISKILGCSERTVTFHLANSQLKLGANNRCQSISKAI 214


>gi|319785576|ref|YP_004145052.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171464|gb|ADV15002.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 243

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 29/197 (14%)

Query: 72  QKLDSIVSSDWPFD-LVRCMALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNR 129
           Q+   ++  DWP + L R +A +  D +  V+    +L  P  +H   + I     +D  
Sbjct: 53  QQKQHVLLCDWPGEWLERYVARNYVD-HDPVVSHMKQLQAPFQWHEASQGIR----IDKS 107

Query: 130 YCSLTFDVARIRIGLMLLFP----KGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGK 182
              +  D    ++   L FP     G+I++     E   L+A    Q ++  +Y V  G+
Sbjct: 108 SGEVMGDAGAFKLRDGLAFPLITLDGQIVMVSLGGEAVELSAAEFGQVSLVSTYAV--GR 165

Query: 183 DFEL-------------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             +L             T RE ECL W + GK+  EI+ ILGIS +T   ++ +   K  
Sbjct: 166 AMQLHTMANRTIDHIVLTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLG 225

Query: 230 TKTRSGAIAYAVRNNIV 246
              R  A+A A+R   +
Sbjct: 226 AVNRVQAVAEAIRRGYI 242


>gi|300689864|ref|YP_003750859.1| transcriptional activator protein solR [Ralstonia solanacearum
           PSI07]
 gi|299076924|emb|CBJ49537.1| Transcriptional activator protein solR [Ralstonia solanacearum
           PSI07]
          Length = 236

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+
Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAI 231


>gi|224552939|gb|ACN54712.1| PagR [Pantoea agglomerans pv. gypsophilae]
 gi|224552942|gb|ACN54714.1| PagR [Pantoea agglomerans pv. gypsophilae]
          Length = 210

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|167564970|ref|ZP_02357886.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
 gi|167572172|ref|ZP_02365046.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    
Sbjct: 177 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 236

Query: 245 IV 246
           ++
Sbjct: 237 LI 238


>gi|134101943|ref|YP_001107604.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133914566|emb|CAM04679.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 156

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  +++G + +EIA  L  S  T+ N +   M++   + R+ A+AYA+R  I
Sbjct: 96  LTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILYQFMKRLGLRNRAHAVAYAIRLGI 155

Query: 246 V 246
           +
Sbjct: 156 I 156


>gi|299065227|emb|CBJ36393.1| Transcriptional activator protein solR [Ralstonia solanacearum
           CMR15]
          Length = 236

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   +
Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|237801455|ref|ZP_04589916.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024314|gb|EGI04371.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 77

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L W +EGKT+  IA+IL +   T++ +IAS ++K     ++ A   A
Sbjct: 17  LTQREIEVLKWSAEGKTAGAIAIILCLKERTIHFHIASAIQKMGVCNKTAAAVRA 71


>gi|224552903|gb|ACN54688.1| PagR [Pantoea agglomerans]
 gi|224552906|gb|ACN54690.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|261420594|ref|YP_003254276.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319768265|ref|YP_004133766.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261377051|gb|ACX79794.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317113131|gb|ADU95623.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 224

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K +   R+ A+  A++N 
Sbjct: 161 LTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLSVNDRTQAVVVAIKNG 219


>gi|224552945|gb|ACN54716.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|163735012|ref|ZP_02142449.1| two-component response regulator, putative [Roseobacter litoralis
           Och 149]
 gi|161391794|gb|EDQ16126.1| two-component response regulator, putative [Roseobacter litoralis
           Och 149]
          Length = 303

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F LT RE E L W+S GK + +IA IL +S  T+N ++  + +K     R+ A   A R
Sbjct: 240 FGLTPREAEVLYWLSLGKPNRDIAQILSLSSRTINKHLEQVFQKMGVDNRTAAAVAADR 298


>gi|5162957|gb|AAD40485.1|AF079973_1 luxR homolog YpsR [Yersinia pseudotuberculosis]
          Length = 245

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIA+ILGI ++TV  +I +I+RK        AI   + 
Sbjct: 182 FSPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIE 238


>gi|83716463|ref|YP_440275.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650288|gb|ABC34352.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 425

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    
Sbjct: 364 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 423

Query: 245 IV 246
           ++
Sbjct: 424 LI 425


>gi|126433549|ref|YP_001069240.1| response regulator receiver protein [Mycobacterium sp. JLS]
 gi|126233349|gb|ABN96749.1| response regulator receiver protein [Mycobacterium sp. JLS]
          Length = 207

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I+EG  + EIA  L  S+ TV N +  +  +   + RS A+AYAVR  +
Sbjct: 147 LTDREIKVLRLIAEGHDTSEIAQQLCYSQRTVKNVLHDVTTRLQLRNRSHAVAYAVREGL 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|332162143|ref|YP_004298720.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|1723596|sp|P54295|YENR_YEREN RecName: Full=Transcriptional activator protein yenR
 gi|773400|emb|CAA53694.1| yenR [Yersinia enterocolitica]
 gi|318606195|emb|CBY27693.1| quorum-sensing transcriptional activator YpeR [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325666373|gb|ADZ43017.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330864049|emb|CBX74127.1| transcriptional activator protein yenR [Yersinia enterocolitica
           W22703]
          Length = 244

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           +L  YQ+N  K+ + +   + ++ + RE E L W S GKT  EI++ILGI R+TV  +I 
Sbjct: 158 MLGLYQSNSDKNENRNTQIERDIFSPRENEILYWASVGKTYAEISIILGIKRSTVKFHIG 217

Query: 223 SIMRKTATKTRSGAIAYAV 241
           +++RK        AI   +
Sbjct: 218 NVVRKLGVLNAKHAIRLGI 236


>gi|224552948|gb|ACN54718.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|159044364|ref|YP_001533158.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912124|gb|ABV93557.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 265

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE E L W++ GK+   IA ILG+S +TV+  +  I RK     R+ AI  A+ 
Sbjct: 194 EIALSARETEVLGWMARGKSKTVIADILGLSPHTVDTLVRRIFRKLEVFDRTAAILKAIN 253

Query: 243 NNIV 246
             +V
Sbjct: 254 LGLV 257


>gi|22298266|ref|NP_681513.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294445|dbj|BAC08275.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 209

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D+ L+ RE++ L  + EG ++ EIA  L +S NTV  ++  I+ K A   R  A   A+R
Sbjct: 146 DYHLSQRELDVLKLMVEGYSNPEIAGKLFLSPNTVKTHVRGILNKLAVDDRVQAAVVALR 205

Query: 243 NNIV 246
           N +V
Sbjct: 206 NGLV 209


>gi|257867775|ref|ZP_05647428.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257874102|ref|ZP_05653755.1| regulatory protein [Enterococcus casseliflavus EC10]
 gi|257801858|gb|EEV30761.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257808266|gb|EEV37088.1| regulatory protein [Enterococcus casseliflavus EC10]
          Length = 209

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ 
Sbjct: 147 DLTNREQEVLLLIAEGKSNQEIADALFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHG 206

Query: 245 IV 246
           ++
Sbjct: 207 LI 208


>gi|224552981|gb|ACN54740.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|17548004|ref|NP_521406.1| transcriptional activator SOLR transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|20140008|sp|P58590|SOLR1_RALSO RecName: Full=Transcriptional activator protein solR
 gi|17430310|emb|CAD17075.1| transcriptional activator solr. transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 236

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   +
Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|296268221|ref|YP_003650853.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091008|gb|ADG86960.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 206

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  I+ G+++ EIA  L ++  TV  ++++++ K   + R+ A  YAVR
Sbjct: 143 EIALTAREREVLRLIAAGRSNREIARELSVAEKTVKTHVSNVLMKLGVQDRTQAALYAVR 202

Query: 243 NNIV 246
             +V
Sbjct: 203 RGLV 206


>gi|291007045|ref|ZP_06565018.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 175

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  +++G + +EIA  L  S  T+ N +   M++   + R+ A+AYA+R  I
Sbjct: 115 LTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILYQFMKRLGLRNRAHAVAYAIRLGI 174

Query: 246 V 246
           +
Sbjct: 175 I 175


>gi|196229624|ref|ZP_03128488.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225950|gb|EDY20456.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L GREVE L  +++G    EI   LGIS +TVN++I  I  K   ++RS A+A
Sbjct: 154 LAGREVEVLGLLAQGYLYKEIGESLGISTHTVNSHIRRIYEKLHVRSRSQAVA 206


>gi|333029774|ref|ZP_08457835.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM
           18011]
 gi|332740371|gb|EGJ70853.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM
           18011]
          Length = 206

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 167 AYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A++ N  K+ + ++  +  EL+ RE++ ++ I+ GKT+ EIA  L IS+ TV  +  +I 
Sbjct: 121 AHEPNHSKNMEAINAHQVHELSPREIDVISLIAVGKTNKEIAKKLSISQTTVITHRKNIT 180

Query: 226 RKTATKTRSGAIAYAVRN 243
            K   K+ SG   YAV N
Sbjct: 181 DKLGIKSVSGLTIYAVIN 198


>gi|302521432|ref|ZP_07273774.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302430327|gb|EFL02143.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 264

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 201 LTDREMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 260

Query: 246 V 246
           +
Sbjct: 261 L 261


>gi|229916670|ref|YP_002885316.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
 gi|229468099|gb|ACQ69871.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 39/57 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ REVE L  +++G+++ +I+ +L IS  TV N+++S++RK     R+ A+  A+R
Sbjct: 168 LSRREVEVLHLLADGRSNRDISDMLFISEKTVKNHVSSVLRKMDVNDRTQAVVDAIR 224


>gi|320106060|ref|YP_004181650.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924581|gb|ADV81656.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 207

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G+++ EIA  L I+  TV  +++S++ K   + R+ A  YA++  
Sbjct: 143 ELTPRESEVLICITQGRSNREIAEQLRIAEKTVRIHVSSVLDKMGARDRTQATIYALQRG 202

Query: 245 IV 246
           +V
Sbjct: 203 LV 204


>gi|158333709|ref|YP_001514881.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158303950|gb|ABW25567.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 209

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I+EG+++ EIA  L IS  TV N++ SI+++   + R+ A   A
Sbjct: 148 ELTPRETEVLALIAEGQSNREIAEALYISERTVKNHVNSILKRLNVRDRTQAAILA 203


>gi|254777627|ref|ZP_05219143.1| hypothetical protein MaviaA2_23561 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 218

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ LT I +G ++ EIA  L IS  TV ++I  I  K   + R+ AI YA  N 
Sbjct: 154 ELTTRELDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNG 213

Query: 245 IV 246
           IV
Sbjct: 214 IV 215


>gi|284991375|ref|YP_003409929.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064620|gb|ADB75558.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 219

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I+EG +S EIA +L IS  TV  + A+I++K   + R+    YA+R  +
Sbjct: 157 LTAREAEVVKLIAEGCSSREIAALLVISTKTVERHRANILQKLDMRDRTQLTRYAIRTGL 216

Query: 246 V 246
           +
Sbjct: 217 L 217


>gi|229087841|ref|ZP_04219955.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228695477|gb|EEL48348.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 189

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|224552951|gb|ACN54720.1| PagR [Pantoea agglomerans]
 gi|224552954|gb|ACN54722.1| PagR [Pantoea agglomerans]
 gi|224552957|gb|ACN54724.1| PagR [Pantoea agglomerans]
 gi|224552960|gb|ACN54726.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|224552936|gb|ACN54710.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|254410670|ref|ZP_05024449.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182876|gb|EDX77861.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 216

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  ++ G ++ EI   L +S  T+  Y++S++RKT T  R+  + +A+ N
Sbjct: 153 LHLTQREQQVLDLLTTGLSNSEIGNKLHLSPRTIEKYVSSLLRKTETSNRAEIVRFALEN 212

Query: 244 NIV 246
           ++V
Sbjct: 213 HLV 215


>gi|224552978|gb|ACN54738.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNVFLSPRERQILKWVXAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|218528264|ref|YP_002419080.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218520567|gb|ACK81152.1| transcriptional regulator, LuxR family [Methylobacterium
           chloromethanicum CM4]
          Length = 500

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I +G T  EIA  LG+S +TV N++AS+ RK     RS  + +A    
Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484

Query: 245 I 245
           I
Sbjct: 485 I 485


>gi|26990830|ref|NP_746255.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148546967|ref|YP_001267069.1| LuxR family transcriptional regulator [Pseudomonas putida F1]
 gi|24985838|gb|AAN69719.1|AE016608_5 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
 gi|148511025|gb|ABQ77885.1| regulatory protein, LuxR [Pseudomonas putida F1]
 gi|313498014|gb|ADR59380.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 82

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE + L W + GK+S EI  IL    +TVN ++++I+RK    TR  A+  A+R
Sbjct: 19  LTPREQQVLLWCAYGKSSWEIGQILECKESTVNFHVSNILRKFEVPTRVAAVIKAIR 75


>gi|314934012|ref|ZP_07841377.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
 gi|313654162|gb|EFS17919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
          Length = 207

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REVE L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|254822986|ref|ZP_05227987.1| hypothetical protein MintA_23864 [Mycobacterium intracellulare ATCC
           13950]
          Length = 518

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L IS  T  N++     K     R GA  YA+R+ +
Sbjct: 453 LTPREVEVLCLVARGASNKEIAASLVISEKTARNHVERTYAKIGVSNRIGASMYALRHGL 512

Query: 246 V 246
           V
Sbjct: 513 V 513


>gi|240140620|ref|YP_002965100.1| putative transcriptional regulator, PAS domain S-box
           [Methylobacterium extorquens AM1]
 gi|240010597|gb|ACS41823.1| putative transcriptional regulator, PAS domain S-box
           [Methylobacterium extorquens AM1]
          Length = 500

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I +G T  EIA  LG+S +TV N++AS+ RK     RS  + +A    
Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484

Query: 245 I 245
           I
Sbjct: 485 I 485


>gi|13471875|ref|NP_103442.1| hypothetical protein mll1989 [Mesorhizobium loti MAFF303099]
 gi|14022619|dbj|BAB49228.1| mll1989 [Mesorhizobium loti MAFF303099]
          Length = 525

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E L  I+ G T+ E+A  L IS  T +++I S+  K    TR+ A  YAV + +
Sbjct: 458 MTPREIEVLRLIATGLTAKEVARKLDISPKTADHHIESVYSKIGVTTRAAAALYAVEHGL 517

Query: 246 V 246
           V
Sbjct: 518 V 518


>gi|220933015|ref|YP_002509923.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
 gi|219994325|gb|ACL70928.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
          Length = 211

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE E L  +++G ++ +IA  L IS  TV N++++I+RK +   R+ A+  A++  
Sbjct: 147 ELSSREQEVLELLAQGMSNKQIAQELFISEKTVKNHVSNILRKLSVNDRTQAVIVALKRG 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|318056754|ref|ZP_07975477.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078616|ref|ZP_07985948.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333024919|ref|ZP_08452983.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744771|gb|EGJ75212.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 250

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 187 LTDREMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246

Query: 246 V 246
           +
Sbjct: 247 L 247


>gi|196040971|ref|ZP_03108268.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196028139|gb|EDX66749.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 71

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 5   WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 64

Query: 240 A 240
           A
Sbjct: 65  A 65


>gi|325474944|gb|EGC78130.1| hypothetical protein HMPREF9353_00977 [Treponema denticola F0402]
          Length = 140

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +F L+ +E+E +  +SEG ++ +IA   G+S  T+ N I+ I  KT    R+   A+A +
Sbjct: 77  EFGLSQKEIEIIRLVSEGLSNKQIAYKQGLSEGTIKNNISVIFDKTFVSDRTQLAAFAFK 136

Query: 243 NNIV 246
           N IV
Sbjct: 137 NGIV 140


>gi|254563130|ref|YP_003070225.1| transcriptional regulator, PAS domain S-box [Methylobacterium
           extorquens DM4]
 gi|254270408|emb|CAX26408.1| putative transcriptional regulator, PAS domain S-box
           [Methylobacterium extorquens DM4]
          Length = 500

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I +G T  EIA  LG+S +TV N++AS+ RK     RS  + +A    
Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484

Query: 245 I 245
           I
Sbjct: 485 I 485


>gi|251787751|ref|YP_003002472.1| LuxR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536372|gb|ACT04993.1| transcriptional regulator, LuxR family [Dickeya zeae Ech1591]
          Length = 250

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N+
Sbjct: 180 FSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|118465118|ref|YP_884392.1| two-component system response regulator [Mycobacterium avium 104]
 gi|118166405|gb|ABK67302.1| two-component system response regulator [Mycobacterium avium 104]
          Length = 218

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     ELT RE + LT I +G ++ EIA  L IS  TV ++I  I  K   + R+ AI 
Sbjct: 148 HGAAIAELTTRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIV 207

Query: 239 YAVRNNIV 246
           YA  N IV
Sbjct: 208 YAYDNGIV 215


>gi|329935276|ref|ZP_08285242.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305099|gb|EGG48958.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 248

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +DF L+ REVE +  I+ G  + +IA    IS  TV N+I  I  K  + +RS AIA+
Sbjct: 180 RDFGLSSREVEVMDLIASGMNNRQIAATCFISEKTVKNHINRIFAKLHSASRSEAIAH 237


>gi|284042697|ref|YP_003393037.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946918|gb|ADB49662.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+E  T+D+IA+ L I+R TV  + A+I+ K   + R     YA+R  +
Sbjct: 158 LTPREREVLKLIAEAHTNDQIALELQIARRTVERHRANILAKLHMRDRVELTRYAIRRGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|149181561|ref|ZP_01860055.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1]
 gi|148850675|gb|EDL64831.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1]
          Length = 199

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +G+   LT RE+E L  +++GK + EIA  L I   TV NYI++I+ K   K R  AI
Sbjct: 132 YGEGNPLTVREIEVLELVADGKNTKEIADELSIKTGTVRNYISTILDKLQVKNRIEAI 189


>gi|123441908|ref|YP_001005891.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088869|emb|CAL11676.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 244

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           +L  YQ+N  K+ + +   + ++ + RE E L W S GKT  EI++ILGI R+TV  +I 
Sbjct: 158 MLGLYQSNSDKNENRNPKIERDIFSPRENEILYWASVGKTYAEISIILGIKRSTVKFHIG 217

Query: 223 SIMRKTATKTRSGAIAYAV 241
           +++RK        AI   +
Sbjct: 218 NVVRKLGVLNAKHAIRLGI 236


>gi|229130601|ref|ZP_04259557.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|6759482|emb|CAB69808.1| putative two-component response regulator [Bacillus cereus ATCC
           14579]
 gi|228652940|gb|EEL08822.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 159

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 93  WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 152

Query: 240 A 240
           A
Sbjct: 153 A 153


>gi|34499545|ref|NP_903760.1| LuxR/UhpA family transcriptional regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|327200688|pdb|3QP6|A Chain A, Crystal Structure Of Cvir (Chromobacterium Violaceum
           12472) Bound To C6-Hsl
 gi|34332902|gb|AAQ61750.2| transcriptional activator, LuxR/UhpA family of regulators
           [Chromobacterium violaceum ATCC 12472]
          Length = 265

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE +   W+S GKT+ EIA IL IS  TV  ++A+++RK     R+ AI   + 
Sbjct: 195 NMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKLNANNRTHAIVLGMH 254


>gi|30314824|emb|CAD70192.1| putative HTH_LUXR domain-containing transcription activator
           [Pseudomonas syringae]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F +T RE E   W + GKT +EIAVIL IS+ TV+ +I++++ K   +T+
Sbjct: 176 FTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTK 225


>gi|83716915|ref|YP_439706.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|167578146|ref|ZP_02371020.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167616276|ref|ZP_02384911.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257142845|ref|ZP_05591107.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650740|gb|ABC34804.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|289678710|ref|ZP_06499600.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. syringae FF5]
          Length = 74

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT R++E L  I  GK++ EIAV LG+S  T+  + A +M++      +G + + VR 
Sbjct: 8   FRLTARQLEILRLIVRGKSTREIAVGLGLSIKTIETHRAQVMKRLQIFDVAGLVLFCVRE 67

Query: 244 NIV 246
            I+
Sbjct: 68  RII 70


>gi|229043280|ref|ZP_04191002.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676]
 gi|229078723|ref|ZP_04211277.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2]
 gi|228704596|gb|EEL57028.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2]
 gi|228726141|gb|EEL77376.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676]
          Length = 199

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 137 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 196

Query: 245 I 245
           +
Sbjct: 197 L 197


>gi|229084537|ref|ZP_04216810.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44]
 gi|228698773|gb|EEL51485.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44]
          Length = 196

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 134 DLTEREFEILMLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 193

Query: 245 I 245
           +
Sbjct: 194 L 194


>gi|223043570|ref|ZP_03613615.1| two-component response regulator [Staphylococcus capitis SK14]
 gi|222443058|gb|EEE49158.1| two-component response regulator [Staphylococcus capitis SK14]
          Length = 207

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REVE L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|163853215|ref|YP_001641258.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163664820|gb|ABY32187.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 500

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I +G T  EIA  LG+S +TV N++AS+ RK     RS  + +A    
Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484

Query: 245 I 245
           I
Sbjct: 485 I 485


>gi|121603888|ref|YP_981217.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120592857|gb|ABM36296.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 336

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F+LT RE E L W+ +GK + +I  ILG S  T+  ++  +  K   +TR+ A   A+
Sbjct: 267 FKLTAREAEVLYWVVKGKVNRDIGDILGASPATIKKHLERVYAKLGVETRTAAAGRAM 324


>gi|52787183|ref|YP_093012.1| YvqC [Bacillus licheniformis ATCC 14580]
 gi|163119642|ref|YP_080588.2| two-component response regulator LiaR [Bacillus licheniformis ATCC
           14580]
 gi|319647713|ref|ZP_08001931.1| YvqC protein [Bacillus sp. BT1B_CT2]
 gi|52349685|gb|AAU42319.1| YvqC [Bacillus licheniformis ATCC 14580]
 gi|145903152|gb|AAU24950.2| two-component response regulator LiaR [Bacillus licheniformis ATCC
           14580]
 gi|317390054|gb|EFV70863.1| YvqC protein [Bacillus sp. BT1B_CT2]
          Length = 211

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EGKT+  IA  L I+  TV  ++ +I+ K     R+ A  YA RN +
Sbjct: 150 LTARELEILKLVAEGKTNKGIAEELYITIKTVKTHVTNILSKLEVDDRTQAAIYAHRNKL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|310659232|ref|YP_003936953.1| degu [Clostridium sticklandii DSM 519]
 gi|308826010|emb|CBH22048.1| DegU [Clostridium sticklandii]
          Length = 211

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S ++  G D  LT RE E L  I+EG ++ +I+  L IS  TV N+++SI+RK   + R+
Sbjct: 139 SRNIKSGVD-SLTRREYEVLLLIAEGMSNKDISDHLVISEKTVKNHVSSILRKLDLQDRT 197

Query: 235 GAIAYAVRNNI 245
            A  +A++  +
Sbjct: 198 QAAIFAIKQKL 208


>gi|298243907|ref|ZP_06967714.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297556961|gb|EFH90825.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 514

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE E L  +SEG T+  IA  L IS  TV  +I  IM+K   + R+ A+A A++ 
Sbjct: 452 LELTEREREVLRLMSEGLTNRAIASRLLISIETVKTHIHHIMQKLQARDRTQAVALAMKY 511

Query: 244 NIV 246
            ++
Sbjct: 512 GLI 514


>gi|327200684|pdb|3QP5|A Chain A, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200685|pdb|3QP5|B Chain B, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200686|pdb|3QP5|C Chain C, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200687|pdb|3QP5|D Chain D, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|288973234|gb|ADC79709.1| CviR transcriptional regulator [Chromobacterium violaceum]
          Length = 265

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  L+ RE +   W+S GKT+ EIA IL IS  TV  ++A+++RK     R+ AI
Sbjct: 195 NMPLSQREYDIFHWMSRGKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAI 249


>gi|229069092|ref|ZP_04202384.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185]
 gi|228714037|gb|EEL65920.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185]
          Length = 151

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 89  DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 148

Query: 245 I 245
           +
Sbjct: 149 L 149


>gi|218781259|ref|YP_002432577.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762643|gb|ACL05109.1| transcriptional regulator, LuxR family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 287

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG T+ EI+ +L IS +TV +++  +  K     R+ A  +A +NN+
Sbjct: 227 LTTREIQVLRLMAEGFTNGEISDMLEISPHTVKSHVIHVFNKLGVNDRTQAAVWAAKNNL 286

Query: 246 V 246
           V
Sbjct: 287 V 287


>gi|326318213|ref|YP_004235885.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375049|gb|ADX47318.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 361

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F LT RE E L W+ +GKT+ +I  ILG S  TV  ++  +  K   +TR+ A   A+
Sbjct: 292 FRLTAREAEVLYWLLKGKTNRDIGDILGSSPATVKKHLERVYVKLGVETRTAAAGIAM 349


>gi|302544912|ref|ZP_07297254.1| nitrate/nitrite response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462530|gb|EFL25623.1| nitrate/nitrite response regulator [Streptomyces himastatinicus
           ATCC 53653]
          Length = 249

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 186 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 245

Query: 246 V 246
           +
Sbjct: 246 L 246


>gi|228907170|ref|ZP_04071032.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL
           200]
 gi|228852502|gb|EEM97294.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL
           200]
          Length = 199

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 137 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 196

Query: 245 I 245
           +
Sbjct: 197 L 197


>gi|229108996|ref|ZP_04238597.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15]
 gi|228674465|gb|EEL29708.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15]
          Length = 196

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 134 DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 193

Query: 245 I 245
           +
Sbjct: 194 L 194


>gi|119489708|ref|ZP_01622467.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC
           8106]
 gi|119454445|gb|EAW35594.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC
           8106]
          Length = 100

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 42/61 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ +  I+ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   +++A+++  
Sbjct: 12  LSDRELQVVDLIATGLTNQEIAEQLEISKRTVDNHISNILTKTETENRVALVSWALKSGK 71

Query: 246 V 246
           V
Sbjct: 72  V 72


>gi|94968718|ref|YP_590766.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550768|gb|ABF40692.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 208

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT RE+E L  I  GK++ EIA  L +S NTV+ + A+IM        +  + YA+
Sbjct: 141 KSMGLTNRELEILQLIVSGKSNKEIASDLSLSVNTVSVHRANIMEGLGIHNTAELVVYAI 200

Query: 242 RNNIV 246
           +N +V
Sbjct: 201 KNGLV 205


>gi|56964906|ref|YP_176637.1| two-component response regulator of extracellular proteinase
           [Bacillus clausii KSM-K16]
 gi|56911149|dbj|BAD65676.1| two-component response regulator of extracellular proteinase
           [Bacillus clausii KSM-K16]
          Length = 219

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  IS GK++ EIA  L IS  TV  ++++++ K   + R+ A  +A++  I
Sbjct: 150 LTDREVDVLKEISTGKSNKEIAAALFISEKTVKTHVSNLLGKLELQDRTQAALFAIQAGI 209


>gi|302390092|ref|YP_003825913.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200720|gb|ADL08290.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
          Length = 327

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT +E +    ++ GKT+ EIA  L +S  TV NY++ I+RK     RS  ++YA++N
Sbjct: 265 LTAQEQKVFYALALGKTNKEIASELYLSPATVRNYVSKILRKLNLPNRSAVVSYAMKN 322


>gi|317054417|ref|YP_004118442.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
 gi|316952412|gb|ADU71886.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
          Length = 241

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 156 RDRLWEIGLLAAYQANMFKSY----DVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           +DR    GLL      M   Y    + H  ++  L+ RE E L W S GKT  EIA +L 
Sbjct: 141 KDRHDLQGLLIDTHEMMLHLYRDESERHKSEENMLSSRENEILYWSSTGKTYPEIAHMLN 200

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ +TV  ++  I++K        AI+ A+  NI+
Sbjct: 201 ITVSTVKFHMGKIVKKMGVNNAKHAISLAIELNII 235


>gi|299822491|ref|ZP_07054377.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299816020|gb|EFI83258.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 212

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+EGK + EIA  L I+  TV  ++++I+ K   + R+ A  YA +++
Sbjct: 148 ELTNRENEILLLIAEGKANQEIADELYITLKTVKTHVSNILSKLDVQDRTQAAIYAFQHD 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|167565578|ref|ZP_02358494.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|227820412|ref|YP_002824383.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227339411|gb|ACP23630.1| probable two-component response regulator protein [Sinorhizobium
           fredii NGR234]
          Length = 305

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F LT RE E L WI++GK++ +I  ILG+S  TV  ++  I  K   + R+ A   A 
Sbjct: 240 QHFHLTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKAT 299

Query: 242 R 242
           +
Sbjct: 300 Q 300


>gi|284034837|ref|YP_003384768.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283814130|gb|ADB35969.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 219

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE+E L  +++G ++ EIA  L IS  TV  Y++ I+ K   + R  A+ YA R
Sbjct: 155 EVPLTPRELEVLLLMADGLSNSEIAATLVISHETVKTYVSRILTKLDLRDRVQAVVYAYR 214

Query: 243 NNIV 246
             +V
Sbjct: 215 RGLV 218


>gi|13488084|ref|NP_085693.1| two-component regulator [Mesorhizobium loti MAFF303099]
 gi|14027942|dbj|BAB54534.1| two-component regulator [Mesorhizobium loti MAFF303099]
          Length = 812

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE + L  + EG  +  IAV+LG+S  TV  ++ ++ RK   +TR  AI+ A    
Sbjct: 750 ELSRRENKILVIVCEGAANKSIAVMLGVSEATVKFHLGNVYRKLGCRTRQEAISIARATG 809

Query: 245 IV 246
           IV
Sbjct: 810 IV 811


>gi|47093968|ref|ZP_00231703.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|258611471|ref|ZP_05711518.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|47017667|gb|EAL08465.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|258600349|gb|EEW13674.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
          Length = 171

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++
Sbjct: 107 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 166

Query: 245 IV 246
           +V
Sbjct: 167 LV 168


>gi|53717160|ref|YP_105961.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           mallei ATCC 23344]
 gi|53721911|ref|YP_110896.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|67643283|ref|ZP_00442030.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei GB8 horse 4]
 gi|76818142|ref|YP_337635.1| BpsR [Burkholderia pseudomallei 1710b]
 gi|121598108|ref|YP_989940.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei SAVP1]
 gi|124382764|ref|YP_001024423.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10229]
 gi|126442328|ref|YP_001062292.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 668]
 gi|126445689|ref|YP_001078154.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10247]
 gi|126458533|ref|YP_001075258.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106a]
 gi|134278985|ref|ZP_01765698.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 305]
 gi|167000171|ref|ZP_02265991.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei PRL-20]
 gi|167723232|ref|ZP_02406468.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei DM98]
 gi|167742204|ref|ZP_02414978.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 14]
 gi|167819378|ref|ZP_02451058.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 91]
 gi|167827752|ref|ZP_02459223.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 9]
 gi|167849226|ref|ZP_02474734.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei B7210]
 gi|167906168|ref|ZP_02493373.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914491|ref|ZP_02501582.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 112]
 gi|167922390|ref|ZP_02509481.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei BCC215]
 gi|217418339|ref|ZP_03449846.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 576]
 gi|226197543|ref|ZP_03793118.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507418|ref|ZP_04520133.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei MSHR346]
 gi|242313785|ref|ZP_04812802.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106b]
 gi|254174155|ref|ZP_04880817.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei ATCC 10399]
 gi|254183341|ref|ZP_04889933.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1655]
 gi|254193094|ref|ZP_04899529.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei S13]
 gi|254200806|ref|ZP_04907171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei FMH]
 gi|254204776|ref|ZP_04911129.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei JHU]
 gi|254263057|ref|ZP_04953922.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1710a]
 gi|254300240|ref|ZP_04967686.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 406e]
 gi|254357025|ref|ZP_04973300.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei 2002721280]
 gi|37223137|gb|AAQ90167.1| transcriptional activator [Burkholderia pseudomallei]
 gi|40646736|gb|AAR88244.1| BpsR [Burkholderia pseudomallei]
 gi|43469096|gb|AAS46624.1| BpsR [Burkholderia pseudomallei]
 gi|52212325|emb|CAH38349.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|52423130|gb|AAU46700.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           mallei ATCC 23344]
 gi|76582615|gb|ABA52089.1| BpsR [Burkholderia pseudomallei 1710b]
 gi|121225906|gb|ABM49437.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei SAVP1]
 gi|124290784|gb|ABN00054.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10229]
 gi|126221819|gb|ABN85324.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 668]
 gi|126232301|gb|ABN95714.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106a]
 gi|126238543|gb|ABO01655.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10247]
 gi|134249404|gb|EBA49485.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 305]
 gi|147748418|gb|EDK55493.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei FMH]
 gi|147754362|gb|EDK61426.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei JHU]
 gi|148026052|gb|EDK84175.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei 2002721280]
 gi|157809975|gb|EDO87145.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 406e]
 gi|160695201|gb|EDP85171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei ATCC 10399]
 gi|169649848|gb|EDS82541.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei S13]
 gi|184213874|gb|EDU10917.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1655]
 gi|217397643|gb|EEC37658.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 576]
 gi|225930152|gb|EEH26164.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999623|gb|EEP49047.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei MSHR346]
 gi|238524594|gb|EEP88026.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei GB8 horse 4]
 gi|242137024|gb|EES23427.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106b]
 gi|243063823|gb|EES46009.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei PRL-20]
 gi|254214059|gb|EET03444.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1710a]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|315618207|gb|EFU98797.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 3431]
          Length = 216

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ S+ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYSLFKKIAVKNRTQAVSWANDN 213


>gi|258650584|ref|YP_003199740.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258553809|gb|ACV76751.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 524

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L   + G++S +IA  L IS  T  N++  I  KT    R+GA  +AV++ I
Sbjct: 457 LTAREEQVLALAAVGRSSRQIAAELTISEKTARNHLEHIYTKTGVSNRAGASLFAVQHGI 516

Query: 246 V 246
           V
Sbjct: 517 V 517


>gi|229029217|ref|ZP_04185310.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271]
 gi|228732125|gb|EEL83014.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271]
          Length = 204

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ 
Sbjct: 142 DLTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQ 201

Query: 245 I 245
           +
Sbjct: 202 L 202


>gi|222530583|ref|YP_002574465.1| LuxR family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222457430|gb|ACM61692.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 211

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE+E    IS+G ++ EIA +L IS  TV NYI SI++K   K R+    Y
Sbjct: 152 LTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|254430340|ref|ZP_05044043.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001]
 gi|197624793|gb|EDY37352.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001]
          Length = 99

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 42/65 (64%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   ++ +L+ RE+E +  ++EG T+ EIA  L IS+ TV+N++++I  KT  K R   
Sbjct: 14  ELQQSQERDLSERELEIIALVAEGLTNQEIAGTLTISKRTVDNHVSNIFTKTGAKNRVAL 73

Query: 237 IAYAV 241
           + +A+
Sbjct: 74  LNWAM 78


>gi|218900478|ref|YP_002448889.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543280|gb|ACK95674.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 200

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|167897824|ref|ZP_02485226.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 7894]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|27376076|ref|NP_767605.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27349215|dbj|BAC46230.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 306

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  LT RE E L W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R
Sbjct: 241 ELGLTTREGEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 291


>gi|302038204|ref|YP_003798526.1| hypothetical protein NIDE2901 [Candidatus Nitrospira defluvii]
 gi|300606268|emb|CBK42601.1| protein of unknown function, putative Transcriptional regulator
           [Candidatus Nitrospira defluvii]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F+LT RE   +  +++G T+ EIA  L I+  TV  +I  IMRKT + TR+G +    R+
Sbjct: 144 FQLTNREQSVVENLAKGWTNKEIANALKITEQTVKEHIKHIMRKTNSTTRTGVLVQVFRS 203


>gi|254444586|ref|ZP_05058062.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198258894|gb|EDY83202.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 200

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V   KD  LT RE E L  I+EG ++ EIA  LG+S  TV+N+  ++MRK      +  
Sbjct: 126 NVQRSKD-TLTEREREVLQMIAEGHSTKEIAKKLGLSVKTVDNHRTNMMRKLDLHNVASI 184

Query: 237 IAYAVRNNIV 246
             YA++N ++
Sbjct: 185 TRYAMQNGLI 194


>gi|90023140|ref|YP_528967.1| LuxR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952740|gb|ABD82755.1| transcriptional regulator, LuxR family [Saccharophagus degradans
           2-40]
          Length = 247

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +   Y A M K   +   K   LT RE E L W  EGKT+ EI+ IL +S  TV  +++S
Sbjct: 164 VFECYSALMLK---LAQNKQTHLTAREKESLFWACEGKTTWEISKILDVSERTVIFHLSS 220

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
              K     R  A+A A+ + ++
Sbjct: 221 ATSKLGAVNRQHAVAKAILSGLI 243


>gi|332978141|gb|EGK14877.1| transcriptional regulatory protein DegU [Desmospora sp. 8437]
          Length = 92

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I+++M+K   K RS A+   VR
Sbjct: 30  LTNREREVFELLVQDKTTKEIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELVR 86


>gi|33860714|ref|NP_892275.1| LuxR family regulatory protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633656|emb|CAE18613.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 92

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 39/56 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+
Sbjct: 16  LSSREMEIINLVADGLTNQEIAVRLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 71


>gi|89092629|ref|ZP_01165582.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
 gi|89083141|gb|EAR62360.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
          Length = 217

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE + L  ++EG ++ EIA  L IS  TV  +  +I  K    T +G   YA+ NN+
Sbjct: 156 LTGREKDVLKLVAEGNSNKEIARTLDISVRTVETHRQNIKNKLDIHTAAGLTRYAIDNNL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|67922881|ref|ZP_00516379.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67855305|gb|EAM50566.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 221

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I EGK++++IA  L +S NT+  ++  IM K A   R  A   A+R+ +
Sbjct: 161 LSERELEVLKLIVEGKSNNQIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|67921004|ref|ZP_00514523.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67857121|gb|EAM52361.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 231

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           FELT RE E L  ++ G ++ EI   L +S  T+  Y++S++RKT T  R+  + +A  +
Sbjct: 161 FELTRRESEVLDLLTMGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFAFDH 220

Query: 244 NIV 246
           ++ 
Sbjct: 221 HLA 223


>gi|251783082|ref|YP_002997385.1| putative two-component response regulator [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391712|dbj|BAH82171.1| putative two-component response regulator [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 215

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K++D H     ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     
Sbjct: 137 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 196

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA R+++V
Sbjct: 197 RTQAVVYAFRHHLV 210


>gi|242374097|ref|ZP_04819671.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348222|gb|EES39824.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 207

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REVE L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|209809708|ref|YP_002265247.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
 gi|208011271|emb|CAQ81712.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
          Length = 247

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE ECL W  EGK+  EI+ ILG S  TV  ++A+   K     R  +I+ A+
Sbjct: 182 KLTKREKECLIWSCEGKSRWEISKILGCSERTVTFHLANSQLKLGANNRCQSISKAI 238


>gi|123965417|ref|YP_001010498.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9515]
 gi|123199783|gb|ABM71391.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9515]
          Length = 92

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 39/56 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+
Sbjct: 16  LSSREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 71


>gi|332978068|gb|EGK14806.1| nitrate/nitrite response regulator protein NarL [Desmospora sp.
           8437]
          Length = 216

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  + +G ++ EIA  L IS  TV  ++++I++K   K+RS AI YA+++ +
Sbjct: 153 LTPRELDVLNLMVKGLSNKEIAEQLFISDKTVKIHVSNILKKLRVKSRSQAIIYAIQHEL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|319948854|ref|ZP_08022967.1| regulatory protein, LuxR [Dietzia cinnamea P4]
 gi|319437456|gb|EFV92463.1| regulatory protein, LuxR [Dietzia cinnamea P4]
          Length = 203

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L  I++G ++++IA    +S NTV +YI    RK    TR  A+A+A++
Sbjct: 137 DSGLSPREAEMLALIAQGLSNEDIATACYLSINTVKSYIRDAYRKIGVTTRPQAVAWALK 196

Query: 243 NN 244
           N 
Sbjct: 197 NG 198


>gi|284030413|ref|YP_003380344.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283809706|gb|ADB31545.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 208

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 34/58 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L  I  G T+ E+A IL +S  TV NY++ I+ KT  ++R  AI  A
Sbjct: 145 DNPLTERECEVLRLIGTGATAQEVAQILCLSPGTVRNYLSRILSKTGARSRIEAIRKA 202


>gi|239981891|ref|ZP_04704415.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 243

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 180 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 239

Query: 246 V 246
           +
Sbjct: 240 L 240


>gi|114798675|ref|YP_760164.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114738849|gb|ABI76974.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC
           15444]
          Length = 137

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  EL+ ++V CL W+  GKT  EIA I+  S NTV  +I + ++      R+ A+  A
Sbjct: 72  ARPAELSPQQVTCLRWVKAGKTDQEIAEIILCSVNTVRYHIKTALKDLGASNRTHAVVLA 131

Query: 241 VRNNIV 246
           + + ++
Sbjct: 132 IEHRLI 137


>gi|49480425|ref|YP_039344.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196036499|ref|ZP_03103894.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218906530|ref|YP_002454364.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|300117868|ref|ZP_07055635.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301056821|ref|YP_003795032.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|49331981|gb|AAT62627.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195990832|gb|EDX54805.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218538999|gb|ACK91397.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|298724732|gb|EFI65407.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300378990|gb|ADK07894.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|163943040|ref|YP_001647924.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865237|gb|ABY46296.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|84494899|ref|ZP_00994018.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649]
 gi|84384392|gb|EAQ00272.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649]
          Length = 937

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG ++ +++  L I+ NTV N++ SI++KT    R+ A  YA  + +
Sbjct: 873 LTFRELEVLRLVAEGLSNRQLSERLFITENTVTNHVRSILQKTGVANRTMAARYAAEHGL 932

Query: 246 V 246
           +
Sbjct: 933 L 933


>gi|307133126|ref|YP_003885142.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya
           dadantii 3937]
 gi|313104103|sp|Q47188|EXPR_DICD3 RecName: Full=Transcriptional activator protein expR
 gi|306530655|gb|ADN00586.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya
           dadantii 3937]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N+
Sbjct: 180 FSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|239930904|ref|ZP_04687857.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439281|ref|ZP_06578671.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342176|gb|EFE69132.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 248

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 185 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 244

Query: 246 V 246
           +
Sbjct: 245 L 245


>gi|167572684|ref|ZP_02365558.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|296505776|ref|YP_003667476.1| two-component response regulator YocG [Bacillus thuringiensis
           BMB171]
 gi|296326828|gb|ADH09756.1| two-component response regulator YocG [Bacillus thuringiensis
           BMB171]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|218231458|ref|YP_002370129.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218159415|gb|ACK59407.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|52140211|ref|YP_086620.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51973680|gb|AAU15230.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|172058475|ref|YP_001814935.1| two component LuxR family transcriptional regulator
           [Exiguobacterium sibiricum 255-15]
 gi|171990996|gb|ACB61918.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sibiricum 255-15]
          Length = 231

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  +++G ++  I+  L IS  TV N+++SI+RK     R+GA+  A+R
Sbjct: 168 LTRRECEVLQLLADGFSNRAISDTLFISEKTVKNHVSSILRKMNVPDRTGAVVEAIR 224


>gi|323127832|gb|ADX25129.1| Two-component response regulator yvqC [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 213

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K++D H     ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     
Sbjct: 135 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 194

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA R+++V
Sbjct: 195 RTQAVVYAFRHHLV 208


>gi|312128700|ref|YP_003993574.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778719|gb|ADQ08205.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 211

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE+E    IS+G ++ EIA +L IS  TV NYI SI++K   K R+    Y
Sbjct: 152 LTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|13473938|ref|NP_105506.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
 gi|14024689|dbj|BAB51292.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 215

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + ++SEG+++  IA  LG+S  TV+++  + MRK   +     + YA+RN +
Sbjct: 153 LTNREREVVRFVSEGESNKRIAARLGVSVKTVDSHRTTAMRKLGLRNAVDLVRYAIRNKL 212


>gi|228968483|ref|ZP_04129471.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791189|gb|EEM38803.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|172039633|ref|YP_001806134.1| LuxR family transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171701087|gb|ACB54068.1| transcriptional Regulator, LuxR family [Cyanothece sp. ATCC 51142]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 40/57 (70%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+GRE++ L  +S G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   + +A++
Sbjct: 12  LSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELVRWALQ 68


>gi|192288754|ref|YP_001989359.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192282503|gb|ACE98883.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 243

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W ++GKT+ EI+VIL I+  TV  ++    RK     R+ A+A A+   +
Sbjct: 181 LTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGL 240

Query: 246 V 246
           +
Sbjct: 241 I 241


>gi|297162410|gb|ADI12122.1| transcriptional regulator, LuxR family protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 166

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  ++EG  + +IA+ L  S  T+ N + ++M +   + RS A+AYA+R  +
Sbjct: 106 LAAREIEVLRLVAEGYDTADIAMKLSYSERTIKNVLHAVMTRLNLRNRSHAVAYALRQGL 165

Query: 246 V 246
           +
Sbjct: 166 I 166


>gi|206970462|ref|ZP_03231415.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735039|gb|EDZ52208.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|120612175|ref|YP_971853.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120590639|gb|ABM34079.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 353

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F LT RE E L W+ +GKT+ +I  ILG S  TV  ++  +  K   +TR+ A   A+
Sbjct: 284 FRLTAREAEVLYWLLKGKTNRDIGDILGSSPATVKKHLERVYVKLGAETRTAAAGIAM 341


>gi|39933398|ref|NP_945674.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39647244|emb|CAE25765.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 243

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L W ++GKT+ EI+VIL I+  TV  ++    RK     R+ A+A A+
Sbjct: 181 LTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKAL 236


>gi|299137698|ref|ZP_07030879.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600339|gb|EFI56496.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 207

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE E L  I++G+++ EIA  L I+  TV  +++S++ K   + R+ A  YA++ 
Sbjct: 142 VELTPREREVLICITQGRSNREIAEQLHIAEKTVRIHVSSVLDKMGARDRTQATIYALQR 201

Query: 244 NIV 246
            +V
Sbjct: 202 GLV 204


>gi|228903831|ref|ZP_04067946.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228855740|gb|EEN00285.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|229076566|ref|ZP_04209526.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|229099785|ref|ZP_04230710.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229105944|ref|ZP_04236568.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229118847|ref|ZP_04248196.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228664648|gb|EEL20141.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228677518|gb|EEL31771.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228683674|gb|EEL37627.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228706599|gb|EEL58812.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|226311283|ref|YP_002771177.1| germination protein [Brevibacillus brevis NBRC 100599]
 gi|226094231|dbj|BAH42673.1| germination protein [Brevibacillus brevis NBRC 100599]
          Length = 76

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I+++M+K   K RS A+   VR
Sbjct: 14  LTNREREVFELLVQDKTTKEIAGQLFISEKTVRNHISNVMQKLGVKGRSQAVVELVR 70


>gi|303240539|ref|ZP_07327055.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302591941|gb|EFL61673.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +F LT RE+E +  IS+GK+  EI  ++ +S  TV N +  ++ +     R     +AV+
Sbjct: 147 EFNLTDREIEIIKHISDGKSYKEIGEVIHLSEGTVRNMVYELLGRFNLNDRIQLAVFAVK 206

Query: 243 NNIV 246
           NNI+
Sbjct: 207 NNII 210


>gi|225867334|ref|YP_002752712.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225790979|gb|ACO31196.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|149907939|ref|ZP_01896607.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
 gi|149808945|gb|EDM68876.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
          Length = 244

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L W  EGK++ + ++IL IS  TV  + ++I +K     RS AIA A+   +
Sbjct: 182 LSKRELEVLNWAKEGKSNWDTSLILAISERTVKFHFSNIFKKLEVVNRSQAIARAIHFGL 241

Query: 246 V 246
           V
Sbjct: 242 V 242


>gi|116073957|ref|ZP_01471219.1| Bacterial regulatory protein, LuxR family [Synechococcus sp.
           RS9916]
 gi|116069262|gb|EAU75014.1| Bacterial regulatory protein, LuxR family [Synechococcus sp.
           RS9916]
          Length = 92

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 39/56 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+GRE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+
Sbjct: 14  LSGRELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAM 69


>gi|30575828|gb|AAP32919.1| CviR [Chromobacterium violaceum]
          Length = 233

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  L+ RE +   W+S GKT+ EIA IL IS  TV  ++A+++RK     R+ AI   +
Sbjct: 163 NMPLSQREYDIFHWMSRGKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGM 221


>gi|42527826|ref|NP_972924.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|41818654|gb|AAS12843.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
          Length = 217

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +F L+ +E+E +  +SEG ++ +IA   G+S  T+ N I+ I  KT    R+   A+A +
Sbjct: 154 EFGLSQKEIEIIRLVSEGLSNKQIAYKQGLSEGTIKNNISVIFDKTFVSDRTQLAAFAFK 213

Query: 243 NNIV 246
           N IV
Sbjct: 214 NGIV 217


>gi|315302505|ref|ZP_07873346.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596]
 gi|313629123|gb|EFR97415.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596]
          Length = 212

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++
Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|45453489|gb|AAS65458.1| quorum sensing transcriptional activator [Burkholderia
           thailandensis]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVNAIAMGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|50956580|gb|AAT90827.1| acylhomoserine lactone dependent transcriptional activator
           [uncultured proteobacterium QS1]
          Length = 223

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L W+ +GK   E+A+I  IS +TV  +I+ I  K        A+  A+R  I
Sbjct: 163 LSAREIEILQWVGKGKAYFEVAIICAISEHTVKFHISKISTKLNVLNAKQAVYEAIRRGI 222

Query: 246 V 246
           +
Sbjct: 223 I 223


>gi|65317330|ref|ZP_00390289.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|319795485|ref|YP_004157125.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597948|gb|ADU39014.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 340

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +LT RE E L W+ +GKT+ +I  ILG S  T   ++  +  K   +TR+ A   A++
Sbjct: 271 LKLTAREAEVLYWVVKGKTNKDIGEILGSSPATAKKHLERVYVKLGVETRTAAAGVAIK 329


>gi|228936636|ref|ZP_04099430.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823071|gb|EEM68909.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|198276810|ref|ZP_03209341.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135]
 gi|198270335|gb|EDY94605.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135]
          Length = 215

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V   K +ELT RE+E +  ++ G TS EIA  L I RNTV  Y   I  K   K+    
Sbjct: 145 NVKKRKPYELTDRELEVIQLLANGYTSKEIANELNIDRNTVETYKDRIKSKLDCKSAIEI 204

Query: 237 IAYAVRNNIV 246
           + +A +N ++
Sbjct: 205 VVFAYKNKLI 214


>gi|118480385|ref|YP_897536.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045516|ref|ZP_03112747.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|118419610|gb|ABK88029.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023723|gb|EDX62399.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|1217954|emb|CAA65307.1| regulatory protein [Erwinia chrysanthemi]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N+
Sbjct: 180 FSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|298245529|ref|ZP_06969335.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553010|gb|EFH86875.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++  Y+  + +   +  G    LT RE+E L  I+ G    EIA  + ++  TV N+I++
Sbjct: 154 MMQLYEQGLVEKEPIGEG----LTSREIEVLLRIARGMVPKEIAQAIAVTEKTVRNHISN 209

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I RK     RS  + YA++  ++
Sbjct: 210 IYRKLNIYDRSQIVIYAIKKGLI 232


>gi|289434290|ref|YP_003464162.1| DNA-binding response regulator, LuxR family [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170534|emb|CBH27074.1| DNA-binding response regulator, LuxR family [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313633930|gb|EFS00643.1| sensory transduction protein LiaR [Listeria seeligeri FSL N1-067]
 gi|313638502|gb|EFS03673.1| sensory transduction protein LiaR [Listeria seeligeri FSL S4-171]
          Length = 212

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++
Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|228949073|ref|ZP_04111345.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810646|gb|EEM56995.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|229112766|ref|ZP_04242298.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229153515|ref|ZP_04281693.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228630119|gb|EEK86770.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228670600|gb|EEL25912.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|229176028|ref|ZP_04303523.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228607460|gb|EEK64787.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|224476907|ref|YP_002634513.1| putative two-component response regulator [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421514|emb|CAL28328.1| putative two-component response regulator [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 209

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  +++GKT+ EIA  L +S  TV  +++ I  K     R+ A  YA+ N 
Sbjct: 148 KLSNRETEVLKEMAKGKTNKEIAEALYVSEKTVKTHVSHIFSKLQVTDRTQAAIYAMENK 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|163734517|ref|ZP_02141956.1| transcription regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
 gi|161392010|gb|EDQ16340.1| transcription regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
          Length = 267

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L WI+ GK++  IA ILGISR+TV+     I  K     R+ A    + + +
Sbjct: 199 LSPREVEILQWIARGKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAIRGLGSGL 258

Query: 246 V 246
           V
Sbjct: 259 V 259


>gi|324329302|gb|ADY24562.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|229591820|ref|YP_002873939.1| putative response regulator [Pseudomonas fluorescens SBW25]
 gi|229363686|emb|CAY51054.1| putative response regulator [Pseudomonas fluorescens SBW25]
          Length = 219

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +A
Sbjct: 150 GHSHNLTARQLEILRLIVRGKSTREIAHGLGLSIKTVEAHRSQIMKRLQIFDVAGLVLFA 209

Query: 241 VRNNIV 246
           VR  I+
Sbjct: 210 VREQII 215


>gi|228955601|ref|ZP_04117601.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229193605|ref|ZP_04320549.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228589910|gb|EEK47785.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228804077|gb|EEM50696.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|124008987|ref|ZP_01693672.1| DNA-binding response regulator, LuxR family, putative [Microscilla
           marina ATCC 23134]
 gi|123985413|gb|EAY25321.1| DNA-binding response regulator, LuxR family, putative [Microscilla
           marina ATCC 23134]
          Length = 222

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E T RE+E L  + E  T+ EIA  L ISR TV  +  ++  KT  +  +G + YA++N 
Sbjct: 153 EFTDREMEVLRLLCEQYTAQEIADKLFISRRTVEGHKDNLFAKTGARNLAGLVIYALQNQ 212

Query: 245 IV 246
           +V
Sbjct: 213 LV 214


>gi|42784527|ref|NP_981774.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42740459|gb|AAS44382.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|30265375|ref|NP_847752.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47778416|ref|YP_022268.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188186|ref|YP_031439.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871303|ref|ZP_02215952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635735|ref|ZP_02394045.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170688151|ref|ZP_02879362.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708082|ref|ZP_02898530.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651949|ref|ZP_02934532.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190569108|ref|ZP_03022007.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227818115|ref|YP_002818124.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603443|ref|YP_002869565.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687206|ref|ZP_05151064.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724707|ref|ZP_05186490.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254742263|ref|ZP_05199950.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755822|ref|ZP_05207854.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762162|ref|ZP_05214008.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30260053|gb|AAP29238.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47552121|gb|AAT34743.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182113|gb|AAT57489.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712970|gb|EDR18498.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167528844|gb|EDR91601.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127055|gb|EDS95934.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667844|gb|EDT18596.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082653|gb|EDT67717.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190559776|gb|EDV13762.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227003949|gb|ACP13692.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229267851|gb|ACQ49488.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|328949883|ref|YP_004367218.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450207|gb|AEB11108.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 208

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++ +LT RE+E +  I+EGKT  EIA  LGIS  TV  Y      K   KTR+  + +A+
Sbjct: 143 REAKLTERELEVVRQIAEGKTYKEIAEHLGISEKTVATYRERAAEKLGLKTRAELVRWAL 202

Query: 242 RNNIV 246
              ++
Sbjct: 203 ERGLL 207


>gi|319892883|ref|YP_004149758.1| Two-component response regulator-like protein [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162579|gb|ADV06122.1| Two-component response regulator-like protein [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 208

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  +++GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N+
Sbjct: 147 KLSKRETEVLKEMAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENH 206

Query: 245 IV 246
           ++
Sbjct: 207 LI 208


>gi|228911192|ref|ZP_04074997.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228848368|gb|EEM93217.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|170697389|ref|ZP_02888481.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137720|gb|EDT05956.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 228

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L W ++GKT+ EIA IL IS  T+  ++ +IM K  +  ++ AI  AV   I
Sbjct: 167 FTTREKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGI 226

Query: 246 V 246
           +
Sbjct: 227 I 227


>gi|116872424|ref|YP_849205.1| LuxR family DNA-binding response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741302|emb|CAK20424.1| DNA-binding response regulator; LuxR family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 212

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++
Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|83588897|ref|YP_428906.1| two component LuxR family transcriptional regulator [Moorella
           thermoacetica ATCC 39073]
 gi|83571811|gb|ABC18363.1| two component transcriptional regulator, LuxR family [Moorella
           thermoacetica ATCC 39073]
          Length = 221

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L   +EG T+ EIA  L IS  TV  + A+IM+K     R   + YA++N 
Sbjct: 155 ELTERELEVLRLAAEGLTNAEIARRLVISVKTVQAHRANIMQKLGLHDRVDLVKYAIKNG 214

Query: 245 IV 246
           I+
Sbjct: 215 IL 216


>gi|86142564|ref|ZP_01061003.1| hypothetical protein MED217_06611 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830596|gb|EAQ49054.1| hypothetical protein MED217_06611 [Leeuwenhoekiella blandensis
           MED217]
          Length = 243

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           FK Y  H  ++F  + R+ E +  I+EG  S EIA +L ISR+TV+ +  +I++K   K 
Sbjct: 171 FKRYVGHQYENF-FSARQFEVIKGITEGLNSKEIADLLFISRHTVDTHRKNILKKARCKN 229

Query: 233 RSGAIAYAVRNNIV 246
               I++  +N ++
Sbjct: 230 SVELISFCKKNGLI 243


>gi|229072819|ref|ZP_04206018.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228710310|gb|EEL62285.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|219849441|ref|YP_002463874.1| LuxR family transcriptional regulator [Chloroflexus aggregans DSM
           9485]
 gi|219543700|gb|ACL25438.1| transcriptional regulator, LuxR family [Chloroflexus aggregans DSM
           9485]
          Length = 508

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ RE E L  ++ G T+ +IAV L IS NTV  ++ +I  K   ++R+ A  YA+R  I
Sbjct: 7   ISEREREILRLVATGATNQQIAVALNISVNTVKVHLRNIFAKIGVESRTEATVYAIRTGI 66

Query: 246 V 246
           V
Sbjct: 67  V 67


>gi|302529657|ref|ZP_07281999.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302438552|gb|EFL10368.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 276

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE++ L  +SEG T+DEI+  LG+  NTV +Y+   MRK A   R  A+
Sbjct: 213 LTPREIDVLRLVSEGCTNDEISDRLGLLPNTVKSYLKHAMRKLAVSNRVQAV 264


>gi|297623791|ref|YP_003705225.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164971|gb|ADI14682.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 503

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 11/130 (8%)

Query: 117 PENIT--PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQA 170
            E IT    AG +     L +D+   + G   LF   + ++ D  W     +  LA  +A
Sbjct: 371 AETITLGGDAGDERGLLKLFYDITERKRGEEALFRALQEVMSDTAWFSTQVMERLAQIRA 430

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              K+          LT RE + L  +++GK+++ IA  LG++R TV NYI+ +  K   
Sbjct: 431 GRPKA-----APSVALTERERQVLAQLAQGKSNEAIAAELGLARQTVRNYISVLYDKIGV 485

Query: 231 KTRSGAIAYA 240
            +R+ A+ +A
Sbjct: 486 HSRAEAVVWA 495


>gi|257876663|ref|ZP_05656316.1| regulatory protein [Enterococcus casseliflavus EC20]
 gi|325571030|ref|ZP_08146602.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257810829|gb|EEV39649.1| regulatory protein [Enterococcus casseliflavus EC20]
 gi|325156115|gb|EGC68301.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 209

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ 
Sbjct: 147 DLTNREQEVLLLIAEGKSNQEIADSLFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHG 206

Query: 245 IV 246
           ++
Sbjct: 207 LI 208


>gi|229051023|ref|ZP_04194571.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229147892|ref|ZP_04276233.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228635542|gb|EEK92031.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228722332|gb|EEL73729.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|206975821|ref|ZP_03236732.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962842|ref|YP_002341420.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|206745915|gb|EDZ57311.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217067023|gb|ACJ81273.1| DNA-binding response regulator [Bacillus cereus AH187]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|16803062|ref|NP_464547.1| hypothetical protein lmo1022 [Listeria monocytogenes EGD-e]
 gi|46907254|ref|YP_013643.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47096354|ref|ZP_00233950.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217964878|ref|YP_002350556.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|224500732|ref|ZP_03669081.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes Finland 1988]
 gi|224502663|ref|ZP_03670970.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes FSL R2-561]
 gi|226223640|ref|YP_002757747.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254823705|ref|ZP_05228706.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254832231|ref|ZP_05236886.1| two-component response regulator [Listeria monocytogenes 10403S]
 gi|254852518|ref|ZP_05241866.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254898804|ref|ZP_05258728.1| two-component response regulator [Listeria monocytogenes J0161]
 gi|254911707|ref|ZP_05261719.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254931406|ref|ZP_05264765.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|254936033|ref|ZP_05267730.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|255520598|ref|ZP_05387835.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
 gi|290893828|ref|ZP_06556807.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|300764232|ref|ZP_07074227.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|315281752|ref|ZP_07870312.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120]
 gi|16410424|emb|CAC99100.1| lmo1022 [Listeria monocytogenes EGD-e]
 gi|46880521|gb|AAT03820.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47015312|gb|EAL06249.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217334148|gb|ACK39942.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|225876102|emb|CAS04808.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605826|gb|EEW18434.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|258608621|gb|EEW21229.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|290556655|gb|EFD90190.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|293582956|gb|EFF94988.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293589656|gb|EFF97990.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|293592927|gb|EFG00688.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300515222|gb|EFK42274.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|307570563|emb|CAR83742.1| DNA-binding response regulator, LuxR family [Listeria monocytogenes
           L99]
 gi|313614594|gb|EFR88178.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120]
 gi|328466914|gb|EGF38023.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328475371|gb|EGF46144.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332311431|gb|EGJ24526.1| Transcriptional regulatory protein [Listeria monocytogenes str.
           Scott A]
          Length = 212

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++
Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|325277292|ref|ZP_08142919.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|324097558|gb|EGB95777.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 219

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 179 HWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             G D   LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G +
Sbjct: 147 QGGSDRHNLTARQLEILRLIVRGKSTREIATGLGLSIKTVETHRSQIMKRLQIHDVAGLV 206

Query: 238 AYAVRNNIV 246
            +AVR  I+
Sbjct: 207 LFAVREKII 215


>gi|253997167|ref|YP_003049231.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983846|gb|ACT48704.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8]
          Length = 263

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE+  + W+  GKT+ EI +IL IS  TV N++  I++K     R+ A+ 
Sbjct: 202 LSEREISIMEWVKAGKTNQEIGIILDISSFTVKNHMQRILKKLDVLNRAQAVT 254


>gi|228961616|ref|ZP_04123225.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798098|gb|EEM45102.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|218460663|ref|ZP_03500754.1| two component transcriptional regulator, LuxR family protein
           [Rhizobium etli Kim 5]
          Length = 61

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           T RE E L WIS+GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 1   TQRESEVLLWISKGKATRDIGEILGLSARTVNTHLEQIYVKLGVENRASAAVKA 54


>gi|170750849|ref|YP_001757109.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170752017|ref|YP_001758277.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657371|gb|ACB26426.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658539|gb|ACB27594.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 486

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  I  G + D IA  LG+SRNTV N+ A++ RK     RS A+ +   N 
Sbjct: 420 LTVRERQILNLICSGLSDDAIARKLGLSRNTVRNHGAALYRKIGIHKRSEAVVWGRENG 478


>gi|37223214|gb|AAQ90204.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+ +YQ    K    H   D  LT RE ECL W SEGK++ +I+ ILG S  TV  ++ 
Sbjct: 166 SLVDSYQ----KINTTHKKSDSILTKRETECLAWASEGKSTWDISKILGCSERTVTFHLT 221

Query: 223 SIMRKTATKTR 233
           +   K  T  R
Sbjct: 222 NTQMKLNTTNR 232


>gi|150019634|ref|YP_001311888.1| two component LuxR family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906099|gb|ABR36932.1| two component transcriptional regulator, LuxR family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 218

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G +  LT RE++ ++ I +GK + EIA  L I+  TV N I  I+ K + + R+    YA
Sbjct: 153 GINISLTERELKIVSMIVDGKDNKEIASSLFIAEGTVKNIITEIISKLSLRDRTQLAVYA 212

Query: 241 VRNNIV 246
           V+N +V
Sbjct: 213 VKNGLV 218


>gi|304397142|ref|ZP_07379021.1| transcriptional regulator, LuxR family [Pantoea sp. aB]
 gi|304355291|gb|EFM19659.1| transcriptional regulator, LuxR family [Pantoea sp. aB]
          Length = 240

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E + RE+E L W  EGKT+ EI++IL IS +TVN +  ++ ++     ++    YA    
Sbjct: 179 EFSQRELEILKWTGEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIG 238

Query: 245 IV 246
           ++
Sbjct: 239 LI 240


>gi|271498689|ref|YP_003331714.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342244|gb|ACZ75009.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N+
Sbjct: 180 FSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|167640433|ref|ZP_02398697.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|254735503|ref|ZP_05193211.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|167511653|gb|EDR87035.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|328882798|emb|CCA56037.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 187 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246

Query: 246 V 246
           +
Sbjct: 247 L 247


>gi|313624283|gb|EFR94330.1| sensory transduction protein LiaR [Listeria innocua FSL J1-023]
          Length = 212

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++
Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|317050571|ref|YP_004111687.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316945655|gb|ADU65131.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 224

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G T  E+A  LGIS  T+  + A+IM    TK RS  + YA+ + +
Sbjct: 155 LSKRETEVLQLIALGYTQQEVADQLGISIKTIETHKANIMESLGTKKRSELVRYALAHGL 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|253575534|ref|ZP_04852871.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845181|gb|EES73192.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT RE E L   ++G T+ EIA  L +S  TV NYI+ I+ K   K+R  A+  A 
Sbjct: 136 RDNPLTAREQEILRLAAKGCTASEIAASLHLSYGTVRNYISEILNKLEVKSRIEAVRLAE 195

Query: 242 RNN 244
            N 
Sbjct: 196 ENG 198


>gi|228995222|ref|ZP_04154940.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
 gi|228764519|gb|EEM13350.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
          Length = 570

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK+F LT RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A
Sbjct: 504 GKEFGLTKRELEVLNLLSQGSRYKTIASKLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 563


>gi|229033988|ref|ZP_04188939.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228728327|gb|EEL79352.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|224552909|gb|ACN54692.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 141 HQKKNAFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|218247226|ref|YP_002372597.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257061439|ref|YP_003139327.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167704|gb|ACK66441.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256591605|gb|ACV02492.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 223

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  ++ G ++ EI   L +S  TV  Y++S++RKT T  R+  + +A+ +
Sbjct: 160 LHLTSRESQVLNLLARGLSNGEIGQNLHLSSRTVEKYVSSLLRKTETNNRAELVRFALDH 219

Query: 244 NIV 246
           +++
Sbjct: 220 HLI 222


>gi|139473330|ref|YP_001128045.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|134271576|emb|CAM29801.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
          Length = 213

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K++D H     ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     
Sbjct: 135 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 194

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA R+++V
Sbjct: 195 RTQAVVYAFRHHLV 208


>gi|37223239|gb|AAQ90220.1| LuxR [Aliivibrio fischeri]
 gi|37223242|gb|AAQ90222.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L++   N  K    H   D  LT RE ECL W SEGK++ +I+ ILG S  TV  ++ +
Sbjct: 163 MLSSLVDNYQKINTTHKKSDSILTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTN 222

Query: 224 IMRKTATKTR 233
              K  T  R
Sbjct: 223 TQMKLNTTNR 232


>gi|158313806|ref|YP_001506314.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158109211|gb|ABW11408.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 216

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L  I+EG T+ +IA  L +S  TV NY++SI+ K    +R+ A  YA R +
Sbjct: 157 LSTREREILVLIAEGLTNRQIAGRLHLSEKTVKNYVSSILDKLGLSSRTQAAVYAARRH 215


>gi|330821614|ref|YP_004350476.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373609|gb|AEA64964.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 509

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGIS 213
           ++D  W   +L    AN+ ++     G    +LTGRE E    +  G    EIA+ L +S
Sbjct: 400 MQDASWFSRMLIEKLANVRRTNSPDAGAQLSDLTGREREVFDLLCRGLADKEIAIKLNLS 459

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
            NTV N++A+I  K    +R+ AI +A
Sbjct: 460 PNTVRNHVATIYGKLDVHSRTEAIVWA 486


>gi|228924099|ref|ZP_04087375.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835589|gb|EEM80954.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|228988578|ref|ZP_04148665.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771195|gb|EEM19674.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|229082566|ref|ZP_04215029.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228700998|gb|EEL53521.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|229187578|ref|ZP_04314718.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228595945|gb|EEK53625.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 227

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ ++   L +S  TV  Y++S++RKTAT  R+  + +A+++ +
Sbjct: 166 LTPREQEVLELLTHGFSNADMGHQLHLSPRTVEKYVSSLLRKTATSNRAELVRFAMKHGL 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|90021218|ref|YP_527045.1| XRE family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89950818|gb|ABD80833.1| transcriptional regulator, XRE family [Saccharophagus degradans
           2-40]
          Length = 227

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 42/64 (65%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT R++  L  + +G ++ EIA  L +S +TV  ++A+I+R+   K R+ A+A+A +
Sbjct: 162 DHQLTERQLHVLHEMLKGLSNKEIARELNMSPSTVKVHVAAILREFNVKNRTQAVAHARQ 221

Query: 243 NNIV 246
            NI+
Sbjct: 222 KNII 225


>gi|34452032|gb|AAQ72483.1| DNA binding response regulator [Bacillus cereus]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|2495419|sp|Q46967|ECHR_ERWCH RecName: Full=Transcriptional activator protein echR
 gi|1177878|gb|AAA86840.1| EchR [Erwinia chrysanthemi]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N+
Sbjct: 180 FSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|228917960|ref|ZP_04081496.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841757|gb|EEM86868.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|205374169|ref|ZP_03226968.1| hypothetical protein Bcoam_13554 [Bacillus coahuilensis m4-4]
          Length = 199

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE+E L  +++GK ++EIA  L I   TV NYI++I+ K   K R  AI
Sbjct: 138 LTEREIEVLGLVADGKNTNEIANELSIKAGTVRNYISAILDKLEVKNRIEAI 189


>gi|171913297|ref|ZP_02928767.1| two-component system regulatory protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  I+ G+++  IA  +GI+ +TV  ++  I+ K     R+ A A A+R  I
Sbjct: 145 VTPREREVLELIASGQSNKRIAAAIGITEDTVKRHVTHILEKLGVNDRAQATAEAIRRGI 204

Query: 246 V 246
           +
Sbjct: 205 I 205


>gi|152985537|ref|YP_001348746.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960695|gb|ABR82720.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAV 241
           LT RE E L W + GKT  EI +IL I + TV  +I + MRK  ++ K  +   AYA+
Sbjct: 176 LTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAI 233


>gi|110681100|ref|YP_684107.1| LuxR family transcription regulator [Roseobacter denitrificans OCh
           114]
 gi|109457216|gb|ABG33421.1| transcription regulator, LuxR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 248

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L WI+ GK++  IA ILGISR+TV+     I  K     R+ A    + + +
Sbjct: 180 LSPREVEILQWIARGKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAIRGLGSGL 239

Query: 246 V 246
           V
Sbjct: 240 V 240


>gi|15597095|ref|NP_250589.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAO1]
 gi|116049852|ref|YP_791341.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892145|ref|YP_002441012.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58]
 gi|254234991|ref|ZP_04928314.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719]
 gi|254240292|ref|ZP_04933614.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192]
 gi|6014709|gb|AAF01471.1|AF190630_1 PhzR [Pseudomonas aeruginosa PAO1]
 gi|9947891|gb|AAG05287.1|AE004616_1 quorum-sensing control repressor [Pseudomonas aeruginosa PAO1]
 gi|115585073|gb|ABJ11088.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166922|gb|EAZ52433.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719]
 gi|126193670|gb|EAZ57733.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192]
 gi|218772371|emb|CAW28153.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAV 241
           LT RE E L W + GKT  EI +IL I + TV  +I + MRK  ++ K  +   AYA+
Sbjct: 176 LTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAI 233


>gi|317047630|ref|YP_004115278.1| LuxR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949247|gb|ADU68722.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 240

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + + RE+E L W +EGKTS EI++IL IS +TVN +  ++ ++     ++    YA 
Sbjct: 179 DFSQRELEILKWTAEGKTSAEISLILAISEHTVNFHQKNMQKRFNVSNKTQIACYAA 235


>gi|160900754|ref|YP_001566336.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160366338|gb|ABX37951.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 220

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    LT RE   L WISEG+++ EIA ++G S  TV  +   + RK      +  I YA
Sbjct: 144 GPRRALTPREASVLQWISEGRSNKEIAALMGTSVRTVETHRLHLRRKLRIDGHAAFIKYA 203

Query: 241 V 241
           V
Sbjct: 204 V 204


>gi|103488066|ref|YP_617627.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98978143|gb|ABF54294.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis
           RB2256]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 14/136 (10%)

Query: 114 HTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
           H L +  T P    G     CS          GL    P   +I+ + L  + + +A Q 
Sbjct: 114 HGLADGFTVPRHLPGDVTGSCSFV-------TGLGKSIPHAMLIVAEMLGAMAIASARQL 166

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           + + S  V       LT R+ +C+ W + GKT  EI+ IL IS  TV  ++     +  T
Sbjct: 167 SGWTSRSVQ----PRLTDRQRDCVLWAARGKTDWEISRILDISHETVIQHLKDARERYET 222

Query: 231 KTRSGAIAYAVRNNIV 246
             R+  I YA+ + ++
Sbjct: 223 HKRASLILYALYDGLI 238


>gi|301059676|ref|ZP_07200584.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
 gi|300446242|gb|EFK10099.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
          Length = 219

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG  + EIA  L IS  TV  + A+IMRKT   + S   AYA+   +
Sbjct: 157 LTQREREVLKLVAEGYQNKEIAEYLFISPKTVEKHRANIMRKTDLHSASSLTAYAIEKGL 216

Query: 246 V 246
           +
Sbjct: 217 L 217


>gi|229199478|ref|ZP_04326139.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228583883|gb|EEK42040.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|16800090|ref|NP_470358.1| hypothetical protein lin1021 [Listeria innocua Clip11262]
 gi|16413480|emb|CAC96252.1| lin1021 [Listeria innocua Clip11262]
 gi|313609539|gb|EFR85084.1| sensory transduction protein LiaR [Listeria monocytogenes FSL
           F2-208]
 gi|313619559|gb|EFR91226.1| sensory transduction protein LiaR [Listeria innocua FSL S4-378]
          Length = 212

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++
Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|291301112|ref|YP_003512390.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570332|gb|ADD43297.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 215

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 34/48 (70%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L  +++G+T++EIA  L I+++TV  ++AS+MRK   + R
Sbjct: 155 LTAREEEVLVSVAQGRTNNEIASELYITQSTVKAHLASLMRKLGARNR 202


>gi|307331341|ref|ZP_07610462.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883019|gb|EFN14084.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 249

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 186 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 245

Query: 246 V 246
           +
Sbjct: 246 L 246


>gi|229164302|ref|ZP_04292233.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619145|gb|EEK76040.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|37528381|ref|NP_931726.1| hypothetical protein plu4562 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787819|emb|CAE16934.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 29/42 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ REVE + W  EGKTS EIA IL IS  TVN +I ++M K
Sbjct: 177 LSTREVEVIRWTCEGKTSAEIADILDISTRTVNFHINNVMEK 218


>gi|159897239|ref|YP_001543486.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890278|gb|ABX03358.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 240

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+ +A++
Sbjct: 165 LTSREIEILDCIARGLSNKEIANQLSISGQTVKNHITSILSKLQVNDRTMAVIHAIQ 221


>gi|120404945|ref|YP_954774.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957763|gb|ABM14768.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
          Length = 301

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G+   LT RE+E L +++EG T+  IA  L IS  TV  ++  I+RK     R+ A+++
Sbjct: 232 GRAHSLTRRELEVLEFVAEGATNARIARALTISEGTVKGHMKHILRKLGAANRAEAVSH 290


>gi|295697536|ref|YP_003590774.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295413138|gb|ADG07630.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 278

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++EG+++ +IA  L +S  TV N++ASI+ K   + R+ A+  A+R  
Sbjct: 215 LTKREFEVLQLLAEGRSNRDIAKALVLSEKTVKNHVASILDKLVVRDRTQAVLVALRRG 273


>gi|258650899|ref|YP_003200055.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554124|gb|ACV77066.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 241

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    LTGRE E L  ++ G+++ EIA  L +S  TV +++ +++ K   + R  A+ YA
Sbjct: 159 GPGGSLTGREHEVLLLLARGRSNAEIATDLVVSEVTVKSHVGAVLHKLDLRNRVAAVIYA 218

Query: 241 VRNNIV 246
             + ++
Sbjct: 219 YEHGLI 224


>gi|239817207|ref|YP_002946117.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803784|gb|ACS20851.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 356

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +LT RE E L W+ +GKT+ +I  ILG S  T   ++  +  K   +TR+ A   A++
Sbjct: 287 LKLTAREAEVLYWVVKGKTNKDIGEILGSSPATAKKHLERVYVKLGVETRTAAAGVAIK 345


>gi|223937694|ref|ZP_03629596.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893666|gb|EEF60125.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L  RE E L W+++GK++ +IA ILGIS  TV  ++  I  K   ++R+ A   A+
Sbjct: 145 LAPREAEVLLWVTQGKSNGDIASILGISEWTVKKHLLHIFEKLGVESRNAATLRAL 200


>gi|157467980|gb|ABV57378.1| ExpR [Erwinia chrysanthemi]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N+
Sbjct: 180 FSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|154494182|ref|ZP_02033502.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC
           43184]
 gi|154086044|gb|EDN85089.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC
           43184]
          Length = 192

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE + L  I +G T+ EIA  L IS NTV ++  +I  K   KT SG   YA+ N 
Sbjct: 124 ELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTVSGLTFYAIMNG 183

Query: 245 IV 246
           I+
Sbjct: 184 II 185


>gi|83859373|ref|ZP_00952894.1| Transcriptional regulatory protein, LuxR family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83852820|gb|EAP90673.1| Transcriptional regulatory protein, LuxR family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 241

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 158 RLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           R+ ++G    Y    M + YD        L+ REVE L W++ GK++  IA ILG+S +T
Sbjct: 152 RMLQLGCQELYSRTIMLRDYDAPAPP--HLSEREVEILQWLARGKSNAVIAAILGVSPHT 209

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V+  +     K     R  A+  A+R  ++
Sbjct: 210 VDTIMRRAFVKLNASNRIAAVLKALRVGLI 239


>gi|304394107|ref|ZP_07376030.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130]
 gi|303293547|gb|EFL87924.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130]
          Length = 240

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+GRE++CL+  + GKTS E A  L +S +TV +Y+A   +K     R  A+A A+R
Sbjct: 179 LSGREMDCLSHAALGKTSKETARDLELSDHTVTHYLALACKKLEAVNRVHAVAKALR 235


>gi|34497990|ref|NP_902205.1| nitrate/nitrite response regulator protein narL [Chromobacterium
           violaceum ATCC 12472]
 gi|34103845|gb|AAQ60206.1| nitrate/nitrite response regulator protein narL [Chromobacterium
           violaceum ATCC 12472]
          Length = 215

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W++ G ++ EIA  L ++ +TV  ++ +I+RK +  +R  A  YAV + +
Sbjct: 153 LTPRERETLGWLARGASNKEIARALDLAESTVKVHVQNILRKLSLSSRVQAAVYAVEHGL 212


>gi|28895408|ref|NP_801758.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50914724|ref|YP_060696.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10394]
 gi|71904035|ref|YP_280838.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|94988957|ref|YP_597058.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94990957|ref|YP_599057.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10270]
 gi|94992850|ref|YP_600949.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS2096]
 gi|94994837|ref|YP_602935.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10750]
 gi|28810654|dbj|BAC63591.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50903798|gb|AAT87513.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10394]
 gi|71803130|gb|AAX72483.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|94542465|gb|ABF32514.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94544465|gb|ABF34513.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10270]
 gi|94546358|gb|ABF36405.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS2096]
 gi|94548345|gb|ABF38391.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10750]
          Length = 215

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K++D H     ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     
Sbjct: 137 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 196

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA R+++V
Sbjct: 197 RTQAVVYAFRHHLV 210


>gi|117925383|ref|YP_866000.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117609139|gb|ABK44594.1| two component transcriptional regulator, LuxR family [Magnetococcus
           sp. MC-1]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +L+ RE E +  +++G+T+ EIA  LGIS  TV+ +   +MRK    T +  + YA+R 
Sbjct: 144 VQLSPREKEVVRLVADGQTNKEIARSLGISPKTVDTHRTRLMRKLNLHTTADVVRYAMRM 203

Query: 244 NIV 246
            +V
Sbjct: 204 GLV 206


>gi|297159907|gb|ADI09619.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 252

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 189 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 248

Query: 246 V 246
           +
Sbjct: 249 L 249


>gi|258651303|ref|YP_003200459.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258554528|gb|ACV77470.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 933

 Score = 45.8 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  I+ G+T+ +IA    +S  TV ++  SI RK   + R+ A+A A R  
Sbjct: 867 ELTARELEILAAIASGRTNAQIATDFFLSTKTVMHHSVSIYRKLEVRGRAEAVALAYRTG 926

Query: 245 IV 246
           ++
Sbjct: 927 LL 928


>gi|29831611|ref|NP_826245.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608727|dbj|BAC72780.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 248

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 185 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 244

Query: 246 V 246
           +
Sbjct: 245 L 245


>gi|89902166|ref|YP_524637.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89346903|gb|ABD71106.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 328

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F+LT RE E L W+ +GK + +I  ILG S  TV  ++  +  K   +TR+ A   A+
Sbjct: 259 FKLTPREAEVLYWVVKGKINRDIGDILGSSPMTVKKHLEHVFAKLGVETRTAAAGMAM 316


>gi|297194044|ref|ZP_06911442.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152083|gb|EFH31522.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 190 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 249

Query: 246 V 246
           +
Sbjct: 250 L 250


>gi|291441518|ref|ZP_06580908.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291344413|gb|EFE71369.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G    LT RE+  L+  +EG    EIA  L +SR TV NY+A+ +RK   + R  AI
Sbjct: 135 GARMPLTTRELSVLSLAAEGAPVAEIAARLHLSRGTVRNYMATAIRKVGARNRVDAI 191


>gi|255642661|gb|ACU21562.1| AhyR/asaR [Aeromonas hydrophila]
          Length = 88

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E   W +EGK   +IA ILGI+  TV  ++ +++ K    ++S AI++A++  +
Sbjct: 12  LSLRELEVCRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGM 71

Query: 246 V 246
           V
Sbjct: 72  V 72


>gi|229065002|ref|ZP_04200300.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716303|gb|EEL68015.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|171315924|ref|ZP_02905153.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098927|gb|EDT43717.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 228

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L W ++GKT+ EIA IL IS  T+  ++ +IM K  +  ++ AI  AV   I
Sbjct: 167 FTTREKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGI 226

Query: 246 V 246
           +
Sbjct: 227 I 227


>gi|16265270|ref|NP_438062.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|15141410|emb|CAC49922.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F LT RE E L WI++GK++ +I  ILG+S  TV  ++  I  K   + R+ A   A 
Sbjct: 244 QHFRLTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKAT 303

Query: 242 R 242
           +
Sbjct: 304 Q 304


>gi|115360781|ref|YP_777918.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|172065092|ref|YP_001815804.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115286109|gb|ABI91584.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
 gi|171997334|gb|ACB68251.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 228

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L W ++GKT+ EIA IL IS  T+  ++ +IM K  +  ++ AI  AV   I
Sbjct: 167 FTTREKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGI 226

Query: 246 V 246
           +
Sbjct: 227 I 227


>gi|19746547|ref|NP_607683.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21910902|ref|NP_665170.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|56808638|ref|ZP_00366364.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Streptococcus pyogenes
           M49 591]
 gi|209559762|ref|YP_002286234.1| Putative two-component response regulator [Streptococcus pyogenes
           NZ131]
 gi|306826950|ref|ZP_07460250.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
 gi|19748758|gb|AAL98182.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS8232]
 gi|21905108|gb|AAM79973.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|209540963|gb|ACI61539.1| Putative two-component response regulator [Streptococcus pyogenes
           NZ131]
 gi|304430968|gb|EFM33977.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K++D H     ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     
Sbjct: 135 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 194

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA R+++V
Sbjct: 195 RTQAVVYAFRHHLV 208


>gi|225021584|ref|ZP_03710776.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681229|ref|ZP_07404036.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|224945575|gb|EEG26784.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659434|gb|EFM48934.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 215

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++C+  + +G +++EIA  L +  +TV  +++S M KT T  R   + +A RN +
Sbjct: 154 LTPRELDCVAQLCQGMSNNEIATTLFLEPSTVKTHLSSAMAKTGTHNRVQLVIWAFRNGV 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|78062461|ref|YP_372369.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77970346|gb|ABB11725.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 215

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG ++  IA  LGI+  TV  ++ ++M K     R+ A+A A R  +
Sbjct: 151 LTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAVALAWREGL 210

Query: 246 V 246
           +
Sbjct: 211 M 211


>gi|313110609|ref|ZP_07796491.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882993|gb|EFQ41587.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 226

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAV 241
           LT RE E L W + GKT  EI +IL I + TV  +I + MRK  ++ K  +   AYA+
Sbjct: 165 LTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAI 222


>gi|300691151|ref|YP_003752146.1| transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
 gi|299078211|emb|CBJ50858.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT    R G    A
Sbjct: 183 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVGVAVLA 237


>gi|47569776|ref|ZP_00240448.1| two-component response regulator yocG [Bacillus cereus G9241]
 gi|47553572|gb|EAL11951.1| two-component response regulator yocG [Bacillus cereus G9241]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|297155312|gb|ADI05024.1| response regulator [Streptomyces bingchenggensis BCW-1]
          Length = 164

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           IG L +    +        G    LT RE + L  ++EG  + EIAV L  S  TV N I
Sbjct: 79  IGQLVSQVGALRPGAVGRLGVPLGLTPRETDVLRLVAEGMGTGEIAVKLAYSERTVKNVI 138

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             +  +   + R+ A+AYA+R   +
Sbjct: 139 QGLTTRLGLRNRAHAVAYALREGYI 163


>gi|170738931|ref|YP_001767586.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168193205|gb|ACA15152.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 301

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTW 196
           + L  P GR +   R+ ++G        +     +  G + E       LT RE E L W
Sbjct: 194 VALATPDGRRLQLSRIGQVG-----GDEILLRLALDGGGEIERLRRALGLTQREAEVLLW 248

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +S GK S +I  IL +S  TV  ++  +  K   + R+ A A  VR
Sbjct: 249 VSRGKASRDIGEILSLSPRTVTKHLEQVYAKLGVENRTSASALVVR 294


>gi|27376447|ref|NP_767976.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27349587|dbj|BAC46601.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 225

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G +  EIA  LG+SR TV  +I +I RK    TRS A+  AV+  +
Sbjct: 163 LTPREIDILWGIAKGFSYAEIASHLGLSRQTVPGHIKNIYRKLEVHTRSEAVFEAVQQGL 222

Query: 246 V 246
           +
Sbjct: 223 I 223


>gi|21224488|ref|NP_630267.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|4007711|emb|CAA22396.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 260

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  ++EG +S EIA IL IS  TV  + A++++K   + R     YA+R
Sbjct: 195 DHILTPREEEVLKLVAEGHSSKEIAEILFISIKTVQRHRANLLQKLGLRDRLELTRYAIR 254

Query: 243 NNIV 246
             ++
Sbjct: 255 AGLI 258


>gi|297528821|ref|YP_003670096.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252073|gb|ADI25519.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 391

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +++G ++ E A  L +S  TV +YI+S +RK   K R+ A+A A+R  +
Sbjct: 330 LSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKALRLGL 389

Query: 246 V 246
           +
Sbjct: 390 I 390


>gi|284041551|ref|YP_003391891.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945772|gb|ADB48516.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 243

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 42/70 (60%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+   +   L+  E+  L  ++EG +++E A +L +S +TV  ++ ++MRK    +R+ A
Sbjct: 172 DLRERRSSALSSAELRVLALVAEGSSTEEAAELLSLSPHTVRTHLRNVMRKLEASSRAHA 231

Query: 237 IAYAVRNNIV 246
           +A A+R + +
Sbjct: 232 VAIAIRESAI 241


>gi|229155851|ref|ZP_04283952.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627458|gb|EEK84184.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 211

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|326441393|ref|ZP_08216127.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 187 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246

Query: 246 V 246
           +
Sbjct: 247 L 247


>gi|218263259|ref|ZP_03477435.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222833|gb|EEC95483.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii
           DSM 18315]
          Length = 192

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE + L  I +G T+ EIA  L IS NTV ++  +I  K   KT SG   YA+ N 
Sbjct: 124 ELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTVSGLTFYAIMNG 183

Query: 245 IV 246
           I+
Sbjct: 184 II 185


>gi|319943177|ref|ZP_08017460.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
 gi|319743719|gb|EFV96123.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
          Length = 236

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 37/56 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE+E L W ++GK++ +IA IL +S+NTV+ +I + + K     ++ A+  AV
Sbjct: 175 LTERELEVLRWTADGKSAQDIAEILLLSKNTVDFHIRNSINKLDVPNKTAAVVRAV 230


>gi|259048250|ref|ZP_05738651.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035099|gb|EEW36354.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 216

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVI 209
           G++++ D +    LL        +S+D   WG    LT REVE +  +++G ++ EIA  
Sbjct: 124 GKVVM-DTVISEALLTNTSVEKEESFDAEKWG----LTTREVELIAQVAKGLSNKEIAQT 178

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L +S  TV N I++I+ K   + R+  + +A  N +
Sbjct: 179 LFLSEGTVKNNISTILSKLELRDRTQLVIFAYENKL 214


>gi|222098824|ref|YP_002532882.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229142095|ref|ZP_04270620.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|221242883|gb|ACM15593.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228641384|gb|EEK97690.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|254411603|ref|ZP_05025379.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181325|gb|EDX76313.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 225

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+ RE+E L  I EG ++ EIA  L +S NTV  ++  IM K +   R  A   A
Sbjct: 160 GNVSNLSQRELEVLKLIVEGNSNPEIAAKLYLSANTVKTHVRGIMNKLSVDDRVQAAVVA 219

Query: 241 VRNNIV 246
           +R+ IV
Sbjct: 220 LRSGIV 225


>gi|116625514|ref|YP_827670.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228676|gb|ABJ87385.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 191

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++EGKT+ EIAV+L +S  TV+ +   IM K    + +  + +AVRN +
Sbjct: 130 LSSREREVLQMLAEGKTNKEIAVVLNLSVYTVDAHRGRIMEKLNLHSINELVRFAVRNGL 189

Query: 246 V 246
           V
Sbjct: 190 V 190


>gi|296132074|ref|YP_003639321.1| transcriptional regulator, LuxR family [Thermincola sp. JR]
 gi|296030652|gb|ADG81420.1| transcriptional regulator, LuxR family [Thermincola potens JR]
          Length = 232

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S  V   K+  LT RE E L  +++G T+ +IA  L IS NTV N++ +I+ K     R+
Sbjct: 141 SLQVKPEKEILLTPREQEILELLAQGYTNGQIAKKLIISVNTVKNHVHNILEKLGVSNRA 200

Query: 235 GAIAYAV 241
             ++YA+
Sbjct: 201 KLVSYAM 207


>gi|253572144|ref|ZP_04849548.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|251838324|gb|EES66411.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 230

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + +LT REVE L  +++G  S EI+  L IS +TVNN+  +I++K  T     AI YA
Sbjct: 166 NIKLTKREVEILKLVNKGMFSKEISDSLSISVHTVNNHRQNILQKMNTDNVVEAINYA 223


>gi|307301502|ref|ZP_07581262.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|306903559|gb|EFN34147.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 305

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F LT RE E L WI++GK++ +I  ILG+S  TV  ++  I  K   + R+ A   A 
Sbjct: 240 QHFRLTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKAT 299

Query: 242 R 242
           +
Sbjct: 300 Q 300


>gi|239933171|ref|ZP_04690124.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 195

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G    LT RE+  L+  +EG    EIA  L +SR TV NY+A+ +RK   + R  AI
Sbjct: 130 GARMPLTTRELSVLSLAAEGAPVAEIAARLHLSRGTVRNYMATAIRKVGARNRVDAI 186


>gi|261420477|ref|YP_003254159.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319768147|ref|YP_004133648.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261376934|gb|ACX79677.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317113013|gb|ADU95505.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 391

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +++G ++ E A  L +S  TV +YI+S +RK   K R+ A+A A+R  +
Sbjct: 330 LSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKALRLGL 389

Query: 246 V 246
           +
Sbjct: 390 I 390


>gi|111023055|ref|YP_706027.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110822585|gb|ABG97869.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 208

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E LT ++EG T+ E+   L IS  TV  ++A I  K    TR+ A++ A+R  
Sbjct: 147 LTPREAELLTLMAEGMTNKELGKALFISEATVKTHLAHIYAKLGVDTRAAAVSVALRRQ 205


>gi|307316768|ref|ZP_07596210.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306897390|gb|EFN28134.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
          Length = 307

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F LT RE E L WI++GK++ +I  ILG+S  TV  ++  I  K   + R+ A   A 
Sbjct: 242 QHFRLTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKAT 301

Query: 242 R 242
           +
Sbjct: 302 Q 302


>gi|294010459|ref|YP_003543919.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673789|dbj|BAI95307.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 39/59 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ R+VEC+  +++GK+  EI  ILG+SR+TV+ Y+ S  R+   + R+  +  AVR+ 
Sbjct: 187 LSPRQVECIALVAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245


>gi|288573855|ref|ZP_06392212.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569596|gb|EFC91153.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 222

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L W+++G    EIA  L +S  TV N+I+ I+ K     R+ A+A+A R+ +
Sbjct: 153 LSERELEVLYWLAQGLNGQEIAERLSLSDKTVKNHISHILAKLKVSDRTQAVAWAWRSGL 212


>gi|89053644|ref|YP_509095.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88863193|gb|ABD54070.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 243

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE + L WI++GK++  IA IL +S +TV+ ++ SI RK     R+ A    V
Sbjct: 169 KEAALSPREKQVLDWIAKGKSNSVIAEILAMSPHTVDAHVRSIYRKLDVTDRTSAALRGV 228

Query: 242 RNNIV 246
            + ++
Sbjct: 229 GSGVL 233


>gi|160879389|ref|YP_001558357.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428055|gb|ABX41618.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M K  +  +G  ++LT +E E LT ++EG ++ EIA ++ +S  TV NY++++M K   +
Sbjct: 135 MQKKKEFPYGA-YQLTKKEYELLTMVAEGLSNKEIADVMFLSEGTVRNYLSNLMLKLDVR 193

Query: 232 TRSGA 236
            R+ A
Sbjct: 194 DRTQA 198


>gi|15614660|ref|NP_242963.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174716|dbj|BAB05816.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 210

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+  L  I EG  + E+A  LG+S  TV N  + I+ K A + R+    YA+R
Sbjct: 147 DPTLTPREIAILKCIGEGLNNKEVAERLGLSVGTVKNQTSQILDKLALRDRTQLAIYAIR 206

Query: 243 NNIV 246
           + +V
Sbjct: 207 HRLV 210


>gi|322412404|gb|EFY03312.1| Two-component response regulator yvqC [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K++D H     ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     
Sbjct: 135 IKAHDQHPDLHEELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDD 194

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA R+++V
Sbjct: 195 RTQAVVYAFRHHLV 208


>gi|312959686|ref|ZP_07774203.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas fluorescens WH6]
 gi|311286403|gb|EFQ64967.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas fluorescens WH6]
          Length = 254

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL W +EG T+ +IA  L  S   V+ ++AS M K   K R  A+  A   
Sbjct: 190 IHLTKRERECLKWAAEGLTAAQIATQLSRSLAVVSLHLASAMHKLGAKNRVQAVVRATHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|17546614|ref|NP_520016.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428913|emb|CAD15597.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT    R G    A
Sbjct: 183 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVGVAVLA 237


>gi|331646293|ref|ZP_08347396.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M605]
 gi|320196482|gb|EFW71105.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli WV_060327]
 gi|330910850|gb|EGH39360.1| transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli AA86]
 gi|331045045|gb|EGI17172.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M605]
          Length = 216

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 ILRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|297191605|ref|ZP_06909003.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719345|gb|EDY63253.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT I+EG  + +IA  LGIS  TV  +I ++  K     R+ A+ YA R  +
Sbjct: 156 LTAREGEVLTLIAEGLGNTDIAARLGISTATVKTHINNLFAKAGLHDRAQAVRYAYREGL 215


>gi|254392873|ref|ZP_05008042.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812928|ref|ZP_06771571.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706529|gb|EDY52341.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325527|gb|EFG07170.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 269

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 206 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 265

Query: 246 V 246
           +
Sbjct: 266 L 266


>gi|254387129|ref|ZP_05002401.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345946|gb|EDX26912.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 180 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 239

Query: 246 V 246
           +
Sbjct: 240 L 240


>gi|94497064|ref|ZP_01303637.1| transcriptional regulatory protein [Sphingomonas sp. SKA58]
 gi|94423436|gb|EAT08464.1| transcriptional regulatory protein [Sphingomonas sp. SKA58]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 39/59 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ R+VEC+  +++GK+  EI  ILG+SR+TV+ Y+ S  R+   + R+  +  AVR+ 
Sbjct: 187 LSPRQVECIALVAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245


>gi|229589152|ref|YP_002871271.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361018|emb|CAY47880.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 254

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL W ++G T+ EIA  L  S   V  ++AS M K   K R  A+  A   
Sbjct: 190 IHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|184201100|ref|YP_001855307.1| putative two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581330|dbj|BAG29801.1| putative two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 217

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+ RE E +  I++G T+DEIA    +S N+V +YI S  RK   + RS A+ + 
Sbjct: 141 GRRTGLSAREAEVIALITQGFTNDEIARNCYLSINSVKSYIRSAYRKMGVERRSQAVLWG 200

Query: 241 VRNNI 245
           V++ +
Sbjct: 201 VQHGM 205


>gi|138896712|ref|YP_001127165.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249414|ref|ZP_03148112.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
 gi|134268225|gb|ABO68420.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211171|gb|EDY05932.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
          Length = 225

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A++N
Sbjct: 162 LTRRECEVLQLLADGKSNRAIGETLYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKN 219


>gi|312891129|ref|ZP_07750652.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296437|gb|EFQ73583.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++T +E+E L       T  EIA ++ +S  TV+NY  S+ +K   K+R+G + YA++N
Sbjct: 149 LDITKKEMEFLKLACSELTYKEIADLMFVSPRTVDNYRESLFQKLTIKSRTGLVLYAIQN 208

Query: 244 NI 245
           +I
Sbjct: 209 DI 210


>gi|298695117|gb|ADI98339.1| probable response regulator protein [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|253773935|ref|YP_003036766.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161147|ref|YP_003044255.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B str.
           REL606]
 gi|300928412|ref|ZP_07143945.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|242376846|emb|CAQ31561.1| CsgD transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253324979|gb|ACT29581.1| transcriptional regulator, LuxR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973048|gb|ACT38719.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli B str. REL606]
 gi|253977262|gb|ACT42932.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BL21(DE3)]
 gi|300463575|gb|EFK27068.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|323962640|gb|EGB58218.1| luxR family protein regulatory protein [Escherichia coli H489]
 gi|323973370|gb|EGB68559.1| luxR family protein regulatory protein [Escherichia coli TA007]
          Length = 216

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|229164821|ref|ZP_04292645.1| Response regulator receiver [Bacillus cereus R309803]
 gi|228618645|gb|EEK75647.1| Response regulator receiver [Bacillus cereus R309803]
          Length = 221

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++ GK + EIA IL +S  TV  +I  I++K     R+ A   A+R  I
Sbjct: 160 LTKREIDVLQLLAYGKQNHEIAKILCVSEGTVKTHIHKILQKLEVTDRTQAAVMAIRQKI 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|307296696|ref|ZP_07576515.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877825|gb|EFN09050.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 39/59 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ R+VEC+  +++GK+  EI  ILG+SR+TV+ Y+ S  R+   + R+  +  AVR+ 
Sbjct: 187 LSPRQVECIALVAQGKSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245


>gi|302560338|ref|ZP_07312680.1| nitrate/nitrite response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477956|gb|EFL41049.1| nitrate/nitrite response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 267

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 204 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 263

Query: 246 V 246
           +
Sbjct: 264 L 264


>gi|218291120|ref|ZP_03495135.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|258511821|ref|YP_003185255.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218238931|gb|EED06139.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|257478547|gb|ACV58866.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 75

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L +S  TV N+I+++M+K   K RS A+   VR
Sbjct: 13  LTNREREVFELLVQDKTTKEIASQLFVSEKTVRNHISNVMKKLNVKGRSQAVVELVR 69


>gi|212638430|ref|YP_002314950.1| GerE family transcriptional regulator [Anoxybacillus flavithermus
           WK1]
 gi|212559910|gb|ACJ32965.1| Transcriptional regulator GerE family [Anoxybacillus flavithermus
           WK1]
          Length = 89

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +H  +   LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+
Sbjct: 19  IHLNQKPLLTKREREVFELLLQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAV 78

Query: 238 AYAVR 242
              +R
Sbjct: 79  VELLR 83


>gi|148265144|ref|YP_001231850.1| regulatory protein, LuxR [Geobacter uraniireducens Rf4]
 gi|146398644|gb|ABQ27277.1| transcriptional regulator, LuxR family [Geobacter uraniireducens
           Rf4]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE E L WI +GK+S +I+ IL IS  TV  ++ ++MRK    +R  A+A A+
Sbjct: 187 ITIREREVLNWIKKGKSSWDISTILAISERTVKFHVDNVMRKLDAVSRIHAVAVAL 242


>gi|283471119|emb|CAQ50330.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|229012624|ref|ZP_04169797.1| Response regulator receiver [Bacillus mycoides DSM 2048]
 gi|228748647|gb|EEL98499.1| Response regulator receiver [Bacillus mycoides DSM 2048]
          Length = 215

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++ GK + EIA IL +S  TV  +I +I++K     R+ A   A+R  I
Sbjct: 154 LTKREIDVLQLLAYGKQNHEIAKILYVSEGTVKTHIHNILQKLDVTDRTQAAVMAIRKKI 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|226314987|ref|YP_002774883.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097937|dbj|BAH46379.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++EGK++  I   L IS  TV N+++SI++K   + R+ A+  +++N 
Sbjct: 173 LTRREREVLQLMAEGKSNRAIGEFLFISEKTVKNHVSSILQKLNVQDRTQAVVISIKNG 231


>gi|207742850|ref|YP_002259242.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609]
 gi|206594244|emb|CAQ61171.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT    R G    A
Sbjct: 183 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVGVAVLA 237


>gi|223934862|ref|ZP_03626781.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896315|gb|EEF62757.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG+T+ +IA  LGIS  TV  +   +M K      +G   YA+   I
Sbjct: 144 LTSREAEVLQLIAEGQTNKQIAFELGISAKTVEKHRQQVMNKLKIHDVAGLTRYALSKGI 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|153837454|ref|ZP_01990121.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|149749254|gb|EDM60039.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|328470183|gb|EGF41094.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 217

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ L+ + +G ++ +IA  L +S +TV +++ SI RK   K R  AI +A R
Sbjct: 155 EMELTRREMQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKR 214

Query: 243 N 243
           N
Sbjct: 215 N 215


>gi|121606230|ref|YP_983559.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120595199|gb|ABM38638.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 275

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E + W++ GK   EIA +L IS  TV  ++  I  K   +TR+ A+  A+
Sbjct: 204 LTQREAEVMHWLACGKMDAEIAALLAISPRTVQKHLEHIYVKLGVETRTAAVMRAL 259


>gi|302551827|ref|ZP_07304169.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469445|gb|EFL32538.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 270

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 207 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 266

Query: 246 V 246
           +
Sbjct: 267 L 267


>gi|167838741|ref|ZP_02465600.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 137

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W   GKT+ EI+ ILGIS  T+  ++++  RK     R+ A+  A    
Sbjct: 76  DLTARERESLQWAGRGKTAWEISKILGISERTIVFHLSNAARKIGANNRAQAVVMASARG 135

Query: 245 IV 246
           ++
Sbjct: 136 LI 137


>gi|86740248|ref|YP_480648.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86567110|gb|ABD10919.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 156

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE+E LT ++ G ++ E A  L I   TV  Y+ SIMRK   + R+ A+  A ++
Sbjct: 93  FRLTLREMEVLTLVATGCSNVEAAEHLTIRAETVKTYMRSIMRKMGVRNRTAAVHAARQS 152

Query: 244 NIV 246
            ++
Sbjct: 153 GLL 155


>gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 245

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EI   L +S  TV  Y++S++RKT T  R+  + +A+ + +
Sbjct: 184 LTPREQEVLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHGL 243

Query: 246 V 246
           V
Sbjct: 244 V 244


>gi|320322570|gb|EFW78663.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320330177|gb|EFW86163.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330875366|gb|EGH09515.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330987495|gb|EGH85598.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+  G    LT R+ E L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS A
Sbjct: 138 DLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVSTRSAA 197

Query: 237 IA 238
            A
Sbjct: 198 AA 199


>gi|319793774|ref|YP_004155414.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315596237|gb|ADU37303.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 264

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G  ++EIA+ L IS  TVN ++ +I RK    TR+ A+++A    +
Sbjct: 204 LSAREREVLRLVATGYVTEEIALQLTISAQTVNAHVKNIYRKLHAHTRAQAVSFASHRGL 263

Query: 246 V 246
           +
Sbjct: 264 L 264


>gi|315657926|ref|ZP_07910800.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|315496962|gb|EFU85283.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE++ L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA++NN
Sbjct: 146 KLSKREIDVLREMVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNN 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|289550436|ref|YP_003471340.1| Two-component response regulator-like protein [Staphylococcus
           lugdunensis HKU09-01]
 gi|289179968|gb|ADC87213.1| Two-component response regulator-like protein [Staphylococcus
           lugdunensis HKU09-01]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE++ L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA++NN
Sbjct: 146 KLSKREIDVLREMVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNN 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|86750432|ref|YP_486928.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573460|gb|ABD08017.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           HaA2]
          Length = 240

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L WI+EGKT  EI+ IL +S + V+     I  K     R  A+A A+R+ I
Sbjct: 179 LTKREADVLHWIAEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALAMRSGI 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|28900213|ref|NP_799868.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365852|ref|ZP_05778348.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|260880775|ref|ZP_05893130.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260896515|ref|ZP_05905011.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|28808524|dbj|BAC61701.1| putative transcriptional regulator, LuxR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308089272|gb|EFO38967.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092579|gb|EFO42274.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308114985|gb|EFO52525.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
          Length = 217

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ L+ + +G ++ +IA  L +S +TV +++ SI RK   K R  AI +A R
Sbjct: 155 EMELTRREMQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKR 214

Query: 243 N 243
           N
Sbjct: 215 N 215


>gi|83749981|ref|ZP_00946930.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551]
 gi|83723351|gb|EAP70580.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551]
          Length = 263

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT    R G    A
Sbjct: 194 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVGVAVLA 248


>gi|301053804|ref|YP_003792015.1| response regulator [Bacillus anthracis CI]
 gi|300375973|gb|ADK04877.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 149 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207


>gi|291299028|ref|YP_003510306.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568248|gb|ADD41213.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++ + H G D  LT RE E L W++ G ++DEIA  L +S  TV  ++   M K   + R
Sbjct: 147 RTGEPHPGLD-SLTARETEILGWVATGLSNDEIAERLVVSPATVRTHVGRAMMKLRARDR 205

Query: 234 SGAIAYAVRNNI 245
           +  +  A R++I
Sbjct: 206 AQLVVIAYRSDI 217


>gi|166367722|ref|YP_001659995.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
 gi|166090095|dbj|BAG04803.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
          Length = 223

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S+ +   +   LT RE E L WI++ K++  IA ++G S  TV  ++  I  K   +TR+
Sbjct: 142 SFSIAALELLGLTKREAEVLFWIAQDKSNAAIAKVIGCSEGTVRKHLEHIHGKLGVQTRT 201

Query: 235 GAIAYAVRN 243
            A+  A+  
Sbjct: 202 AAVIVALEK 210


>gi|52222873|gb|AAU34214.1| two component response regulator MppU [Streptomyces hygroscopicus]
          Length = 222

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 33/58 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT REVE    ++EGKT+ +IA  L IS  TV  ++ASI RK   + R G    A
Sbjct: 153 DSVLTEREVEIAGKVAEGKTNSDIARELFISAGTVKTHVASIQRKLQVRNRVGVAVRA 210


>gi|107101332|ref|ZP_01365250.1| hypothetical protein PaerPA_01002366 [Pseudomonas aeruginosa PACS2]
 gi|296389701|ref|ZP_06879176.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAb1]
          Length = 160

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYA 240
           +  LT RE E L W + GKT  EI +IL I + TV  +I + MRK  ++ K  +   AYA
Sbjct: 96  NVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYA 155

Query: 241 V 241
           +
Sbjct: 156 I 156


>gi|253732505|ref|ZP_04866670.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253723786|gb|EES92515.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|229158912|ref|ZP_04286969.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228624523|gb|EEK81293.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIARALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|300703751|ref|YP_003745353.1| transcriptional regulator protein, luxr family [Ralstonia
           solanacearum CFBP2957]
 gi|299071414|emb|CBJ42733.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CFBP2957]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT    R G    A
Sbjct: 183 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVGVAVLA 237


>gi|299538340|ref|ZP_07051623.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298725927|gb|EFI66519.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 210

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +++GK + EIA  L I+  TV  ++++I+ K   + R+ A+ YA +N 
Sbjct: 148 QLTEREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNG 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|260899471|ref|ZP_05907866.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|308109241|gb|EFO46781.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
          Length = 217

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ L+ + +G ++ +IA  L +S +TV +++ SI RK   K R  AI +A R
Sbjct: 155 EMELTRRELQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKR 214

Query: 243 N 243
           N
Sbjct: 215 N 215


>gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 245

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EI   L +S  TV  Y++S++RKT T  R+  + +A+ + +
Sbjct: 184 LTPREQEVLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHGL 243

Query: 246 V 246
           V
Sbjct: 244 V 244


>gi|21283518|ref|NP_646606.1| hypothetical protein MW1789 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484090|ref|YP_041314.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486665|ref|YP_043886.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650637|ref|YP_186730.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161726|ref|YP_494481.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195671|ref|YP_500477.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221952|ref|YP_001332774.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510065|ref|YP_001575724.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142169|ref|ZP_03566662.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253735272|ref|ZP_04869437.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257425960|ref|ZP_05602384.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428625|ref|ZP_05605023.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431262|ref|ZP_05607639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433942|ref|ZP_05610300.1| response regulator [Staphylococcus aureus subsp. aureus E1410]
 gi|257436858|ref|ZP_05612902.1| response regulator [Staphylococcus aureus subsp. aureus M876]
 gi|258452662|ref|ZP_05700661.1| DNA-binding response regulator [Staphylococcus aureus A5948]
 gi|262050140|ref|ZP_06022994.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30]
 gi|262052678|ref|ZP_06024870.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3]
 gi|282904423|ref|ZP_06312311.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906246|ref|ZP_06314101.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282909165|ref|ZP_06316983.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911471|ref|ZP_06319273.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914643|ref|ZP_06322429.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282917116|ref|ZP_06324874.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|282919609|ref|ZP_06327344.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924179|ref|ZP_06331854.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A9765]
 gi|282924989|ref|ZP_06332655.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|283770932|ref|ZP_06343824.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|283958601|ref|ZP_06376052.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|284024894|ref|ZP_06379292.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|293503715|ref|ZP_06667562.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510736|ref|ZP_06669441.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|293537278|ref|ZP_06671958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|294850276|ref|ZP_06791011.1| two-component system [Staphylococcus aureus A9754]
 gi|295428426|ref|ZP_06821055.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297207436|ref|ZP_06923873.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297590607|ref|ZP_06949245.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300911520|ref|ZP_07128965.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380550|ref|ZP_07363225.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|21204959|dbj|BAB95654.1| MW1789 [Staphylococcus aureus subsp. aureus MW2]
 gi|49242219|emb|CAG40926.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49245108|emb|CAG43574.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284823|gb|AAW36917.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus COL]
 gi|87127700|gb|ABD22214.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203229|gb|ABD31039.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150374752|dbj|BAF68012.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368874|gb|ABX29845.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726679|gb|EES95408.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271654|gb|EEV03800.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275466|gb|EEV06953.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278210|gb|EEV08858.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282035|gb|EEV12172.1| response regulator [Staphylococcus aureus subsp. aureus E1410]
 gi|257284209|gb|EEV14332.1| response regulator [Staphylococcus aureus subsp. aureus M876]
 gi|257859637|gb|EEV82486.1| DNA-binding response regulator [Staphylococcus aureus A5948]
 gi|259159427|gb|EEW44479.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3]
 gi|259161765|gb|EEW46353.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30]
 gi|282313355|gb|EFB43751.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|282317419|gb|EFB47793.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|282319603|gb|EFB49955.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|282321824|gb|EFB52149.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325166|gb|EFB55476.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327429|gb|EFB57724.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331538|gb|EFB61052.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282592974|gb|EFB97976.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A9765]
 gi|282596041|gb|EFC01005.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|283461079|gb|EFC08169.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|283790750|gb|EFC29567.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920123|gb|EFD97191.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095381|gb|EFE25646.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466627|gb|EFF09148.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|294822892|gb|EFG39326.1| two-component system [Staphylococcus aureus A9754]
 gi|295127826|gb|EFG57463.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887899|gb|EFH26795.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297575493|gb|EFH94209.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300887152|gb|EFK82352.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302333513|gb|ADL23706.1| two-component response regulator receiver protein [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|302751657|gb|ADL65834.1| two-component response regulator receiver protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304340879|gb|EFM06804.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312437687|gb|ADQ76758.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315195759|gb|EFU26146.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
 gi|315196803|gb|EFU27147.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141302|gb|EFW33147.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143570|gb|EFW35350.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323438857|gb|EGA96594.1| two-component response regulator protein [Staphylococcus aureus
           O11]
 gi|323441701|gb|EGA99346.1| two-component response regulator protein [Staphylococcus aureus
           O46]
 gi|329314524|gb|AEB88937.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329729501|gb|EGG65903.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329732948|gb|EGG69292.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|110637079|ref|YP_677286.1| fimbrial Z protein; signal transducer [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279760|gb|ABG57946.1| fimbrial Z protein; probable signal transducer [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 212

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + K +  +   D   + RE+E L +I +G+++++IA IL IS  T+  +  +IM+K   K
Sbjct: 135 LLKGFLANQTSDSIFSDRELEVLRYICKGRSNEQIADILFISEKTIATHRRNIMKKAGVK 194

Query: 232 TRSGAIAYAVRNNIV 246
             +  I +A+ N IV
Sbjct: 195 KSTELIVWALDNKIV 209


>gi|30262277|ref|NP_844654.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Ames]
 gi|47527561|ref|YP_018910.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49185120|ref|YP_028372.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Sterne]
 gi|49479552|ref|YP_036377.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143191|ref|YP_083638.1| response regulator [Bacillus cereus E33L]
 gi|65319569|ref|ZP_00392528.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|165870591|ref|ZP_02215245.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|167632733|ref|ZP_02391059.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
 gi|167639661|ref|ZP_02397931.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
 gi|170687057|ref|ZP_02878276.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|170706750|ref|ZP_02897209.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|177649611|ref|ZP_02932613.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190565731|ref|ZP_03018651.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|196033705|ref|ZP_03101116.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196039895|ref|ZP_03107198.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
 gi|196046921|ref|ZP_03114142.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|218903406|ref|YP_002451240.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225864244|ref|YP_002749622.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|227814920|ref|YP_002814929.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228914867|ref|ZP_04078473.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228927331|ref|ZP_04090391.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933571|ref|ZP_04096421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945885|ref|ZP_04108228.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229121819|ref|ZP_04251039.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|229184493|ref|ZP_04311697.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|229600887|ref|YP_002866616.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
 gi|254684846|ref|ZP_05148706.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722254|ref|ZP_05184042.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737292|ref|ZP_05194996.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743522|ref|ZP_05201207.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751608|ref|ZP_05203645.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760128|ref|ZP_05212152.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256908|gb|AAP26140.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Ames]
 gi|47502709|gb|AAT31385.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49179047|gb|AAT54423.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Sterne]
 gi|49331108|gb|AAT61754.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51976660|gb|AAU18210.1| response regulator [Bacillus cereus E33L]
 gi|164713746|gb|EDR19269.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|167512370|gb|EDR87746.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
 gi|167531545|gb|EDR94210.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
 gi|170128481|gb|EDS97349.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|170669108|gb|EDT19852.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|172084685|gb|EDT69743.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190563758|gb|EDV17723.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993385|gb|EDX57342.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196022296|gb|EDX60982.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|196029154|gb|EDX67758.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
 gi|218535372|gb|ACK87770.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225790573|gb|ACO30790.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|227003571|gb|ACP13314.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228598993|gb|EEK56609.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228661608|gb|EEL17228.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228813759|gb|EEM60037.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826031|gb|EEM71814.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832343|gb|EEM77920.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228844783|gb|EEM89828.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229265295|gb|ACQ46932.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 149 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207


>gi|325972442|ref|YP_004248633.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324027680|gb|ADY14439.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy]
          Length = 314

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F    +   K F LT RE E  + I++G T+ EIA  LGIS  TV  +I ++ +K   ++
Sbjct: 245 FGELSLETAKRFLLTAREQEMASLIAQGLTNKEIAFRLGISEATVRTHIYNLFQKVGVQS 304

Query: 233 R 233
           R
Sbjct: 305 R 305


>gi|325104954|ref|YP_004274608.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM
           12145]
 gi|324973802|gb|ADY52786.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM
           12145]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 52/195 (26%)

Query: 57  GASHFLL-----VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           G S +LL      + + FQ+ KL   +   W + + R + L  + +   +L +   + CP
Sbjct: 86  GMSGYLLEGDFSKQHNFFQQVKLHKEIDYTWFYTMSRIIKLQTQQE---LLHKLMLISCP 142

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +           AG+DN        V R           GR++ +D             N
Sbjct: 143 I-----------AGIDNL-------VKRF----------GRVLDQD-------------N 161

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +  ++ K   LT RE E ++ +S+GK+S EIA +L IS NTV  +  +I++K   K
Sbjct: 162 YIRQHYPNFAK---LTKREKEIISLLSDGKSSPEIADMLFISANTVITHRKNIVKKLGMK 218

Query: 232 TRSGAIAYAVRNNIV 246
           + +  + +A+  ++V
Sbjct: 219 SFAHLVRFAIAFDLV 233


>gi|289705916|ref|ZP_06502294.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58]
 gi|289557362|gb|EFD50675.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58]
          Length = 169

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE++ L    EG +   IA  L ++  TV NY++S M+KT T TR  A  +A R
Sbjct: 106 DCPLTDRELDALRATGEGYSVARIAQQLHLAEGTVRNYLSSAMQKTQTSTRHDAARFARR 165

Query: 243 NN 244
           + 
Sbjct: 166 HE 167


>gi|258423125|ref|ZP_05686019.1| response regulator receiver [Staphylococcus aureus A9635]
 gi|257846689|gb|EEV70709.1| response regulator receiver [Staphylococcus aureus A9635]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|207723944|ref|YP_002254342.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2]
 gi|206589151|emb|CAQ36113.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT    R G
Sbjct: 183 LSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCANRVG 232


>gi|82751502|ref|YP_417243.1| two-component response regulator protein [Staphylococcus aureus
           RF122]
 gi|82657033|emb|CAI81470.1| probable two-component response regulator protein [Staphylococcus
           aureus RF122]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|290959922|ref|YP_003491104.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260649448|emb|CBG72563.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 249

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 186 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 245

Query: 246 V 246
           +
Sbjct: 246 L 246


>gi|146295566|ref|YP_001179337.1| two component LuxR family transcriptional regulator
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409142|gb|ABP66146.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 211

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 165 LAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +A Y +++ K      + K   L+ RE+E    IS+G ++ EIA +L IS  TV NYI S
Sbjct: 130 IALYVSDVLKRTSKQLFEKTQNLSERELEIAKLISQGYSNKEIARMLFISEGTVRNYITS 189

Query: 224 IMRKTATKTRSGAIAY 239
           I++K   K R+    Y
Sbjct: 190 ILQKLNLKNRTQIAVY 205


>gi|205372373|ref|ZP_03225187.1| two component LuxR family transcriptional regulator [Bacillus
           coahuilensis m4-4]
          Length = 212

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ELT RE E L  +S+G ++ E+A  LG+S  TV NY+A+I+ K     R
Sbjct: 156 ELTSRESEVLFLLSKGASNSEVAETLGLSNKTVYNYVANILNKLQVSDR 204


>gi|15924838|ref|NP_372372.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927422|ref|NP_374955.1| hypothetical protein SA1666 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268320|ref|YP_001247263.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394382|ref|YP_001317057.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980164|ref|YP_001442423.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253315179|ref|ZP_04838392.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|255006636|ref|ZP_05145237.2| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257793793|ref|ZP_05642772.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|258413730|ref|ZP_05682003.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|258420763|ref|ZP_05683702.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|258438424|ref|ZP_05689708.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|258443869|ref|ZP_05692208.1| two component transcriptional regulator [Staphylococcus aureus
           A8115]
 gi|258447324|ref|ZP_05695471.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258448193|ref|ZP_05696320.1| response regulator receiver [Staphylococcus aureus A6224]
 gi|258453374|ref|ZP_05701357.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|269203485|ref|YP_003282754.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282895146|ref|ZP_06303365.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A8117]
 gi|282928586|ref|ZP_06336185.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A10102]
 gi|295406155|ref|ZP_06815963.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819]
 gi|296276020|ref|ZP_06858527.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297244922|ref|ZP_06928799.1| two-component system [Staphylococcus aureus A8796]
 gi|13701641|dbj|BAB42934.1| SA1666 [Staphylococcus aureus subsp. aureus N315]
 gi|14247620|dbj|BAB58010.1| two-component response regulator homolog [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147741389|gb|ABQ49687.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946834|gb|ABR52770.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722299|dbj|BAF78716.1| two-component response regulator homolog [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257787765|gb|EEV26105.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|257839517|gb|EEV63988.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|257843367|gb|EEV67777.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|257848468|gb|EEV72459.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|257851275|gb|EEV75218.1| two component transcriptional regulator [Staphylococcus aureus
           A8115]
 gi|257853911|gb|EEV76867.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257858432|gb|EEV81308.1| response regulator receiver [Staphylococcus aureus A6224]
 gi|257864466|gb|EEV87211.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262075775|gb|ACY11748.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282589795|gb|EFB94880.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A10102]
 gi|282762490|gb|EFC02631.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A8117]
 gi|285817528|gb|ADC38015.1| Two-component response regulator-like protein [Staphylococcus
           aureus 04-02981]
 gi|294969152|gb|EFG45173.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819]
 gi|297178002|gb|EFH37250.1| two-component system [Staphylococcus aureus A8796]
 gi|312830220|emb|CBX35062.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130508|gb|EFT86494.1| hypothetical protein CGSSa03_09695 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727450|gb|EGG63906.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|269941319|emb|CBI49716.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|254994407|ref|ZP_05276597.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
          Length = 187

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++
Sbjct: 123 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 182

Query: 245 IV 246
           +V
Sbjct: 183 LV 184


>gi|260466579|ref|ZP_05812767.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029585|gb|EEW30873.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 525

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E L  I+ G T+ E A  L IS  T +++I S+  K    TR+ A  YAV + +
Sbjct: 458 MTPREIEVLRLIAAGLTAKEAARKLDISPKTADHHIQSVYAKIGVTTRAAAALYAVEHGL 517

Query: 246 V 246
           V
Sbjct: 518 V 518


>gi|229094465|ref|ZP_04225535.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228688929|gb|EEL42758.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 33/61 (54%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT+ EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTASEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|226310381|ref|YP_002770275.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093329|dbj|BAH41771.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 199

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +G++  LT RE E L  +++GK + EIA  L I+  TV NYI+ I+ K     R  A
Sbjct: 129 DEAYGQENPLTEREKEVLLLVADGKNTKEIASQLYITTGTVRNYISVILDKLGVSNRIEA 188

Query: 237 IAYA 240
           I ++
Sbjct: 189 IMHS 192


>gi|197105564|ref|YP_002130941.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196478984|gb|ACG78512.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 226

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G T +EIA  LG+SR+TV ++I +I RK    TR  A+  AV+  +
Sbjct: 164 LTPRELDILWGIAKGLTYNEIADRLGLSRHTVPSHIKAIYRKLQVATRGEAVYEAVQCGL 223

Query: 246 V 246
           +
Sbjct: 224 I 224


>gi|171316408|ref|ZP_02905627.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098441|gb|EDT43244.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 237

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDF------ELTGREVECL 194
           IGL+ +   G  I    L E G   ++ ANM   +  +H    F      ELT RE E L
Sbjct: 125 IGLVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHLLAKFVPEYAVELTARERETL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRK-TATKTRSGAIAYAV 241
            W + GKT  EI  I+ +   TV  ++ + MRK  AT     A+  A+
Sbjct: 185 QWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAM 232


>gi|169827260|ref|YP_001697418.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168991748|gb|ACA39288.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +++GK + EIA  L I+  TV  ++++I+ K   + R+ A+ YA +N 
Sbjct: 142 QLTDREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNG 201

Query: 245 I 245
           +
Sbjct: 202 L 202


>gi|84501462|ref|ZP_00999667.1| putative transcription regulator protein [Oceanicola batsensis
           HTCC2597]
 gi|84390753|gb|EAQ03241.1| putative transcription regulator protein [Oceanicola batsensis
           HTCC2597]
          Length = 232

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LTGRE++ L  +S GK +  IA  LG+S +TV  +I  ++ K   + R+GA  + ++N
Sbjct: 163 LTGRELQVLELVSAGKQNKSIANDLGLSEHTVKLHIHHVLAKLNVRNRTGATTWFLQN 220


>gi|298490188|ref|YP_003720365.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298232106|gb|ADI63242.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 227

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 170 ANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +N   S  +H  K    LT RE E L  ++ G ++ +I   L +S  TV  Y++S++RKT
Sbjct: 149 SNHALSTQIHAPKLLSSLTTREQEVLELLTHGLSNADIGNQLHLSPRTVEKYVSSLLRKT 208

Query: 229 ATKTRSGAIAYAVRNNIV 246
            T  R+  + +A+++ +V
Sbjct: 209 LTSNRAELVRFAMKHGLV 226


>gi|148240620|ref|YP_001226007.1| LuxR family transcriptional regulator [Synechococcus sp. WH 7803]
 gi|147849159|emb|CAK24710.1| Transcriptional regulator, luxR family [Synechococcus sp. WH 7803]
          Length = 92

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 39/59 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  L+ RE+E +  +SEG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+
Sbjct: 11  NVSLSARELEIIELVSEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAM 69


>gi|134100725|ref|YP_001106386.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913348|emb|CAM03461.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 202

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE + L   + G+T+ EIA  LG++R+TV  Y+ + MRK   + R   IA A +
Sbjct: 139 DTGLTQREYDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNRIELIAKAAQ 198

Query: 243 NNIV 246
           + ++
Sbjct: 199 SGLL 202


>gi|21221451|ref|NP_627230.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787364|ref|ZP_05525795.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289771263|ref|ZP_06530641.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799203|emb|CAB90919.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701462|gb|EFD68891.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 189 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 248

Query: 246 V 246
           +
Sbjct: 249 L 249


>gi|269125106|ref|YP_003298476.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268310064|gb|ACY96438.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 954

 Score = 45.4 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + LT RE+E L  +++G+T+ EIA +L IS  TV+ ++++I+ K    TR  A A A R
Sbjct: 891 YGLTPRELEVLRLVAQGRTNREIAEVLFISAKTVSVHVSNILAKLQVPTRGEAAATAHR 949


>gi|221068174|ref|ZP_03544279.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220713197|gb|EED68565.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 181 GKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           G D    L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   ++R+ A+ 
Sbjct: 186 GSDMSDRLSSRECEVLRMVASGNTSAEIGASLEISTMTVNTHIKNIYRKLQVRSRAQAVR 245

Query: 239 YA 240
           +A
Sbjct: 246 FA 247


>gi|170077264|ref|YP_001733902.1| LuxR family transcriptional regulator [Synechococcus sp. PCC 7002]
 gi|169884933|gb|ACA98646.1| transcriptional regulator protein, LuxR family [Synechococcus sp.
           PCC 7002]
          Length = 91

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  L+ RE+E +  ++ G T+ EIA  L IS+ TV+N+I++I+ KTAT  R   + +A
Sbjct: 7   ASEAALSEREIEIVDLVAAGLTNHEIAARLDISKRTVDNHISNILTKTATDNRVSLVRWA 66

Query: 241 VR 242
           ++
Sbjct: 67  LQ 68


>gi|320162421|ref|YP_004175646.1| putative LysR family transcriptional regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996275|dbj|BAJ65046.1| putative LysR family transcriptional regulator [Anaerolinea
           thermophila UNI-1]
          Length = 455

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G ++ EIA  L IS NTV  ++ +I  K    +R+ A  YA+RN I
Sbjct: 9   LSEREIEILRLVATGASNKEIAQALSISPNTVKVHLRNIFAKIGVVSRTEATLYAIRNGI 68

Query: 246 V 246
            
Sbjct: 69  T 69


>gi|315649841|ref|ZP_07902924.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315274815|gb|EFU38196.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 240

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRII--LRDRLWEIGLLAA 167
           VF TL +        D    SL   +  +  G   + PK  G++I  LR R+  +    A
Sbjct: 99  VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLR-RMTYVNEAGA 157

Query: 168 YQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +  +   V +  G++  LT RE E L  ++EGK++  I   L IS  TV N+++SI+
Sbjct: 158 MAESGTREAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217

Query: 226 RKTATKTRSGAIAYAVR 242
           +K     R+ A+  +++
Sbjct: 218 QKMEVDDRTQAVINSIK 234


>gi|212640416|ref|YP_002316936.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561896|gb|ACJ34951.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 260

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  IA  L IS  TV N++++I++K     R+ A+  A++N 
Sbjct: 197 LTRRECEVLQLLADGKSNKGIADALYISEKTVKNHVSNILQKLNVNDRTQAVVVAIKNG 255


>gi|218248856|ref|YP_002374227.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|257061918|ref|YP_003139806.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|218169334|gb|ACK68071.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801]
 gi|256592084|gb|ACV02971.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802]
          Length = 96

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 40/57 (70%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+GRE+E L  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   + +A++
Sbjct: 12  LSGREIEILDLVATGLTNLEIAEELEISKRTVDNHISNILTKTKTENRVELVRWALQ 68


>gi|148553756|ref|YP_001261338.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148498946|gb|ABQ67200.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 904

 Score = 45.4 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE E L  I EG +S EIA  + +S  TV  Y  S+ RK     RS AI+YA ++NI
Sbjct: 832 LGPREREVLDCIVEGLSSKEIAWRMSLSVGTVLGYRKSLYRKIGVNCRSAAISYARQSNI 891


>gi|29829791|ref|NP_824425.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606900|dbj|BAC70960.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           DF L+ REVE +  I+ G  + +IA    IS  TV N+I  I  K  + TRS AIA+
Sbjct: 176 DFGLSSREVEVMDLIAAGMNNRQIAATCFISEKTVKNHINRIFAKLHSATRSEAIAH 232


>gi|296139134|ref|YP_003646377.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027268|gb|ADG78038.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 222

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  +  G ++D+IA  L IS  TV ++I SI  K   + R+ AI +A  N +
Sbjct: 158 LTAREVDVLGLVGRGLSNDDIAAELVISIVTVKSHIGSIFTKLGVRNRAEAIVWAFDNGV 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|291295193|ref|YP_003506591.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470152|gb|ADD27571.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 216

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ REV+ L  +++G T+ EIA  L +S  TV N ++ I +K     R+ A  YA+R  
Sbjct: 150 ELSEREVQILRLVAQGYTNLEIAAELSLSEKTVRNRLSDIFQKLHLNNRTQAALYALREG 209

Query: 245 IV 246
           + 
Sbjct: 210 LA 211


>gi|225180998|ref|ZP_03734445.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168195|gb|EEG76999.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 219

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  + EGKT+ EI   L +S  TV N+++ I+ K     RS A A+  R ++
Sbjct: 151 LSKREEEILHLVGEGKTNKEIGRELFLSEKTVRNHVSRILDKLGVSNRSQAAAFMARRSV 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|229589665|ref|YP_002871784.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361531|emb|CAY48407.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 504

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE + L  I EG    EIA+ L ++ NTV N++A++  K    +RS AI +A
Sbjct: 435 DLTARERDVLGLICEGLADKEIALRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWA 490


>gi|258650793|ref|YP_003199949.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554018|gb|ACV76960.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 215

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L  +++G+T+ EIA  L I+ +TV  ++AS+MRK   + R
Sbjct: 155 LTAREEEVLVTVAQGRTNSEIASQLFITSSTVKAHVASLMRKLGARNR 202


>gi|108797570|ref|YP_637767.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119866657|ref|YP_936609.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|126433193|ref|YP_001068884.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|108767989|gb|ABG06711.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119692746|gb|ABL89819.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
 gi|126232993|gb|ABN96393.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 215

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  ++EG ++ EIA  L IS  TV+ + A+I+ K   + R     YA+R
Sbjct: 150 DTILTPREEEVLKLVAEGYSTREIAATLSISAKTVDRHRANILAKLGLRDRLALTRYAIR 209

Query: 243 NNIV 246
             ++
Sbjct: 210 AGLI 213


>gi|295695307|ref|YP_003588545.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
 gi|295410909|gb|ADG05401.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
          Length = 75

 Score = 45.1 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I+++M+K   K RS A+   VR
Sbjct: 13  LTAREREVFELLVQDKTTREIAEQLYISEKTVRNHISNVMKKLNVKGRSQAVVELVR 69


>gi|229051230|ref|ZP_04194758.1| Response regulator receiver [Bacillus cereus AH676]
 gi|228722128|gb|EEL73545.1| Response regulator receiver [Bacillus cereus AH676]
          Length = 214

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++ GK + EIA IL +S  TV  +I +I++K     R+ A   A+R  I
Sbjct: 153 LTKREIDVLQLLAYGKQNHEIAKILFVSDGTVKTHIHNILQKLDVTDRTQAAVMAIRKKI 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|254424512|ref|ZP_05038230.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192001|gb|EDX86965.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 211

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++ +LT RE+E L  ++EGK++ EIA  L IS  TV  +I +I+ K     R+ A+  A+
Sbjct: 143 QESDLTDRELEVLGELTEGKSNLEIAKALSISEGTVKFHINNILSKFGVSDRTQAVITAL 202

Query: 242 RNNI 245
           R  I
Sbjct: 203 RRGI 206


>gi|126650153|ref|ZP_01722386.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593325|gb|EAZ87287.1| two-component response regulator [Bacillus sp. B14905]
          Length = 210

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++GK + EIA  L I+  TV  ++++I+ K   + R+ A+ YA +N +
Sbjct: 149 LTDREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 208


>gi|219848256|ref|YP_002462689.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219542515|gb|ACL24253.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 236

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTSD 204
           +GR ++ D +     +AA   + F+       +D       LT RE+E L  I+ G ++ 
Sbjct: 125 RGRYLINDAVLARPNVAARVLHQFRELAATEEEDSASLFAPLTSREIEILDCIARGLSNK 184

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L IS  TV N+I SI+ K     R+ A+  A++  
Sbjct: 185 EIANELSISGQTVKNHITSILSKLQVNDRTMAVIVAIKKG 224


>gi|15675498|ref|NP_269672.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|71911145|ref|YP_282695.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|13622694|gb|AAK34393.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|71853927|gb|AAZ51950.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
          Length = 213

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K++D H     ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     
Sbjct: 135 IKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVGD 194

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA R+++V
Sbjct: 195 RTQAVVYAFRHHLV 208


>gi|220935339|ref|YP_002514238.1| two component transcriptional regulator, LuxR family
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996649|gb|ACL73251.1| two component transcriptional regulator, LuxR family
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 227

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ++EG+++  IA  LGIS  TV  ++ +I+RK    +R  A   AV+  
Sbjct: 152 ELTPREGEILALLAEGQSNKVIARNLGISDGTVKLHVKAILRKLGVHSRVEAAVLAVQQG 211

Query: 245 I 245
           +
Sbjct: 212 L 212


>gi|194438019|ref|ZP_03070112.1| transcriptional regulator CsgD [Escherichia coli 101-1]
 gi|194422955|gb|EDX38949.1| transcriptional regulator CsgD [Escherichia coli 101-1]
          Length = 190

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 98  VLRGECYFTQKLASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFIS 157

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 158 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 187


>gi|261409652|ref|YP_003245893.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329928696|ref|ZP_08282545.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
 gi|261286115|gb|ACX68086.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328937477|gb|EGG33895.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
          Length = 240

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRII--LRDRLWEIGLLAA 167
           VF TL +        D    SL   +  +  G   + PK  G++I  LR R+  +    A
Sbjct: 99  VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIHQLR-RMTYVNEAGA 157

Query: 168 YQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +  +   V +  G++  LT RE E L  ++EGK++  I   L IS  TV N+++SI+
Sbjct: 158 MAESGSREAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217

Query: 226 RKTATKTRSGAIAYAVR 242
           +K     R+ A+  +++
Sbjct: 218 QKMEVDDRTQAVINSIK 234


>gi|170752129|ref|YP_001758389.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658651|gb|ACB27706.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 242

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W +EGKT  EI +++GI+   V+ ++ S   K  T  R+  +A A+R+ +
Sbjct: 181 LSPREREALQWAAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGL 240

Query: 246 V 246
           +
Sbjct: 241 I 241


>gi|329120079|ref|ZP_08248749.1| nitrate/nitrite response regulator protein NarL [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463610|gb|EGF09928.1| nitrate/nitrite response regulator protein NarL [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 225

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 170 ANMFKSY-----DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ANM +S       V   +  ELT RE+E L +++ G ++  IA  L ++ +TV  Y+ +I
Sbjct: 138 ANMVQSLIKPAKPVEENRLDELTARELEVLGYLAAGHSNKIIARSLDLAESTVKVYVQNI 197

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           +RK    +R  A  YAV++ +
Sbjct: 198 LRKLELTSRVQAAVYAVQHKV 218


>gi|302534781|ref|ZP_07287123.1| two-component system response regulator [Streptomyces sp. C]
 gi|302443676|gb|EFL15492.1| two-component system response regulator [Streptomyces sp. C]
          Length = 270

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 207 LTDRELEVLKLVATGMNNRDIAKQLFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 266

Query: 246 V 246
           +
Sbjct: 267 L 267


>gi|298246666|ref|ZP_06970471.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297549325|gb|EFH83191.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1067

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 153  IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            I+L  +  ++G+ +  QA + +S          L+ RE E L  ISEG+++ EIA  L I
Sbjct: 984  ILLCKQEQQMGVPSGEQAELVES----------LSERECEVLRHISEGRSNREIARQLVI 1033

Query: 213  SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +TV ++I +I  K   K+R+ A+  A R N++
Sbjct: 1034 ALSTVKSHIRAIYAKLGVKSRTQALIQARRLNLL 1067


>gi|86741939|ref|YP_482339.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86568801|gb|ABD12610.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 213

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E L  I+EG T+ +I   + +S  TV NY++SI+ K    +R+ A  YA++ 
Sbjct: 152 LSAREREILQHIAEGLTNRQIGTRIHLSEKTVKNYVSSILEKLGMTSRTQAAVYALKK 209


>gi|56421685|ref|YP_149003.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56381527|dbj|BAD77435.1| two-component response regulator (extracellular proteinase response
           regulator) [Geobacillus kaustophilus HTA426]
          Length = 224

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A++N 
Sbjct: 161 LTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNG 219


>gi|315646876|ref|ZP_07899991.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Paenibacillus vortex V453]
 gi|315277806|gb|EFU41130.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Paenibacillus vortex V453]
          Length = 100

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 172 MFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           M  S  +  G  +   T RE+E L  I EG +++EIA +L IS  TV  YI +I +K   
Sbjct: 20  MISSQSMGAGISEIHFTKRELELLVLIMEGSSNEEIAQMLMISTGTVKRYIHNIYQKLEV 79

Query: 231 KTRSGAIAYAVRNNIV 246
           K R  A+     N+++
Sbjct: 80  KNRVQAVKKIKENHLI 95


>gi|253573801|ref|ZP_04851144.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847329|gb|EES75334.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 215

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  +++G  + EIA +L IS  TV  + A IM K   K+R   + YA++  +
Sbjct: 153 LSTREVEILPLVAKGYGNKEIAEMLHISVKTVEAHKAKIMEKLNLKSRPELVEYAIKKKL 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|239816808|ref|YP_002945718.1| LuxR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803385|gb|ACS20452.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 161

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + + W+S GKT  EIA +L IS  TV+ ++  +  K   +TR+ A+  A+
Sbjct: 100 LTPREGDVMHWLSRGKTDAEIAALLEISPRTVHKHLEHVYVKLGVETRTAAVVRAL 155


>gi|298292643|ref|YP_003694582.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929154|gb|ADH89963.1| transcriptional regulator, LuxR family [Starkeya novella DSM 506]
          Length = 284

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 19/110 (17%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------------ELTGREVECLTW 196
           GR    DR  +  LL AY+A++ +SY     +                ELT R++E  +W
Sbjct: 157 GRAAFSDR--QRDLLEAYRAHVLRSYRQACDRTLASMTPTDRLRIAFPELTPRQLEVASW 214

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ GK++++IA IL +   T+  ++ +I  K       G +A AV  + V
Sbjct: 215 VARGKSNEDIATILDVGIETIKAHVKAIHAKIGA---DGRLAIAVMAHTV 261


>gi|291006472|ref|ZP_06564445.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE + L   + G+T+ EIA  LG++R+TV  Y+ + MRK   + R   IA A +
Sbjct: 147 DTGLTQREYDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNRIELIAKAAQ 206

Query: 243 NNIV 246
           + ++
Sbjct: 207 SGLL 210


>gi|289627087|ref|ZP_06460041.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646654|ref|ZP_06477997.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330869632|gb|EGH04341.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330888707|gb|EGH21368.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+  G    LT R+ E L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS A
Sbjct: 138 DLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRSAA 197

Query: 237 IA 238
            A
Sbjct: 198 AA 199


>gi|260220323|emb|CBA27745.1| hypothetical protein Csp_A03820 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 267

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L W++ GKT+ EI  IL IS  TV N++  + +K     R+ A+ 
Sbjct: 206 LTEREAEILKWVALGKTNPEIGSILEISAFTVKNHMQRVFKKLDVSNRAQAVG 258


>gi|148240680|ref|YP_001226067.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849219|emb|CAK24770.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 230

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 7/125 (5%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDVHWG--- 181
           NR  + T  +AR ++G+  L  +  +  R       L A  + + ++     D H     
Sbjct: 106 NRPSAETLKIAR-QLGVDALLDERSVEKRSGALIQALAALQEGSRYEDPRLQDEHQAPHT 164

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  L+GR++E L  ++EG ++  IA  L IS NTV ++++ IM +     R+ A++ A+
Sbjct: 165 SNKTLSGRQLEILALVAEGLSNRVIAQQLQISSNTVRDHLSEIMLRLDVNNRASAVSSAL 224

Query: 242 RNNIV 246
           R  ++
Sbjct: 225 RRGLM 229


>gi|255012345|ref|ZP_05284471.1| transcriptional regulator [Bacteroides sp. 2_1_7]
 gi|298374802|ref|ZP_06984760.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19]
 gi|298269170|gb|EFI10825.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19]
          Length = 193

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REV+ L  I +G T+ EIA  L IS NTV  +  +I  K   KT SG   YA+ N 
Sbjct: 125 DLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMNG 184

Query: 245 IV 246
           I+
Sbjct: 185 II 186


>gi|206563380|ref|YP_002234143.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039420|emb|CAR55386.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 215

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG ++  IA  LGI+  TV  ++ ++M K     R+ A+A A R  +
Sbjct: 151 LTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAVALAWREGL 210

Query: 246 V 246
           +
Sbjct: 211 M 211


>gi|118477693|ref|YP_894844.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416918|gb|ABK85337.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 221

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 161 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 219


>gi|298243753|ref|ZP_06967560.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297556807|gb|EFH90671.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 221

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A QA++F  ++V      E LT RE + L  +++G+++ +IA  L I  +TV  ++  I+
Sbjct: 126 APQASIFLLHEVREPNLPENLTEREADVLRLLAQGRSNKDIARHLHIVEDTVKTHVRHIL 185

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   ++R+ A  YA R N+V
Sbjct: 186 SKLGVQSRTQAALYATRLNLV 206


>gi|159898124|ref|YP_001544371.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891163|gb|ABX04243.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 159 LWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           ++E G  L +   A + K       +D EL+ RE++ L  +  G+++  IA+ L IS NT
Sbjct: 118 IYEGGAALQSGIAARVLKRLATEPAED-ELSQRELDVLQLLVRGESNKAIALSLNISENT 176

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++++ I  K   ++R+ A+A A++  +V
Sbjct: 177 IKSHVSHIFSKLDVRSRAEAVAVALQRGLV 206


>gi|257437613|ref|ZP_05613368.1| DNA-binding response regulator, LuxR family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199920|gb|EEU98204.1| DNA-binding response regulator, LuxR family [Faecalibacterium
           prausnitzii A2-165]
          Length = 210

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVRN 243
           +LT RE+E L  + EG   +EIA  LGIS  TV  +++S++ KT    R+  AIA   +N
Sbjct: 142 QLTPREIEVLRLVCEGLEYEEIAAELGISSRTVKRFVSSLLEKTGYSNRTRLAIAVTKKN 201

Query: 244 NIV 246
            I+
Sbjct: 202 FIL 204


>gi|75812491|ref|YP_320110.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705247|gb|ABA24921.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 223

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L+ ++ GKT+ EIA  L I+  TV  +I +I++K     R+ A+  A++  +
Sbjct: 160 LTGREQEILSLLAAGKTNQEIAHQLCIAPGTVRVHIHAILQKLEVSDRTQAVLVALQKQL 219

Query: 246 V 246
           +
Sbjct: 220 I 220


>gi|239941686|ref|ZP_04693623.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988145|ref|ZP_04708809.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445128|ref|ZP_06584518.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348075|gb|EFE74979.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 251

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 188 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 247

Query: 246 V 246
           +
Sbjct: 248 L 248


>gi|163848177|ref|YP_001636221.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526082|ref|YP_002570553.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163669466|gb|ABY35832.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449961|gb|ACM54227.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 236

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+  A++  
Sbjct: 166 LTSREIEILDCIARGLSNKEIASELSISSQTVKNHITSILAKLQVNDRTMAVIVAIKKG 224


>gi|311105770|ref|YP_003978623.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760459|gb|ADP15908.1| bacterial regulatory protein, LuxR family protein 7 [Achromobacter
           xylosoxidans A8]
          Length = 237

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L W ++GKTS +++ IL I+ +TV  +  + + K   + R+ A+A A 
Sbjct: 176 LTRRETEILKWAADGKTSSDVSEILAIAESTVRFHTKNAISKLGARNRTAAVARAA 231


>gi|229059933|ref|ZP_04197307.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228719346|gb|EEL70950.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 211

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|170768176|ref|ZP_02902629.1| transcriptional regulator CsgD [Escherichia albertii TW07627]
 gi|170122942|gb|EDS91873.1| transcriptional regulator CsgD [Escherichia albertii TW07627]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|152966411|ref|YP_001362195.1| response regulator receiver protein [Kineococcus radiotolerans
           SRS30216]
 gi|151360928|gb|ABS03931.1| response regulator receiver protein [Kineococcus radiotolerans
           SRS30216]
          Length = 151

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  ++EG +  +IA  LG S NT+  ++A+I RK   ++ + A+  A R
Sbjct: 71  LTAREAETLQLVAEGLSGAQIAERLGRSANTIAQHLATIRRKYGVRSSTAAVEAARR 127


>gi|114769502|ref|ZP_01447128.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550419|gb|EAU53300.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
          Length = 222

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGIS 213
           D L E  +  A    +F   DV   +D   F LT RE   L ++++G ++ E+A  + IS
Sbjct: 116 DELLETAITVASGKMVFPFMDVRELQDDPLFMLTKREKIILQFLADGSSNKELAESMKIS 175

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAY 239
            NTV  +++++  K   K RS AI++
Sbjct: 176 INTVKFHLSNLYEKLGVKNRSQAISF 201


>gi|293409411|ref|ZP_06652987.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469879|gb|EFF12363.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|238789261|ref|ZP_04633048.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC
           33641]
 gi|238722593|gb|EEQ14246.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC
           33641]
          Length = 245

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           RE E L W S GKT  EI++ILGI R+TV  +I +++RK        AI   +
Sbjct: 184 RENEILYWASVGKTYSEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGI 236


>gi|46275753|dbj|BAD15091.1| probable transcriptional regulator [Pseudomonas azotoformans]
          Length = 202

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL W ++G T+ EIA  L  S   V  ++AS M K   K R  A+  A   
Sbjct: 138 IHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHY 197

Query: 244 NIV 246
            ++
Sbjct: 198 RLL 200


>gi|332704010|ref|ZP_08424098.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554159|gb|EGJ51203.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 210

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D H      L+ RE + L  I++GKT  EIA  L +S  T++ Y A I+ K   K  +  
Sbjct: 140 DSHKSSHEFLSDREYQVLCMIAQGKTVSEIADTLKLSVKTISTYRARILEKMKMKNNAEL 199

Query: 237 IAYAVRNNIV 246
             YA++N +V
Sbjct: 200 TYYAIQNGLV 209


>gi|256839247|ref|ZP_05544757.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262382307|ref|ZP_06075444.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|301308485|ref|ZP_07214439.1| putative transcriptional regulator, LuxR family [Bacteroides sp.
           20_3]
 gi|256740166|gb|EEU53490.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262295185|gb|EEY83116.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|300833955|gb|EFK64571.1| putative transcriptional regulator, LuxR family [Bacteroides sp.
           20_3]
          Length = 193

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REV+ L  I +G T+ EIA  L IS NTV  +  +I  K   KT SG   YA+ N 
Sbjct: 125 DLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMNG 184

Query: 245 IV 246
           I+
Sbjct: 185 II 186


>gi|296129573|ref|YP_003636823.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
 gi|296021388|gb|ADG74624.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
          Length = 137

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+  L  ++EG+T+  I   LG+S  TV +++A I RK  T  R+  +A A+RN 
Sbjct: 75  DLSARELSVLARVAEGRTNRLIGEELGLSALTVKSHLARISRKLGTGDRAELVAIAIRNR 134

Query: 245 IV 246
           ++
Sbjct: 135 MI 136


>gi|156740169|ref|YP_001430298.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM
           13941]
 gi|156231497|gb|ABU56280.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii
           DSM 13941]
          Length = 454

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  ++ G T+ +IA  L IS NTV  ++ +I  K    +R+ A  YAVR+ 
Sbjct: 8   QLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAVRSG 67

Query: 245 IV 246
           IV
Sbjct: 68  IV 69


>gi|300788090|ref|YP_003768381.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
 gi|299797604|gb|ADJ47979.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
          Length = 771

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +L+GRE E    +S+G+T+ +IA  LG+S  TV  Y+A I +K A  +R+
Sbjct: 692 QLSGREREISRLVSDGRTNQQIARTLGLSHKTVETYLARIFKKLALCSRA 741


>gi|295396928|ref|ZP_06807052.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
 gi|294974862|gb|EFG50565.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
          Length = 210

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+ GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +N 
Sbjct: 148 DLTTREREVLQLIAAGKSNQEIADELFITLKTVKTHVSNILSKLGVEDRTQATIYAFQNQ 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|293414338|ref|ZP_06656987.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185]
 gi|291434396|gb|EFF07369.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|126658803|ref|ZP_01729947.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126619901|gb|EAZ90626.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 224

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  ++ G ++ EI   L +S  T+  Y++S++RKT T  R+  + +A+ +
Sbjct: 161 LDLTRRESEVLDLLTTGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFALDH 220

Query: 244 NIV 246
           ++V
Sbjct: 221 HLV 223


>gi|320449580|ref|YP_004201676.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01]
 gi|320149749|gb|ADW21127.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01]
          Length = 217

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 17/122 (13%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           D     L   + R+  G +LL  +  GRII             ++A    S  +H     
Sbjct: 105 DTDASELIGAIRRVHAGEVLLDAELAGRII-----------QDFRAKKESSLPLHA---- 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE++ L  +++G T+ EIA  L +S  TV N ++ I +K     R+ A  YA+R  
Sbjct: 150 ELSEREIQILKLVAQGYTNLEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREG 209

Query: 245 IV 246
           + 
Sbjct: 210 LA 211


>gi|317057055|ref|YP_004105522.1| LuxR family two component transcriptional regulator [Ruminococcus
           albus 7]
 gi|315449324|gb|ADU22888.1| two component transcriptional regulator, LuxR family [Ruminococcus
           albus 7]
          Length = 211

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 35/50 (70%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ELT RE+E L  ++ G T+ ++A  LGIS NTV +++ S++ KT  ++R+
Sbjct: 144 ELTERELEILRIVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRT 193


>gi|320010465|gb|ADW05315.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 250

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 187 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246

Query: 246 V 246
           +
Sbjct: 247 L 247


>gi|218660891|ref|ZP_03516821.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 65

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E +  ++ GKT+ EI  ILGIS  TVN +I++   K      +  +A A+RN I
Sbjct: 4   VTPREREIIGCMAAGKTAAEIGAILGISPITVNTHISNAKAKLGVFKETALVAAALRNGI 63

Query: 246 V 246
           +
Sbjct: 64  I 64


>gi|82544494|ref|YP_408441.1| DNA-binding transcriptional regulator CsgD [Shigella boydii Sb227]
 gi|157160562|ref|YP_001457880.1| DNA-binding transcriptional regulator CsgD [Escherichia coli HS]
 gi|170020563|ref|YP_001725517.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ATCC
           8739]
 gi|188492464|ref|ZP_02999734.1| transcriptional regulator CsgD [Escherichia coli 53638]
 gi|300918637|ref|ZP_07135219.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|312971173|ref|ZP_07785351.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1827-70]
 gi|81245905|gb|ABB66613.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Shigella boydii Sb227]
 gi|157066242|gb|ABV05497.1| transcriptional regulator CsgD [Escherichia coli HS]
 gi|169755491|gb|ACA78190.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739]
 gi|188487663|gb|EDU62766.1| transcriptional regulator CsgD [Escherichia coli 53638]
 gi|300414180|gb|EFJ97490.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|309701312|emb|CBJ00613.1| probable csgab operon transcriptional regulator [Escherichia coli
           ETEC H10407]
 gi|310336375|gb|EFQ01561.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1827-70]
 gi|323937781|gb|EGB34045.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
 gi|332094032|gb|EGI99084.1| putative csgAB operon transcriptional regulatory protein [Shigella
           boydii 3594-74]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|291453746|ref|ZP_06593136.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356695|gb|EFE83597.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 267

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 204 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 263

Query: 246 V 246
           +
Sbjct: 264 L 264


>gi|229161240|ref|ZP_04289227.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228622336|gb|EEK79175.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 211

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKH 208


>gi|294636980|ref|ZP_06715302.1| putative csgAB operon transcriptional regulatory protein
           [Edwardsiella tarda ATCC 23685]
 gi|291089808|gb|EFE22369.1| putative csgAB operon transcriptional regulatory protein
           [Edwardsiella tarda ATCC 23685]
          Length = 214

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+E +  + +G ++ +I+ +L IS NTV  +I +I +K A K R+ A+ +A  N
Sbjct: 154 LTLRELEVMKAMQQGASNQDISQMLYISENTVRTHIYNIFKKIAVKNRTQAVKWADAN 211


>gi|221633170|ref|YP_002522395.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum
           DSM 5159]
 gi|221156902|gb|ACM06029.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum
           DSM 5159]
          Length = 261

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE++ L  +++G ++ EIA  L I+  TV N++ SI+RK   + R   I  AVR
Sbjct: 187 DAVLTVRELQVLDCVAQGMSNKEIAEALFITEQTVKNHMTSILRKLGAQDRVDVILAAVR 246

Query: 243 NN 244
             
Sbjct: 247 QG 248


>gi|119714219|ref|YP_919361.1| metal-dependent phosphohydrolase [Nocardioides sp. JS614]
 gi|119526128|gb|ABL79498.1| metal-dependent phosphohydrolase, HD sub domain [Nocardioides sp.
           JS614]
          Length = 516

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  +++G ++ E+A  L ISR T  +++  +  K  T TR+ A  YA+ +++
Sbjct: 454 LSDREVEVLRLVAKGLSNQEVAQTLVISRRTAEHHVQHVYAKIGTSTRAAAALYAMEHDL 513

Query: 246 V 246
           +
Sbjct: 514 L 514


>gi|152968160|ref|YP_001363944.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151362677|gb|ABS05680.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 179 HWGKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             G   EL G   REVE L  I+ G ++ EIA  L IS  TV  Y++ I+ K   + R  
Sbjct: 153 RGGAGAELAGLTPREVEVLGLIARGLSNAEIAAELVISHETVKTYVSRILAKLGLRDRVQ 212

Query: 236 AIAYAVRNNIV 246
           A+  A R  +V
Sbjct: 213 AVVLAYRTGLV 223


>gi|329935958|ref|ZP_08285759.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304565|gb|EGG48442.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 254

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 191 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 250

Query: 246 V 246
           +
Sbjct: 251 L 251


>gi|311070407|ref|YP_003975330.1| two-component response regulator YxjM [Bacillus atrophaeus 1942]
 gi|310870924|gb|ADP34399.1| two-component response regulator (YxjM) [Bacillus atrophaeus 1942]
          Length = 218

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE+E L  ++ G  ++EIA  L +S +TV  ++  I++K   + R+ A+ +A+RN I
Sbjct: 157 FTKRELEVLQQMAYGLRNEEIADKLFVSESTVKTHVHRILQKCEAQDRTQAVVFAIRNGI 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|300859114|ref|YP_003784097.1| LuxR family transcriptional regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686568|gb|ADK29490.1| LuxR-family transcription regulator [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 279

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           VH  +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 210 VHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 269

Query: 238 AYAVR 242
             A R
Sbjct: 270 NAARR 274


>gi|150010404|ref|YP_001305147.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|149938828|gb|ABR45525.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
          Length = 193

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REV+ L  I +G T+ EIA  L IS NTV  +  +I  K   KT SG   YA+ N 
Sbjct: 125 DLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMNG 184

Query: 245 IV 246
           I+
Sbjct: 185 II 186


>gi|297200099|ref|ZP_06917496.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297147573|gb|EDY61231.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 269

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 206 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 265

Query: 246 V 246
           +
Sbjct: 266 L 266


>gi|312197189|ref|YP_004017250.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228525|gb|ADP81380.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 285

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE+E + +I+EG ++ E A  L +   TV +Y+ SIM+K     R+ A+  A R 
Sbjct: 222 FGLTPRELEVVRFIAEGHSNAEAAKHLTVKPETVKSYLRSIMQKLGVHNRTAAVNVARRA 281

Query: 244 NIV 246
            ++
Sbjct: 282 GLL 284


>gi|302538489|ref|ZP_07290831.1| two component system response regulator [Streptomyces sp. C]
 gi|302447384|gb|EFL19200.1| two component system response regulator [Streptomyces sp. C]
          Length = 226

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE + L  + +G ++ EIA  LGI   TV  ++ +I+ KT + +R  A   A R  +
Sbjct: 165 LTGRERDVLAALGDGLSNQEIAARLGIGTGTVKTHVGAILDKTGSASRVQAALLAHRTGL 224


>gi|225872928|ref|YP_002754385.1| DNA-binding response regulator, LuxR family [Acidobacterium
           capsulatum ATCC 51196]
 gi|225794168|gb|ACO34258.1| DNA-binding response regulator, LuxR family [Acidobacterium
           capsulatum ATCC 51196]
          Length = 213

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L+ IS+GK++ EIA +L ++ NTV  ++  I+ K     R+ A+  A++  
Sbjct: 150 KLSERELEVLSLISKGKSNKEIAGLLFVTDNTVKMHVKKILSKLQANDRTQAVVIAIQRG 209

Query: 245 IV 246
           ++
Sbjct: 210 LL 211


>gi|193064557|ref|ZP_03045637.1| transcriptional regulator CsgD [Escherichia coli E22]
 gi|192927809|gb|EDV82423.1| transcriptional regulator CsgD [Escherichia coli E22]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|157827467|ref|YP_001496531.1| putative transcriptional regulator [Rickettsia bellii OSU 85-389]
 gi|157802771|gb|ABV79494.1| Putative transcriptional regulator [Rickettsia bellii OSU 85-389]
          Length = 288

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V  GK  +L+ RE EC+ ++S G +  EI  IL +S  TV +++ SI +KT    +S  
Sbjct: 211 EVKTGKYNKLSYRETECIYYLSLGNSMKEIGSILNLSPRTVEHHLNSIKQKTGLLYKSQL 270

Query: 237 IAYAVRN 243
           +   ++N
Sbjct: 271 VKEFIKN 277


>gi|148654644|ref|YP_001274849.1| response regulator receiver protein [Roseiflexus sp. RS-1]
 gi|148566754|gb|ABQ88899.1| response regulator receiver protein [Roseiflexus sp. RS-1]
          Length = 471

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  ++ G T+ +IA  L IS NTV  ++ +I  K    +R+ A  YAVRN 
Sbjct: 8   QLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAVRNG 67

Query: 245 IV 246
           ++
Sbjct: 68  LL 69


>gi|56413870|ref|YP_150945.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168244733|ref|ZP_02669665.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168264076|ref|ZP_02686049.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168467083|ref|ZP_02700925.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194444624|ref|YP_002040395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194450147|ref|YP_002045140.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197362793|ref|YP_002142430.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56128127|gb|AAV77633.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|154269337|gb|ABS72185.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden]
 gi|194403287|gb|ACF63509.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194408451|gb|ACF68670.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195630363|gb|EDX48989.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197094270|emb|CAR59776.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205336437|gb|EDZ23201.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205347328|gb|EDZ33959.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|119714221|ref|YP_919363.1| LuxR family transcriptional regulator [Nocardioides sp. JS614]
 gi|119526130|gb|ABL79500.1| transcriptional regulator, LuxR family [Nocardioides sp. JS614]
          Length = 545

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 40/59 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + LT +++G ++ EIA  L +SR TV ++++SI+ K A ++R+ A A+A R  
Sbjct: 486 LTRREHDVLTLLADGLSNPEIAQRLYLSRKTVAHHVSSILTKLALRSRAEAAAFATRTR 544


>gi|311067417|ref|YP_003972340.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310867934|gb|ADP31409.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 215

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 44/75 (58%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +M   ++    K ++LT RE + L  I+ GK++ EIA  L IS  TV  ++++++ K   
Sbjct: 135 HMRTQHEPEKEKYYQLTRREKDVLMEIASGKSNKEIAASLFISEKTVKTHVSNLLAKLDV 194

Query: 231 KTRSGAIAYAVRNNI 245
             R+ A  +AV++++
Sbjct: 195 ADRTQAALFAVKHHL 209


>gi|304394580|ref|ZP_07376499.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130]
 gi|303293241|gb|EFL87622.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130]
          Length = 221

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 42/62 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  +++G+++ EIA +LG+S  TV+++ ++IMRK    + +  +  A+R  
Sbjct: 154 ELTSREMQVLQSLAKGRSNREIAEVLGVSPKTVDSHRSNIMRKFGVHSIATLLVEAMRQG 213

Query: 245 IV 246
           ++
Sbjct: 214 LI 215


>gi|288556565|ref|YP_003428500.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288547725|gb|ADC51608.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 210

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  +T RE+  +  + EG ++ EI+  L +S  T+ N+I++I+ K + + R+    YA+R
Sbjct: 147 DPAITPRELAIMKLVGEGLSNKEISEELSLSVGTIKNHISAILDKLSLRDRTQLAIYAIR 206

Query: 243 NNIV 246
           +N+V
Sbjct: 207 HNVV 210


>gi|282865219|ref|ZP_06274272.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560142|gb|EFB65691.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 250

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 187 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246

Query: 246 V 246
           +
Sbjct: 247 L 247


>gi|251795693|ref|YP_003010424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
 gi|247543319|gb|ACT00338.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
          Length = 866

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR+R+ E G  A+Y A M  +  V      +LTGRE E L  I EG +++EI   L +S
Sbjct: 781 LLRERISEGGWTASY-ARMKDNLTV------KLTGREREVLRKIGEGLSNEEIGGQLFLS 833

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
             TV  Y  +I  K   K R  AI+ A
Sbjct: 834 TGTVKKYAYNIYEKLQVKNRVQAISRA 860


>gi|16764498|ref|NP_460113.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62179660|ref|YP_216077.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161614644|ref|YP_001588609.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167553080|ref|ZP_02346830.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993996|ref|ZP_02575088.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168234058|ref|ZP_02659116.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237217|ref|ZP_02662275.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168822574|ref|ZP_02834574.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194469443|ref|ZP_03075427.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194737293|ref|YP_002114139.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249466|ref|YP_002146903.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262382|ref|ZP_03162456.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198243879|ref|YP_002215996.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200389724|ref|ZP_03216335.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204930806|ref|ZP_03221679.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|207857350|ref|YP_002244001.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224584353|ref|YP_002638151.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238911038|ref|ZP_04654875.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|6014730|sp|O54294|CSGD_SALTY RecName: Full=Probable csgAB operon transcriptional regulatory
           protein
 gi|2739237|emb|CAA05315.1| CsgD protein [Salmonella typhimurium]
 gi|16419657|gb|AAL20072.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62127293|gb|AAX64996.1| putative transcriptional regulator (LuxR/UhpA family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364008|gb|ABX67776.1| hypothetical protein SPAB_02394 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455807|gb|EDX44646.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194712795|gb|ACF92016.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197213169|gb|ACH50566.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240637|gb|EDY23257.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197289893|gb|EDY29254.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938395|gb|ACH75728.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602169|gb|EDZ00715.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320265|gb|EDZ05469.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205322437|gb|EDZ10276.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328037|gb|EDZ14801.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205331948|gb|EDZ18712.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205341044|gb|EDZ27808.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|206709153|emb|CAR33486.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224468880|gb|ACN46710.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246354|emb|CBG24163.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992909|gb|ACY87794.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157683|emb|CBW17175.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912129|dbj|BAJ36103.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320086418|emb|CBY96191.1| Transcriptional regulatory protein uhpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223757|gb|EFX48820.1| Transcriptional regulator CsgD for 2nd curli operon [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322616512|gb|EFY13421.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619764|gb|EFY16639.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622541|gb|EFY19386.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629692|gb|EFY26467.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632588|gb|EFY29334.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636917|gb|EFY33620.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641545|gb|EFY38183.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644846|gb|EFY41380.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649699|gb|EFY46129.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653990|gb|EFY50313.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658522|gb|EFY54784.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663380|gb|EFY59582.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670114|gb|EFY66254.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674821|gb|EFY70912.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676708|gb|EFY72775.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682630|gb|EFY78649.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686312|gb|EFY82294.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322714130|gb|EFZ05701.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323129411|gb|ADX16841.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323195731|gb|EFZ80907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199879|gb|EFZ84968.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203139|gb|EFZ88169.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209142|gb|EFZ94079.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209647|gb|EFZ94576.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217898|gb|EGA02613.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222185|gb|EGA06569.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224956|gb|EGA09214.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229700|gb|EGA13823.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323232925|gb|EGA17021.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240660|gb|EGA24702.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242973|gb|EGA26994.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247665|gb|EGA31610.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252666|gb|EGA36504.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255707|gb|EGA39459.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261744|gb|EGA45316.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266904|gb|EGA50389.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269946|gb|EGA53395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326623745|gb|EGE30090.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628199|gb|EGE34542.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332988033|gb|AEF07016.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|16330324|ref|NP_441052.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1652813|dbj|BAA17732.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 226

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I EGK++ EIA  L +S NT+  ++  IM K +   R  A   A+R+ +
Sbjct: 166 LSEREIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGL 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|297531388|ref|YP_003672663.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297254640|gb|ADI28086.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
          Length = 224

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A++N 
Sbjct: 161 LTRRECEVLQLLADGKSNRAIGGALYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNG 219


>gi|296111001|ref|YP_003621382.1| Response regulator (CheY-like receiver domain and
           HTH-typeDNA-binding domain) [Leuconostoc kimchii IMSNU
           11154]
 gi|295832532|gb|ADG40413.1| Response regulator (CheY-like receiver domain and
           HTH-typeDNA-binding domain) [Leuconostoc kimchii IMSNU
           11154]
          Length = 211

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAV 208
           +G  IL++++ EI        +  + YD    ++ F L   EVE L+ IS+G     IA+
Sbjct: 121 QGNTILQNKITEI-------ISNDELYDTQNNQNIFNLNPTEVEILSAISQGSKIKNIAL 173

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  T+ N++  +  K    +   AIA AVRN+I+
Sbjct: 174 KLHLSERTIKNHLTVVYDKMNVSSGVEAIALAVRNHII 211


>gi|144228246|gb|ABO93630.1| PagR [Pantoea agglomerans pv. gypsophilae]
 gi|163676290|gb|ABY40374.1| PabR [Pantoea agglomerans pv. betae]
          Length = 230

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV   + ++M+K      + A+
Sbjct: 161 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFLMGNVMKKLGVNNATHAV 219


>gi|319940792|ref|ZP_08015131.1| NarL protein [Sutterella wadsworthensis 3_1_45B]
 gi|319805674|gb|EFW02455.1| NarL protein [Sutterella wadsworthensis 3_1_45B]
          Length = 220

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L W++ G ++ EIA  L ++ +TV  ++ SI+RK    +R  A  YA+ + I
Sbjct: 157 LTRRERQTLAWLARGVSNKEIARALNLAESTVKVHVQSILRKLNLSSRVQAAIYAIEHKI 216


>gi|312891076|ref|ZP_07750599.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296384|gb|EFQ73530.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 214

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+ RE E L  ISEG T++EIA  L  SR TV  +  +++ KT  K     I +A++N
Sbjct: 151 IELSEREKEVLDLISEGYTNNEIADKLFTSRRTVEGHRQNLIEKTGVKNTPSLIRFALQN 210

Query: 244 NIV 246
            ++
Sbjct: 211 GLI 213


>gi|302205480|gb|ADL09822.1| Response regulator [Corynebacterium pseudotuberculosis C231]
 gi|308275716|gb|ADO25615.1| Response regulator [Corynebacterium pseudotuberculosis I19]
          Length = 234

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 179 HWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           H  +D    LT RE+E L  I+ GK++ EIA  L IS  TV  ++  ++ KT ++ R  A
Sbjct: 157 HINEDLIEPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHA 216

Query: 237 IAYAVRNNIV 246
           + +A +  +V
Sbjct: 217 VLFAFKRGVV 226


>gi|148557613|ref|YP_001265195.1| putative PAS/PAC sensor protein [Sphingomonas wittichii RW1]
 gi|148502803|gb|ABQ71057.1| putative PAS/PAC sensor protein [Sphingomonas wittichii RW1]
          Length = 222

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE ECL W+S GKT+ E A ILG+S+ TV  ++ + + +     +  A   A+R  +
Sbjct: 162 LRSRERECLVWLSLGKTAWETAAILGLSQRTVEYHLNNAVARLGAANKVHAAVIAIRAQL 221

Query: 246 V 246
           +
Sbjct: 222 I 222


>gi|150395471|ref|YP_001325938.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150026986|gb|ABR59103.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 247

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+ CL    +G  S+EIA  +G+S +TVN Y+ +   K  +  R  AIA A+R
Sbjct: 186 LSDREISCLQMAGDGHISEEIAEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIR 242


>gi|327441352|dbj|BAK17717.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 224

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++G+++  I   L IS  TV N+++SI++K     R+ A+  A++N
Sbjct: 161 LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKN 218


>gi|326801202|ref|YP_004319021.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551966|gb|ADZ80351.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D ++  RE+E L   ++G T+ EIA  L  S+ TV  Y  S++ KT  +  +  I YA +
Sbjct: 152 DLQINNREMEVLALTADGFTNQEIAERLFTSKRTVEGYRQSLIEKTGVRNTAALIKYAYQ 211

Query: 243 NNIV 246
           N I+
Sbjct: 212 NGIL 215


>gi|294498256|ref|YP_003561956.1| two-component response regulator DesR [Bacillus megaterium QM
           B1551]
 gi|295703606|ref|YP_003596681.1| two-component response regulator DesR [Bacillus megaterium DSM 319]
 gi|294348193|gb|ADE68522.1| two-component response regulator DesR [Bacillus megaterium QM
           B1551]
 gi|294801265|gb|ADF38331.1| two-component response regulator DesR [Bacillus megaterium DSM 319]
          Length = 200

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L  +++GK + EIA  L I   TV NYI++I+ K   K R  AI
Sbjct: 139 LTAREKEVLALVADGKNTKEIADELSIKTGTVRNYISTILDKLEVKNRIEAI 190


>gi|218700457|ref|YP_002408086.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI39]
 gi|218370443|emb|CAR18250.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli IAI39]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|196232039|ref|ZP_03130894.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223761|gb|EDY18276.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 220

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + LT RE E L  ++EGK + EI V LG+S  TV  ++  I+ K   K+R+ A
Sbjct: 156 YGLTRRETEVLHLLAEGKANAEIGVELGLSPRTVEKHVEHILDKLGVKSRTAA 208


>gi|15801157|ref|NP_287174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 EDL933]
 gi|15830671|ref|NP_309444.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. Sakai]
 gi|26247175|ref|NP_753215.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           CFT073]
 gi|30062564|ref|NP_836735.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a
           str. 2457T]
 gi|56479799|ref|NP_706950.2| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a
           str. 301]
 gi|91210188|ref|YP_540174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UTI89]
 gi|110641216|ref|YP_668946.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 536]
 gi|110805049|ref|YP_688569.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 5
           str. 8401]
 gi|117623229|ref|YP_852142.1| DNA-binding transcriptional regulator CsgD [Escherichia coli APEC
           O1]
 gi|157155649|ref|YP_001462271.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           E24377A]
 gi|168747192|ref|ZP_02772214.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754516|ref|ZP_02779523.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760623|ref|ZP_02785630.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767694|ref|ZP_02792701.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773880|ref|ZP_02798887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783565|ref|ZP_02808572.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4076]
 gi|168799314|ref|ZP_02824321.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC508]
 gi|191166943|ref|ZP_03028767.1| transcriptional regulator CsgD [Escherichia coli B7A]
 gi|193069453|ref|ZP_03050407.1| transcriptional regulator CsgD [Escherichia coli E110019]
 gi|194432391|ref|ZP_03064678.1| transcriptional regulator CsgD [Shigella dysenteriae 1012]
 gi|195935427|ref|ZP_03080809.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809483|ref|ZP_03251820.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815293|ref|ZP_03256472.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822315|ref|ZP_03262634.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396459|ref|YP_002269887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209918293|ref|YP_002292377.1| DNA-binding transcriptional regulator CsgD [Escherichia coli SE11]
 gi|215486249|ref|YP_002328680.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217328252|ref|ZP_03444334.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218553618|ref|YP_002386531.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI1]
 gi|218557921|ref|YP_002390834.1| DNA-binding transcriptional regulator CsgD [Escherichia coli S88]
 gi|218688993|ref|YP_002397205.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ED1a]
 gi|218694575|ref|YP_002402242.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 55989]
 gi|218704448|ref|YP_002411967.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           UMN026]
 gi|227886606|ref|ZP_04004411.1| LuxR family protein [Escherichia coli 83972]
 gi|237706978|ref|ZP_04537459.1| transcriptional regulator for 2nd curli operon [Escherichia sp.
           3_2_53FAA]
 gi|254792423|ref|YP_003077260.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. TW14359]
 gi|256018703|ref|ZP_05432568.1| DNA-binding transcriptional regulator CsgD [Shigella sp. D9]
 gi|260854523|ref|YP_003228414.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O26:H11 str. 11368]
 gi|260867403|ref|YP_003233805.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O111:H- str. 11128]
 gi|261227055|ref|ZP_05941336.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256289|ref|ZP_05948822.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282059|ref|YP_003498877.1| CsgD [Escherichia coli O55:H7 str. CB9615]
 gi|293404327|ref|ZP_06648321.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1412]
 gi|293433333|ref|ZP_06661761.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088]
 gi|298380106|ref|ZP_06989711.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1302]
 gi|300816738|ref|ZP_07096958.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300821183|ref|ZP_07101332.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300899554|ref|ZP_07117793.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300902427|ref|ZP_07120409.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300922561|ref|ZP_07138662.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300935178|ref|ZP_07150204.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300974342|ref|ZP_07172554.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|300982659|ref|ZP_07176243.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|301023209|ref|ZP_07187008.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|301051178|ref|ZP_07198008.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|301305026|ref|ZP_07211128.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|301328594|ref|ZP_07221655.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|306814112|ref|ZP_07448285.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101]
 gi|307310181|ref|ZP_07589831.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|309794973|ref|ZP_07689393.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|331652090|ref|ZP_08353109.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M718]
 gi|331657094|ref|ZP_08358056.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA206]
 gi|331662440|ref|ZP_08363363.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA143]
 gi|331667434|ref|ZP_08368298.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA271]
 gi|331672560|ref|ZP_08373349.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA280]
 gi|331676827|ref|ZP_08377523.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H591]
 gi|331682538|ref|ZP_08383157.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H299]
 gi|332279774|ref|ZP_08392187.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9]
 gi|12514569|gb|AAG55786.1|AE005314_14 putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. EDL933]
 gi|26107576|gb|AAN79775.1|AE016759_49 Probable csgAB operon transcriptional Regulatory protein
           [Escherichia coli CFT073]
 gi|13360877|dbj|BAB34840.1| transcriptional regulator for 2nd curli operon [Escherichia coli
           O157:H7 str. Sakai]
 gi|30040810|gb|AAP16541.1| probable csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 2457T]
 gi|56383350|gb|AAN42657.2| probable csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 301]
 gi|91071762|gb|ABE06643.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli UTI89]
 gi|110342808|gb|ABG69045.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli 536]
 gi|110614597|gb|ABF03264.1| Probable csgAB operon transcriptional Regulatory protein [Shigella
           flexneri 5 str. 8401]
 gi|115512353|gb|ABJ00428.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli APEC O1]
 gi|157077679|gb|ABV17387.1| transcriptional regulator CsgD [Escherichia coli E24377A]
 gi|171986605|gb|ACB59284.1| CsgD [Escherichia coli]
 gi|171986613|gb|ACB59291.1| CsgD [Escherichia coli]
 gi|171986621|gb|ACB59298.1| CsgD [Escherichia coli]
 gi|171986629|gb|ACB59305.1| CsgD [Escherichia coli]
 gi|187770420|gb|EDU34264.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018009|gb|EDU56131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999071|gb|EDU68057.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358200|gb|EDU76619.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363208|gb|EDU81627.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368715|gb|EDU87131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4501]
 gi|189378335|gb|EDU96751.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC508]
 gi|190903055|gb|EDV62780.1| transcriptional regulator CsgD [Escherichia coli B7A]
 gi|192957201|gb|EDV87650.1| transcriptional regulator CsgD [Escherichia coli E110019]
 gi|194419278|gb|EDX35360.1| transcriptional regulator CsgD [Shigella dysenteriae 1012]
 gi|208729284|gb|EDZ78885.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731941|gb|EDZ80629.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737800|gb|EDZ85483.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157859|gb|ACI35292.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209773728|gb|ACI85176.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773730|gb|ACI85177.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773732|gb|ACI85178.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773734|gb|ACI85179.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773736|gb|ACI85180.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209911552|dbj|BAG76626.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|215264321|emb|CAS08678.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli O127:H6 str. E2348/69]
 gi|217318679|gb|EEC27105.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218351307|emb|CAU97012.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli 55989]
 gi|218360386|emb|CAQ97938.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli IAI1]
 gi|218364690|emb|CAR02380.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli S88]
 gi|218426557|emb|CAR07385.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli ED1a]
 gi|218431545|emb|CAR12423.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli UMN026]
 gi|222032794|emb|CAP75533.1| csgAB operon transcriptional regulatory [Escherichia coli LF82]
 gi|226898188|gb|EEH84447.1| transcriptional regulator for 2nd curli operon [Escherichia sp.
           3_2_53FAA]
 gi|227836810|gb|EEJ47276.1| LuxR family protein [Escherichia coli 83972]
 gi|254591823|gb|ACT71184.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. TW14359]
 gi|257753172|dbj|BAI24674.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O26:H11 str. 11368]
 gi|257763759|dbj|BAI35254.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O111:H- str. 11128]
 gi|281178149|dbj|BAI54479.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|281600449|gb|ADA73433.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2002017]
 gi|284920864|emb|CBG33927.1| probable csgab operon transcriptional regulator [Escherichia coli
           042]
 gi|290761932|gb|ADD55893.1| CsgD [Escherichia coli O55:H7 str. CB9615]
 gi|291324152|gb|EFE63574.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088]
 gi|291428913|gb|EFF01938.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1412]
 gi|294494087|gb|ADE92843.1| transcriptional regulator CsgD [Escherichia coli IHE3034]
 gi|298279804|gb|EFI21312.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1302]
 gi|300297199|gb|EFJ53584.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|300307124|gb|EFJ61644.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|300356825|gb|EFJ72695.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300397133|gb|EFJ80671.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|300405459|gb|EFJ88997.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300410585|gb|EFJ94123.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|300421107|gb|EFK04418.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300459572|gb|EFK23065.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300526482|gb|EFK47551.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300530512|gb|EFK51574.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300839744|gb|EFK67504.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|300844986|gb|EFK72746.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|305852749|gb|EFM53197.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101]
 gi|306909899|gb|EFN40393.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|307553043|gb|ADN45818.1| csgAB operon transcriptional regulatory protein [Escherichia coli
           ABU 83972]
 gi|307627490|gb|ADN71794.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UM146]
 gi|308121277|gb|EFO58539.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|312945603|gb|ADR26430.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313650706|gb|EFS15107.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 2457T]
 gi|315060319|gb|ADT74646.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli W]
 gi|315253837|gb|EFU33805.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1]
 gi|315287407|gb|EFU46818.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3]
 gi|315291086|gb|EFU50449.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1]
 gi|315296668|gb|EFU55963.1| transcriptional regulator, LuxR family [Escherichia coli MS 16-3]
 gi|320189720|gb|EFW64376.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. EC1212]
 gi|320200932|gb|EFW75516.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli EC4100B]
 gi|320637492|gb|EFX07292.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. G5101]
 gi|320643053|gb|EFX12254.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H- str. 493-89]
 gi|320648510|gb|EFX17165.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H- str. H 2687]
 gi|320653825|gb|EFX21899.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659305|gb|EFX26874.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664439|gb|EFX31590.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323175733|gb|EFZ61327.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1180]
 gi|323190548|gb|EFZ75820.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli RN587/1]
 gi|323379120|gb|ADX51388.1| transcriptional regulator, LuxR family [Escherichia coli KO11]
 gi|323947348|gb|EGB43354.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           H120]
 gi|323953272|gb|EGB49138.1| luxR family protein regulatory protein [Escherichia coli H252]
 gi|323958052|gb|EGB53762.1| luxR family protein regulatory protein [Escherichia coli H263]
 gi|323966982|gb|EGB62408.1| luxR family protein regulatory protein [Escherichia coli M863]
 gi|323976586|gb|EGB71674.1| luxR family protein regulatory protein [Escherichia coli TW10509]
 gi|324007878|gb|EGB77097.1| transcriptional regulator, LuxR family [Escherichia coli MS 57-2]
 gi|324013311|gb|EGB82530.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1]
 gi|324017459|gb|EGB86678.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3]
 gi|324117387|gb|EGC11294.1| luxR family protein regulatory protein [Escherichia coli E1167]
 gi|326339260|gb|EGD63074.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. 1125]
 gi|326344780|gb|EGD68528.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. 1044]
 gi|327253435|gb|EGE65073.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli STEC_7v]
 gi|331050368|gb|EGI22426.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M718]
 gi|331055342|gb|EGI27351.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA206]
 gi|331060862|gb|EGI32826.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA143]
 gi|331065019|gb|EGI36914.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA271]
 gi|331070203|gb|EGI41569.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA280]
 gi|331075516|gb|EGI46814.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H591]
 gi|331080169|gb|EGI51348.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H299]
 gi|332088801|gb|EGI93913.1| putative csgAB operon transcriptional regulatory protein [Shigella
           boydii 5216-82]
 gi|332092876|gb|EGI97944.1| putative csgAB operon transcriptional regulatory protein [Shigella
           dysenteriae 155-74]
 gi|332102126|gb|EGJ05472.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9]
 gi|332758809|gb|EGJ89125.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 4343-70]
 gi|332759950|gb|EGJ90251.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2747-71]
 gi|332762241|gb|EGJ92509.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-671]
 gi|332767834|gb|EGJ98025.1| bacterial regulatory s, luxR family protein [Shigella flexneri
           2930-71]
 gi|333005819|gb|EGK25336.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri VA-6]
 gi|333019711|gb|EGK38984.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-304]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|302206808|gb|ADL11150.1| Hypothetical protein CpC231_1689 [Corynebacterium
           pseudotuberculosis C231]
 gi|308277060|gb|ADO26959.1| Hypothetical protein CpI19_1705 [Corynebacterium pseudotuberculosis
           I19]
          Length = 279

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           VH  +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 210 VHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 269

Query: 238 AYAVR 242
             A R
Sbjct: 270 NAARR 274


>gi|229181601|ref|ZP_04308926.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228601797|gb|EEK59293.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 189

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E +    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVMLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 A 240
           A
Sbjct: 183 A 183


>gi|146276004|ref|YP_001166164.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
 gi|145322695|gb|ABP64638.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
          Length = 248

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT REV+CL W + GKT  EI +IL +S +TV  ++ +   K     R+ +I  A 
Sbjct: 182 KLTRREVQCLRWAAAGKTDGEIGIILDLSHSTVRFHLRNAAEKLGATGRAQSIQLAA 238


>gi|194428408|ref|ZP_03060948.1| transcriptional regulator CsgD [Escherichia coli B171]
 gi|260843280|ref|YP_003221058.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O103:H2 str. 12009]
 gi|194413460|gb|EDX29742.1| transcriptional regulator CsgD [Escherichia coli B171]
 gi|257758427|dbj|BAI29924.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O103:H2 str. 12009]
 gi|323163719|gb|EFZ49538.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli E128010]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|116073216|ref|ZP_01470478.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9916]
 gi|116068521|gb|EAU74273.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9916]
          Length = 227

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +S G ++ EI+  L IS  TV +++++I+ K   K R+ A+  A+R  
Sbjct: 167 DLTDREMEVLKVLSSGMSNKEISESLCISSETVKSHVSTIIGKMGVKDRTQAVIKAIRAG 226

Query: 245 I 245
           I
Sbjct: 227 I 227


>gi|294629677|ref|ZP_06708237.1| nitrate/nitrite response regulator [Streptomyces sp. e14]
 gi|292833010|gb|EFF91359.1| nitrate/nitrite response regulator [Streptomyces sp. e14]
          Length = 267

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 204 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 263

Query: 246 V 246
           +
Sbjct: 264 L 264


>gi|217959776|ref|YP_002338328.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|229138969|ref|ZP_04267547.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|217064042|gb|ACJ78292.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|228644509|gb|EEL00763.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207


>gi|158315847|ref|YP_001508355.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111252|gb|ABW13449.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +R+ A  Y ++ +
Sbjct: 156 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQS 214


>gi|325922351|ref|ZP_08184126.1| Transcriptional regulator, LuxR family protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325547170|gb|EGD18249.1| Transcriptional regulator, LuxR family protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 506

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELTGRE + L  ++EG    EIA  L ++ NTV N++A++  K    +R  AI +A
Sbjct: 434 ELTGRERDVLGLLAEGLADKEIAQQLSVAPNTVRNHVAALYSKIDVHSRGEAIVWA 489


>gi|289704562|ref|ZP_06500996.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558750|gb|EFD52007.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 202

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE++ L    EG +   IA  L ++  TV NY++S M+KT T TR  A  +A R
Sbjct: 139 DCPLTDRELDALRATGEGYSVARIAQQLHLAEGTVRNYLSSAMQKTQTSTRHDAARFARR 198

Query: 243 NN 244
           + 
Sbjct: 199 HE 200


>gi|290961885|ref|YP_003493067.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260651411|emb|CBG74533.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 223

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT I++G  + EIA  L +S NTV  +I  +  KT ++ R+ A  YA R+ +
Sbjct: 163 LTRREAEILTLIAQGLNNAEIADRLFLSGNTVKTHINRVFAKTRSRDRAAATLYARRHGL 222

Query: 246 V 246
            
Sbjct: 223 A 223


>gi|205353119|ref|YP_002226920.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272900|emb|CAR37830.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|116054260|ref|YP_788704.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254243626|ref|ZP_04936948.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192]
 gi|115589481|gb|ABJ15496.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126197004|gb|EAZ61067.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192]
          Length = 496

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 126 MDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           ++ + C L    D++  R   M L      +++D  W    L    AN+ ++     G +
Sbjct: 363 LNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAE 422

Query: 184 F-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +LT RE E    I +G    EIA  LG++ NTV N++A+I  K    +R  AI +A
Sbjct: 423 LADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWA 480


>gi|298246329|ref|ZP_06970135.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553810|gb|EFH87675.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 233

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  +++G  + EIA  L IS  T   +++SIM K     R+ A+A A +  
Sbjct: 170 ELTERELEVLRLLAQGMPNKEIASHLVISERTAKFHVSSIMSKLGATNRTEAVALAAQRG 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|218294966|ref|ZP_03495820.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
 gi|218244874|gb|EED11398.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
          Length = 217

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE++ L  +++G T+ EIA  L +S  TV N ++ I +K     R+ A  YA+R  
Sbjct: 150 ELSEREIQILKLVAQGYTNLEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREG 209

Query: 245 IV 246
           + 
Sbjct: 210 LA 211


>gi|145224867|ref|YP_001135545.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK]
 gi|145217353|gb|ABP46757.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK]
          Length = 519

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVI 209
           LRDR+ E G L     +   S   H  +        LT RE+E L  ++ G ++ EIA  
Sbjct: 421 LRDRVRE-GHLDELAVDAVLSAAGHAARRVSARPGGLTPREIEVLCLVARGASNKEIAAT 479

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LGIS  T  N++     K     R GA  +A+ + ++
Sbjct: 480 LGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516


>gi|126652487|ref|ZP_01724659.1| DegU [Bacillus sp. B14905]
 gi|169826725|ref|YP_001696883.1| transcriptional regulatory protein degU [Lysinibacillus sphaericus
           C3-41]
 gi|126590758|gb|EAZ84873.1| DegU [Bacillus sp. B14905]
 gi|168991213|gb|ACA38753.1| Transcriptional regulatory protein degU (Protease production
           enhancer protein) [Lysinibacillus sphaericus C3-41]
          Length = 224

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++G+++  I   L IS  TV N+++SI++K     R+ A+  A++N
Sbjct: 161 LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKN 218


>gi|91205195|ref|YP_537550.1| putative transcriptional regulator [Rickettsia bellii RML369-C]
 gi|91068739|gb|ABE04461.1| Putative transcriptional regulator [Rickettsia bellii RML369-C]
          Length = 285

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V  GK  +L+ RE EC+ ++S G +  EI  IL +S  TV +++ SI +KT    +S  
Sbjct: 208 EVKTGKYNKLSYRETECIYYLSLGNSMKEIGSILNLSPRTVEHHLNSIKQKTGLLYKSQL 267

Query: 237 IAYAVRN 243
           +   ++N
Sbjct: 268 VKEFIKN 274


>gi|333009595|gb|EGK29047.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-272]
          Length = 216

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|311899603|dbj|BAJ32011.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L   +EG  ++EIA +L ++ +TV  ++  I+ K   + RS A+A A R+ +
Sbjct: 165 LTVREREVLRLAAEGHPNEEIAALLHLAESTVKTHVKRILGKLGARDRSQAVAAAYRHGL 224

Query: 246 V 246
           +
Sbjct: 225 M 225


>gi|302331370|gb|ADL21564.1| LuxR family transcriptional regulator [Corynebacterium
           pseudotuberculosis 1002]
          Length = 279

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           VH  +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 210 VHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 269

Query: 238 AYAVR 242
             A R
Sbjct: 270 NAARR 274


>gi|88807485|ref|ZP_01122997.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           WH 7805]
 gi|88788699|gb|EAR19854.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           WH 7805]
          Length = 227

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  +S G T+ EIA  L +S  TV  +++SI+ K   K R+ A+  A++  
Sbjct: 167 ELSEREIEVLKVLSCGMTNKEIADTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAG 226

Query: 245 I 245
           I
Sbjct: 227 I 227


>gi|150391892|ref|YP_001321941.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951754|gb|ABR50282.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 208

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A+   +M K        D +LT RE E + W+ EG ++ EI+  L +S  TV NY+  +
Sbjct: 128 IASVLTSMLKEEKEKHHLDLQLTEREHEIIKWVGEGLSNREISAALYLSEGTVRNYVTQL 187

Query: 225 MRKTATKTRS 234
           + K   + R+
Sbjct: 188 LEKLNVRDRT 197


>gi|269836276|ref|YP_003318504.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785539|gb|ACZ37682.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 223

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ REVE L  ++   ++ EIA  L IS +TV N++ +I+ K    +R  A AYAV 
Sbjct: 152 DGGLSPREVEVLELVALRLSNKEIAARLSISEHTVKNHLKNILAKLQLSSRRQAAAYAVA 211

Query: 243 NNIV 246
           + ++
Sbjct: 212 HGLI 215


>gi|228985356|ref|ZP_04145515.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774309|gb|EEM22716.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 211

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 151 LTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|226228720|ref|YP_002762826.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091911|dbj|BAH40356.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 210

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++G ++ +IA+ LG + +T+  ++ +I++K  T  R+ A+  A+R  I
Sbjct: 147 LTARELEVLELMAQGLSNPDIAIRLGRAESTMKVHVRNILQKLGTDDRTAAVTTALRRGI 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|169628613|ref|YP_001702262.1| putative two-component system response regulator LuxR
           [Mycobacterium abscessus ATCC 19977]
 gi|169240580|emb|CAM61608.1| Putative two-component system response regulator LuxR
           [Mycobacterium abscessus]
          Length = 218

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  I+ G T+ EIA  L IS  TV ++I  I  K   + R+ AI YA  + 
Sbjct: 154 KLTARELDVLALIASGATNSEIAEQLVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHG 213

Query: 245 IV 246
           IV
Sbjct: 214 IV 215


>gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 227

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ ++   L +S  TV  Y++S++RKT+T  R+  + +A+++ +
Sbjct: 166 LTHREQEVLELLTHGLSNADMGHQLHLSPRTVEKYVSSLLRKTSTSNRAELVRFAMKHGL 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|315445195|ref|YP_004078074.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1]
 gi|315263498|gb|ADU00240.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1]
          Length = 519

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVI 209
           LRDR+ E G L     +   S   H  +        LT RE+E L  ++ G ++ EIA  
Sbjct: 421 LRDRVRE-GHLDELAVDAVLSAAGHAARRVSARPGGLTPREIEVLCLVARGASNKEIAAT 479

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LGIS  T  N++     K     R GA  +A+ + ++
Sbjct: 480 LGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516


>gi|311031947|ref|ZP_07710037.1| two-component response regulator DegU [Bacillus sp. m3-13]
          Length = 239

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 176 LTRRECEVLQLLADGKSNKAIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 233


>gi|300788854|ref|YP_003769145.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798368|gb|ADJ48743.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 210

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   ++G+T+ EIA   G++RNTV  Y+ S + K   + R  AI  A
Sbjct: 150 LTRREYEVLRLAAQGQTNPEIAESTGLARNTVKTYLQSALHKLGARNRVEAIGKA 204


>gi|256394564|ref|YP_003116128.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256360790|gb|ACU74287.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G+ +L D +  I L AA          V      +LT RE E LT I+ GK++ EIA  L
Sbjct: 116 GQSVLDDGVTAILLAAA----------VEVPASADLTPREAEVLTLIARGKSNTEIAGEL 165

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +S  TV  +I ++  K   + R+ A+ YA+R  +
Sbjct: 166 FVSAATVKTHINNLFAKIGVRDRAQAVRYALRRGL 200


>gi|238854471|ref|ZP_04644810.1| Two-component response regulator [Lactobacillus jensenii 269-3]
 gi|260665481|ref|ZP_05866328.1| two-component system response regulator [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934541|ref|ZP_06339793.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1]
 gi|313471834|ref|ZP_07812326.1| Two-component response regulator [Lactobacillus jensenii 1153]
 gi|238832898|gb|EEQ25196.1| Two-component response regulator [Lactobacillus jensenii 269-3]
 gi|239530121|gb|EEQ69122.1| Two-component response regulator [Lactobacillus jensenii 1153]
 gi|260560749|gb|EEX26726.1| two-component system response regulator [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301379|gb|EFA93671.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE+E L  + +  T+ E+A  L +S  TV NYI+SI+ KT T +R  A+  A
Sbjct: 138 DNPLTKRELEILKMLEQVATTKELAQRLFLSEGTVRNYISSILSKTGTASRLEALNLA 195


>gi|284045808|ref|YP_003396148.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950029|gb|ADB52773.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ELT RE++ L  ++ G+T+ EIA  L IS  TV +++ +++RK     R+ A+A
Sbjct: 242 ELTARELQVLELLATGRTNAEIATALMISEGTVKHHVKNLLRKLNASNRADAVA 295


>gi|283786604|ref|YP_003366469.1| quorum sensing transcriptional regulator CroR [Citrobacter
           rodentium ICC168]
 gi|282950058|emb|CBG89690.1| quorum sensing transcriptional regulator CroR [Citrobacter
           rodentium ICC168]
          Length = 230

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           VH  K+  L+ RE + L W+S GKT  E+++IL I+  TV  ++++ M+K        A+
Sbjct: 160 VHQKKNVFLSPRERQILKWVSAGKTYAEVSLILSITERTVKFHMSNAMKKLGVNNARHAV 219


>gi|163790348|ref|ZP_02184780.1| DNA-binding response regulator, LuxR family protein [Carnobacterium
           sp. AT7]
 gi|159874419|gb|EDP68491.1| DNA-binding response regulator, LuxR family protein [Carnobacterium
           sp. AT7]
          Length = 210

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           KG IIL     E  +     A + K   VH   D +LT RE E L  IS+G ++ EIA  
Sbjct: 120 KGEIIL-----EPEVTGKMMARLTKK-QVHQLHD-DLTNREQEILMLISQGNSNQEIADA 172

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+  TV  ++++I+ K   + R+ A  YA +++++
Sbjct: 173 LFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHHLI 209


>gi|146338047|ref|YP_001203095.1| putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like [Bradyrhizobium sp. ORS278]
 gi|146190853|emb|CAL74858.1| putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like [Bradyrhizobium sp. ORS278]
          Length = 242

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E E L+W + GKT+ E A ILG+S   V  ++    RK ATK ++  +A A+ N 
Sbjct: 184 EAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLATKNKTATVATALVNG 238


>gi|41410415|ref|NP_963251.1| hypothetical protein MAP4317c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41399249|gb|AAS06867.1| hypothetical protein MAP_4317c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 218

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + LT I +G ++ EIA  L IS  TV ++I  I  K   + R+ AI YA  N 
Sbjct: 154 ELTTRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNG 213

Query: 245 IV 246
           IV
Sbjct: 214 IV 215


>gi|323156843|gb|EFZ42977.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli EPECa14]
          Length = 203

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 111 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 170

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 171 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 200


>gi|238791898|ref|ZP_04635535.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
 gi|238729002|gb|EEQ20519.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
          Length = 245

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE E L W S GKT  E+++ILGI R+TV  +I +++RK        AI   + 
Sbjct: 185 RENEILYWASVGKTYSEVSIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIE 238


>gi|228925153|ref|ZP_04088263.1| Response regulator receiver [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228834492|gb|EEM80021.1| Response regulator receiver [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 537

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK++ LT RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A
Sbjct: 471 GKEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 530


>gi|182438321|ref|YP_001826040.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778972|ref|ZP_08238237.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466837|dbj|BAG21357.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326659305|gb|EGE44151.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 251

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 188 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 247

Query: 246 V 246
           +
Sbjct: 248 L 248


>gi|113953858|ref|YP_731807.1| LuxR family transcriptional regulator [Synechococcus sp. CC9311]
 gi|113881209|gb|ABI46167.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CC9311]
          Length = 83

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+
Sbjct: 3   ISLSSREIEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAM 60


>gi|104782747|ref|YP_609245.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95111734|emb|CAK16458.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 216

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 181 GKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           G D+   LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + 
Sbjct: 145 GNDYRQHLTARQLEILRLIVRGKSTREIAGGLGLSIKTVETHRSQIMKRLQIYDVAGLVL 204

Query: 239 YAVRNNIV 246
           +AVR  I+
Sbjct: 205 FAVRERII 212


>gi|21311407|gb|AAM46700.1|AF448800_2 AhlR [Erwinia chrysanthemi]
          Length = 124

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 8/98 (8%)

Query: 156 RDRLWEIGLLAAYQA----NMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAV 208
           RD+L ++ L++A++     +   S + H  K  E    + RE E L W S GKT  EIA+
Sbjct: 18  RDKL-QMLLISAHEKLTSLHREMSRNRHNSKSQEADIFSQRENEILYWASMGKTYHEIAL 76

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ILGI+ +TV  +I ++++K        AI   V  N++
Sbjct: 77  ILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 114


>gi|56963198|ref|YP_174929.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909441|dbj|BAD63968.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 210

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE   LT I EG  + EIA  LG+S  TV N  + I  K A + R+    YA+R
Sbjct: 147 DPSLTPRERAILTCIGEGLNNKEIAERLGLSVGTVKNQTSHIFDKLALRDRTQLAIYAIR 206

Query: 243 NNIV 246
           + +V
Sbjct: 207 HRLV 210


>gi|228958760|ref|ZP_04120472.1| Response regulator receiver [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800899|gb|EEM47804.1| Response regulator receiver [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 537

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG 181
           G D  Y   + D   +   + L++  G +I  D   R+WE       +  +F+S     G
Sbjct: 419 GADG-YVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWE----ENKETGLFESRSD--G 471

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ LT RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A
Sbjct: 472 IEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 530


>gi|116625456|ref|YP_827612.1| LuxR family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228618|gb|ABJ87327.1| transcriptional regulator, LuxR family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 178

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG  +  IA  LGIS +TV  ++A I+ K    TR+ A+   +R  +
Sbjct: 116 LTPRELEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNAGTRTEAVTLGIRKGL 175

Query: 246 V 246
           +
Sbjct: 176 I 176


>gi|327438509|dbj|BAK14874.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 204

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE + L  ++EGKT+ EIA  L +S  TV NYI+ I+ K     R  AIA
Sbjct: 140 LTERESQVLELVAEGKTTKEIAAELYLSAGTVRNYISVILDKLGVGNRIEAIA 192


>gi|294637446|ref|ZP_06715736.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC
           23685]
 gi|291089387|gb|EFE21948.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC
           23685]
          Length = 239

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIA+ILGI   TV  +I ++++K        AI   V 
Sbjct: 174 FSARENEILYWASMGKTYQEIALILGIKSGTVKFHIGNVVKKLGVLNAKHAIRLGVE 230


>gi|296120645|ref|YP_003628423.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296012985|gb|ADG66224.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 220

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + L  +  G T DEIA  L +S +T++ ++ +I +K     R+GA+A A+R+ 
Sbjct: 159 DLSLREQDVLKQVVRGLTKDEIARALKLSPHTIDTHLRNIYQKLHVHNRAGAVAIAIRDG 218

Query: 245 IV 246
           +V
Sbjct: 219 LV 220


>gi|108805731|ref|YP_645668.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108766974|gb|ABG05856.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 781

 Score = 44.7 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L  + EG T  ++A  L +S  TVN ++ SI+RK   ++R+ A+  A
Sbjct: 720 LTPRELEVLRLVGEGMTDAQVAGRLFVSTRTVNAHLRSILRKLGVRSRAAAVRLA 774


>gi|15595730|ref|NP_249224.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107099520|ref|ZP_01363438.1| hypothetical protein PaerPA_01000532 [Pseudomonas aeruginosa PACS2]
 gi|218889274|ref|YP_002438138.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|296387037|ref|ZP_06876536.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313111834|ref|ZP_07797627.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
 gi|9946400|gb|AAG03922.1|AE004490_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218769497|emb|CAW25257.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310884129|gb|EFQ42723.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
          Length = 496

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 126 MDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           ++ + C L    D++  R   M L      +++D  W    L    AN+ ++     G +
Sbjct: 363 LNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAE 422

Query: 184 F-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +LT RE E    I +G    EIA  LG++ NTV N++A+I  K    +R  AI +A
Sbjct: 423 LADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWA 480


>gi|299536017|ref|ZP_07049336.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis
           ZC1]
 gi|298728622|gb|EFI69178.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis
           ZC1]
          Length = 224

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++G+++  I   L IS  TV N+++SI++K     R+ A+  A++N
Sbjct: 161 LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKN 218


>gi|288923802|ref|ZP_06417891.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288344850|gb|EFC79290.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 289

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D   G+   LT RE E +  ++EG    EIA +LGIS  TV+ ++  I RK   ++R+  
Sbjct: 196 DRAAGRLAALTPREREVVDQLAEGIGDREIARVLGISPRTVHKHLEQIYRKLGLQSRTAV 255

Query: 237 IAYAVRNNI 245
           +A  VR  I
Sbjct: 256 VAV-VRGTI 263


>gi|309812489|ref|ZP_07706242.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
 gi|308433544|gb|EFP57423.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
          Length = 253

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G++  LT RE E L  I++G ++++IA    +S N+V +YI +  RK    +RS A+ + 
Sbjct: 173 GREEGLTPREAEVLALITQGLSNNDIAAQTHLSINSVKSYIRTGYRKIGVTSRSQAVLWG 232

Query: 241 VRNN 244
           VR+ 
Sbjct: 233 VRHG 236


>gi|293603128|ref|ZP_06685562.1| autoinducer-binding transcriptional regulator BmaR5 [Achromobacter
           piechaudii ATCC 43553]
 gi|292818522|gb|EFF77569.1| autoinducer-binding transcriptional regulator BmaR5 [Achromobacter
           piechaudii ATCC 43553]
          Length = 120

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ R+  CL W + GKTS E + ILG+S +TVN ++ +   K   + R  A+  A+R  +
Sbjct: 55  LSDRQAACLYWSAAGKTSWETSRILGVSESTVNFHLRNACAKLGVRGRRAAVVSALRLGL 114

Query: 246 V 246
           +
Sbjct: 115 L 115


>gi|282897990|ref|ZP_06305985.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281197134|gb|EFA72035.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 229

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ RE E L  ++ G ++ EI   L +S  TV  Y++S++RKT++  R+  + +A++++I
Sbjct: 168 ISTREREVLELLTHGLSNAEIGSKLYLSPRTVEKYVSSLLRKTSSNNRAELVRFAIKHDI 227

Query: 246 V 246
           V
Sbjct: 228 V 228


>gi|47565618|ref|ZP_00236658.1| MW1789 [Bacillus cereus G9241]
 gi|47557254|gb|EAL15582.1| MW1789 [Bacillus cereus G9241]
          Length = 211

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|194476794|ref|YP_002048973.1| possible transcriptional regulator [Paulinella chromatophora]
 gi|171191801|gb|ACB42763.1| possible transcriptional regulator [Paulinella chromatophora]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            L+GREVE +  ++ G T+ EIA  L IS+ TV+N+I +I  KT    R   + +A+
Sbjct: 13  NLSGREVELIELLATGLTNQEIATHLMISKRTVDNHICNIFTKTGVNNRIKLLNWAI 69


>gi|299821874|ref|ZP_07053762.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817539|gb|EFI84775.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 241

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++ 
Sbjct: 178 LTHRECEVLQLLTDGKSNRSIGEALFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 236


>gi|241766529|ref|ZP_04764392.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241363243|gb|EER58807.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 239

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE   L W+SEG+++ EIA ++G S  TV  +   + RK   + ++  + YAV
Sbjct: 149 LTPREASVLQWVSEGRSNKEIAALMGTSVRTVETHRLHLRRKLRIEGQAALMKYAV 204


>gi|229091257|ref|ZP_04222475.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228692023|gb|EEL45764.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 149 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207


>gi|120402652|ref|YP_952481.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955470|gb|ABM12475.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 219

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  I+EG ++ EIA  LGIS  TV+ + A+++ K   + R     YA+R  +
Sbjct: 157 VTSREEEVLKLIAEGYSTREIAGTLGISAKTVDRHRANLLAKLGLRDRLALTRYAIRVGL 216

Query: 246 V 246
           +
Sbjct: 217 I 217


>gi|262370436|ref|ZP_06063762.1| two component transcriptional regulator [Acinetobacter johnsonii
           SH046]
 gi|262314778|gb|EEY95819.1| two component transcriptional regulator [Acinetobacter johnsonii
           SH046]
          Length = 228

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G+D+ +LT RE E L  +++G ++ EIA  L +SR TV ++I  I RK +   R+ A++ 
Sbjct: 162 GQDYDQLTNRETEILNLVAQGLSNREIAEQLFVSRYTVESHIKHIYRKLSVSKRTKAVST 221

Query: 240 A 240
           A
Sbjct: 222 A 222


>gi|220921758|ref|YP_002497059.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219946364|gb|ACL56756.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W ++GK+  EI   +GIS +    ++ ++ RK  T +R+ A+A  +R  I
Sbjct: 183 LSPRERESLQWAADGKSDWEIGEAMGISEHGAIRHLRAVRRKLGTTSRAHAVALGLRLGI 242

Query: 246 V 246
           +
Sbjct: 243 I 243


>gi|254237247|ref|ZP_04930570.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719]
 gi|126169178|gb|EAZ54689.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719]
          Length = 496

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 126 MDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           ++ + C L    D++  R   M L      +++D  W    L    AN+ ++     G +
Sbjct: 363 LNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAE 422

Query: 184 F-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +LT RE E    I +G    EIA  LG++ NTV N++A+I  K    +R  AI +A
Sbjct: 423 LADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWA 480


>gi|330898318|gb|EGH29737.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 220

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR 
Sbjct: 154 FRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|329296611|ref|ZP_08253947.1| LuxR family transcriptional regulator [Plautia stali symbiont]
          Length = 89

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + + RE+E L W +EGKTS EI +IL IS +TVN +  ++ ++     ++    YA
Sbjct: 28  DFSQRELEILKWTAEGKTSAEICLILAISEHTVNFHQKNMQKRFNVSNKTQIACYA 83


>gi|320335412|ref|YP_004172123.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319756701|gb|ADV68458.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE E L  I+ G ++  IA  LGIS +TV N+I+S++ K   + R+ A
Sbjct: 151 LTPREHEVLALIARGDSNKRIAAQLGISDSTVKNHISSVLAKLQVRNRTEA 201


>gi|170697219|ref|ZP_02888313.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137839|gb|EDT06073.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 237

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDF------ELTGREVECL 194
           IGL+ +   G  I    L E G   ++ ANM   +  +H    F      ELT RE E L
Sbjct: 125 IGLVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHLLARFVPEYAVELTARERETL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRK-TATKTRSGAIAYAV 241
            W + GKT  EI  I+ +   TV  ++ + MRK  AT     A+  A+
Sbjct: 185 QWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAM 232


>gi|16129003|ref|NP_415558.1| DNA-binding transcriptional activator for csgBA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107885|ref|AP_001665.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli str. K-12 substr. W3110]
 gi|170080692|ref|YP_001730012.1| DNA-binding transcriptional regulator of adhesion determinants
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238900295|ref|YP_002926091.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BW2952]
 gi|256023262|ref|ZP_05437127.1| DNA-binding transcriptional regulator CsgD [Escherichia sp.
           4_1_40B]
 gi|300950131|ref|ZP_07164076.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300954426|ref|ZP_07166878.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|301644945|ref|ZP_07244913.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|307137675|ref|ZP_07497031.1| DNA-binding transcriptional regulator CsgD [Escherichia coli H736]
 gi|331641579|ref|ZP_08342714.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H736]
 gi|1706166|sp|P52106|CSGD_ECOLI RecName: Full=CsgBAC operon transcriptional regulatory protein
 gi|1147562|emb|CAA62280.1| putative regulatory protein [Escherichia coli K-12]
 gi|1787277|gb|AAC74124.1| DNA-binding transcriptional activator for csgBA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062613|dbj|BAA35830.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli str. K12 substr. W3110]
 gi|169888527|gb|ACB02234.1| DNA-binding transcriptional regulator of adhesion determinants
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238860897|gb|ACR62895.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BW2952]
 gi|260449819|gb|ACX40241.1| transcriptional regulator, LuxR family [Escherichia coli DH1]
 gi|300318576|gb|EFJ68360.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|300450478|gb|EFK14098.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|301076735|gb|EFK91541.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|323942508|gb|EGB38675.1| luxR family protein regulatory protein [Escherichia coli E482]
 gi|331038377|gb|EGI10597.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H736]
          Length = 216

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|302530222|ref|ZP_07282564.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302439117|gb|EFL10933.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 200

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE++ L    EG +  +IA  L ++  TV NY+++ M+KT T+TR  A  YA
Sbjct: 137 DCPLTVREIDVLRATREGYSVADIATRLHLAAGTVRNYLSNAMQKTQTRTRHEAARYA 194


>gi|261406817|ref|YP_003243058.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283280|gb|ACX65251.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 225

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 181 GKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           GKD     LT RE E L  ++ GK + EI+ IL IS  T   +I  IM+K     R+ A+
Sbjct: 156 GKDRLLGALTERETEVLQLLAYGKRNHEISAILCISEGTTKTHIHHIMQKLGALDRTQAV 215

Query: 238 AYAVRNNIV 246
             A+R  +V
Sbjct: 216 VTAIRMKLV 224


>gi|291295648|ref|YP_003507046.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470607|gb|ADD28026.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 200

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           W ++  LT RE   L    EG+TS EIA  LG+S  TV NY++  + K   + R
Sbjct: 134 WSEEDPLTDRERRVLRLAGEGRTSAEIAAELGLSEGTVRNYLSEAISKLGAQNR 187


>gi|172036050|ref|YP_001802551.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171697504|gb|ACB50485.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 224

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  ++ G ++ EI   L +S  T+  Y++S++RKT T  R+  + +A+ +
Sbjct: 161 LDLTRRESEVLDLLTMGLSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFALDH 220

Query: 244 NIV 246
           ++V
Sbjct: 221 HLV 223


>gi|38234459|ref|NP_940226.1| putative transcriptional regulator [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200722|emb|CAE50418.1| Putative transcriptional regulator [Corynebacterium diphtheriae]
          Length = 281

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           VH  +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 212 VHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 271

Query: 238 AYAVR 242
             A R
Sbjct: 272 NAARR 276


>gi|23098290|ref|NP_691756.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22776515|dbj|BAC12791.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 207

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE + L  I++G  +D+IA+ L IS  TV N++ +I+RK     R+ A+  A R
Sbjct: 147 LTDREWDILIEIAKGNNNDQIALNLEISDKTVKNHVTTILRKLDVNDRTNAMLLAFR 203


>gi|302035963|ref|YP_003796285.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300604027|emb|CBK40359.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 218

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ +E   L  I++GKT+ EIA  LG+S  TV NY+A++  K     RS A A+ ++
Sbjct: 159 LSPQERRLLPLIAQGKTNKEIAAELGLSDKTVKNYLANVYSKLHLSRRSQAAAFYLK 215


>gi|239978741|ref|ZP_04701265.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291450632|ref|ZP_06590022.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353581|gb|EFE80483.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 164 LLAAYQANMFKSYDVHW---GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           LL    A    S D H    G+   LT RE E L  I++G+++ EIA  L +S  TV  +
Sbjct: 136 LLQPEVAGALLSQDEHGQGQGRGGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTH 195

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
           +++I+ K     R+ A  +AVR+ +
Sbjct: 196 VSNILMKLDLADRTQAALWAVRHGM 220


>gi|20804002|emb|CAD31579.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mesorhizobium loti R7A]
          Length = 241

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL W ++GK++ EI  ILGI   T   ++ +  +K   +T++ A+
Sbjct: 179 LTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230


>gi|297204313|ref|ZP_06921710.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297148636|gb|EFH29052.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 203

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  LT RE+  L+  +EG +  EIA  L +S  TV NY+A+I RKT  + R  AI
Sbjct: 140 EMPLTRRELSVLSLAAEGASIAEIAGDLCLSHGTVRNYMAAITRKTGARNRIDAI 194


>gi|126659693|ref|ZP_01730822.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp.
           CCY0110]
 gi|126619038|gb|EAZ89778.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp.
           CCY0110]
          Length = 90

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 40/57 (70%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+GRE++ +  +S G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   + +A++
Sbjct: 12  LSGREMQIVDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELVRWALQ 68


>gi|115359785|ref|YP_776923.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285073|gb|ABI90589.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 229

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L W++EGK++ +I+ I+ ++ + V ++I SIM+K    TR  A+  A R  +
Sbjct: 169 LSTRELEILKWVAEGKSTWDISRIVSLTEHGVLHHIRSIMKKFDVPTRRQAVLMASRFGL 228

Query: 246 V 246
           +
Sbjct: 229 L 229


>gi|298487656|ref|ZP_07005697.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157748|gb|EFH98827.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 220

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIAV LG+S  T+  + + +M++      +G + + VR 
Sbjct: 154 YHLTARQLEILRLIVRGKSTREIAVGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|298248552|ref|ZP_06972357.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551211|gb|EFH85077.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 226

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE E L+ ++ G+ + EI   LGI+R TV +Y+ S+  K    +R+ A+  A+ 
Sbjct: 156 EVQLTEREQEVLSALAAGERNKEIGARLGITRRTVESYLNSLYAKLNVDSRAAAVMVAIE 215

Query: 243 NNIV 246
             ++
Sbjct: 216 RGLL 219


>gi|289625340|ref|ZP_06458294.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289647488|ref|ZP_06478831.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330867747|gb|EGH02456.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 220

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIAV LG+S  T+  + + +M++      +G + + VR 
Sbjct: 154 YHLTARQLEILRLIVRGKSTREIAVGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|228939396|ref|ZP_04101986.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972275|ref|ZP_04132888.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978889|ref|ZP_04139256.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228780846|gb|EEM29057.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228787459|gb|EEM35425.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820291|gb|EEM66326.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|222109223|ref|YP_002551488.1| two-component transcriptional regulator LuxR family [Agrobacterium
           vitis S4]
 gi|221738497|gb|ACM39362.1| two-component transcriptional regulator LuxR family [Agrobacterium
           vitis S4]
          Length = 240

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W+S GKT  EI  IL ++  +V   +A I      K R   ++ A+R
Sbjct: 174 DHRLTDREKEILQWVSRGKTDWEIGTILRMTEGSVTQRLARIRDTLGVKNRPQTVSQAIR 233

Query: 243 NNIV 246
             ++
Sbjct: 234 LGLI 237


>gi|254417388|ref|ZP_05031130.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420]
 gi|196175823|gb|EDX70845.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420]
          Length = 94

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 40/61 (65%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I++KT T  R   + +A+
Sbjct: 8   KSVSLSDRELQIVDLVAAGLTNQEIAQDLEISKRTVDNHISNILQKTHTDNRVALVRWAL 67

Query: 242 R 242
           +
Sbjct: 68  Q 68


>gi|29828980|ref|NP_823614.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606085|dbj|BAC70149.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG ++ EIA  L +S  TV  +I ++  KT  K R+ A+ YA    +
Sbjct: 162 LTAREAEVLVLIAEGLSNHEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGL 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|315645472|ref|ZP_07898596.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315278950|gb|EFU42260.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 200

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + + G++  LT RE E L+ I++GK + EIA  L I+  TV NYI+ I+ K     R  A
Sbjct: 130 EAYSGEENPLTEREKEVLSLIADGKNTKEIATQLFITTGTVRNYISVILDKLGVSNRIEA 189

Query: 237 I 237
           I
Sbjct: 190 I 190


>gi|326939967|gb|AEA15863.1| two-component response regulator yhcZ [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|289523038|ref|ZP_06439892.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503581|gb|EFD24745.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 274

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + LT RE E L W+S+G ++  IA I+ +S  TV N+++ I++K     R+ A  +A
Sbjct: 197 YHLTPREKEVLYWLSQGFSNQNIAKIMFLSEKTVKNHVSRILKKLDFPDRTQAAVFA 253


>gi|258653054|ref|YP_003202210.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258556279|gb|ACV79221.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 905

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTG E   +  ++ GK + +IA +LGISR TV +++++  RK    +R      A+R+ I
Sbjct: 844 LTGTERRVVGLVASGKANSDIAALLGISRRTVESHVSAAYRKLGVNSRVAMARIALRHGI 903


>gi|288940789|ref|YP_003443029.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288896161|gb|ADC61997.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +GR ++   L   G+LA           V  G   +LT RE E L  ++EG+++  IA  
Sbjct: 118 QGRTVVASELT--GVLARAVRGESTPVPVVSGGAADLTPREQEILCHLAEGQSNKTIARE 175

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LGIS  TV  ++ +I+RK    +R  A   AV   +
Sbjct: 176 LGISEGTVKLHVKAILRKLDVHSRVEAAVIAVERGL 211


>gi|108805597|ref|YP_645534.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766840|gb|ABG05722.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 219

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I+EG ++ EIA  L +S  TV +++++I+ K     R+ A  YA R  
Sbjct: 153 ELSDREMEVLKLIAEGLSNAEIAARLYVSEKTVKSHVSNILGKLHLADRTQAAVYAWREG 212

Query: 245 IV 246
           +V
Sbjct: 213 VV 214


>gi|330976162|gb|EGH76228.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
 gi|330982505|gb|EGH80608.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 220

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR 
Sbjct: 154 FRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|258653900|ref|YP_003203056.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258557125|gb|ACV80067.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE++ L  ++EG+T+  IA  L +S  TV +++A I RK  T  RS  +A A
Sbjct: 139 GRLGRLTARELDVLRLVAEGRTNKWIAEQLSLSALTVKSHLARISRKLGTGDRSHQVAVA 198

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 199 MRAGMM 204


>gi|226308907|ref|YP_002768867.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226188024|dbj|BAH36128.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L+ ++EG T+ E+   L IS  TV  ++  I  K   +TRS A++ A+R +
Sbjct: 148 LTARESELLSLLAEGMTNRELGKALFISEATVKTHLGHIYAKLGVETRSAAVSVALRRD 206


>gi|34496978|ref|NP_901193.1| nitrate/nitrite response regulator protein [Chromobacterium
           violaceum ATCC 12472]
 gi|34102834|gb|AAQ59198.1| nitrate/nitrite response regulator protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 212

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LTGREVE L  ++ G  + EIA  LG S  T+ N+++SI+ K   + R  A+
Sbjct: 152 LTGREVEVLALMAGGFNNREIADALGPSEGTIKNHVSSILSKLGVRDRVRAV 203


>gi|301029752|ref|ZP_07192806.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|299877440|gb|EFI85651.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|332342581|gb|AEE55915.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 190

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 98  VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 157

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 158 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 187


>gi|312200777|ref|YP_004020838.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311232113|gb|ADP84968.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 225

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LTGRE + L  ++ G+T++EIA  L I+ +TV  ++AS+M K A + R
Sbjct: 162 LTGREEQVLAAVARGRTNNEIAAELYITLSTVKTHVASLMAKLAARNR 209


>gi|269960068|ref|ZP_06174445.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835367|gb|EEZ89449.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 225

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK     R+ A++ A+ 
Sbjct: 162 QLTTRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLDVHNRTHAVSKAIE 219


>gi|256390814|ref|YP_003112378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357040|gb|ACU70537.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +TGRE E LT++  G ++ EI V +GIS  TV  Y+  ++ K   + R+  +  A  N +
Sbjct: 162 ITGREREALTFVGRGLSNAEIQVAMGISAATVKTYVTRLLAKLDARDRAQLVIAAYENGL 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|329937507|ref|ZP_08287065.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329303383|gb|EGG47270.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 219

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GRE E LT I    ++ EIA  L +S  TV N++ +++RK   + R  A+  A  + 
Sbjct: 153 ELSGREREVLTLIGRALSNAEIAARLCLSEATVKNHVTAVLRKLGLRDRVQAVVTAYDHG 212

Query: 245 IV 246
           +V
Sbjct: 213 LV 214


>gi|297563570|ref|YP_003682544.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848018|gb|ADH70038.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 219

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+ G ++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA R  +
Sbjct: 158 LTPRELEVLRLIANGLSNGEIAASLFISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|332528620|ref|ZP_08404602.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332041936|gb|EGI78280.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 336

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F LT +E E L W+ +GK + +I  ILG S  TV  ++  +  K   +TR+ A A A+
Sbjct: 267 FRLTAKEAEVLYWVIKGKINRDIGDILGSSPMTVKKHLERVYAKLGVETRTAAAALAM 324


>gi|323165527|gb|EFZ51314.1| putative csgAB operon transcriptional regulatory protein [Shigella
           sonnei 53G]
          Length = 142

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 50  VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 109

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 110 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 139


>gi|312138597|ref|YP_004005933.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311887936|emb|CBH47248.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 217

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           + F L+GRE + L  +++G ++ EIA  L ISR TV  ++ +I  KT T++R
Sbjct: 153 ESFRLSGREHQILALVAQGASNAEIAAELLISRRTVATHLENIFAKTGTRSR 204


>gi|290957842|ref|YP_003489024.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647368|emb|CBG70473.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 237

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + F L+ REVE +  I+ G  + +IA    IS  TV N+I  I  K  + TRS AIA+
Sbjct: 169 RSFGLSSREVEVMDLIASGMNNRQIAATCFISEKTVKNHINRIFAKLHSATRSEAIAH 226


>gi|218235485|ref|YP_002366962.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
 gi|228952605|ref|ZP_04114681.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229069791|ref|ZP_04203074.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229079433|ref|ZP_04211974.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229150487|ref|ZP_04278703.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|218163442|gb|ACK63434.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
 gi|228632980|gb|EEK89593.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228703890|gb|EEL56335.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228713326|gb|EEL65218.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228807071|gb|EEM53614.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|30020351|ref|NP_831982.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|229109704|ref|ZP_04239290.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229144857|ref|ZP_04273254.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|29895902|gb|AAP09183.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228638579|gb|EEK95012.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228673745|gb|EEL29003.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|54294847|ref|YP_127262.1| hypothetical protein lpl1926 [Legionella pneumophila str. Lens]
 gi|148359520|ref|YP_001250727.1| hypothetical protein LPC_1430 [Legionella pneumophila str. Corby]
 gi|296107564|ref|YP_003619265.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Legionella pneumophila 2300/99
           Alcoy]
 gi|53754679|emb|CAH16166.1| hypothetical protein lpl1926 [Legionella pneumophila str. Lens]
 gi|148281293|gb|ABQ55381.1| hypothetical protein LPC_1430 [Legionella pneumophila str. Corby]
 gi|295649466|gb|ADG25313.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Legionella pneumophila 2300/99
           Alcoy]
          Length = 270

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L  R++EC   +  GKT++EIA+IL +S+ TV +YI  + RK
Sbjct: 204 LPKRQIECAQLLVRGKTAEEIAIILNLSKRTVEHYINILKRK 245


>gi|89100435|ref|ZP_01173298.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89084864|gb|EAR64002.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 214

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  I EG T+ EI+  L I   TV  ++++I+ K +   R+ A  YA +N 
Sbjct: 147 ELTERELEVLLCIGEGMTNQEISNQLFIGIKTVKTHVSNILSKLSVSDRTQAAVYAHQNG 206

Query: 245 IV 246
           ++
Sbjct: 207 LI 208


>gi|282900664|ref|ZP_06308606.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194464|gb|EFA69419.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 231

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             ++ RE E L  ++ G ++ EI   L +S  TV  Y++S++RKT++  R+  + +A+++
Sbjct: 168 MSISTREREVLELLTHGLSNAEIGSKLYLSPRTVEKYVSSLLRKTSSNNRAELVRFAIKH 227

Query: 244 NIV 246
            IV
Sbjct: 228 GIV 230


>gi|56962510|ref|YP_174236.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908748|dbj|BAD63275.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 199

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+ +  +  LT RE + L  I+EG+T+ +IA  L I+  TV NY++ I+ K     R  A
Sbjct: 129 DMVYHNETPLTEREEQVLKLIAEGRTTQQIADELKITNGTVRNYVSVILDKLEVGNRIEA 188

Query: 237 IAY 239
           I+Y
Sbjct: 189 ISY 191


>gi|170682157|ref|YP_001744145.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           SMS-3-5]
 gi|191172365|ref|ZP_03033906.1| transcriptional regulator CsgD [Escherichia coli F11]
 gi|312968892|ref|ZP_07783099.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 2362-75]
 gi|170519875|gb|ACB18053.1| transcriptional regulator CsgD [Escherichia coli SMS-3-5]
 gi|190907249|gb|EDV66847.1| transcriptional regulator CsgD [Escherichia coli F11]
 gi|312286294|gb|EFR14207.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 2362-75]
 gi|320178529|gb|EFW53494.1| Transcriptional regulator CsgD for 2nd curli operon [Shigella
           boydii ATCC 9905]
 gi|323174844|gb|EFZ60459.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli LT-68]
 gi|323185839|gb|EFZ71200.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1357]
 gi|333005785|gb|EGK25303.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-218]
          Length = 190

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 98  VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 157

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 158 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 187


>gi|152987214|ref|YP_001346031.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150962372|gb|ABR84397.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7]
          Length = 496

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 126 MDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           ++ + C L    D++  R   M L      +++D  W    L    AN+ ++     G +
Sbjct: 363 LNEQDCVLVALLDISDRRRTEMELVHAIETVMQDTSWFSRTLIEKLANVRRANAPGTGAE 422

Query: 184 F-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +LT RE E    I +G    EIA  LG++ NTV N++A+I  K    +R  AI +A
Sbjct: 423 LADLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWA 480


>gi|82703694|ref|YP_413260.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411759|gb|ABB75868.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 257

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE E L  +  GK++ EIA +L IS  TV N+I  I++K     R+ A+A A+
Sbjct: 196 ITDRETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKILKKLDVNNRAHAVAKAM 251


>gi|317054416|ref|YP_004118441.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
 gi|316952411|gb|ADU71885.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 243

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L W S GKT  EIA +L I+ +TV  ++  I++K        AI+ A+ 
Sbjct: 174 DDTLSARENEILYWSSTGKTYPEIARMLDITVSTVKFHMGKIVKKLGVNNAKHAISLAIE 233

Query: 243 NNIV 246
            NI+
Sbjct: 234 LNII 237


>gi|284042986|ref|YP_003393326.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Conexibacter woesei DSM 14684]
 gi|283947207|gb|ADB49951.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Conexibacter woesei DSM 14684]
          Length = 873

 Score = 44.7 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGR 189
           C   F  A   IG +L     R++ R   W  +G +A                D  L+ R
Sbjct: 760 CRRPFAEAGAPIGALL-----RVLARRGPWPPVGFVAELLDERPAGTAAEAPGDSALSQR 814

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           E   L ++  G +  EIA  LG+S NTV  +++SI RK   ++R+ A+A A
Sbjct: 815 ERAILRYLPSGLSKREIAGELGVSANTVKTHVSSIYRKLDVRSRAQAVARA 865


>gi|167758853|ref|ZP_02430980.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704]
 gi|167663593|gb|EDS07723.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704]
          Length = 207

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E++G+E+E ++ ++EG ++ EIA  L +S  TV NYI+SI+ K   + R+    Y
Sbjct: 147 EISGKELEVISLVAEGLSNKEIAKRLFLSEGTVRNYISSILDKLELRDRTQLAVY 201


>gi|323489900|ref|ZP_08095122.1| transcriptional regulatory protein degU (protease production
           enhancer protein) [Planococcus donghaensis MPA1U2]
 gi|323396407|gb|EGA89231.1| transcriptional regulatory protein degU (protease production
           enhancer protein) [Planococcus donghaensis MPA1U2]
          Length = 224

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++G+++  I   L IS  TV N+++SI++K     R+ A+  A++N 
Sbjct: 161 LTKRESEVLQLLTDGQSNRVIGETLFISEKTVKNHVSSILQKMQVNDRTQAVVTAIKNG 219


>gi|298241349|ref|ZP_06965156.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554403|gb|EFH88267.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  ++ G+ S EIA  LGIS  TV +++ SI  K    +R+ A+A  ++  
Sbjct: 162 ELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGIKRG 221

Query: 245 IV 246
           ++
Sbjct: 222 LL 223


>gi|317129844|ref|YP_004096126.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474792|gb|ADU31395.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 74

 Score = 44.7 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   VR
Sbjct: 12  LTKREREVFELLVQDKTTKEIAAELFISEKTVRNHISNTMQKLGVKGRSQAVIELVR 68


>gi|317125782|ref|YP_004099894.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589870|gb|ADU49167.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM
           43043]
          Length = 978

 Score = 44.7 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  ++EG ++ EI   L +S NT  N++ SI+ KTA   R+ A  +A  + +
Sbjct: 914 LTEREVDVLRLVAEGLSNREIGERLFLSANTAANHVRSILGKTAAPNRTKAAIFATEHGL 973

Query: 246 V 246
           +
Sbjct: 974 L 974


>gi|298243182|ref|ZP_06966989.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
 gi|297556236|gb|EFH90100.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
          Length = 1019

 Score = 44.7 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            LT RE+E L  ++ G TS +IA  L IS  TVN ++ SI  K    +RS A  YA+ + +
Sbjct: 958  LTTREIEVLRLLATGMTSAQIAEKLVISILTVNTHVRSIYSKLGVTSRSAATRYALEHKL 1017

Query: 246  V 246
            +
Sbjct: 1018 L 1018


>gi|298251729|ref|ZP_06975532.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546321|gb|EFH80189.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  ++ G+ S EIA  LGIS  TV +++ SI  K    +R+ A+A  ++  
Sbjct: 162 ELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGIKRG 221

Query: 245 IV 246
           ++
Sbjct: 222 LL 223


>gi|163760010|ref|ZP_02167094.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162282968|gb|EDQ33255.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 247

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++T RE++ L ++  G TS+E+   LG+S +TV+ Y+  I  K   K R   +A A R 
Sbjct: 184 MQMTKREMQTLEYLGCGMTSNEMGTALGLSAHTVDWYMNGIQEKLHAKNRHHVVAIAFRL 243

Query: 244 NIV 246
            ++
Sbjct: 244 GLI 246


>gi|154686976|ref|YP_001422137.1| GerE [Bacillus amyloliquefaciens FZB42]
 gi|308174538|ref|YP_003921243.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7]
 gi|154352827|gb|ABS74906.1| GerE [Bacillus amyloliquefaciens FZB42]
 gi|307607402|emb|CBI43773.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328554460|gb|AEB24952.1| transcriptional regulator [Bacillus amyloliquefaciens TA208]
 gi|328912864|gb|AEB64460.1| transcriptional regulator of spore coat protein [Bacillus
           amyloliquefaciens LL3]
          Length = 74

 Score = 44.7 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 182 KDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           KDF+    LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+
Sbjct: 4   KDFQSKPLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAV 63

Query: 238 AYAVR 242
              +R
Sbjct: 64  VELLR 68


>gi|260174355|ref|ZP_05760767.1| LuxR family transcriptional regulator [Bacteroides sp. D2]
 gi|315922623|ref|ZP_07918863.1| luxR family transcriptional regulator [Bacteroides sp. D2]
 gi|313696498|gb|EFS33333.1| luxR family transcriptional regulator [Bacteroides sp. D2]
          Length = 200

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +IM K   K+ SG   YAV N  
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIMEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|224552990|gb|ACN54746.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           K+  L+ RE E L W+S GKT  E+++IL I+  TV  ++ ++M+K        A+
Sbjct: 144 KNVFLSPREREILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAV 199


>gi|218672192|ref|ZP_03521861.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 233

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 13/136 (9%)

Query: 105 PTELFCPVFH-TLPENIT-PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           P EL   + H  +P  +  P   +D R     F   R  +G   +     IIL       
Sbjct: 105 PAELRALMLHHAIPAGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIIILHA----- 159

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L AY         VH      L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ 
Sbjct: 160 --LDAYNTVRRNEESVHNA----LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMT 213

Query: 223 SIMRKTATKTRSGAIA 238
           + ++K     R+  +A
Sbjct: 214 NAIKKLDCVNRTQLVA 229


>gi|146311212|ref|YP_001176286.1| DNA-binding transcriptional regulator CsgD [Enterobacter sp. 638]
 gi|145318088|gb|ABP60235.1| response regulator receiver protein [Enterobacter sp. 638]
          Length = 216

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGSSNIEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|37521252|ref|NP_924629.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212248|dbj|BAC89624.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 210

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  + +G+T+ EIA  L I   TV  ++ +I+ K     R+ A   A+R  
Sbjct: 146 ELTARELEVLHLVVKGQTNKEIAASLFIGEGTVRAHMNNILAKMGAHDRTQAATLAIRRG 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|13475096|ref|NP_106660.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025847|dbj|BAB52446.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 241

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL W ++GK++ EI  ILGI   T   ++ +  +K   +T++ A+
Sbjct: 179 LTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230


>gi|107103010|ref|ZP_01366928.1| hypothetical protein PaerPA_01004079 [Pseudomonas aeruginosa PACS2]
 gi|152989609|ref|YP_001347033.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7]
 gi|150964767|gb|ABR86792.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7]
          Length = 224

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K
Sbjct: 164 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 205


>gi|239979192|ref|ZP_04701716.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291451071|ref|ZP_06590461.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354020|gb|EFE80922.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LTGRE + L   ++G T  +IAV L +S +TV NY+++ + KT+T+ R  A+  A R  
Sbjct: 153 LTGRERDALNASADGATVADIAVRLRLSESTVRNYLSAAIGKTSTRNRMEAVREARRQG 211


>gi|92116611|ref|YP_576340.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799505|gb|ABE61880.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 201

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  ++EG  +  IA  LGIS +TV  ++A+++ K     R+ AIA A+R 
Sbjct: 137 IHLSPREAEVLALLAEGAPNKVIARRLGISVHTVKFHVAALLVKLGAANRTDAIATAMRQ 196

Query: 244 NIV 246
            +V
Sbjct: 197 GLV 199


>gi|325982862|ref|YP_004295264.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
 gi|325532381|gb|ADZ27102.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
          Length = 205

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 6/82 (7%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAV 208
           ++R++L  + + AA+     +  D+   K+      +LTGRE E +T   +G T+ EIA 
Sbjct: 108 VIREKLL-VCVRAAFAEAKKRISDIARNKEMMSCLIKLTGREREVMTLAVQGHTNKEIAS 166

Query: 209 ILGISRNTVNNYIASIMRKTAT 230
            LGIS  TV  + + IM+KT  
Sbjct: 167 CLGISHRTVEIHKSKIMQKTGA 188


>gi|229015004|ref|ZP_04172081.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
 gi|228746271|gb|EEL96197.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
          Length = 188

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 180 WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            G + E LT  E   L  IS+ KT+ EI+  L IS+ TV  +I+SI+RK    +R GA+ 
Sbjct: 118 MGNNIEALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSIIRKLGVDSRVGAVV 177

Query: 239 YAVRNNIV 246
             ++  ++
Sbjct: 178 KGIKKGLI 185


>gi|167751935|ref|ZP_02424062.1| hypothetical protein ALIPUT_00177 [Alistipes putredinis DSM 17216]
 gi|167660176|gb|EDS04306.1| hypothetical protein ALIPUT_00177 [Alistipes putredinis DSM 17216]
          Length = 203

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + +EL+ RE E L  ++ G T+ EIA    IS +TV ++  +I RKT  KT +G   YA+
Sbjct: 132 EGYELSEREREILVAVARGLTNREIADQYFISIHTVISHRKNITRKTGIKTIAGLTVYAL 191

Query: 242 RNNIV 246
            NN++
Sbjct: 192 LNNMI 196


>gi|108804387|ref|YP_644324.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765630|gb|ABG04512.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 220

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE+E L  ++ G ++ EIA  L I+  TV N+I+SI+RK   + R+ A  YA+   
Sbjct: 157 LSEREMEVLRLVASGASNREIARALYITEGTVKNHISSILRKLGFRDRTQAALYALERG 215


>gi|315641236|ref|ZP_07896313.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315483003|gb|EFU73522.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  IS GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ 
Sbjct: 147 ELTNREKEVLQLISNGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQAAIYAFKHG 206

Query: 245 IV 246
            +
Sbjct: 207 YI 208


>gi|298245303|ref|ZP_06969109.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552784|gb|EFH86649.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 221

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  ++ G T+ +IA  L +S  T  N+++ I+ K     RS A  YAV +N+
Sbjct: 148 ITEREREVLALVARGYTNKQIAEGLSMSEKTARNHVSHILEKLGLTRRSEAAVYAVEHNL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|229017580|ref|ZP_04174475.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229023797|ref|ZP_04180282.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228737482|gb|EEL87992.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228743723|gb|EEL93828.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 211

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|298244504|ref|ZP_06968310.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551985|gb|EFH85850.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 232

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  ++ G  S +IA  LGI+  TV  Y+ SI  K    +R+ AI  A+R 
Sbjct: 160 IDLTEREREVLIAVARGDRSKDIARHLGIAERTVRAYLTSIYTKLNVTSRASAITVAIRY 219

Query: 244 NIV 246
            I+
Sbjct: 220 GIL 222


>gi|206971450|ref|ZP_03232400.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
 gi|206733435|gb|EDZ50607.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|106879460|emb|CAJ20013.1| putative DNA binding regulatory protein [Streptomyces cattleya]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE+E L  ++ G ++ EIA  L +   TV ++++ ++ K   + RS AIA A R  +
Sbjct: 157 LTGRELEVLRLMAAGMSNAEIAGHLSLGEATVKSHVSRLLGKLGLRNRSQAIACAYRTGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|297156369|gb|ADI06081.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 280

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 155 LRDR-LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           LR+R L   G LA  +A+   + D       EL+ REV+ L  ++ G T+   A  LG+ 
Sbjct: 189 LRERILSACGRLA--KASSGGTADTAARPGVELSPREVDVLACVASGATNSAAADRLGLR 246

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV +Y+ S MRK    TR  A+  A R  ++
Sbjct: 247 PETVKSYLRSSMRKLGAHTRLHAVVEARRAGLL 279


>gi|288924538|ref|ZP_06418483.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288344115|gb|EFC78699.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 214

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +R+ A  Y ++ 
Sbjct: 155 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 212


>gi|228908028|ref|ZP_04071877.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851625|gb|EEM96430.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|167736311|dbj|BAG07412.1| LuxR-like protein [Gluconacetobacter polyoxogenes]
          Length = 236

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE ECL W ++GK+S E  +I+G+S  TVN +I + + K     R   +  A+
Sbjct: 174 LTPREKECLRWTAKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAI 229


>gi|221067254|ref|ZP_03543359.1| transcriptional regulator, LuxR family [Comamonas testosteroni
           KF-1]
 gi|264678319|ref|YP_003278226.1| LuxR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299532162|ref|ZP_07045556.1| transcriptional regulator, LuxR family protein [Comamonas
           testosteroni S44]
 gi|220712277|gb|EED67645.1| transcriptional regulator, LuxR family [Comamonas testosteroni
           KF-1]
 gi|262208832|gb|ACY32930.1| transcriptional regulator, LuxR family [Comamonas testosteroni
           CNB-2]
 gi|298719824|gb|EFI60787.1| transcriptional regulator, LuxR family protein [Comamonas
           testosteroni S44]
          Length = 180

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 29/60 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+    H     ELTGRE E    + EG TS EI   L IS  TV  Y A +MRK    T
Sbjct: 110 FEDLSAHRPVKAELTGREREVAARLLEGMTSKEIGKALAISHRTVEIYRARLMRKYGAST 169


>gi|158318665|ref|YP_001511173.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158114070|gb|ABW16267.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 244

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +R+ A  Y ++  
Sbjct: 184 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQT 242


>gi|317130322|ref|YP_004096604.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475270|gb|ADU31873.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 232

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 169 LTRRECEVLQLMTDGKSNRAIGEALYISEKTVKNHVSNILQKMGMNDRTQAVVDAIKN 226


>gi|229190347|ref|ZP_04317348.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228593131|gb|EEK50949.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|83312959|ref|YP_423223.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947800|dbj|BAE52664.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE + L  ++EG T+ ++A ILGIS  TV+ +  +IM K   +T     A A+R  +
Sbjct: 164 LSGRERQVLKLLAEGYTNQKVAGILGISVKTVDRHRENIMNKLGVRTPVALAAIALREGL 223

Query: 246 V 246
           V
Sbjct: 224 V 224


>gi|308176496|ref|YP_003915902.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743959|emb|CBT74931.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 220

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR--SGAIAYAVRN 243
           LTGRE E L  ++EG ++ ++A  LGI ++TV  +++ ++ K    TR  +  IAYA  +
Sbjct: 147 LTGREREVLDGLAEGLSNPQLAQRLGIGQSTVKTHVSQVLAKLGVSTRLQAAKIAYAATS 206

Query: 244 N 244
           +
Sbjct: 207 S 207


>gi|300783016|ref|YP_003763307.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792530|gb|ADJ42905.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE+E L  ++EG ++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA R
Sbjct: 155 EVPLTPRELEVLRLLAEGLSNSEIAERLVISQETVKTFVSRILTKLDLRDRVQAVVYAYR 214

Query: 243 NNI 245
           + +
Sbjct: 215 HGL 217


>gi|291483274|dbj|BAI84349.1| hypothetical protein BSNT_01381 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 220

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +LT RE+E L  +  G  + EIA  L I+  TV N++++I+ K A + R+ A  Y+VR
Sbjct: 156 LDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVR 214


>gi|46371737|gb|AAS90557.1| transcriptional activator [Burkholderia pseudomallei]
          Length = 239

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   +
Sbjct: 176 LTHRERKVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|333020553|gb|EGK39813.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-227]
          Length = 190

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 98  VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 157

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 158 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 187


>gi|300856053|ref|YP_003781037.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300436168|gb|ADK15935.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 224

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ IS+G ++ EI   L IS  TV NY  ++ +K     R  A   A+ NNI
Sbjct: 155 LSKREIEVLSKISKGYSNKEIGKQLYISEKTVKNYATNLFKKINVDDRVHAAIVAIENNI 214


>gi|121663600|emb|CAM12358.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae]
          Length = 239

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+  A+   +
Sbjct: 176 LTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|152977535|ref|YP_001377052.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|114152690|gb|ABI52594.1| two-component response regulator [Bacillus cytotoxicus]
 gi|152026287|gb|ABS24057.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 200

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT+++IA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREREVLLLAKEGKTTNDIAKALYLSPGTVRNYISEVLTKLNAKNRIEAITI 193

Query: 240 A 240
           A
Sbjct: 194 A 194


>gi|172056637|ref|YP_001813097.1| two component LuxR family transcriptional regulator
           [Exiguobacterium sibiricum 255-15]
 gi|171989158|gb|ACB60080.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sibiricum 255-15]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G  + EIA  L IS  TV  ++++I+ K     R+ A+ YA ++N
Sbjct: 147 DLTEREQEVLQLMARGMANQEIADELFISLKTVKTHVSNILSKLDVVDRTQAVVYAFKHN 206

Query: 245 IV 246
           IV
Sbjct: 207 IV 208


>gi|297624725|ref|YP_003706159.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297165905|gb|ADI15616.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 210

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 37/56 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LTGRE E +  ++ G ++ EIA+ L IS+ TV N+++S++ K   + R+ A+  A+
Sbjct: 150 LTGREREVVRLMAGGYSNREIALALHISQGTVKNHVSSVLSKLGVRDRTRAVLKAL 205


>gi|158333495|ref|YP_001514667.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158303736|gb|ABW25353.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 171 NMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             F+S+  + G+  +      LT RE + L W+ +G ++  IA  L I+  TV  ++ ++
Sbjct: 142 GFFRSFHFYEGRAVQSEQTLHLTAREKQVLHWLVQGASNQAIANHLHITIATVKAHLTAV 201

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K   K+RS AI  A++  +V
Sbjct: 202 FEKLEVKSRSQAIVKALKLGLV 223


>gi|145666435|gb|ABP88722.1| transcriptional activator protein [Pseudomonas corrugata]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P   II+R  L+ I  L+   AN ++  +     + +L+ RE+E L W++ GK   EI +
Sbjct: 146 PDFPIIVRSNLFIIKTLSVI-ANQYRPMETTIESNLKLSPREIEFLRWLALGKNYKEIGL 204

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ I+  TV  +   +  K        A+  AV+ N V
Sbjct: 205 IMNITERTVKFHAKQMTEKMDCTNVKQAMIKAVQLNFV 242


>gi|163940056|ref|YP_001644940.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862253|gb|ABY43312.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|229011537|ref|ZP_04168723.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228749692|gb|EEL99531.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 211

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|218246750|ref|YP_002372121.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059792|ref|YP_003137680.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167228|gb|ACK65965.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589958|gb|ACV00845.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 221

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA+      + D+  G D  LT RE E L  I+ GKT+ EIA  L I+  TV  ++ +I+
Sbjct: 140 AAFSKKPTINCDIIEGIDNPLTQREQEILALIALGKTNQEIAQTLSIATGTVRVHVHAIL 199

Query: 226 RKTATKTRSGAIAYAVRN 243
           +K   + R+ A   A+++
Sbjct: 200 QKLDVRDRTQAAIIALQH 217


>gi|289435776|ref|YP_003465648.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172020|emb|CBH28566.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313631967|gb|EFR99092.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL
           N1-067]
          Length = 228

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++ 
Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 223


>gi|229167101|ref|ZP_04294844.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228616335|gb|EEK73417.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 211

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|256378465|ref|YP_003102125.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922768|gb|ACU38279.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 215

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELTGRE++ L  ++ G ++ EIA  L ++  TV  ++ +I  K   + R+ AI +A  + 
Sbjct: 150 ELTGRELDVLRLMARGASNREIAGRLCLAETTVKTHVGAIFGKLGARDRAAAIVFAYDSG 209

Query: 245 IV 246
           IV
Sbjct: 210 IV 211


>gi|220926479|ref|YP_002501781.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219951086|gb|ACL61478.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 509

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE+E L  +  G ++ EI   LG++ NTV N+IA I  K     R+GA+ +A
Sbjct: 435 DLTPRELEVLGLMCRGLSNAEIVKKLGVTHNTVRNHIARIYAKIDVHDRAGAVVWA 490


>gi|238024809|ref|YP_002909041.1| AHL receptor [Burkholderia glumae BGR1]
 gi|55509000|gb|AAV52804.1| AHL receptor [Burkholderia glumae BGR1]
 gi|237879474|gb|ACR31806.1| AHL receptor [Burkholderia glumae BGR1]
          Length = 239

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+  A+   +
Sbjct: 176 LTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|16077897|ref|NP_388711.1| two-component response regulator YfiJ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308666|ref|ZP_03590513.1| hypothetical protein Bsubs1_04608 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312990|ref|ZP_03594795.1| hypothetical protein BsubsN3_04559 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317916|ref|ZP_03599210.1| hypothetical protein BsubsJ_04503 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322189|ref|ZP_03603483.1| hypothetical protein BsubsS_04599 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81818210|sp|P94439|YFIK_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yfiK
 gi|1817535|dbj|BAA11401.1| YfiK [Bacillus subtilis]
 gi|2633154|emb|CAB12659.1| two-component response regulator [YfiJ] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 220

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +LT RE+E L  +  G  + EIA  L I+  TV N++++I+ K A + R+ A  Y+VR
Sbjct: 156 LDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVR 214


>gi|330952743|gb|EGH53003.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 35/52 (67%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++F +T RE E   W + GKT +EIAV L IS+ TV+ +I++++ K   +T+
Sbjct: 174 ENFTITDREKEVYIWTAIGKTCNEIAVNLNISKRTVDFHISNVISKLGVRTK 225


>gi|313499754|gb|ADR61120.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           BIRD-1]
          Length = 219

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +AVR  I
Sbjct: 155 LTSRQLEILRLIVRGKSTREIAGGLGLSIKTVETHRSQIMKRLQIHDVAGLVLFAVREKI 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|302872826|ref|YP_003841462.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575685|gb|ADL43476.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 216

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 165 LAAYQANMFK----SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +A + AN+FK    + +    K   L+ RE+E    I++G ++ +I+ +L IS  TV NY
Sbjct: 130 IALFVANIFKKDLQNVNTTENKLKNLSERELEIARLIAQGYSNKDISKMLFISEGTVRNY 189

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
           I++I+ K   K R+    Y + N++
Sbjct: 190 ISTILEKLELKNRTQIAIYYLSNSL 214


>gi|148550964|ref|YP_001260394.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
 gi|148503375|gb|ABQ71627.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 289

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           IG +A  QA      D        L+ R+++C+  +++GK+  EI  ILG+SR+TV+ Y+
Sbjct: 199 IGTVAFDQARTLLGPDELANVPIALSPRQIDCIDLVAQGKSDWEIGQILGLSRDTVHEYV 258

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
               R+   + R+  +  AVR+ 
Sbjct: 259 EGARRRYGVRRRTQLVLRAVRDG 281


>gi|16801720|ref|NP_471988.1| hypothetical protein lin2659 [Listeria innocua Clip11262]
 gi|16804553|ref|NP_466038.1| hypothetical protein lmo2515 [Listeria monocytogenes EGD-e]
 gi|46908687|ref|YP_015076.1| DNA-binding response regulator DegU [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093717|ref|ZP_00231469.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b
           H7858]
 gi|47096108|ref|ZP_00233709.1| DNA-binding response regulator DegU [Listeria monocytogenes str.
           1/2a F6854]
 gi|217963383|ref|YP_002349061.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|224499869|ref|ZP_03668218.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes Finland 1988]
 gi|224503244|ref|ZP_03671551.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes FSL R2-561]
 gi|226225063|ref|YP_002759170.1| two-component response regulator DegU [Listeria monocytogenes
           Clip81459]
 gi|254825362|ref|ZP_05230363.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J1-194]
 gi|254828090|ref|ZP_05232777.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N3-165]
 gi|254831062|ref|ZP_05235717.1| two-component response regulator DegU [Listeria monocytogenes
           10403S]
 gi|254853956|ref|ZP_05243304.1| DegU [Listeria monocytogenes FSL R2-503]
 gi|254900347|ref|ZP_05260271.1| two-component response regulator DegU [Listeria monocytogenes
           J0161]
 gi|254913414|ref|ZP_05263426.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818]
 gi|254932243|ref|ZP_05265602.1| DNA-binding response regulator DegU [Listeria monocytogenes
           HPB2262]
 gi|254937795|ref|ZP_05269492.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900]
 gi|254993056|ref|ZP_05275246.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J2-064]
 gi|255030722|ref|ZP_05302673.1| two-component response regulator DegU [Listeria monocytogenes LO28]
 gi|255521855|ref|ZP_05389092.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J1-175]
 gi|284802953|ref|YP_003414818.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578]
 gi|284996094|ref|YP_003417862.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923]
 gi|290892678|ref|ZP_06555670.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J2-071]
 gi|300764985|ref|ZP_07074973.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N1-017]
 gi|16412003|emb|CAD00593.1| lmo2515 [Listeria monocytogenes EGD-e]
 gi|16415195|emb|CAC97885.1| lin2659 [Listeria innocua Clip11262]
 gi|46881959|gb|AAT05253.1| DNA-binding response regulator DegU [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47015569|gb|EAL06501.1| DNA-binding response regulator DegU [Listeria monocytogenes str.
           1/2a F6854]
 gi|47017911|gb|EAL08692.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b
           H7858]
 gi|50313181|gb|AAT74538.1| DegU [Listeria monocytogenes]
 gi|217332653|gb|ACK38447.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|225877525|emb|CAS06239.1| Putative two-component response regulator DegU [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258600475|gb|EEW13800.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N3-165]
 gi|258607345|gb|EEW19953.1| DegU [Listeria monocytogenes FSL R2-503]
 gi|258610399|gb|EEW23007.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900]
 gi|284058515|gb|ADB69456.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578]
 gi|284061561|gb|ADB72500.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923]
 gi|290557738|gb|EFD91260.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J2-071]
 gi|293583800|gb|EFF95832.1| DNA-binding response regulator DegU [Listeria monocytogenes
           HPB2262]
 gi|293591421|gb|EFF99755.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818]
 gi|293594605|gb|EFG02366.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J1-194]
 gi|300514285|gb|EFK41344.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N1-017]
 gi|307572042|emb|CAR85221.1| DNA-binding response regulator [Listeria monocytogenes L99]
 gi|313617172|gb|EFR89687.1| transcriptional regulatory protein DegU [Listeria innocua FSL
           S4-378]
 gi|313622371|gb|EFR92844.1| transcriptional regulatory protein DegU [Listeria innocua FSL
           J1-023]
 gi|328465121|gb|EGF36389.1| hypothetical protein LM1816_15707 [Listeria monocytogenes 1816]
 gi|328471125|gb|EGF42029.1| hypothetical protein LM220_09715 [Listeria monocytogenes 220]
 gi|332312945|gb|EGJ26040.1| Transcriptional regulatory protein degU [Listeria monocytogenes
           str. Scott A]
          Length = 228

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++ 
Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 223


>gi|237880805|gb|ACR33063.1| response regulator [Actinoplanes garbadinensis]
          Length = 222

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E L  + +G T  E+A  LG+S  TV  ++ +I RKT T  R+ A+  A+ N+
Sbjct: 152 REAEVLDLLRQGLTDREMARRLGLSAKTVEKHVGAIRRKTGTSNRTAAVVTALDND 207


>gi|229489109|ref|ZP_04382975.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
 gi|229324613|gb|EEN90368.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L+ ++EG T+ E+   L IS  TV  ++  I  K    TRS A++ A+R +
Sbjct: 148 LTARESELLSLLAEGMTNRELGKALFISEATVKTHLGHIYAKLGVDTRSAAVSVALRRD 206


>gi|172038808|ref|YP_001805309.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700262|gb|ACB53243.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 218

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I+ GKT+ EIA +L I+  TV  ++ +I++K   + R+ A   A+R N
Sbjct: 160 LTQREQEILALIAAGKTNSEIAQVLHIATGTVRVHVHAILQKLDVRDRTQAAILALRMN 218


>gi|218897232|ref|YP_002445643.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
 gi|218545309|gb|ACK97703.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|37523666|ref|NP_927043.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214671|dbj|BAC92038.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVIL 210
           +LRD ++    +A     +F  Y  H  +      LT RE E L W+  G ++DEIA  L
Sbjct: 128 VLRDEIYLPPEVATQFFRLFHYYAGHTVQSRSRIHLTEREQEVLHWLVRGASNDEIARNL 187

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I  K    +R+ AI  A++  +V
Sbjct: 188 YITIATVKAHLSAIFEKLQVTSRTQAIVAALKLGLV 223


>gi|294501833|ref|YP_003565533.1| two-component response regulator DegU [Bacillus megaterium QM
           B1551]
 gi|295707182|ref|YP_003600257.1| two-component response regulator DegU [Bacillus megaterium DSM 319]
 gi|126540400|emb|CAL44587.1| DegU protein [Bacillus megaterium DSM 319]
 gi|294351770|gb|ADE72099.1| two-component response regulator DegU [Bacillus megaterium QM
           B1551]
 gi|294804841|gb|ADF41907.1| two-component response regulator DegU [Bacillus megaterium DSM 319]
          Length = 227

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N 
Sbjct: 164 LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNG 222


>gi|156744143|ref|YP_001434272.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156235471|gb|ABU60254.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  ++ G+ + EIA  L I   TV  ++++I+RK    +R+ A  YAVR  
Sbjct: 146 KLTERETDVLRLLALGRANKEIARELNIGEKTVKTHVSAILRKLDVPSRTQAALYAVRIG 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|55821406|ref|YP_139848.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55737391|gb|AAV61033.1| response regulator (homolog to RR03 Spn) [Streptococcus
           thermophilus LMG 18311]
          Length = 214

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N  K +D H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K   
Sbjct: 134 NKIKYHDSHPNLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+ YA R+++V
Sbjct: 194 DDRTQAVVYAFRHHLV 209


>gi|15598673|ref|NP_252167.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1]
 gi|116051496|ref|YP_789670.1| transcriptional regulator RhlR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890275|ref|YP_002439139.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58]
 gi|1710203|sp|P54292|RHLR_PSEAE RecName: Full=Regulatory protein rhlR; AltName: Full=Elastase
           modulator
 gi|9949621|gb|AAG06865.1|AE004768_10 transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1]
 gi|151538|gb|AAA25983.1| rhlR [Pseudomonas aeruginosa]
 gi|452505|gb|AAA62130.1| regulatory protein [Pseudomonas aeruginosa]
 gi|1117918|gb|AAC44036.1| RhlR [Pseudomonas aeruginosa PAO1]
 gi|115586717|gb|ABJ12732.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|161724881|emb|CAO85753.1| RhlR protein [Pseudomonas aeruginosa]
 gi|211908969|gb|ACJ12779.1| rhamnosyl transferase I [actinobacterium MSA10]
 gi|211908971|gb|ACJ12780.1| rhamnosyl transferase I [actinobacterium MSA19]
 gi|218770498|emb|CAW26263.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58]
 gi|281331824|emb|CBI71035.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331826|emb|CBI71036.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331828|emb|CBI71037.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331830|emb|CBI71038.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331832|emb|CBI71039.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331834|emb|CBI71040.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331836|emb|CBI71041.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331838|emb|CBI71042.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331840|emb|CBI71043.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|299772610|gb|ADJ38517.1| transcriptional regulator RhlR [Pseudomonas sp. BSFD5]
          Length = 241

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K
Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 222


>gi|317476845|ref|ZP_07936088.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316907020|gb|EFV28731.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 217

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+  ELT RE++ L  ISEGK + EIA  L +S NTV+ +   ++ K   K  +  I  A
Sbjct: 147 GRREELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHLLDKLDAKNVADLIMTA 206

Query: 241 VRNNIV 246
           +   I+
Sbjct: 207 ISRGII 212


>gi|315304744|ref|ZP_07874927.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL
           F6-596]
 gi|313626888|gb|EFR95838.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL
           F6-596]
          Length = 228

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++ 
Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 223


>gi|302035554|ref|YP_003795876.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300603618|emb|CBK39949.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 223

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE+  L  +++GKT+ EIA  L +S  TV N++ +I  K     R+ A   A+R
Sbjct: 154 EHDLTEREITVLRLVADGKTNKEIANNLDLSEKTVKNHVRNIFHKLQVYDRTQAAILAIR 213

Query: 243 NNIV 246
             ++
Sbjct: 214 KGLI 217


>gi|300088311|ref|YP_003758833.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528044|gb|ADJ26512.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 231

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE + L  +++G T+ +IA  L IS  T+ N+I++I+RK     R+ A   A+R
Sbjct: 159 LTQRERQILIRVTDGLTNKQIATELKISEQTIKNHISAILRKLNANDRAHAAVLAIR 215


>gi|229021072|ref|ZP_04177731.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
 gi|229024513|ref|ZP_04180960.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228736801|gb|EEL87349.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228740232|gb|EEL90571.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
          Length = 188

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G + E LT  E   L  IS+ KT+ EI+  L IS+ TV  +I+SI+RK    +R GA+  
Sbjct: 119 GNNIEALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSIIRKLGVDSRVGAVVK 178

Query: 240 AVRNNIV 246
            ++  ++
Sbjct: 179 GIKKGLI 185


>gi|229133094|ref|ZP_04261931.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228650370|gb|EEL06368.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 211

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|218129935|ref|ZP_03458739.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697]
 gi|217988045|gb|EEC54370.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697]
          Length = 217

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+  ELT RE++ L  ISEGK + EIA  L +S NTV+ +   ++ K   K  +  I  A
Sbjct: 147 GRREELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHLLDKLDAKNVADLIMTA 206

Query: 241 VRNNIV 246
           +   I+
Sbjct: 207 ISRGII 212


>gi|208401188|gb|ACI26687.1| RhlR transcriptional regulator [Pseudomonas aeruginosa]
 gi|209171245|gb|ACI42868.1| RhlR [Pseudomonas aeruginosa]
          Length = 241

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K
Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 222


>gi|149182159|ref|ZP_01860641.1| YhcZ [Bacillus sp. SG-1]
 gi|148850110|gb|EDL64278.1| YhcZ [Bacillus sp. SG-1]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  +++GK++ EIA  L I+  TV  +I++I  K     R+ A  YAV++
Sbjct: 149 HQLTNRERDVLKELAKGKSNKEIAASLYITEKTVKTHISNIFAKLEVSDRTQAALYAVKH 208

Query: 244 NI 245
            +
Sbjct: 209 GL 210


>gi|85376480|gb|ABC70477.1| acylhomoserine lactone-dependent transcriptional regulator
           [Pseudomonas sp. M18]
          Length = 215

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K
Sbjct: 155 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 196


>gi|77460178|ref|YP_349685.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77384181|gb|ABA75694.1| putative LuxR family response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 219

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +A
Sbjct: 150 AESHNLTARQLEILRLIVRGKSTREIANGLGLSIKTVETHRSQIMKRLQIYDVAGLVLFA 209

Query: 241 VRNNIV 246
           VR  I+
Sbjct: 210 VREQII 215


>gi|321314554|ref|YP_004206841.1| two-component response regulator YfiJ [Bacillus subtilis BSn5]
 gi|320020828|gb|ADV95814.1| two-component response regulator (YfiJ) [Bacillus subtilis BSn5]
          Length = 220

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +LT RE+E L  +  G  + EIA  L I+  TV N++++I+ K A + R+ A  Y+VR
Sbjct: 156 LDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVR 214


>gi|228900854|ref|ZP_04065069.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228965235|ref|ZP_04126329.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794469|gb|EEM41981.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228858780|gb|EEN03225.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|148258315|ref|YP_001242900.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410488|gb|ABQ38994.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+  E E L+W + GKT+ E A ILG+S   V  ++    RK  TK ++  +A A
Sbjct: 175 GQSRRLSRIEAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLETKNKTATVATA 234

Query: 241 VRNNIV 246
           + N  +
Sbjct: 235 LVNGEI 240


>gi|85713529|ref|ZP_01044519.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
 gi|85699433|gb|EAQ37300.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L W++EGK+  EI VIL +S + V+     +  K     R+   A A+R+N+
Sbjct: 130 LTPREMDILQWMAEGKSDWEIGVILKVSEHFVDKIARQLRAKLNATNRTQTAATALRHNL 189

Query: 246 V 246
           +
Sbjct: 190 I 190


>gi|330960353|gb|EGH60613.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 220

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + + VR 
Sbjct: 154 YNLTARQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMKRLQIYDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|296388005|ref|ZP_06877480.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAb1]
 gi|313108838|ref|ZP_07794823.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa 39016]
 gi|310881325|gb|EFQ39919.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa 39016]
          Length = 234

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K
Sbjct: 174 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 215


>gi|257869647|ref|ZP_05649300.1| regulatory protein [Enterococcus gallinarum EG2]
 gi|257803811|gb|EEV32633.1| regulatory protein [Enterococcus gallinarum EG2]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ 
Sbjct: 147 DLTNREKEVLLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHG 206

Query: 245 I 245
           +
Sbjct: 207 L 207


>gi|284008814|emb|CBA75576.1| quorum-sensing transcriptional activator [Arsenophonus nasoniae]
          Length = 257

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIA ILGI   TV  +I S+++K        AI   V 
Sbjct: 192 FSPRENEILYWASMGKTYSEIATILGIKLGTVKFHIGSVVKKLGVMNAKHAIRLGVE 248


>gi|167034704|ref|YP_001669935.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861192|gb|ABY99599.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1]
          Length = 82

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L W + GK+S EI  IL    +TVN ++++I+RK    TR  A+  A+R  +
Sbjct: 19  LTPRERQVLLWCAYGKSSWEIGRILDCKESTVNFHVSNILRKFDVPTRVVAVIKAIRYGL 78

Query: 246 V 246
           +
Sbjct: 79  L 79


>gi|254242162|ref|ZP_04935484.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192]
 gi|126195540|gb|EAZ59603.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K
Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 222


>gi|118464557|ref|YP_883346.1| LuxR family transcriptional regulator [Mycobacterium avium 104]
 gi|118165844|gb|ABK66741.1| transcriptional regulator, LuxR family protein [Mycobacterium avium
           104]
          Length = 523

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ EIA  L IS  T  N++     K     R GA  YA+++ +
Sbjct: 456 LTPREIEVLGHVARGASNKEIAAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGL 515

Query: 246 V 246
           V
Sbjct: 516 V 516


>gi|330684760|gb|EGG96455.1| putative response regulator protein VraR [Staphylococcus
           epidermidis VCU121]
          Length = 207

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKRETEVLKEMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|296168969|ref|ZP_06850636.1| LuxR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896355|gb|EFG76010.1| LuxR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 530

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G+++ EIA  L IS  TV N++  I  K     R GA  YA R+ +
Sbjct: 465 LTRREAEVLLHVARGQSNREIASALWISEKTVRNHVERIYAKIGVSNRIGASLYATRHGL 524

Query: 246 V 246
            
Sbjct: 525 T 525


>gi|254776638|ref|ZP_05218154.1| transcriptional regulator, LuxR family protein [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 523

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ EIA  L IS  T  N++     K     R GA  YA+++ +
Sbjct: 456 LTPREIEVLGHVARGASNKEIAAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGL 515

Query: 246 V 246
           V
Sbjct: 516 V 516


>gi|269792412|ref|YP_003317316.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100047|gb|ACZ19034.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 227

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L WIS+G  + EIA  + +S  TV N+++ I++K     R+ A  +A
Sbjct: 152 LTPREMEVLYWISQGLNNGEIARKMVLSEKTVKNHVSHILKKLDLVDRTQAAVFA 206


>gi|194015561|ref|ZP_03054177.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
 gi|194012965|gb|EDW22531.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
          Length = 229

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNNRTQAVVVAIKN 223


>gi|168789970|ref|ZP_02814977.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli O157:H7 str. EC869]
 gi|189370464|gb|EDU88880.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli O157:H7 str. EC869]
          Length = 240

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
            NTV  ++ ++ +K A K R+ A+++A
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|75761109|ref|ZP_00741104.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491401|gb|EAO54622.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 219

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 157 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 215


>gi|304399203|ref|ZP_07381070.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304353257|gb|EFM17637.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 215

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G+I+L + L  I +    +A   ++ D++     +LT RE E L  IS+G T+  IA  L
Sbjct: 125 GQIVLSEALTPILVARLREAQPGQTRDIN-----QLTRREREILQLISDGMTNKAIARKL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS +TV  ++  +++K   K+R  A  +A++N +
Sbjct: 180 DISESTVKVHVKYLLKKMNLKSRLEAAVWALQNGL 214


>gi|116873879|ref|YP_850660.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742757|emb|CAK21881.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 228

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++ 
Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 223


>gi|312960102|ref|ZP_07774614.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311285596|gb|EFQ64165.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 498

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE + L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A
Sbjct: 427 DLTARERDVLGLICEGLADKEIASRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWA 482


>gi|224552915|gb|ACN54696.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|41409450|ref|NP_962286.1| hypothetical protein MAP3352c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398281|gb|AAS05902.1| hypothetical protein MAP_3352c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 523

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ EIA  L IS  T  N++     K     R GA  YA+++ +
Sbjct: 456 LTPREIEVLGHVARGASNKEIAAALVISEKTARNHVERTYAKIGVSNRIGASMYALQHGL 515

Query: 246 V 246
           V
Sbjct: 516 V 516


>gi|298370036|ref|ZP_06981352.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281496|gb|EFI22985.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 219

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D H G    LT RE E L  ++ G ++  IA  L ++ +TV  Y+ SI+RK    +R  A
Sbjct: 146 DAHIGT---LTPRERETLHHLAIGHSNKVIAKKLNLAESTVKAYVQSILRKLGLSSRVQA 202

Query: 237 IAYAVRNNI 245
             YA++++I
Sbjct: 203 AVYAIQHDI 211


>gi|297583730|ref|YP_003699510.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297142187|gb|ADH98944.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 212

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +S G ++ EI   L IS  TV  ++++I+ K     R+ A+ YA + N
Sbjct: 147 QLTARELEVLELMSRGMSNQEIGDALYISLKTVKVHVSNILSKLGVHDRTQAVIYAFKEN 206

Query: 245 I 245
           +
Sbjct: 207 L 207


>gi|330810227|ref|YP_004354689.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378335|gb|AEA69685.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 494

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE + L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A
Sbjct: 424 ELTARERDVLGLICEGLADKEIAARLKLAPNTVRNHVATLYSKLDVHSRSEAIVWA 479


>gi|308067163|ref|YP_003868768.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305856442|gb|ADM68230.1| Transcriptional regulatory protein degU (Protease production
           enhancer protein) [Paenibacillus polymyxa E681]
          Length = 217

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L+W+++G  + EIA  L IS  TV ++ +++M K + KTR   + +A++  +
Sbjct: 154 LSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLSLKTRPELVKFALKKGL 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|297516127|ref|ZP_06934513.1| DNA-binding transcriptional regulator CsgD [Escherichia coli OP50]
          Length = 114

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 22  VLRGECYFTQKLASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFIS 81

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 82  ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 111


>gi|55823331|ref|YP_141772.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|116628130|ref|YP_820749.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|55739316|gb|AAV62957.1| response regulator (homolog to RR03 Spn) [Streptococcus
           thermophilus CNRZ1066]
 gi|116101407|gb|ABJ66553.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus
           thermophilus LMD-9]
 gi|312278734|gb|ADQ63391.1| Two-component response transcriptional regulator (CheY-like
           receiver and HTH DNA-binding domains), putative
           [Streptococcus thermophilus ND03]
          Length = 214

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N  K +D H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K   
Sbjct: 134 NKIKYHDSHPNLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+ YA R+++V
Sbjct: 194 DDRTQAVVYAFRHHLV 209


>gi|297566899|ref|YP_003685871.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296851348|gb|ADH64363.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 217

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ REV+ L  +++G T+ EIA  L +S  TV N ++ I +K     R+ A  YA+R  
Sbjct: 150 ELSEREVQILKLVAQGYTNLEIAGELSLSEKTVRNRLSEIFQKLHLNNRTQAALYALREG 209

Query: 245 IV 246
           + 
Sbjct: 210 LA 211


>gi|224552969|gb|ACN54732.1| PagR [Pantoea agglomerans]
 gi|224552972|gb|ACN54734.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|224552927|gb|ACN54704.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|224552918|gb|ACN54698.1| PagR [Pantoea agglomerans]
 gi|224552921|gb|ACN54700.1| PagR [Pantoea agglomerans]
 gi|224552924|gb|ACN54702.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+
Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAV 199


>gi|297583325|ref|YP_003699105.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297141782|gb|ADH98539.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 235

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 172 LTRRECEVLQLMTDGKSNRSIGEALYISEKTVKNHVSNILQKMGMNDRTQAVVDAIKN 229


>gi|608485|gb|AAA89073.1| VSMR [Pseudomonas aeruginosa]
          Length = 241

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K
Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKK 222


>gi|229172958|ref|ZP_04300510.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228610478|gb|EEK67748.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 215

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|298491036|ref|YP_003721213.1| LuxR family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298232954|gb|ADI64090.1| transcriptional regulator, LuxR family ['Nostoc azollae' 0708]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   + +A
Sbjct: 7   GTPVSLSDRELQIIDLVAGGLTNQEIAAKLEISKRTVDNHISNILTKTKTDNRVALVRWA 66

Query: 241 VR 242
           ++
Sbjct: 67  LQ 68


>gi|325676336|ref|ZP_08156015.1| response regulator [Rhodococcus equi ATCC 33707]
 gi|325552897|gb|EGD22580.1| response regulator [Rhodococcus equi ATCC 33707]
          Length = 231

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           + F L+GRE + L  +++G ++ EIA  L ISR TV  ++ +I  KT T++R
Sbjct: 167 ESFRLSGREHQILVLVAQGASNAEIAAELLISRRTVATHLENIFAKTGTRSR 218


>gi|288919771|ref|ZP_06414097.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288348871|gb|EFC83122.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 135

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +R+ A  Y ++ 
Sbjct: 75  LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 132


>gi|37223233|gb|AAQ90216.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE ECL W  EGK+S +I+ ILG S+ TV  ++ +   K  T  R
Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNR 232


>gi|325282015|ref|YP_004254557.1| two component transcriptional regulator, LuxR family [Odoribacter
           splanchnicus DSM 20712]
 gi|324313824|gb|ADY34377.1| two component transcriptional regulator, LuxR family [Odoribacter
           splanchnicus DSM 20712]
          Length = 223

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D E++ RE+E L  +  G ++ EIA  L IS+ TV+ + A+++ KT  +  +  + YA++
Sbjct: 158 DNEISERELEILYHVCLGLSNQEIADKLFISKRTVDKHRANLLSKTGCRNTAALVMYAIK 217

Query: 243 NNIV 246
           N ++
Sbjct: 218 NKMI 221


>gi|313636331|gb|EFS02121.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL
           S4-171]
          Length = 228

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++ 
Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 223


>gi|315283654|ref|ZP_07871783.1| transcriptional regulatory protein DegU [Listeria marthii FSL
           S4-120]
 gi|313612706|gb|EFR86719.1| transcriptional regulatory protein DegU [Listeria marthii FSL
           S4-120]
          Length = 69

 Score = 44.3 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++  
Sbjct: 6   LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 65

Query: 246 V 246
           V
Sbjct: 66  V 66


>gi|229491816|ref|ZP_04385637.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis
           SK121]
 gi|229321497|gb|EEN87297.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis
           SK121]
          Length = 292

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ LT    G T+++IA +LG++  TV +Y+ S M K    TR  A+  A R  +
Sbjct: 231 LTKREIDVLTVAGAGMTNNQIAGVLGLALFTVKSYMKSAMHKLGASTRLEAVVLARRGGM 290

Query: 246 V 246
           +
Sbjct: 291 I 291


>gi|296140566|ref|YP_003647809.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296028700|gb|ADG79470.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 218

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G+++ EIA  L +S  TV  +++ +++K   + R+ A+ YA    +
Sbjct: 155 LTPREREVLEAVAAGRSNAEIAETLFVSEQTVKTHVSKVLQKLGLRDRAQAVVYAYETGV 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|166798333|gb|ABY89695.1| transcriptional regulator [Mesorhizobium loti]
          Length = 241

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL W ++GK++ EI  ILGI   T   ++ +  +K   +T++ A+
Sbjct: 179 LTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230


>gi|319646806|ref|ZP_08001035.1| YhcZ protein [Bacillus sp. BT1B_CT2]
 gi|317391394|gb|EFV72192.1| YhcZ protein [Bacillus sp. BT1B_CT2]
          Length = 216

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I++GK++ EIA  L IS  TV  ++++++ K     R+ A  +AV++ 
Sbjct: 150 QLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFAVKHG 209

Query: 245 I 245
           +
Sbjct: 210 L 210


>gi|319791973|ref|YP_004153613.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594436|gb|ADU35502.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 214

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT R+ +CL ++  G+++ EIA +L +   TVN +I S M     K+R+ A+  A++
Sbjct: 142 LTNRQCQCLEFVGAGRSTKEIARLLSLHPGTVNYHIDSAMEALGVKSRAHAVQKALQ 198


>gi|258516412|ref|YP_003192634.1| transcriptional regulator, LuxR family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780117|gb|ACV64011.1| transcriptional regulator, LuxR family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 224

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+   ++ EIA  L IS  TV  ++++I+RK   + RS AI Y+ +N +
Sbjct: 160 LTRREMEILQLIAISLSNREIAKRLFISEPTVKTHVSNILRKLGQQNRSQAIVYSYKNGL 219

Query: 246 V 246
           +
Sbjct: 220 I 220


>gi|111224247|ref|YP_715041.1| LuxR family transcriptional regulator [Frankia alni ACN14a]
 gi|111151779|emb|CAJ63499.1| Putative LuxR-family transcriptional regulator (partial) [Frankia
           alni ACN14a]
          Length = 137

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           F LT RE+E LT ++ G ++ E A  L I   TV  Y+ SIMRK   + R+ A+  A
Sbjct: 74  FRLTLREMEVLTLVATGCSNVEAAEQLTIRAETVKTYMRSIMRKMGVRNRTAAVHTA 130


>gi|88706477|ref|ZP_01104181.1| two component system response regulator [Congregibacter litoralis
           KT71]
 gi|88699189|gb|EAQ96304.1| two component system response regulator [Congregibacter litoralis
           KT71]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  + +G  + EIA  LGI   TV  +++S++ K   + R+ A+ +A  + +
Sbjct: 156 LTGREQEALRCVGDGMNNQEIARHLGIGPATVKTHVSSLLSKLGLRDRAQAVVFAYESGL 215


>gi|302876066|ref|YP_003844699.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
 gi|307686787|ref|ZP_07629233.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Clostridium cellulovorans 743B]
 gi|302578923|gb|ADL52935.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
          Length = 805

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           E+  +A Y  N  K        DFE L+ +E+E +  I+EG T+ EIA  L IS  TV  
Sbjct: 724 ELKKMAIYYPNYIKE-----KHDFEELSKKELEVIRLIAEGCTNGEIAARLDISTATVKF 778

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA++++K   + R  A+  A  N++
Sbjct: 779 HIANLLKKLNAENRIMAVKIASENDL 804


>gi|239990355|ref|ZP_04711019.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447364|ref|ZP_06586754.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350311|gb|EFE77215.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + + L+ REVE +  I+ G ++ +IA    IS  TV N+I  I  K  + TRS AIA+
Sbjct: 245 QQYGLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSATRSEAIAH 302


>gi|229029980|ref|ZP_04186046.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228731328|gb|EEL82244.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 215

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|119510573|ref|ZP_01629703.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena
           CCY9414]
 gi|119464734|gb|EAW45641.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena
           CCY9414]
          Length = 87

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 40/59 (67%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             L+ RE++ +  ++ G T+ +IAV L IS+ TV+N+I++I+ KT T+ R   + +A++
Sbjct: 10  VSLSDRELQIIDLVAAGLTNQDIAVKLEISKRTVDNHISNILTKTQTENRVALVRWALQ 68


>gi|260430562|ref|ZP_05784535.1| regulatory protein, LuxR [Citreicella sp. SE45]
 gi|260418591|gb|EEX11848.1| regulatory protein, LuxR [Citreicella sp. SE45]
          Length = 253

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT RE ECLT+ S G ++ E A I+  S  TV  ++ + MRK   + R+ A+  A 
Sbjct: 189 QEVRLTPRERECLTYASFGNSAKETARIIDRSVPTVVMHLNAAMRKLGARNRTHAVTIAT 248

Query: 242 RNNIV 246
           R  ++
Sbjct: 249 RRRLI 253


>gi|159897512|ref|YP_001543759.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890551|gb|ABX03631.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  ++EG T+ +IA  L IS  TV ++  +IM K     R+  + YA+R  
Sbjct: 150 DLTDRELEVLKLVAEGLTNRQIAAQLVISVKTVQSHRTNIMEKLDLHDRTDLVKYAIRRG 209

Query: 245 IV 246
           ++
Sbjct: 210 MI 211


>gi|328886525|emb|CCA59764.1| hypothetical protein SVEN_6478 [Streptomyces venezuelae ATCC 10712]
          Length = 204

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +  LT RE+  L+  ++G    EIA  L +++ TV NY+AS++RK   + R  AI  A
Sbjct: 141 EMPLTRRELSVLSLAADGAPVAEIAATLFLTKGTVRNYMASVIRKVGARNRVDAIRIA 198


>gi|329907385|ref|ZP_08274651.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546980|gb|EGF31877.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 267

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 37/57 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           EL+ RE + + W ++GKT+ EIA+IL IS ++VN ++ + ++K     ++ A+  A 
Sbjct: 201 ELSQRERDVIRWCADGKTNAEIAMILNISTSSVNFHVLNFIKKLDASNKTHAVMKAA 257


>gi|295836933|ref|ZP_06823866.1| nitrate/nitrite response regulator [Streptomyces sp. SPB74]
 gi|295826282|gb|EDY45818.2| nitrate/nitrite response regulator [Streptomyces sp. SPB74]
          Length = 264

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 201 LTDREMDVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 260

Query: 246 V 246
           +
Sbjct: 261 L 261


>gi|229817781|ref|ZP_04448063.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM
           20098]
 gi|229785570|gb|EEP21684.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM
           20098]
          Length = 248

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLTTVKTHVAHILSKINARDRVQAVVFAYENH 246

Query: 245 IV 246
           +V
Sbjct: 247 LV 248


>gi|322516397|ref|ZP_08069322.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322125130|gb|EFX96523.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 214

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N  K +D H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K   
Sbjct: 134 NKIKYHDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+ YA R+++V
Sbjct: 194 DDRTQAVVYAFRHHLV 209


>gi|319653107|ref|ZP_08007209.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2]
 gi|317395028|gb|EFV75764.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2]
          Length = 199

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +G++  LT RE E L  I++GK + EIA  L I   TV NYI++I+ K     R  A
Sbjct: 129 DDVYGEENPLTDREKEVLELIADGKNTREIADQLSIKTGTVRNYISAILDKLEVTNRIEA 188

Query: 237 IAYA 240
           I  +
Sbjct: 189 ITQS 192


>gi|239627726|ref|ZP_04670757.1| two-component protein Kinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517872|gb|EEQ57738.1| two-component protein Kinase [Clostridiales bacterium 1_7_47FAA]
          Length = 209

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE++ +  +++G  + EIA  L ++  TV N I+ ++ K   K R+    +AV+
Sbjct: 145 DLDLTPREMDIMRLVAQGMDNREIAAGLFLAEGTVRNNISRLLEKLKLKDRTQLAVFAVK 204

Query: 243 NNI 245
           NN+
Sbjct: 205 NNL 207


>gi|116620723|ref|YP_822879.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223885|gb|ABJ82594.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 216

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EGK + E+A IL +S  TV  +  +I++K    + +  I YA+R  +
Sbjct: 155 LTTREREVLQLLAEGKNNKEVAAILNLSLYTVETHRGNILQKLNLHSGAELILYAIRKGV 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|157283845|ref|YP_001468113.1| two component LuxR family transcriptional regulator [Kineococcus
           radiotolerans SRS30216]
 gi|151362987|gb|ABS05989.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 241

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+GRE E L  I+EG  + +IA  LGIS +TV  ++  I+R+     R+ A  +A
Sbjct: 177 LSGREHEVLQLIAEGLANKQIARSLGISEHTVKVHVGRILRQLGVSGRTAAAVWA 231


>gi|330820206|ref|YP_004349068.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli
           BSR3]
 gi|327372201|gb|AEA63556.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli
           BSR3]
          Length = 240

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+  A+   +
Sbjct: 177 LTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGATNKVQAVVKAIGMGL 236

Query: 246 V 246
           +
Sbjct: 237 I 237


>gi|326382365|ref|ZP_08204057.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199095|gb|EGD56277.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 215

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T REVE L  ++ G  + E+A  + IS  TV  ++A +  K    TR+GA+A A+   I
Sbjct: 152 ITEREVEVLELLARGMGNKELAKTMFISEGTVKAHLAHVYGKLGVDTRAGAVAAAIERRI 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|326772918|ref|ZP_08232202.1| two-component system response regulator TcsR7 [Actinomyces viscosus
           C505]
 gi|326637550|gb|EGE38452.1| two-component system response regulator TcsR7 [Actinomyces viscosus
           C505]
          Length = 230

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 6/108 (5%)

Query: 143 GLMLLFPKGRIILRDRLWEI----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           G ++L PK   +L +RL       G       +  ++  + +G    L+ RE+E L  IS
Sbjct: 124 GNIVLTPKSSAVLSERLQPASADRGSTPPPSFSRKEASPLPFG--VTLSTRELEVLALIS 181

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E  T+ +IA  L +S  T+ +++++I+ K     R GA  +A+++ +V
Sbjct: 182 EALTNKQIANRLNLSEATIKSHVSAIIAKLGVPDRVGAAVFAMQHGLV 229


>gi|289550400|ref|YP_003471304.1| Two component transcriptional regulator VraR [Staphylococcus
           lugdunensis HKU09-01]
 gi|315660134|ref|ZP_07912991.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|289179932|gb|ADC87177.1| Two component transcriptional regulator VraR [Staphylococcus
           lugdunensis HKU09-01]
 gi|315494815|gb|EFU83153.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 209

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|255325408|ref|ZP_05366512.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
 gi|255297494|gb|EET76807.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
          Length = 219

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E L+ I+ G T+ EIA  + I+  TV  +++S+M K A + R   + +A R  I
Sbjct: 159 VTRREMEVLSLIARGATNSEIAAEMVIAETTVKTHVSSLMSKLAARDRVALVLFAQRAGI 218


>gi|239637871|ref|ZP_04678832.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri
           L37603]
 gi|239596434|gb|EEQ78970.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri
           L37603]
          Length = 207

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKRETEVLKEMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|269124429|ref|YP_003297799.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309387|gb|ACY95761.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 244

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 172 MFKSY--DVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           + +SY      G++ E  LT RE E L  ++EG +S EIA  L IS  TV  + A+I+ K
Sbjct: 164 LIRSYLEQARQGEEPETPLTPREEEILKLVAEGHSSREIADTLFISVKTVERHRANILAK 223

Query: 228 TATKTRSGAIAYAVRNNIV 246
              K R     YA+R  ++
Sbjct: 224 LGMKDRLELTRYAIRTGLI 242


>gi|262199427|ref|YP_003270636.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262082774|gb|ACY18743.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM
           14365]
          Length = 394

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           F LT RE E   WIS GK++ +IA IL I   TV  +   I  K   + R+  +
Sbjct: 320 FRLTPREAEVALWISRGKSNQDIATILSIRPGTVKKHAERIFMKLGVENRASVV 373


>gi|124265956|ref|YP_001019960.1| ATP-dependent transcriptional regulator-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258731|gb|ABM93725.1| ATP-dependent transcriptional regulator-like protein protein
           [Methylibium petroleiphilum PM1]
          Length = 919

 Score = 43.9 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 36/54 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE E +  ++EG+++  IA  LG+S +TV  ++A+I+ K A  +R+ A AY
Sbjct: 862 LSAREREVMALLAEGQSNKLIARALGLSLHTVKRHVANILTKLALDSRTQAAAY 915


>gi|27468447|ref|NP_765084.1| two-component response regulator-like protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867331|ref|YP_188953.1| LuxR family transcriptional regulator [Staphylococcus epidermidis
           RP62A]
 gi|242243070|ref|ZP_04797515.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811190|ref|ZP_04825663.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875769|ref|ZP_06284636.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366174|ref|ZP_06612860.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315994|gb|AAO05128.1|AE016749_74 two-component response regulator-like protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637989|gb|AAW54777.1| DNA-binding response regulator, LuxR family [Staphylococcus
           epidermidis RP62A]
 gi|242233528|gb|EES35840.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805318|gb|EES57975.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294794|gb|EFA87321.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319696|gb|EFE60056.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329724867|gb|EGG61370.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU144]
 gi|329734273|gb|EGG70588.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU045]
 gi|329737276|gb|EGG73530.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 207

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  + +GKT+ EIA  L +S  TV  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREKEVLKEMVKGKTNKEIARALFVSEKTVKTHVSHIFSKLEVSDRTQAAIYAMENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|255009756|ref|ZP_05281882.1| LuxR family transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313147543|ref|ZP_07809736.1| luxR family transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313136310|gb|EFR53670.1| luxR family transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 200

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV N 
Sbjct: 134 ELSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNG 193

Query: 245 IV 246
            V
Sbjct: 194 YV 195


>gi|167763839|ref|ZP_02435966.1| hypothetical protein BACSTE_02219 [Bacteroides stercoris ATCC
           43183]
 gi|298480014|ref|ZP_06998213.1| transcriptional regulator [Bacteroides sp. D22]
 gi|167697955|gb|EDS14534.1| hypothetical protein BACSTE_02219 [Bacteroides stercoris ATCC
           43183]
 gi|298273823|gb|EFI15385.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 183

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ R++E +  + +GK   EIA  L IS NTVNN+  +  RK    + +  + YA+ NN
Sbjct: 121 KLSDRQIEVMRMLYDGKNDSEIAEKLFISLNTVNNHRKNSFRKVGVHSMAEFMRYAMTNN 180

Query: 245 I 245
           +
Sbjct: 181 L 181


>gi|158425732|ref|YP_001527024.1| two component transcriptional regulator [Azorhizobium caulinodans
           ORS 571]
 gi|158332621|dbj|BAF90106.1| two component transcriptional regulator [Azorhizobium caulinodans
           ORS 571]
          Length = 310

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +T RE E L WI+ GK + +IA ILG+S  TVN ++  I  K   + R
Sbjct: 248 ITQREAEVLLWIARGKPNRDIAEILGLSPRTVNKHLEQIYAKIGVENR 295


>gi|261365900|ref|ZP_05978783.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
 gi|288565546|gb|EFC87106.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
          Length = 220

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +T+  ++ SI+RK    +R  A  YAV++N+
Sbjct: 157 LTTRELEILGYLAAGHSNKIIARKLNLAESTIKVHVQSILRKLELSSRVQAAVYAVQHNV 216


>gi|170692899|ref|ZP_02884061.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170142555|gb|EDT10721.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 240

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT+I+ G ++ EIA  L IS  TV  ++  I+RK    +R  A  YA  N I
Sbjct: 175 LSIREQEILTYIARGASNKEIARALAISETTVKIHVQHILRKLKLTSRVQAAVYATVNAI 234


>gi|154252142|ref|YP_001412966.1| two component LuxR family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156092|gb|ABS63309.1| two component transcriptional regulator, LuxR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 215

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 158 RLWEIG-------LLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209
           RL E+G       LL A+     ++ D   G   E LT R+ E L  + +G+++ EIA +
Sbjct: 114 RLIELGGRYIPDILLTAHAEGFAETTDSFLGAGHEKLTPRQREVLLELGKGRSNQEIAHV 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LGIS  TV  ++ +I++    + R+ A   A+R
Sbjct: 174 LGISIATVKLHVNAILQTLGVRNRTEAAIIALR 206


>gi|90420983|ref|ZP_01228887.1| possible transcriptional regulator, lysR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334761|gb|EAS48537.1| possible transcriptional regulator, lysR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 294

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE +CL     GKTS EI +IL +S  T++ Y+ +  RK     R+ A+A A +
Sbjct: 233 LSVRERDCLKLAMLGKTSSEIGIILSLSEYTISQYLTAAQRKLDASNRTHAVALAAQ 289


>gi|72163208|ref|YP_290865.1| regulatory protein LuxR [Thermobifida fusca YX]
 gi|71916940|gb|AAZ56842.1| regulatory protein, LuxR [Thermobifida fusca YX]
          Length = 286

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  ++ G T+DE+A  LG+  NTV +Y+ S MRK     R  A+  A
Sbjct: 225 LSPREREVLAEVARGCTNDEVAEALGLLPNTVKSYLKSAMRKLGATNRVQAVNLA 279


>gi|319650652|ref|ZP_08004792.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397833|gb|EFV78531.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 165 LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 222


>gi|90739296|gb|ABD97851.1| AvsR [Agrobacterium vitis]
          Length = 246

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 161 EIGLLAA-YQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRN 215
           +I LLA  + A + K  D   G D      LT RE E L W + GK+  E AVILGIS  
Sbjct: 153 DIHLLAGKFHAGLVKRCD---GADIAGTPPLTRREQETLRWTAAGKSYWETAVILGISER 209

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  ++A+   K    + + A+  A++  ++
Sbjct: 210 TVRYFMANARIKLDAVSNTQAVVKALQRGLI 240


>gi|229178632|ref|ZP_04305996.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228604790|gb|EEK62247.1| DNA-binding response regulator [Bacillus cereus 172560W]
          Length = 192

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 130 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188


>gi|254245083|ref|ZP_04938405.1| hypothetical protein PA2G_05969 [Pseudomonas aeruginosa 2192]
 gi|126198461|gb|EAZ62524.1| hypothetical protein PA2G_05969 [Pseudomonas aeruginosa 2192]
          Length = 130

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D EL  REV+CL  ++ G T  + A+ LG+S  TV   I   M K     R   +A A+R
Sbjct: 19  DSELAAREVQCLLAVAGGCTDKQAALSLGVSPRTVKGAIERAMHKLNAYRRPALVAEAMR 78

Query: 243 NNIV 246
             ++
Sbjct: 79  RGLI 82


>gi|126433026|ref|YP_001068717.1| LuxR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|126232826|gb|ABN96226.1| transcriptional regulator, LuxR family [Mycobacterium sp. JLS]
          Length = 544

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    LT RE+E L  ++ G T+ EIA  L IS  TV  ++ +I  K    +R+ A AYA
Sbjct: 479 GAPSGLTTRELEVLRLLATGATNREIARTLVISEKTVARHLGNIFNKLDVSSRTAATAYA 538

Query: 241 VRNNIV 246
            ++++V
Sbjct: 539 YQHDLV 544


>gi|108797407|ref|YP_637604.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866491|ref|YP_936443.1| LuxR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108767826|gb|ABG06548.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS]
 gi|119692580|gb|ABL89653.1| transcriptional regulator, LuxR family [Mycobacterium sp. KMS]
          Length = 544

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    LT RE+E L  ++ G T+ EIA  L IS  TV  ++ +I  K    +R+ A AYA
Sbjct: 479 GAPSGLTTRELEVLRLLATGATNREIAHTLVISEKTVARHLGNIFNKLDVSSRTAATAYA 538

Query: 241 VRNNIV 246
            ++++V
Sbjct: 539 YQHDLV 544


>gi|83589824|ref|YP_429833.1| two component LuxR family transcriptional regulator [Moorella
           thermoacetica ATCC 39073]
 gi|83572738|gb|ABC19290.1| two component transcriptional regulator, LuxR family [Moorella
           thermoacetica ATCC 39073]
          Length = 222

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +S GK++ EIA  L IS  TV N++  I  K     R+ A  YA+++ +
Sbjct: 157 LTAREREILIHVSLGKSNREIARELFISEKTVKNHLTHIFHKIGVSDRTQAALYALKHGL 216


>gi|291537091|emb|CBL10203.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis M50/1]
          Length = 261

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            H   +FEL+ RE E LT +  G T+ +IA  +GIS +TV  ++  I  K    TR+
Sbjct: 191 AHLAAEFELSEREKEALTCMDGGMTNAQIAENMGISLSTVKKHVYHIFEKVGVDTRA 247


>gi|269956412|ref|YP_003326201.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305093|gb|ACZ30643.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE++ L  ++EG ++ EIA  L I+R TV  Y++ I+ K   + R  A+ +A +
Sbjct: 155 DGPLTPRELDVLRLLAEGLSNAEIAAALVITRETVKTYVSRILTKLDLRDRVQAVVWAYQ 214

Query: 243 NNIV 246
             +V
Sbjct: 215 TGLV 218


>gi|254446876|ref|ZP_05060351.1| transcriptional regulator, LuxR family, putative [Verrucomicrobiae
           bacterium DG1235]
 gi|198256301|gb|EDY80610.1| transcriptional regulator, LuxR family, putative [Verrucomicrobiae
           bacterium DG1235]
          Length = 58

 Score = 43.9 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 30/51 (58%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L WI EGKT+ +I  IL IS  TV  +  SI RK   + R  AI +A+ +N
Sbjct: 2   LFWIVEGKTNGDIGRILEISPRTVEKHCESIFRKLGIENRYAAIVFALTSN 52


>gi|26990610|ref|NP_746035.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985594|gb|AAN69499.1|AE016584_7 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
          Length = 183

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G+   L  RE++CL  +++G T+ EIA   GIS + V   I   M K     R+  +A
Sbjct: 68  HLGRG--LAPRELQCLLEVAQGFTTKEIAKHFGISESGVEKRIGDAMLKLKVARRAAMVA 125

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 126 EAMRRQII 133


>gi|228958531|ref|ZP_04120251.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229044008|ref|ZP_04191697.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229127661|ref|ZP_04256650.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|296502827|ref|YP_003664527.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
 gi|228655738|gb|EEL11587.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228725289|gb|EEL76557.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228801158|gb|EEM48055.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296323879|gb|ADH06807.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
          Length = 192

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 130 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188


>gi|322381417|ref|ZP_08055416.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154644|gb|EFX46919.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 208

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           KG+ IL  ++      A    N F+          +LT RE+E L  I+ GK++ E+A  
Sbjct: 117 KGQPILESQV------ATKIMNRFRQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADE 170

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I   TV  ++ ++++K   + R+ A  YA ++ IV
Sbjct: 171 LFIGVKTVKFHVTNVLQKLGVEDRTQAAIYAFKHGIV 207


>gi|308186328|ref|YP_003930459.1| Transcriptional activator protein phzR [Pantoea vagans C9-1]
 gi|308056838|gb|ADO09010.1| Transcriptional activator protein phzR [Pantoea vagans C9-1]
          Length = 240

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + RE+E L W +EGKT+ EI++IL IS +TVN +  ++ ++     ++    YA 
Sbjct: 180 FSQRELEILKWTAEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAA 235


>gi|258516415|ref|YP_003192637.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780120|gb|ACV64014.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 223

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 38/219 (17%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF-----CPVFHT 115
            L+V  D+   + L SI S +  FD++   ++ E      +LQ    L        ++  
Sbjct: 6   ILIVAEDISSRRGLVSIFSLESMFDMLGGYSIDEAINKLVLLQPDVVLINIVGDISIYML 65

Query: 116 LPENITPP-------AGMDNRYCSLTFDVARI-RIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L + I          + +DN+      ++A++   GL    PKG  +L   L +I  L+ 
Sbjct: 66  LIKKIKSECPYSLVLSIIDNKKSE---EIAKVLNQGLDGYIPKG--VLSGYLVKIVELSC 120

Query: 168 YQA--------------NMFKSYDVHWGKDF------ELTGREVECLTWISEGKTSDEIA 207
           Y                N  K  ++H  K+        L+ RE+E L  +S+  ++ EIA
Sbjct: 121 YTGLFCLPGFVKNMVSFNSSKKNNIHKMKNSVVESCENLSKREMEILKLMSQNHSNTEIA 180

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +L IS  TV  ++++I+RK   + R+ AI Y++   ++
Sbjct: 181 GMLYISLPTVKTHVSNILRKLGQQNRAQAILYSIATGLI 219


>gi|57864907|gb|AAW57081.1| 2-component response regulator [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 224

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              T REV+ L  ++ G ++ +I   L +S  TV  Y++S++RKT T  R+  + +A+ +
Sbjct: 160 LHFTPREVQVLNLLTTGLSNGDIGQKLHLSPRTVEKYVSSLLRKTETNNRAELVRFALDH 219

Query: 244 NIV 246
           +++
Sbjct: 220 HLI 222


>gi|290955347|ref|YP_003486529.1| two-component system regulator [Streptomyces scabiei 87.22]
 gi|260644873|emb|CBG67959.1| putative two-component system regulator [Streptomyces scabiei
           87.22]
          Length = 236

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+EG ++ E+A +LGI+ +T   ++  ++ K   + R+ A+  A R+ +
Sbjct: 168 LTAREAQVLRLIAEGLSNAELAELLGIAESTAKTHVKRVLHKIGARDRAQAVVLAYRSGL 227

Query: 246 V 246
           +
Sbjct: 228 M 228


>gi|29833873|ref|NP_828507.1| LuxR family transcriptional regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610998|dbj|BAC75042.1| putative LuxR-family transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 900

 Score = 43.9 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+GRE E L  ++E  +++EIA  L +S NTV  ++ S+ RK A   R  A+  A
Sbjct: 839 ELSGREREVLQRLAEMMSTEEIAADLYVSVNTVKTHLKSVYRKLAVNRRHDAVRRA 894


>gi|121604753|ref|YP_982082.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593722|gb|ABM37161.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 262

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +L+ RE + L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+++A 
Sbjct: 201 KLSEREKQVLKLVASGYTSTEIGSRLIISGQTVNTHIKNIYRKLNVRTRAQAVSFAA 257


>gi|326334307|ref|ZP_08200525.1| putative two-component response regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325947916|gb|EGD40038.1| putative two-component response regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 224

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    LT RE+E L  I++G  + EIA  L +S NT+ ++I    RK    TRS A+++A
Sbjct: 132 GAAAGLTVREIEVLKLITQGLPNQEIAKRLAMSGNTLKSHIRRAYRKIHVTTRSQAVSWA 191

Query: 241 VRNNI 245
           + + +
Sbjct: 192 IAHGL 196


>gi|52079413|ref|YP_078204.1| putative transcriptional regulator YhcZ [Bacillus licheniformis
           ATCC 14580]
 gi|52784773|ref|YP_090602.1| YhcZ [Bacillus licheniformis ATCC 14580]
 gi|52002624|gb|AAU22566.1| putative transcriptional regulator YhcZ [Bacillus licheniformis
           ATCC 14580]
 gi|52347275|gb|AAU39909.1| YhcZ [Bacillus licheniformis ATCC 14580]
          Length = 217

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I++GK++ EIA  L IS  TV  ++++++ K     R+ A  +AV++ 
Sbjct: 150 QLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFAVKHG 209

Query: 245 I 245
           +
Sbjct: 210 L 210


>gi|121606967|ref|YP_984296.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595936|gb|ABM39375.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 246

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I+ G T+DEIA +L +S +TV  Y+  I  K   ++++ AI  A +  I
Sbjct: 184 LSSREMEVLQLITRGFTADEIARLLQVSSHTVQTYVRRIYSKLKVRSKAEAIYEARQQGI 243

Query: 246 V 246
           +
Sbjct: 244 L 244


>gi|163846245|ref|YP_001634289.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524000|ref|YP_002568470.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163667534|gb|ABY33900.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447879|gb|ACM52145.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 217

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L  I+ G ++ EIA  L IS  TV NY++S++ K A + R+ AI  A
Sbjct: 156 LTEREMDVLHGIAAGHSNREIADQLCISEGTVKNYVSSLLAKLAVRDRTQAIIRA 210


>gi|157693950|ref|YP_001488412.1| response regulator DegU [Bacillus pumilus SAFR-032]
 gi|157682708|gb|ABV63852.1| response regulator DegU [Bacillus pumilus SAFR-032]
          Length = 229

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 223


>gi|71737558|ref|YP_276359.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71558111|gb|AAZ37322.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 209

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+  G    LT R+ E L  ++ GKT+ EIA  LGIS  T+  +++S+++     TRS A
Sbjct: 138 DLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTMRIHVSSLLKALGVSTRSAA 197

Query: 237 IA 238
            A
Sbjct: 198 AA 199


>gi|226226404|ref|YP_002760510.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089595|dbj|BAH38040.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 209

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H   D  LT R++E L  ++EG+++ EIA  L IS  TV  +I +I++K   + R+ A+ 
Sbjct: 140 HVASD-ALTARQLEVLRSLAEGRSNIEIANTLYISEGTVKAHIKAILQKLGARDRTQAVT 198

Query: 239 YAVRNNIV 246
             ++  ++
Sbjct: 199 IGIKRGLI 206


>gi|254425219|ref|ZP_05038937.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
 gi|196192708|gb|EDX87672.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
          Length = 220

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  +++G ++  IA +L IS NTV  +I++I+ K    +R+ A++  ++  +
Sbjct: 158 LTTREVQVLNQLADGLSNKAIAQVLTISENTVKFHISAILAKLDVSSRTEAVSVGIKAGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|118468546|ref|YP_885876.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis
           str. MC2 155]
 gi|118169833|gb|ABK70729.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis
           str. MC2 155]
          Length = 220

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+++  G ++  IA  L I   TV  ++ SI RK     R+GA+A A+R  I
Sbjct: 159 LTQRESEILSFVVAGLSNRGIANKLVIGEETVKTHLRSIYRKLGVSDRAGAVATALREGI 218


>gi|119025623|ref|YP_909468.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765207|dbj|BAF39386.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 249

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 188 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 247

Query: 245 IV 246
           +V
Sbjct: 248 LV 249


>gi|116672252|ref|YP_833185.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116612361|gb|ABK05085.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24]
          Length = 426

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D++L  RE+E L  ++ G+ +  IA  L IS NTV  ++ +I RK    +R+ AIA A  
Sbjct: 363 DWKLGDRELEVLQLLAAGQRNRAIAAKLHISENTVKFHLRNIYRKVGATSRTEAIAMAHS 422

Query: 243 NNI 245
           N +
Sbjct: 423 NGV 425


>gi|322831866|ref|YP_004211893.1| LuxR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167067|gb|ADW72766.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602]
          Length = 216

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R ++R   +     A+Y  N   ++     ++  LT RE E L  +  G ++ EIA +L 
Sbjct: 122 RSVIRGECYFSQGFASYLINQSGAFRHLHSEETGLTHREKEILNKLRVGASNTEIARLLF 181

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IS NTV  ++ ++ RK + K R+ A ++A  N
Sbjct: 182 ISENTVKTHLYNLFRKISVKNRTQAASWANDN 213


>gi|224824369|ref|ZP_03697477.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224603788|gb|EEG09963.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 222

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 39/61 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L ++++G+++ EIA  L ++ +TV  ++ +I++K    +R  A  YAV + 
Sbjct: 157 KLTPREREILGFLAQGQSNKEIARTLDLAESTVKIHVQNILKKLGLSSRVQAAVYAVEHG 216

Query: 245 I 245
           +
Sbjct: 217 V 217


>gi|126650999|ref|ZP_01723210.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905]
 gi|126592200|gb|EAZ86249.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905]
          Length = 377

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K   V    +  LT RE   L  ++EG  + +I  +L +S +TV +Y++S+M K   K R
Sbjct: 304 KGEKVEKNTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNR 363

Query: 234 SGAIAYAVR 242
           +  +A A R
Sbjct: 364 TQVVASAFR 372


>gi|332672210|ref|YP_004455218.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332341248|gb|AEE47831.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484]
          Length = 77

 Score = 43.9 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  ++E  T +EIA  L ++RNTV + + S+ RK    TR+ A+A+AV + I
Sbjct: 17  LTRRERVVLGELAEDVTLEEIATRLFVTRNTVKSQVRSVYRKIGVSTRAEAVAWAVAHGI 76


>gi|312863730|ref|ZP_07723968.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
 gi|311101266|gb|EFQ59471.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
          Length = 214

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N  K +D H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K   
Sbjct: 134 NKIKYHDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+ YA R+++V
Sbjct: 194 DDRTQAVVYAFRHHLV 209


>gi|300784158|ref|YP_003764449.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793672|gb|ADJ44047.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 236

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE + L  ++ G+   +IA+ILGI   TV  Y+  I  KT  + R G +  A+R
Sbjct: 162 EAELSPREEQVLRLVAAGERDVDIALILGIGVRTVRGYLDRIRDKTGERRRPGLVKEAIR 221

Query: 243 NNIV 246
             ++
Sbjct: 222 RGLI 225


>gi|296102946|ref|YP_003613092.1| sgAB operon transcriptional regulatory protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057405|gb|ADF62143.1| sgAB operon transcriptional regulatory protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 216

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGASNIEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|167463122|ref|ZP_02328211.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 214

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N F+          +LT RE+E L  I+ GK++ E+A  L I   TV  ++ ++++K   
Sbjct: 138 NRFRQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVTNVLQKLGV 197

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+ A  YA ++ IV
Sbjct: 198 EDRTQAAIYAFKHGIV 213


>gi|148658579|ref|YP_001278784.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570689|gb|ABQ92834.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 221

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  + EG T+ EIAV LG++  TV  ++ SI+RK    +R  A+ +A R+ I
Sbjct: 146 LSERESAVLRLMVEGATNREIAVELGLAVKTVEAHVHSILRKLRQPSRRAALVWARRHRI 205


>gi|313606801|gb|EFR83477.1| transcriptional regulatory protein DegU [Listeria monocytogenes FSL
           F2-208]
          Length = 127

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++ 
Sbjct: 64  LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 122


>gi|240144636|ref|ZP_04743237.1| transcriptional regulator, LuxR family [Roseburia intestinalis
           L1-82]
 gi|257203352|gb|EEV01637.1| transcriptional regulator, LuxR family [Roseburia intestinalis
           L1-82]
          Length = 261

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            H   +FEL+ RE E LT +  G T+ +IA  +GIS +TV  ++  I  K    TR+
Sbjct: 191 AHLAAEFELSEREKEALTCMDGGMTNAQIAENMGISLSTVKKHVYHIFEKVGVDTRA 247


>gi|218549230|ref|YP_002383021.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii
           ATCC 35469]
 gi|218356771|emb|CAQ89399.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia fergusonii ATCC 35469]
 gi|324113838|gb|EGC07812.1| luxR family protein regulatory protein [Escherichia fergusonii
           B253]
 gi|325497648|gb|EGC95507.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii
           ECD227]
          Length = 216

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 VLRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K + K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKISVKNRTQAVSWANDN 213


>gi|119898377|ref|YP_933590.1| putative transcriptional activator protein [Azoarcus sp. BH72]
 gi|119670790|emb|CAL94703.1| putative transcriptional activator protein [Azoarcus sp. BH72]
          Length = 251

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE++ L  + +G T+ +I  +L IS  TV N++  I+RK     R+ A+A  V   +
Sbjct: 183 LSGRELQVLGCMRDGLTNQQIGEVLEISALTVKNHVQRILRKLRAANRAQAVANGVAAGL 242

Query: 246 V 246
           +
Sbjct: 243 I 243


>gi|329939783|ref|ZP_08289084.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329301353|gb|EGG45248.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 208

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  +++GK++ EIA  + I+  TV +++  ++RK    TR+ A+A+A  + +
Sbjct: 133 LTPRESEVIVLLAQGKSNVEIAEKMSITTATVRSHVHHLLRKLGVGTRAQAVAFAYESGL 192

Query: 246 V 246
           +
Sbjct: 193 I 193


>gi|16080602|ref|NP_391429.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|154687664|ref|YP_001422825.1| DegU [Bacillus amyloliquefaciens FZB42]
 gi|221311500|ref|ZP_03593347.1| DegU [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315827|ref|ZP_03597632.1| DegU [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320742|ref|ZP_03602036.1| DegU [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221325027|ref|ZP_03606321.1| DegU [Bacillus subtilis subsp. subtilis str. SMY]
 gi|296330243|ref|ZP_06872724.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305676152|ref|YP_003867824.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|308175281|ref|YP_003921986.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|321313096|ref|YP_004205383.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|118438|sp|P13800|DEGU_BACSU RecName: Full=Transcriptional regulatory protein degU; AltName:
           Full=Protease production enhancer protein
 gi|143089|gb|AAA22545.1| iep protein [Bacillus subtilis]
 gi|143499|gb|AAA22733.1| degU protein (gtg start codon) [Bacillus subtilis]
 gi|143502|gb|AAA22735.1| protein kinase (put.); putative [Bacillus subtilis]
 gi|1762330|gb|AAC44938.1| transcriptional regulator of degradation enzymes [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|2636075|emb|CAB15566.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|126363001|emb|CAM35818.1| two-component response regulator DegU [Bacillus amyloliquefaciens
           FZB42]
 gi|154353515|gb|ABS75594.1| DegU [Bacillus amyloliquefaciens FZB42]
 gi|206967377|gb|ACI22669.1| two-component response regulator DegU [Bacillus subtilis]
 gi|219937642|emb|CAJ97429.1| transcriptional regulatory protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152511|gb|EFG93379.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414396|gb|ADM39515.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|307608145|emb|CBI44516.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|320019370|gb|ADV94356.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|328913615|gb|AEB65211.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens
           LL3]
          Length = 229

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 223


>gi|67924631|ref|ZP_00518043.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
 gi|67853530|gb|EAM48877.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
          Length = 90

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+GRE++ L  +S G T+ EIA  L IS+ TV+N+I++I+ KT T  R   + + ++
Sbjct: 12  LSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTDNRVELVRWGLQ 68


>gi|186681582|ref|YP_001864778.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464034|gb|ACC79835.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 226

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 7/81 (8%)

Query: 167 AYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AY  +  K+ ++VH      LT RE E L W+++G +++EIA  L ++  TV  ++ SI 
Sbjct: 150 AYSDSCLKACHEVH------LTEREQEVLYWLTQGASNEEIAKHLYVTVATVKAHLTSIF 203

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K    +R+ AI  A++  +V
Sbjct: 204 EKLKVTSRTQAIVAALKLGLV 224


>gi|322373351|ref|ZP_08047887.1| DNA-binding response regulator VraR [Streptococcus sp. C150]
 gi|321278393|gb|EFX55462.1| DNA-binding response regulator VraR [Streptococcus sp. C150]
          Length = 214

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N  K +D H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K   
Sbjct: 134 NKIKYHDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+ YA R+++V
Sbjct: 194 DDRTQAVVYAFRHHLV 209


>gi|288555323|ref|YP_003427258.1| two-component response regulator LiaR [Bacillus pseudofirmus OF4]
 gi|288546483|gb|ADC50366.1| LiaR two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 214

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  I  G+++ EIA  L I   TV  ++++I++K A + R+    YA R+ 
Sbjct: 152 ELTPRELEVLKLIGVGQSNQEIAESLFIGIKTVKTHVSNILQKLALEDRTQIAIYAHRHG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|228477324|ref|ZP_04061962.1| DNA-binding response regulator [Streptococcus salivarius SK126]
 gi|228251343|gb|EEK10514.1| DNA-binding response regulator [Streptococcus salivarius SK126]
          Length = 214

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N  K +D H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K   
Sbjct: 134 NKIKYHDSHPDLHDDLTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNV 193

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+ YA R+++V
Sbjct: 194 DDRTQAVVYAFRHHLV 209


>gi|119717886|ref|YP_924851.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119538547|gb|ABL83164.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 215

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G+D  LT RE + L  I  G +++E+A  L +S NTV + I S+ RK    +R+ A+A
Sbjct: 136 QLGRDVNLTPREQDVLGLIVAGCSNEELAAELYLSINTVKSLIRSVYRKLEVTSRAQAVA 195

Query: 239 YAV 241
           + V
Sbjct: 196 WGV 198


>gi|291486102|dbj|BAI87177.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 229

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKN 223


>gi|237730973|ref|ZP_04561454.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2]
 gi|226906512|gb|EEH92430.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2]
          Length = 216

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 124 ILRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNIEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|171915706|ref|ZP_02931176.1| DNA-binding response regulator [Verrucomicrobium spinosum DSM 4136]
          Length = 220

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D+ L+ RE E L  + +G    EIA  L +S +TV+ Y+  I  K    TR+GA+A A++
Sbjct: 157 DYGLSAREKEILDLMVKGLIKKEIADRLTLSVHTVDTYLRRIYEKLEVNTRTGAVAKALK 216

Query: 243 NNIV 246
             ++
Sbjct: 217 ERLI 220


>gi|320161029|ref|YP_004174253.1| putative two-component response regulator [Anaerolinea thermophila
           UNI-1]
 gi|319994882|dbj|BAJ63653.1| putative two-component response regulator [Anaerolinea thermophila
           UNI-1]
          Length = 356

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  +++G T+ EIA  L IS NTV  ++ SI  K    TRS A+A
Sbjct: 297 LTEREREVLLLLAQGLTNREIAEALVISNNTVKRHLKSIFSKLNIHTRSAAVA 349


>gi|311070055|ref|YP_003974978.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870572|gb|ADP34047.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 229

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVENHVSNILQKMNVNDRTQAVVVAIKN 223


>gi|226947735|ref|YP_002802826.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
 gi|226840805|gb|ACO83471.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 210

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE++ +  ISEG ++ EI+  L IS  TV NYI+SI+ KT  + R+    Y ++
Sbjct: 151 REIDVIEAISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQIAIYHLK 204


>gi|186473257|ref|YP_001860599.1| LuxR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195589|gb|ACC73553.1| transcriptional regulator, LuxR family [Burkholderia phymatum
           STM815]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  
Sbjct: 170 KLTPREQECLKWTARGKSTWEISHILNCSEAVVNFHLKNIRTKFGVNSRRAAAVIATQLG 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|288962660|ref|YP_003452954.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914926|dbj|BAI76410.1| two-component response regulator [Azospirillum sp. B510]
          Length = 229

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I++G T ++IA  LG+SR TV +YI +I RK    +RS A+  A+   +
Sbjct: 165 LTPRETDILWGIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAIGRKL 224

Query: 246 V 246
           +
Sbjct: 225 I 225


>gi|160899701|ref|YP_001565283.1| LuxR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365285|gb|ABX36898.1| transcriptional regulator, LuxR family [Delftia acidovorans SPH-1]
          Length = 180

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 29/60 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+    H     ELTGRE E    + EG TS EI   L IS  TV  Y A +MRK    T
Sbjct: 110 FEDLSAHRPVKAELTGREREVAARLLEGLTSKEIGRALAISHRTVEIYRARLMRKYGAST 169


>gi|31790492|emb|CAD56670.1| putative regulatory protein [Citrobacter sp. Fec2]
          Length = 216

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGASNIEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|83593514|ref|YP_427266.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576428|gb|ABC22979.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 239

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 157 DRLWEIGLLA-AYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           DRL  +GLL  ++   ++  +    H      LT RE ECL    EG T+ EIA  +  S
Sbjct: 147 DRLSSLGLLGQSFHDRVYPGFPAASHLCPVVHLTRRERECLALCGEGLTAKEIAYRIDRS 206

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAV 241
             TV  ++++  RK   + R  AIA A 
Sbjct: 207 VPTVVFHLSAATRKLGARNRFQAIARAA 234


>gi|329731507|gb|EGG67870.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 209

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|317125624|ref|YP_004099736.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589712|gb|ADU49009.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 237

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L  ++ G+ + EIA  L IS NTV N+I +I+ K    +R  A  YAVR  +
Sbjct: 173 LTERELGILRLVARGRLNREIARELFISENTVRNHIRNILDKLQMHSRMEAAMYAVRKRL 232

Query: 246 V 246
           +
Sbjct: 233 I 233


>gi|239943901|ref|ZP_04695838.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 260

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + + L+ REVE +  I+ G ++ +IA    IS  TV N+I  I  K  + TRS AIA+
Sbjct: 190 QQYGLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSATRSEAIAH 247


>gi|154487087|ref|ZP_02028494.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis
           L2-32]
 gi|154084950|gb|EDN83995.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis
           L2-32]
          Length = 249

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 188 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 247

Query: 245 IV 246
           +V
Sbjct: 248 LV 249


>gi|152966552|ref|YP_001362336.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151361069|gb|ABS04072.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 211

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G ++ EIA  L +S  TV  Y++ ++ K   + R  A+ YA R+ +
Sbjct: 150 LTPRELQVLRLIADGLSNVEIAATLSLSPETVKTYVSRLLTKLDLRDRVQAVVYAYRHGL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|328555254|gb|AEB25746.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
          Length = 229

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 223


>gi|297626956|ref|YP_003688719.1| Two-component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922721|emb|CBL57298.1| Two-component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 221

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  I+EG +  EIA +L IS  TV  + A+++ K   K R     YA+R
Sbjct: 156 DRLLTPREEEILKLIAEGHSGKEIAEMLFISPKTVERHRANLLEKLGMKDRLELTRYAIR 215

Query: 243 NNIV 246
             ++
Sbjct: 216 VGLI 219


>gi|209515006|ref|ZP_03263875.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209504632|gb|EEA04619.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 222

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G+ FE LT RE+E L  +++G  + EIA  L IS NTV  ++++I  K     R+ A+  
Sbjct: 154 GEPFEALTSREIEVLAMLADGLGNKEIARHLDISDNTVKFHLSAIFGKLGATNRTEAVML 213

Query: 240 AVRNNIV 246
            +R+  +
Sbjct: 214 GMRHGFI 220


>gi|52082083|ref|YP_080874.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52787473|ref|YP_093302.1| DegU [Bacillus licheniformis ATCC 14580]
 gi|319647951|ref|ZP_08002169.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2]
 gi|52005294|gb|AAU25236.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52349975|gb|AAU42609.1| DegU [Bacillus licheniformis ATCC 14580]
 gi|56310547|emb|CAE82205.1| two-component response regulator [Bacillus licheniformis]
 gi|106880136|emb|CAJ70739.1| two component response regulator [Bacillus licheniformis]
 gi|106880142|emb|CAJ70744.1| two component response regulator [Bacillus licheniformis]
 gi|317390292|gb|EFV71101.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2]
          Length = 229

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 223


>gi|83858980|ref|ZP_00952501.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83852427|gb|EAP90280.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 200

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 33/68 (48%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +  W     LT RE + L  + EGK++ EIA +L +S  TV NY+A   +K     R  A
Sbjct: 131 ETAWSAPVVLTARERDILRLVEEGKSNKEIARLLNLSPGTVRNYLAEATQKLGAANRIEA 190

Query: 237 IAYAVRNN 244
              A  N 
Sbjct: 191 FQIARENG 198


>gi|238027886|ref|YP_002912117.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877080|gb|ACR29413.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae
           BGR1]
          Length = 243

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+ F+ T +E E + W+ EGKT+ EI  IL +S  TV  ++ ++  K     R+ A+A  
Sbjct: 178 GEGFQFTRKESEVVKWVVEGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQAVAKV 237

Query: 241 VRNNIV 246
            R  ++
Sbjct: 238 SRLGLI 243


>gi|220920328|ref|YP_002495629.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219944934|gb|ACL55326.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 246

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE + L+W + G+T +EIA ILG+S  TV  ++ S   K   +  +  +  A+R  
Sbjct: 184 LSARERDVLSWAAMGRTREEIATILGVSHETVATHLKSARIKIGARNTTQTVVEALRKR 242


>gi|312621234|ref|YP_004022847.1| LuxR family transcriptional regulator [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201701|gb|ADQ45028.1| transcriptional regulator, LuxR family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 74

 Score = 43.9 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE E +  I++G ++ EI+  L IS  TV  YI  IM K   ++R    AY  +N
Sbjct: 10  ELTKREKEIIKLIAKGYSNKEISSFLNISEGTVKTYIKIIMLKLNARSRVEIAAYYFQN 68


>gi|31790500|emb|CAD56676.1| putative regularory protein [Enterobacter sakazakii]
          Length = 216

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGASNIEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|329961768|ref|ZP_08299799.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
 gi|328531509|gb|EGF58349.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
          Length = 186

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q + +     H G + EL+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K 
Sbjct: 105 QLHQYGHQHGHPG-EHELSAREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKL 163

Query: 229 ATKTRSGAIAYAVRNNIV 246
             K+ SG   YAV +  V
Sbjct: 164 GIKSVSGLTIYAVMHGYV 181


>gi|312864942|ref|ZP_07725172.1| response regulator receiver domain protein [Streptococcus downei
           F0415]
 gi|311099562|gb|EFQ57776.1| response regulator receiver domain protein [Streptococcus downei
           F0415]
          Length = 213

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K +D H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K   + 
Sbjct: 135 IKYHDQHPDLHDDLTARERDVLALLAKGYDNQTIADELFISLKTVKTHVSNILAKLNVED 194

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA ++N+V
Sbjct: 195 RTQAVVYAFQHNLV 208


>gi|229542987|ref|ZP_04432047.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
 gi|229327407|gb|EEN93082.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
          Length = 511

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+  L  +++G ++ E A +L +S  TV +Y++S+M++   + R+ A   A+R  
Sbjct: 449 QLSAREIHILQLLADGASTTEAAEMLHLSEYTVRDYVSSLMKRLHARNRTEAAVKAMRLG 508

Query: 245 IV 246
           ++
Sbjct: 509 LI 510


>gi|15615637|ref|NP_243941.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus halodurans C-125]
 gi|10175697|dbj|BAB06794.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus halodurans C-125]
          Length = 74

 Score = 43.9 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTKEIAEQLFISEKTVRNHISNTMQKLGVKGRSQAVIELIR 68


>gi|84684208|ref|ZP_01012110.1| two-component response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667961|gb|EAQ14429.1| two-component response regulator [Rhodobacterales bacterium
           HTCC2654]
          Length = 215

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE + L  IS G  + E+A  LG++ +TV  YI +I RK    +R+ A  +A R
Sbjct: 147 DGKLTDRETDVLALISRGLRNAEVARELGLAESTVAGYIKTIYRKLGISSRAEAAWHATR 206


>gi|330943805|gb|EGH46060.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 220

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR 
Sbjct: 154 FRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFFVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|229096760|ref|ZP_04227730.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228686602|gb|EEL40510.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 211

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV+
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVK 207


>gi|126653126|ref|ZP_01725255.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905]
 gi|126590131|gb|EAZ84256.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905]
          Length = 243

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           FE+T RE E L ++S+G  + EIA  L +S NT+  ++ ++ RK     R+  +A
Sbjct: 180 FEMTAREREVLNFVSKGLKNVEIAQQLIVSENTIKKHLQNLYRKFQVTNRTQLLA 234


>gi|78484550|ref|YP_390475.1| LuxR family transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78362836|gb|ABB40801.1| transcriptional regulator, LuxR family [Thiomicrospira crunogena
           XCL-2]
          Length = 205

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           L+ RE+E + WI +GK++ EIA  + IS  TV  ++ S++ K   K R
Sbjct: 143 LSAREIETMEWILQGKSNHEIAEQMAISERTVKAHVHSLLEKLDAKDR 190


>gi|37523311|ref|NP_926688.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35214315|dbj|BAC91683.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 221

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L+ ++EG  +  IA  L IS +TV  +I SI  K    +R+ A+   VR  +
Sbjct: 159 LTPREVEVLSMLAEGLGNKTIARRLQISEHTVKFHIGSIFGKLEATSRTEAVTLGVRRGL 218

Query: 246 V 246
           +
Sbjct: 219 I 219


>gi|317476127|ref|ZP_07935379.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907765|gb|EFV29467.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 255

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE+E L  + +G  S EIA  L IS NTVN++  +I++K      + AI +A R
Sbjct: 192 LTNRELEVLRLMKQGLLSKEIADTLQISINTVNSHRQNILQKLKANNSAEAINFAQR 248


>gi|302555756|ref|ZP_07308098.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302473374|gb|EFL36467.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 221

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG +S EIA +L IS  TV+ + A+++ K   + R     YA+R  +
Sbjct: 159 LTPREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIRAGL 218

Query: 246 V 246
           +
Sbjct: 219 I 219


>gi|256850848|ref|ZP_05556237.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260661059|ref|ZP_05861973.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|282934481|ref|ZP_06339736.1| two-component response regulator [Lactobacillus jensenii 208-1]
 gi|297205722|ref|ZP_06923117.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii
           JV-V16]
 gi|256615910|gb|EEU21098.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260547996|gb|EEX23972.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|281301428|gb|EFA93717.1| two-component response regulator [Lactobacillus jensenii 208-1]
 gi|297148848|gb|EFH29146.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii
           JV-V16]
          Length = 201

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE++ L  + +  T+ E+A  L +S  TV NYI+SI+ KT T +R  A+  A
Sbjct: 138 DNPLTNREMDILKMLEQVATTKELAQKLFLSEGTVRNYISSILSKTGTSSRLEALNLA 195


>gi|149914006|ref|ZP_01902538.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
 gi|149812290|gb|EDM72121.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
          Length = 214

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++ G    EIA  LGIS  TV N+I SI RK    T   A+A A +  
Sbjct: 154 LTEREAEILQAVARGYKRHEIAQHLGISAGTVGNHITSIYRKLEVSTNMEAVARASKKG 212


>gi|89095961|ref|ZP_01168855.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89089707|gb|EAR68814.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 227

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 164 LTRRECEVLQLLADGKSNRGIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 221


>gi|317506595|ref|ZP_07964387.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255104|gb|EFV14382.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 218

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  I+ G  + EIA  L IS  TV ++I  I  K   + R+ AI YA    
Sbjct: 154 KLTARELEVLRLIARGANNTEIAERLFISEVTVKSHIGRIFAKLGLRDRAAAIVYAYDQG 213

Query: 245 IV 246
           +V
Sbjct: 214 VV 215


>gi|312196323|ref|YP_004016384.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227659|gb|ADP80514.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 221

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  +  G ++ EIA  L +S +TV ++++S++ K   + R+ A+ +A  + 
Sbjct: 155 ELTERESETLRLLGRGLSNSEIAATLVVSEHTVKSHVSSVLTKLGLRDRAQAVVFAYESG 214

Query: 245 IV 246
           ++
Sbjct: 215 LI 216


>gi|228475909|ref|ZP_04060619.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           SK119]
 gi|314936099|ref|ZP_07843446.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
 gi|228270064|gb|EEK11534.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           SK119]
 gi|313654718|gb|EFS18463.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
          Length = 207

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +GKT+ +IA  L +S  TV  +++ I  K     R+ A  YA+ N 
Sbjct: 146 KLSKREMEVLKEMVKGKTNKDIAKSLFVSEKTVKTHVSHIFNKLQVSDRTQAAIYAIENK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|49081930|gb|AAT50365.1| PA1898 [synthetic construct]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAV 241
           LT RE E L W + GKT  EI +IL I + TV  +I + +RK  ++ K  +   AYA+
Sbjct: 176 LTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAVRKLNSSNKAEATMKAYAI 233


>gi|159902711|ref|YP_001550055.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9211]
 gi|159887887|gb|ABX08101.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9211]
          Length = 90

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           MF     + G+   L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K
Sbjct: 1   MFSGDFANSGQ-MSLSAREMEIIDLVADGLTNQEIAQRLTISKRTVDNHVSNMFTKTGSK 59

Query: 232 TRSGAIAYAV 241
            R   + +A+
Sbjct: 60  NRVALLNWAM 69


>gi|116621654|ref|YP_823810.1| LuxR family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224816|gb|ABJ83525.1| transcriptional regulator, LuxR family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 228

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE + L  I+ GK++ E A  LGIS  T +++ + I+ K      +  + YA+R 
Sbjct: 164 FALTERERQVLVLIAAGKSTKEAAAQLGISYKTADSHRSRILEKLGVHETASMVRYAIRA 223

Query: 244 NIV 246
            ++
Sbjct: 224 GLI 226


>gi|330808400|ref|YP_004352862.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376508|gb|AEA67858.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 219

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT R++E L  I  GK++ EIA  L +S  TV  + A IM++      +G + +A
Sbjct: 150 ARAHNLTARQLEILRLIVRGKSTREIANGLNLSIKTVETHRAQIMKRLQIHDVAGLVLFA 209

Query: 241 VRNNIV 246
           VR  I+
Sbjct: 210 VREQII 215


>gi|257482088|ref|ZP_05636129.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011441|gb|EGH91497.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 209

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+  G    LT R+ E L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS A
Sbjct: 138 DLDSGAISHLTVRQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRSAA 197

Query: 237 IA 238
            A
Sbjct: 198 AA 199


>gi|46190453|ref|ZP_00121483.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bifidobacterium longum
           DJO10A]
          Length = 64

 Score = 43.5 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 3   ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 62

Query: 245 IV 246
           +V
Sbjct: 63  LV 64


>gi|15924874|ref|NP_372408.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927458|ref|NP_374991.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283553|ref|NP_646641.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49484125|ref|YP_041349.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486702|ref|YP_043923.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|148268356|ref|YP_001247299.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394418|ref|YP_001317093.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980200|ref|YP_001442459.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253314946|ref|ZP_04838159.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253729642|ref|ZP_04863807.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|255006672|ref|ZP_05145273.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257426016|ref|ZP_05602438.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428689|ref|ZP_05605084.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431299|ref|ZP_05607675.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434017|ref|ZP_05610368.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436921|ref|ZP_05612963.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793762|ref|ZP_05642741.1| two-component system response regulator [Staphylococcus aureus
           A9781]
 gi|258408904|ref|ZP_05681186.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|258420992|ref|ZP_05683923.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|258422961|ref|ZP_05685860.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|258430036|ref|ZP_05688406.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|258443446|ref|ZP_05691788.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|258445304|ref|ZP_05693495.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258447868|ref|ZP_05696002.1| response regulator protein vraR [Staphylococcus aureus A6224]
 gi|258453301|ref|ZP_05701286.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269203536|ref|YP_003282805.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894549|ref|ZP_06302777.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8117]
 gi|282904515|ref|ZP_06312400.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906287|ref|ZP_06314139.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909203|ref|ZP_06317019.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911509|ref|ZP_06319309.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914681|ref|ZP_06322466.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282917229|ref|ZP_06324984.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282919718|ref|ZP_06327450.1| two component transcriptional regulator VraR [Staphylococcus aureus
           subsp. aureus C427]
 gi|282925122|ref|ZP_06332782.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282928056|ref|ZP_06335663.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A10102]
 gi|283771033|ref|ZP_06343924.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus H19]
 gi|283958645|ref|ZP_06376091.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293507758|ref|ZP_06667600.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510776|ref|ZP_06669478.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus M809]
 gi|293539315|ref|ZP_06671994.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407262|ref|ZP_06817061.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8819]
 gi|295428465|ref|ZP_06821092.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275883|ref|ZP_06858390.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297208909|ref|ZP_06925314.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297246211|ref|ZP_06930062.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8796]
 gi|297590064|ref|ZP_06948704.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300913033|ref|ZP_07130471.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|81696298|sp|Q6G850|VRAR_STAAS RecName: Full=Response regulator protein vraR
 gi|81696461|sp|Q6GFH3|VRAR_STAAR RecName: Full=Response regulator protein vraR
 gi|81704309|sp|Q7A0I0|VRAR_STAAW RecName: Full=Response regulator protein vraR
 gi|81704831|sp|Q7A2Q1|VRAR_STAAM RecName: Full=Response regulator protein vraR
 gi|81705432|sp|Q7A4R9|VRAR_STAAN RecName: Full=Response regulator protein vraR
 gi|90116383|sp|P0C0Z1|VRAR_STAA1 RecName: Full=Response regulator protein vraR
 gi|9501772|dbj|BAB03325.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|13701677|dbj|BAB42970.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus N315]
 gi|14247656|dbj|BAB58046.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|16151628|dbj|BAB69827.1| response regulator [Staphylococcus aureus]
 gi|21204994|dbj|BAB95689.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49242254|emb|CAG40961.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49245145|emb|CAG43611.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147741425|gb|ABQ49723.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946870|gb|ABR52806.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722335|dbj|BAF78752.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253726638|gb|EES95367.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|257271159|gb|EEV03316.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274333|gb|EEV05845.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277948|gb|EEV08604.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280943|gb|EEV11087.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283710|gb|EEV13835.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787734|gb|EEV26074.1| two-component system response regulator [Staphylococcus aureus
           A9781]
 gi|257840351|gb|EEV64813.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|257842940|gb|EEV67358.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|257846748|gb|EEV70763.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|257849630|gb|EEV73598.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|257851331|gb|EEV75271.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|257855822|gb|EEV78746.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257858800|gb|EEV81669.1| response regulator protein vraR [Staphylococcus aureus A6224]
 gi|257864509|gb|EEV87252.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262075826|gb|ACY11799.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282313080|gb|EFB43478.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316356|gb|EFB46733.1| two component transcriptional regulator VraR [Staphylococcus aureus
           subsp. aureus C427]
 gi|282318856|gb|EFB49211.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282321395|gb|EFB51721.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324518|gb|EFB54830.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326771|gb|EFB57068.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330484|gb|EFB60001.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590120|gb|EFB95201.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A10102]
 gi|282595071|gb|EFC00038.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763036|gb|EFC03168.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8117]
 gi|283459627|gb|EFC06718.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus H19]
 gi|283471154|emb|CAQ50365.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283789685|gb|EFC28507.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817564|gb|ADC38051.1| Two component transcriptional regulator VraR, LuxR family
           [Staphylococcus aureus 04-02981]
 gi|290919850|gb|EFD96919.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094821|gb|EFE25089.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466407|gb|EFF08931.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus M809]
 gi|294967837|gb|EFG43867.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8819]
 gi|295127447|gb|EFG57086.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886470|gb|EFH25398.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297176918|gb|EFH36175.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8796]
 gi|297577192|gb|EFH95906.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300885811|gb|EFK81018.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302333549|gb|ADL23742.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312437651|gb|ADQ76722.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312830256|emb|CBX35098.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129309|gb|EFT85303.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS03]
 gi|315193411|gb|EFU23808.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS00]
 gi|329724817|gb|EGG61321.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 209

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|327404698|ref|YP_004345536.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327320206|gb|AEA44698.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 171 NMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           ++ K     + KD E   L+ RE+E +  I+   ++++IA  L IS+ TV  +  +I +K
Sbjct: 137 SLMKRQKKEFRKDLEVAQLSNREIEIIRLIALEYSNEKIAEELFISKRTVETHRKNINQK 196

Query: 228 TATKTRSGAIAYAVRNNIV 246
           T  KT  G I +A+RN +V
Sbjct: 197 TNIKTVVGLIKFAIRNELV 215


>gi|297623722|ref|YP_003705156.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297164902|gb|ADI14613.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 226

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I  G+++ EIA  LG+S  TV  +++ ++ K    +R+ A  +A++  +
Sbjct: 163 LTARETDILRHIGRGESNKEIAAALGLSELTVKTHVSRLLSKLGLASRTQAALFALKEGL 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|302533688|ref|ZP_07286030.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442583|gb|EFL14399.1| two-component system response regulator [Streptomyces sp. C]
          Length = 219

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +
Sbjct: 152 GGRPGSLTDREREVLGLIADGRSNREIARTLVLSEKTVKTHVSNILMKLDLSDRTQAALW 211

Query: 240 AVRNNI 245
           AVR+ I
Sbjct: 212 AVRHGI 217


>gi|77459645|ref|YP_349152.1| sensor protein [Pseudomonas fluorescens Pf0-1]
 gi|77383648|gb|ABA75161.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 496

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE + L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A
Sbjct: 427 DLTARERDVLALICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIVWA 482


>gi|16078980|ref|NP_389801.1| two-component response regulator DesK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309818|ref|ZP_03591665.1| hypothetical protein Bsubs1_10596 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314140|ref|ZP_03595945.1| hypothetical protein BsubsN3_10527 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319062|ref|ZP_03600356.1| hypothetical protein BsubsJ_10443 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323336|ref|ZP_03604630.1| hypothetical protein BsubsS_10562 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321311560|ref|YP_004203847.1| two-component response regulator DesK [Bacillus subtilis BSn5]
 gi|81815765|sp|O34723|DESR_BACSU RecName: Full=Transcriptional regulatory protein desR
 gi|2619014|gb|AAB84438.1| sensor regulator [Bacillus subtilis]
 gi|2634313|emb|CAB13812.1| two-component response regulator [DesK] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484510|dbj|BAI85585.1| hypothetical protein BSNT_03128 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320017834|gb|ADV92820.1| two-component response regulator (DesK) [Bacillus subtilis BSn5]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI
Sbjct: 138 LTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAI 189


>gi|116254615|ref|YP_770451.1| putative transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|417645|sp|Q03316|RHIR_RHILV RecName: Full=Regulatory protein rhiR
 gi|7259800|gb|AAA26360.2| rhiR [Rhizobium leguminosarum]
 gi|115259263|emb|CAK10396.1| Putative transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 247

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 11/91 (12%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE--------LTGREVECLTWISEGKTSDEIAVILGISRN 215
           L+AAY  ++ ++     G D          +T RE E + W + GKT+ EIA ILG S  
Sbjct: 159 LMAAYAHSLLRA---QIGNDASRKIQALPMITTREREIIHWCAAGKTAIEIATILGRSHR 215

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ N I +I RK         IA + R  I+
Sbjct: 216 TIQNVILNIQRKLNVVNTPQMIAESFRLRII 246


>gi|332709752|ref|ZP_08429711.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332351579|gb|EGJ31160.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 89

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 40/57 (70%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT+T  R G + +A++
Sbjct: 12  LSYRELQIIEHVAAGLTNLEIAQELAISKRTVDNHISNILTKTSTDNRVGLVRWALK 68


>gi|229102861|ref|ZP_04233555.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228680534|gb|EEL34717.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 211

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV+
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVK 207


>gi|255036722|ref|YP_003087343.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254949478|gb|ACT94178.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 219

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I +G ++ EI   L IS  TV  +   ++ KT TK+ + A+A+A +N +
Sbjct: 158 LSSREKEVLQLICDGLSTTEIGDKLFISVRTVEGHRLRVLEKTGTKSTAAAVAFAYKNQL 217

Query: 246 V 246
           +
Sbjct: 218 L 218


>gi|87309494|ref|ZP_01091629.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
 gi|87287802|gb|EAQ79701.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
          Length = 210

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  ++ G T+ EIA  L IS  TV  ++  I+RK     R+ A  +AVR
Sbjct: 147 EVPLTQRESEVLRQLALGLTNKEIAQALHISYETVKEHVQHILRKVGVSDRTQAAVWAVR 206

Query: 243 NNIV 246
             +V
Sbjct: 207 KGLV 210


>gi|300869019|ref|ZP_07113622.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300332999|emb|CBN58814.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 228

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ GK++ EIA IL I+  TV  ++ +I++K   + R+ A   A++  +
Sbjct: 159 LTKREQEILALVAAGKSNQEIAQILYIASGTVRVHVHAILQKLEVRDRTQAAVVAIQKGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|289641792|ref|ZP_06473950.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508436|gb|EFD29377.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 402

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           R    G+   +   +   +D  W  D  LT RE++ L  ++ G T+  IA  L IS  TV
Sbjct: 312 RFGAYGMNHGFAQPVRPFHDTPWPADSRLTRREIDVLRLMAAGNTNARIADRLIISEGTV 371

Query: 218 NNYIASIMRKTATKTRSGAIA 238
            +++  I+RK    +R+ A++
Sbjct: 372 KSHVKHILRKLNAASRTEAVS 392


>gi|312880287|ref|ZP_07740087.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
 gi|310783578|gb|EFQ23976.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
          Length = 226

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE E L W+S+G ++ EIA+ + +S  TV N+++ ++RK     R+ A   A
Sbjct: 151 DLTPREREVLYWLSQGFSNAEIALKMVLSEKTVKNHVSHVLRKLELNDRTQAAVLA 206


>gi|319762877|ref|YP_004126814.1| regulatory protein luxr [Alicycliphilus denitrificans BC]
 gi|330824956|ref|YP_004388259.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317117438|gb|ADU99926.1| regulatory protein LuxR [Alicycliphilus denitrificans BC]
 gi|329310328|gb|AEB84743.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 264

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+ +A
Sbjct: 204 LSQREKEVLRMVASGYTSAEIGTRLLISSLTVNTHIKNIYRKLQVRTRAQAVRFA 258


>gi|119715573|ref|YP_922538.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119536234|gb|ABL80851.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 188

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    LT REVE L  I++G ++ EIA  L +S N+V  YI S   K    +R+ A+A+
Sbjct: 113 GASVALTAREVEVLALITQGMSNPEIAEHLYLSINSVKTYIRSAYAKIGVTSRARAVAW 171


>gi|283781707|ref|YP_003372462.1| two component LuxR family transcriptional regulator [Pirellula
           staleyi DSM 6068]
 gi|283440160|gb|ADB18602.1| two component transcriptional regulator, LuxR family [Pirellula
           staleyi DSM 6068]
          Length = 211

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +  G+T+ +IA +LGIS  TV  ++  ++ K     R+ A  +AVR  +
Sbjct: 151 LTQREGEVLKHVCSGRTNQQIAELLGISYETVKEHVQHLLEKIGVADRTQAAIWAVRAGL 210


>gi|229489178|ref|ZP_04383044.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121]
 gi|229324682|gb|EEN90437.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121]
          Length = 484

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E LT++    T+DEIA  LGI+  TV  +I SI RK     R  A+  A
Sbjct: 407 LTEREKEILTFLRTTMTADEIAAHLGIAYPTVKTHIRSIYRKLGVTKRRAAVQAA 461


>gi|239828352|ref|YP_002950976.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808645|gb|ACS25710.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. WCH70]
          Length = 225

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N  +  +V W     LT RE E L  +++GK++  I   L IS  TV N++++I++K   
Sbjct: 148 NKERKREVRWPLHL-LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNV 206

Query: 231 KTRSGAIAYAVRN 243
             R+ A+  A++N
Sbjct: 207 NDRTQAVVVAIKN 219


>gi|303242530|ref|ZP_07329009.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302589948|gb|EFL59717.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 214

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE++ +  + +GK++++IA  L ++  +V N ++S++RK   K R     +AVRN 
Sbjct: 153 KLNEREIKVIQLVVDGKSNNQIAEELFLTEGSVRNIVSSLLRKLDLKDRVQLAVFAVRNK 212

Query: 245 IV 246
           +V
Sbjct: 213 LV 214


>gi|291301217|ref|YP_003512495.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570437|gb|ADD43402.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 235

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G+++ EIA  L ++  TV  +++S+ RK     R+ A  YAV + +
Sbjct: 147 LTAREREVLALVAAGRSNREIAKQLSVAEKTVKTHLSSLFRKLGVADRTQAALYAVTHGM 206


>gi|169825087|ref|YP_001692698.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|167831892|dbj|BAG08808.1| two-component response regulator [Finegoldia magna ATCC 29328]
          Length = 208

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            K  ELT RE+E L  ++ G  +D+IA  LGIS NTV  +I  ++ KT   +R+
Sbjct: 139 AKSTELTPREIEVLRLLTTGAGNDQIAEELGISLNTVKTHIKHMLDKTEFTSRT 192


>gi|257485988|ref|ZP_05640029.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289624166|ref|ZP_06457120.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648606|ref|ZP_06479949.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298486059|ref|ZP_07004129.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159407|gb|EFI00458.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320327444|gb|EFW83457.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330869356|gb|EGH04065.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330877322|gb|EGH11471.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330988652|gb|EGH86755.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331010302|gb|EGH90358.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 89

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   E+T RE E L  + +G T+ EIA  L IS  TV ++++S++RK+  KTR   +A  
Sbjct: 5   GSSMEVTMREQEVLGLLLQGCTNKEIARQLRISDYTVRDHVSSLLRKSRVKTRVELMARC 64

Query: 241 V 241
           V
Sbjct: 65  V 65


>gi|271969982|ref|YP_003344178.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513157|gb|ACZ91435.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 215

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E +  I+ G+T+ EIA  L IS +TV  Y++ IM K   ++R   +A+A
Sbjct: 152 LTARETEIVQAIARGRTNQEIADELFISLSTVKGYVSGIMAKLGVRSRVKIVAWA 206


>gi|291298613|ref|YP_003509891.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567833|gb|ADD40798.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 207

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    LT RE++ L  +SEGK++ EI   L +S +T+  +   + RK   + R+ A+A
Sbjct: 139 QRGGPVGLTEREMQVLRGMSEGKSNAEIGRDLFVSEDTIKTHARRLFRKLGARDRAHAVA 198

Query: 239 YAVRNNIV 246
              R  IV
Sbjct: 199 EGFRGGIV 206


>gi|229115740|ref|ZP_04245143.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228667725|gb|EEL23164.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 211

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV+
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVK 207


>gi|169826466|ref|YP_001696624.1| hypothetical protein Bsph_0878 [Lysinibacillus sphaericus C3-41]
 gi|168990954|gb|ACA38494.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 377

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHW 180
           P    D  +  LTFD    ++G      K  ++L + + + +GL  +      K   V  
Sbjct: 260 PIIQQDQLFGWLTFD----QLGEEFDCTKSELLLLEEVGKRLGLFLSR-----KGEKVEK 310

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  LT RE   L  ++EG  + +I  +L +S +TV +Y++S+M K   K R+  +A A
Sbjct: 311 CTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASA 370

Query: 241 VR 242
            R
Sbjct: 371 FR 372


>gi|325678873|ref|ZP_08158471.1| transcriptional regulator, LuxR family [Ruminococcus albus 8]
 gi|324109377|gb|EGC03595.1| transcriptional regulator, LuxR family [Ruminococcus albus 8]
          Length = 209

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           E T RE+E L  ++ G T+ ++A  LGIS NTV +++ S++ KT  ++R+
Sbjct: 144 EFTERELEILRVVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRT 193


>gi|284009120|emb|CBA76124.1| LuxR family transcriptional regulatory protein [Arsenophonus
           nasoniae]
          Length = 243

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L W S GKT  EI  IL IS  TV  +I ++++K        AI+ +V+ N++
Sbjct: 175 RESEVLYWCSIGKTYSEIGTILNISTYTVKFHIGNVVKKLGVINAKHAISLSVKLNLI 232


>gi|167765400|ref|ZP_02437513.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC
           43183]
 gi|167697028|gb|EDS13607.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC
           43183]
          Length = 256

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  I +G  S EIA  LG+S +TVN +  +++RK   +    AI    +  
Sbjct: 194 ELTNREIEILQLIKQGLLSKEIAYTLGVSIHTVNIHRQNLLRKLGVQNSIEAINIGSKTG 253

Query: 245 IV 246
           ++
Sbjct: 254 LI 255


>gi|52081161|ref|YP_079952.1| two-component response regulator responsible for cold induction of
           the des gene [Bacillus licheniformis ATCC 14580]
 gi|52786544|ref|YP_092373.1| YocG [Bacillus licheniformis ATCC 14580]
 gi|52004372|gb|AAU24314.1| two-component response regulator responsible for cold induction of
           the des gene [Bacillus licheniformis ATCC 14580]
 gi|52349046|gb|AAU41680.1| YocG [Bacillus licheniformis ATCC 14580]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI
Sbjct: 138 LTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAI 189


>gi|297622897|ref|YP_003704331.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164077|gb|ADI13788.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 508

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ GK+++ IA  LG++  TV NYI+++  K   ++R+ A+ +A    +
Sbjct: 447 LSKRERQVLERLARGKSNEAIAAELGLATQTVRNYISAVYDKLGVRSRAEAVVWARERGV 506

Query: 246 V 246
           +
Sbjct: 507 I 507


>gi|296330481|ref|ZP_06872960.1| two-component response regulator (DesK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674733|ref|YP_003866405.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152378|gb|EFG93248.1| two-component response regulator (DesK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412977|gb|ADM38096.1| two-component response regulator (paired with DesK) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI
Sbjct: 138 LTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAI 189


>gi|239638058|ref|ZP_04679017.1| response regulator protein VraR [Staphylococcus warneri L37603]
 gi|239596341|gb|EEQ78879.1| response regulator protein VraR [Staphylococcus warneri L37603]
          Length = 209

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTDREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|229489605|ref|ZP_04383468.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229323702|gb|EEN89460.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 230

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT REVE L  ++ G ++ EIA    +S  TV  ++  ++ KT ++ R  A+ +A +  
Sbjct: 159 ELTPREVEVLEAMAYGLSNSEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIG 218

Query: 245 IV 246
           +V
Sbjct: 219 LV 220


>gi|226305629|ref|YP_002765589.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184746|dbj|BAH32850.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 226

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT REVE L  ++ G ++ EIA    +S  TV  ++  ++ KT ++ R  A+ +A +  
Sbjct: 155 ELTPREVEVLEAMAYGLSNSEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIG 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|319948180|ref|ZP_08022340.1| putative two-component system response regulator [Dietzia cinnamea
           P4]
 gi|319438164|gb|EFV93124.1| putative two-component system response regulator [Dietzia cinnamea
           P4]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I+ G+++ EIA  L IS  TV  ++  +++K + + R+  + YA  N +
Sbjct: 157 LTPREREMVEQIATGRSNAEIATALFISEETVKTHVRRVLQKLSLRDRAQVVVYAYENGV 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|260461687|ref|ZP_05809933.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319785241|ref|YP_004144717.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032328|gb|EEW33593.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317171129|gb|ADV14667.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 241

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 34/53 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE ECL W ++GK++ +I+ IL +S+ TV  ++ +   K   +T + A+A
Sbjct: 179 LTPREFECLKWAADGKSAWDISQILSVSKRTVTFHLENAKAKLGVRTINQAVA 231


>gi|229592722|ref|YP_002874841.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229364588|emb|CAY52478.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 236

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W + GKT+ +IA IL +S  TV  +I+S  +K     +  A+  A +  
Sbjct: 175 KLTPRETEILKWSAMGKTASDIATILCLSERTVGFHISSTFKKLGVNNKIAAVLCASKAG 234

Query: 245 I 245
           +
Sbjct: 235 L 235


>gi|228476314|ref|ZP_04061015.1| response regulator protein VraR [Staphylococcus hominis SK119]
 gi|314936061|ref|ZP_07843410.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269597|gb|EEK11103.1| response regulator protein VraR [Staphylococcus hominis SK119]
 gi|313655878|gb|EFS19621.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 209

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|167763457|ref|ZP_02435584.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC
           43183]
 gi|167698751|gb|EDS15330.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC
           43183]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +A M +S +   G+  ELT RE++ L  ISEGK + EIA  L +S NTV+ +   +M K 
Sbjct: 138 RAQMRRSDE---GRREELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHLMDKL 194

Query: 229 ATKTRSGAIAYAVRNNIV 246
             +  +  I  A+   I+
Sbjct: 195 DARNVADLIMTAISKGII 212


>gi|319644871|ref|ZP_07999104.1| sensor regulator [Bacillus sp. BT1B_CT2]
 gi|317392680|gb|EFV73474.1| sensor regulator [Bacillus sp. BT1B_CT2]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI
Sbjct: 138 LTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAI 189


>gi|303238514|ref|ZP_07325048.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593912|gb|EFL63626.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 215

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E +  + +GK + +IA  L IS  TV N I+ I++K   + R     YAV+N+I
Sbjct: 155 LTPREIEIINLVVDGKDNRDIANSLFISEGTVRNTISLILKKLNLRDRIQLAVYAVKNDI 214


>gi|284046422|ref|YP_003396762.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950643|gb|ADB53387.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 218

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  I+ G T+ EIA  L +S  TV ++ A I RK     RS  + YA+   
Sbjct: 151 ELTARELEVLRLIARGLTNREIAERLFLSVRTVESHRARIQRKLGRSRRSDLVDYALERG 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|291612623|ref|YP_003522780.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291582735|gb|ADE10393.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 215

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT+I++G +  EIA +L +S +T+  ++ SI  K    +R+ A   A+R  +
Sbjct: 153 LTAREEEVLTYIAKGLSRTEIAQLLSVSAHTIIAHVRSIYSKLDISSRAEATVEAIRRGL 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|258510399|ref|YP_003183833.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477125|gb|ACV57444.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 224

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +++G T+ E+A  L IS  TV  +   IMR+    +R+  + YA +N +
Sbjct: 150 LSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQHIMRRIGLHSRAALVRYAYQNGL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|261339343|ref|ZP_05967201.1| putative csgAB operon transcriptional regulatory protein
           [Enterobacter cancerogenus ATCC 35316]
 gi|288318141|gb|EFC57079.1| putative csgAB operon transcriptional regulatory protein
           [Enterobacter cancerogenus ATCC 35316]
          Length = 216

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGASNIEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|229918078|ref|YP_002886724.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
 gi|229469507|gb|ACQ71279.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
          Length = 211

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EGK++  IA  L IS  TV  ++++I+ K     R+ A+ YA ++N+
Sbjct: 148 LTAREREILQLMAEGKSNQVIADELFISLKTVKTHVSNILTKLDVYDRTQAVVYAFQHNL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|171911323|ref|ZP_02926793.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 242

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE++ L  + +G T  + A  +GI   T + YI S+  K   ++R GAIA AV+ 
Sbjct: 180 YGLTPRELQILELLVQGHTIKQAAGEMGIGYYTADEYIRSVYEKLQVRSRGGAIAKAVKE 239

Query: 244 NIV 246
            +V
Sbjct: 240 RLV 242


>gi|300715701|ref|YP_003740504.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661]
 gi|299061537|emb|CAX58651.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661]
          Length = 247

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E + W S GK+  EIA+ILGI   TV  +I + ++K        AI   +  N+
Sbjct: 179 FTSRENEIIYWASVGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAIRLGIELNL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|271967312|ref|YP_003341508.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510487|gb|ACZ88765.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I+EG ++ EIA  L IS  TV+ + A+I++K   + R     YA+R  +
Sbjct: 156 LTPREEEVVKLIAEGNSAKEIAETLVISVKTVDRHRANILQKLGMRDRLDLTRYAIRAGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|213029272|ref|ZP_03343719.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 48

 Score = 43.5 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA
Sbjct: 1   MKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYA 47


>gi|87123599|ref|ZP_01079450.1| possible transcriptional regulator [Synechococcus sp. RS9917]
 gi|86169319|gb|EAQ70575.1| possible transcriptional regulator [Synechococcus sp. RS9917]
          Length = 92

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT  K R   + +A+
Sbjct: 12  IDLSTREIEIVELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGAKNRVALLNWAM 69


>gi|332877914|ref|ZP_08445652.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684209|gb|EGJ57068.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 205

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 171 NMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           NM + Y  +   G    L+ RE+E LT I  G T+ EIA  L IS  TV ++  +IM K 
Sbjct: 123 NMPRPYMTNTSPGDPNGLSTREIEVLTLIVRGLTNKEIADRLCISTTTVISHRKNIMEKL 182

Query: 229 ATKTRSGAIAYAVRNNIV 246
             ++ SG   YAV N  +
Sbjct: 183 NVRSVSGLTIYAVMNGYI 200


>gi|302545866|ref|ZP_07298208.1| two-component system response regulator TcsR2 [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463484|gb|EFL26577.1| two-component system response regulator TcsR2 [Streptomyces
           himastatinicus ATCC 53653]
          Length = 208

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  LT RE+  L+  ++G +  EIA  L +S  T+ NY+A+I RKT  + R  AI
Sbjct: 145 EIPLTERELGVLSLAADGASIAEIARTLHLSNGTIRNYLAAITRKTGARNRVDAI 199


>gi|295394642|ref|ZP_06804861.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972535|gb|EFG48391.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 228

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y   T D+++IR  ++ +     +   D       + A +A      D++      LT
Sbjct: 106 NGYLIKTSDISQIRAAILSIASGTAVFSPDAAGFSRAVVANEAPGQTPADLYG-----LT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            RE   LT +  G+++ EIA  LGIS  TV  +I SIM+K   ++R
Sbjct: 161 EREEAILTQLCRGQSNYEIARFLGISEGTVKVHITSIMKKANVRSR 206


>gi|288574154|ref|ZP_06392511.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569895|gb|EFC91452.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 214

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 178 VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +H   D E LT RE E L  ++EG T+ E+A  L +S  TV  +   IM K   K  +  
Sbjct: 141 LHDPDDIEPLTPREKEILMLLAEGNTNREVAERLHLSIKTVGTHRQHIMNKLKLKNLADL 200

Query: 237 IAYAVRNNIV 246
           + YA+RN ++
Sbjct: 201 VKYAIRNGMI 210


>gi|312972929|ref|ZP_07787102.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
 gi|310332871|gb|EFQ00085.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
          Length = 123

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 55  YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 114

Query: 240 AVR 242
           A+R
Sbjct: 115 ALR 117


>gi|297626683|ref|YP_003688446.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922448|emb|CBL57021.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 177 DVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +V  G D EL   T REVE L  ++ G ++ EIA  L +S  TV  ++++++ K   + R
Sbjct: 144 EVTPGADAELARLTDREVEVLRALARGLSNAEIAAELFVSEATVKTHVSNVLSKLGLRDR 203

Query: 234 SGAIAYAVRNNIV 246
             A+A+A ++ +V
Sbjct: 204 VQAVAHAYQHGLV 216


>gi|229819214|ref|YP_002880740.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229565127|gb|ACQ78978.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 209

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GREV+ L  +++G+T+ + A +LG++  TV  ++  +  K     R+ A+A   R+ +
Sbjct: 148 LSGREVDVLRLVADGRTNRQAAQLLGVTEATVKTHLLHVYAKLGVPDRAAAVAAGYRSGL 207

Query: 246 V 246
           +
Sbjct: 208 L 208


>gi|294102345|ref|YP_003554203.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617325|gb|ADE57479.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 231

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 37/59 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +ELT RE E L W+++G ++ E+A  + +S  TV N+++ +++K   + R+ A   A R
Sbjct: 150 YELTPREKEILYWLAQGLSNSEVASKMVLSEKTVKNHVSHVLKKLDLRDRTQAAILAWR 208


>gi|284028348|ref|YP_003378279.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283807641|gb|ADB29480.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 210

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G+++ E+A  L +S  TV ++++ I  K    TR+ A+A A+  +I
Sbjct: 145 LTEREVEILGLLATGQSNRELAKRLFVSEATVKSHLSHIYTKLGVDTRAAAVARAIEQHI 204

Query: 246 V 246
           +
Sbjct: 205 I 205


>gi|187777587|ref|ZP_02994060.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC
           15579]
 gi|187774515|gb|EDU38317.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC
           15579]
          Length = 218

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE++ +  ISEG ++ EI+  L IS  TV NYI+SI+ KT  + R+    Y ++
Sbjct: 159 REIDVIEAISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQIAIYHLK 212


>gi|91783993|ref|YP_559199.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91687947|gb|ABE31147.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 213

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG ++  I  +L IS +TV  +I +++ K   + R+ A+A+A R+ +
Sbjct: 152 LTEREMDVLRALAEGSSNGRIGKMLNISESTVKTHIGNVLAKLDLRDRTQAVAFAWRHGL 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|84496768|ref|ZP_00995622.1| putative respose regulatory protein [Janibacter sp. HTCC2649]
 gi|84383536|gb|EAP99417.1| putative respose regulatory protein [Janibacter sp. HTCC2649]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  + EG ++DEIA  L ISR TV  ++  +  K    +R+GA+A A R  +
Sbjct: 156 LSEREREVLVLVGEGLSNDEIAKQLFISRATVKTHLRHLFGKLEADSRTGAVATARRLGL 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|329954461|ref|ZP_08295552.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
 gi|328527429|gb|EGF54426.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +A M +S +   G+  ELT RE++ L  ISEGK + EIA  L +S NTV+ +   +M K 
Sbjct: 138 RAQMKRSDE---GRREELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHLMDKL 194

Query: 229 ATKTRSGAIAYAVRNNIV 246
             +  +  I  A+   I+
Sbjct: 195 DARNVADLIMTAISKGII 212


>gi|311030273|ref|ZP_07708363.1| two-component response regulator DesR [Bacillus sp. m3-13]
 gi|311032980|ref|ZP_07711070.1| two-component response regulator DesR [Bacillus sp. m3-13]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +G++  LT RE   L  +++GK + EIA  L I   TV NYI++I+ K   K R  A
Sbjct: 129 DDFYGEENPLTEREKAVLELVADGKNTQEIADELRIKSGTVRNYISNILDKLEVKNRIEA 188

Query: 237 I 237
           I
Sbjct: 189 I 189


>gi|290957669|ref|YP_003488851.1| hypothetical protein SCAB_31981 [Streptomyces scabiei 87.22]
 gi|260647195|emb|CBG70298.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 163

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ +E E L  IS+G+T+ E A  +G+S +TV  YI  I  K  T  R+G +  A R+ 
Sbjct: 12  LSPQEREALLGISQGRTTAETACDMGVSNSTVKTYILRIGGKLGTSERAGMVDLAYRHG 70


>gi|320007212|gb|ADW02062.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 223

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  +T RE E L  ++EG +S EIA +L IS  TV  + A++++K   + R     YA+R
Sbjct: 158 DRAITEREEEILKLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIR 217

Query: 243 NNIV 246
             ++
Sbjct: 218 AGLI 221


>gi|150018604|ref|YP_001310858.1| two component LuxR family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905069|gb|ABR35902.1| two component transcriptional regulator, LuxR family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 220

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE+E    +S+G T+ +IA  L IS  TV NYI++I  KT  K R+
Sbjct: 161 LTEREIEICQLLSDGYTNSQIAEFLYISEGTVKNYISTIYDKTEIKDRT 209


>gi|116621985|ref|YP_824141.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225147|gb|ABJ83856.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 216

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+EG+++ E+A +L IS  TV  + A I++K    +    I YAVR  I
Sbjct: 155 LSDREREVLQMIAEGRSNKEVANLLNISPTTVETHRAHILQKLDIHSVPELILYAVRKGI 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|304406485|ref|ZP_07388141.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344543|gb|EFM10381.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           G DF LT RE+E  T +   K + EIA  L I+  TV NYI+ I  K     R+  IA
Sbjct: 151 GADFALTPREIEIATLLIAYKNNREIAEALFITEGTVKNYISVIYEKVGMNDRAKVIA 208


>gi|329937029|ref|ZP_08286658.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329303636|gb|EGG47521.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 224

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  I+EG +S EIA  L IS  TV  + A+++ K   + R     YA+R
Sbjct: 159 DSVLTPREEEVLKLIAEGHSSKEIADTLFISIKTVQRHRANLLHKLGLRDRLELTRYAIR 218

Query: 243 NNIV 246
             +V
Sbjct: 219 AGLV 222


>gi|308070500|ref|YP_003872105.1| Germination protein gerE [Paenibacillus polymyxa E681]
 gi|305859779|gb|ADM71567.1| Germination protein gerE [Paenibacillus polymyxa E681]
          Length = 75

 Score = 43.5 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A+   +R
Sbjct: 11  FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIR 69


>gi|52842163|ref|YP_095962.1| transcriptional regulator LuxR [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|40644088|emb|CAE46907.1| putative transcriptional regulator [Legionella pneumophila]
 gi|52629274|gb|AAU28015.1| transcriptional regulator LuxR [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 223

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE EC+  +  GK++ EI  +L +S+ T+ +YI +I  K   + ++  +  AV N
Sbjct: 145 YGLTDREHECVFLLIRGKSAKEIGALLSLSKRTIESYIENIKNKMDCRNKAEILVKAVLN 204


>gi|83941288|ref|ZP_00953750.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36]
 gi|83847108|gb|EAP84983.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36]
          Length = 244

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L WI+ GK++  IA I+G+SR+TV+  +  +  K     R+ A    V   +
Sbjct: 176 LSPRELELLRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGVAFGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|313674425|ref|YP_004052421.1| two component transcriptional regulator, luxr family [Marivirga
           tractuosa DSM 4126]
 gi|312941123|gb|ADR20313.1| two component transcriptional regulator, LuxR family [Marivirga
           tractuosa DSM 4126]
          Length = 196

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 157 DRLWEIGLLAAYQANMFKSYDV-HWGKDF--ELTGREVECLTWISEGKTSDEIAVILGIS 213
           +R  E+ +  A   N F  YD      DF    T RE+E +  ++ GK+S EIA IL IS
Sbjct: 110 ERSLEVAINVA--INKFYEYDFKEINTDFLSNFTSREIEIIKLLAAGKSSSEIAEILFIS 167

Query: 214 RNTVNNYIASIMRKTATKTRSGAI 237
             TV+ + ++I++K+  K+ +  I
Sbjct: 168 PQTVSKHRSNILKKSGCKSSTELI 191


>gi|323139047|ref|ZP_08074106.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC
           49242]
 gi|322395707|gb|EFX98249.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC
           49242]
          Length = 261

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT R+ E L W + GKT  EIA IL +S++TV+ Y+           R+ AI  A+R  
Sbjct: 199 KLTDRQSEVLKWAALGKTDWEIAAILDVSQHTVDKYMRQSKEALNAVNRTAAIVLAMRYG 258

Query: 245 IV 246
           ++
Sbjct: 259 LI 260


>gi|228920976|ref|ZP_04084313.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838670|gb|EEM83974.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 213

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELYITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|302526449|ref|ZP_07278791.1| predicted protein [Streptomyces sp. AA4]
 gi|302435344|gb|EFL07160.1| predicted protein [Streptomyces sp. AA4]
          Length = 279

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L   + G+T+ +IA  LG+   TV +Y+ + MRK   KTR  A+  A R N+
Sbjct: 218 LSPRELDVLEGAAAGQTNADIAEALGLGPETVKSYLRNAMRKLDAKTRLQAVNAARRANL 277

Query: 246 V 246
           +
Sbjct: 278 L 278


>gi|302553937|ref|ZP_07306279.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471555|gb|EFL34648.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 204

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   S+G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A
Sbjct: 144 LTDREREVLRAASDGSTNAELATALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVA 198


>gi|88809905|ref|ZP_01125411.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH
           7805]
 gi|88786289|gb|EAR17450.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH
           7805]
          Length = 97

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 38/56 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+
Sbjct: 19  LSARELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAM 74


>gi|329113956|ref|ZP_08242723.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
 gi|326696703|gb|EGE48377.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
          Length = 295

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             ++ RE E L WIS GKTS +IA IL +S  T++ +I  I  KT 
Sbjct: 232 LNISAREAEVLLWISRGKTSRDIADILLVSPRTIDKHIEQIYNKTG 277


>gi|310643684|ref|YP_003948442.1| transcriptional regulator, luxr family [Paenibacillus polymyxa SC2]
 gi|309248634|gb|ADO58201.1| Transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2]
          Length = 75

 Score = 43.5 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A+   +R
Sbjct: 11  FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIR 69


>gi|306823235|ref|ZP_07456611.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801640|ref|ZP_07695761.1| response regulator receiver domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553867|gb|EFM41778.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221772|gb|EFO78063.1| response regulator receiver domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 248

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------ELTGREVECLT 195
           G  ++ P     L +R+ E GL       +  S D    +         ELT RE E L 
Sbjct: 138 GNAIIAPSATKRLIERMMEGGLTDQDSLTIPTSADTAPSRPAYTDPELDELTDREREVLI 197

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N++V
Sbjct: 198 EIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFAYENHLV 248


>gi|295695280|ref|YP_003588518.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295410882|gb|ADG05374.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 223

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L +++ G  + E+A  L IS  TV N+ A++MRK    T    I Y  RN +
Sbjct: 159 LTEREREVLVFLARGYQNREVAKELNISVKTVENHKANMMRKLGVSTVRELIEYGRRNRL 218

Query: 246 V 246
           +
Sbjct: 219 L 219


>gi|294631853|ref|ZP_06710413.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|292835186|gb|EFF93535.1| two-component system, regulatory protein [Streptomyces sp. e14]
          Length = 229

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I+EG ++ EIA  L +S  TV  +I ++  KT  K R+ A+ YA    +
Sbjct: 164 LTARECEVVVLIAEGLSNQEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYAKGL 223

Query: 246 V 246
           V
Sbjct: 224 V 224


>gi|269796573|ref|YP_003316028.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269098758|gb|ACZ23194.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG+++ EIA  L +S  TV ++++ I  KT  + R+ A+  A  + +
Sbjct: 153 LTDREREVLVALAEGQSNTEIAESLHLSETTVKSHVSHIFTKTGARDRAQAVGIAYESGL 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|319795660|ref|YP_004157300.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315598123|gb|ADU39189.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 236

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 33/50 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ELT R+++ L W+ EGK + EIA +  +S  TV N++++I+     ++R+
Sbjct: 180 ELTPRQMQVLQWVLEGKANKEIAQLANLSEGTVKNHVSTILLLFGMRSRA 229


>gi|326776946|ref|ZP_08236211.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657279|gb|EGE42125.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 344

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + + L+ REVE +  I+ G ++ +IA    IS  TV N+I  I  K  + +RS AIA+
Sbjct: 274 QQYRLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIAH 331


>gi|258513942|ref|YP_003190164.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777647|gb|ACV61541.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 824

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E LT  +EG   +EIA  L +S  TV  ++A+I RK     R+ A+  A +  I
Sbjct: 764 LTERELEVLTLAAEGLRRNEIAARLYVSGTTVKTHLANIYRKLEVGGRTAAVKKAGKLKI 823

Query: 246 V 246
           +
Sbjct: 824 I 824


>gi|222149565|ref|YP_002550522.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736547|gb|ACM37510.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 312

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE E L WI+ GK + +I  ILG++  TVN ++  I  K   + R
Sbjct: 249 FGLTQRESEVLLWIARGKPNRDIGEILGLAARTVNKHLEQIYVKLGVENR 298


>gi|23099974|ref|NP_693440.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778205|dbj|BAC14475.1| two-component response regulator involved in degradative enzyme
           [Oceanobacillus iheyensis HTE831]
          Length = 230

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE + L  +++GK++  +A  L IS  TV N++++I++K     R+ A+  A+R
Sbjct: 167 LTKRECQVLQLLADGKSNRAVAETLYISEKTVKNHVSNILQKMNVNDRTQAVVSAIR 223


>gi|323490881|ref|ZP_08096077.1| two-component response regulator [Planococcus donghaensis MPA1U2]
 gi|323395449|gb|EGA88299.1| two-component response regulator [Planococcus donghaensis MPA1U2]
          Length = 198

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+ +  +  LT RE + +  I+EG+++ EIA  L I+  TV NYI++I+ K     R  A
Sbjct: 129 DLAYADENPLTDREKQVMELIAEGRSTKEIAKELFITTGTVRNYISTILDKLEVSNRIEA 188

Query: 237 IA 238
           I+
Sbjct: 189 IS 190


>gi|311896597|dbj|BAJ29005.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++ EIA  L +S +TV  +++++++K   + R  A+ +A     
Sbjct: 156 LTGREAETLKLVARGMSNAEIAAELVVSEHTVKTHVSNLLQKLGLRDRVHAVVFAYEAGA 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|171743289|ref|ZP_02919096.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC
           27678]
 gi|171278903|gb|EDT46564.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC
           27678]
          Length = 248

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------ELTGREVECLT 195
           G  ++ P     L +R+ E GL       +  S D    +         ELT RE E L 
Sbjct: 138 GNAIIAPSATKRLIERMMEGGLTDQDSLTIPASADTAPSRPAYTDPELDELTDREREVLI 197

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N++V
Sbjct: 198 EIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFAYENHLV 248


>gi|114704741|ref|ZP_01437649.1| putative transcription regulator protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539526|gb|EAU42646.1| putative transcription regulator protein [Fulvimarina pelagi
           HTCC2506]
          Length = 226

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE +CL     GKTS EI ++L +S  T++ Y+ +  RK     R+  +A A +
Sbjct: 165 LTPRERDCLRLAMLGKTSSEIGIVLSLSEYTISQYLTAAQRKLDASNRTHTVAMAAQ 221


>gi|111024941|ref|YP_707361.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|40787253|gb|AAR90170.1| putative two-component system response regulator [Rhodococcus sp.
           DK17]
 gi|51338943|dbj|BAD36797.1| hypothetical protein [Rhodococcus sp. RHA1]
 gi|110823920|gb|ABG99203.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 212

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L + + G ++ EIA  L ++RNTV  Y+ S M+K   + R  AIA A
Sbjct: 152 LTRREYEVLRFAAMGNSNPEIAQELSLARNTVKTYLQSAMQKLNARNRVEAIARA 206


>gi|91974882|ref|YP_567541.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91681338|gb|ABE37640.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB5]
          Length = 242

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+  Y  N  +S      +   LT RE E L W + GKT+ EI++IL I+  TV  ++  
Sbjct: 158 LIGVYAHNRIRSLHRPKPQRRLLTSRECEILLWAAHGKTAWEISIILHIAERTVKFHLIE 217

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
             +K     R+ A+A A+   ++
Sbjct: 218 ASKKLNAVNRTAAVAKALAFGLI 240


>gi|330972050|gb|EGH72116.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 220

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR 
Sbjct: 154 YHLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|255025548|ref|ZP_05297534.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J2-003]
          Length = 117

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++ 
Sbjct: 54  LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 112


>gi|253575241|ref|ZP_04852579.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845238|gb|EES73248.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 221

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A+   N F+   V      ELT RE++ L  +++GK++ +IA  L I   TV  ++ +I
Sbjct: 139 VASKMMNRFRQPKVEAPAHEELTEREMDVLRLLAQGKSNQDIADELIIGIKTVKFHVTNI 198

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           + K   + R+ A  YA +N +
Sbjct: 199 LAKLGVEDRTQAAIYAYKNGL 219


>gi|28378203|ref|NP_785095.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254556410|ref|YP_003062827.1| response regulator [Lactobacillus plantarum JDM1]
 gi|28271038|emb|CAD63943.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254045337|gb|ACT62130.1| response regulator [Lactobacillus plantarum JDM1]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 181 GKDFELTG------REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G D  LTG      RE E    ++ G ++ EIA  L IS  TV  + A+IMRK A   R+
Sbjct: 144 GVDTNLTGYNGLSKREREVFPLVALGYSNKEIAAKLFISTKTVEAHKANIMRKLALNNRA 203

Query: 235 GAIAYAVRNNIV 246
             I YA+ ++++
Sbjct: 204 DLIRYAIHHHLI 215


>gi|317404517|gb|EFV84926.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 83

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE   L W + GKTS E A IL IS +TVN ++ +  RK   + R  A+A A+R 
Sbjct: 16  VRLSPRESASLHWSAIGKTSWETARILDISESTVNFHLRNACRKLQVRGRRAAVATAIRR 75

Query: 244 NIV 246
            ++
Sbjct: 76  GLL 78


>gi|260427555|ref|ZP_05781534.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260422047|gb|EEX15298.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 233

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTG++   L+ I EGK + +IA  L I+  TV  ++ +IMRK    +R+ A+  A
Sbjct: 163 LTGQQARILSLICEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVHSRTQAVLIA 217


>gi|218288243|ref|ZP_03492542.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241602|gb|EED08775.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 224

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +++G T+ E+A  L IS  TV  +   IMR+    +R+  + YA +N +
Sbjct: 150 LSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQHIMRRIGLHSRAALVRYAYQNGL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|182412194|ref|YP_001817260.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839408|gb|ACB73660.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 214

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           IG   A        +        +++ RE + L +++EG +S EIA  LG+S  TV N+ 
Sbjct: 120 IGPAVARAVRRMAGHPERIDSKLDISTRERDVLRFVAEGLSSKEIAQRLGLSVRTVENHR 179

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           ASI R+T  ++ +    +A R  +V
Sbjct: 180 ASITRRTGLRSVAQLTLHAARLGLV 204


>gi|330953920|gb|EGH54180.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 220

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR 
Sbjct: 154 YRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|302529844|ref|ZP_07282186.1| hypothetical protein SSMG_06226 [Streptomyces sp. AA4]
 gi|302438739|gb|EFL10555.1| hypothetical protein SSMG_06226 [Streptomyces sp. AA4]
          Length = 212

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  REVE L  +++G  + EIA  L  S  T+ N I++++ +   + RS A+AYA+R  I
Sbjct: 152 LQSREVEILGLLADGLGTVEIAERLAYSERTIKNIISTLLVRFDLRNRSHAVAYALRTGI 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|28870687|ref|NP_793306.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213969014|ref|ZP_03397154.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301385424|ref|ZP_07233842.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060502|ref|ZP_07252043.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|28853935|gb|AAO57001.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213926313|gb|EEB59868.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|331015804|gb|EGH95860.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 220

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + + VR 
Sbjct: 154 YNLTARQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|269139938|ref|YP_003296639.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202]
 gi|53147449|dbj|BAD52106.1| AHL-dependent transcriptional regulator [Edwardsiella tarda]
 gi|255529368|gb|ACU12619.1| AHL-dependent transcriptional regulator [Edwardsiella tarda]
 gi|267985599|gb|ACY85428.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202]
 gi|304559773|gb|ADM42437.1| EdwR [Edwardsiella tarda FL6-60]
          Length = 239

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + RE E L W S GKT  EIA+ILGI   TV  +I ++++K        AI   V
Sbjct: 174 FSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGV 229


>gi|302525544|ref|ZP_07277886.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434439|gb|EFL06255.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 222

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K+ E LT REVE L  I+ G ++ EIA  L +S  TV  ++  +  K   + R+ A+A+A
Sbjct: 156 KELEGLTAREVEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFSKAGLRDRAQAVAFA 215

Query: 241 VRNNI 245
            R  I
Sbjct: 216 YRAGI 220


>gi|258516863|ref|YP_003193085.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780568|gb|ACV64462.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 216

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +D+ LT RE+E    ++ G +++ I++ LGIS  TV NYI+ I  K    +R  AI
Sbjct: 149 QDYGLTQREIEIAGLMARGFSNELISITLGISLGTVKNYISVIYSKLEANSRQEAI 204


>gi|89098035|ref|ZP_01170921.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89087198|gb|EAR66313.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 210

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +  H   +  LT RE +    I  GKT+ EIA  L +S  TV N++  I++K   + R+ 
Sbjct: 140 HSCHEEAEVPLTPRERDIARLIGHGKTNKEIANELYLSVGTVKNHLTQILQKLDLRDRTQ 199

Query: 236 AIAYAVRNNIV 246
              +AV+N+I+
Sbjct: 200 LAIFAVKNDIL 210


>gi|300784159|ref|YP_003764450.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793673|gb|ADJ44048.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 215

 Score = 43.5 bits (101), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S + H G    L+ RE + L  ++ G+   ++A IL IS  TV +Y+  I  KT  + R+
Sbjct: 143 SEERHAGPKIVLSEREKQVLRLVAAGERDVDVAEILNISVRTVRSYLDRIRDKTGERRRA 202

Query: 235 GAIAYAVRNNIV 246
           G +  A+R  ++
Sbjct: 203 GFVRVAIREGLL 214


>gi|238920760|ref|YP_002934275.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri
           93-146]
 gi|238870330|gb|ACR70041.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri
           93-146]
          Length = 239

 Score = 43.5 bits (101), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + RE E L W S GKT  EIA+ILGI   TV  +I ++++K        AI   V
Sbjct: 174 FSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGV 229


>gi|119964473|ref|YP_946300.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119951332|gb|ABM10243.1| putative Transcriptional regulator, LuxR-family [Arthrobacter
           aurescens TC1]
          Length = 424

 Score = 43.5 bits (101), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             WG    L  RE+E L  ++ G+ +  IA  LGIS NTV  ++ ++ RK   ++R+ AI
Sbjct: 360 AEWG----LAARELEVLQLLAAGQRNRTIATDLGISENTVKFHLRNLFRKLDVRSRTEAI 415

Query: 238 AYA 240
           A A
Sbjct: 416 ALA 418


>gi|288924067|ref|ZP_06418126.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288344590|gb|EFC79060.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 171

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +R+ A  Y ++ 
Sbjct: 111 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 168


>gi|251799449|ref|YP_003014180.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547075|gb|ACT04094.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE E L  + +G  + EIA  L ++  TV N++++++ K   + R+ A  YAVR+
Sbjct: 160 QLTEREKEVLALLGQGLNNKEIAGSLFLTEGTVKNHVSNVIAKLGLRDRTQAAIYAVRH 218


>gi|160881748|ref|YP_001560716.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430414|gb|ABX43977.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 232

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVRN 243
           ELT RE E    I+EG T+ +IA  L IS  TV NYI+SI  K     R+  A+A    N
Sbjct: 170 ELTKREHEICAMIAEGFTNSQIASFLYISEGTVKNYISSIYDKLQIHDRAALAVALTKTN 229

Query: 244 NIV 246
            I+
Sbjct: 230 RII 232


>gi|66046528|ref|YP_236369.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257235|gb|AAY38331.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR 
Sbjct: 154 YHLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|327251604|gb|EGE63290.1| transcriptional regulator, LuxR family protein [Escherichia coli
           STEC_7v]
          Length = 148

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 80  YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 139

Query: 240 AVR 242
           A+R
Sbjct: 140 ALR 142


>gi|311897942|dbj|BAJ30350.1| putative response regulator [Kitasatospora setae KM-6054]
          Length = 219

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G+   L+ RE+  L  I+EG T  E A  L +S  TV NY+++ + KT  + R  AI
Sbjct: 151 VRAGQAGPLSRRELAVLGEIAEGSTVREAAAALSLSPGTVRNYVSAAIAKTRARNRCDAI 210

Query: 238 AYA 240
             A
Sbjct: 211 RIA 213


>gi|182436316|ref|YP_001824035.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464832|dbj|BAG19352.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 354

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + + L+ REVE +  I+ G ++ +IA    IS  TV N+I  I  K  + +RS AIA+
Sbjct: 284 QQYRLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIAH 341


>gi|149925601|ref|ZP_01913865.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149825718|gb|EDM84926.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 237

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE + L  +++G    EIA ILG+S NT++ YI  I +K A  +R+ A+  A
Sbjct: 172 LSEREQQVLEMVAKGFMQAEIADILGVSINTISTYIKRIYKKLAVNSRTSAVHRA 226


>gi|51891630|ref|YP_074321.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855319|dbj|BAD39477.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 198

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++ G T+ EIA  L IS  TV  +I+SI+ K     R+ A  +AVR  +
Sbjct: 136 LTPRELDVLRALAHGLTNREIAERLVISETTVKTHISSILSKLQLTDRTQAALWAVREGL 195

Query: 246 V 246
           V
Sbjct: 196 V 196


>gi|290961496|ref|YP_003492678.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260651022|emb|CBG74140.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 7/95 (7%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G I+L+  + +  LL+  +AN  +      G+   LT RE E L  I++G+++ EIA  L
Sbjct: 124 GHILLQPEVAD-ALLSQEEANSGQ------GRGGSLTEREKEVLGLIADGRSNREIARAL 176

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 177 VLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGM 211


>gi|157691669|ref|YP_001486131.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|194014892|ref|ZP_03053509.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
 gi|157680427|gb|ABV61571.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|194013918|gb|EDW23483.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
          Length = 216

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ELT RE + L  I++GK++ EIA  L IS  TV  +++ ++ K     R+ A  YAV
Sbjct: 149 ELTNRERDVLFEIAKGKSNKEIASSLFISEKTVKTHVSHVLSKLELADRTQAALYAV 205


>gi|15803376|ref|NP_289409.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|261226155|ref|ZP_05940436.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256590|ref|ZP_05949123.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|300950599|ref|ZP_07164501.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300958180|ref|ZP_07170334.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|301026137|ref|ZP_07189611.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|301643812|ref|ZP_07243849.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|331643538|ref|ZP_08344669.1| DNA-binding response regulator, LuxR family [Escherichia coli H736]
 gi|12517351|gb|AAG57968.1|AE005514_5 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|887806|gb|AAA83037.1| ORF_f148 [Escherichia coli]
 gi|299879832|gb|EFI88043.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|300315132|gb|EFJ64916.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|300450079|gb|EFK13699.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|301077845|gb|EFK92651.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|315137458|dbj|BAJ44617.1| putative 2-component transcriptional regulator [Escherichia coli
           DH1]
 gi|323935789|gb|EGB32092.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
 gi|331037009|gb|EGI09233.1| DNA-binding response regulator, LuxR family [Escherichia coli H736]
          Length = 148

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 80  YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 139

Query: 240 AVR 242
           A+R
Sbjct: 140 ALR 142


>gi|15613144|ref|NP_241447.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173195|dbj|BAB04300.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 201

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L     GKT+++IA +L ++  TV NYI++ ++K   + R  AI  A
Sbjct: 141 LTEREQEVLRLTKGGKTTEQIATVLYLTNGTVRNYISTAIQKLEVENRHQAIQKA 195


>gi|312889097|ref|ZP_07748656.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311298407|gb|EFQ75517.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 225

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ RE E L    +  T++EIA  L IS  TVN +  +++ KT ++  +G + YA++NNI
Sbjct: 162 ISAREEEILRLTCQQYTAEEIANKLFISVKTVNGHRNNLLIKTGSRNVTGLVIYAIKNNI 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|307700360|ref|ZP_07637400.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307614571|gb|EFN93800.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 217

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G ++  PK   ++  RL  +   AA      KS+ +       L+ RE++ +  ++E   
Sbjct: 120 GELVFSPKCSQVVVARLTGLAADAAEGEEYVKSHGI-------LSERELQVVRLVAEALE 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L IS  TV  ++ SIM K  T  R+G +A A R  ++
Sbjct: 173 NKQIASELDISVATVKKHVQSIMDKLGTDNRAGIVAKAFRAGLL 216


>gi|326771790|ref|ZP_08231075.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
 gi|326637923|gb|EGE38824.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
          Length = 203

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L   ++G T  E+A  + +S  T  N+++  M KT   TR+ A+  A +
Sbjct: 138 DSPLTARETEVLQAAADGATVSEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQ 197

Query: 243 NN 244
             
Sbjct: 198 KG 199


>gi|223044000|ref|ZP_03614040.1| response regulator protein VraR [Staphylococcus capitis SK14]
 gi|222442543|gb|EEE48648.1| response regulator protein VraR [Staphylococcus capitis SK14]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|157157590|ref|YP_001464190.1| LuxR family transcriptional regulator [Escherichia coli E24377A]
 gi|209920305|ref|YP_002294389.1| hypothetical protein ECSE_3114 [Escherichia coli SE11]
 gi|300815723|ref|ZP_07095947.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300820647|ref|ZP_07100798.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300906614|ref|ZP_07124305.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|301302994|ref|ZP_07209121.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|309793907|ref|ZP_07688332.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|331678834|ref|ZP_08379508.1| putative 2-component transcriptional regulator [Escherichia coli
           H591]
 gi|157079620|gb|ABV19328.1| transcriptional regulator, LuxR family [Escherichia coli E24377A]
 gi|209913564|dbj|BAG78638.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|300401653|gb|EFJ85191.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300526911|gb|EFK47980.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300531652|gb|EFK52714.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300841658|gb|EFK69418.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|308122314|gb|EFO59576.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|315256718|gb|EFU36686.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1]
 gi|323160002|gb|EFZ45966.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|323162555|gb|EFZ48405.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|323163404|gb|EFZ49231.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|324021194|gb|EGB90413.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3]
 gi|331073664|gb|EGI44985.1| putative 2-component transcriptional regulator [Escherichia coli
           H591]
          Length = 148

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 80  YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 139

Query: 240 AVR 242
           A+R
Sbjct: 140 ALR 142


>gi|108803013|ref|YP_642950.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764256|gb|ABG03138.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 212

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+E L  +++G ++ EIA  L IS  TV  ++  I  K     R+ A+  A++  I
Sbjct: 150 LSGREIEVLDLVAQGASNREIARQLWISETTVKTHLLHIYEKLGVADRTAAVTAAIKRGI 209

Query: 246 V 246
           +
Sbjct: 210 I 210


>gi|258543394|ref|YP_003188827.1| LuxR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634472|dbj|BAI00448.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637530|dbj|BAI03499.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640582|dbj|BAI06544.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643639|dbj|BAI09594.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646694|dbj|BAI12642.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649747|dbj|BAI15688.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652735|dbj|BAI18669.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655791|dbj|BAI21718.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 295

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             ++ RE E L WIS GKTS +IA IL +S  T++ +I  I  KT 
Sbjct: 232 LNISAREAEVLLWISRGKTSRDIADILLVSPRTIDKHIEQIYNKTG 277


>gi|134103142|ref|YP_001108803.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003915|ref|ZP_06561888.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915765|emb|CAM05878.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 151

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +S+GK++ +I   L +S +TV  +   + RK   + R+ A+A+  R  
Sbjct: 89  QLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRG 148

Query: 245 IV 246
           +V
Sbjct: 149 LV 150


>gi|326381529|ref|ZP_08203223.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199776|gb|EGD56956.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++GK++ EIA  L +S  TV  ++++++ K   + R+ A+ +A  N +
Sbjct: 149 LTPRELEVLLTVADGKSNGEIADELFVSEQTVKTHVSNMLTKLGLRDRAQAVVFAYENGL 208


>gi|307331693|ref|ZP_07610799.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306882672|gb|EFN13752.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 302

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + G   EL+ REV+ L  ++ G T+   A  LG+   TV +Y+ S MRK    TR  A+ 
Sbjct: 234 NGGGGVELSPREVDVLACVASGATNSTAAERLGLRPETVKSYLRSSMRKLGAHTRLHAVV 293

Query: 239 YAVRNNIV 246
            A R  ++
Sbjct: 294 EARRAGLL 301


>gi|304439372|ref|ZP_07399284.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372154|gb|EFM25748.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 208

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 173 FKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            K+ +V  G  K  +LT RE++ L  ++ G  +DEIA  LGIS NTV  +I  ++ KT  
Sbjct: 129 IKTPEVKLGMTKSTDLTPREIQVLRLLTTGVGNDEIAESLGISLNTVKTHIQHLLDKTGF 188

Query: 231 KTRS 234
            +R+
Sbjct: 189 TSRT 192


>gi|291008395|ref|ZP_06566368.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 340

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++LT RE++ +T ++ G ++ EIA  L +SR TV+ ++  I+ K A  +R+   A A R 
Sbjct: 268 YDLTVRELQIVTLLAVGASNPEIADALVVSRRTVSTHVEHILAKLAVASRAEVAALAARE 327

Query: 244 NI 245
            +
Sbjct: 328 GL 329


>gi|227875745|ref|ZP_03993873.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269976705|ref|ZP_06183681.1| two-component response regulator [Mobiluncus mulieris 28-1]
 gi|306819021|ref|ZP_07452738.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227843687|gb|EEJ53868.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269935070|gb|EEZ91628.1| two-component response regulator [Mobiluncus mulieris 28-1]
 gi|304648214|gb|EFM45522.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G ++  PK   ++  RL  +   AA      KS+ +       L+ RE++ +  ++E   
Sbjct: 123 GELVFSPKCSQVVVARLTGLAADAAEGEEYVKSHGI-------LSERELQVVRLVAEALE 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L IS  TV  ++ SIM K  T  R+G +A A R  ++
Sbjct: 176 NKQIASELDISVATVKKHVQSIMDKLGTDNRAGIVAKAFRAGLL 219


>gi|166007196|pdb|2RNJ|A Chain A, Nmr Structure Of The S. Aureus Vrar Dna Binding Domain
          Length = 91

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 30  LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 89

Query: 246 V 246
           +
Sbjct: 90  I 90


>gi|309789860|ref|ZP_07684439.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308228164|gb|EFO81813.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 203

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +  GKT+ +IA +L IS  TV  +++SI+ K     R+ A   AV++ 
Sbjct: 141 DLTNREREVLRLLVAGKTNHQIADLLKISPATVRIHVSSILAKLGVNNRTEAAIIAVQHK 200

Query: 245 IV 246
           ++
Sbjct: 201 LI 202


>gi|299535065|ref|ZP_07048391.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1]
 gi|298729561|gb|EFI70110.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1]
          Length = 376

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE   L  ++EG  + +IA +L +S +TV +Y++S+M K   K R+  +A A R
Sbjct: 315 LTERESMILGLLAEGYDNKKIAGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFR 371


>gi|302559483|ref|ZP_07311825.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477101|gb|EFL40194.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G ++ EIAV L ++  TV  ++  I+ K   + R+ A  +A  + 
Sbjct: 154 ELTERETEVLALIAQGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|133757303|ref|YP_001096222.1| hypothetical protein pLEW279a_p23 [Corynebacterium sp. L2-79-05]
 gi|110084187|gb|ABG49341.1| hypothetical protein [Corynebacterium sp. L2-79-05]
          Length = 221

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           FE LT RE E L  +S+G+T+ EIA  L ++  TV  ++++I+RKT  + R  A   A+R
Sbjct: 158 FERLTAREREILIRLSQGETNAEIAKALHLAPGTVKVHVSAILRKTEARNRVEAALIALR 217

Query: 243 NN 244
             
Sbjct: 218 AG 219


>gi|22299408|ref|NP_682655.1| transcriptional regulator [Thermosynechococcus elongatus BP-1]
 gi|22295591|dbj|BAC09417.1| transcriptional regulator [Thermosynechococcus elongatus BP-1]
          Length = 93

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 38/56 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE++ L  ++ G T+ +IA  L IS+ TV+N+I++I+ KT ++ R   + +A+
Sbjct: 14  LSERELQVLELVAAGLTNQDIAAKLDISKRTVDNHISNILMKTKSENRVALVRWAL 69


>gi|325067020|ref|ZP_08125693.1| NarL family two-component response regulator [Actinomyces oris K20]
          Length = 199

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L   ++G T  E+A  + +S  T  N+++  M KT   TR+ A+  A +
Sbjct: 134 DSPLTARETEVLQAAADGATVSEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQ 193

Query: 243 NN 244
             
Sbjct: 194 KG 195


>gi|323705213|ref|ZP_08116789.1| transcriptional regulator, LuxR family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535639|gb|EGB25414.1| transcriptional regulator, LuxR family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 121

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE+E L +I +G  +++IA IL I +NTV N+I  I +K   K +
Sbjct: 50  LTKREMEILFYIFKGYKNNQIANILHIKKNTVKNHIYHIYKKFNAKNK 97


>gi|302036405|ref|YP_003796727.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604469|emb|CBK40801.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 234

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L WI++G+   EIA  L +S  TV+ Y + ++ K   +T +  I YA+   +
Sbjct: 174 LSDREIEVLQWIAQGRRLTEIAEQLNLSIKTVSTYRSRLLIKLGMRTTAELIRYALDQQL 233

Query: 246 V 246
           V
Sbjct: 234 V 234


>gi|269926224|ref|YP_003322847.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789884|gb|ACZ42025.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 218

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 17/106 (16%)

Query: 157 DRLWEIGLLAAYQA-------------NMFKSYDVHWGK--DFELTGREVECLTWISEGK 201
           DR +E+ L AAYQ                F    +   K  D ELT RE E L  + +G 
Sbjct: 107 DRFFEL-LEAAYQGEPALPPNLARKVLQEFAQPKIERKKRPDAELTDREREILELLVQGI 165

Query: 202 TSD-EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS+ EIA  L +S +TV  ++ +I+ K   + R+  +AYA+++ ++
Sbjct: 166 TSNKEIAERLFLSESTVKYHLHNILNKLHLQNRAQVVAYALQHGLI 211


>gi|189461961|ref|ZP_03010746.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136]
 gi|189431355|gb|EDV00340.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136]
          Length = 195

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++ +L+ RE+E LT I++G  + EIA  L IS  TV ++  +I  K   K+ SG   YAV
Sbjct: 126 QEHDLSPREIEVLTLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLAIYAV 185

Query: 242 RNNIV 246
            +  V
Sbjct: 186 MHGYV 190


>gi|33239629|ref|NP_874571.1| transcriptional regulator [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237154|gb|AAP99223.1| Transcriptional regulator, contains HTH motif [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 93

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 37/56 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E +  ++ G T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+
Sbjct: 14  LSAREMEIIELVASGLTNQEIAQKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 69


>gi|163938916|ref|YP_001643800.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861113|gb|ABY42172.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 214

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +K  +VH  K  E  LT +E+  L  I+ G  + EIA  +GI+  TV  Y+ +I  K   
Sbjct: 137 YKRKEVHADKVAENNLTDKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGV 196

Query: 231 KTRSGAIAYAVRNNIV 246
            +RS A+A ++   ++
Sbjct: 197 NSRSEAVAVSIERKLI 212


>gi|329848370|ref|ZP_08263398.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328843433|gb|EGF93002.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 221

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I++G +  E A ++GIS  TV  YI  I RK + ++R  A+   + + +
Sbjct: 154 LSAREQQLLELIAQGLSRKEAARVMGISPYTVAEYIQGIYRKLSVRSRGAAVREGIHSGL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|283455737|ref|YP_003360301.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|283102371|gb|ADB09477.1| Two-component response regulator [Bifidobacterium dentium Bd1]
          Length = 251

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------ELTGREVECLT 195
           G  ++ P     L +R+ E GL       +  S D    +         ELT RE E L 
Sbjct: 141 GNAIIAPSATKRLIERMMEGGLTDQDSLTIPASADTAPSRPAYTDPELDELTDREREVLI 200

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N++V
Sbjct: 201 EIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAVVFAYENHLV 251


>gi|94970774|ref|YP_592822.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552824|gb|ABF42748.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 211

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 31/130 (23%)

Query: 148 FPKGRIIL---RDRLWEI--GLLAAYQANMFKSY----------DVHWGK---------- 182
           FP+ R+I+    D   EI   L A   A + KS            VH G           
Sbjct: 80  FPRARVIILTTSDSHTEIDRALRAGAAAYILKSMPMNEMLAVIRSVHAGARHIPQEVASR 139

Query: 183 ------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                 +  LT RE+E L  I +G  + +IA  L IS  TVN +I +I+ K     R+ A
Sbjct: 140 LAENIGEESLTSRELEVLHLIRDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHA 199

Query: 237 IAYAVRNNIV 246
           +  AVR  ++
Sbjct: 200 VTIAVRRGLL 209


>gi|186682185|ref|YP_001865381.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464637|gb|ACC80438.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 215

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE++ L  I+ G  + EIA  L +S NTV NY+ +I+ + + + R+ A  +A
Sbjct: 152 QLTPRELDVLRLIASGANNREIAESLFLSENTVKNYVTNILSRLSLRDRTQAALFA 207


>gi|302186676|ref|ZP_07263349.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR 
Sbjct: 154 YRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|290454885|emb|CBI67623.1| sR protein [Pseudomonas fuscovaginae]
          Length = 237

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAV 241
           LT REVE L W + GKT  E  +IL I   TV  ++ + MRK  ++ K  +   AYA+
Sbjct: 176 LTVREVETLKWSATGKTYTETGLILSIDERTVKFHLVNAMRKLHSSNKVEAAMKAYAL 233


>gi|302550551|ref|ZP_07302893.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468169|gb|EFL31262.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 37/56 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LTGRE E L  +++G T+ EIA  + +   TV +++A+++ KT T+ R+ A+  A
Sbjct: 156 KLTGREREVLRRMADGLTNAEIARRMEVGPATVKSHVAAVLAKTGTRDRTQAVIAA 211


>gi|242371807|ref|ZP_04817381.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242350508|gb|EES42109.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 212

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 151 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|15613614|ref|NP_241917.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173666|dbj|BAB04770.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 212

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  +  + EGK++ EIA  L +S  TV NYI+  + K   + R+    YAV+  +
Sbjct: 152 LTKRELAVVKLVGEGKSNQEIADALFLSVGTVKNYISQALDKLELRDRTQLAIYAVKQQL 211


>gi|300898079|ref|ZP_07116447.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|301027468|ref|ZP_07190805.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|331674332|ref|ZP_08375092.1| putative 2-component transcriptional regulator [Escherichia coli
           TA280]
 gi|300358217|gb|EFJ74087.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300394976|gb|EFJ78514.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|323966643|gb|EGB62075.1| luxR family protein regulatory protein [Escherichia coli M863]
 gi|331068426|gb|EGI39821.1| putative 2-component transcriptional regulator [Escherichia coli
           TA280]
          Length = 221

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 153 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 212

Query: 240 AVRNNI 245
           A+R  +
Sbjct: 213 ALRMGV 218


>gi|229028063|ref|ZP_04184215.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271]
 gi|228733301|gb|EEL84131.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271]
          Length = 214

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REVE L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 150 QLTEREVEVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209

Query: 245 I 245
           +
Sbjct: 210 V 210


>gi|91787753|ref|YP_548705.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91696978|gb|ABE43807.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 270

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE + + W++ GKT+ EI  IL IS  TV N++  I +K     R+ A++   R
Sbjct: 209 LSERETQIMAWVAMGKTNSEIGTILNISGFTVKNHMQRIFQKLNVFNRTQAVSKVTR 265


>gi|307727058|ref|YP_003910271.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587583|gb|ADN60980.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003]
          Length = 242

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  
Sbjct: 178 KLTPRERECLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLG 237

Query: 245 IV 246
           ++
Sbjct: 238 LI 239


>gi|307310532|ref|ZP_07590180.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|306909427|gb|EFN39922.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|323183401|gb|EFZ68798.1| transcriptional regulator, LuxR family protein [Escherichia coli
           1357]
          Length = 147

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 79  YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 138

Query: 240 AVR 242
           A+R
Sbjct: 139 ALR 141


>gi|89109637|ref|AP_003417.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|170082422|ref|YP_001731742.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|256024645|ref|ZP_05438510.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B]
 gi|307139537|ref|ZP_07498893.1| DNA-binding transcriptional regulator [Escherichia coli H736]
 gi|85675670|dbj|BAE76923.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|169890257|gb|ACB03964.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|326339074|gb|EGD62889.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. 1044]
 gi|326343044|gb|EGD66812.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. 1125]
          Length = 147

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 79  YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 138

Query: 240 AVR 242
           A+R
Sbjct: 139 ALR 141


>gi|17230043|ref|NP_486591.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|75906706|ref|YP_321002.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|17131643|dbj|BAB74250.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|75700431|gb|ABA20107.1| transcriptional regulator, LuxR family [Anabaena variabilis ATCC
           29413]
          Length = 87

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 39/57 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   + +A++
Sbjct: 12  LSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILDKTRTENRVALVRWALQ 68


>gi|23100277|ref|NP_693744.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778509|dbj|BAC14778.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++GK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA +N 
Sbjct: 148 QLTEREKEILLLMAKGKSNQEIANELFIALKTVKVHVSNILGKLEVHDRTQAVIYAFQNK 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|330964297|gb|EGH64557.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + + VR 
Sbjct: 154 YNLTARQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|323345346|ref|ZP_08085569.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323093460|gb|EFZ36038.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 203

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV +  
Sbjct: 138 LTGREIEVLSLIVQGFINKEIAGRLNISITTVITHRKNIMEKLGMKSVSALTIYAVMHGY 197

Query: 246 V 246
           V
Sbjct: 198 V 198


>gi|314934049|ref|ZP_07841412.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
 gi|313653160|gb|EFS16919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|226365866|ref|YP_002783649.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244356|dbj|BAH54704.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 211

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LTGRE E LT + EG  + EIA  L I   TV  ++A++M KT    R
Sbjct: 153 LTGREREVLTLVGEGLGNQEIAARLHIGVTTVKTHVANLMEKTGCDNR 200


>gi|224552987|gb|ACN54744.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           K+  L+ RE + L W+S GKT  E+++IL I+  TV  ++ ++M+K        A+
Sbjct: 144 KNVFLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAV 199


>gi|94495818|ref|ZP_01302397.1| probable transcriptional regulator [Sphingomonas sp. SKA58]
 gi|94424510|gb|EAT09532.1| probable transcriptional regulator [Sphingomonas sp. SKA58]
          Length = 491

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L+ +  G     IA  +G+SRNT+ N++A +  K     R+ AI +A
Sbjct: 424 ELTRREKEVLSLLCGGGDDAAIAKEMGVSRNTLRNHVARVYAKIGVNRRAQAILWA 479


>gi|23465503|ref|NP_696106.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|239621956|ref|ZP_04664987.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|23326161|gb|AAN24742.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|239515147|gb|EEQ55014.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 248

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYENH 246

Query: 245 IV 246
           +V
Sbjct: 247 LV 248


>gi|212716971|ref|ZP_03325099.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660256|gb|EEB20831.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM
           16992]
          Length = 248

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYENH 246

Query: 245 IV 246
           +V
Sbjct: 247 LV 248


>gi|157146272|ref|YP_001453591.1| DNA-binding transcriptional regulator CsgD [Citrobacter koseri ATCC
           BAA-895]
 gi|157083477|gb|ABV13155.1| hypothetical protein CKO_02029 [Citrobacter koseri ATCC BAA-895]
          Length = 216

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNIEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|70726072|ref|YP_252986.1| two-component response regulator [Staphylococcus haemolyticus
           JCSC1435]
 gi|88952437|sp|Q4L7J5|VRAR_STAHJ RecName: Full=Response regulator protein vraR
 gi|68446796|dbj|BAE04380.1| two-component response regulator [Staphylococcus haemolyticus
           JCSC1435]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|88800203|ref|ZP_01115771.1| probable two component response regulator transcription regulator
           protein [Reinekea sp. MED297]
 gi|88777049|gb|EAR08256.1| probable two component response regulator transcription regulator
           protein [Reinekea sp. MED297]
          Length = 217

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+V+ LT++S+G +S EIA  L +S +TV  +I +I  K    +R+ A+  A +  I
Sbjct: 155 LTERQVKILTYVSQGFSSKEIAEKLSLSYHTVTTHIKNIYAKLQVNSRTEALHEAAKLGI 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|87301837|ref|ZP_01084671.1| possible transcriptional regulator [Synechococcus sp. WH 5701]
 gi|87283405|gb|EAQ75360.1| possible transcriptional regulator [Synechococcus sp. WH 5701]
          Length = 89

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 38/58 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+E +  ++ G T+ EIA+ L IS+ TV+N++++I  KT  K R   + +A+ N
Sbjct: 14  LSERELEIIERVATGLTNQEIALELMISKRTVDNHVSNIFTKTGAKNRVALLNWAMDN 71


>gi|322690880|ref|YP_004220450.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455736|dbj|BAJ66358.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 248

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYENH 246

Query: 245 IV 246
           +V
Sbjct: 247 LV 248


>gi|283784837|ref|YP_003364702.1| CsgAB operon transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282948291|emb|CBG87871.1| probable CsgAB operon transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 216

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 7/111 (6%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           +T D  R+  GL       + ILR   +    LA+Y      +Y  +  +   LT RE E
Sbjct: 110 VTEDEERVVYGL-------QGILRGECYFSQKLASYLITHSGNYRYNGTESALLTHREKE 162

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 163 ILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|28869442|ref|NP_792061.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852683|gb|AAO55756.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 87

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R
Sbjct: 21  DVQLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIR 80

Query: 243 NNIV 246
             ++
Sbjct: 81  QGVI 84


>gi|71279999|ref|YP_268149.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71145739|gb|AAZ26212.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 215

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V+  +  +LT RE   L+++++GKTS EIA IL IS  TV  +  ++  K    + +  I
Sbjct: 145 VNTNESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRNMKTKLGIHSLAKLI 204

Query: 238 AYAVRNNIV 246
           +YAV++ I+
Sbjct: 205 SYAVKHGII 213


>gi|330876658|gb|EGH10807.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + + VR 
Sbjct: 154 YNLTARQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|318606649|emb|CBY28147.1| nitrate/nitrite response regulator protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 236

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174
           G+D R   LT   AR  +  M+       +L+D   EI L    LA+   N+F       
Sbjct: 103 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 162

Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 163 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 222

Query: 233 RSGAIAYAVRN 243
           R  A    + N
Sbjct: 223 RVAATIMYLEN 233


>gi|255533126|ref|YP_003093498.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255346110|gb|ACU05436.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 263

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA+Q    K Y ++  +D  L+ RE E L W++EG +S  IA  L IS +TV N+  S+ 
Sbjct: 184 AAHQTIYKKVYHLN-EEDKLLSKREKEVLLWMAEGLSSKLIADKLFISEHTVINHRRSMQ 242

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            KT T      +++ ++N ++
Sbjct: 243 DKTNTPNAVALVSFCIKNGLI 263


>gi|300936213|ref|ZP_07151149.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300458670|gb|EFK22163.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
          Length = 221

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 153 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 212

Query: 240 AVRNNI 245
           A+R  +
Sbjct: 213 ALRMGV 218


>gi|238898060|ref|YP_002923741.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465819|gb|ACQ67593.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 243

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 172 MFKSYDV--HWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           ++K  D+  H  +D E+ + RE E L W S GKT +EIA+ILGI   TV  ++ ++++K 
Sbjct: 157 LYKEMDIKHHKREDKEMFSTRENEILYWSSVGKTYEEIAMILGIKLGTVKFHMGNVVKKL 216

Query: 229 ATKTRSGAIAYAVR 242
                  AI   V 
Sbjct: 217 GVINGKHAIRLGVE 230


>gi|254387068|ref|ZP_05002344.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345889|gb|EDX26855.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 216

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+ I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 155 LTDREREVLSHIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGI 214


>gi|171912623|ref|ZP_02928093.1| response regulator receiver protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 257

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 29/51 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE E L WISEGKT+ + A IL IS  TV  ++  I  K   + R  A
Sbjct: 192 LTPREQEVLYWISEGKTNADTATILNISPGTVRVHLERIYPKLGVENRMSA 242


>gi|170693116|ref|ZP_02884277.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170142114|gb|EDT10281.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 255

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  
Sbjct: 191 KLTPRERECLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLG 250

Query: 245 IV 246
           ++
Sbjct: 251 LI 252


>gi|302542030|ref|ZP_07294372.1| two-component system, regulatory protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459648|gb|EFL22741.1| two-component system, regulatory protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 229

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EIA  L I+  TV  +I ++  KTA + R+ A+ YA R+ I
Sbjct: 157 LTPREAEVLALVAGGLSNPEIARRLMIAPATVKTHINNLFAKTAVRDRAQAVRYAYRHGI 216

Query: 246 V 246
            
Sbjct: 217 A 217


>gi|269217352|ref|ZP_06161206.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC
           700122]
 gi|269129489|gb|EEZ60574.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC
           700122]
          Length = 663

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             FK      G  F L+ RE E L +I  G +S  IA  L IS NTV  ++ +I RKT  
Sbjct: 590 TFFKQKAEEIGDAFRLSPREREILGYIGRGHSSVYIAKTLVISENTVYTHVRNIYRKTGA 649

Query: 231 KTR 233
            +R
Sbjct: 650 DSR 652


>gi|37223220|gb|AAQ90208.1| LuxR [Aliivibrio fischeri]
 gi|37223236|gb|AAQ90218.1| LuxR [Aliivibrio fischeri]
 gi|37223247|gb|AAQ90225.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE ECL W  EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|37223211|gb|AAQ90202.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE ECL W SEGK++ +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 185 LTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232


>gi|330860763|emb|CBX71053.1| nitrate/nitrite response regulator protein narP [Yersinia
           enterocolitica W22703]
          Length = 236

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174
           G+D R   LT   AR  +  M+       +L+D   EI L    LA+   N+F       
Sbjct: 103 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 162

Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 163 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 222

Query: 233 RSGAIAYAVRN 243
           R  A    + N
Sbjct: 223 RVAATIMYLEN 233


>gi|331005380|ref|ZP_08328764.1| Transcriptional activator protein vanR [gamma proteobacterium
           IMCC1989]
 gi|330420834|gb|EGG95116.1| Transcriptional activator protein vanR [gamma proteobacterium
           IMCC1989]
          Length = 271

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT +E E L WIS+G +  EI   + IS +TV+ Y+ SI +K  T      +  A+
Sbjct: 205 KKIPLTQKEEEILKWISKGLSKPEIGDKMNISSHTVSYYMRSIFKKMGTNNTVSTVIKAI 264

Query: 242 RNNIV 246
           +  ++
Sbjct: 265 KEELI 269


>gi|296130095|ref|YP_003637345.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
 gi|296021910|gb|ADG75146.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
          Length = 207

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE++ L  ++EG  + EIA  L  S  TV N +  +  +   + RS A+AYA+R  +
Sbjct: 147 LAAREIDVLKLVAEGYDTAEIAQHLAYSERTVKNVLHDVTTRLQLRNRSHAVAYALREGL 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|150004589|ref|YP_001299333.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254883067|ref|ZP_05255777.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294776747|ref|ZP_06742211.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|319643586|ref|ZP_07998206.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|149933013|gb|ABR39711.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254835860|gb|EET16169.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294449402|gb|EFG17938.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|317384755|gb|EFV65714.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 214

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ SG   YAV 
Sbjct: 146 EHELSVREIEVLILITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTVYAVM 205

Query: 243 NNIV 246
           N  +
Sbjct: 206 NGYI 209


>gi|229543630|ref|ZP_04432690.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
 gi|229328050|gb|EEN93725.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
          Length = 74

 Score = 43.1 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREKEVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|312132943|ref|YP_004000282.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773923|gb|ADQ03411.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
          Length = 248

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 246

Query: 245 IV 246
           +V
Sbjct: 247 LV 248


>gi|310639866|ref|YP_003944624.1| transcriptional regulatory protein degu (protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
 gi|309244816|gb|ADO54383.1| Transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
          Length = 217

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L+W+++G  + EIA  L IS  TV ++ +++M K   KTR   + +A++  +
Sbjct: 154 LSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLNLKTRPELVKFALKKGL 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|37223223|gb|AAQ90210.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE ECL W  EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|330685558|gb|EGG97204.1| response regulator protein VraR [Staphylococcus epidermidis VCU121]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|308070694|ref|YP_003872299.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
 gi|305859973|gb|ADM71761.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
          Length = 233

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A+   N F+          ELT RE+E L  +++GK++ +IA  L I   TV  ++ ++
Sbjct: 151 VASKMMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVTNL 210

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           + K   + R+ A  YA +N +
Sbjct: 211 LAKLGVEDRTQAAIYAYKNGL 231


>gi|293412200|ref|ZP_06654923.1| predicted protein [Escherichia coli B354]
 gi|291468971|gb|EFF11462.1| predicted protein [Escherichia coli B354]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201

Query: 240 AVRNNI 245
           A+R  +
Sbjct: 202 ALRMGV 207


>gi|291002981|ref|ZP_06560954.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I EG T+ EI+  + ++  TV NY++ ++ K A + RS A   A
Sbjct: 146 ELTAREREVLELIGEGLTNREISQRMFLAEKTVKNYVSQMLSKLAMRHRSEAAVLA 201


>gi|225593182|gb|ACN96099.1| two-component response regulator [Fischerella sp. MV11]
          Length = 221

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+ I++GKT+ EIA  L I+  TV  ++ +I+ K   + R+ A+  A++  +
Sbjct: 160 LTQREQEILSLIAQGKTNQEIAEALYITTGTVRVHVHTILHKLEVRDRTQAVIVAMQAGL 219

Query: 246 V 246
           +
Sbjct: 220 I 220


>gi|149925649|ref|ZP_01913913.1| regulatory protein, LuxR:Response regulator receiver [Limnobacter
           sp. MED105]
 gi|149825766|gb|EDM84974.1| regulatory protein, LuxR:Response regulator receiver [Limnobacter
           sp. MED105]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q N F+S     G    LT ++ + +  +S G+T  EIA ILG+S +TVN +I     + 
Sbjct: 115 QRNEFQSLIQMPGSPKPLTIKQAQVMEQVSLGRTGKEIAKILGMSPDTVNAHIKEAFGRL 174

Query: 229 ATKTRSGAIA-YAV 241
             + R  A++ Y+V
Sbjct: 175 GVQNRGEAVSNYSV 188


>gi|330468817|ref|YP_004406560.1| response regulator receiver protein [Verrucosispora maris
           AB-18-032]
 gi|328811788|gb|AEB45960.1| response regulator receiver protein [Verrucosispora maris
           AB-18-032]
          Length = 211

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E LT I++  T+ +IA   G+S  TV N++++I  K     R+ AI+ A
Sbjct: 151 ELTAREREILTLIAQHLTNPQIAARFGLSTKTVRNHVSNIFAKLQVADRAQAISMA 206


>gi|328542321|ref|YP_004302430.1| N-acyl homoserine lactone transcriptional regulator, LuxR-like
           protein [polymorphum gilvum SL003B-26A1]
 gi|326412068|gb|ADZ69131.1| Putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like protein [Polymorphum gilvum SL003B-26A1]
          Length = 230

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL WI+ GK++ EI+ ILGIS  TV  ++ ++  K        A+  A+   +
Sbjct: 168 LTRRERECLLWIAAGKSAWEISRILGISARTVYFHLDNVRAKMGVTNVYHAVVKAIMEGM 227

Query: 246 V 246
           +
Sbjct: 228 I 228


>gi|260881742|ref|ZP_05405135.2| DNA-binding response regulator VraR [Mitsuokella multacida DSM
           20544]
 gi|260848301|gb|EEX68308.1| DNA-binding response regulator VraR [Mitsuokella multacida DSM
           20544]
          Length = 223

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 38/74 (51%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  D     +  LT RE+E L  I +  + +EIA  LGI++ TVN +I +++ KT  K
Sbjct: 133 VIRGRDTFGAAEASLTERELEILQLICQSLSREEIAARLGIAKRTVNFHITNMLEKTGHK 192

Query: 232 TRSGAIAYAVRNNI 245
           +  G    A    +
Sbjct: 193 SIVGLAVEAAEKGL 206


>gi|134100444|ref|YP_001106105.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291005077|ref|ZP_06563050.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133913067|emb|CAM03180.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 221

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE +CL  + EG  +  +A  LG+S  TV  ++ S++ K    +R  A ++A+R+++
Sbjct: 145 LTARERQCLELLVEGAQTRAMARGLGVSSTTVRTHVQSVLTKLGVHSRLEAASFALRHSL 204

Query: 246 V 246
           +
Sbjct: 205 L 205


>gi|94500129|ref|ZP_01306663.1| regulatory protein, LuxR [Oceanobacter sp. RED65]
 gi|94427702|gb|EAT12678.1| regulatory protein, LuxR [Oceanobacter sp. RED65]
          Length = 753

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT +E E L  +++G ++ EIA  + ++  T+  ++ +I RK +  +RS A+AY  R
Sbjct: 689 ELTNKEKEVLMLLAQGLSNQEIADDMAVAATTIKWHLKNIYRKLSLDSRSAAVAYMHR 746


>gi|332280465|ref|ZP_08392878.1| transcriptional regulator [Shigella sp. D9]
 gi|332102817|gb|EGJ06163.1| transcriptional regulator [Shigella sp. D9]
          Length = 158

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 90  YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 149

Query: 240 AVRNNI 245
           A+R  +
Sbjct: 150 ALRMGV 155


>gi|319652028|ref|ZP_08006149.1| LuxR family Two component transcriptional regulator [Bacillus sp.
           2_A_57_CT2]
 gi|317396319|gb|EFV77036.1| LuxR family Two component transcriptional regulator [Bacillus sp.
           2_A_57_CT2]
          Length = 217

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT I++G ++ +IA  L IS  TV  +  ++M K   KTR   +AYA++  +
Sbjct: 153 LSDREKEVLTLIAKGFSNKDIAEQLVISVKTVETHKGNLMEKLQMKTRPELVAYALKKGL 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|104781277|ref|YP_607775.1| response regulator [Pseudomonas entomophila L48]
 gi|95110264|emb|CAK14971.1| putative response regulator, LuxR family [Pseudomonas entomophila
           L48]
          Length = 130

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT R+ E L  +  G  S E+A  LG+S  TVNN++  +MR      R+ A++ A+
Sbjct: 59  LTRRQQEILQLLHRGLASKEVAAELGLSLGTVNNHVTGLMRVLGVTNRTHAVSRAM 114


>gi|37223202|gb|AAQ90196.1| LuxR [Vibrio fischeri ES114]
          Length = 230

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE ECL W SEGK++ +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 183 LTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 230


>gi|110637722|ref|YP_677929.1| response regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110280403|gb|ABG58589.1| response regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 164 LLAAYQANMFKSYDVHWG---KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           L++ Y + + ++  +  G    ++ELT RE   L  I++GK + EIA  LGIS  T+  +
Sbjct: 135 LVSGYLSKVKQTDSIQSGYSNDEYELTKREKGILKMITDGKNNREIADGLGISIRTIETH 194

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
            A+IM+K   K     +  A+   IV
Sbjct: 195 RANIMKKLKVKNAVELVRIAIDEKIV 220


>gi|332974286|gb|EGK11218.1| hypothetical protein HMPREF9374_2036 [Desmospora sp. 8437]
          Length = 438

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++  I  IL IS +T   Y  +I+RK   K R  A+A   R  +
Sbjct: 377 LTRREQELLQMIAYGYSTKHIGEILHISEHTAAEYAQTILRKLNAKNRPEAVAKGFRLGM 436

Query: 246 V 246
           +
Sbjct: 437 I 437


>gi|288553643|ref|YP_003425578.1| transcriptional regulator [Bacillus pseudofirmus OF4]
 gi|288544803|gb|ADC48686.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus pseudofirmus OF4]
          Length = 74

 Score = 43.1 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTREIAQELFISEKTVRNHISNTMQKLGVKGRSQAVIELIR 68


>gi|255535518|ref|YP_003095889.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
 gi|255341714|gb|ACU07827.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
          Length = 218

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I EG  + EIA  L IS +TV ++  +IM+K   ++ S  + +A+ NN
Sbjct: 156 ELTVREKEVLHHICEGLRTREIADELFISPHTVESHRRNIMQKLDVRSSSMLVKFAMNNN 215

Query: 245 IV 246
           +V
Sbjct: 216 LV 217


>gi|218706350|ref|YP_002413869.1| hypothetical protein ECUMN_3185 [Escherichia coli UMN026]
 gi|293406343|ref|ZP_06650269.1| predicted protein [Escherichia coli FVEC1412]
 gi|298382079|ref|ZP_06991676.1| response regulatory protein ygeK [Escherichia coli FVEC1302]
 gi|331664414|ref|ZP_08365320.1| putative 2-component transcriptional regulator [Escherichia coli
           TA143]
 gi|218433447|emb|CAR14349.1| conserved hypothetical protein, putative Bacterial regulatory
           protein LuxR family [Escherichia coli UMN026]
 gi|284922792|emb|CBG35880.1| putative two-component response regulator [Escherichia coli 042]
 gi|291426349|gb|EFE99381.1| predicted protein [Escherichia coli FVEC1412]
 gi|298277219|gb|EFI18735.1| response regulatory protein ygeK [Escherichia coli FVEC1302]
 gi|323978530|gb|EGB73612.1| luxR family protein regulatory protein [Escherichia coli TW10509]
 gi|331058345|gb|EGI30326.1| putative 2-component transcriptional regulator [Escherichia coli
           TA143]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201

Query: 240 AVRNNI 245
           A+R  +
Sbjct: 202 ALRMGV 207


>gi|37223217|gb|AAQ90206.1| LuxR [Aliivibrio fischeri]
          Length = 233

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE ECL W  EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|37520140|ref|NP_923517.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211133|dbj|BAC88512.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 217

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L WI+ G ++ EI   L IS  TV  ++ +I+RK     R+ A   A+   +
Sbjct: 154 LTEREREVLGWIARGASNPEIGRQLHISSGTVRVHVHAILRKLGATDRTQAAVLALEKGL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|258592075|emb|CBE68380.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 89

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 27/42 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT REVE LTW+++GKT+ EI  IL  S  TV  ++  I  K
Sbjct: 20  LTRREVEVLTWVTDGKTNAEIGEILDTSPRTVQKHLEHIFEK 61


>gi|293416096|ref|ZP_06658736.1| response regulatory protein ygeK [Escherichia coli B185]
 gi|331654339|ref|ZP_08355339.1| putative 2-component transcriptional regulator [Escherichia coli
           M718]
 gi|291432285|gb|EFF05267.1| response regulatory protein ygeK [Escherichia coli B185]
 gi|331047721|gb|EGI19798.1| putative 2-component transcriptional regulator [Escherichia coli
           M718]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201

Query: 240 AVRNNI 245
           A+R  +
Sbjct: 202 ALRMGV 207


>gi|270262679|ref|ZP_06190950.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043363|gb|EFA16456.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 950

 Score = 43.1 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S+DV+WG    L+ RE++ L  I+EG+T+ +IA  L IS  TV  ++ +   K    +R+
Sbjct: 882 SHDVYWG----LSERELQVLRLIAEGQTNKDIARSLAISAQTVKWHLKNTYAKLNVNSRT 937

Query: 235 GAIAYAV 241
            A++ A+
Sbjct: 938 QAMSRAL 944


>gi|189439534|ref|YP_001954615.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|189427969|gb|ACD98117.1| Putative response regulator [Bifidobacterium longum DJO10A]
          Length = 248

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 246

Query: 245 IV 246
           +V
Sbjct: 247 LV 248


>gi|15832966|ref|NP_311739.1| hypothetical protein ECs3712 [Escherichia coli O157:H7 str. Sakai]
 gi|168747683|ref|ZP_02772705.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168753777|ref|ZP_02778784.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168759967|ref|ZP_02784974.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168766832|ref|ZP_02791839.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168775716|ref|ZP_02800723.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168778853|ref|ZP_02803860.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168799972|ref|ZP_02824979.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|195936460|ref|ZP_03081842.1| hypothetical protein EscherichcoliO157_08342 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808850|ref|ZP_03251187.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208813228|ref|ZP_03254557.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208818554|ref|ZP_03258874.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209398226|ref|YP_002272320.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217327388|ref|ZP_03443471.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254794795|ref|YP_003079632.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|20140955|sp|P58664|YGEK_ECO57 RecName: Full=Uncharacterized response regulatory protein ygeK
 gi|13363184|dbj|BAB37135.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768739|gb|EDU32583.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188017817|gb|EDU55939.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189003396|gb|EDU72382.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189358682|gb|EDU77101.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189363784|gb|EDU82203.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189369373|gb|EDU87789.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189377667|gb|EDU96083.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|208728651|gb|EDZ78252.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208734505|gb|EDZ83192.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208738677|gb|EDZ86359.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209159626|gb|ACI37059.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209747612|gb|ACI72113.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|209747614|gb|ACI72114.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|209747616|gb|ACI72115.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|217319755|gb|EEC28180.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254594195|gb|ACT73556.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|320189186|gb|EFW63845.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. EC1212]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201

Query: 240 AVRNNI 245
           A+R  +
Sbjct: 202 ALRMGV 207


>gi|317482273|ref|ZP_07941294.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916289|gb|EFV37690.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 248

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 187 ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 246

Query: 245 IV 246
           +V
Sbjct: 247 LV 248


>gi|297204156|ref|ZP_06921553.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714163|gb|EDY58197.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 232

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE + LT ++ G+++ EIA  L I+  TV +++++I+ K   + R  A+ +A  + +
Sbjct: 162 LTGRERDVLTAVASGESNAEIADRLCIAPTTVKSHVSNILTKIGARGRVQAVVFAYESGL 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|15596627|ref|NP_250121.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAO1]
 gi|116049375|ref|YP_791822.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892698|ref|YP_002441567.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58]
 gi|254234529|ref|ZP_04927852.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719]
 gi|254239780|ref|ZP_04933102.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192]
 gi|313106426|ref|ZP_07792658.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016]
 gi|125980|sp|P25084|LASR_PSEAE RecName: Full=Transcriptional activator protein lasR
 gi|9947379|gb|AAG04819.1|AE004572_7 transcriptional regulator LasR [Pseudomonas aeruginosa PAO1]
 gi|151326|gb|AAA25874.1| transcriptional activator LasR [Pseudomonas aeruginosa PAO1]
 gi|115584596|gb|ABJ10611.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166460|gb|EAZ51971.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719]
 gi|126193158|gb|EAZ57221.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192]
 gi|156106986|gb|ABU49653.1| LasR [Pseudomonas sp. M18]
 gi|218772926|emb|CAW28738.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58]
 gi|310879160|gb|EFQ37754.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016]
          Length = 239

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A Q+    +++    K   LT RE E L W + GKTS EI+VI   S   VN ++ +I R
Sbjct: 158 ALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    +R  A   AV   ++
Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237


>gi|91976846|ref|YP_569505.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91683302|gb|ABE39604.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
          Length = 248

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 40/60 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  ++E L++++ G ++ +IA   G+S NTV + +A++++K     R+ A  +AVRN+
Sbjct: 180 ELTRPQIELLSYLANGMSNRQIAKERGMSINTVKSQVATVIQKLNVTNRTQAALFAVRNS 239


>gi|331019185|gb|EGH99241.1| transcriptional regulator PsyR [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 247

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + L W++ GK   EIA I  IS  TV  +++++  K   +T   A+  A++  
Sbjct: 186 KLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMG 245

Query: 245 IV 246
           +V
Sbjct: 246 MV 247


>gi|323528655|ref|YP_004230807.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385657|gb|ADX57747.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001]
          Length = 242

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  
Sbjct: 178 KLTPRERECLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLG 237

Query: 245 IV 246
           ++
Sbjct: 238 LI 239


>gi|302387016|ref|YP_003822838.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
 gi|302197644|gb|ADL05215.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LTGRE + LT +++G T  EIA  L +S + +  ++ASI  K     +  A+  A  
Sbjct: 150 DIPLTGRETQVLTLLAQGLTQREIAEELFLSVSCIKKHLASIYSKLNVNNKISAVQKARE 209

Query: 243 NNIV 246
           +NI+
Sbjct: 210 SNIL 213


>gi|315505327|ref|YP_004084214.1| transcriptional regulator, luxr family [Micromonospora sp. L5]
 gi|315411946|gb|ADU10063.1| transcriptional regulator, LuxR family [Micromonospora sp. L5]
          Length = 207

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG  ++EIA  L  S  TV N I  +  +   + RS A+AYA+R+ +
Sbjct: 147 LTAREIDVLRLMAEGFDTNEIADELRYSERTVKNVIYGLNHRLKLRNRSHAVAYALRSGM 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|260662950|ref|ZP_05863843.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|260552571|gb|EEX25571.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 217

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 181 GKDFELTG------REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G D  LTG      RE E    ++ G T+ EIA  L IS  TV  + A+I+RK   +TR+
Sbjct: 144 GVDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRA 203

Query: 235 GAIAYAVRNNIV 246
             + YA+ ++++
Sbjct: 204 DLVRYAIHHHLI 215


>gi|134101423|ref|YP_001107084.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133914046|emb|CAM04159.1| probable transcriptional regulator, LuxR family [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 84

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++LT RE++ +T ++ G ++ EIA  L +SR TV+ ++  I+ K A  +R+   A A R 
Sbjct: 12  YDLTVRELQIVTLLAVGASNPEIADALVVSRRTVSTHVEHILAKLAVASRAEVAALAARE 71

Query: 244 NI 245
            +
Sbjct: 72  GL 73


>gi|23099565|ref|NP_693031.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22777795|dbj|BAC14066.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 74

 Score = 43.1 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREKEVFELLVQDKTTKEIAQELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|330973265|gb|EGH73331.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 240

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|209527179|ref|ZP_03275692.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209492428|gb|EDZ92770.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 208

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  + EGK++ EIA  L +S NT+  ++  IM K A   R      A+R+ +
Sbjct: 148 LSPRELEVLKLMVEGKSNPEIAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|254425578|ref|ZP_05039295.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188001|gb|EDX82966.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+EGKT+ +I+  L I+ +TV  ++  I+ K     R+ AI  AV   I
Sbjct: 147 LSTREQEVLQLIAEGKTNLQISAELTIAASTVRFHVGHILDKLGVSDRTQAIVQAVNQGI 206

Query: 246 V 246
           V
Sbjct: 207 V 207


>gi|134100027|ref|YP_001105688.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912650|emb|CAM02763.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 217

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I EG T+ EI+  + ++  TV NY++ ++ K A + RS A   A
Sbjct: 150 ELTAREREVLELIGEGLTNREISQRMFLAEKTVKNYVSQMLSKLAMRHRSEAAVLA 205


>gi|157162307|ref|YP_001459625.1| LuxR family transcriptional regulator [Escherichia coli HS]
 gi|170018901|ref|YP_001723855.1| two component LuxR family transcriptional regulator [Escherichia
           coli ATCC 8739]
 gi|157067987|gb|ABV07242.1| transcriptional regulator, LuxR family [Escherichia coli HS]
 gi|169753829|gb|ACA76528.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|323941628|gb|EGB37808.1| luxR family protein regulatory protein [Escherichia coli E482]
 gi|332344746|gb|AEE58080.1| response regulator protein [Escherichia coli UMNK88]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201

Query: 240 AVRNNI 245
           A+R  +
Sbjct: 202 ALRMGV 207


>gi|2394388|gb|AAC46165.1| MxaB [Methylobacterium extorquens AM1]
          Length = 208

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV--RN 243
           L+ RE++ L+ +S+GK+ D IA  + +S  T+ N  +S+ +K   ++R+G +  AV  RN
Sbjct: 146 LSARELQILSLLSQGKSYDAIASAMAVSYRTIINASSSMRKKLGVESRAGLVQIAVNRRN 205

Query: 244 NIV 246
            ++
Sbjct: 206 ALL 208


>gi|57652103|ref|YP_186767.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751537|ref|YP_417278.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87161005|ref|YP_494517.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195780|ref|YP_500589.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222034|ref|YP_001332856.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161510103|ref|YP_001575762.1| response regulator VraR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141457|ref|ZP_03565950.1| response regulator VraR [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253734427|ref|ZP_04868592.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451050|ref|ZP_05699086.1| two-component system response regulator [Staphylococcus aureus
           A5948]
 gi|262050230|ref|ZP_06023081.1| two-component response regulator [Staphylococcus aureus D30]
 gi|262052884|ref|ZP_06025068.1| two-component response regulator [Staphylococcus aureus 930918-3]
 gi|282923220|ref|ZP_06330901.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9765]
 gi|284024930|ref|ZP_06379328.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|294849429|ref|ZP_06790171.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9754]
 gi|304379068|ref|ZP_07361815.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|81694172|sp|Q5HEP0|VRAR_STAAC RecName: Full=Response regulator protein vraR
 gi|57286289|gb|AAW38383.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82657068|emb|CAI81505.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87126979|gb|ABD21493.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203338|gb|ABD31148.1| DNA-binding response regulator VraR, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|150374834|dbj|BAF68094.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368912|gb|ABX29883.1| response regulator VraR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253727580|gb|EES96309.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257861292|gb|EEV84104.1| two-component system response regulator [Staphylococcus aureus
           A5948]
 gi|259159238|gb|EEW44298.1| two-component response regulator [Staphylococcus aureus 930918-3]
 gi|259161692|gb|EEW46283.1| two-component response regulator [Staphylococcus aureus D30]
 gi|269941355|emb|CBI49752.1| response regulator VraR [Staphylococcus aureus subsp. aureus TW20]
 gi|282593131|gb|EFB98130.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9765]
 gi|294823566|gb|EFG39993.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9754]
 gi|298695222|gb|ADI98444.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300078692|gb|ADJ67243.1| VraR [Staphylococcus aureus]
 gi|300078695|gb|ADJ67245.1| VraR [Staphylococcus aureus]
 gi|300078698|gb|ADJ67247.1| VraR [Staphylococcus aureus]
 gi|302751756|gb|ADL65933.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342303|gb|EFM08195.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315196046|gb|EFU26406.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139738|gb|EFW31607.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142346|gb|EFW34160.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323439154|gb|EGA96882.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323441562|gb|EGA99212.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329728633|gb|EGG65063.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|20141967|sp|Q46791|YGEK_ECOLI RecName: Full=Putative uncharacterized response regulatory protein
           ygeK
          Length = 210

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 142 YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 201

Query: 240 AVRNNI 245
           A+R  +
Sbjct: 202 ALRMGV 207


>gi|329314560|gb|AEB88973.1| Response regulator protein vraR [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|107100865|ref|ZP_01364783.1| hypothetical protein PaerPA_01001895 [Pseudomonas aeruginosa PACS2]
 gi|296390203|ref|ZP_06879678.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAb1]
          Length = 223

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A Q+    +++    K   LT RE E L W + GKTS EI+VI   S   VN ++ +I R
Sbjct: 142 ALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 201

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    +R  A   AV   ++
Sbjct: 202 KFGVTSRRVAAIMAVNLGLI 221


>gi|282862337|ref|ZP_06271399.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562676|gb|EFB68216.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 222

 Score = 43.1 bits (100), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  I+EG ++ EIA  L +S  TV  +I ++  KT  + R+ A+ YA
Sbjct: 154 LTPREAEVLVLIAEGLSNREIARALHVSAATVKTHINNLFAKTGARDRTQAVRYA 208


>gi|254467179|ref|ZP_05080590.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
 gi|206688087|gb|EDZ48569.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
          Length = 231

 Score = 43.1 bits (100), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  I EGK + +IA  L I+  TV  +I +IMRK   ++R+ A+  A
Sbjct: 160 QLTNQQARILQLICEGKLNKQIAYDLSIAETTVKAHITAIMRKLGVQSRTQAVLAA 215


>gi|166368199|ref|YP_001660472.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
 gi|166090572|dbj|BAG05280.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
          Length = 93

 Score = 43.1 bits (100), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  ++ G T+ EI+  L IS+ TV+N+I++I+ KT T  R   + +A+ 
Sbjct: 12  LSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWALH 68


>gi|124006802|ref|ZP_01691632.1| two-component response regulator [Microscilla marina ATCC 23134]
 gi|123987483|gb|EAY27192.1| two-component response regulator [Microscilla marina ATCC 23134]
          Length = 208

 Score = 43.1 bits (100), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L ++ EG ++ EIA  L IS  TV+N+ A+I++K   K     + +A+ + 
Sbjct: 147 QLSAREKEVLHFLVEGLSNKEIADKLFISSKTVDNHRANILKKLNLKNNVQLVRFALEHK 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|541657|dbj|BAA06489.1| LasR [Pseudomonas aeruginosa]
          Length = 239

 Score = 43.1 bits (100), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A Q+    +++    K   LT RE E L W + GKTS EI+VI   S   VN ++ +I R
Sbjct: 158 ALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    +R  A   AV   ++
Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237


>gi|304312346|ref|YP_003811944.1| Response regulator, LuxR family [gamma proteobacterium HdN1]
 gi|301798079|emb|CBL46301.1| Response regulator, LuxR family [gamma proteobacterium HdN1]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    IS  +T  EIA  L IS  TV+ Y   I+ K    T +  + YA+R+++
Sbjct: 148 LSKREFEVFLLISSARTPTEIATQLNISPKTVSTYRTRILEKMNMTTNAEVMQYAIRHDL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|184155547|ref|YP_001843887.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|183226891|dbj|BAG27407.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
          Length = 217

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 181 GKDFELTG------REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G D  LTG      RE E    ++ G T+ EIA  L IS  TV  + A+I+RK   +TR+
Sbjct: 144 GVDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRA 203

Query: 235 GAIAYAVRNNIV 246
             + YA+ ++++
Sbjct: 204 DLVRYAIHHHLI 215


>gi|66045102|ref|YP_234943.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63255809|gb|AAY36905.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 240

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|23100305|ref|NP_693772.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778537|dbj|BAC14806.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 199

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+ + +   LT RE + L  I++GKT+ EIA  L ++  TV NY+++IM K     R  A
Sbjct: 129 DMAYEEGNPLTTREEQVLKLIADGKTTKEIAGQLYLTNGTVRNYVSTIMDKLNVSNRIEA 188

Query: 237 IA 238
           I+
Sbjct: 189 IS 190


>gi|284045278|ref|YP_003395618.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949499|gb|ADB52243.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 519

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ E+A  L I+  T  N++  +  K    +R+ A  YA+R+ +
Sbjct: 458 LTARELEVLVLVARGASAREVAGELVIAEKTARNHVECVYGKLGVSSRAEATLYAMRHGL 517

Query: 246 V 246
           V
Sbjct: 518 V 518


>gi|302868292|ref|YP_003836929.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|302571151|gb|ADL47353.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
          Length = 207

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG  ++EIA  L  S  TV N I  +  +   + RS A+AYA+R+ +
Sbjct: 147 LTAREIDVLRLMAEGFDTNEIADELRYSERTVKNVIYGLNHRLKLRNRSHAVAYALRSGM 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|242241722|ref|ZP_04796167.1| response regulator [Staphylococcus epidermidis W23144]
 gi|242234812|gb|EES37123.1| response regulator [Staphylococcus epidermidis W23144]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|255530955|ref|YP_003091327.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255343939|gb|ACU03265.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 267

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 44/73 (60%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++Y   + +D  L+  E + L ++++G +S +IA    IS NTV N+  ++++KT TK  
Sbjct: 195 ENYFFPYAEDKLLSHHERDILCYMADGLSSKQIASRFNISENTVANHRKNMLKKTNTKNV 254

Query: 234 SGAIAYAVRNNIV 246
           +  +++A +  ++
Sbjct: 255 AELVSFACKTQLI 267


>gi|163853534|ref|YP_001641577.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218532393|ref|YP_002423209.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|240140953|ref|YP_002965433.1| MxaB [Methylobacterium extorquens AM1]
 gi|163665139|gb|ABY32506.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218524696|gb|ACK85281.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
 gi|240010930|gb|ACS42156.1| MxaB [Methylobacterium extorquens AM1]
          Length = 225

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV--RN 243
           L+ RE++ L+ +S+GK+ D IA  + +S  T+ N  +S+ +K   ++R+G +  AV  RN
Sbjct: 163 LSARELQILSLLSQGKSYDAIASAMAVSYRTIINASSSMRKKLGVESRAGLVQIAVNRRN 222

Query: 244 NIV 246
            ++
Sbjct: 223 ALL 225


>gi|71907962|ref|YP_285549.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71847583|gb|AAZ47079.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 211

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F   +   G   +LT R+ E L  ++ G+T+ EIA  LGIS  TV  + + +M +     
Sbjct: 137 FSDAEGTSGSGTQLTARQTEILRLVASGRTTKEIARDLGISPKTVEFHRSRLMERIGVHD 196

Query: 233 RSGAIAYAVRNNIV 246
            +G   +A++  +V
Sbjct: 197 VTGLTRFALQTGVV 210


>gi|27468487|ref|NP_765124.1| two-component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|57867340|ref|YP_188991.1| DNA-binding response regulator VraR [Staphylococcus epidermidis
           RP62A]
 gi|251809910|ref|ZP_04824383.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874566|ref|ZP_06283451.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367802|ref|ZP_06614451.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674015|sp|Q5HN50|VRAR_STAEQ RecName: Full=Response regulator protein vraR
 gi|81842704|sp|Q8CNP9|VRAR_STAES RecName: Full=Response regulator protein vraR
 gi|27316034|gb|AAO05168.1|AE016749_114 two-component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|57637998|gb|AAW54786.1| DNA-binding response regulator VraR [Staphylococcus epidermidis
           RP62A]
 gi|251806575|gb|EES59232.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296705|gb|EFA89214.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318141|gb|EFE58538.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726870|gb|EGG63328.1| response regulator protein VraR [Staphylococcus epidermidis VCU144]
 gi|329734717|gb|EGG71023.1| response regulator protein VraR [Staphylococcus epidermidis VCU045]
 gi|329734803|gb|EGG71108.1| response regulator protein VraR [Staphylococcus epidermidis VCU028]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|329957447|ref|ZP_08297922.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
 gi|328522324|gb|EGF49433.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
          Length = 238

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +L+ RE+E L  I++G  + EIA  L IS  TV  +  +I+ K   K+ SG   YAV 
Sbjct: 170 DHDLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVM 229

Query: 243 NNIV 246
           +  +
Sbjct: 230 HGYI 233


>gi|316931973|ref|YP_004106955.1| autoinducer-binding domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315599687|gb|ADU42222.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 242

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           L+ RE ECL W + GK++ +I  ILGIS +T  +Y+ +   K   +T
Sbjct: 179 LSAREFECLEWAARGKSAWDIGRILGISHHTAISYLNNAKAKLGVRT 225


>gi|308175685|ref|YP_003922390.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608549|emb|CBI44920.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328555666|gb|AEB26158.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           TA208]
 gi|328914044|gb|AEB65640.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           LL3]
          Length = 199

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +G++  LT RE   L  +++GK + EIA  L I   TV NY++ I+ K   K R  AI
Sbjct: 132 YGEENPLTEREKAVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNRIEAI 189


>gi|269139570|ref|YP_003296271.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202]
 gi|267985231|gb|ACY85060.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202]
 gi|304559458|gb|ADM42122.1| Transcriptional regulator CsgD [Edwardsiella tarda FL6-60]
          Length = 210

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L  + +G ++ +I+ IL IS NTV  +I +I +K A K R  A+ +A
Sbjct: 150 LTLRELEVLKAMQQGASNLDISRILYISENTVRTHIYNIFKKIAVKNRIQAVKWA 204


>gi|229145112|ref|ZP_04273504.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|228638310|gb|EEK94748.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
          Length = 304

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG 181
           G D  Y   + D   +   + L++  G +I  D   R+WE       +  +F+S     G
Sbjct: 186 GADG-YVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWE----ENKETGLFESRSD--G 238

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ L+ RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A
Sbjct: 239 IEYGLSKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 297


>gi|229818904|ref|YP_002880430.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564817|gb|ACQ78668.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 218

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LTGRE E L  ++ G+T+ EIA  L +  +TV  ++AS+M K   + R
Sbjct: 155 LTGREEEVLALVARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNR 202


>gi|160898821|ref|YP_001564403.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160364405|gb|ABX36018.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 259

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+ +A
Sbjct: 199 LSTREREVLRMVASGYTSAEIGSRLMISAMTVNTHIKNIYRKLQVRTRAQAVRFA 253


>gi|49082134|gb|AAT50467.1| PA1430 [synthetic construct]
          Length = 240

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A Q+    +++    K   LT RE E L W + GKTS EI+VI   S   VN ++ +I R
Sbjct: 158 ALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    +R  A   AV   ++
Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237


>gi|73662218|ref|YP_300999.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|88952438|sp|Q49YS9|VRAR_STAS1 RecName: Full=Response regulator protein vraR
 gi|72494733|dbj|BAE18054.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 148 LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|119715592|ref|YP_922557.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119536253|gb|ABL80870.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 217

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+D  LT RE E L  I++G ++ EIA    +S N+V  YI +  RK     R+ A+A+ 
Sbjct: 141 GRDVGLTAREAEVLALITQGLSNQEIAEHTYLSINSVKTYIRTAYRKIEVTRRAQAVAWG 200

Query: 241 VRNN 244
           + + 
Sbjct: 201 MTHG 204


>gi|330878281|gb|EGH12430.1| transcriptional regulator PsyR [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + L W++ GK   EIA I  IS  TV  +++++  K   +T   A+  A++  
Sbjct: 186 KLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMG 245

Query: 245 IV 246
           +V
Sbjct: 246 MV 247


>gi|319948162|ref|ZP_08022323.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea
           P4]
 gi|319438174|gb|EFV93133.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea
           P4]
          Length = 294

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ L  +++GKT+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 233 LSRRELDVLACVAQGKTNIETAADMGIGAETVKSYLRSVMRKLDAHTRFEAVNAARR 289


>gi|269836188|ref|YP_003318416.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785451|gb|ACZ37594.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 216

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 185 ELTGREVECLTWISEGKTSD-EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE E L  + +G TS+ ++A  L +S NTV  ++ +I+ K   + R+  IAYA+R+
Sbjct: 149 ELTEREREVLELLVQGVTSNKDLADRLFVSENTVKYHLRNILNKLHLQNRAQVIAYALRH 208

Query: 244 NIV 246
            +V
Sbjct: 209 GLV 211


>gi|257056663|ref|YP_003134495.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256586535|gb|ACU97668.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 239

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L+ +++G ++ EIA  L +   TV  +++ I+ K   + R+ A+ +A  N 
Sbjct: 173 ELTDREFEVLSLLAKGASNAEIARQLVLGETTVKTHVSRILTKLNLRDRTHAVVFAYENG 232

Query: 245 IV 246
           IV
Sbjct: 233 IV 234


>gi|91780463|ref|YP_555670.1| LuxR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693123|gb|ABE36320.1| transcriptional regulator, LuxR family [Burkholderia xenovorans
           LB400]
          Length = 262

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  ++ CLTW++ GKTS EI  ILG S  TV+ ++   M       R+ A   A    +
Sbjct: 200 LTPCQIVCLTWVARGKTSAEIGEILGCSHYTVDYHVKKAMEALNIWGRTAAAVQATVQGL 259

Query: 246 V 246
           +
Sbjct: 260 I 260


>gi|28871016|ref|NP_793635.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|13182979|gb|AAK15017.1|AF234628_3 PsmR [Pseudomonas syringae pv. maculicola]
 gi|28854266|gb|AAO57330.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + L W++ GK   EIA I  IS  TV  +++++  K   +T   A+  A++  
Sbjct: 186 KLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMG 245

Query: 245 IV 246
           +V
Sbjct: 246 MV 247


>gi|298247492|ref|ZP_06971297.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297550151|gb|EFH84017.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 886

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+E L  I+EG ++ EIA  L +S  TV  +  +I  K +  +R+ A+A A R N+
Sbjct: 826 LSGRELEVLGLIAEGLSNSEIARRLVLSVGTVKVHTRNIYGKLSVSSRTQALAQATRLNL 885


>gi|182414741|ref|YP_001819807.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177841955|gb|ACB76207.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 223

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  + +G+++ EIA  L IS +TV +++ ++  K   + R+GA   A+R+ 
Sbjct: 159 QLTERERDVLESLIKGRSNKEIASSLCISEDTVKSHLKTLFAKLRVRDRTGAAIEAIRHG 218

Query: 245 IV 246
           IV
Sbjct: 219 IV 220


>gi|331699103|ref|YP_004335342.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953792|gb|AEA27489.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 198

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +S+GK++ +I   L +S +TV  +   + RK   + R+ A+A+  R  
Sbjct: 136 QLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRG 195

Query: 245 IV 246
           +V
Sbjct: 196 LV 197


>gi|294501457|ref|YP_003565157.1| spore germination regulator [Bacillus megaterium QM B1551]
 gi|295706805|ref|YP_003599880.1| spore germination regulator [Bacillus megaterium DSM 319]
 gi|294351394|gb|ADE71723.1| spore germination regulator [Bacillus megaterium QM B1551]
 gi|294804464|gb|ADF41530.1| spore germination regulator [Bacillus megaterium DSM 319]
          Length = 74

 Score = 42.7 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|295691166|ref|YP_003594859.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295433069|gb|ADG12241.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC
           21756]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE++CL W + GKT  +IA I+GI+  TV  ++ +   K     R+ AI
Sbjct: 184 LTKREIQCLKWAAAGKTDADIAQIIGIAGPTVRFHVQNAALKLRVAGRAQAI 235


>gi|290955190|ref|YP_003486372.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644716|emb|CBG67801.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  +T RE E L  ++EG +S EIA +L IS  TV+ + A+++ K   + R     YA+R
Sbjct: 156 DQVVTPREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIR 215

Query: 243 NNIV 246
             ++
Sbjct: 216 AGLI 219


>gi|288940382|ref|YP_003442622.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288895754|gb|ADC61590.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 208

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E +  +++GK++ EIA  LG+S  TV  + A +M     K R+ ++A  VR  
Sbjct: 144 ELTPREHEVMAMVTDGKSNKEIAAALGVSAKTVEAHRARVME----KMRAESLAELVRMA 199

Query: 245 IV 246
           ++
Sbjct: 200 LI 201


>gi|111021259|ref|YP_704231.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820789|gb|ABG96073.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 881

 Score = 42.7 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +   +T+++IA  L +S NTV  ++  I RK    +R  AIA A  N +
Sbjct: 821 LTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYRKLGVTSRRDAIAAAQHNGL 880

Query: 246 V 246
           +
Sbjct: 881 L 881


>gi|158315976|ref|YP_001508484.1| LuxR family GAF modulated transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111381|gb|ABW13578.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 285

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F L+ RE++ L  ++EG ++ E A  L +S  TV  Y+ SIM K     R+ A+  A 
Sbjct: 220 QPFGLSPRELDVLRLVAEGMSNAETARRLAVSPETVKAYLRSIMNKLGVHNRTAAVNVAR 279

Query: 242 RNNIV 246
           R++++
Sbjct: 280 RSSLL 284


>gi|325293391|ref|YP_004279255.1| transcriptional regulator, MerR family [Agrobacterium sp. H13-3]
 gi|325061244|gb|ADY64935.1| transcriptional regulator, MerR family [Agrobacterium sp. H13-3]
          Length = 231

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKD  LT  E +CL  ++EG     +A  LG+S N +N   A I+ K +   R  A+A A
Sbjct: 164 GKDIALTDNERKCLELMAEGYAPVRLARALGLSGNDLNELEAKIIGKFSASNRFQAVAKA 223

Query: 241 V 241
           V
Sbjct: 224 V 224


>gi|298250271|ref|ZP_06974075.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
 gi|297548275|gb|EFH82142.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
          Length = 1070

 Score = 42.7 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 185  ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +LT REVE L  ++ G T+ +IA  L IS  TV  +++SI  K    +RS A  YA+ ++
Sbjct: 1009 DLTEREVEVLRSLATGLTNAQIAEQLVISPRTVQAHLSSIYNKIGVSSRSAATRYALEHH 1068

Query: 245  I 245
            +
Sbjct: 1069 L 1069


>gi|149183304|ref|ZP_01861745.1| transcriptional regulator [Bacillus sp. SG-1]
 gi|148848997|gb|EDL63206.1| transcriptional regulator [Bacillus sp. SG-1]
          Length = 74

 Score = 42.7 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREKEVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|2367439|gb|AAB69646.1| LuxR homolog [Pectobacterium betavasculorum]
          Length = 242

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K        AI   V 
Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234


>gi|298505405|gb|ADI84128.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 216

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EGK + E+A  L +S  TV +    IMRK  T + +    +A+R  +
Sbjct: 153 LTPREREVLQLIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSIADMTKFAIREGL 212


>gi|320012198|gb|ADW07048.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 987

 Score = 42.7 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E    ++EG T+  IA  L +S  TV  +++ + RKT   TR+G  A   R+
Sbjct: 930 LTAREREVAGMVAEGLTNQAIATRLFLSPRTVETHVSRVFRKTGVATRAGLAALMARS 987


>gi|254563463|ref|YP_003070558.1| MxaB [Methylobacterium extorquens DM4]
 gi|254270741|emb|CAX26746.1| MxaB [Methylobacterium extorquens DM4]
          Length = 225

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV--RN 243
           L+ RE++ L+ +S+GK+ D IA  + +S  T+ N  +S+ +K   ++R+G +  AV  RN
Sbjct: 163 LSARELQILSLLSQGKSYDAIASAMAVSYRTIINASSSMRKKLGVESRAGLVQIAVNRRN 222

Query: 244 NIV 246
            ++
Sbjct: 223 ALL 225


>gi|254448074|ref|ZP_05061537.1| response regulator, NarL-family [gamma proteobacterium HTCC5015]
 gi|198262200|gb|EDY86482.1| response regulator, NarL-family [gamma proteobacterium HTCC5015]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE + L  I++G T  +   +LGISRNT   Y+  I RK    +R+ A   A R
Sbjct: 148 LTQREHDVLALIAKGYTVKKAGELLGISRNTCAGYVKDIYRKLQISSRAEATVEASR 204


>gi|188583806|ref|YP_001927251.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347304|gb|ACB82716.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 226

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV--RN 243
           L+ RE++ L+ +S+GK+ D IA  + +S  T+ N  +S+ +K   ++R+G +  AV  RN
Sbjct: 164 LSARELQILSLLSQGKSYDAIASAMAVSYRTIINASSSMRKKLGVESRAGLVQIAVNRRN 223

Query: 244 NIV 246
            ++
Sbjct: 224 ALL 226


>gi|142969|gb|AAA22473.1| germination protein (ttg start codon) [Bacillus subtilis]
 gi|1770055|emb|CAA99550.1| transcriptional regulator of spore coat genes [Bacillus subtilis]
          Length = 74

 Score = 42.7 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|301382983|ref|ZP_07231401.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062866|ref|ZP_07254407.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           K40]
 gi|302131657|ref|ZP_07257647.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + L W++ GK   EIA I  IS  TV  +++++  K   +T   A+  A++  
Sbjct: 186 KLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMG 245

Query: 245 IV 246
           +V
Sbjct: 246 MV 247


>gi|296503059|ref|YP_003664759.1| two-component protein kinase [Bacillus thuringiensis BMB171]
 gi|296324111|gb|ADH07039.1| two-component protein kinase [Bacillus thuringiensis BMB171]
          Length = 319

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG 181
           G D  Y   + D   +   + L++  G +I  D   R+WE       +  +F+S     G
Sbjct: 201 GADG-YVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWE----ENKETGLFESRSD--G 253

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ L+ RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A
Sbjct: 254 IEYGLSKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 312


>gi|284050625|ref|ZP_06380835.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
 gi|291567571|dbj|BAI89843.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 208

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  + EGK++ EIA  L +S NT+  ++  IM K A   R      A+R+ +
Sbjct: 148 LSPRELEVLKLMVEGKSNPEIAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|152989200|ref|YP_001349253.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7]
 gi|150964358|gb|ABR86383.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7]
          Length = 239

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A Q+    +++    K   LT RE E L W + GKTS EI+VI   S   VN ++ +I R
Sbjct: 158 ALQSGAGLAFEHPVNKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    +R  A   AV   ++
Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237


>gi|212638135|ref|YP_002314655.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559615|gb|ACJ32670.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +     G T+++IA  L IS  TV N+  +IM+K   K +   I YA++N+I
Sbjct: 150 LTNREREIVRLTFLGYTNNQIANKLKISPKTVENHKTNIMQKLGIKEKHELIQYALKNHI 209


>gi|83854765|ref|ZP_00948295.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83842608|gb|EAP81775.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 248

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+E L WI+ GK++  IA I+G+SR+TV+  +  +  K     R+ A   AVR 
Sbjct: 180 LSPRELELLRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRA---AVRG 234


>gi|239927379|ref|ZP_04684332.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435723|ref|ZP_06575113.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338618|gb|EFE65574.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 222

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG +S EIA +L IS  TV  +  +++ K   + R     YA+R  +
Sbjct: 160 LTPREEEVLKLVAEGHSSKEIAELLFISVKTVQRHRENLLHKLGLRDRLDLTRYAIRAGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|225011599|ref|ZP_03702037.1| two component transcriptional regulator, LuxR family [Flavobacteria
           bacterium MS024-2A]
 gi|225004102|gb|EEG42074.1| two component transcriptional regulator, LuxR family [Flavobacteria
           bacterium MS024-2A]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 174 KSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           K+ D+H  ++    L+ RE+E L ++ EGK + EIA  L I + TVN Y + +M+K
Sbjct: 135 KNVDLHRPRNAYGTLSSREIEVLKYLIEGKRNVEIAATLKIHQKTVNTYKSRLMKK 190


>gi|220925456|ref|YP_002500758.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950063|gb|ACL60455.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 238

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G +  LT REVE L +++ G ++  IA  L I+  TV  ++ SI+RKT  + R+ A  + 
Sbjct: 164 GANETLTEREVEILAYLAAGLSNKLIARRLSIAEATVKIHVKSILRKTGLQNRTQAAIWT 223

Query: 241 VRNNI 245
            R+ I
Sbjct: 224 HRHGI 228


>gi|170723751|ref|YP_001751439.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169761754|gb|ACA75070.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 258

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD-----FE-LTGREVECLTWISEGKTSDEIAVIL 210
           D L++    A  Q    ++ DV  G+      FE L+ R++E    +S+GKT+ +IA  L
Sbjct: 155 DELYQDLEKARGQGVHRRASDVEEGESDLPAAFEKLSPRQLEVARLVSKGKTNYQIACEL 214

Query: 211 GISRNTVNNYIASIMRKTATKTRS 234
           GI+ NTV  Y++ ++R T    R+
Sbjct: 215 GITENTVKLYVSQVLRLTHMHNRT 238


>gi|146301956|ref|YP_001196547.1| response regulator receiver protein [Flavobacterium johnsoniae
           UW101]
 gi|146156374|gb|ABQ07228.1| response regulator receiver protein [Flavobacterium johnsoniae
           UW101]
          Length = 251

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E L  + +GK S EIA +L IS+NTV+ +  +I+ K      + A   AV+
Sbjct: 191 LSSREKEILKMLQKGKQSKEIASLLFISKNTVSRHRQNILEKMKVNNTAEACTLAVK 247


>gi|302524082|ref|ZP_07276424.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302432977|gb|EFL04793.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 178

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +S+GK++ +I   L +S +TV  +   + RK   + R+ A+A+  R  
Sbjct: 116 QLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRG 175

Query: 245 IV 246
           +V
Sbjct: 176 LV 177


>gi|284040245|ref|YP_003390175.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819538|gb|ADB41376.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 223

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE + LT + +G +S EIA   GIS NTV N  ASI+RK   K  +  I  A+
Sbjct: 164 ITSREGQVLTCLIDGMSSPEIAEKFGISPNTVANQRASIIRKAGVKNTADLIRLAL 219


>gi|228993223|ref|ZP_04153144.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442]
 gi|229006827|ref|ZP_04164460.1| Spore germination protein gerE [Bacillus mycoides Rock1-4]
 gi|229087050|ref|ZP_04219202.1| Spore germination protein gerE [Bacillus cereus Rock3-44]
 gi|228696243|gb|EEL49076.1| Spore germination protein gerE [Bacillus cereus Rock3-44]
 gi|228754449|gb|EEM03861.1| Spore germination protein gerE [Bacillus mycoides Rock1-4]
 gi|228766549|gb|EEM15191.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442]
          Length = 74

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|226363605|ref|YP_002781387.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242094|dbj|BAH52442.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 897

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +   +T+++IA  L +S NTV  ++  I RK    +R  AIA A  N +
Sbjct: 837 LTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYRKLGVTSRRDAIAAAQHNGL 896

Query: 246 V 246
           +
Sbjct: 897 L 897


>gi|212693876|ref|ZP_03302004.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855]
 gi|212663408|gb|EEB23982.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855]
          Length = 214

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ SG   YAV 
Sbjct: 146 EHELSIREIEVLILITKGLINKEIADKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVM 205

Query: 243 NNIV 246
           N  +
Sbjct: 206 NGYI 209


>gi|209518837|ref|ZP_03267650.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
 gi|209500722|gb|EEA00765.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
          Length = 269

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  
Sbjct: 205 KLTPRERECLKWTARGKSTWEISHILSCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLG 264

Query: 245 IV 246
           ++
Sbjct: 265 LI 266


>gi|152982513|ref|YP_001353581.1| LuxR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151282590|gb|ABR91000.1| transcriptional regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 313

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L+W+++GKT+ +I  IL +S  TV+ ++  I  K   +TR
Sbjct: 244 LTPRETEVLSWLAKGKTNRDIGEILKMSPRTVSKHLEHIFEKLGVETR 291


>gi|144900171|emb|CAM77035.1| CheB methylesterase:MCP methyltransferase, CheR-type
            [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1435

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            LT R+ + +  +  G  S  IA  LGIS+ TV N+ A+IMRKT +K+
Sbjct: 1375 LTPRQHQIMDMVLAGHPSKNIAADLGISQRTVENHRAAIMRKTGSKS 1421


>gi|170721339|ref|YP_001749027.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759342|gb|ACA72658.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE + L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A
Sbjct: 428 DLTRRERDVLALICEGLADKEIATRLNLALNTVRNHVATVYSKLDVHSRSEAIVWA 483


>gi|16760019|ref|NP_455636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142210|ref|NP_805552.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213162401|ref|ZP_03348111.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213427737|ref|ZP_03360487.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581810|ref|ZP_03363636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213618652|ref|ZP_03372478.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213646854|ref|ZP_03376907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213864885|ref|ZP_03387004.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828614|ref|ZP_06546439.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|291080868|ref|ZP_06537029.2| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|25298760|pir||AG0635 probable regulatory protein STY1179 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502313|emb|CAD08266.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137840|gb|AAO69401.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 208

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            NTV  ++ ++ +K A K R+ A++
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVS 208


>gi|146277748|ref|YP_001167907.1| autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555989|gb|ABP70602.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 233

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L W++ GK+  +I  ILGIS  TV  ++ S   K  T +   A+  A+   +
Sbjct: 170 LSTREIEVLQWVAAGKSQMDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLGL 229

Query: 246 V 246
           V
Sbjct: 230 V 230


>gi|318040623|ref|ZP_07972579.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CB0101]
          Length = 79

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 37/57 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +L+ RE+E +  +++G T+ EI   L IS+ TV+N+++++  KT  K R   + +A+
Sbjct: 2   DLSERELEIIDLVAQGLTNQEIGERLMISKRTVDNHVSNVFTKTGAKNRVALLNWAM 58


>gi|312198483|ref|YP_004018544.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229819|gb|ADP82674.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 1022

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 181  GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            G    LT RE+E L  ++ G ++ +IA  L ISR T + ++++I+ K    TR  A A A
Sbjct: 949  GPPLGLTARELEVLRLVAAGGSNPQIASALFISRKTASTHVSNILGKLGVATRGEAAAVA 1008

Query: 241  VR 242
             R
Sbjct: 1009 HR 1010


>gi|222110965|ref|YP_002553229.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|221730409|gb|ACM33229.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 262

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+ +A
Sbjct: 202 LSQREKEVLRMVASGYTSAEIGNRLFISSLTVNTHIKNIYRKLQVRTRAQAVRFA 256


>gi|159029157|emb|CAO87517.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 93

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  ++ G T+ EI+  L IS+ TV+N+I++I+ KT T  R   + +A+ 
Sbjct: 12  LSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWALH 68


>gi|119485648|ref|ZP_01619923.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119456973|gb|EAW38100.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 226

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ GK++ EIA IL I+  TV  ++ +I++K   + R+ A   A++  +
Sbjct: 160 LTKREQEILALIASGKSNQEIADILYIAPGTVRVHVHTILKKLNARDRTQAALVAIQKKL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|52081342|ref|YP_080133.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52786720|ref|YP_092549.1| GerE [Bacillus licheniformis ATCC 14580]
 gi|157693255|ref|YP_001487717.1| spore germination protein E [Bacillus pumilus SAFR-032]
 gi|194017341|ref|ZP_03055953.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|221310782|ref|ZP_03592629.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315107|ref|ZP_03596912.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320025|ref|ZP_03601319.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324308|ref|ZP_03605602.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767655|ref|NP_390719.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
 gi|296331611|ref|ZP_06874080.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675430|ref|YP_003867102.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|311069333|ref|YP_003974256.1| transcriptional regulator [Bacillus atrophaeus 1942]
 gi|319647250|ref|ZP_08001472.1| spore germination protein gerE [Bacillus sp. BT1B_CT2]
 gi|321312374|ref|YP_004204661.1| transcriptional regulator [Bacillus subtilis BSn5]
 gi|251757272|sp|P11470|GERE_BACSU RecName: Full=Spore germination protein gerE
 gi|13786948|pdb|1FSE|A Chain A, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786949|pdb|1FSE|B Chain B, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786950|pdb|1FSE|C Chain C, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786951|pdb|1FSE|D Chain D, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786952|pdb|1FSE|E Chain E, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786953|pdb|1FSE|F Chain F, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|2924355|emb|CAA11701.1| GerE [Bacillus subtilis]
 gi|52004553|gb|AAU24495.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52349222|gb|AAU41856.1| GerE [Bacillus licheniformis ATCC 14580]
 gi|157682013|gb|ABV63157.1| spore germination protein E [Bacillus pumilus SAFR-032]
 gi|194011209|gb|EDW20779.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|225185283|emb|CAB14801.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
 gi|291485272|dbj|BAI86347.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195]
 gi|296151206|gb|EFG92086.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413674|gb|ADM38793.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|310869850|gb|ADP33325.1| transcriptional regulator [Bacillus atrophaeus 1942]
 gi|317390597|gb|EFV71402.1| spore germination protein gerE [Bacillus sp. BT1B_CT2]
 gi|320018648|gb|ADV93634.1| transcriptional regulator [Bacillus subtilis BSn5]
          Length = 74

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|152976905|ref|YP_001376422.1| response regulator receiver protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025657|gb|ABS23427.1| response regulator receiver protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 74

 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|220905737|ref|YP_002481048.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219862348|gb|ACL42687.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425]
          Length = 100

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ +  I+ G ++ +IA  L IS+ TV+N++++I+ KT T  R   + +AV+
Sbjct: 12  LSDRELQVIELIAAGLSNQQIAEKLEISKRTVDNHVSNILEKTKTGNRVALVRWAVQ 68


>gi|223939339|ref|ZP_03631218.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891943|gb|EEF58425.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 220

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L+ ++ GK++ EI V L IS  TV +++ SI  K    +R+ AIA A R  +
Sbjct: 157 LTSRELAVLSLLALGKSNKEIGVKLYISETTVKSHLRSIFAKLNVISRTEAIATASRRGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|295401191|ref|ZP_06811164.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109465|ref|YP_003987781.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294976784|gb|EFG52389.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214566|gb|ADP73170.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 226

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N
Sbjct: 163 LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAVIVAIKN 220


>gi|223938390|ref|ZP_03630284.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223892959|gb|EEF59426.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 234

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   +LT RE E L+ I+EG+++ E+A  +G+   TV  +   +M K      +G   YA
Sbjct: 165 GNSKKLTNRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRERVMNKLDIHNVAGLTKYA 224

Query: 241 VRNNIV 246
           + + I+
Sbjct: 225 IAHGII 230


>gi|86147858|ref|ZP_01066164.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|85834385|gb|EAQ52537.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
          Length = 215

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+A +
Sbjct: 152 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 211

Query: 243 N 243
           N
Sbjct: 212 N 212


>gi|330940036|gb|EGH43227.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 240

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|328957201|ref|YP_004374587.1| two-component response regulator [YvqE] responding to cell wall
           stress [Carnobacterium sp. 17-4]
 gi|328673525|gb|AEB29571.1| two-component response regulator [YvqE] responding to cell wall
           stress [Carnobacterium sp. 17-4]
          Length = 210

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++G ++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++
Sbjct: 148 DLTNREQEILMLIAQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHH 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|225181065|ref|ZP_03734512.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168262|gb|EEG77066.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 207

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           F+LT RE E L  + EG ++DEIA  L ++  TV NYI++++ K   + R+
Sbjct: 147 FQLTKREFEVLKLVGEGLSNDEIAQKLFLTPGTVRNYISNLLVKLNLRDRT 197


>gi|160947148|ref|ZP_02094315.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270]
 gi|158446282|gb|EDP23277.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270]
          Length = 199

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 182 KDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           KDFEL T +E+E L  I++G ++ EI+  L +S  TV NYI+ I+ K   + R+    Y
Sbjct: 137 KDFELLTQKEIEILEQIAKGLSNKEISEKLFLSEGTVRNYISGILEKLELRDRTQLAIY 195


>gi|254421507|ref|ZP_05035225.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
 gi|196188996|gb|EDX83960.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
          Length = 101

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 41/63 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +L+ RE+E +  ++ G T+ EI+  L IS+ TV+N++++I+ KTA   R   + +A+++
Sbjct: 24  HDLSKRELEIVELVAAGLTNQEISQRLEISKRTVDNHVSNILSKTAAGNRVALVRWALQS 83

Query: 244 NIV 246
             V
Sbjct: 84  GKV 86


>gi|113866807|ref|YP_725296.1| response regulator [Ralstonia eutropha H16]
 gi|113525583|emb|CAJ91928.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 216

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++    ++EG   +E+A  L +S  TV+ + A+I+ K    + +G + YA+R+ +
Sbjct: 149 LTARELQVFQMLAEGLGINEVAAALSLSAKTVSTHKANILGKMDIASTAGLVHYAIRHGL 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|83594559|ref|YP_428311.1| two component LuxR family transcriptional regulator [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577473|gb|ABC24024.1| two component transcriptional regulator, LuxR family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 224

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT R+ E L  + +GK++ EIA +L +S  TV  ++ +I++      R+GA+  A R
Sbjct: 163 LTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQR 219


>gi|218708362|ref|YP_002415983.1| transcriptional regulator [Vibrio splendidus LGP32]
 gi|218321381|emb|CAV17331.1| transcriptional regulator [Vibrio splendidus LGP32]
          Length = 215

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+A +
Sbjct: 152 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 211

Query: 243 N 243
           N
Sbjct: 212 N 212


>gi|192290718|ref|YP_001991323.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192284467|gb|ACF00848.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 240

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L WI+EGKT  EIA IL +S + V+     I  K     R  A+  A+R  +
Sbjct: 179 LTIREADVLHWIAEGKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGV 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|146275775|ref|YP_001165935.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
 gi|145322466|gb|ABP64409.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
          Length = 255

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ REVECL W + GKT  EI++I+G SR TV  +I +   K     RS  +  A +
Sbjct: 191 LSKREVECLRWAAIGKTDLEISMIMGRSRATVRFHIHNASMKLNAVNRSQTVFKAAQ 247


>gi|148553727|ref|YP_001261309.1| two component LuxR family transcriptional regulator [Sphingomonas
           wittichii RW1]
 gi|148498917|gb|ABQ67171.1| two component transcriptional regulator, LuxR family [Sphingomonas
           wittichii RW1]
          Length = 229

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G T +EIA  L +SR+TV  +I +I RK   +TR  A+  A++  +
Sbjct: 167 LTPRELDILWGIAKGLTYNEIADQLDLSRHTVPGHIKAIYRKLQVQTRGEAVYEAIQCGL 226

Query: 246 V 246
           +
Sbjct: 227 I 227


>gi|159900171|ref|YP_001546418.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893210|gb|ABX06290.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 221

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I+ G ++ EIA  L IS  TV  ++++I+ K     R+ A  YA+R  +
Sbjct: 152 LTEREMDVLRLIARGHSNREIADSLIISEKTVKTHVSNILSKLHLADRTQAAIYALRQRL 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|124268980|ref|YP_001022984.1| LuxR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124261755|gb|ABM96749.1| putative LuxR-family transcriptional regulator [Methylibium
           petroleiphilum PM1]
          Length = 237

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE++ L W  +GKT+ E+  I+GIS  T   +I + M K A   +  A+  A+R
Sbjct: 175 KLTPRELDSLRWTMDGKTAWEVGSIMGISERTAVLHINNAMHKLACTNKHQAVLKALR 232


>gi|325277057|ref|ZP_08142715.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097807|gb|EGB95995.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 491

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE + L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A
Sbjct: 428 DLTRRERDVLALICEGLADKEIAARLNLALNTVRNHVATVYSKLDVHSRSEAIVWA 483


>gi|317128969|ref|YP_004095251.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315473917|gb|ADU30520.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 199

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L  +++GK++ EIA IL ++  TV NYI++I+ K     R  AI
Sbjct: 138 LTEREREVLVHMADGKSTKEIANILHLTNGTVRNYISTILDKLEVGNRIEAI 189


>gi|124024371|ref|YP_001018678.1| LuxR transcriptional regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964657|gb|ABM79413.1| Bacterial regulatory protein, LuxR family protein [Prochlorococcus
           marinus str. MIT 9303]
          Length = 92

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 38/58 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+
Sbjct: 12  ISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 69


>gi|238794186|ref|ZP_04637801.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
 gi|238726476|gb|EEQ18015.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
          Length = 214

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E L W S GKT  EIA+I GI+  TV  +I ++++K        AI   V 
Sbjct: 149 LSPRENEVLHWASMGKTYQEIALITGITSRTVKYHIGNVVKKLGVINAKQAIRLGVE 205


>gi|186680836|ref|YP_001864032.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463288|gb|ACC79089.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 224

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ GK++ EIA IL I+  TV  ++ +I++K   + R+ A   A++  +
Sbjct: 157 LTKREQEILALVAAGKSNQEIAEILYIAPGTVRVHVHAILQKLEVRDRTQAAVLAIQKGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|33864279|ref|NP_895839.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9313]
 gi|33641059|emb|CAE22188.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9313]
          Length = 92

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 38/58 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+
Sbjct: 12  ISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 69


>gi|116621307|ref|YP_823463.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224469|gb|ABJ83178.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 207

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REV+ L  I  G  + +IA  L I+ +TV N++ +I+ K   + R+ A   A++  
Sbjct: 144 DLSAREVQVLGLIVRGLANKQIAFTLSIAEHTVKNHVKNILSKLGVQDRTQAATAAIQRG 203

Query: 245 IV 246
           I+
Sbjct: 204 II 205


>gi|295134050|ref|YP_003584726.1| two-component response regulator [Zunongwangia profunda SM-A87]
 gi|294982065|gb|ADF52530.1| two-component response regulator [Zunongwangia profunda SM-A87]
          Length = 214

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  I++  T+ EIA +L +S++T+ +Y  +++ K   +  +G   YA+ 
Sbjct: 151 EIRLTQREKEVLQLIAKEHTTQEIADMLFLSKHTIESYRKNLINKLEVRNLAGLTRYAIE 210

Query: 243 NNIV 246
           +N+V
Sbjct: 211 HNMV 214


>gi|294010919|ref|YP_003544379.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292674249|dbj|BAI95767.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 296

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE E L WIS GK++ + + IL IS  TVN ++  I  K   + R
Sbjct: 229 FGLTRREAEVLLWISRGKSNRDASEILNISARTVNKHLEQIFVKMGVENR 278


>gi|284042088|ref|YP_003392428.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946309|gb|ADB49053.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 196

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 157 DRLWEIG--LLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGIS 213
           DR W +   L A   A +  +  +H       L+ RE + LT +SEG T+ +I   L +S
Sbjct: 103 DRTWPVARLLTALRAAGLDDTAPIHRPPSPTRLSERERQVLTLVSEGSTNAQIGRSLCLS 162

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
            +T+  + +S+ RK   + R+ A+  A
Sbjct: 163 PHTIKQHTSSVYRKLHARNRAEAVTRA 189


>gi|239983155|ref|ZP_04705679.1| LuxR family transcriptional regulator [Streptomyces albus J1074]
 gi|291454986|ref|ZP_06594376.1| LuxR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291357935|gb|EFE84837.1| LuxR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 275

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  ++ G T+  +A  LG+   TV  Y+ S MRK    TR  A+  A R  +
Sbjct: 214 LTPREVDVLVCVAGGATNAAVAGRLGVRPETVKGYLRSAMRKLGAHTRLEAVVAARRQGL 273

Query: 246 V 246
           +
Sbjct: 274 L 274


>gi|256394338|ref|YP_003115902.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256360564|gb|ACU74061.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 225

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G+ + EIA  L ++  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 157 LTAREREVLVLIAQGRANREIARALVLAEKTVKTHVSNILMKLGVADRTQAALWAVRHGI 216


>gi|108798029|ref|YP_638226.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119867124|ref|YP_937076.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|126433690|ref|YP_001069381.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|108768448|gb|ABG07170.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119693213|gb|ABL90286.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
 gi|126233490|gb|ABN96890.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 219

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+++  G ++  IA  L I   TV  ++ SI RK     R+GA+A A+R  I
Sbjct: 158 LTQRESEILSFVVTGLSNRGIANKLVIGEETVKTHLRSIYRKLGVGDRAGAVATALREGI 217


>gi|89893631|ref|YP_517118.1| hypothetical protein DSY0885 [Desulfitobacterium hafniense Y51]
 gi|89333079|dbj|BAE82674.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +G++ LR      GL              H G +  LT RE + L  ++ G TS EI   
Sbjct: 131 QGQVFLRPE----GLAVLTVQQKLNKKQKHCGGEPVLTERETQVLGMVARGYTSKEIGEK 186

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L I+ +TV+ Y   +++K    TR+  + YA+ ++I
Sbjct: 187 LYIAPSTVDTYRERLIKKLEFTTRAQLVDYAILHDI 222


>gi|307328329|ref|ZP_07607506.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886033|gb|EFN17042.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 211

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  +++G ++ EIA  L +S  TV  ++  +  KT ++ R  AIAYA R
Sbjct: 151 LTAREAEVLICMAKGLSNREIARSLFVSEATVKTHVNRVFAKTGSRDRGQAIAYAHR 207


>gi|302559531|ref|ZP_07311873.1| two-component system response regulator TcsR2 [Streptomyces
           griseoflavus Tu4000]
 gi|302477149|gb|EFL40242.1| two-component system response regulator TcsR2 [Streptomyces
           griseoflavus Tu4000]
          Length = 202

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT REVE L  ++EG  + +IA    +S  TV NY+ +I+ K   + R  A+  A  
Sbjct: 138 DSPLTEREVEVLARVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARD 197

Query: 243 NN 244
           N 
Sbjct: 198 NG 199


>gi|253564051|ref|ZP_04841508.1| LuxR family transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|251947827|gb|EES88109.1| LuxR family transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|301161648|emb|CBW21188.1| putative LuxR family transcriptional regulator [Bacteroides
           fragilis 638R]
          Length = 199

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I++G  + EIA  L I   TV  +  +I  K   K+ SG   YAV N 
Sbjct: 133 ELSAREIEVLVLITKGLINKEIADKLNIGLTTVITHRKNITEKLGIKSVSGLTIYAVMNG 192

Query: 245 IV 246
            V
Sbjct: 193 YV 194


>gi|118468464|ref|YP_885258.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169751|gb|ABK70647.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 215

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  I+EG ++ EIA  L IS  TV+ +  +I+ K   + R     YA+R
Sbjct: 150 DSILTPREEEVLKLIAEGYSTREIAATLTISAKTVDRHRTNILAKLGLRDRLALTRYAIR 209

Query: 243 NNIV 246
             ++
Sbjct: 210 AGLI 213


>gi|35186966|gb|AAQ84141.1| PlmR3 [Streptomyces sp. HK803]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE++ L  +SEGK   EIA  L  S  TV   +  +M++   + RS A++YA+R  ++
Sbjct: 156 RELDVLRLVSEGKELAEIAAKLCYSERTVKYILHGLMKRLQLRNRSHAVSYAIRAGLI 213


>gi|311896158|dbj|BAJ28566.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 202

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LTGRE+E L   +EG    EIA  L +S  TV NY+ +++ K   + R  AI  A
Sbjct: 138 DCPLTGREIEVLRLAAEGAEVAEIASRLFLSSGTVRNYLTTVVSKLNARNRVDAIRVA 195


>gi|295700193|ref|YP_003608086.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439406|gb|ADG18575.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
          Length = 234

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  
Sbjct: 170 KLTPRERECLKWTARGKSTWEISHILSCSEAVVNFHMKNIRAKFGVNSRRAAAVIAAQLG 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|39996395|ref|NP_952346.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983275|gb|AAR34669.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
          Length = 216

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EGK + E+A  L +S  TV +    IMRK  T + +    +A+R  +
Sbjct: 153 LTPREREVLQLIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSIADLTKFAIREGL 212


>gi|60680121|ref|YP_210265.1| LuxR family transcriptional regulator [Bacteroides fragilis NCTC
           9343]
 gi|265765259|ref|ZP_06093534.1| LuxR family transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|60491555|emb|CAH06307.1| putative LuxR family transcriptional regulator [Bacteroides
           fragilis NCTC 9343]
 gi|263254643|gb|EEZ26077.1| LuxR family transcriptional regulator [Bacteroides sp. 2_1_16]
          Length = 199

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I++G  + EIA  L I   TV  +  +I  K   K+ SG   YAV N 
Sbjct: 133 ELSAREIEVLVLITKGLINKEIADKLNIGLTTVITHRKNITEKLGIKSVSGLTIYAVMNG 192

Query: 245 IV 246
            V
Sbjct: 193 YV 194


>gi|56751843|ref|YP_172544.1| transcriptional regulator [Synechococcus elongatus PCC 6301]
 gi|81301073|ref|YP_401281.1| LuxR family transcriptional regulator [Synechococcus elongatus PCC
           7942]
 gi|56686802|dbj|BAD80024.1| transcriptional regulator [Synechococcus elongatus PCC 6301]
 gi|81169954|gb|ABB58294.1| transcriptional regulator, LuxR family [Synechococcus elongatus PCC
           7942]
          Length = 91

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   + +A++
Sbjct: 13  LSERELQIVDLVAAGLTNQEIATRLDISKRTVDNHISNILTKTGTDNRVALVRWALQ 69


>gi|311067076|ref|YP_003971999.1| two-component hybrid sensor and regulator [Bacillus atrophaeus
           1942]
 gi|310867593|gb|ADP31068.1| two-component hybrid sensor and regulator [Bacillus atrophaeus
           1942]
          Length = 596

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK++ LT RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A
Sbjct: 530 GKEYGLTKRELEVLNLLSQGIRYKTIASELYLSNGTVRNYASTLYDKLGVKNREEAVQKA 589


>gi|91976651|ref|YP_569310.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91683107|gb|ABE39409.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
          Length = 240

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L WI+EGKT  EIA IL +S + V+     I  K     R  A+  A+R  +
Sbjct: 179 LTIREADVLHWIAEGKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGV 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|72383356|ref|YP_292711.1| LuxR transcriptional regulator [Prochlorococcus marinus str.
           NATL2A]
 gi|72003206|gb|AAZ59008.1| regulatory protein, LuxR [Prochlorococcus marinus str. NATL2A]
          Length = 91

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 38/56 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+
Sbjct: 14  LSAREMEIIGLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 69


>gi|103488004|ref|YP_617565.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98978081|gb|ABF54232.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis
           RB2256]
          Length = 276

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ EC+ W + GKT+ EIA ILGIS  TV  ++     + +   RS  I  A+ + +
Sbjct: 204 LTERQRECVLWSARGKTAGEIADILGISEETVVRHLKMARERYSVHCRSMLILCALFDGL 263

Query: 246 V 246
           +
Sbjct: 264 I 264


>gi|324998048|ref|ZP_08119160.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 198

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +S+GK++ +I   L +S +TV  +   + RK   + R+ A+A+  R 
Sbjct: 135 VQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRR 194

Query: 244 NIV 246
            +V
Sbjct: 195 GLV 197


>gi|320537182|ref|ZP_08037151.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
 gi|320145970|gb|EFW37617.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
          Length = 217

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ++ELT +E+E +  ++EG ++ EIA    +S  T+ N I+ I  KT    R+    +A +
Sbjct: 154 EYELTQKEIEIIKLVAEGFSNKEIAHKQQLSEGTIKNNISVIFSKTFVADRTQLALFAFK 213

Query: 243 NNIV 246
           N IV
Sbjct: 214 NGIV 217


>gi|310643909|ref|YP_003948667.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309248859|gb|ADO58426.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 216

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A+   N F+          ELT RE+E L  +++GK++ +IA  L I   TV  ++ ++
Sbjct: 134 VASKMMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVTNL 193

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           + K   + R+ A  YA +N +
Sbjct: 194 LAKLGVEDRTQAAIYAYKNGL 214


>gi|300215394|gb|ADJ79807.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 201

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  +    ++ E+A    +S  T+ NYI+SI+ KT T++R  A+  A +
Sbjct: 138 DNPLTNREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEK 197

Query: 243 NN 244
            N
Sbjct: 198 RN 199


>gi|50119067|ref|YP_048234.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609593|emb|CAG73026.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 242

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K        AI   V 
Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234


>gi|296271341|ref|YP_003653973.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296094128|gb|ADG90080.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 228

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E +  I+EG +S EIA  L IS  TV+ + A+++ K   + R     YA+R
Sbjct: 163 DSVLTPREEEIVKLIAEGYSSKEIAETLQISVKTVDRHRANVLAKLGMRDRLELTRYAIR 222

Query: 243 NNIV 246
             +V
Sbjct: 223 AGLV 226


>gi|293393478|ref|ZP_06637789.1| transcriptional activator protein CarR [Serratia odorifera DSM
           4582]
 gi|291424079|gb|EFE97297.1| transcriptional activator protein CarR [Serratia odorifera DSM
           4582]
          Length = 245

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIA+ILGI   TV  +I ++++K        AI   + 
Sbjct: 180 FSHRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIE 236


>gi|256380525|ref|YP_003104185.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924828|gb|ACU40339.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 198

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +S+GK++ +I   L +S +TV  +   + RK   + R+ A+A+  R  
Sbjct: 136 QLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRG 195

Query: 245 IV 246
           +V
Sbjct: 196 LV 197


>gi|89096396|ref|ZP_01169289.1| YocG [Bacillus sp. NRRL B-14911]
 gi|89089250|gb|EAR68358.1| YocG [Bacillus sp. NRRL B-14911]
          Length = 198

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  + ++  LT RE   L  +++GK ++EIA  L I   TV NY+++I+ K   + R  A
Sbjct: 128 DDMYAEENPLTEREKAVLELVADGKNTNEIAAELSIKSGTVRNYVSAILEKLEVQNRIEA 187

Query: 237 I 237
           I
Sbjct: 188 I 188


>gi|251782925|ref|YP_002997228.1| two-component system response regulator [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391555|dbj|BAH82014.1| two-component system response regulator [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 198

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT +E+  L  I++GKTS EI+ +L +S  T+ NY +SI  K     R  AI  A +N
Sbjct: 138 LTQQEMTILRLINQGKTSKEISQLLFLSSGTIRNYSSSIFDKLGVSNRIEAIRLANKN 195


>gi|224536867|ref|ZP_03677406.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521533|gb|EEF90638.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 215

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ISEG  S+EIA  L IS NTV  +   IM K   K  S  +  A+++ +
Sbjct: 153 LSKREQEVLKCISEGLKSNEIATKLYISVNTVEFHRKQIMLKLEAKNASDMLIKAIKSGV 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|123441372|ref|YP_001005359.1| LuxR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088333|emb|CAL11124.1| LuxR-family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 240

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + RE E + W S GK   EIA+ILGI    V +++  ++RK        AI+ AV
Sbjct: 175 FSTRENEIIYWASVGKAYQEIALILGIKPTAVKHHMGKVVRKLGVTNAKHAISLAV 230


>gi|109897088|ref|YP_660343.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109699369|gb|ABG39289.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica
           T6c]
          Length = 881

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           +RD+  ++G+L    +     Y         LT +E + L ++S G ++ EIA +L  S+
Sbjct: 785 VRDKAKQLGVLEDLPSARRGPYKQTRQHPAGLTAKEQQVLGYLSAGSSNQEIADLLSRSQ 844

Query: 215 NTVNNYIASIMRKTATKTRSGAI 237
            TV N+++SI+ K     R  AI
Sbjct: 845 RTVENHVSSILSKLNVANRMEAI 867


>gi|289679671|ref|ZP_06500561.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
          Length = 160

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 99  LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 158

Query: 246 V 246
           +
Sbjct: 159 I 159


>gi|257057262|ref|YP_003135094.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587134|gb|ACU98267.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 223

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G ++ EIA  L IS  TV  +++SI+RK    +R+ A   AVR  +
Sbjct: 159 LTERERDVLILIANGYSNKEIADELVISERTVRTHVSSILRKLRLSSRTQAALVAVREGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|219849447|ref|YP_002463880.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543706|gb|ACL25444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Chloroflexus aggregans DSM 9485]
          Length = 917

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++EG+++ EIA  L I+ +TV ++I +I  K    +R+ A+A   R  +
Sbjct: 856 LSQREIEVLRLMAEGRSNHEIATSLVIAVSTVKSHINNIFNKLGVASRTQAVARGRRLGL 915

Query: 246 V 246
           +
Sbjct: 916 I 916


>gi|108803724|ref|YP_643661.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108764967|gb|ABG03849.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 253

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  L+ RE+E L  I+ G+T+ EI   L +S  TV ++  SI RK   + R+ AIA A
Sbjct: 189 DEPLSERELEVLKHIASGRTNSEIGRHLYVSVGTVKSHTGSIYRKLGVRNRAEAIARA 246


>gi|62249408|gb|AAX77679.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
 gi|84620011|gb|ABC59304.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum]
          Length = 242

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K        AI   V 
Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234


>gi|253690507|ref|YP_003019697.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|34398218|gb|AAQ67211.1| transcriptional regulator [Enterobacteriaceae bacterium A2JM]
 gi|251757085|gb|ACT15161.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 242

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K        AI   V 
Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234


>gi|53711893|ref|YP_097885.1| LuxR family transcriptional regulator [Bacteroides fragilis YCH46]
 gi|52214758|dbj|BAD47351.1| LuxR family transcriptional regulator [Bacteroides fragilis YCH46]
          Length = 198

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I++G  + EIA  L I   TV  +  +I  K   K+ SG   YAV N 
Sbjct: 132 ELSAREIEVLVLITKGLINKEIADKLNIGLTTVITHRKNITEKLGIKSVSGLTIYAVMNG 191

Query: 245 IV 246
            V
Sbjct: 192 YV 193


>gi|315642413|ref|ZP_07896990.1| LuxR family DNA-binding response regulator [Enterococcus italicus
           DSM 15952]
 gi|315482290|gb|EFU72845.1| LuxR family DNA-binding response regulator [Enterococcus italicus
           DSM 15952]
          Length = 202

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+  L  +  G ++ ++A  L +S  T+ NYI+SI+ KT T +R  AI  A +N 
Sbjct: 141 LTKREMSVLAGLQTGASTAKMAEELFLSEGTLRNYISSILSKTGTHSRIEAINIAKKNG 199


>gi|294628631|ref|ZP_06707191.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292831964|gb|EFF90313.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +A
Sbjct: 147 GRGGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 206

Query: 241 VRNNI 245
           VR+ +
Sbjct: 207 VRHGV 211


>gi|291300770|ref|YP_003512048.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569990|gb|ADD42955.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 233

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E +  +++G T+DEIA  + IS  T   +I   M KTA + R+  +  A  + 
Sbjct: 154 DLTNREREAVALVAQGLTNDEIADHMAISPMTAKTHINRAMAKTAARDRAQLVVLAYESG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|228949758|ref|ZP_04111975.1| Response regulator receiver [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809915|gb|EEM56319.1| Response regulator receiver [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 503

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG 181
           G D  Y   + D   +   + L++    +I  D   R+WE       +  +F+S     G
Sbjct: 385 GADG-YVLKSIDSRELAESIRLVYRGSTMITHDLFHRMWE----ENEETGLFESQSD--G 437

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ LT RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A
Sbjct: 438 IEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 496


>gi|154688084|ref|YP_001423245.1| YocG [Bacillus amyloliquefaciens FZB42]
 gi|154353935|gb|ABS76014.1| YocG [Bacillus amyloliquefaciens FZB42]
          Length = 199

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L  +++GK + EIA  L I   TV NY++ I+ K   K R  AI
Sbjct: 138 LTEREKEVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNRIEAI 189


>gi|124022984|ref|YP_001017291.1| hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT
           9303]
 gi|123963270|gb|ABM78026.1| Hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT
           9303]
          Length = 233

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE+E L  I  G ++ EI+  L +S  TV + +++I+ K   + R+ A  +A+R
Sbjct: 169 DCQLTERELEVLNAIVGGLSNKEISESLFVSSETVKSNVSTIISKLGVRVRTQAAVFAIR 228

Query: 243 NNIV 246
           + IV
Sbjct: 229 HRIV 232


>gi|123441494|ref|YP_001005480.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088455|emb|CAL11247.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174
           G+D R   LT   AR  +  M+       +L+D   EI L    LA+   N+F       
Sbjct: 76  GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 135

Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 136 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195

Query: 233 RSGAIAYAVRN 243
           R  A    + N
Sbjct: 196 RVAATIMYLEN 206


>gi|9885632|gb|AAG01455.1|AF282857_3 HrpY [Pantoea stewartii subsp. stewartii]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +  NM  +  +H     +LT RE++ +  ++ G+  + IA  L IS  TV+ + A +M K
Sbjct: 138 FNENMSANEGLHQ----QLTAREMQIMLKLARGEGVNSIAEALAISNKTVSTHKARLMEK 193

Query: 228 TATKTRSGAIAYAVRNNIV 246
              KT +  + YA+ ++++
Sbjct: 194 MMFKTNADIVKYAISHHLI 212


>gi|329922778|ref|ZP_08278313.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941920|gb|EGG38204.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 200

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + + G++  LT RE E L  I++GK + EIA  L I+  TV NYI+ I+ K     R  A
Sbjct: 130 EAYSGEENPLTEREKEVLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEA 189

Query: 237 I 237
           I
Sbjct: 190 I 190


>gi|296331918|ref|ZP_06874383.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673530|ref|YP_003865202.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150996|gb|EFG91880.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411774|gb|ADM36893.1| two-component response regulator (paired with YfiJ) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 220

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +LT RE+E L  +  G  + EIA  L I+  TV N++++I+ K + + R+ A  Y+VR
Sbjct: 156 LDLTEREMEVLAELGYGLNNKEIAEKLFITEGTVKNHVSNIISKLSVRDRTQAAIYSVR 214


>gi|291438340|ref|ZP_06577730.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341235|gb|EFE68191.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
          Length = 202

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT REVE L  ++EG  + +IA    +S  TV NY+ +I+ K   + R  A+  A  
Sbjct: 138 DSPLTEREVEVLARVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARD 197

Query: 243 NN 244
           N 
Sbjct: 198 NG 199


>gi|167839343|ref|ZP_02466027.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 214

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 34/75 (45%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N+    D        L+ RE E    ++ G T  EIA  LGIS  TV  Y A ++ K A 
Sbjct: 136 NLHAPSDADAPPHERLSKREFEVFLHLAAGDTPAEIAQALGISAKTVRIYKAHVLDKLAL 195

Query: 231 KTRSGAIAYAVRNNI 245
              S  + YAV + I
Sbjct: 196 PNESALVRYAVAHRI 210


>gi|84502331|ref|ZP_01000479.1| two-component response regulator [Oceanicola batsensis HTCC2597]
 gi|84389691|gb|EAQ02410.1| two-component response regulator [Oceanicola batsensis HTCC2597]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+D  LT RE E L  I  G  + E+A  LGI+ +TV  Y+    RK    +R+ A  +A
Sbjct: 145 GQDAALTDREREVLGLIGRGLRNAEVAAELGIAVSTVAGYVKDTYRKLGISSRAEAAWHA 204

Query: 241 VR 242
            R
Sbjct: 205 TR 206


>gi|330954455|gb|EGH54715.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 240

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGGALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|315649523|ref|ZP_07902608.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315274996|gb|EFU38371.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 236

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E + L ++ +GKT+ EI  IL I   T++N++ SI RK   K R  A   A
Sbjct: 152 LTPQERKILCYVYQGKTTSEIHRILNIEEKTIDNHVTSINRKLQVKNRREAAQVA 206


>gi|300782698|ref|YP_003762989.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792212|gb|ADJ42587.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 198

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +S+GK++ +I   L +S +TV  +   + RK   + R+ A+A+  R 
Sbjct: 135 VQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRR 194

Query: 244 NIV 246
            +V
Sbjct: 195 GLV 197


>gi|298290539|ref|YP_003692478.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296927050|gb|ADH87859.1| transcriptional regulator, LuxR family [Starkeya novella DSM 506]
          Length = 293

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ELT R++E  +WI+ GK++++IA IL +  +TV  ++ +I  K     R
Sbjct: 203 ELTPRQLEVGSWIARGKSNEDIATILDVGVDTVKAHVKAIHAKVGADGR 251


>gi|167645327|ref|YP_001682990.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347757|gb|ABZ70492.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 257

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE++CL W + GKT  +IA I+GI+  TV  ++ +   K     R+ A+
Sbjct: 184 LTKREIQCLKWAAAGKTDADIAQIIGIAGPTVRFHVQNAALKLRVAGRAQAV 235


>gi|104779907|ref|YP_606405.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95108894|emb|CAK13590.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVRN 243
           +L+ R++E    +S+GKT+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A   R+
Sbjct: 180 KLSPRQLEVAKLVSKGKTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALALTPRS 239

Query: 244 NIV 246
           + V
Sbjct: 240 SPV 242


>gi|332162558|ref|YP_004299135.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666788|gb|ADZ43432.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 202

 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174
           G+D R   LT   AR  +  M+       +L+D   EI L    LA+   N+F       
Sbjct: 69  GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 128

Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 129 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 188

Query: 233 RSGAIAYAVRN 243
           R  A    + N
Sbjct: 189 RVAATIMYLEN 199


>gi|323180293|gb|EFZ65845.1| transcriptional regulator, LuxR family protein [Escherichia coli
           1180]
          Length = 123

 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +  D +LT RE E L  I++GKT+ EIA  L +SR T+  +  +IM+K
Sbjct: 55  YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTIETHRLNIMKK 102


>gi|322434963|ref|YP_004217175.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321162690|gb|ADW68395.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE+E L  +S GK++  +A  L IS +TV N++ SI+ K     R+ A+  A+R  
Sbjct: 150 RELEVLQEVSRGKSNKIVAGDLNISEHTVKNHLKSILSKLDASDRTDAVVIAIRRG 205


>gi|299537605|ref|ZP_07050898.1| two-component response regulator-like protein [Lysinibacillus
           fusiformis ZC1]
 gi|298726974|gb|EFI67556.1| two-component response regulator-like protein [Lysinibacillus
           fusiformis ZC1]
          Length = 215

 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++GK++ EIA  L ++  TV  +I++I  K   + R+ A  YAV++ +
Sbjct: 150 LTPREQDVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209


>gi|261405105|ref|YP_003241346.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261281568|gb|ACX63539.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 200

 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + + G++  LT RE E L  I++GK + EIA  L I+  TV NYI+ I+ K     R  A
Sbjct: 130 EAYSGEENPLTEREKEVLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEA 189

Query: 237 I 237
           I
Sbjct: 190 I 190


>gi|76057938|emb|CAJ30486.1| PlaR protein [Burkholderia plantarii]
          Length = 240

 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+
Sbjct: 176 LTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAV 227


>gi|298292393|ref|YP_003694332.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928904|gb|ADH89713.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 310

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
             LT RE E L W++ GK + +I  ILG+S  TVN ++  I  K   + R
Sbjct: 247 LNLTVREAEVLMWLARGKANRDIGEILGLSPRTVNKHLEQIYAKIGVENR 296


>gi|326792209|ref|YP_004310030.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM
           5427]
 gi|326542973|gb|ADZ84832.1| two component transcriptional regulator, LuxR family [Clostridium
           lentocellum DSM 5427]
          Length = 210

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +GR ++  ++ E+     Y     K  +      ++ T REV+    + +G T+ +IA  
Sbjct: 120 EGRFMMPQKVAEVLAKNIYAPEALKKRE----NPYDFTEREVQIAEMMKDGFTNKQIAKT 175

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGA 236
           L IS  TV NY+++I  KT T+ R  A
Sbjct: 176 LYISEGTVKNYVSNIYAKTQTENRVEA 202


>gi|302525407|ref|ZP_07277749.1| predicted protein [Streptomyces sp. AA4]
 gi|302434302|gb|EFL06118.1| predicted protein [Streptomyces sp. AA4]
          Length = 217

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G    L+ RE + L  ++ G+   ++A IL IS  TV +Y+  I  KT  + R+G + 
Sbjct: 149 HAGPKIVLSEREKQVLRLVAAGERDVDVAEILDISVRTVRSYLDRIRDKTGERRRAGFVR 208

Query: 239 YAVRNNIV 246
            A+R  ++
Sbjct: 209 VAIREGLL 216


>gi|257054540|ref|YP_003132372.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256584412|gb|ACU95545.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 198

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +S+GK++ +I   L +S +TV  +   + RK   + R+ A+A+  R 
Sbjct: 135 VQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRR 194

Query: 244 NIV 246
            +V
Sbjct: 195 GLV 197


>gi|227114479|ref|ZP_03828135.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K        AI   V 
Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234


>gi|222432077|gb|ACM50924.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K        AI   V 
Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234


>gi|172040517|ref|YP_001800231.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171851821|emb|CAQ04797.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 234

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  + EGK++ +IA  L ++  TV ++++ + RK     R+ A+A A +  I
Sbjct: 173 LTPRELEVLALVGEGKSNRDIARHLVLTEATVKSHLSHVFRKLGANNRTSAVAVARQRGI 232

Query: 246 V 246
           +
Sbjct: 233 I 233


>gi|148272305|ref|YP_001221866.1| LuxR family transcriptional regulator [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830235|emb|CAN01168.1| putative transcriptional regulator, LuxR family [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 392

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE E L  ++ G  +  IA  LGIS NTV  ++A+++RK    TR+
Sbjct: 336 LSAREREVLALVAGGSRNRAIATALGISENTVKFHVANLLRKMGASTRA 384


>gi|307329198|ref|ZP_07608364.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306885228|gb|EFN16248.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 190

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   ++G T+ E+A  L +S  TV NY+++ ++KTA + R+ A+  A
Sbjct: 130 LTAREREVLHASADGSTNAELARALHLSPGTVRNYLSTAIQKTAARNRAEAVRIA 184


>gi|300783390|ref|YP_003763681.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792904|gb|ADJ43279.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +L+   G I +RD +  +    A++     S          +T RE + L  ++ G T+ 
Sbjct: 106 ILVKHAGAIAIRDAIRSVVRTGAFRTGTPAS------STAPVTAREYDVLRLVAAGHTNP 159

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EI   L +S NTV  Y+ ++M+K A + R+  IA A
Sbjct: 160 EIGTELNLSINTVKTYLWTVMQKLAARNRAQLIANA 195


>gi|239981448|ref|ZP_04703972.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291453299|ref|ZP_06592689.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356248|gb|EFE83150.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 137

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           D  L+ REV  L+  ++G +  EIA  L +S  TV NYIAS  RK   + R
Sbjct: 85  DMPLSPREVRVLSRAAQGDSVAEIARGLCLSHGTVRNYIASATRKVGARNR 135


>gi|284032594|ref|YP_003382525.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811887|gb|ADB33726.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 212

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G T+ +IA  L +S  TV N++ + +RK     R+  + YA+ N 
Sbjct: 147 QLTERETEVLRLVARGLTAKQIAQRLVLSHRTVENHVQNTLRKLQLHNRAELVRYAIENG 206

Query: 245 I 245
           I
Sbjct: 207 I 207


>gi|158336238|ref|YP_001517412.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158306479|gb|ABW28096.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 220

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  + EG ++ +I   L +S  TV  Y++ +++KT T  R+  + +A+ +
Sbjct: 151 LDLTQREQQVLRLLMEGLSNAQIGEQLHLSSRTVEKYVSKLLQKTETSNRAEIVRFAMEH 210

Query: 244 NIV 246
           N++
Sbjct: 211 NLL 213


>gi|300857740|ref|YP_003782723.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685194|gb|ADK28116.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302330034|gb|ADL20228.1| Response regulator [Corynebacterium pseudotuberculosis 1002]
          Length = 221

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 179 HWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           H  +D    LT RE+E L  I+ GK++ EIA  L IS  TV  ++  ++ KT ++ R  A
Sbjct: 157 HINEDLIEPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHA 216

Query: 237 IAYA 240
           + +A
Sbjct: 217 VLFA 220


>gi|284009118|emb|CBA76121.1| conserved hypothetical protein [Arsenophonus nasoniae]
          Length = 205

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E L W+S G+T  +IA +LGI + T+  ++ ++++K    +   AI  A  
Sbjct: 141 LSSRENEILYWVSIGRTYQDIAKMLGIKQGTIKFHMGNVVKKLGVSSTKHAIKLATE 197


>gi|222432075|gb|ACM50923.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K        AI   V 
Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVE 234


>gi|217976294|ref|YP_002360441.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
 gi|217501670|gb|ACK49079.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
          Length = 244

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 174 KSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           ++Y +H  +D      +T RE+E L W +EGK+  +I++++ IS  TV  ++ S   K  
Sbjct: 167 RAYKLHAKEDEIDLNAITKREIEALEWSAEGKSLADISILMRISVETVKAHLDSARYKLC 226

Query: 230 TKTRSGAIAYAVRNNIV 246
              R  A+  A+R  ++
Sbjct: 227 ALNRVHAVTKAIRAGLI 243


>gi|297199299|ref|ZP_06916696.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717164|gb|EDY61198.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 210

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTGRE + L   ++G T  +IA  L +S +TV NY++S + KT T+ R  A+  A
Sbjct: 150 LTGRECDVLRASTDGATVADIADRLHLSESTVRNYLSSAIGKTGTRNRMEAVRAA 204


>gi|324999047|ref|ZP_08120159.1| transcriptional regulatory protein DegU [Pseudonocardia sp. P1]
          Length = 220

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    LT RE E L  +  G ++  +A  L I   TV +++ S++RK     R+ A+A A
Sbjct: 154 GARLGLTHRESEVLALLVAGHSNRSVAAELVIGEETVKSHVRSVLRKLDVPDRTAAVAAA 213

Query: 241 VRNNI 245
           +R  +
Sbjct: 214 LREGV 218


>gi|311900106|dbj|BAJ32514.1| putative LuxR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 244

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D+ +  REV+ L  +++G  + EIAV L  S  T+ N I ++  +   + R+ A+AYA+R
Sbjct: 181 DYGMLPREVDVLRLVADGMDTGEIAVKLLYSERTIKNIIHTVTTRFQLRNRAHAVAYALR 240

Query: 243 NNIV 246
              +
Sbjct: 241 EGYI 244


>gi|116329279|ref|YP_798999.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330114|ref|YP_799832.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116122023|gb|ABJ80066.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116123803|gb|ABJ75074.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 221

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++EG +++ I  ILGIS  TV  + A+IM+K      +  + YA+R  +
Sbjct: 159 LSDREREILKLVAEGNSNESIGKILGISPATVKVHRANIMKKLNLHKVADLVMYAIRAGL 218

Query: 246 V 246
           +
Sbjct: 219 I 219


>gi|320109005|ref|YP_004184595.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319927526|gb|ADV84601.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 180 WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           WG + + LT RE + L    EG+T+ E+A  LG+S  TV NY++  M K     R
Sbjct: 136 WGSEVDPLTERERQILLRAGEGRTTAEVARELGLSEGTVRNYLSEAMSKLGAVNR 190


>gi|265751338|ref|ZP_06087401.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
 gi|263238234|gb|EEZ23684.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
          Length = 197

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ SG   YAV 
Sbjct: 129 EHELSIREIEVLILITKGLINKEIADKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVM 188

Query: 243 NNIV 246
           N  +
Sbjct: 189 NGYI 192


>gi|302873825|ref|YP_003842458.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307689930|ref|ZP_07632376.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302576682|gb|ADL50694.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 220

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+  L  ++ G TS EIAV +GI+  TV  ++ +I  K   ++R  A+A A+   I
Sbjct: 156 ITERELFVLQAVARGCTSKEIAVDMGIAERTVKAHLTNIYSKLKVESRPQAVAVAIEQGI 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|257057857|ref|YP_003135689.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587729|gb|ACU98862.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELTGRE++ +   + G T+ EI   L +S +TV  ++AS+ +K   + R    A+A RN 
Sbjct: 153 ELTGRELDVVRAAARGLTNSEIGAELYLSLSTVKTHLASVQQKLGVRNRVEIAAWAWRNG 212

Query: 245 IV 246
           I+
Sbjct: 213 IM 214


>gi|237708501|ref|ZP_04538982.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|237723973|ref|ZP_04554454.1| transcriptional regulator [Bacteroides sp. D4]
 gi|229437637|gb|EEO47714.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|229457430|gb|EEO63151.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ SG   YAV 
Sbjct: 138 EHELSIREIEVLILITKGLINKEIADKLHISLTTVISHRKNITEKLGIKSVSGLTVYAVM 197

Query: 243 NNIV 246
           N  +
Sbjct: 198 NGYI 201


>gi|31790496|emb|CAD56673.1| putative regulatory protein [Citrobacter freundii]
          Length = 216

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 124 VLRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNIEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213


>gi|85706357|ref|ZP_01037451.1| nitrate/nitrite regulatory protein [Roseovarius sp. 217]
 gi|85669130|gb|EAQ23997.1| nitrate/nitrite regulatory protein [Roseovarius sp. 217]
          Length = 216

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  + +G T+ +I+  LG+S NTV  Y+ +I +K    +R GAIA
Sbjct: 157 LTRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGGAIA 209


>gi|298486382|ref|ZP_07004444.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159110|gb|EFI00169.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 177 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 236

Query: 246 V 246
           +
Sbjct: 237 I 237


>gi|290955970|ref|YP_003487152.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645496|emb|CBG68584.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 164 LLAAYQANMFKSYDVH----WGKD----FELTGREVECLTWISEGKTSDEIAVILGISRN 215
           L AA  A +   +  H    W K+     ELT RE E L  ++ G T+D+I+  L +SR+
Sbjct: 128 LSAAATAALMGRFQAHAPRNWAKETERLAELTPREREMLVLVASGLTNDDISERLQLSRH 187

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  ++   M K     R+  +  A  + +V
Sbjct: 188 TVKTHVNRAMTKIGVSERAQLVTIAYESGLV 218


>gi|240014094|ref|ZP_04721007.1| NarL/NarP [Neisseria gonorrhoeae DGI18]
 gi|240016529|ref|ZP_04723069.1| NarL/NarP [Neisseria gonorrhoeae FA6140]
 gi|240115736|ref|ZP_04729798.1| NarL/NarP [Neisseria gonorrhoeae PID18]
 gi|240118032|ref|ZP_04732094.1| NarL/NarP [Neisseria gonorrhoeae PID1]
 gi|240121656|ref|ZP_04734618.1| NarL/NarP [Neisseria gonorrhoeae PID24-1]
 gi|268601415|ref|ZP_06135582.1| two-component system response regulator [Neisseria gonorrhoeae
           PID18]
 gi|268603746|ref|ZP_06137913.1| two-component system response regulator [Neisseria gonorrhoeae
           PID1]
 gi|268585546|gb|EEZ50222.1| two-component system response regulator [Neisseria gonorrhoeae
           PID18]
 gi|268587877|gb|EEZ52553.1| two-component system response regulator [Neisseria gonorrhoeae
           PID1]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|229820968|ref|YP_002882494.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566881|gb|ACQ80732.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 208

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  ++ G+++D++A  L +SR TV  ++A +  K    +R+ A+A A + 
Sbjct: 144 LALTRRELEVLELVARGRSNDDVARELFLSRATVKTHLAHVYDKLGVDSRTAAVAVARQR 203

Query: 244 NIV 246
            ++
Sbjct: 204 GLL 206


>gi|261401222|ref|ZP_05987347.1| nitrate/nitrite response regulator protein NarL [Neisseria
           lactamica ATCC 23970]
 gi|269208805|gb|EEZ75260.1| nitrate/nitrite response regulator protein NarL [Neisseria
           lactamica ATCC 23970]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|213967475|ref|ZP_03395623.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301386436|ref|ZP_07234854.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058672|ref|ZP_07250213.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131192|ref|ZP_07257182.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213927776|gb|EEB61323.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|253987738|ref|YP_003039094.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638616|emb|CAR67235.1| similar to probable transcription regulator sdia of escherichia
           coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779188|emb|CAQ82348.1| similar to probable transcription regulator SdiA of Escherichia
           coli [Photorhabdus asymbiotica]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 38/56 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + RE+E L + ++G TS EIA+ + ++++TV+ ++ +I++K   + +  AIA AV
Sbjct: 182 FSNRELEVLRYTADGMTSSEIALTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAV 237


>gi|251795472|ref|YP_003010203.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|304408019|ref|ZP_07389669.1| transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|247543098|gb|ACT00117.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2]
 gi|304343038|gb|EFM08882.1| transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A+   ++
Sbjct: 10  FLLTHREREVFELLVQDKTTRDIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIK 68


>gi|59801167|ref|YP_207879.1| NarL/NarP [Neisseria gonorrhoeae FA 1090]
 gi|194098688|ref|YP_002001750.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945]
 gi|239998996|ref|ZP_04718920.1| NarL/NarP [Neisseria gonorrhoeae 35/02]
 gi|240112982|ref|ZP_04727472.1| NarL/NarP [Neisseria gonorrhoeae MS11]
 gi|240125768|ref|ZP_04738654.1| NarL/NarP [Neisseria gonorrhoeae SK-92-679]
 gi|240128290|ref|ZP_04740951.1| NarL/NarP [Neisseria gonorrhoeae SK-93-1035]
 gi|254493787|ref|ZP_05106958.1| two-component system response regulator [Neisseria gonorrhoeae
           1291]
 gi|260440452|ref|ZP_05794268.1| NarL/NarP [Neisseria gonorrhoeae DGI2]
 gi|268594844|ref|ZP_06129011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599062|ref|ZP_06133229.1| two-component system response regulator [Neisseria gonorrhoeae
           MS11]
 gi|268684366|ref|ZP_06151228.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686687|ref|ZP_06153549.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043751|ref|ZP_06569467.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399036|ref|ZP_06643201.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria gonorrhoeae F62]
 gi|59718062|gb|AAW89467.1| putative nitrite/nitrate two-component system transcriptional
           response regulator [Neisseria gonorrhoeae FA 1090]
 gi|193933978|gb|ACF29802.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945]
 gi|226512827|gb|EEH62172.1| two-component system response regulator [Neisseria gonorrhoeae
           1291]
 gi|268548233|gb|EEZ43651.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583193|gb|EEZ47869.1| two-component system response regulator [Neisseria gonorrhoeae
           MS11]
 gi|268624650|gb|EEZ57050.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626971|gb|EEZ59371.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012214|gb|EFE04203.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610450|gb|EFF39560.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria gonorrhoeae F62]
 gi|317164288|gb|ADV07829.1| NarL/NarP [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|30022580|ref|NP_834211.1| germination protein gerE [Bacillus cereus ATCC 14579]
 gi|30264558|ref|NP_846935.1| germination protein GerE [Bacillus anthracis str. Ames]
 gi|47530023|ref|YP_021372.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187380|ref|YP_030632.1| germination protein GerE [Bacillus anthracis str. Sterne]
 gi|49481503|ref|YP_038542.1| germination protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141012|ref|YP_085817.1| germination protein [Bacillus cereus E33L]
 gi|65321856|ref|ZP_00394815.1| COG2771: DNA-binding HTH domain-containing proteins [Bacillus
           anthracis str. A2012]
 gi|75760738|ref|ZP_00740760.1| Germination protein gerE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118479654|ref|YP_896805.1| germination protein [Bacillus thuringiensis str. Al Hakam]
 gi|163942232|ref|YP_001647116.1| LuxR family transcriptional regulator [Bacillus weihenstephanensis
           KBAB4]
 gi|165871523|ref|ZP_02216170.1| germination protein GerE [Bacillus anthracis str. A0488]
 gi|167635626|ref|ZP_02393938.1| germination protein GerE [Bacillus anthracis str. A0442]
 gi|167641680|ref|ZP_02399925.1| germination protein GerE [Bacillus anthracis str. A0193]
 gi|170708363|ref|ZP_02898807.1| germination protein GerE [Bacillus anthracis str. A0389]
 gi|177653107|ref|ZP_02935394.1| germination protein GerE [Bacillus anthracis str. A0174]
 gi|190566971|ref|ZP_03019887.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I]
 gi|196034356|ref|ZP_03101765.1| germination protein GerE [Bacillus cereus W]
 gi|196039336|ref|ZP_03106642.1| germination protein GerE [Bacillus cereus NVH0597-99]
 gi|196044720|ref|ZP_03111954.1| germination protein GerE [Bacillus cereus 03BB108]
 gi|206969521|ref|ZP_03230475.1| germination protein GerE [Bacillus cereus AH1134]
 gi|206976107|ref|ZP_03237017.1| germination protein GerE [Bacillus cereus H3081.97]
 gi|217961984|ref|YP_002340554.1| germination protein GerE [Bacillus cereus AH187]
 gi|218231866|ref|YP_002369296.1| germination protein GerE [Bacillus cereus B4264]
 gi|218899656|ref|YP_002448067.1| germination protein GerE [Bacillus cereus G9842]
 gi|225866473|ref|YP_002751851.1| germination protein GerE [Bacillus cereus 03BB102]
 gi|227817270|ref|YP_002817279.1| germination protein GerE [Bacillus anthracis str. CDC 684]
 gi|228903018|ref|ZP_04067157.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222]
 gi|228910323|ref|ZP_04074139.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200]
 gi|228917128|ref|ZP_04080686.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228923243|ref|ZP_04086533.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228929537|ref|ZP_04092556.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935809|ref|ZP_04098621.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228941677|ref|ZP_04104224.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228948213|ref|ZP_04110497.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228954769|ref|ZP_04116790.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960765|ref|ZP_04122403.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228967593|ref|ZP_04128616.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228974604|ref|ZP_04135170.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981199|ref|ZP_04141499.1| Spore germination protein gerE [Bacillus thuringiensis Bt407]
 gi|228987740|ref|ZP_04147851.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229013700|ref|ZP_04170829.1| Spore germination protein gerE [Bacillus mycoides DSM 2048]
 gi|229032144|ref|ZP_04188120.1| Spore germination protein gerE [Bacillus cereus AH1271]
 gi|229048205|ref|ZP_04193774.1| Spore germination protein gerE [Bacillus cereus AH676]
 gi|229062182|ref|ZP_04199506.1| Spore germination protein gerE [Bacillus cereus AH603]
 gi|229072004|ref|ZP_04205214.1| Spore germination protein gerE [Bacillus cereus F65185]
 gi|229081752|ref|ZP_04214245.1| Spore germination protein gerE [Bacillus cereus Rock4-2]
 gi|229093586|ref|ZP_04224687.1| Spore germination protein gerE [Bacillus cereus Rock3-42]
 gi|229098957|ref|ZP_04229892.1| Spore germination protein gerE [Bacillus cereus Rock3-29]
 gi|229105124|ref|ZP_04235775.1| Spore germination protein gerE [Bacillus cereus Rock3-28]
 gi|229111961|ref|ZP_04241505.1| Spore germination protein gerE [Bacillus cereus Rock1-15]
 gi|229117986|ref|ZP_04247346.1| Spore germination protein gerE [Bacillus cereus Rock1-3]
 gi|229129784|ref|ZP_04258751.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4]
 gi|229135330|ref|ZP_04264123.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196]
 gi|229141231|ref|ZP_04269770.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26]
 gi|229147058|ref|ZP_04275418.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24]
 gi|229152693|ref|ZP_04280880.1| Spore germination protein gerE [Bacillus cereus m1550]
 gi|229158108|ref|ZP_04286177.1| Spore germination protein gerE [Bacillus cereus ATCC 4342]
 gi|229169225|ref|ZP_04296939.1| Spore germination protein gerE [Bacillus cereus AH621]
 gi|229180765|ref|ZP_04308103.1| Spore germination protein gerE [Bacillus cereus 172560W]
 gi|229186733|ref|ZP_04313891.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1]
 gi|229192698|ref|ZP_04319657.1| Spore germination protein gerE [Bacillus cereus ATCC 10876]
 gi|229602349|ref|YP_002868773.1| germination protein GerE [Bacillus anthracis str. A0248]
 gi|254724584|ref|ZP_05186367.1| germination protein GerE [Bacillus anthracis str. A1055]
 gi|254736592|ref|ZP_05194298.1| germination protein GerE [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741630|ref|ZP_05199317.1| germination protein GerE [Bacillus anthracis str. Kruger B]
 gi|254754772|ref|ZP_05206807.1| germination protein GerE [Bacillus anthracis str. Vollum]
 gi|254757604|ref|ZP_05209631.1| germination protein GerE [Bacillus anthracis str. Australia 94]
 gi|296504976|ref|YP_003666676.1| germination protein gerE [Bacillus thuringiensis BMB171]
 gi|301056000|ref|YP_003794211.1| germination protein [Bacillus anthracis CI]
 gi|29898138|gb|AAP11412.1| Germination protein gerE [Bacillus cereus ATCC 14579]
 gi|30259216|gb|AAP28421.1| germination protein GerE [Bacillus anthracis str. Ames]
 gi|47505171|gb|AAT33847.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181307|gb|AAT56683.1| germination protein GerE [Bacillus anthracis str. Sterne]
 gi|49333059|gb|AAT63705.1| germination protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51974481|gb|AAU16031.1| germination protein [Bacillus cereus E33L]
 gi|74491766|gb|EAO54960.1| Germination protein gerE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118418879|gb|ABK87298.1| germination protein [Bacillus thuringiensis str. Al Hakam]
 gi|163864429|gb|ABY45488.1| transcriptional regulator, LuxR family [Bacillus weihenstephanensis
           KBAB4]
 gi|164712820|gb|EDR18350.1| germination protein GerE [Bacillus anthracis str. A0488]
 gi|167510387|gb|EDR85788.1| germination protein GerE [Bacillus anthracis str. A0193]
 gi|167529046|gb|EDR91801.1| germination protein GerE [Bacillus anthracis str. A0442]
 gi|170126738|gb|EDS95621.1| germination protein GerE [Bacillus anthracis str. A0389]
 gi|172081631|gb|EDT66702.1| germination protein GerE [Bacillus anthracis str. A0174]
 gi|190561962|gb|EDV15931.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I]
 gi|195992898|gb|EDX56857.1| germination protein GerE [Bacillus cereus W]
 gi|196024208|gb|EDX62881.1| germination protein GerE [Bacillus cereus 03BB108]
 gi|196029963|gb|EDX68564.1| germination protein GerE [Bacillus cereus NVH0597-99]
 gi|206735209|gb|EDZ52377.1| germination protein GerE [Bacillus cereus AH1134]
 gi|206745859|gb|EDZ57256.1| germination protein GerE [Bacillus cereus H3081.97]
 gi|217063730|gb|ACJ77980.1| germination protein GerE [Bacillus cereus AH187]
 gi|218159823|gb|ACK59815.1| germination protein GerE [Bacillus cereus B4264]
 gi|218543532|gb|ACK95926.1| germination protein GerE [Bacillus cereus G9842]
 gi|225786008|gb|ACO26225.1| germination protein GerE [Bacillus cereus 03BB102]
 gi|227004247|gb|ACP13990.1| germination protein GerE [Bacillus anthracis str. CDC 684]
 gi|228590788|gb|EEK48648.1| Spore germination protein gerE [Bacillus cereus ATCC 10876]
 gi|228596746|gb|EEK54408.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1]
 gi|228602743|gb|EEK60226.1| Spore germination protein gerE [Bacillus cereus 172560W]
 gi|228614291|gb|EEK71402.1| Spore germination protein gerE [Bacillus cereus AH621]
 gi|228625337|gb|EEK82095.1| Spore germination protein gerE [Bacillus cereus ATCC 4342]
 gi|228630756|gb|EEK87398.1| Spore germination protein gerE [Bacillus cereus m1550]
 gi|228636446|gb|EEK92916.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24]
 gi|228642272|gb|EEK98564.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26]
 gi|228648128|gb|EEL04170.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196]
 gi|228653700|gb|EEL09571.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4]
 gi|228665435|gb|EEL20917.1| Spore germination protein gerE [Bacillus cereus Rock1-3]
 gi|228671525|gb|EEL26825.1| Spore germination protein gerE [Bacillus cereus Rock1-15]
 gi|228678305|gb|EEL32531.1| Spore germination protein gerE [Bacillus cereus Rock3-28]
 gi|228684455|gb|EEL38398.1| Spore germination protein gerE [Bacillus cereus Rock3-29]
 gi|228689795|gb|EEL43601.1| Spore germination protein gerE [Bacillus cereus Rock3-42]
 gi|228701597|gb|EEL54090.1| Spore germination protein gerE [Bacillus cereus Rock4-2]
 gi|228711163|gb|EEL63128.1| Spore germination protein gerE [Bacillus cereus F65185]
 gi|228717165|gb|EEL68841.1| Spore germination protein gerE [Bacillus cereus AH603]
 gi|228723192|gb|EEL74568.1| Spore germination protein gerE [Bacillus cereus AH676]
 gi|228729150|gb|EEL80150.1| Spore germination protein gerE [Bacillus cereus AH1271]
 gi|228747622|gb|EEL97496.1| Spore germination protein gerE [Bacillus mycoides DSM 2048]
 gi|228772014|gb|EEM20469.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228778399|gb|EEM26666.1| Spore germination protein gerE [Bacillus thuringiensis Bt407]
 gi|228785007|gb|EEM33020.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792084|gb|EEM39663.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228798900|gb|EEM45876.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228804889|gb|EEM51487.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228811571|gb|EEM57908.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228817889|gb|EEM63967.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228823866|gb|EEM69686.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830116|gb|EEM75734.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228836449|gb|EEM81800.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228842546|gb|EEM87636.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228849275|gb|EEM94113.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200]
 gi|228856611|gb|EEN01132.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222]
 gi|229266757|gb|ACQ48394.1| germination protein GerE [Bacillus anthracis str. A0248]
 gi|296326028|gb|ADH08956.1| germination protein gerE [Bacillus thuringiensis BMB171]
 gi|300378169|gb|ADK07073.1| germination protein [Bacillus cereus biovar anthracis str. CI]
 gi|324328393|gb|ADY23653.1| germination protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942284|gb|AEA18180.1| germination protein gerE [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0205]
          Length = 243

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N 
Sbjct: 181 EFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTELVRYALENG 240

Query: 245 IV 246
           +V
Sbjct: 241 LV 242


>gi|302185070|ref|ZP_07261743.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|297160777|gb|ADI10489.1| putative two-component regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 262

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+ A +        +  G+  +LT RE + L  ++ G+++ EIA  L I+  TV ++++ 
Sbjct: 137 LIHAVRHGPRPEVPIAKGRLEDLTERERDILVAVASGRSNAEIAAQLSIATTTVKSHVSR 196

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R  A+ +A  + +V
Sbjct: 197 ILTKIGARARVQAVVFAYESGLV 219


>gi|182415183|ref|YP_001820249.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842397|gb|ACB76649.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 212

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE++ L  +++G+++ EIA  L +   T   ++A+I+ K     R+ AI  AVR  
Sbjct: 148 QLSPRELDVLKLVAKGRSNKEIAAELHVVEGTAKIHVANILTKLGVSDRTQAIVVAVRRG 207

Query: 245 IV 246
           I+
Sbjct: 208 II 209


>gi|170720829|ref|YP_001748517.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169758832|gb|ACA72148.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 219

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L  I  GK++ EIA  L +S  TV  + + IM++      +G + +AVR  I
Sbjct: 155 LTARQLEILRLIVRGKSTREIAAGLALSIKTVETHRSQIMKRLQIYDVAGLVLFAVREKI 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|27382083|ref|NP_773612.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355253|dbj|BAC52237.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 261

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           GL+ AY  N      +      +LT RE + L  +  G  +  IA  LG+S +TV  +I 
Sbjct: 163 GLVPAYLINEGARVAIDRRSVTDLTPREQQVLAELELGLPNKLIAAKLGLSESTVKMHIQ 222

Query: 223 SIMRKTATKTRSGAI 237
            IMRK A   R+ A+
Sbjct: 223 HIMRKCAAHNRTEAV 237


>gi|21220292|ref|NP_626071.1| two component response regulator [Streptomyces coelicolor A3(2)]
 gi|5123537|emb|CAB45293.1| putative two component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 210

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +A
Sbjct: 144 GRAGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 203

Query: 241 VRNNI 245
           VR+ +
Sbjct: 204 VRHGV 208


>gi|17549798|ref|NP_523138.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
 gi|17432053|emb|CAD18730.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 252

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           L+ RE E    I +GK++ EIA+++  S NTV +Y++SIM KT  + R
Sbjct: 183 LSEREREVALLIGQGKSNAEIALLVCKSENTVKHYLSSIMDKTGCENR 230


>gi|284032390|ref|YP_003382321.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811683|gb|ADB33522.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 228

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GR +E +  I+ G+T+ EIA  L IS +TV +++A+I  K   + R+    +A  N+
Sbjct: 154 ELSGRALEVVRAIARGRTNQEIAAELFISLSTVKSHLAAIQAKLGVRNRTEIAVWAWENH 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|330897659|gb|EGH29078.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|300865100|ref|ZP_07109925.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300336871|emb|CBN55075.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 210

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N+     V      +L+ RE E L  + EG ++ EIA  L +S NT+  ++  IM K A 
Sbjct: 135 NLKPPTPVSTASIGQLSQRESEVLKLMVEGYSNPEIAAALYLSPNTIKTHVRGIMNKLAV 194

Query: 231 KTRSGAIAYAVRNNIV 246
             R  A   A+R  +V
Sbjct: 195 DDRVQAAVVALRAGLV 210


>gi|261392488|emb|CAX50039.1| putative two-component system transcriptional regulator protein
           [Neisseria meningitidis 8013]
 gi|308389343|gb|ADO31663.1| putative two-component system response regulator narL [Neisseria
           meningitidis alpha710]
 gi|325128344|gb|EGC51228.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           N1568]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|240080653|ref|ZP_04725196.1| NarL/NarP [Neisseria gonorrhoeae FA19]
 gi|240123586|ref|ZP_04736542.1| NarL/NarP [Neisseria gonorrhoeae PID332]
 gi|268596776|ref|ZP_06130943.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268682215|ref|ZP_06149077.1| two-component system response regulator [Neisseria gonorrhoeae
           PID332]
 gi|268550564|gb|EEZ45583.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268622499|gb|EEZ54899.1| two-component system response regulator [Neisseria gonorrhoeae
           PID332]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|239930001|ref|ZP_04686954.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces ghanaensis ATCC 14672]
          Length = 209

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT REVE L  ++EG  + +IA    +S  TV NY+ +I+ K   + R  A+  A  
Sbjct: 145 DSPLTEREVEVLARVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARD 204

Query: 243 NN 244
           N 
Sbjct: 205 NG 206


>gi|254521643|ref|ZP_05133698.1| regulatory protein, LuxR:Response regulator receiver
           [Stenotrophomonas sp. SKA14]
 gi|219719234|gb|EED37759.1| regulatory protein, LuxR:Response regulator receiver
           [Stenotrophomonas sp. SKA14]
          Length = 225

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 166 AAYQANMFKSYDVH-------WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           AA +   + S DV         G +  LT RE E L  I+EG +  EIA  L  SR T++
Sbjct: 121 AARKGEGYLSADVERQLASRPEGGEAHLTKREAEVLRLIAEGLSQTEIAAQLQRSRQTIS 180

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
               S MRK   +  +    YAV+  +V
Sbjct: 181 TQKHSAMRKLGMQRPAEIFEYAVQTGMV 208


>gi|126724411|ref|ZP_01740254.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126705575|gb|EBA04665.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +++ RD++ E+ + A +  +     DV     +   L+ RE E L W + GKT  +I  I
Sbjct: 139 KLLTRDKISELQMAAVHLHDSVMQSDVLSRALRRPSLSARETEVLQWTAIGKTQQDIGDI 198

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  ++ S   K    T   A+  A+   I+
Sbjct: 199 LSISHRTVEVHMRSAREKLGALTTIQAVGRAIGYQII 235


>gi|86606978|ref|YP_475741.1| LuxR family transcriptional regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555520|gb|ABD00478.1| transcriptional regulator, LuxR family [Synechococcus sp. JA-3-3Ab]
          Length = 87

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 181 GKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           G D+     L+ RE++ L  I+ G T+ +IA  L IS+ TV+N+I++I+ KT T  R   
Sbjct: 2   GADYHSADLLSERELQVLELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTSNRVAL 61

Query: 237 IAYAVR 242
           + +A++
Sbjct: 62  VRWALQ 67


>gi|56697420|ref|YP_167788.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56679157|gb|AAV95823.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 216

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 149 LTGREQTILLQLAQGKSNKEVAIALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|302557514|ref|ZP_07309856.1| LuxR family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475132|gb|EFL38225.1| LuxR family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 144

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 36/76 (47%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           QA    + +        LT REV+ L  ++ G T+   A  LG++  TV  Y+ S MRK 
Sbjct: 66  QACALLTAETAPSVTVRLTPREVDVLACVAAGATNGVAAERLGVTAETVKAYLRSAMRKL 125

Query: 229 ATKTRSGAIAYAVRNN 244
             +TR  A+  A R  
Sbjct: 126 GVRTRGQAVVAARRAG 141


>gi|292491684|ref|YP_003527123.1| LuxR family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580279|gb|ADE14736.1| regulatory protein LuxR [Nitrosococcus halophilus Nc4]
          Length = 229

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P  + +L  RLW       Y     K  +    +   LT RE E +  + +G+ +  IA 
Sbjct: 129 PWQKSVLLKRLWACMEKDQYARENKKKQEEIIARMARLTPREWEVMELVVKGRLNKVIAF 188

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            LGIS  TV N+ A +M+K   KT++  I  A+
Sbjct: 189 ELGISLKTVENHRAQVMKKLQVKTQADLIRLAL 221


>gi|288918024|ref|ZP_06412382.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350542|gb|EFC84761.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 282

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F L+ RE++ L  ++EG ++ E A  L +S  TV  Y+ SIM K     R+ A+  A 
Sbjct: 217 QPFGLSPRELDVLRLVAEGMSNAETARRLAVSPETVKAYLRSIMNKLGVHNRTAAVNVAR 276

Query: 242 RNNIV 246
           R++++
Sbjct: 277 RSSLL 281


>gi|269836626|ref|YP_003318854.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
            DSM 20745]
 gi|269785889|gb|ACZ38032.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
            DSM 20745]
          Length = 1034

 Score = 42.4 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+ RE+E L  ++EG T  E+A  L IS  TV  ++ SI  K    +R+ A ++A +  +
Sbjct: 973  LSAREIEVLRLVAEGLTDAEVAERLSISPRTVGGHLQSIYNKLGISSRTAATSFAHKFGL 1032

Query: 246  V 246
            V
Sbjct: 1033 V 1033


>gi|226309987|ref|YP_002769881.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092935|dbj|BAH41377.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G ++ EIA  L +S  TV ++ A IM K   +TR   + YA++  
Sbjct: 155 LTDREKEVLVLIAKGFSNKEIAEQLTVSVKTVESHKAHIMEKLHLRTRPDLVRYAIKKG 213


>gi|170688263|ref|ZP_02879473.1| germination protein GerE [Bacillus anthracis str. A0465]
 gi|254687022|ref|ZP_05150880.1| germination protein GerE [Bacillus anthracis str. CNEVA-9066]
 gi|170667769|gb|EDT18522.1| germination protein GerE [Bacillus anthracis str. A0465]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|161724877|emb|CAO85750.1| LasR protein [Pseudomonas aeruginosa]
          Length = 239

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A Q+    +++    K   LT RE E L W + GKTS EI+VI   S   VN ++ +I R
Sbjct: 158 ALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    +R  A   AV   ++
Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237


>gi|73672744|gb|AAZ80478.1| PpuR [Pseudomonas putida]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 42/244 (17%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP------F 84
           D L R+  ++    W   +  LT  +G S+FL+       +     ++ SD+P      +
Sbjct: 7   DELLRLSEMERFEDWLAHLKILTRKLGYSNFLIGLKPAPTDANQQVLIYSDYPDAWRTRY 66

Query: 85  D----------LVRCMA-----LSEKDKYYNVLQRPTE---LFCPVFHTLPENIT----P 122
           D          +  C+      L ++D Y    +RP+E         H L + +      
Sbjct: 67  DAESYAAVDPVVQHCLNANRPLLWDRDNY----RRPSESEFFEEAAAHGLQQGLALPLHG 122

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           P G     C   F+        M+       +LRD   E G+L   +A +  S  VH   
Sbjct: 123 PRGEAGMLCLKPFESGPRATATMIESLPMATLLRDYAME-GML---KARIECSTPVH--- 175

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L W + GKT+ EI++IL  + + ++ +  +I RK    +R  A+  A++
Sbjct: 176 ---LTSREKEVLQWSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQ 232

Query: 243 NNIV 246
              +
Sbjct: 233 QKSI 236


>gi|328881486|emb|CCA54725.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 214

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 172 MFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           +    D H G  +   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K  
Sbjct: 137 LLAQEDSHGGTGRGSTLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLD 196

Query: 230 TKTRSGAIAYAVRNNI 245
              R+ A  +AVR+ +
Sbjct: 197 LADRTQAALWAVRHGL 212


>gi|239945707|ref|ZP_04697644.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239992177|ref|ZP_04712841.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291449166|ref|ZP_06588556.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291352113|gb|EFE79017.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 232

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  ++EG +S EIA +L IS  TV  + A++++K   + R     YA+R  +
Sbjct: 170 ITEREEEILKLVAEGHSSKEIAELLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGL 229

Query: 246 V 246
           +
Sbjct: 230 I 230


>gi|149922983|ref|ZP_01911402.1| response regulator receiver [Plesiocystis pacifica SIR-1]
 gi|149816169|gb|EDM75678.1| response regulator receiver [Plesiocystis pacifica SIR-1]
          Length = 371

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT R+ E   W+S GKT+ EI+ IL I   TV  ++  I+ +   + R+GA
Sbjct: 309 LTPRQAEVALWMSCGKTNAEISTILSIRPATVKKHVERILDRLGVENRTGA 359


>gi|187918993|ref|YP_001888024.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717431|gb|ACD18654.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 234

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  
Sbjct: 170 KLTPRERECLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLG 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|15895522|ref|NP_348871.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025256|gb|AAK80211.1|AE007726_2 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325509670|gb|ADZ21306.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE+E    ++ GK++ EI+  L IS  TV NYI+ I++K   + R+  +A
Sbjct: 154 LTEREMEITKLVTSGKSNKEISETLFISEGTVKNYISKILKKLKLQRRTQLLA 206


>gi|56421205|ref|YP_148523.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|138896235|ref|YP_001126688.1| germination protein GerE [Geobacillus thermodenitrificans NG80-2]
 gi|196250193|ref|ZP_03148887.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|261418314|ref|YP_003251996.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297529168|ref|YP_003670443.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319767726|ref|YP_004133227.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|56381047|dbj|BAD76955.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|134267748|gb|ABO67943.1| Germination protein GerE [Geobacillus thermodenitrificans NG80-2]
 gi|196210377|gb|EDY05142.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|261374771|gb|ACX77514.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|297252420|gb|ADI25866.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
 gi|317112592|gb|ADU95084.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREKEVFELLVQDKTTKEIAKELFISEKTVRNHISNAMQKLGVKGRSQAVIELLR 68


>gi|114799510|ref|YP_759982.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739684|gb|ABI77809.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC
           15444]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE + L  I  G  + E+A  L +S NTV +YI  I RK    +R+ A  +A R
Sbjct: 146 DDDLTARERDVLALIGRGMRNGEVARALDLSENTVASYIKGIYRKLGISSRAEASWHATR 205

Query: 243 NNI 245
             +
Sbjct: 206 MGL 208


>gi|94309557|ref|YP_582767.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93353409|gb|ABF07498.1| Two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 231

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 165 LAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LA   A +    +V  G       L+ RE+E L+ +S+G T+ EIA +L +S+ TV  +I
Sbjct: 146 LAGKMAPLAGGAEVQAGPTVGAPPLSAREIEILSLVSKGLTNREIAEVLSLSKLTVECHI 205

Query: 222 ASIMRKTATKTRSGAI 237
            +  +K A  +R+ A+
Sbjct: 206 RNSYKKLAVHSRTQAV 221


>gi|78047709|ref|YP_363884.1| two-component response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036139|emb|CAJ23830.1| two-component response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 214

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G+D +L+ RE+E L  ++ G  + EIA  L ++  TV  ++  I+ K   K R+ A+ 
Sbjct: 146 HAGED-DLSPREMEVLRELARGNANREIAESLSVTEGTVKAHMKRILSKLGAKDRTHAVL 204

Query: 239 YAVRNNIV 246
            A++  I+
Sbjct: 205 LALKRGIL 212


>gi|330468505|ref|YP_004406248.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032]
 gi|328811476|gb|AEB45648.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L   +EG    EIA  L ++  TV N+++++MRKT T+ R  A+  A R+ 
Sbjct: 132 LTRREAEVLRAAAEGLPLKEIARRLFLAHGTVRNHLSAVMRKTGTRNRMEAVWQARRHG 190


>gi|256788589|ref|ZP_05527020.1| two component response regulator [Streptomyces lividans TK24]
 gi|289772481|ref|ZP_06531859.1| two component response regulator [Streptomyces lividans TK24]
 gi|289702680|gb|EFD70109.1| two component response regulator [Streptomyces lividans TK24]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +A
Sbjct: 147 GRAGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 206

Query: 241 VRNNI 245
           VR+ +
Sbjct: 207 VRHGV 211


>gi|154503122|ref|ZP_02040182.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149]
 gi|153796116|gb|EDN78536.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 39/63 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D++++ RE+E +  I++G ++ EIA  L +S  TV NY++SI+ K   + R+    +  
Sbjct: 144 EDYDISERELEIIRLIADGLSNKEIASRLFLSEGTVRNYLSSILDKLDLRDRTQVAVFYY 203

Query: 242 RNN 244
           R+ 
Sbjct: 204 RHK 206


>gi|284046827|ref|YP_003397167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951048|gb|ADB53792.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G+ + EIA ++ +S  TV  ++ S+  K     R+ A+A A+R  +
Sbjct: 154 LTPRELEVLGHVAAGRGAPEIARLIHLSPATVKGHLQSLYEKLGVSDRAAAVAEAMRRGL 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|269956981|ref|YP_003326770.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305662|gb|ACZ31212.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 937

 Score = 42.4 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE + L  ++EG T+ +IA  L IS  TV+ ++++I+RK    +R+ A    VR
Sbjct: 879 LTAREEQVLALVAEGLTNGQIAARLFISVKTVSVHVSAILRKLGVSSRTEAALKGVR 935


>gi|188585327|ref|YP_001916872.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350014|gb|ACB84284.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE++ L  +++GKT+ EI   L +S  TV N ++ I+ K     R+ A AY V
Sbjct: 151 LTNREMDILDLVAKGKTNSEIGEELHLSEKTVRNQLSRILNKLDLNNRTQAAAYYV 206


>gi|163758001|ref|ZP_02165089.1| putative LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284290|gb|EDQ34573.1| putative LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 253

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE+ECL  +  G  S+ I   L +S +TVN Y+ S   K     R  AIA ++R  
Sbjct: 191 KLNEREIECLQLVGNGMKSEAIGERLNLSVHTVNAYLGSATTKLDAVNRIQAIAKSIRLG 250

Query: 245 IV 246
           I+
Sbjct: 251 II 252


>gi|161870093|ref|YP_001599263.1| two-component system, NarL family nitrate/nitrite response
           regulator [Neisseria meningitidis 053442]
 gi|161595646|gb|ABX73306.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria meningitidis 053442]
 gi|254673916|emb|CBA09700.1| putative two-component system response regulator [Neisseria
           meningitidis alpha275]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|149201851|ref|ZP_01878825.1| nitrate/nitrite regulatory protein [Roseovarius sp. TM1035]
 gi|149144899|gb|EDM32928.1| nitrate/nitrite regulatory protein [Roseovarius sp. TM1035]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  + +G T+ +I+  LG+S NTV  Y+ +I +K    +R GAIA
Sbjct: 154 LTRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGGAIA 206


>gi|226308732|ref|YP_002768692.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226187849|dbj|BAH35953.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 511

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E LT +    T+DEIA  LGI+  TV  +I SI RK     R  A+  A
Sbjct: 434 LTERENEILTLLRTTMTADEIAAHLGIAYPTVKTHIRSIYRKLGVAKRRAAVQAA 488


>gi|225018320|ref|ZP_03707512.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum
           DSM 5476]
 gi|224948920|gb|EEG30129.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum
           DSM 5476]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E +  I+EG ++ EIA  L +S  TV N+I+ I+ KT  + R+    + ++ N
Sbjct: 148 LTPREMEVVALIAEGLSNKEIAERLFLSNGTVRNHISVILEKTGLEHRTQIAVHFLKGN 206


>gi|330879892|gb|EGH14041.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|325927834|ref|ZP_08189059.1| two component transcriptional regulator, LuxR family [Xanthomonas
           perforans 91-118]
 gi|325541824|gb|EGD13341.1| two component transcriptional regulator, LuxR family [Xanthomonas
           perforans 91-118]
          Length = 200

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G+D +L+ RE+E L  ++ G  + EIA  L ++  TV  ++  I+ K   K R+ A+ 
Sbjct: 132 HAGED-DLSPREMEVLRELARGNANREIAESLSVTEGTVKAHMKRILSKLGAKDRTHAVL 190

Query: 239 YAVRNNIV 246
            A++  I+
Sbjct: 191 LALKRGIL 198


>gi|312138951|ref|YP_004006287.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311888290|emb|CBH47602.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 214

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G   ELT +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A  
Sbjct: 136 QPGAPGELTAQERRLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLEKLGVERRAQAAV 195

Query: 239 YAVRNNI 245
            A R+ +
Sbjct: 196 LAARSGL 202


>gi|298253881|ref|ZP_06977468.1| response regulator of two-component system [Gardnerella vaginalis
           5-1]
 gi|297532024|gb|EFH70999.1| response regulator of two-component system [Gardnerella vaginalis
           5-1]
          Length = 257

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N 
Sbjct: 194 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVFAYENG 253

Query: 245 IV 246
           +V
Sbjct: 254 LV 255


>gi|261880311|ref|ZP_06006738.1| transcriptional regulator [Prevotella bergensis DSM 17361]
 gi|270333001|gb|EFA43787.1| transcriptional regulator [Prevotella bergensis DSM 17361]
          Length = 318

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+GRE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA
Sbjct: 246 GSQENLSGREKDVIIALVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYA 305

Query: 241 VRNNIV 246
           + NN+V
Sbjct: 306 IVNNLV 311


>gi|163744442|ref|ZP_02151802.1| transcriptional regulator, LuxR family protein [Oceanibulbus
           indolifex HEL-45]
 gi|161381260|gb|EDQ05669.1| transcriptional regulator, LuxR family protein [Oceanibulbus
           indolifex HEL-45]
          Length = 239

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W + GKT+ E A I+ +S +TVN+++ +   K     ++ A+A A+R  +
Sbjct: 177 LSRREKEVLKWAAVGKTAWETAQIMTVSNSTVNHHLYNACAKLDVANKTHAVAKAIRAQL 236

Query: 246 V 246
           +
Sbjct: 237 I 237


>gi|149182102|ref|ZP_01860586.1| DegU [Bacillus sp. SG-1]
 gi|148850204|gb|EDL64370.1| DegU [Bacillus sp. SG-1]
          Length = 225

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+   ++N
Sbjct: 162 LTRRECEVLQMLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVTGIKN 219


>gi|94971093|ref|YP_593141.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553143|gb|ABF43067.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 233

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT R+ E L  ++EGK   E+A IL ++  TV  +   IM    TK  +  + YAVRN 
Sbjct: 170 KLTDRQREVLQLLAEGKGMKEVAAILNMTTRTVAFHKYRIMEVLGTKNNADLVKYAVRNR 229

Query: 245 I 245
           +
Sbjct: 230 M 230


>gi|15677121|ref|NP_274273.1| LuxR family transcriptional regulator [Neisseria meningitidis MC58]
 gi|218768252|ref|YP_002342764.1| putative two-component system response regulator [Neisseria
           meningitidis Z2491]
 gi|7226490|gb|AAF41630.1| transcriptional regulator, LuxR family [Neisseria meningitidis
           MC58]
 gi|121052260|emb|CAM08585.1| putative two-component system response regulator [Neisseria
           meningitidis Z2491]
 gi|325140520|gb|EGC63041.1| transcriptional regulatory protein DegU [Neisseria meningitidis
           CU385]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|258652817|ref|YP_003201973.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556042|gb|ACV78984.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 217

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +  I+EG ++ EIA  L IS  TV+ + A+I+ K   + R     YA+R  +
Sbjct: 155 LTPREADVVKLIAEGHSAQEIADCLSISPRTVDRHRANILEKLDLRDRVDLTRYAIRAGL 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|258652113|ref|YP_003201269.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258555338|gb|ACV78280.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 230

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G  + EIA  L  S+ TV N +  +  +   + RS A+AYAVR  +
Sbjct: 170 LSDREAEVLKLVANGHDTAEIAGRLSYSQRTVKNILHDVTTRLQLRNRSHAVAYAVREGL 229

Query: 246 V 246
           +
Sbjct: 230 I 230


>gi|148977874|ref|ZP_01814429.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145962943|gb|EDK28214.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+A +
Sbjct: 140 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 199

Query: 243 N 243
           N
Sbjct: 200 N 200


>gi|89098909|ref|ZP_01171789.1| germination protein [Bacillus sp. NRRL B-14911]
 gi|89086313|gb|EAR65434.1| germination protein [Bacillus sp. NRRL B-14911]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|229010418|ref|ZP_04167622.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048]
 gi|229165953|ref|ZP_04293718.1| Sensory transduction protein ydfI [Bacillus cereus AH621]
 gi|228617506|gb|EEK74566.1| Sensory transduction protein ydfI [Bacillus cereus AH621]
 gi|228750838|gb|EEM00660.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048]
          Length = 161

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +K  +VH  K  E  LT +E+  L  I+ G  + EIA  +GI+  TV  Y+ +I  K   
Sbjct: 84  YKRKEVHADKVAENNLTVKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGV 143

Query: 231 KTRSGAIAYAVRNNIV 246
            +RS A+A ++   ++
Sbjct: 144 NSRSEAVAVSIERKLI 159


>gi|313668365|ref|YP_004048649.1| two-component system response regulator [Neisseria lactamica
           ST-640]
 gi|313005827|emb|CBN87281.1| putative two-component system response regulator [Neisseria
           lactamica 020-06]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|288916220|ref|ZP_06410600.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288352411|gb|EFC86608.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 211

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L  RE + L  I+EG T+ +IA  + +S  TV NY+++I+ K    +R+ A  +A R
Sbjct: 152 LGARERQILRLIAEGMTNRQIAACVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAAR 208


>gi|283783120|ref|YP_003373874.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|283441895|gb|ADB14361.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
          Length = 261

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N 
Sbjct: 198 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVFAYENG 257

Query: 245 IV 246
           +V
Sbjct: 258 LV 259


>gi|116694572|ref|YP_728783.1| response regulator [Ralstonia eutropha H16]
 gi|113529071|emb|CAJ95418.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 235

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 35/52 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE+E L+ + +G T+ EIA +L +SR TV  +I +I +K A  +R+ A+
Sbjct: 174 LSAREIEILSLVGKGLTNREIADLLSLSRLTVECHIRNIYKKLAVHSRTQAV 225


>gi|28869252|ref|NP_791871.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852493|gb|AAO55566.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|330964604|gb|EGH64864.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016917|gb|EGH96973.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|319789390|ref|YP_004151023.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans
           HB-1]
 gi|317113892|gb|ADU96382.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans
           HB-1]
          Length = 193

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ L+ + EGKT+ EIA  LGIS  TV  YI  +++K     R   ++   R
Sbjct: 129 LSDRELKVLSLLVEGKTNKEIARELGISEQTVKYYINQLLKKANCSNRVNLVSLFSR 185


>gi|313499034|gb|ADR60400.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 127

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L W+++G T+ EIA  + +S  TV N I + + K     R  A+  A+R  I
Sbjct: 17  LAPRELEALLWVAQGLTTKEIARQMAVSPGTVANRIEAALFKLEAGRRIEAVTKAMRQQI 76

Query: 246 V 246
           +
Sbjct: 77  I 77


>gi|306431674|emb|CBM41479.1| N-acyl homoserine lactone sensor/regulator [Erwinia toletana]
          Length = 245

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIAVILGI  +TV  +I ++++K        AI   V 
Sbjct: 180 FSQRENEILYWASIGKTYPEIAVILGIKISTVKFHIGNVVKKLGVLNAKHAIRLGVE 236


>gi|304406993|ref|ZP_07388647.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304343980|gb|EFM09820.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 200

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W     LT RE E L + SEG ++ EIA  + ++  TV NY++  +RK   K R  AI+ 
Sbjct: 133 WEAGNPLTEREQEVLRYASEGLSAREIAARVHLTAGTVRNYMSESIRKLEAKNRIDAISI 192

Query: 240 AVRNN 244
           A    
Sbjct: 193 ATHKG 197


>gi|256785392|ref|ZP_05523823.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769288|ref|ZP_06528666.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289699487|gb|EFD66916.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 204

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A RN 
Sbjct: 144 LTDREREILRAAADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVA-RNK 201


>gi|167761739|ref|ZP_02433866.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC
           43183]
 gi|167700375|gb|EDS16954.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC
           43183]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I++G  + EIA  L IS  TV  +  +I+ K   K+ SG   YAV + 
Sbjct: 140 ELSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVMHG 199

Query: 245 IV 246
            +
Sbjct: 200 YI 201


>gi|163747813|ref|ZP_02155152.1| putative GerE family transcriptional regulator [Oceanibulbus
           indolifex HEL-45]
 gi|161378921|gb|EDQ03351.1| putative GerE family transcriptional regulator [Oceanibulbus
           indolifex HEL-45]
          Length = 186

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            KD ELT RE++ LT ++EGK +  IA  LG+S +TV  +I  ++ K     R+ A
Sbjct: 117 AKD-ELTNREMQVLTCVAEGKQNKVIANSLGLSEHTVKLHIHHVISKLGVNNRTEA 171


>gi|68535964|ref|YP_250669.1| two-component system response regulator TcsR2 [Corynebacterium
           jeikeium K411]
 gi|68263563|emb|CAI37051.1| two-component system response regulator TcsR2 [Corynebacterium
           jeikeium K411]
          Length = 200

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 32/62 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E    + EGK+S  IA  L +S  TV N+I+SIM KT    R  A   A  
Sbjct: 137 DNPLSERETEVCQQLFEGKSSPAIAKALHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKT 196

Query: 243 NN 244
           N 
Sbjct: 197 NG 198


>gi|330876121|gb|EGH10270.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|289626430|ref|ZP_06459384.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649584|ref|ZP_06480927.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866354|gb|EGH01063.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|304413627|ref|ZP_07395071.1| DNA-binding HTH domain-containing protein invovled in quorum
           sensing [Candidatus Regiella insecticola LSR1]
 gi|304283718|gb|EFL92112.1| DNA-binding HTH domain-containing protein invovled in quorum
           sensing [Candidatus Regiella insecticola LSR1]
          Length = 252

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 33/66 (50%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K  + + RE E L W S GKT  EIA+I GI   TV  ++ +I++K        AI   
Sbjct: 184 SKKEKFSSRENEVLYWFSMGKTYSEIAIIFGIKLGTVKFHMGNIVKKLGVLNAKHAIRLG 243

Query: 241 VRNNIV 246
             + ++
Sbjct: 244 TESQLI 249


>gi|326775192|ref|ZP_08234457.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326655525|gb|EGE40371.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 230

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  ++EG +S EIA +L IS  TV  + A++++K   + R     YA+R  +
Sbjct: 168 ITEREEEILKLVAEGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGL 227

Query: 246 V 246
           +
Sbjct: 228 I 228


>gi|238796231|ref|ZP_04639741.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
 gi|238719924|gb|EEQ11730.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
          Length = 123

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           RE E L W S GKT  EI++ILGI   TV  +I ++++K        AI   V
Sbjct: 61  RENEILYWASNGKTYQEISLILGIKTGTVKFHIGNVVKKLGVLNAKHAIKLGV 113


>gi|311068596|ref|YP_003973519.1| two-component response regulator DesK [Bacillus atrophaeus 1942]
 gi|310869113|gb|ADP32588.1| two-component response regulator (DesK) [Bacillus atrophaeus 1942]
          Length = 199

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI
Sbjct: 138 LTEREKEVLELVADGKNTKEIANELSIKSGTVRNYISMILDKLEVKNRIEAI 189


>gi|307330717|ref|ZP_07609854.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883609|gb|EFN14658.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 214

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 153 LTEREREVLALIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 212


>gi|288800041|ref|ZP_06405500.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288333289|gb|EFC71768.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 200

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L+ + +G  + EIA IL IS  TV  +  +I+ K   K+ S    YAV +  
Sbjct: 135 LTDREIEVLSLLVQGHINKEIATILHISLTTVITHRKNIVEKLGMKSVSALTIYAVTHGY 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|257484466|ref|ZP_05638507.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331013268|gb|EGH93324.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|254486014|ref|ZP_05099219.1| transcription regulator, LuxR family, putative [Roseobacter sp.
           GAI101]
 gi|214042883|gb|EEB83521.1| transcription regulator, LuxR family, putative [Roseobacter sp.
           GAI101]
          Length = 248

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L WI++GK++  +A I+GISR+TV+     +  K     R+ A    +   +
Sbjct: 180 LSPRELEVLRWIAQGKSNSVMADIMGISRHTVDTITRRMFEKLEVTDRTRAAVRGISAGL 239

Query: 246 V 246
           +
Sbjct: 240 L 240


>gi|188990306|ref|YP_001902316.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732066|emb|CAP50258.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 921

 Score = 42.4 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 37/58 (63%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R GA+A A++  ++
Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARSREGALAQALQRGLL 909


>gi|159901290|ref|YP_001547537.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894329|gb|ABX07409.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 208

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +  G+++ EIA+ L I+  TV  ++ +I+ K     R+ A++ AVR  +
Sbjct: 145 LTPRELEVLHLLGRGRSNGEIALELDIALRTVKVHVQNILGKLGATNRTEAVSIAVRQQL 204

Query: 246 V 246
           +
Sbjct: 205 I 205


>gi|126649458|ref|ZP_01721699.1| YhcZ [Bacillus sp. B14905]
 gi|169825964|ref|YP_001696122.1| two-component response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|126593783|gb|EAZ87706.1| YhcZ [Bacillus sp. B14905]
 gi|168990452|gb|ACA37992.1| two-component response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
          Length = 215

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++GK++ EIA  L ++  TV  +I++I  K   + R+ A  YAV++ +
Sbjct: 150 LTPREQDVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209


>gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 212

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 42/68 (61%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +   ++ ELT  E + + +++ G ++ EIA +LG+S+ TV +++++++ KT    R+   
Sbjct: 140 IKLDREIELTPTETKVIQYVARGLSNREIAEVLGVSQRTVESHVSNMLGKTGLHNRTELA 199

Query: 238 AYAVRNNI 245
            +A+ + +
Sbjct: 200 RWAIESGL 207


>gi|21232702|ref|NP_638619.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767223|ref|YP_241985.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114513|gb|AAM42543.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572555|gb|AAY47965.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 921

 Score = 42.4 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 37/58 (63%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R GA+A A++  ++
Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARSREGALAQALQRGLL 909


>gi|186684363|ref|YP_001867559.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466815|gb|ACC82616.1| transcriptional regulator, LuxR family [Nostoc punctiforme PCC
           73102]
          Length = 87

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 39/57 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   + +A++
Sbjct: 12  LSDRELQIIDLVAAGLTNQEIAGKLEISKRTVDNHISNILTKTETENRVALVRWALQ 68


>gi|311031417|ref|ZP_07709507.1| germination protein [Bacillus sp. m3-13]
          Length = 64

 Score = 42.4 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 2   LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 58


>gi|296156923|ref|ZP_06839760.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295892809|gb|EFG72590.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 234

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  
Sbjct: 170 KLTPRERECLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLG 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|262200493|ref|YP_003271701.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262083840|gb|ACY19808.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 271

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F LT  E   L ++  G T+D+IA +L +S NTV  +  SI RK    TR  A+  A 
Sbjct: 207 EQFHLTPSERRVLDFLPSGYTADQIAGMLSVSVNTVKTHSRSIYRKLQVSTRRDAVMVAR 266

Query: 242 RNNIV 246
           R  ++
Sbjct: 267 RAGLL 271


>gi|163858475|ref|YP_001632773.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262203|emb|CAP44505.1| transcriptional regulator, LuxR-family [Bordetella petrii]
          Length = 269

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT R++E   W+++GK+++ IA  + +S +TV  ++ +I  K  T +R
Sbjct: 191 LTQRQIETAVWLAQGKSNEAIAAAMNVSLDTVKAHLKAIFNKIGTNSR 238


>gi|149182664|ref|ZP_01861132.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849633|gb|EDL63815.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 216

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  + EG T+ EI+  L I   T   ++++I+ K     R+ A  YA RN 
Sbjct: 149 DLTTRELEVLKCLGEGMTNQEISDELFIGVKTTKTHVSNILSKLGVADRTQAAIYANRNG 208

Query: 245 IV 246
           I+
Sbjct: 209 IL 210


>gi|72162677|ref|YP_290334.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916409|gb|AAZ56311.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 217

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L   + G ++ EIA  L +S  TV N+I  I RK   +TR+ AIA
Sbjct: 155 LTEREAEVLEAAARGLSNAEIAKELFLSEKTVKNHINRIFRKLGVRTRAAAIA 207


>gi|56964425|ref|YP_176156.1| transcriptional regulator of spore coat protein [Bacillus clausii
           KSM-K16]
 gi|56910668|dbj|BAD65195.1| transcriptional regulator of spore coat protein [Bacillus clausii
           KSM-K16]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 181 GKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           G DF     LT RE E    + + +T+ EIA  L IS  TV N+I++ M+K   K RS A
Sbjct: 3   GADFGPKPLLTKREREVFELLVQDQTTKEIANHLFISEKTVRNHISNTMQKLGVKGRSQA 62

Query: 237 IAYAVR 242
           +   +R
Sbjct: 63  VIELIR 68


>gi|152965549|ref|YP_001361333.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360066|gb|ABS03069.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 200

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+      G D  L+ RE+E L  +++G+++ +    LG+S  TV +++A I RK  T  
Sbjct: 127 FEGRGGENGVD-SLSEREIEVLQHVADGRSNKDTGAALGLSALTVKSHLARIARKLGTGD 185

Query: 233 RSGAIAYAVRNNIV 246
           R+  +A  +R  ++
Sbjct: 186 RAEMVAITLRAGVI 199


>gi|325204234|gb|ADY99687.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240355]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|320329504|gb|EFW85496.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330889863|gb|EGH22524.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330986211|gb|EGH84314.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|309378607|emb|CBX22785.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|196229558|ref|ZP_03128423.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226790|gb|EDY21295.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 210

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +++ RE E L  I+ GK + EIA  LGIS  TV  + +++  K     R+ A +  +R  
Sbjct: 146 DVSDREREVLQLIARGKANKEIAAALGISEETVKRHASNLFVKMGVADRAQATSEGIRRG 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|182434678|ref|YP_001822397.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463194|dbj|BAG17714.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 232

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  ++EG +S EIA +L IS  TV  + A++++K   + R     YA+R  +
Sbjct: 170 ITEREEEILKLVAEGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGL 229

Query: 246 V 246
           +
Sbjct: 230 I 230


>gi|324324220|gb|ADY19480.1| two component LuxR family transcriptional regulator [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 154 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 213

Query: 245 I 245
           I
Sbjct: 214 I 214


>gi|260578669|ref|ZP_05846577.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603166|gb|EEW16435.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 200

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 32/62 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E    + EGK+S  IA  L +S  TV N+I+SIM KT    R  A   A  
Sbjct: 137 DNPLSERETEVCQQLFEGKSSPAIAKALHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKT 196

Query: 243 NN 244
           N 
Sbjct: 197 NG 198


>gi|271967578|ref|YP_003341774.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510753|gb|ACZ89031.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + +  ++ G T+ EIA  L +S  TV N+IAS+  KT T+ R    A+A
Sbjct: 147 LTEREDQIVAMVAHGMTNAEIAAELFLSPGTVKNHIASVQNKTGTRNRVAIAAWA 201


>gi|332668711|ref|YP_004451718.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332337748|gb|AEE44331.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  +++G  + EIA  L  S  TV N +  +  +   + RS A+AYA+R  +
Sbjct: 147 LASREIEVLKLVADGYDTAEIAQHLSYSERTVKNVLHDVTTRLQLRNRSHAVAYALREGL 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|330720547|gb|EGG98827.1| two component transcriptional regulator2C LuxR family protein
           [gamma proteobacterium IMCC2047]
          Length = 151

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 2/106 (1%)

Query: 143 GLMLLFPKGRII--LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           G+  LF KG  +  +R++L  I     Y A+ F        +   LT RE++ L  I  G
Sbjct: 41  GVEGLFSKGSPVDQMREKLPLISQGGRYVASEFLELIQQGQQVSALTDRELQVLNMIVAG 100

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K + EIA  L IS  TV+ +  S+M K    + +  +A A+++ ++
Sbjct: 101 KINKEIAEALFISPKTVDKHRTSLMSKLEVHSVAQLLARALKDGLI 146


>gi|329940703|ref|ZP_08289983.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329299997|gb|EGG43895.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +A
Sbjct: 147 GRAGTLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWA 206

Query: 241 VRNNI 245
           VR+ +
Sbjct: 207 VRHGV 211


>gi|325142479|gb|EGC64883.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           961-5945]
 gi|325198384|gb|ADY93840.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           G2136]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|325134502|gb|EGC57147.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M13399]
 gi|325205973|gb|ADZ01426.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M04-240196]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|316985109|gb|EFV64062.1| transcriptional regulatory protein degU [Neisseria meningitidis
           H44/76]
 gi|325200119|gb|ADY95574.1| transcriptional regulatory protein degU [Neisseria meningitidis
           H44/76]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|333026198|ref|ZP_08454262.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746050|gb|EGJ76491.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 205

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE + L  +S+G  + +IA  L IS  TV  ++  + +K    TR+GA+A A
Sbjct: 143 ELTPRERDILAQLSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVA 198


>gi|326332686|ref|ZP_08198949.1| putative transcriptional regulatory protein DegU [Nocardioidaceae
           bacterium Broad-1]
 gi|325949514|gb|EGD41591.1| putative transcriptional regulatory protein DegU [Nocardioidaceae
           bacterium Broad-1]
          Length = 219

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT REVE L  I++G ++ +IA  L +S NT+ ++I    RK    TRS A+++A+ + 
Sbjct: 131 LTTREVEVLALITQGLSNADIAEKLVVSVNTLKSHIRQAYRKIEVTTRSQAVSWAITHG 189


>gi|319410499|emb|CBY90860.1| putative two-component system transcriptional regulator protein
           [Neisseria meningitidis WUE 2594]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|309812367|ref|ZP_07706122.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
 gi|308433672|gb|EFP57549.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
          Length = 237

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G  S +IA  LG+S  TV+N++A+ +RK     R     +A+ N +
Sbjct: 177 LTPRESEVLRMVAKGLASKQIASRLGLSSRTVDNHVAATLRKLHLANRVELTRFALENGL 236


>gi|282862559|ref|ZP_06271620.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562245|gb|EFB67786.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 225

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 178 VHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           V  G D     +T RE E L  ++EG +S EIA +L IS  TV  + A++++K   + R 
Sbjct: 152 VREGGDVPARAITEREEEILKLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRL 211

Query: 235 GAIAYAVRNNIV 246
               YA+R  ++
Sbjct: 212 ELTRYAIRAGLI 223


>gi|262374576|ref|ZP_06067850.1| nitrate/nitrite response regulator [Acinetobacter junii SH205]
 gi|262310572|gb|EEY91662.1| nitrate/nitrite response regulator [Acinetobacter junii SH205]
          Length = 219

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           RIILR  L     LA   A + ++  +       LT RE++ +  ISEG ++  IA  L 
Sbjct: 126 RIILRGELVISPSLAPILAQILRTPSIE-DISSNLTSRELQVIQMISEGLSNKMIAHKLS 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           I+ +TV  ++  I+ KT  +TR  A  + V +
Sbjct: 185 ITESTVKVHVKHILNKTGLRTRVEAAVWTVNH 216


>gi|258650732|ref|YP_003199888.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553957|gb|ACV76899.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 214

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELTGRE++ L  +++G+++ EIA  L ++  TV  ++A I+ K   + R  A+  A R  
Sbjct: 151 ELTGRELDVLRCLADGRSNAEIAGELFLAETTVKTHVARILAKLGVRDRVQAVVIAHRCG 210

Query: 245 I 245
           +
Sbjct: 211 L 211


>gi|227891992|ref|ZP_04009797.1| two-component response regulator [Lactobacillus salivarius ATCC
           11741]
 gi|227866196|gb|EEJ73617.1| two-component response regulator [Lactobacillus salivarius ATCC
           11741]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  +    ++ E+A    +S  T+ NYI+SI+ KT T++R  A+  A +
Sbjct: 138 DNPLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEK 197

Query: 243 NN 244
            N
Sbjct: 198 RN 199


>gi|271962124|ref|YP_003336320.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505299|gb|ACZ83577.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  +++G+ ++EIA IL +S  TV N++++I  K     R+ AI  A
Sbjct: 149 ELTEREREVLELVAQGRGNNEIAGILFLSGKTVRNHVSNIFMKLQVADRAQAIVRA 204


>gi|239978584|ref|ZP_04701108.1| two-component response regulator [Streptomyces albus J1074]
 gi|291450480|ref|ZP_06589870.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353429|gb|EFE80331.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLNKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|239932122|ref|ZP_04689075.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440492|ref|ZP_06579882.1| two component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291343387|gb|EFE70343.1| two component response regulator [Streptomyces ghanaensis ATCC
           14672]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +A
Sbjct: 147 GRAGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 206

Query: 241 VRNNI 245
           VR+ +
Sbjct: 207 VRHGL 211


>gi|261405324|ref|YP_003241565.1| LuxR family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|315645684|ref|ZP_07898808.1| transcriptional regulator, LuxR family protein [Paenibacillus
           vortex V453]
 gi|261281787|gb|ACX63758.1| transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10]
 gi|315279162|gb|EFU42472.1| transcriptional regulator, LuxR family protein [Paenibacillus
           vortex V453]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A+   ++
Sbjct: 10  FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIK 68


>gi|91779483|ref|YP_554691.1| LuxR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692143|gb|ABE35341.1| transcriptional regulator, LuxR family [Burkholderia xenovorans
           LB400]
          Length = 234

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  
Sbjct: 170 KLTPRERECLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLG 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|332974494|gb|EGK11416.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 224

 Score = 42.4 bits (98), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  + + KT+ +IA IL I   TV  ++++I+ K   + R+ A  YAV++ 
Sbjct: 148 DLTIREGEVLRLLGQAKTNQQIADILMIGIKTVKTHVSNILSKLGLEDRTQAAVYAVKHG 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|226227636|ref|YP_002761742.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090827|dbj|BAH39272.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 223

 Score = 42.4 bits (98), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G T+  IA  LGISR TV  +  S+MRK    + +G   +A+   I
Sbjct: 160 LTPRERDVLAGVARGLTNKAIAAELGISRRTVEAHRESLMRKLQIHSVAGLTRFALETGI 219

Query: 246 V 246
           +
Sbjct: 220 I 220


>gi|223934800|ref|ZP_03626720.1| transcriptional regulator, LuxR family [bacterium Ellin514]
 gi|223896755|gb|EEF63196.1| transcriptional regulator, LuxR family [bacterium Ellin514]
          Length = 122

 Score = 42.4 bits (98), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+    H  +  EL+ RE E L  ++ G    EIA  L IS  TVN YI  +  K   ++
Sbjct: 41  FQQTRPHASEADELSNREQEVLDLLARGYLYKEIAENLNISVATVNTYIRRVYEKLHVRS 100

Query: 233 RSGAIAYAVR 242
           R+ A+A   R
Sbjct: 101 RAQAVAKYTR 110


>gi|77408114|ref|ZP_00784861.1| response regulator [Streptococcus agalactiae COH1]
 gi|77173298|gb|EAO76420.1| response regulator [Streptococcus agalactiae COH1]
          Length = 196

 Score = 42.4 bits (98), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A
Sbjct: 136 LSKQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190


>gi|319892925|ref|YP_004149800.1| Two component transcriptional regulator VraR [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162621|gb|ADV06164.1| Two component transcriptional regulator VraR [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464027|gb|ADX76180.1| two-component response regulator VraR [Staphylococcus
           pseudintermedius ED99]
          Length = 209

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  IS+G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++ +
Sbjct: 148 LTEREMEILLLISKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|312880693|ref|ZP_07740493.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
 gi|310783984|gb|EFQ24382.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
          Length = 211

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ RE E L   ++G +S EIA  L IS  TV  ++ASI  K   K ++ A+  A+R  +
Sbjct: 144 ISPREREVLVQAAQGLSSKEIAAKLYISERTVQTHLASIYDKVGAKNKTEAMLLALRYGL 203

Query: 246 V 246
           V
Sbjct: 204 V 204


>gi|258647693|ref|ZP_05735162.1| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
 gi|260852526|gb|EEX72395.1| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
          Length = 315

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K+ EL+ RE + +  I +G ++ EIA  L IS NTV  +  +I RK    T +G   YA
Sbjct: 243 NKEEELSARERDVIISIVQGMSNKEIAEHLCISTNTVITHRRNIARKLQIHTPAGLTIYA 302

Query: 241 VRNNIV 246
           + N +V
Sbjct: 303 IVNGLV 308


>gi|256389326|ref|YP_003110890.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256355552|gb|ACU69049.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 233

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E   L  I+EG T+ +I   L ++  TV NYI  I+ K A + R+ A A+AVR+
Sbjct: 170 LTVSEKRILELIAEGLTNRQIGERLNLAEKTVKNYITGILAKLAMQRRTQAAAFAVRH 227


>gi|228912956|ref|ZP_04076601.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228983471|ref|ZP_04143682.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229119881|ref|ZP_04249141.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201]
 gi|228663628|gb|EEL19208.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201]
 gi|228776261|gb|EEM24616.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228846694|gb|EEM91701.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 214

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 150 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209

Query: 245 I 245
           I
Sbjct: 210 I 210


>gi|229168156|ref|ZP_04295884.1| Response regulator receiver [Bacillus cereus AH621]
 gi|228615400|gb|EEK72497.1| Response regulator receiver [Bacillus cereus AH621]
          Length = 596

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK++ LT RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A
Sbjct: 530 GKEYGLTKRELEVLNLLSQGIRYKTIASKLYLSNGTVRNYASTLYDKLEVKNREEAVKKA 589


>gi|89897364|ref|YP_520851.1| hypothetical protein DSY4618 [Desulfitobacterium hafniense Y51]
 gi|89336812|dbj|BAE86407.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 212

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 8/97 (8%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +GR  L   + +I ++ AY+     +Y+        LT RE E L  +++G T++EIA I
Sbjct: 122 QGRSFLDPEIADI-VVNAYRQGNEDAYET-------LTEREREILILLAKGHTNNEIAPI 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV+ + +++M+K +  ++     YA++  ++
Sbjct: 174 LNISSKTVDYHRSNLMKKLSLHSKVELTKYALKRGLI 210


>gi|222151813|ref|YP_002560973.1| two-component response regulator [Macrococcus caseolyticus
           JCSC5402]
 gi|222120942|dbj|BAH18277.1| two-component response regulator [Macrococcus caseolyticus
           JCSC5402]
          Length = 210

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +SEG T+ EIA  L +S  TV  +++ I  K     R+ A  Y V+  +
Sbjct: 149 LSKRELEVLKAMSEGLTNKEIAEKLFVSEKTVKTHVSHIFAKLEVGDRTQASMYGVKYKL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|297582619|ref|YP_003698399.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297141076|gb|ADH97833.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 208

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  + EGK++ EIA  L I+  TV  +++ I+ K   + R+ A  YA ++ +
Sbjct: 146 LTKREREVLALLGEGKSNQEIADTLFIAVKTVKTHVSHILAKLDLQDRTQAAIYANKHQL 205


>gi|72162890|ref|YP_290547.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916622|gb|AAZ56524.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R+ A  YA+R  
Sbjct: 167 LTERETEVLRLVARGLNNRDIADRLYISDNTVKNHVRNILEKLQLHSRTEAAVYAIREK 225


>gi|71736138|ref|YP_274051.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556691|gb|AAZ35902.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|163848766|ref|YP_001636810.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526715|ref|YP_002571186.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163670055|gb|ABY36421.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450594|gb|ACM54860.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++G ++ EIA  L +S  TV  +I++I+ K     R+    YA+R  
Sbjct: 151 QLTPREMDVLRLVAKGMSNKEIAETLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKR 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|327440878|dbj|BAK17243.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + EIA  L I+  TV  ++++I+ K   + R+ A+ YA +N +
Sbjct: 148 LTDREMEVLLCMARGLANQEIAEELFIALKTVKTHVSNILSKLEVQDRTQAVVYAFQNGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|319951571|ref|ZP_08025372.1| regulatory protein, LuxR [Dietzia cinnamea P4]
 gi|319434774|gb|EFV90093.1| regulatory protein, LuxR [Dietzia cinnamea P4]
          Length = 205

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE E ++ I +G ++++IA    +S NTV  Y+ S  RK    TR+ A+A+ +
Sbjct: 138 KEAGLSHREAEVVSLIVQGLSNEQIAEQCYLSLNTVKTYVRSAYRKMDVATRAQAVAWGI 197

Query: 242 RNNI 245
            N +
Sbjct: 198 GNGL 201


>gi|322436726|ref|YP_004218938.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321164453|gb|ADW70158.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE++ L  I +G+ + +IA  L I+  TVN +I +I +K     R+ A+  A+R
Sbjct: 144 DEKLTDRELDVLKLIRDGRRNKQIASDLKIAEATVNFHIKNISQKLQANDRTHAVMIALR 203

Query: 243 NNIV 246
             ++
Sbjct: 204 RGLL 207


>gi|325675648|ref|ZP_08155332.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|325553619|gb|EGD23297.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 222

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T RE+E L  ++ G ++ EIA    +S  TV  ++  ++ KT ++ R  A+ YA +  
Sbjct: 152 DMTPREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|282865409|ref|ZP_06274461.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282559882|gb|EFB65432.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 203

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   ++G T+ EIA  + +S  TV NY+++ ++KTA + R+ A+  A
Sbjct: 143 LTDREREVLRAAADGATNVEIAGAMHLSPGTVRNYLSTAIQKTAARNRTEAVRVA 197


>gi|269926246|ref|YP_003322869.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789906|gb|ACZ42047.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EG +  EIA    I+ +T + +  +I+RK  T +R  A+ +A+R+ 
Sbjct: 151 QLTDREREILQAIAEGLSDKEIAARFNITVDTAHKHANNILRKLDTNSRLQAVLFALRHG 210

Query: 245 IV 246
            +
Sbjct: 211 AI 212


>gi|38233071|ref|NP_938838.1| response regulator [Corynebacterium diphtheriae NCTC 13129]
 gi|5639947|gb|AAD45905.1|AF161328_2 response regulator CstA [Corynebacterium diphtheriae]
 gi|38199330|emb|CAE48963.1| Response regulator [Corynebacterium diphtheriae]
          Length = 233

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D++ G    LT RE E L  I+ GK++ EIA  L IS  TV  +++ ++ KT ++ R  A
Sbjct: 153 DINAGLIDPLTPREQEILLLIALGKSNTEIAEELFISLPTVKTHVSKVLSKTGSRDRVHA 212

Query: 237 IAYAVRNNIV 246
           + +A    +V
Sbjct: 213 VLFAFSRGLV 222


>gi|116626901|ref|YP_829057.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230063|gb|ABJ88772.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 224

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EGK+  EIA    +S  TV  +  ++MRK     ++  + YA++  I
Sbjct: 156 LTKREREILKMLAEGKSVKEIAAFFELSVKTVEAHKFNLMRKLDIHNKAQLVQYAIQKKI 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|315181312|gb|ADT88226.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC
           11218]
          Length = 216

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y  ++F+ +  H     ELT RE++ L  +  G ++ ++A  L IS  TV +++  I
Sbjct: 137 LLHYYRHIFQHH--HTQATIELTTRELQILRSLQTGASNMQMAESLFISEFTVKSHLYQI 194

Query: 225 MRKTATKTRSGAIAYAVRN 243
            +K + K R+ AI +A +N
Sbjct: 195 FKKLSVKNRTQAITWANQN 213


>gi|297161877|gb|ADI11589.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 223

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  +++G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTEREVEVLKLVAKGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|282899592|ref|ZP_06307556.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195471|gb|EFA70404.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis
           raciborskii CS-505]
          Length = 97

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   + +A++
Sbjct: 12  LSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRWALQ 68


>gi|228925473|ref|ZP_04088567.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944022|ref|ZP_04106406.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815693|gb|EEM61930.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228834218|gb|EEM79761.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 150 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209

Query: 245 I 245
           I
Sbjct: 210 I 210


>gi|170781840|ref|YP_001710172.1| LuxR family transcriptional regulator [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156408|emb|CAQ01556.1| putative LuxR-family transcriptional regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 460

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE E L  ++ G  +  IA  LGIS NTV  ++A+++RK    TR+
Sbjct: 404 LSAREREVLALVAGGSRNRAIATSLGISENTVKFHVANLLRKMGASTRA 452


>gi|325673773|ref|ZP_08153464.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325555794|gb|EGD25465.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   ELT +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   A
Sbjct: 135 GAPGELTAQERRLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLEKLGVERRAQAAVLA 194

Query: 241 VRNNI 245
            R+ +
Sbjct: 195 ARSGL 199


>gi|288555019|ref|YP_003426954.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288546179|gb|ADC50062.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 199

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+ +     LT RE + +  I+EGK+++EIA  L ++  TV NYI+ I+ K     R  A
Sbjct: 129 DLAYDNKNPLTNREKQVMELIAEGKSTNEIASELYLTNGTVRNYISVILDKLDVGNRIEA 188

Query: 237 IA 238
           I+
Sbjct: 189 IS 190


>gi|228997307|ref|ZP_04156929.1| Response regulator receiver [Bacillus mycoides Rock3-17]
 gi|229004932|ref|ZP_04162659.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228756280|gb|EEM05598.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228762399|gb|EEM11324.1| Response regulator receiver [Bacillus mycoides Rock3-17]
          Length = 578

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 172 MFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +FK Y     K  +ELT RE++ L  + EG    EIA  L +S  TV NY +SI  K   
Sbjct: 503 LFKEYSPMPKKPPYELTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQV 562

Query: 231 KTRSGAIAYAV 241
             R  A+  A+
Sbjct: 563 SGRGEAVKKAL 573


>gi|284032378|ref|YP_003382309.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811671|gb|ADB33510.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 215

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE++ +  ++ G+T+ EI+  L IS +TV +++AS+ RK A + R+
Sbjct: 154 LTDRELDAVKAVARGRTNAEISAELMISLSTVKSHLASVQRKIAARNRT 202


>gi|121634943|ref|YP_975188.1| putative two-component system response regulator [Neisseria
           meningitidis FAM18]
 gi|254805030|ref|YP_003083251.1| putative two-component system response regulator [Neisseria
           meningitidis alpha14]
 gi|304387489|ref|ZP_07369678.1| nitrate/nitrite response regulator protein NarL [Neisseria
           meningitidis ATCC 13091]
 gi|120866649|emb|CAM10400.1| putative two-component system response regulator [Neisseria
           meningitidis FAM18]
 gi|254668572|emb|CBA06069.1| putative two-component system response regulator [Neisseria
           meningitidis alpha14]
 gi|254670104|emb|CBA05041.1| putative two-component system response regulator [Neisseria
           meningitidis alpha153]
 gi|304338376|gb|EFM04497.1| nitrate/nitrite response regulator protein NarL [Neisseria
           meningitidis ATCC 13091]
 gi|325132566|gb|EGC55259.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M6190]
 gi|325138339|gb|EGC60908.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           ES14902]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|51894355|ref|YP_077046.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858044|dbj|BAD42202.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 203

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE+E L  ++ G T+ EIA+ L +S  TV  Y   I  K    TRS  + YA+
Sbjct: 139 KSVPLSPRELEVLRLVALGHTNQEIALQLNVSVRTVETYKTRICEKLGVYTRSEMVRYAL 198

Query: 242 RNNI 245
            + +
Sbjct: 199 EHKL 202


>gi|310822246|ref|YP_003954604.1| LuxR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395318|gb|ADO72777.1| Transcriptional regulator, LuxR family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 394

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + LT R+ + LT   +GKT+ EIA+ LG  ++TV  +++ I+RK     RS
Sbjct: 334 WALTARQADVLTLAVQGKTNKEIALELGCQKSTVELHMSHILRKCGADNRS 384


>gi|238749708|ref|ZP_04611213.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380]
 gi|238712363|gb|EEQ04576.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380]
          Length = 244

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + RE E L W S GKT  EI++IL I R+TV  +I +++RK        AI   +
Sbjct: 181 FSPRENEILYWASVGKTYSEISIILEIKRSTVKFHIGNVVRKLGVLNAKHAIRLGI 236


>gi|238653897|emb|CAV30841.1| Transcriptional Regulator, LuxR family [magnetite-containing
           magnetic vibrio]
          Length = 261

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E + L+  ++G  + +IA  LG+S   V+ +IA    K A+ TR+ A+A A+R +I
Sbjct: 199 LTEKEKQALSLTAKGLKTKQIADKLGMSDKAVDQHIARATAKLASTTRTQAVAEAIRLHI 258

Query: 246 V 246
           +
Sbjct: 259 L 259


>gi|160885020|ref|ZP_02066023.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483]
 gi|156109370|gb|EDO11115.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483]
          Length = 200

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV N  
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|124024939|ref|YP_001014055.1| LuxR family regulatory protein [Prochlorococcus marinus str.
           NATL1A]
 gi|123960007|gb|ABM74790.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. NATL1A]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 38/56 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+
Sbjct: 14  LSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKNRVALLNWAM 69


>gi|325202056|gb|ADY97510.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240149]
 gi|325208190|gb|ADZ03642.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           NZ-05/33]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|297563008|ref|YP_003681982.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847456|gb|ADH69476.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 241

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ++    + EI   L I+ NTV N++  I+ K    +R+ A  YAVR  
Sbjct: 177 ELTRRETEVLKLLARSLNNREIGERLFITENTVKNHVRKILEKLQVHSRTEAAIYAVRAE 236

Query: 245 IV 246
            V
Sbjct: 237 YV 238


>gi|205374386|ref|ZP_03227184.1| spore germination protein E [Bacillus coahuilensis m4-4]
          Length = 74

 Score = 42.0 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTRREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|261405834|ref|YP_003242075.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329926559|ref|ZP_08280972.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
 gi|261282297|gb|ACX64268.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328939100|gb|EGG35463.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
          Length = 215

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L +S  TV  + A IM K   K+R   + YA++  +
Sbjct: 153 LSQREIEILPLIAKGYGNKEIAEKLFVSVKTVEAHKAKIMEKLKLKSRPELVEYALKKKL 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|89891291|ref|ZP_01202798.1| putative response regulator, luxR family [Flavobacteria bacterium
           BBFL7]
 gi|89516603|gb|EAS19263.1| putative response regulator, luxR family [Flavobacteria bacterium
           BBFL7]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I E  T+ EIA  L +S+ TV+ +  +++ KT  +  +G +AYA++N I
Sbjct: 154 LSPRELDVLQLICEQFTTAEIADKLCVSKRTVDGHRNNLLIKTKMRNVAGLVAYAIQNAI 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|219849670|ref|YP_002464103.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543929|gb|ACL25667.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 216

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L  I+ GK++ EIA  L IS  TV N+++S++ K   + R+ AI  A
Sbjct: 155 LTEREMDVLHGIAAGKSNREIADQLCISEGTVKNHVSSLLAKLDVRDRTQAIIRA 209


>gi|21243715|ref|NP_643297.1| AhyR/AsaR family transcriptional regulator [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21109298|gb|AAM37833.1| transcriptional regulator ahyR/asaR family [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 254

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+A
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVA 244


>gi|116626924|ref|YP_829080.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230086|gb|ABJ88795.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 230

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E  +++  G  + +IA +L IS  TV+ Y AS+MRK       G + +A+  N+
Sbjct: 158 LSPREMEVFSYLVNGLRAKDIADLLEISPKTVDTYRASLMRKLNVHDLVGLVKFAIERNL 217


>gi|302344447|ref|YP_003808976.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301641060|gb|ADK86382.1| transcriptional regulator, LuxR family [Desulfarculus baarsii DSM
           2075]
          Length = 221

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+GRE+E L  ++ G T++EIA  L IS +TV  ++ +I  K     R+ A   A R
Sbjct: 161 LSGREMEVLRLVASGMTNNEIARALCISPHTVKTHVGNIFNKLGVNDRAMAAVTAAR 217


>gi|300932450|ref|ZP_07147706.1| LuxR family transcriptional regulator [Corynebacterium resistens
           DSM 45100]
          Length = 282

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 220 KLSARELDVLACVALGHTNVEAAAEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 277


>gi|288733198|emb|CBI71275.1| UnaR protein [Burkholderia unamae]
          Length = 234

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  
Sbjct: 170 KLTPREKECLKWTALGKSTWEISHILNCSEAVVNFHMKNIRGKFGVNSRRAAAVIATQMG 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|282898244|ref|ZP_06306235.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9]
 gi|281196775|gb|EFA71680.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9]
          Length = 97

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   + +A++
Sbjct: 12  LSDREMQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRWALQ 68


>gi|171909840|ref|ZP_02925310.1| NarL subfamily protein [Verrucomicrobium spinosum DSM 4136]
          Length = 216

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G+++ EIA  L IS  TV  ++ S+  K    +R+ AIA A R  +
Sbjct: 154 LTRREQEVLELLARGRSNKEIASTLSISEPTVKTHLRSLFGKLDVLSRTEAIAVASRKGL 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|121663597|emb|CAM12356.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae]
          Length = 349

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT RE E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+ 
Sbjct: 175 SLTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVG 228


>gi|325859996|ref|ZP_08173123.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|325482522|gb|EGC85528.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           CRIS 18C-A]
          Length = 336

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 269 LSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 328

Query: 246 V 246
           V
Sbjct: 329 V 329


>gi|301301409|ref|ZP_07207547.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300850961|gb|EFK78707.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  +    ++ E+A    +S  T+ NYI+SI+ KT T++R  A+  A +
Sbjct: 138 DNPLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEK 197

Query: 243 NN 244
            N
Sbjct: 198 RN 199


>gi|218283881|ref|ZP_03489767.1| hypothetical protein EUBIFOR_02363 [Eubacterium biforme DSM 3989]
 gi|218215544|gb|EEC89082.1| hypothetical protein EUBIFOR_02363 [Eubacterium biforme DSM 3989]
          Length = 217

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           AN    +     +DF+L+  E + +  I  G ++ EIA  LG S  T+ NY++ I+ K  
Sbjct: 141 ANSNSEFSFEHEEDFDLSDTECKIIAQIGHGYSNKEIAQKLGFSEGTIRNYLSVILDKLD 200

Query: 230 TKTRSG-AIAYAVRNN 244
            + R+  AI Y  R N
Sbjct: 201 LRDRTQLAIWYLSRGN 216


>gi|184201310|ref|YP_001855517.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581540|dbj|BAG30011.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 270

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT ++ G +++EIA  L + R TV  +++++++KT  + R  A+ +A  + +
Sbjct: 208 LTARETEVLTAMARGLSNEEIARELVVGRATVKTHVSNVLQKTGARDRVHAVIWAFEHGL 267


>gi|76667926|dbj|BAE45354.1| two component response regulater [Bacillus subtilis]
          Length = 229

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++GK++  I   L IS   V N++++I++K     R+ A+  A++N
Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKAVKNHVSNILQKINVNDRTQAVVVAIKN 223


>gi|269837299|ref|YP_003319527.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786562|gb|ACZ38705.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 219

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           FE LT RE E L  +++G +  EIA  L IS  TV  +I +I+ K    +R  A+  A R
Sbjct: 153 FEPLTDREREVLQALADGLSDKEIAERLYISPATVRTHITAILGKLDANSRLQAVVVAAR 212

Query: 243 NNIV 246
           +N+V
Sbjct: 213 HNLV 216


>gi|37223228|gb|AAQ90213.1| LuxR [Aliivibrio logei]
          Length = 232

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE ECL W  EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSVRTVTFHLTNAQMKLNTTNR 232


>gi|319795269|ref|YP_004156909.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597732|gb|ADU38798.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 228

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E LT +  G++S +IA  LG+S  TV  +  SI R+   + ++  I YAV +
Sbjct: 164 LTPRESEILTALGRGESSKQIARDLGLSVRTVEAHRQSIKRRLGIEGQAELIKYAVEH 221


>gi|260642682|ref|ZP_05859490.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           finegoldii DSM 17565]
 gi|260621023|gb|EEX43894.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           finegoldii DSM 17565]
          Length = 200

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV N  
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|297198721|ref|ZP_06916118.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197715398|gb|EDY59432.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +A
Sbjct: 147 GRGGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 206

Query: 241 VRNNI 245
           VR+ +
Sbjct: 207 VRHGL 211


>gi|111224287|ref|YP_715081.1| LuxR family transcriptional regulator [Frankia alni ACN14a]
 gi|111151819|emb|CAJ63539.1| Putative LuxR-family transcriptional regulator [Frankia alni
           ACN14a]
          Length = 349

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +   G    LT RE+E L  ++ G ++ E A  L +S  TV  Y+ SIMRK   + R+ A
Sbjct: 279 EAKVGGRLALTPRELEVLAQVALGLSNVETARRLTVSPETVKAYLRSIMRKLGVRNRTAA 338

Query: 237 IAYA 240
           +  A
Sbjct: 339 VHAA 342


>gi|78063527|ref|YP_373435.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971412|gb|ABB12791.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 514

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           P  +  R C L    D++  +   M L       ++D  W    L    AN+ ++     
Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +
Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484

Query: 240 AVRNNIV 246
           A    IV
Sbjct: 485 ARERGIV 491


>gi|83952281|ref|ZP_00961013.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM]
 gi|83837287|gb|EAP76584.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM]
          Length = 219

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE E L  + +G T+ +I+  LG+S NTV  Y+ +I +K    +R GAIA
Sbjct: 160 LSRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLGVNSRGGAIA 212


>gi|312140713|ref|YP_004008049.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311890052|emb|CBH49370.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 222

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T RE+E L  ++ G ++ EIA    +S  TV  ++  ++ KT ++ R  A+ YA +  
Sbjct: 152 DMTPREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|256376857|ref|YP_003100517.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921160|gb|ACU36671.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 227

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G ++ EIA  L +   TV  +++ ++ K   + R+ A+ YA  + 
Sbjct: 161 DLTDREYEVLVHLARGSSNAEIAARLHLGETTVKTHVSRVLAKLGLRDRTHAVVYAYEHG 220

Query: 245 IV 246
           +V
Sbjct: 221 VV 222


>gi|237803694|ref|ZP_04591279.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331025676|gb|EGI05732.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 81

 Score = 42.0 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G+   L  RE+E + ++++G TS EI  + G+S N V   ++S M K     R+  +A
Sbjct: 13  HLGRG--LAPRELEFVLYVAQGLTSKEIGKVAGLSSNGVEKRLSSAMFKLKVTRRTAMVA 70

Query: 239 YAVRNNIV 246
            A++  I+
Sbjct: 71  QAIKLQII 78


>gi|194364877|ref|YP_002027487.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347681|gb|ACF50804.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 179 HWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           H   DF        LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   +
Sbjct: 139 HMRNDFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVR 198

Query: 232 TRSGAIAYA 240
            R+ A+  A
Sbjct: 199 DRTRAVLKA 207


>gi|29829674|ref|NP_824308.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606783|dbj|BAC70843.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 204

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 34/52 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+
Sbjct: 144 LTDREREVLRAAADGATNAELATALHLSQGTVRNYLSTAIQKLAVRNRTEAV 195


>gi|116626537|ref|YP_828693.1| LuxR family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229699|gb|ABJ88408.1| transcriptional regulator, LuxR family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 190

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +LTGRE ECL   +EG + +E+A  LGI   TV   +A + RK
Sbjct: 117 DLTGREFECLLLRAEGLSYEEMATALGIRSGTVGALLARVRRK 159


>gi|304406021|ref|ZP_07387679.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345264|gb|EFM11100.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +G++  LT RE   L  I++GK++ EI+  L I+  T+ NYI+ I+ K     R  A
Sbjct: 131 DEAYGEENPLTEREKAVLVLIADGKSTKEISKELFITTGTIRNYISVILNKLGVGNRVEA 190

Query: 237 I 237
           I
Sbjct: 191 I 191


>gi|300863692|ref|ZP_07108626.1| Two component transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
 gi|300338324|emb|CBN53772.1| Two component transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
          Length = 224

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT RE + L  +++G ++ +I   L +S  TV  Y++S++RK+    R+  + +A+
Sbjct: 159 KSLSLTQREKDVLQLLTDGLSNAQIGDRLHLSHRTVEKYVSSLLRKSDRTNRAELVRFAM 218

Query: 242 RNNIV 246
            +++V
Sbjct: 219 EHHLV 223


>gi|260773658|ref|ZP_05882574.1| DNA-binding HTH domain-containing protein [Vibrio metschnikovii CIP
           69.14]
 gi|260612797|gb|EEX38000.1| DNA-binding HTH domain-containing protein [Vibrio metschnikovii CIP
           69.14]
          Length = 216

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++ H     +LT RE++ L  +    ++D+IA  L IS  TV +++  I +K A K R+ 
Sbjct: 146 HEQHTKATLDLTVREIQILRCLQAQASNDDIAKNLFISELTVKSHLYQIYKKLAVKNRAQ 205

Query: 236 AIAYA 240
           AI++A
Sbjct: 206 AISWA 210


>gi|288572798|ref|ZP_06391155.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568539|gb|EFC90096.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 217

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W+++G ++ EI+  + +S  TV N+++ I++K   + R+ A   A R  
Sbjct: 151 DLTDREKEVLFWLAQGLSNLEISAKMNLSEKTVKNHVSHILKKLDLRDRTQAAILAWRVG 210

Query: 245 IV 246
           I 
Sbjct: 211 IA 212


>gi|269125895|ref|YP_003299265.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310853|gb|ACY97227.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 163 GLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           G +AA  A + +     W G    LT RE E L+ +  G ++  +A  L +S  T+ +++
Sbjct: 135 GRMAASAARLNRGE--FWPGAHRGLTQRESEVLSLLVAGLSNKAMAARLVVSEETIKSHL 192

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
            ++ RK     RSGAIA A+R  +
Sbjct: 193 RALYRKLEVTDRSGAIAVALREGL 216


>gi|224476942|ref|YP_002634548.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421549|emb|CAL28363.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 205

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+ G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++++
Sbjct: 144 LTDREMEILLLIANGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDL 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|330809309|ref|YP_004353771.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377417|gb|AEA68767.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 165

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT R+ + L  I+ GKT+ EIA  LGIS  TV  +++S+++     TR+ A A
Sbjct: 95  QLTARQRQVLGLIAAGKTNKEIARDLGISPFTVRIHVSSLLKSLGVPTRAAAAA 148


>gi|325130303|gb|EGC53070.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           OX99.30304]
 gi|325136264|gb|EGC58872.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M0579]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|296447677|ref|ZP_06889595.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
 gi|296254818|gb|EFH01927.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
          Length = 233

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G T  E+A  L ISR TV  +I ++ RK  +  RS A+  A R  +
Sbjct: 171 LTPREMDILHGIAKGLTYAELATHLQISRQTVPAHIKNVYRKLQSNNRSEAVYEASRRGL 230

Query: 246 V 246
           +
Sbjct: 231 I 231


>gi|295838096|ref|ZP_06825029.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|295826844|gb|EFG65089.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 219

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE + L  +S+G  + +IA  L IS  TV  ++  + +K    TR+GA+A A
Sbjct: 157 ELTPRERDILAQLSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVA 212


>gi|294631223|ref|ZP_06709783.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292834556|gb|EFF92905.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 204

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A
Sbjct: 144 LTDREREVLRAAADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRTA 198


>gi|254295070|ref|YP_003061093.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043601|gb|ACT60396.1| two component transcriptional regulator, LuxR family [Hirschia
           baltica ATCC 49814]
          Length = 302

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + F LT RE E L W+S GK +  I+ ILGIS  T+N ++  +  K   +
Sbjct: 238 QQFNLTQREAEVLLWVSFGKPNRVISEILGISPRTINKHLEHVFEKMGVE 287


>gi|241764600|ref|ZP_04762616.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241365963|gb|EER60589.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 263

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+ +A
Sbjct: 203 LSAREKEILRMVASGYTSTEIGSRLLISCMTVNTHIRNIYRKLQVRTRAQAVRFA 257


>gi|229171060|ref|ZP_04298658.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3]
 gi|228612390|gb|EEK69614.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR
Sbjct: 149 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVR 206


>gi|332521837|ref|ZP_08398286.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
 gi|332042509|gb|EGI78711.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
          Length = 453

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           L+ RE E L  IS GKT+ EIA+ L IS NTV  ++ +I  K   K+R
Sbjct: 392 LSFRETEILQLISLGKTNKEIALELHISENTVKYHVKNIYTKLNIKSR 439


>gi|325262648|ref|ZP_08129385.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032480|gb|EGB93758.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +E+  RE+E +  I++G ++ EIA  L +S  TV NY++SI+ K   + R+
Sbjct: 146 YEINDRELEIIRLIADGLSNKEIASTLFLSEGTVRNYLSSILDKLELRDRT 196


>gi|237797654|ref|ZP_04586115.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020504|gb|EGI00561.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 240

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIREVSESTVKFHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|158334639|ref|YP_001515811.1| two-component response regulator [Acaryochloris marina MBIC11017]
 gi|158304880|gb|ABW26497.1| two-component response regulator [Acaryochloris marina MBIC11017]
          Length = 222

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ISEG ++ EIA  L +S  T+ +Y+  I+ K +   R  A A AVR  +
Sbjct: 162 LSDREREVLQLISEGCSNQEIANQLYLSLGTIKSYVRMILNKLSVDDRVQAAAKAVREGL 221

Query: 246 V 246
           +
Sbjct: 222 I 222


>gi|146302391|ref|YP_001196982.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146156809|gb|ABQ07663.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 219

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +T I    +  EI+  L IS NTV  +  +IM+K   K   G + YA++NN+
Sbjct: 157 LSPREIEIVTLICLEYSGKEISEKLFISVNTVETHRKNIMKKLNIKNTIGLVKYALKNNL 216

Query: 246 V 246
           +
Sbjct: 217 I 217


>gi|300864647|ref|ZP_07109505.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300337396|emb|CBN54653.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 91

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 39/57 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N++++I+ KTAT  R   + +A++
Sbjct: 12  LSDRELQVVELVAAGLTNQEIADKLDISKRTVDNHMSNILTKTATGNRVALVRWAMQ 68


>gi|298488407|ref|ZP_07006438.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157032|gb|EFH98121.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+  G    LT R+ E L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS  
Sbjct: 138 DLDSGAISHLTVRQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRSAV 197

Query: 237 IA 238
            A
Sbjct: 198 AA 199


>gi|238064365|ref|ZP_04609074.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237886176|gb|EEP75004.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 228

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E +   ++GK++DEIA  L +S  TV  +I   M K   + R+  +  A +N 
Sbjct: 160 DLTNREREAMKLAADGKSNDEIARELNLSALTVRTHIQRAMTKLGARDRAQLVVLAYKNG 219

Query: 245 IV 246
           +V
Sbjct: 220 LV 221


>gi|153004672|ref|YP_001378997.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028245|gb|ABS26013.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++EG+++ E+A +LGIS  T  ++   +M K     R+  + +A++  +
Sbjct: 154 LTDREKQVLKLVAEGRSNKEVAEVLGISVKTAMSHREHVMEKLQVHNRTELVRFALKKGV 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|115376820|ref|ZP_01464044.1| transcriptional regulator, LuxR family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366182|gb|EAU65193.1| transcriptional regulator, LuxR family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 419

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + LT R+ + LT   +GKT+ EIA+ LG  ++TV  +++ I+RK     RS
Sbjct: 359 WALTARQADVLTLAVQGKTNKEIALELGCQKSTVELHMSHILRKCGADNRS 409


>gi|90962775|ref|YP_536690.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90821969|gb|ABE00607.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  +    ++ E+A    +S  T+ NYI+SI+ KT T++R  A+  A +
Sbjct: 138 DNPLTDREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEK 197

Query: 243 NN 244
            N
Sbjct: 198 RN 199


>gi|58583150|ref|YP_202166.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58427744|gb|AAW76781.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A
Sbjct: 154 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 208


>gi|21241983|ref|NP_641565.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107378|gb|AAM36101.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A
Sbjct: 154 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 208


>gi|47567457|ref|ZP_00238169.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|47555859|gb|EAL14198.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 154 QLTEREVDILREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 213

Query: 245 I 245
           I
Sbjct: 214 I 214


>gi|320532002|ref|ZP_08032895.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135766|gb|EFW27821.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 203

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L   ++G T  E+A  + +S  T  N+++  M KT   TR+ A+  A +
Sbjct: 138 DSPLTARETEVLQAAADGATVAEVARRVHLSEGTTRNHLSQAMAKTDAPTRAAAVHIAAQ 197

Query: 243 NN 244
             
Sbjct: 198 KG 199


>gi|294814752|ref|ZP_06773395.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294327351|gb|EFG08994.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 430

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 177 DVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           + H G    EL+ RE E +  I+ G T+ EIA    IS+ TV N+I  I  K  T +R  
Sbjct: 355 ETHGGTVLGELSRREAEVMELIAAGLTNQEIAAACFISQKTVKNHINRIFAKLNTGSRGE 414

Query: 236 AIA 238
           AIA
Sbjct: 415 AIA 417


>gi|294054035|ref|YP_003547693.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613368|gb|ADE53523.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 208

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  + EG+++ EIA ++ IS +TV  ++ +I  K     R+ A+  A +  
Sbjct: 145 ELTPRELEVLQLLGEGQSNKEIADVMDISLSTVKIHVTNIRDKLGAADRTQAVVIAFKRG 204

Query: 245 IV 246
           I+
Sbjct: 205 IL 206


>gi|168070046|ref|XP_001786672.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660742|gb|EDQ48513.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +F LT RE+E L  ++ G  + EIA  L +S  TV NYI++I  K   K R  A   A
Sbjct: 149 EFGLTAREIEVLHKLAAGLRNQEIAEALFLSEGTVKNYISTIYSKLNVKGRREATQKA 206


>gi|51891787|ref|YP_074478.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855476|dbj|BAD39634.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L  I+ G  + EIA  L IS NTV  +I+++ +K   + R+ A+  A+
Sbjct: 152 LTERETEILRLIASGAANKEIAAALFISENTVKTHISNLFQKLGARDRTEAVTKAL 207


>gi|325144605|gb|EGC66904.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240013]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|254522679|ref|ZP_05134734.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219720270|gb|EED38795.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A
Sbjct: 141 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 195


>gi|84495164|ref|ZP_00994283.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384657|gb|EAQ00537.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 219

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  I+ G ++ EIA  L ++  TV  +++ ++ K   + R+ A+ +A  + 
Sbjct: 155 ELTPRELEVLELIARGLSNVEIATRLFVAEQTVKTHVSRVLAKLGLRDRAQAVVFAYEHG 214

Query: 245 IV 246
           +V
Sbjct: 215 VV 216


>gi|307328696|ref|ZP_07607868.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306885645|gb|EFN16659.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 159

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE+  L+  ++G +  EIA  L +S  T+ NY+A+I RKT  + R  AI
Sbjct: 99  LTERELGVLSLAADGASIPEIARTLHLSTGTIRNYLAAITRKTGARNRVDAI 150


>gi|163736433|ref|ZP_02143852.1| transcriptional regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|163741032|ref|ZP_02148424.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161385385|gb|EDQ09762.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161390303|gb|EDQ14653.1| transcriptional regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 251

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT+ +IA+++G++  TV  ++       A +T + A+  A  +N
Sbjct: 186 LTKRQREALQWVGDGKTTQDIALLMGLTPATVEKHLRLAREALAVETTAHAVLKAALHN 244


>gi|158334732|ref|YP_001515904.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158304973|gb|ABW26590.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE++ L  I +GK++ EI+ IL ++  TV NY++ ++     + R+ A  +A
Sbjct: 152 LSDRELDVLNLIGQGKSNREISQILHLTEGTVKNYVSQLLGSLGVRDRTQAALWA 206


>gi|163761077|ref|ZP_02168154.1| two component transcriptional regulator, LuxR family protein
           [Hoeflea phototrophica DFL-43]
 gi|162281628|gb|EDQ31922.1| two component transcriptional regulator, LuxR family protein
           [Hoeflea phototrophica DFL-43]
          Length = 223

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +LT RE E L  +++G    EI   LGIS  TV N+I +I +K    + + AIA A R
Sbjct: 161 IDLTNRETEILNAVAKGYKRREIGEKLGISTGTVGNHINNIYQKLNVNSNTEAIARATR 219


>gi|8217387|emb|CAB92554.1| SmaR protein [Serratia sp. ATCC 39006]
          Length = 247

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E L W S GK+  EIA+ILGI   TV  ++ + ++K        AI   V 
Sbjct: 179 LSKRENEILYWASMGKSYQEIALILGIKLTTVKYHVGNAVKKLGVTNAKHAIRLGVE 235


>gi|21220150|ref|NP_625929.1| two-component response regulator [Streptomyces coelicolor A3(2)]
 gi|256788738|ref|ZP_05527169.1| two-component response regulator [Streptomyces lividans TK24]
 gi|289772632|ref|ZP_06532010.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|6119696|emb|CAB59507.1| putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289702831|gb|EFD70260.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 223

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|77463693|ref|YP_353197.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462526|ref|YP_001043640.1| autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639538|ref|YP_002525800.1| Autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332558550|ref|ZP_08412872.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N]
 gi|2360976|gb|AAC46021.1| autoinducer sythesis regulator [Rhodobacter sphaeroides]
 gi|77388111|gb|ABA79296.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126104190|gb|ABN76868.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221160319|gb|ACM01299.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides KD131]
 gi|332276262|gb|EGJ21577.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N]
          Length = 233

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L W + GK+  +I  ILGIS  TV  ++ S   K  T +   A+  A+   +
Sbjct: 170 LSTREIEVLQWAAAGKSQTDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLGL 229

Query: 246 V 246
           V
Sbjct: 230 V 230


>gi|294627058|ref|ZP_06705648.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598720|gb|EFF42867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A
Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207


>gi|9297069|sp|O87971|YUKR_YERRU RecName: Full=Transcriptional activator protein yukR
 gi|3388087|gb|AAC28702.1| response regulator YukR [Yersinia ruckeri]
          Length = 229

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE E L W S GKT  EIA+I GI+  TV +++ ++++K        AI   V
Sbjct: 164 LSPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGV 219


>gi|330501190|ref|YP_004378059.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           NK-01]
 gi|328915476|gb|AEB56307.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           NK-01]
          Length = 476

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  IS G ++ E+A  LGIS +TV  ++ S+ RK    TR+ A   A+   +
Sbjct: 416 LSERETQILQRISSGASNKEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGV 475

Query: 246 V 246
           +
Sbjct: 476 I 476


>gi|325269082|ref|ZP_08135703.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324988703|gb|EGC20665.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 318

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 251 LSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|296118869|ref|ZP_06837442.1| transcriptional regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967967|gb|EFG81219.1| transcriptional regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 294

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 232 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 289


>gi|294056650|ref|YP_003550308.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615983|gb|ADE56138.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 208

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 154 ILRDRLWEIGLLAAY-QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +L + + E+     Y  A++ ++   H  +D +L+ RE++ L  ++ G ++ ++A  L I
Sbjct: 113 LLHEAIVEVAAGGTYFPASIARTMSAHT-EDQDLSARELQVLHLVAAGSSNKDVADKLSI 171

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  ++ +IM+K +   R+  +  A+R  IV
Sbjct: 172 SLPTVKMHMTNIMKKLSVYDRTQLVIAAIRKGIV 205


>gi|282879979|ref|ZP_06288701.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS
           5C-B1]
 gi|281306093|gb|EFA98131.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS
           5C-B1]
          Length = 187

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+  E+  +  I +G + DE+A  L IS NTV N+I S+  K     +S  I YA  NN
Sbjct: 121 KLSDAELRVMKLIYQGASKDEVAEQLYISPNTVKNHIKSVYLKLGIHEKSEFIRYAESNN 180

Query: 245 I 245
           +
Sbjct: 181 L 181


>gi|290962908|ref|YP_003494090.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260652434|emb|CBG75567.1| Putative transcriptional regulator [Streptomyces scabiei 87.22]
          Length = 289

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ L+ ++ G+T+ ++A  LG+S  TV +Y+ S MR+    TR   +A A R
Sbjct: 228 LSSRELDVLSCVALGRTNADVAEELGLSAETVKSYLRSAMRRLGCHTRMETVATARR 284


>gi|261407454|ref|YP_003243695.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329927546|ref|ZP_08281731.1| putative nitrate/nitrite response regulator protein NarL
           [Paenibacillus sp. HGF5]
 gi|261283917|gb|ACX65888.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328938415|gb|EGG34804.1| putative nitrate/nitrite response regulator protein NarL
           [Paenibacillus sp. HGF5]
          Length = 219

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F  YD        LT RE E L  ++EG ++ +I+  L IS NTV N++ +I++K   + 
Sbjct: 141 FSQYDKPDPSKSPLTAREKEILGLVAEGLSNRDISSDLCISENTVKNHLKNILQKLHLEN 200

Query: 233 RSGAIAYA 240
           R     YA
Sbjct: 201 RVQLTRYA 208


>gi|56696372|ref|YP_166729.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678109|gb|AAV94775.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3]
          Length = 238

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 30/62 (48%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D   T RE E    +  G T +EI   LG S+ T+ ++IASI RK+    RS    +   
Sbjct: 174 DLGFTSREAEVSDLLVTGLTDEEICTKLGFSKPTLRSHIASIFRKSGLNRRSQLAQFLAE 233

Query: 243 NN 244
            N
Sbjct: 234 KN 235


>gi|84624990|ref|YP_452362.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166711074|ref|ZP_02242281.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188575549|ref|YP_001912478.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|289665304|ref|ZP_06486885.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|84368930|dbj|BAE70088.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188520001|gb|ACD57946.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A
Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207


>gi|327313695|ref|YP_004329132.1| hemerythrin HHE cation binding domain-containing protein
           [Prevotella denticola F0289]
 gi|326944895|gb|AEA20780.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           F0289]
          Length = 318

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 251 LSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|325914881|ref|ZP_08177216.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538972|gb|EGD10633.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A
Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207


>gi|320159841|ref|YP_004173065.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319993694|dbj|BAJ62465.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++EG T+ +IA  L IS NTV  +I  I+ K     R+ A+  A +  I
Sbjct: 152 LSDRELEVLQCLAEGLTTQQIASRLFISENTVKTHIRHILDKLEASNRTEAVGKATQLGI 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|269217550|ref|ZP_06161404.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212485|gb|EEZ78825.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 202

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L   S+G T+ +++  L +S+ TV NY++S + KT  +TR+ A+  A R+N
Sbjct: 142 LTEREQDVLRATSDGGTTADVSRSLFLSQGTVRNYLSSAIHKTGARTRAEAVVIA-RDN 199


>gi|229131218|ref|ZP_04260124.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196]
 gi|228652209|gb|EEL08140.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209

Query: 245 I 245
           +
Sbjct: 210 V 210


>gi|227506399|ref|ZP_03936448.1| regulatory family protein [Corynebacterium striatum ATCC 6940]
 gi|227197050|gb|EEI77098.1| regulatory family protein [Corynebacterium striatum ATCC 6940]
          Length = 293

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A 
Sbjct: 228 QSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAAR 287

Query: 242 R 242
           R
Sbjct: 288 R 288


>gi|153807354|ref|ZP_01960022.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185]
 gi|149129716|gb|EDM20928.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185]
          Length = 200

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV N  
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|104779522|ref|YP_606020.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95108509|emb|CAK13203.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 217

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L  I+ G+T+  IA  LG+S  TV  + + IM +       G + +AVR  I
Sbjct: 153 LTKRQLEILRLIARGETTRSIADGLGLSVKTVEAHRSQIMHRLQIHDVPGLVLFAVREGI 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|77413329|ref|ZP_00789524.1| response regulator [Streptococcus agalactiae 515]
 gi|77160643|gb|EAO71759.1| response regulator [Streptococcus agalactiae 515]
 gi|319744307|gb|EFV96671.1| LuxR family DNA-binding response regulator [Streptococcus
           agalactiae ATCC 13813]
          Length = 196

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A
Sbjct: 136 LSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190


>gi|302345391|ref|YP_003813744.1| hemerythrin HHE cation binding domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149568|gb|ADK95830.1| hemerythrin HHE cation binding domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 318

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 251 LSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|300722895|ref|YP_003712190.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
 gi|297629407|emb|CBJ90008.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
          Length = 229

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E + +I +G ++ +IA  L +S  T++N+I ++ +KT T +R   + Y   +NI
Sbjct: 151 FSKREWEIIFYIMQGYSTKDIAERLFVSYRTISNHIQNVYKKTETNSRKSLVDYCYEHNI 210

Query: 246 V 246
            
Sbjct: 211 A 211


>gi|294666925|ref|ZP_06732155.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603297|gb|EFF46718.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A
Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207


>gi|229165197|ref|ZP_04292990.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621]
 gi|228618295|gb|EEK75327.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209

Query: 245 I 245
           +
Sbjct: 210 V 210


>gi|218672306|ref|ZP_03521975.1| hypothetical protein RetlG_12042 [Rhizobium etli GR56]
          Length = 109

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+ CL    +G TS+EIA        T+N+Y+ S  +K     R+ AIA A+R  +
Sbjct: 48  LTSGELRCLELAGKGLTSEEIADASDYRTETINSYLKSATKKLGAANRAHAIAEAIRRQL 107

Query: 246 V 246
           +
Sbjct: 108 I 108


>gi|190573276|ref|YP_001971121.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190011198|emb|CAQ44808.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N F S D    +   LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   
Sbjct: 142 NEFVSLD----RPDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGV 197

Query: 231 KTRSGAIAYA 240
           + R+ A+  A
Sbjct: 198 RDRTRAVLKA 207


>gi|163745621|ref|ZP_02152981.1| transcriptional regulator, LuxR family/sensory box protein
           [Oceanibulbus indolifex HEL-45]
 gi|161382439|gb|EDQ06848.1| transcriptional regulator, LuxR family/sensory box protein
           [Oceanibulbus indolifex HEL-45]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           LT RE E L+ ++EG TS EIA+ L IS  TV  Y A +++K      SG
Sbjct: 133 LTRREREILSHLAEGLTSKEIAIKLDISHRTVEVYRAKLLKKFGVNNTSG 182


>gi|297563606|ref|YP_003682580.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848054|gb|ADH70074.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 252

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  W + F  T RE + +  ++ G ++ EIA +LG+S  T+ ++++S++ K   + R   
Sbjct: 176 DSCWKEQF--TDREKDVVALVATGASNAEIAGVLGLSETTIKSHVSSVLAKRGLRNRVQL 233

Query: 237 IAYAVRNNIV 246
           + +A R+ +V
Sbjct: 234 VVWAFRSGLV 243


>gi|302520045|ref|ZP_07272387.1| response regulatory protein [Streptomyces sp. SPB78]
 gi|318061142|ref|ZP_07979863.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318079227|ref|ZP_07986559.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|302428940|gb|EFL00756.1| response regulatory protein [Streptomyces sp. SPB78]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE + L  +S+G  + +IA  L IS  TV  ++  + +K    TR+GA+A A
Sbjct: 158 ELTPRERDILAQLSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVA 213


>gi|297195362|ref|ZP_06912760.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719268|gb|EDY63176.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|182415045|ref|YP_001820111.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842259|gb|ACB76511.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +++G ++ EIA  LG+   T+  Y+A+I  K     R+ A+  AV+  I
Sbjct: 146 LSPREMEVLKLLAKGLSNKEIATQLGLVVGTIKIYVANIFNKLGVSDRTQALVTAVKRGI 205

Query: 246 V 246
           +
Sbjct: 206 I 206


>gi|146319339|ref|YP_001199051.1| response regulator [Streptococcus suis 05ZYH33]
 gi|146321541|ref|YP_001201252.1| response regulator [Streptococcus suis 98HAH33]
 gi|253752368|ref|YP_003025509.1| response regulator protein [Streptococcus suis SC84]
 gi|253754194|ref|YP_003027335.1| response regulator protein [Streptococcus suis P1/7]
 gi|253756128|ref|YP_003029268.1| response regulator protein [Streptococcus suis BM407]
 gi|145690145|gb|ABP90651.1| Response regulator [Streptococcus suis 05ZYH33]
 gi|145692347|gb|ABP92852.1| Response regulator [Streptococcus suis 98HAH33]
 gi|251816657|emb|CAZ52298.1| response regulator protein [Streptococcus suis SC84]
 gi|251818592|emb|CAZ56426.1| response regulator protein [Streptococcus suis BM407]
 gi|251820440|emb|CAR47123.1| response regulator protein [Streptococcus suis P1/7]
 gi|319758772|gb|ADV70714.1| response regulator [Streptococcus suis JS14]
          Length = 200

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT  E + L  ++EG ++ EIA  L +S  TV NY+ SI+ K   + R+ A+  A
Sbjct: 139 LTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENRTAAVKVA 193


>gi|120406465|ref|YP_956294.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119959283|gb|ABM16288.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 219

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++G+++ EIA  L IS  TV ++I  I  K   + R+ AI YA +  
Sbjct: 154 DLTPRELDVLRLMAKGRSNSEIADELVISGVTVKSHIGRIFLKLRLRDRAAAIVYAYQKG 213

Query: 245 IV 246
           IV
Sbjct: 214 IV 215


>gi|29347818|ref|NP_811321.1| LuxR family transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298387982|ref|ZP_06997530.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 1_1_14]
 gi|29339719|gb|AAO77515.1| luxR family transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298259248|gb|EFI02124.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 1_1_14]
          Length = 200

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV N  
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|229009717|ref|ZP_04166941.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048]
 gi|228751597|gb|EEM01399.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209

Query: 245 I 245
           +
Sbjct: 210 V 210


>gi|297195179|ref|ZP_06912577.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722161|gb|EDY66069.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +A
Sbjct: 148 GRGNSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWA 207

Query: 241 VRNNI 245
           VR+ +
Sbjct: 208 VRHGM 212


>gi|189468407|ref|ZP_03017192.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM
           17393]
 gi|189436671|gb|EDV05656.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM
           17393]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H   + +L+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ +G   
Sbjct: 137 HADSEHDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVAGLTI 196

Query: 239 YAVRNNIV 246
           YAV +  V
Sbjct: 197 YAVMHGYV 204


>gi|187779968|ref|ZP_02996441.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC
           15579]
 gi|187773593|gb|EDU37395.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC
           15579]
          Length = 217

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LTGRE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +N
Sbjct: 154 YNLTGREINIIREIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213

Query: 244 NI 245
           NI
Sbjct: 214 NI 215


>gi|78046817|ref|YP_362992.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|289669198|ref|ZP_06490273.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|325927244|ref|ZP_08188501.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78035247|emb|CAJ22892.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542364|gb|EGD13849.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A
Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207


>gi|186681008|ref|YP_001864204.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463460|gb|ACC79261.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 225

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  + +G ++ EIA  L +S NT+  ++  IM K A   R  A   A+R+ +
Sbjct: 165 LSARELEVLKLMVDGLSNPEIAEKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 224

Query: 246 V 246
           V
Sbjct: 225 V 225


>gi|256617156|ref|ZP_05474002.1| salavaricin two-component system response regulator [Enterococcus
           faecalis ATCC 4200]
 gi|257087415|ref|ZP_05581776.1| salavaricin two-component system response regulator [Enterococcus
           faecalis D6]
 gi|312899812|ref|ZP_07759131.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0470]
 gi|256596683|gb|EEU15859.1| salavaricin two-component system response regulator [Enterococcus
           faecalis ATCC 4200]
 gi|256995445|gb|EEU82747.1| salavaricin two-component system response regulator [Enterococcus
           faecalis D6]
 gi|295113419|emb|CBL32056.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Enterococcus sp. 7L76]
 gi|311293062|gb|EFQ71618.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0470]
 gi|315025432|gb|EFT37364.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2137]
 gi|315166424|gb|EFU10441.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1341]
          Length = 197

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   +EG    EIA  L ISR TVNN++ SI  K    +   AI  A+   I
Sbjct: 132 LSKREKEILKCAAEGFKQQEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQAIELGI 191

Query: 246 V 246
           +
Sbjct: 192 I 192


>gi|224535141|ref|ZP_03675680.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523238|gb|EEF92343.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H   + +L+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ +G   
Sbjct: 137 HADSEHDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVAGLTI 196

Query: 239 YAVRNNIV 246
           YAV +  V
Sbjct: 197 YAVMHGYV 204


>gi|223935142|ref|ZP_03627060.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896026|gb|EEF62469.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           LRDR  E G      +N+         K   LT RE E L  I+EG+ + +IA  LGIS 
Sbjct: 135 LRDRARE-GFANGNNSNV---------KTSNLTEREAEVLQLIAEGQANKQIASELGISI 184

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  +   +M K      +G   YA+   ++
Sbjct: 185 KTVEKHRQQVMNKLNIHDVAGLTRYAISKGVI 216


>gi|328881569|emb|CCA54808.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G T+ EIA  +G+   TV  ++AS++ K+  + R+ A+  A  +  
Sbjct: 155 LTEREAEVLRLVATGLTNAEIAGRMGVGPATVKTHVASVLAKSGARDRTQAVILAYESGF 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|300789938|ref|YP_003770229.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299799452|gb|ADJ49827.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 192

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    LT REV+ L  ++EG  + EIA  L  S  TV N I ++  +   + R  A+AYA
Sbjct: 127 GGGAALTPREVDVLRLMAEGWDTAEIAGKLCYSERTVKNVIYAMTNRLNLRNRPHAVAYA 186

Query: 241 VRNNIV 246
           VR  ++
Sbjct: 187 VRAGVI 192


>gi|283853336|ref|ZP_06370584.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
 gi|283571260|gb|EFC19272.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
          Length = 225

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++EG+++  IA  L ISR TV N+ A+I  K    + +  + YAVR  +
Sbjct: 158 LTRREQQILRLLAEGRSAGAIAADLYISRKTVENHRANIFGKLGLTSMAELVHYAVRLGL 217

Query: 246 V 246
           +
Sbjct: 218 I 218


>gi|295399431|ref|ZP_06809413.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110010|ref|YP_003988326.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978897|gb|EFG54493.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215111|gb|ADP73715.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1]
          Length = 74

 Score = 42.0 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQAVIELLR 68


>gi|222150392|ref|YP_002559545.1| two-component response regulator NreC [Macrococcus caseolyticus
           JCSC5402]
 gi|222119514|dbj|BAH16849.1| two-component response regulator NreC [Macrococcus caseolyticus
           JCSC5402]
          Length = 216

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G  + EIA +L +S  TV  + A IM K   K++   + YA++  +
Sbjct: 154 LTKRELEILPLIAKGYGNKEIAEMLYVSVKTVEAHKARIMDKLELKSKPELVEYALKKKL 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|219847289|ref|YP_002461722.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219541548|gb|ACL23286.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 217

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++G ++ EIA  L +S  TV  +I++I+ K     R+    YA+R  
Sbjct: 151 QLTPREMDVLRLVAKGMSNKEIADTLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKR 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|315647611|ref|ZP_07900713.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315277050|gb|EFU40391.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 218

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++EG ++ +I+V L IS NTV N++ +I++K   + R     YA
Sbjct: 154 LTAREREILGRVAEGLSNRDISVALCISENTVKNHLKNILQKLHLENRVQLTRYA 208


>gi|297622974|ref|YP_003704408.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164154|gb|ADI13865.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 386

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  I++G ++  I+  LG++  TV NY+ASI +K   ++R+ A+ +A
Sbjct: 326 LTPREQQVLGRIAKGLSNSAISQELGLAPQTVRNYVASIYQKLGVRSRAEAVVWA 380


>gi|296167213|ref|ZP_06849619.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897454|gb|EFG77054.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 238

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++EG ++  I   L IS NT  N++ +I+ KT    R+ A  YA  + +
Sbjct: 177 LTEREVEVLRLLAEGLSNRAIGERLFISTNTAANHVRNILVKTGAANRTQAAMYAADHEL 236

Query: 246 V 246
           +
Sbjct: 237 L 237


>gi|269837581|ref|YP_003319809.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786844|gb|ACZ38987.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +++G ++ EIA  L IS+ TV +++  I  K     R+ A+  A+   I
Sbjct: 147 LTPREIDVLRLVAQGASNKEIAARLSISQATVKSHLIHIFDKLDVDDRTAAVTVALERGI 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|260767312|ref|ZP_05876252.1| DNA-binding HTH domain-containing protein [Vibrio furnissii CIP
           102972]
 gi|260617719|gb|EEX42898.1| DNA-binding HTH domain-containing protein [Vibrio furnissii CIP
           102972]
          Length = 216

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y  ++F+ +  H     ELT RE++ L  +  G ++ ++A  L IS  TV +++  I
Sbjct: 137 LLHYYRHIFQHH--HTQATIELTTRELQILRSLQTGASNMQMAENLFISEFTVKSHLYQI 194

Query: 225 MRKTATKTRSGAIAYAVRN 243
            +K + K R+ AI +A +N
Sbjct: 195 FKKLSVKNRTQAITWANQN 213


>gi|320008841|gb|ADW03691.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 371

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + ++L+ RE E +  IS G ++ +IA    IS  TV N+I  I  K  + +RS AIA
Sbjct: 295 QQYQLSSREAEVMELISSGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIA 351


>gi|288803367|ref|ZP_06408800.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
 gi|288334187|gb|EFC72629.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
          Length = 313

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 246 LSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 305

Query: 246 V 246
           V
Sbjct: 306 V 306


>gi|229055057|ref|ZP_04195489.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603]
 gi|228721329|gb|EEL72853.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603]
          Length = 214

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209

Query: 245 I 245
           +
Sbjct: 210 V 210


>gi|254387192|ref|ZP_05002459.1| hypothetical protein SSAG_06761 [Streptomyces sp. Mg1]
 gi|194346004|gb|EDX26970.1| hypothetical protein SSAG_06761 [Streptomyces sp. Mg1]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E    ++EG T+  IA  L +S  TV+ +++ I RKT   TRS   A   R+
Sbjct: 31  LTPREHEIAALVAEGLTTPAIAARLYLSPRTVDTHLSHIFRKTGVTTRSALAALTARH 88


>gi|157693715|ref|YP_001488177.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194015458|ref|ZP_03054074.1| response regulator [Bacillus pumilus ATCC 7061]
 gi|157682473|gb|ABV63617.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194012862|gb|EDW22428.1| response regulator [Bacillus pumilus ATCC 7061]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++GK++  IA  L I+  TV  +I +I+ K   + R+ A  YA R+ +
Sbjct: 150 LTAREMEILKLIADGKSNKVIAEELFITIKTVKTHITNILSKLDVEDRTQAAVYAHRHKL 209

Query: 246 V 246
           +
Sbjct: 210 I 210


>gi|16330518|ref|NP_441246.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1653009|dbj|BAA17926.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 226

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L+ +++GK++ EIA  L I+  TV  ++ +I+RK   + R+ A   A+   +
Sbjct: 164 LTKRELEILSLVAKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRL 223

Query: 246 V 246
           V
Sbjct: 224 V 224


>gi|325288921|ref|YP_004265102.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964322|gb|ADY55101.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score = 42.0 bits (97), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE +CL  I EG  + EIA  LGI+  TV  ++ +I+ K   K+R  A+    +N
Sbjct: 169 LTSREKDCLKLICEGLRNKEIAEELGITNRTVEYHVGNILEKLGVKSRLEALLKYKKN 226


>gi|311279344|ref|YP_003941575.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308748539|gb|ADO48291.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 237

 Score = 42.0 bits (97), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQANMFKSY------ 176
           G+ N Y  +  D     + L  + P  KG  I+   +   G ++   A++ ++Y      
Sbjct: 103 GIINGYTFVLHDNQNNLVTLSFIIPAAKGAEIMELLIQHKGDISLLLASVHETYLTLTSL 162

Query: 177 -DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +    K  + T RE E L W S GKT  E  +ILGI   TV  ++++I++K        
Sbjct: 163 SEKDTDKHSQFTPRENEILHWTSLGKTYQETGMILGIKVRTVKFHMSNIVKKMGVANARH 222

Query: 236 AIAYAVR 242
           A+   V 
Sbjct: 223 AVRLGVE 229


>gi|289642549|ref|ZP_06474692.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507637|gb|EFD28593.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           R   IG +    A        H G D  LT RE E L  +  G T+  IA  L I+  TV
Sbjct: 317 RYAGIGAMPGDGARPAPVATAHTGGD--LTARESEVLELMVAGATNSVIAETLVIAEETV 374

Query: 218 NNYIASIMRKTATKTRSGAIA 238
            +++  I+RK     RS AIA
Sbjct: 375 KSHVKHILRKLGAVNRSQAIA 395


>gi|290955558|ref|YP_003486740.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260645084|emb|CBG68170.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 970

 Score = 42.0 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE+E    +++G TS  IA  L +SR TV  +++   RKT   +R+   A   R
Sbjct: 900 LTARELEIAELVAQGLTSQAIADRLFVSRRTVETHVSRTFRKTGVSSRTALAALMAR 956


>gi|332664117|ref|YP_004446905.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332931|gb|AEE50032.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L+W++ GK+  +IA IL + + TV ++I +I  K    +++ AI  A  
Sbjct: 148 DSLLTPREREVLSWMARGKSYTQIAEILFVDKETVRSHIKNIYGKLEVHSKADAIEKATL 207

Query: 243 NNIV 246
             ++
Sbjct: 208 EKLI 211


>gi|330986356|gb|EGH84459.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331011222|gb|EGH91278.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  T+  + + +M++      +G + + VR 
Sbjct: 154 YHLTARQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|329939099|ref|ZP_08288473.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329301984|gb|EGG45877.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 223

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|328543741|ref|YP_004303850.1| Two component transcriptional regulator, LuxR family [polymorphum
           gilvum SL003B-26A1]
 gi|326413485|gb|ADZ70548.1| Two component transcriptional regulator, LuxR family [Polymorphum
           gilvum SL003B-26A1]
          Length = 232

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  I++G    EIA  LGIS  TV  YI +I RK     R  A+  AV+ 
Sbjct: 168 IRLTPREADILWGIAKGYRYAEIAAQLGISPQTVTGYIKTIYRKLHVTNRGEAVFEAVQQ 227

Query: 244 NIV 246
            ++
Sbjct: 228 GLI 230


>gi|319651764|ref|ZP_08005890.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2]
 gi|317396583|gb|EFV77295.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2]
          Length = 74

 Score = 42.0 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREVFELLVQDKTTREIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 68


>gi|304404930|ref|ZP_07386590.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345809|gb|EFM11643.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 237

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EI   LGIS NTV N++ +I++K     R     YA    I
Sbjct: 178 LTDREKEILERVAYGDSNKEIGAKLGISENTVKNHLKNILQKLHLDNRVQLARYAHEQGI 237


>gi|300787377|ref|YP_003767668.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796891|gb|ADJ47266.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 215

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE+E +  ++ G+++  IA  L +S  TV  ++  I RK     R+ A++ AVR
Sbjct: 149 DPDLTTREIEVIRLLASGRSNRAIAEALFLSEATVKTHLVRIYRKLGADNRAAAVSEAVR 208

Query: 243 NNIV 246
             ++
Sbjct: 209 RGLL 212


>gi|271961678|ref|YP_003335874.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504853|gb|ACZ83131.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 207

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+GRE   L  ++ G T+ E A  L IS  TV  ++A I  K     R+ A+A A
Sbjct: 145 ELSGRERTVLALVARGSTNKEAAAALFISETTVKTHLAHIYTKLGVSDRASAVAVA 200


>gi|146305270|ref|YP_001185735.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           ymp]
 gi|145573471|gb|ABP83003.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           ymp]
          Length = 474

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  IS G ++ E+A  LGIS +TV  ++ S+ RK    TR+ A   A+   +
Sbjct: 414 LSERETQILQRISSGASNKEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGV 473

Query: 246 V 246
           +
Sbjct: 474 I 474


>gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-3-3Ab]
          Length = 210

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 16/68 (23%), Positives = 42/68 (61%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +   ++ ELT  E + + +++ G ++ EIA ++G+S+ TV +++++++ KT    R+   
Sbjct: 140 IKLDREIELTPTEAKVIQYVARGMSNREIAEVMGVSQRTVESHVSNMLSKTGLHNRTELA 199

Query: 238 AYAVRNNI 245
            +A+ + +
Sbjct: 200 RWALESGL 207


>gi|21230586|ref|NP_636503.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769421|ref|YP_244183.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992608|ref|YP_001904618.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112164|gb|AAM40427.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574753|gb|AAY50163.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734368|emb|CAP52578.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A
Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207


>gi|300790995|ref|YP_003771286.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800509|gb|ADJ50884.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 261

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE + L  ++EG  +  IA +L +S  TV  ++ SI+RK + + R+ A+  A R+
Sbjct: 177 MPLSRREYQVLQLVAEGLENSAIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRS 236

Query: 244 NIV 246
            I+
Sbjct: 237 GIL 239


>gi|302550305|ref|ZP_07302647.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467923|gb|EFL31016.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|239932032|ref|ZP_04688985.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440400|ref|ZP_06579790.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343295|gb|EFE70251.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTGRE E L  ++ G T+ EIA  + +   TV  ++AS++ KT  + R+ A+  A
Sbjct: 157 LTGRESEVLRHVAAGLTNAEIARRMEVGPATVKTHVASVLAKTGARDRTQAVIAA 211


>gi|239817344|ref|YP_002946254.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803921|gb|ACS20988.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 237

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 33/50 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ELT R+++ L W+ +GK + EIA +  +S  TV N++++I+     ++R+
Sbjct: 181 ELTPRQMQVLQWVLDGKANKEIAQLANLSEGTVKNHVSTILLLFGVRSRA 230


>gi|116621568|ref|YP_823724.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224730|gb|ABJ83439.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 225

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  ++EGKTS +IAV+L +   TV +Y  ++M+K      +G    A+   I
Sbjct: 154 LSPRELQVLRLVAEGKTSKDIAVLLDLGLQTVRSYRKTMMKKLGVNNVAGLTQLALAAGI 213


>gi|56420621|ref|YP_147939.1| two component response regulator [Geobacillus kaustophilus HTA426]
 gi|261420284|ref|YP_003253966.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297529750|ref|YP_003671025.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319767094|ref|YP_004132595.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|56380463|dbj|BAD76371.1| two component response regulator [Geobacillus kaustophilus HTA426]
 gi|261376741|gb|ACX79484.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|297253002|gb|ADI26448.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
 gi|317111960|gb|ADU94452.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +     G T+++IA  L IS  TV ++ A+IM+K   K +   I YA++N I
Sbjct: 146 LTNREREIVRLTFLGYTNNQIANKLKISPKTVESHKANIMQKLGIKEKHELIQYALKNQI 205


>gi|330960741|gb|EGH61001.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 207

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ + L+ ++ GKT+ EIA  LGIS  TV  +++S+++     TR+ A A
Sbjct: 147 LTARQKQVLSLVAAGKTNKEIAKDLGISPFTVRIHVSSLLKVLGVSTRAAAAA 199


>gi|317968117|ref|ZP_07969507.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CB0205]
          Length = 89

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 37/58 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +L+ RE+E +  +++G T+ EI   L IS+ TV+N+++++  KT  K R   + +A+
Sbjct: 12  MDLSERELEIIQLVAQGLTNQEIGENLMISKRTVDNHVSNVFTKTGAKNRVALLNWAM 69


>gi|300784317|ref|YP_003764608.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793831|gb|ADJ44206.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K+ E LT RE+E L  I+ G ++ EIA  L +S  TV  ++  +  K   + R+ A+A+A
Sbjct: 147 KEVEGLTARELEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRDRAQAVAFA 206

Query: 241 VRNNI 245
            R  I
Sbjct: 207 YRAGI 211


>gi|253572201|ref|ZP_04849605.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|251838381|gb|EES66468.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV N  
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|126729883|ref|ZP_01745696.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
 gi|126710002|gb|EBA09055.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
          Length = 212

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ++ G    LT RE   L  +++GK++ E+AV L IS  TV  +  +I RK    T +G  
Sbjct: 137 INTGGRDPLTNREQTILLQLAQGKSNKEVAVALDISVRTVETHRKNIKRKLGIATTAGLT 196

Query: 238 AYAVRNNIV 246
            YA+ + ++
Sbjct: 197 RYALEHGVL 205


>gi|238754417|ref|ZP_04615773.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC
           29473]
 gi|10444019|gb|AAG17669.1|AF274748_1 response regulator YruR [Yersinia ruckeri]
 gi|238707450|gb|EEP99811.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC
           29473]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE E L W S GKT  EIA+I GI+  TV +++ ++++K        AI   V
Sbjct: 182 LSPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGV 237


>gi|323489235|ref|ZP_08094467.1| NarL family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
 gi|323397122|gb|EGA89936.1| NarL family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  ++ G T+ E+A  L I+  TV  ++++I+ K     R+ A+ YA ++ 
Sbjct: 146 DLTEREMEILLLLARGLTNQEVADQLFIAVKTVKTHVSNILAKLEVHDRTQAVIYAFQHK 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|260591671|ref|ZP_05857129.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
 gi|260536471|gb|EEX19088.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
          Length = 349

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 282 LSDREKDVIVSVAQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 341

Query: 246 V 246
           V
Sbjct: 342 V 342


>gi|271962987|ref|YP_003337183.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506162|gb|ACZ84440.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  ++E  T+ +IA  LG+S+ TV N+++++  K     R+ AI  A
Sbjct: 149 ELTRREREILGLVAEHLTNPQIAARLGLSQKTVRNHVSAVFSKLQVADRAHAIMRA 204


>gi|237713296|ref|ZP_04543777.1| luxR family transcriptional regulator [Bacteroides sp. D1]
 gi|237718016|ref|ZP_04548497.1| luxR family transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|262406672|ref|ZP_06083221.1| luxR family transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|293369987|ref|ZP_06616554.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|294646076|ref|ZP_06723741.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294810493|ref|ZP_06769146.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|299147711|ref|ZP_07040774.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 3_1_23]
 gi|229446535|gb|EEO52326.1| luxR family transcriptional regulator [Bacteroides sp. D1]
 gi|229452657|gb|EEO58448.1| luxR family transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|262355375|gb|EEZ04466.1| luxR family transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|292634905|gb|EFF53427.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|292638647|gb|EFF57000.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294442257|gb|EFG11071.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298513894|gb|EFI37780.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 3_1_23]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV N  
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|182439643|ref|YP_001827362.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326780308|ref|ZP_08239573.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178468159|dbj|BAG22679.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660641|gb|EGE45487.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|329947902|ref|ZP_08294834.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523526|gb|EGF50624.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L   ++G T  E+A  + +S  T  N+++  M KT   TR+ A+  A +
Sbjct: 138 DSPLTARETEVLQAAADGATVAEVARRVHLSEGTTRNHLSQAMAKTDAPTRAAAVHIAAQ 197

Query: 243 NN 244
             
Sbjct: 198 KG 199


>gi|292558970|gb|ADE31971.1| Response regulator [Streptococcus suis GZ1]
          Length = 190

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT  E + L  ++EG ++ EIA  L +S  TV NY+ SI+ K   + R+ A+  A
Sbjct: 129 LTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENRTAAVKVA 183


>gi|119776080|ref|YP_928820.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768580|gb|ABM01151.1| transcriptional regulator, LuxR family [Shewanella amazonensis
           SB2B]
          Length = 221

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LTGRE   +  +  G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTGRECTIIQLVGSGARNKEIADRLCISEHTVKAHISSIFRKTQSRNR 203


>gi|115372616|ref|ZP_01459923.1| two-component system regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823849|ref|YP_003956207.1| two-component system, regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370337|gb|EAU69265.1| two-component system regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396921|gb|ADO74380.1| Two-component system, regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE+E +  I+ G ++ EIA +LG +  TV N  ++I+ K   + R+ A+  A+
Sbjct: 153 LTRRELEVMRLIARGLSNREIATVLGTAEGTVKNQTSNILAKLGVRDRTRAVLRAM 208


>gi|84394370|ref|ZP_00993090.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|84374999|gb|EAP91926.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
          Length = 229

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+A +
Sbjct: 166 NVDLTIRELQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 225

Query: 243 N 243
           N
Sbjct: 226 N 226


>gi|330942061|gb|EGH44732.1| transcriptional regulator LasR [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L W + GKT+ EIA IL  S   +N + A + +K    +R  AI  A++  
Sbjct: 176 QLSHRELEVLKWSAFGKTTWEIARILSCSEANINYHFAKVRKKFNVGSRRMAIVKALQTG 235

Query: 245 IV 246
           ++
Sbjct: 236 LL 237


>gi|326443131|ref|ZP_08217865.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 324

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 177 DVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           + H G    EL+ RE E +  I+ G T+ EIA    IS+ TV N+I  I  K  T +R  
Sbjct: 249 ETHGGTVLGELSRREAEVMELIAAGLTNQEIAAACFISQKTVKNHINRIFAKLNTGSRGE 308

Query: 236 AIA 238
           AIA
Sbjct: 309 AIA 311


>gi|325920818|ref|ZP_08182719.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325548715|gb|EGD19668.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A
Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207


>gi|320325415|gb|EFW81480.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 89

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   E+  RE E L  + +G T+ EIA  L IS  TV ++++S++RK+  KTR   +A  
Sbjct: 5   GSSMEVAMREQEVLGLLLQGCTNKEIARQLRISDYTVRDHVSSLLRKSRVKTRVELMARC 64

Query: 241 V 241
           V
Sbjct: 65  V 65


>gi|229490955|ref|ZP_04384788.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
 gi|229322071|gb|EEN87859.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
          Length = 212

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + L  ++EGK++ EIA  L +   TV  ++A++M KT    R     Y ++N
Sbjct: 153 LTDRESQVLALVAEGKSNQEIAETLHLGVTTVKTHVANLMSKTGCDNRVRLAVYHLQN 210


>gi|296128509|ref|YP_003635759.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296020324|gb|ADG73560.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  +++G ++ E+A  LGI   TV  +++ ++RK   + R+  +  A    +
Sbjct: 148 VTAREREVLAAVAQGLSNAEVAARLGIGEQTVKTHVSELLRKLGRRDRAQLVVAAYEGGV 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|330888889|gb|EGH21550.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 197

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  T+  + + +M++      +G + + VR 
Sbjct: 131 YHLTARQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 190

Query: 244 NIV 246
            I+
Sbjct: 191 RII 193


>gi|326440245|ref|ZP_08214979.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 224

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|317491518|ref|ZP_07949954.1| autoinducer binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316921065|gb|EFV42388.1| autoinducer binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            T RE E L W S GKT  EIA I+GIS  TV  ++ +++ K        AI   V 
Sbjct: 181 FTAREHEVLYWASMGKTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVE 237


>gi|225352800|ref|ZP_03743823.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156407|gb|EEG69976.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 248

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 187 DLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYENH 246

Query: 245 IV 246
           +V
Sbjct: 247 LV 248


>gi|297198515|ref|ZP_06915912.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197716175|gb|EDY60209.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|111224202|ref|YP_714996.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111151734|emb|CAJ63454.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 201

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTGRE + L    +G T  +IA  L +S  TV NY++S++ KT T+ R  A+  A
Sbjct: 141 LTGRERDVLVAARDGATVADIAGRLFLSEGTVRNYLSSVIAKTGTRNRMEALRTA 195


>gi|51892315|ref|YP_075006.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863]
 gi|51856004|dbj|BAD40162.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863]
          Length = 229

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           WG    L+ RE+E    +  G+++ EIA  L IS NTV  ++ ++ RKT T++R
Sbjct: 20  WGA--HLSQRELEVGRLLVSGRSTQEIAAALFISENTVKTHLRNLYRKTRTRSR 71


>gi|25010373|ref|NP_734768.1| hypothetical protein gbs0299 [Streptococcus agalactiae NEM316]
 gi|76788230|ref|YP_329033.1| LuxR family transcriptional regulator [Streptococcus agalactiae
           A909]
 gi|77404997|ref|ZP_00782098.1| response regulator [Streptococcus agalactiae H36B]
 gi|23094725|emb|CAD45944.1| unknown [Streptococcus agalactiae NEM316]
 gi|76563287|gb|ABA45871.1| DNA-binding response regulator, LuxR family [Streptococcus
           agalactiae A909]
 gi|77176436|gb|EAO79204.1| response regulator [Streptococcus agalactiae H36B]
          Length = 196

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A
Sbjct: 136 LSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190


>gi|319650145|ref|ZP_08004294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317398326|gb|EFV79015.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 212

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I EG T+ EI+  L I   TV  ++++I+ K     R+ A  YA RN 
Sbjct: 147 DLTEREFDVLLCIGEGMTNQEISEELFIGIKTVKTHVSNILSKLGVTDRTQAAVYANRNG 206

Query: 245 IV 246
           I+
Sbjct: 207 II 208


>gi|290961675|ref|YP_003492857.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260651201|emb|CBG74322.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|269125776|ref|YP_003299146.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310734|gb|ACY97108.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 220

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I++G+++ EIA  L +S  TV N++++I  K     R+ AI  A
Sbjct: 157 ELTEREREVLQLIAQGRSNGEIAQTLFLSPKTVRNHVSNIFMKLHVADRAQAIVLA 212


>gi|182414056|ref|YP_001819122.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177841270|gb|ACB75522.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 210

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAV 208
           +L D L +I     Y +  FK+      +D +     L+  E   L++I  G + +EI  
Sbjct: 110 MLGDALADIAGGRTYFSPAFKAAQRAHRRDQQSADKLLSDTERRVLSFIGHGLSDEEIGQ 169

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LGI+RNT   + + I+RK      +   AYAVR+ 
Sbjct: 170 RLGITRNTAQTHRSHILRKLRVGNSARLAAYAVRHG 205


>gi|159901595|ref|YP_001547841.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159894634|gb|ABX07713.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 73

 Score = 41.6 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ R++E L  ++EGKT   IAV+LGI  +TV  Y+  I      + R+ A+ +
Sbjct: 7   LSPRKMEILALVAEGKTDRHIAVLLGIGESTVKTYLHEIYTLLRVQNRAAAVYW 60


>gi|71737566|ref|YP_275380.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71558119|gb|AAZ37330.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320323892|gb|EFW79976.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320328029|gb|EFW84034.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330875642|gb|EGH09791.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 220

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  T+  + + +M++      +G + + VR 
Sbjct: 154 YHLTARQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 213

Query: 244 NIV 246
            I+
Sbjct: 214 RII 216


>gi|68535465|ref|YP_250170.1| LuxR family transcriptional regulator [Corynebacterium jeikeium
           K411]
 gi|68263064|emb|CAI36552.1| putative transcriptional regulator (LuxR family) [Corynebacterium
           jeikeium K411]
          Length = 285

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 223 KLSARELDVLACVALGHTNVEAAAEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 280


>gi|22127251|ref|NP_670674.1| transcriptional activator [Yersinia pestis KIM 10]
 gi|45443197|ref|NP_994736.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597561|ref|YP_071752.1| quorum-sensing transcriptional regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806277|ref|YP_650193.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua]
 gi|108813343|ref|YP_649110.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|149367009|ref|ZP_01889042.1| quorum-sensing transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|153947986|ref|YP_001399708.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162421668|ref|YP_001604810.1| LuxR family transcriptional regulator [Yersinia pestis Angola]
 gi|165927117|ref|ZP_02222949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939283|ref|ZP_02227832.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008826|ref|ZP_02229724.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212673|ref|ZP_02238708.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402287|ref|ZP_02307757.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419559|ref|ZP_02311312.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425196|ref|ZP_02316949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468622|ref|ZP_02333326.1| transcriptional regulator, LuxR family protein [Yersinia pestis
           FV-1]
 gi|170023040|ref|YP_001719545.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186896695|ref|YP_001873807.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928157|ref|YP_002346032.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92]
 gi|229836665|ref|ZP_04456830.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           A]
 gi|229840908|ref|ZP_04461067.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842531|ref|ZP_04462686.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903808|ref|ZP_04518921.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|270487592|ref|ZP_06204666.1| autoinducer binding domain protein [Yersinia pestis KIM D27]
 gi|294502863|ref|YP_003566925.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003]
 gi|21960323|gb|AAM86925.1|AE013939_2 putative transcriptional activator [Yersinia pestis KIM 10]
 gi|30146756|gb|AAC28703.2| response regulator YtbR [Yersinia pseudotuberculosis]
 gi|45438065|gb|AAS63613.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590843|emb|CAH22497.1| Quorum-sensing transcriptional regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776991|gb|ABG19510.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|108778190|gb|ABG12248.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua]
 gi|115346768|emb|CAL19652.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92]
 gi|149290623|gb|EDM40699.1| quorum-sensing transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|152959481|gb|ABS46942.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           IP 31758]
 gi|162354483|gb|ABX88431.1| transcriptional regulator, LuxR family [Yersinia pestis Angola]
 gi|165912757|gb|EDR31385.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921013|gb|EDR38237.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992165|gb|EDR44466.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205965|gb|EDR50445.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962300|gb|EDR58321.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048324|gb|EDR59732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055959|gb|EDR65740.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749574|gb|ACA67092.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186699721|gb|ACC90350.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679578|gb|EEO75681.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|229690841|gb|EEO82895.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697274|gb|EEO87321.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705608|gb|EEO91617.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           A]
 gi|262360896|gb|ACY57617.1| quorum-sensing transcriptional regulator [Yersinia pestis D106004]
 gi|262364841|gb|ACY61398.1| quorum-sensing transcriptional regulator [Yersinia pestis D182038]
 gi|270336096|gb|EFA46873.1| autoinducer binding domain protein [Yersinia pestis KIM D27]
 gi|294353322|gb|ADE63663.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003]
 gi|320013931|gb|ADV97502.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W S GKT  EIA+I  I+  TV  +I ++++K        AI   V   I
Sbjct: 182 LSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEI 241

Query: 246 V 246
           +
Sbjct: 242 I 242


>gi|295084625|emb|CBK66148.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bacteroides xylanisolvens XB1A]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV N  
Sbjct: 137 LSSREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 196

Query: 246 V 246
           +
Sbjct: 197 I 197


>gi|257484713|ref|ZP_05638754.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 214

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT R++E L  I  GK++ EIA  LG+S  T+  + + +M++      +G + + VR 
Sbjct: 148 YHLTARQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRE 207

Query: 244 NIV 246
            I+
Sbjct: 208 RII 210


>gi|261407019|ref|YP_003243260.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283482|gb|ACX65453.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 601

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++LT RE+E L ++SEG     IA  L +S  TV NY +S+  K   + R  A+  A
Sbjct: 538 YDLTPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVRNREEAVQKA 594


>gi|23094404|emb|CAD28140.1| putative LuxR-like transcriptional regulator [Rhodococcus opacus]
          Length = 413

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  ++ GK +  IA  LGIS +T+  ++AS+++K     R  A A  ++  I
Sbjct: 345 LNPRELEVLAHLAVGKRNKAIATELGISESTIKFHVASVLKKLDVANRGEAGAIGIQAGI 404

Query: 246 V 246
           V
Sbjct: 405 V 405


>gi|66044867|ref|YP_234708.1| LuxR transcriptional regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|33413265|emb|CAD97431.1| AHL regulator [Pseudomonas syringae pv. syringae]
 gi|63255574|gb|AAY36670.1| regulatory protein, LuxR:Autoinducer-binding [Pseudomonas syringae
           pv. syringae B728a]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+  L W++ GK   EIA I  IS  TV  +++++  K   +T   A+  A+   
Sbjct: 186 KLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245

Query: 245 IV 246
           +V
Sbjct: 246 MV 247


>gi|113476331|ref|YP_722392.1| LuxR family transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110167379|gb|ABG51919.1| transcriptional regulator, LuxR family [Trichodesmium erythraeum
           IMS101]
          Length = 87

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 41/57 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ +  +++G T+++IA  L IS+ TV+N+I++I+ KT+T  R   + +A++
Sbjct: 12  LSERELQVIELVADGLTNEKIASRLEISKRTVDNHISNILSKTSTHNRVELVRWALQ 68


>gi|326332943|ref|ZP_08199200.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325949301|gb|EGD41384.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score = 41.6 bits (96), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG ++ EIA  L IS  TV  +  +I+ K   + R+    YA+R  +
Sbjct: 158 LTEREDEVLKLIAEGHSTREIARELTISYKTVERHRENILAKLGLRDRTQVTRYAIRAGL 217

Query: 246 V 246
           +
Sbjct: 218 I 218


>gi|317124594|ref|YP_004098706.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588682|gb|ADU47979.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM
           43043]
          Length = 540

 Score = 41.6 bits (96), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G+T+ +IA  L +S  TV  ++++I  K A  +R+ A AYA  +++ 
Sbjct: 481 TAREAEVLRLVASGRTNPQIAAELFLSDKTVARHLSNIFTKIAVTSRTAAAAYAREHDLA 540


>gi|307277198|ref|ZP_07558302.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2134]
 gi|306506128|gb|EFM75294.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2134]
          Length = 197

 Score = 41.6 bits (96), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   +EG    EIA  L ISR TVNN++ SI  K    +   AI  A+   I
Sbjct: 132 LSKREKEILKCAAEGFKQQEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQAIELGI 191

Query: 246 V 246
           +
Sbjct: 192 I 192


>gi|302524687|ref|ZP_07277029.1| predicted protein [Streptomyces sp. AA4]
 gi|302433582|gb|EFL05398.1| predicted protein [Streptomyces sp. AA4]
          Length = 499

 Score = 41.6 bits (96), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + LT ++ G T  EIA  LGIS  TV  +   +  K   + R+ AI YA  + +
Sbjct: 174 LTPRESDVLTAVARGLTDAEIAGTLGISTTTVEAHYERVCAKLRLRDRAAAIVYAFDHGL 233

Query: 246 V 246
           V
Sbjct: 234 V 234


>gi|260578331|ref|ZP_05846246.1| LuxR family bacterial regulatory protein [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603512|gb|EEW16774.1| LuxR family bacterial regulatory protein [Corynebacterium jeikeium
           ATCC 43734]
          Length = 288

 Score = 41.6 bits (96), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 226 KLSARELDVLACVALGHTNVEAAAEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 283


>gi|254509824|ref|ZP_05121891.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
 gi|221533535|gb|EEE36523.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
          Length = 215

 Score = 41.6 bits (96), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 148 LTGREQTILLELAQGKSNKEVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 207

Query: 246 V 246
           +
Sbjct: 208 L 208


>gi|239827940|ref|YP_002950564.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808233|gb|ACS25298.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70]
          Length = 74

 Score = 41.6 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 12  LTKREREIFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQAVIELLR 68


>gi|134291839|ref|YP_001115608.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135028|gb|ABO59353.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           D+R    TF +  +R G  +   + R    + +W    + A  +N+  S DV       L
Sbjct: 119 DHRGAMGTFSL--VRGGPPISPEELRRTEPEMIWLCQFVHATMSNLIVS-DVMPSGAMRL 175

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + RE E L W +EGKT+ E+A IL ++   V  +I + M K     ++ A   A 
Sbjct: 176 SLREKEVLHWTAEGKTAAEVAAILQLTERNVGFHIQNAMDKLDATNKTHATVKAA 230


>gi|300789929|ref|YP_003770220.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299799443|gb|ADJ49818.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE + L  ++EG  ++EIA  L  S  TV N +  +M +     R+ A+AYA+R   
Sbjct: 140 LAARECDVLRLVAEGFGTEEIAAKLCYSERTVKNVLYGLMTRCGLNNRAHAVAYALRAGA 199

Query: 246 V 246
           +
Sbjct: 200 I 200


>gi|288904269|ref|YP_003429490.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|306830297|ref|ZP_07463468.1| possible response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|288730994|emb|CBI12538.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304427544|gb|EFM30645.1| possible response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 207

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T ++ + L  +++G T+ EIA  L ++  TV  Y+  +        R+ AIAYA+R+N+
Sbjct: 147 ITEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNL 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|167031635|ref|YP_001666866.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166858123|gb|ABY96530.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 258

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD-----FE-LTGREVECLTWISEGKTSDEIAVIL 210
           D L++    A  Q    ++ DV   +      FE L+ R++E    +S+GKT+ +IA  L
Sbjct: 155 DELYQDLEKARGQGTHRRASDVEESESELPAAFEKLSPRQLEVARLVSKGKTNYQIACEL 214

Query: 211 GISRNTVNNYIASIMRKTATKTRS 234
           GI+ NTV  Y++ ++R T    R+
Sbjct: 215 GITENTVKLYVSQVLRLTHMHNRT 238


>gi|29830918|ref|NP_825552.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608031|dbj|BAC72087.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+ EI   L ++  T+ NY++S++ K   + RS A AY  R
Sbjct: 157 LTDQERRILDLIGEGLTNREIGERLHLAEKTIKNYVSSLLSKLGMQRRSQAAAYVAR 213


>gi|329934268|ref|ZP_08284347.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
 gi|329305864|gb|EGG49719.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
          Length = 937

 Score = 41.6 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+GRE + L  ++  +T++EIA  L +S NTV  ++ S  RK A   R  A+  A
Sbjct: 876 ELSGRERDVLRRLARMRTTEEIAADLYVSVNTVKTHLKSAYRKLAVNRRGDAVNRA 931


>gi|302340566|ref|YP_003805772.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637751|gb|ADK83178.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 214

 Score = 41.6 bits (96), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + W KD  LT RE E    IS G  + EIA  L I+  TV NY++SI+ K   K R   I
Sbjct: 149 IEWYKD--LTKREKEIFKLISRGYDNTEIADELCIAYQTVRNYVSSIISKLGIKNRYEII 206

Query: 238 AYAVR 242
             A R
Sbjct: 207 KLANR 211


>gi|260577934|ref|ZP_05845864.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603954|gb|EEW17201.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
          Length = 227

 Score = 41.6 bits (96), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+ G ++ EIA  L IS  TV  ++  ++ KT ++ R  A+ +A ++++
Sbjct: 157 LTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHAVLFAFKHHL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|194365353|ref|YP_002027963.1| LuxR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348157|gb|ACF51280.1| transcriptional regulator, LuxR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 234

 Score = 41.6 bits (96), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L W++ G+   EIA  LG+S  TV N++    ++    T + A+  A R  
Sbjct: 172 LSAREREVLRWVAAGRRQAEIAATLGLSARTVENHLRRARQRLGVATTAQAVRAASRRG 230


>gi|4322356|gb|AAD16025.1| regulatory protein CsgD [Escherichia coli]
          Length = 83

 Score = 41.6 bits (96), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 2   LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 61

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 62  FKKIAVKNRTQAVSWA 77


>gi|56697147|ref|YP_167510.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
 gi|56678884|gb|AAV95550.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L W++ GK+  +I  IL IS  TV  ++ S   K    T + A+  AV   +
Sbjct: 170 LSTREVEILQWVAAGKSQQDIGDILSISHRTVEVHLRSSREKLCALTTAQAVGRAVGLGL 229

Query: 246 V 246
           +
Sbjct: 230 I 230


>gi|54298259|ref|YP_124628.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris]
 gi|53752044|emb|CAH13470.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris]
          Length = 267

 Score = 41.6 bits (96), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE++CL+ IS+G T  +I+  L +S  TVN +  SI  K +    + A++ A R
Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFR 262


>gi|239940109|ref|ZP_04692046.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986597|ref|ZP_04707261.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291443540|ref|ZP_06582930.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346487|gb|EFE73391.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTDREVEVLKLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|158336971|ref|YP_001518146.1| LuxR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158307212|gb|ABW28829.1| transcriptional regulator, LuxR family [Acaryochloris marina
           MBIC11017]
          Length = 87

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 40/60 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L+ RE++ +  ++ G  ++EI+  L IS+ TV+N+I++I+ KT T  R   + +A++
Sbjct: 9   NHQLSERELQVIELVASGLKNEEISQRLDISKRTVDNHISNILTKTDTDNRVALVRWALQ 68


>gi|254234270|ref|ZP_04927593.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719]
 gi|126166201|gb|EAZ51712.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G    L+ RE E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+
Sbjct: 173 VSAGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232

Query: 238 AYAVR 242
           A A+R
Sbjct: 233 ARALR 237


>gi|330973884|gb|EGH73950.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+  L W++ GK   EIA I  IS  TV  +++++  K   +T   A+  A+   
Sbjct: 186 KLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245

Query: 245 IV 246
           +V
Sbjct: 246 MV 247


>gi|319787738|ref|YP_004147213.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466250|gb|ADV27982.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +
Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|294667407|ref|ZP_06732625.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602848|gb|EFF46281.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 923

 Score = 41.6 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 37/58 (63%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R GA+A A++  ++
Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSREGALAQALQRGLL 909


>gi|294627134|ref|ZP_06705722.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598567|gb|EFF42716.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 926

 Score = 41.6 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 37/58 (63%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R GA+A A++  ++
Sbjct: 855 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSREGALAQALQRGLL 912


>gi|197344637|gb|ACH69668.1| LuxR family transcriptional regulator [uncultured proteobacterium]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +L+ RE ECL WI+EGK++  I+ +L IS  TV  +I ++  K    TR  A    V
Sbjct: 184 KLSRREHECLKWIAEGKSNGVISDLLKISEPTVEFHIRNLFTKLNVATRVQAAVVGV 240


>gi|134098410|ref|YP_001104071.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911033|emb|CAM01146.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 241

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 31/46 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           EL+GREVE L  +++G+++ EI   L +S  TV ++++ I RK  T
Sbjct: 176 ELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGT 221


>gi|21244146|ref|NP_643728.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109777|gb|AAM38264.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 923

 Score = 41.6 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 37/58 (63%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R GA+A A++  ++
Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSREGALAQALQRGLL 909


>gi|319791419|ref|YP_004153059.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593882|gb|ADU34948.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS]
          Length = 482

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E L  IS G ++ E A +LGIS +TV  ++ +I RK    TR+ A   A+
Sbjct: 422 LSSREIEVLGRISLGDSNKEAARVLGISPSTVRAHLENIFRKLECTTRAAATLKAL 477


>gi|257054106|ref|YP_003131938.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256583978|gb|ACU95111.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 221

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I  G ++ EIA  L I+ +TV  +I +   K   + R+GA+ YA +  +
Sbjct: 160 LTAREREILGLIGAGLSNAEIAARLFIAESTVKTHINNAFAKIGVRNRAGAVRYAYQTGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|218129118|ref|ZP_03457922.1| hypothetical protein BACEGG_00692 [Bacteroides eggerthii DSM 20697]
 gi|217988753|gb|EEC55072.1| hypothetical protein BACEGG_00692 [Bacteroides eggerthii DSM 20697]
          Length = 192

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L+ RE+E L  I++G  + EIA  L IS  TV  +  +I+ K   K+ SG   YAV 
Sbjct: 124 NHDLSAREIEVLALITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVM 183

Query: 243 NNIV 246
           +  V
Sbjct: 184 HGYV 187


>gi|254488693|ref|ZP_05101898.1| DNA-binding response regulator, LuxR family [Roseobacter sp.
           GAI101]
 gi|214045562|gb|EEB86200.1| DNA-binding response regulator, LuxR family [Roseobacter sp.
           GAI101]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 152 RIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           R++ +D L  +     +  + +         D +  +   LT ++   L  I EGK + +
Sbjct: 126 RLVFKDALARVKAGGIFTPSGYVDGREPDGSDANLARLASLTNQQYRILQLICEGKLNKQ 185

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           IA  L I+  TV  ++ +IMRK   ++R+ A+  A
Sbjct: 186 IAFELSIAETTVKAHVTAIMRKLGVQSRTQAVLVA 220


>gi|188585380|ref|YP_001916925.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350067|gb|ACB84337.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 232

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ELT RE+E    +  G ++ +IA  L I++ TV NYI +I  K   K R+ A+ Y
Sbjct: 172 ELTQREIEIAQLMVAGLSNKKIAEKLFITQGTVKNYITNIYSKLGVKERTSAVLY 226


>gi|170736431|ref|YP_001777691.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254249144|ref|ZP_04942464.1| PAS/PAC domain [Burkholderia cenocepacia PC184]
 gi|124875645|gb|EAY65635.1| PAS/PAC domain [Burkholderia cenocepacia PC184]
 gi|169818619|gb|ACA93201.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 510

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           P  +  R C L    D++  +   M L       ++D  W    L    AN+ ++     
Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +
Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484

Query: 240 AVRNNIV 246
           A    IV
Sbjct: 485 ARERGIV 491


>gi|77410614|ref|ZP_00786974.1| response regulator [Streptococcus agalactiae CJB111]
 gi|77163329|gb|EAO74280.1| response regulator [Streptococcus agalactiae CJB111]
          Length = 196

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A
Sbjct: 136 LSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190


>gi|311899311|dbj|BAJ31719.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           LT RE E    ++EG+T+ +IA  L IS  TV  ++ASI RK   + R G
Sbjct: 156 LTRREREVAGKVAEGRTNADIAGELFISAGTVKTHVASIQRKLGVRNRVG 205


>gi|167462440|ref|ZP_02327529.1| Two-component response regulator ComA [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322383891|ref|ZP_08057631.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151606|gb|EFX44686.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 209

 Score = 41.6 bits (96), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 167 AYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           A    +F+   +  G+D    LT  E+  +  I +G T+++IA ++ +S+ +V+NY+  I
Sbjct: 127 AISLELFRQLQLGKGEDDGTALTDEEINIMNQIIKGATNEQIAEVIHMSKRSVDNYVRKI 186

Query: 225 MRKTATKTRSGAI 237
             K   K+R+ AI
Sbjct: 187 YDKFGVKSRAQAI 199


>gi|145597841|ref|YP_001161917.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           F]
 gi|145209537|gb|ABP38944.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           F]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W S GKT  EIA+I  I+  TV  +I ++++K        AI   V   I
Sbjct: 182 LSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEI 241

Query: 246 V 246
           +
Sbjct: 242 I 242


>gi|330961312|gb|EGH61572.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 240

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GK + EI+VI  IS  TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELETLQWARDGKNAWEISVIRDISEATVKYHLKAIYAKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|296127965|ref|YP_003635215.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
 gi|296019780|gb|ADG73016.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
          Length = 78

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S + H      LT RE   L  ++E  T +EIA  L ++RNTV + + S+ RK    TR+
Sbjct: 7   SLNPHILGTHSLTRRERVVLAELTEDVTLEEIATRLFVTRNTVKSQVRSVYRKIGVSTRA 66

Query: 235 GAIAYAVRNNI 245
            A+A+A  + I
Sbjct: 67  EAVAWAEAHGI 77


>gi|218289695|ref|ZP_03493903.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512532|ref|YP_003185966.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218240152|gb|EED07336.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257479258|gb|ACV59577.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 221

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           KD  LT RE + L  ++ GK++++IA  L I+  T  N+++ I+ K     RS A+ +A 
Sbjct: 153 KDL-LTAREFDVLCQMAAGKSNEQIAESLHITLKTAKNHVSHILAKLNVSDRSQAVLHAY 211

Query: 242 RN 243
           R 
Sbjct: 212 RE 213


>gi|251794754|ref|YP_003009485.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542380|gb|ACS99398.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 33/65 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W  +  LT RE E L    EG  + EIA  L +S  TV NY++  ++K   K R  AI  
Sbjct: 133 WEAENPLTEREREVLRLAREGLPAGEIASRLFLSAGTVRNYLSEAIQKLDAKNRIDAIGI 192

Query: 240 AVRNN 244
           A +N 
Sbjct: 193 AEKNG 197


>gi|148359909|ref|YP_001251116.1| transcriptional regulator [Legionella pneumophila str. Corby]
 gi|148281682|gb|ABQ55770.1| transcription regulator protein, response regulator containing
           CheY-like receiver domain and HTH DNA-binding domain
           [Legionella pneumophila str. Corby]
          Length = 267

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE++CL+ IS+G T  +I+  L +S  TVN +  SI  K +    + A++ A R
Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFR 262


>gi|329928337|ref|ZP_08282208.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937894|gb|EGG34299.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 599

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++LT RE+E L ++SEG     IA  L +S  TV NY +S+  K   + R  A+  A
Sbjct: 536 YDLTPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVRNREEAVQKA 592


>gi|326331408|ref|ZP_08197698.1| two component transcriptional regulator, LuxR family
           [Nocardioidaceae bacterium Broad-1]
 gi|325950664|gb|EGD42714.1| two component transcriptional regulator, LuxR family
           [Nocardioidaceae bacterium Broad-1]
          Length = 222

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E + W++ G+++ EIA  L +S +TV  +++  M K   + R+  + +A+ + 
Sbjct: 160 DLTEREREMVAWVATGRSNAEIAAELVVSPDTVRTHVSRAMVKLHARDRAQLVVFAIESG 219

Query: 245 I 245
           +
Sbjct: 220 L 220


>gi|317474899|ref|ZP_07934168.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908802|gb|EFV30487.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 192

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L+ RE+E L  I++G  + EIA  L IS  TV  +  +I+ K   K+ SG   YAV 
Sbjct: 124 NHDLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVM 183

Query: 243 NNIV 246
           +  V
Sbjct: 184 HGYV 187


>gi|298483146|ref|ZP_07001326.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. D22]
 gi|298270663|gb|EFI12244.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. D22]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV N  
Sbjct: 135 LSSREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|297161600|gb|ADI11312.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 216

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 155 LTEREREVLALIADGRSNREIARALILSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 214


>gi|291085584|ref|ZP_06571117.1| putative csgAB operon transcriptional regulatory protein
           [Citrobacter youngae ATCC 29220]
 gi|291071350|gb|EFE09459.1| putative csgAB operon transcriptional regulatory protein
           [Citrobacter youngae ATCC 29220]
          Length = 159

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 67  VLRGECYFSQKLASYLITHSGNYRYNSTESAILTHREKEILNKLRIGASNIEIARSLFIS 126

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NTV  ++ ++ +K A K R+ A+++A  N
Sbjct: 127 ENTVKTHLYNLFKKIAVKNRTQAVSWANDN 156


>gi|284043929|ref|YP_003394269.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948150|gb|ADB50894.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 221

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G T+ EIA  L ++  TV  ++ SI  K   + R+ AI YA  + +
Sbjct: 154 LTEREHDVLRLMARGATNAEIAATLFVAEATVKTHVGSIFSKLDVRDRAAAIVYAYDHGV 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|259649548|dbj|BAI41710.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN
Sbjct: 142 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 199


>gi|227541066|ref|ZP_03971115.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227183326|gb|EEI64298.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 280

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 218 KLSARELDVLSCVALGHTNVEAAKEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 275


>gi|86157284|ref|YP_464069.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773795|gb|ABC80632.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG  +  IA  LGIS +T   ++ +I+ K    +R+ AI  A R  +
Sbjct: 149 LTPREREVLALVAEGLGNKGIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLGL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|85059718|ref|YP_455420.1| transcriptional activator [Sodalis glossinidius str. 'morsitans']
 gi|84780238|dbj|BAE75015.1| transcriptional activator [Sodalis glossinidius str. 'morsitans']
          Length = 240

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E L W S GKT +EI+ IL I   TV  +I +I+ K        AI  A+ 
Sbjct: 179 LSPREKEVLFWASVGKTYNEISTILSIREGTVKFHIRNIINKLGVANAKHAITRAME 235


>gi|76797806|ref|ZP_00780071.1| response regulator [Streptococcus agalactiae 18RS21]
 gi|76586820|gb|EAO63313.1| response regulator [Streptococcus agalactiae 18RS21]
          Length = 186

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A
Sbjct: 126 LSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 180


>gi|328951348|ref|YP_004368683.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451672|gb|AEB12573.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 217

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+E L  +++G ++ EIA  LG+S  TV N ++ +  K   + R+ A  +AVR  I
Sbjct: 156 ELEILQLLAQGCSNQEIADALGLSEKTVRNRLSEVFAKLGAQNRTQAALFAVRAGI 211


>gi|302524738|ref|ZP_07277080.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302433633|gb|EFL05449.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 218

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  I +G  + EIA  L IS  TV  +I ++  K    +R+ A+ YA++
Sbjct: 151 DLSLTAREREILGLIGDGLRNPEIAAALVISEATVKTHINNLFAKAGFHSRADAVRYALK 210


>gi|271964817|ref|YP_003339013.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507992|gb|ACZ86270.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ++ GK++ EIA  L +S+ TV N++ SI  K     R+ A+  A R  
Sbjct: 165 ELTQREREILDLLASGKSNAEIARRLFLSQKTVKNHLTSIFAKLQVADRTQAVVRARRAG 224

Query: 245 I 245
           +
Sbjct: 225 L 225


>gi|21223502|ref|NP_629281.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|9967644|emb|CAC05762.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 204

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A RN 
Sbjct: 144 LTDREREILRAAADGSTNAELASALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVA-RNK 201


>gi|333026039|ref|ZP_08454103.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745891|gb|EGJ76332.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 220

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 179 HWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H G  + ELT RE E L  ++ G ++ EIA  L ++ +TV  +++ ++ K   + R+ A 
Sbjct: 149 HPGGAYGELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAA 208

Query: 238 AYAVRNNIV 246
            +A  N +V
Sbjct: 209 VFAYENRLV 217


>gi|325977247|ref|YP_004286963.1| nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177175|emb|CBZ47219.1| Nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T ++ + L  +++G T+ EIA  L ++  TV  Y+  +        R+ AIAYA+R+N+
Sbjct: 143 ITEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNL 202

Query: 246 V 246
           +
Sbjct: 203 I 203


>gi|313884941|ref|ZP_07818693.1| putative oxygen regulatory protein NreC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619632|gb|EFR31069.1| putative oxygen regulatory protein NreC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G ++ EIA  L I+  TV  ++++I+ K     R+ A  YA ++ 
Sbjct: 148 ELTRREYEVLLLIAKGYSNQEIADELFITLKTVKTHVSNILAKLEVSDRTQATIYAYQHK 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|239979053|ref|ZP_04701577.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291450931|ref|ZP_06590321.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353880|gb|EFE80782.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 227

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           GL+A++ A      D   G   E    LTGRE E L  ++ G ++DEIA  L +S  TV 
Sbjct: 135 GLIASFLAQSGHGADERPGAREERLAALTGREREVLVHVAGGLSNDEIAGRLQVSPLTVK 194

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++   M K   + R+  +  A    +V
Sbjct: 195 THVNRAMAKLGARDRAQLVVTAYETGLV 222


>gi|238061662|ref|ZP_04606371.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883473|gb|EEP72301.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG ++ E+A  L +S  TV +++A I+ K   + R  A+  A R  +
Sbjct: 157 LTARELEVLRLLAEGLSNAELAERLHLSEATVKSHVARILAKLGLRDRVQAVVVAYRTGV 216


>gi|255325933|ref|ZP_05367025.1| LuxR-family transcriptional regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311740234|ref|ZP_07714066.1| LuxR family bacterial regulatory protein [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297145|gb|EET76470.1| LuxR-family transcriptional regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311304789|gb|EFQ80860.1| LuxR family bacterial regulatory protein [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 279

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A 
Sbjct: 214 QSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAAR 273

Query: 242 R 242
           R
Sbjct: 274 R 274


>gi|226310338|ref|YP_002770232.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093286|dbj|BAH41728.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            T RE++ +  I++G ++ EIA  L IS  TV NYI SI+ KTA + R+    Y
Sbjct: 170 FTERELDVMKQIAKGLSNKEIAKKLFISEGTVANYITSILNKTALEHRTQIAIY 223


>gi|29833019|ref|NP_827653.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610140|dbj|BAC74188.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 6/81 (7%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL+  +AN  +      G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++
Sbjct: 136 LLSQEEANSGQ------GRGGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSN 189

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A  +AVR+ 
Sbjct: 190 ILMKLDLADRTQAALWAVRHG 210


>gi|88807455|ref|ZP_01122967.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
 gi|88788669|gb|EAR19824.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
          Length = 261

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +  G T+ EIA  L +S  TV ++++S++RK   K R+ A+  A R  
Sbjct: 190 DLTMREEDVLRGLCRGMTNLEIAEDLLVSIETVKSHVSSLLRKLPAKDRTAAVVTAFREG 249

Query: 245 IV 246
           +V
Sbjct: 250 LV 251


>gi|328885899|emb|CCA59138.1| transcriptional regulator, LuxR family [Streptomyces venezuelae
           ATCC 10712]
          Length = 244

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D H      L  RE + L  +SEG  + EIA     S  TV N +  ++ +   + R+
Sbjct: 173 ALDPHAASLSTLAPREADMLRLVSEGLDTAEIARKTSYSERTVKNVLHEVITRLQLRNRT 232

Query: 235 GAIAYAVRNNIV 246
            A+ YA+RN ++
Sbjct: 233 HAVGYALRNGLI 244


>gi|318061656|ref|ZP_07980377.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076898|ref|ZP_07984230.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 214

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  L+ RE E L + ++G    EIA   G+S  TV NY++S + K   + R 
Sbjct: 143 AADAIAAGDSPLSAREAEVLEYAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRH 202

Query: 235 GAI 237
            A+
Sbjct: 203 AAV 205


>gi|229009028|ref|ZP_04166367.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228752198|gb|EEM01887.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 201

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +D  LT REVE L  +  G T+ EI   L ++  TV NY++S ++K   ++R  AI  A
Sbjct: 137 EDNPLTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIA 195


>gi|218892898|ref|YP_002441767.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218773126|emb|CAW28938.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G    L+ RE E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+
Sbjct: 173 VSAGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232

Query: 238 AYAVR 242
           A A+R
Sbjct: 233 ARALR 237


>gi|295837594|ref|ZP_06824527.1| two-component system response regulator TcsR2 [Streptomyces sp.
           SPB74]
 gi|295826582|gb|EDY45254.2| two-component system response regulator TcsR2 [Streptomyces sp.
           SPB74]
          Length = 214

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 33/66 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  L+ RE E L + ++G    EIA   G+S  TV NY++S + K   + R 
Sbjct: 143 AADAIAAGDSPLSAREAEVLEYAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRH 202

Query: 235 GAIAYA 240
            A+  A
Sbjct: 203 AAVRAA 208


>gi|285017693|ref|YP_003375404.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283472911|emb|CBA15416.1| probable two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A
Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 207


>gi|258508232|ref|YP_003170983.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus GG]
 gi|257148159|emb|CAR87132.1| Two-component response regulator, LuxR family [Lactobacillus
           rhamnosus GG]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN
Sbjct: 141 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 198


>gi|229547584|ref|ZP_04436309.1| LuxR family response regulator [Enterococcus faecalis TX1322]
 gi|256852497|ref|ZP_05557873.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           T8]
 gi|229307274|gb|EEN73261.1| LuxR family response regulator [Enterococcus faecalis TX1322]
 gi|256712351|gb|EEU27383.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           T8]
          Length = 210

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++GK++ EIA  L I+  TV  ++++I+ K     R+ A  YA ++ 
Sbjct: 148 DLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|255034530|ref|YP_003085151.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254947286|gb|ACT91986.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 210

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S +    KD+ LT RE + L ++ +G +   IA    IS NTVNN+I +I  K    + +
Sbjct: 139 SAESEAKKDYHLTEREKQILGFLVKGYSYKLIAAECTISYNTVNNHIRNIYDKLYVNSAT 198

Query: 235 GAIAYAVRNNIV 246
            A++ A++  +V
Sbjct: 199 EAVSLAIKERLV 210


>gi|51893278|ref|YP_075969.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51856967|dbj|BAD41125.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 197

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG T+ EIA  L IS  TV  + ++++ K     R+  + YA+R  +
Sbjct: 135 LTPREREILVLIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIHDRTELVRYAIRQGL 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|15596333|ref|NP_249827.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100589|ref|ZP_01364507.1| hypothetical protein PaerPA_01001614 [Pseudomonas aeruginosa PACS2]
 gi|254239506|ref|ZP_04932828.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192]
 gi|9947056|gb|AAG04525.1|AE004543_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126192884|gb|EAZ56947.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G    L+ RE E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+
Sbjct: 173 VSAGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232

Query: 238 AYAVR 242
           A A+R
Sbjct: 233 ARALR 237


>gi|227489471|ref|ZP_03919787.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227090649|gb|EEI25961.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 280

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 218 KLSARELDVLSCVALGHTNVEAAKEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 275


>gi|226305790|ref|YP_002765750.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184907|dbj|BAH33011.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 212

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + L  ++EGK++ EIA  L +   TV  ++A++M KT    R     Y ++N
Sbjct: 153 LTDRESQVLALVAEGKSNQEIADTLHLGVTTVKTHVANLMSKTGCDNRVRLAVYHLQN 210


>gi|15896670|ref|NP_350019.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026518|gb|AAK81359.1|AE007840_3 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
          Length = 217

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+  L  I+ G  S EIA  +GIS  TV  ++ +I  K    +RS A+A A+   I
Sbjct: 153 ITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKGI 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|90426293|ref|YP_534663.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisB18]
 gi|90108307|gb|ABD90344.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB18]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +I L AA    M K  D    +   LT ++V  L  +SEG  + +IA  LG+S  T+  +
Sbjct: 134 DIDLNAASDPEMTKLRD----RLITLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAH 189

Query: 221 IASIMRKTATKTRSGAIAYAVR 242
           +++I++K   ++R+ A+  A +
Sbjct: 190 VSAILQKLGVESRTQAVIAAAK 211


>gi|290962906|ref|YP_003494088.1| response regulator [Streptomyces scabiei 87.22]
 gi|260652432|emb|CBG75565.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  ++EG +S EIA +L IS  TV  + A+++ K   + R     YA+R  +
Sbjct: 157 ITEREEEILKLVAEGHSSREIARLLVISVKTVERHRANLLHKLGLRDRLDLTRYAIRTGL 216


>gi|228991209|ref|ZP_04151167.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
 gi|228768433|gb|EEM17038.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 172 MFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +FK Y     K  +ELT RE++ L  + EG    EIA  L +S  TV NY +SI  K   
Sbjct: 363 LFKEYSSMPKKPPYELTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQV 422

Query: 231 KTRSGAIAYAV 241
             R  A+  A+
Sbjct: 423 SGRGEAVKKAL 433


>gi|227833967|ref|YP_002835674.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183544|ref|ZP_06042965.1| transcriptional regulator, LuxR family protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454983|gb|ACP33736.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 279

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A 
Sbjct: 214 QSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAAR 273

Query: 242 R 242
           R
Sbjct: 274 R 274


>gi|224026499|ref|ZP_03644865.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM
           18228]
 gi|224019735|gb|EEF77733.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM
           18228]
          Length = 194

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + EL+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ SG   YAV
Sbjct: 126 EHELSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLAIYAV 184


>gi|206562366|ref|YP_002233129.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198038406|emb|CAR54363.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 510

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           P  +  R C L    D++  +   M L       ++D  W    L    AN+ ++     
Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +
Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484

Query: 240 AVRNNIV 246
           A    IV
Sbjct: 485 ARERGIV 491


>gi|158312386|ref|YP_001504894.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158107791|gb|ABW09988.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 201

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L   + G   +EIA  L +SR TV NY++S + K     R  A+  A
Sbjct: 138 DSPLTPREAEVLELAAGGAPVEEIAARLSLSRGTVRNYLSSAVAKLGAVNRHEAVQLA 195


>gi|332188808|ref|ZP_08390518.1| sigma-70, region 4 family protein [Sphingomonas sp. S17]
 gi|332011161|gb|EGI53256.1| sigma-70, region 4 family protein [Sphingomonas sp. S17]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E + WI+ G+   ++A +LG+S  T+ N++  I  +    + + AI   VR+ 
Sbjct: 176 QLSAREREVIRWIASGRRQADVAALLGLSERTIENHLRRIRNRLGAASTAQAIHLLVRSG 235


>gi|328463247|gb|EGF34958.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 201

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN
Sbjct: 141 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 198


>gi|313106105|ref|ZP_07792362.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310878864|gb|EFQ37458.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G    L+ RE E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+
Sbjct: 173 VSAGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232

Query: 238 AYAVR 242
           A A+R
Sbjct: 233 ARALR 237


>gi|307610791|emb|CBX00405.1| hypothetical protein LPW_21241 [Legionella pneumophila 130b]
          Length = 267

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE++CL+ IS+G T  +I+  L +S  TVN +  SI  K +    + A++ A R
Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFR 262


>gi|289680012|ref|ZP_06500902.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 73

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R  
Sbjct: 9   QLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 68

Query: 245 IV 246
           ++
Sbjct: 69  VI 70


>gi|302543141|ref|ZP_07295483.1| putative response regulator [Streptomyces hygroscopicus ATCC 53653]
 gi|302460759|gb|EFL23852.1| putative response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG  + EIA  L  S  TV N +  +  +   + R+ A+AYA+R   
Sbjct: 152 LTPREIDVLRLVAEGMGTGEIASKLSYSERTVKNIMQGLTTRLDLRNRAHAVAYALREGY 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|256377037|ref|YP_003100697.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921340|gb|ACU36851.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 208

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +SEG  + EIAV +  S  TV N +  +  +   + R+ A+ Y +R+ +
Sbjct: 148 LTPREADMLRLVSEGFGTAEIAVKMSFSERTVKNVLHEVTTRLNLRNRAHAVGYVMRHGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|289208427|ref|YP_003460493.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288944058|gb|ADC71757.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp.
           K90mix]
          Length = 232

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L  +  G+T+  IA  L IS +TV +++ +I RK   K R+ AI +A
Sbjct: 155 LTQRELEILAMLGSGETNMNIAKQLFISEHTVKSHLYNIFRKIEVKNRTQAINWA 209


>gi|223934624|ref|ZP_03626544.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896579|gb|EEF63020.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 29/53 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ELT RE E L  ++ G T  E+A  L IS  TV NYI  I  K    TR+ A+
Sbjct: 162 ELTAREREVLELLARGATPKEVAAELNISWQTVRNYIRFIYDKLHVHTRTDAV 214


>gi|67923468|ref|ZP_00516945.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
 gi|67854703|gb|EAM49985.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
          Length = 94

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 155 LRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +   L +   L  ++AN+   +   +H     ELT  E + +  +++G ++ E+A  L +
Sbjct: 1   MESSLKQANRLMLHKANLSLDEGSRIHVPNHVELTPTETKVVQLVAKGLSNREVAEKLSV 60

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           SR T+ +++++++ KT+ K R+    +A+ N++ 
Sbjct: 61  SRRTIESHVSNMLNKTSLKNRTELARWAMENSMA 94


>gi|310659628|ref|YP_003937349.1| transcriptional regulator yhcz [Clostridium sticklandii DSM 519]
 gi|308826406|emb|CBH22444.1| putative transcriptional regulator YhcZ [Clostridium sticklandii]
          Length = 222

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 182 KDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           KDF+L T RE E +  IS+GK++ EIA  L +S  TV N+I +I++K   + R+      
Sbjct: 152 KDFDLLTRREYEIVGLISQGKSNLEIADDLFLSERTVKNHIHNILKKVNLQDRTQIAIAN 211

Query: 241 VRNNIV 246
           +R  IV
Sbjct: 212 LRYRIV 217


>gi|302520212|ref|ZP_07272554.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|318062155|ref|ZP_07980876.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|302429107|gb|EFL00923.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 224

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 179 HWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H G  + ELT RE E L  ++ G ++ EIA  L ++ +TV  +++ ++ K   + R+ A 
Sbjct: 153 HPGGAYGELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAA 212

Query: 238 AYAVRNNIV 246
            +A  N +V
Sbjct: 213 VFAYENRLV 221


>gi|315030865|gb|EFT42797.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
          Length = 206

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++GK++ EIA  L I+  TV  ++++I+ K     R+ A  YA ++ 
Sbjct: 144 DLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 203

Query: 245 I 245
           +
Sbjct: 204 L 204


>gi|308176449|ref|YP_003915855.1| helix-turn-helix domain-containing protein [Arthrobacter
           arilaitensis Re117]
 gi|307743912|emb|CBT74884.1| helix-turn-helix domain-containing protein [Arthrobacter
           arilaitensis Re117]
          Length = 432

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ L GRE E L  ++ G+ +  I+  LGIS NTV  ++ ++ +K    +R+ A+A A
Sbjct: 366 EWSLGGREFEVLQLLAAGQRNRAISQALGISENTVKFHVRNLFKKMGVGSRAQAVALA 423


>gi|302561540|ref|ZP_07313882.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302479158|gb|EFL42251.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|302536569|ref|ZP_07288911.1| two-component system response regulator [Streptomyces sp. C]
 gi|302445464|gb|EFL17280.1| two-component system response regulator [Streptomyces sp. C]
          Length = 232

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 33/61 (54%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           VH    F L+ REVE +  I+ G  + +IA    IS  TV N+I  I  K  + +RS AI
Sbjct: 158 VHNSVVFGLSSREVEIMDLIASGMNNQQIAGACFISEKTVKNHINRIFAKLQSTSRSEAI 217

Query: 238 A 238
           A
Sbjct: 218 A 218


>gi|239983271|ref|ZP_04705795.1| response regulator [Streptomyces albus J1074]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    LT REV+ +  I+EG  + EIA  L  S  TV N I  +  +   + R+ A+A
Sbjct: 135 QGGPSLGLTPREVDVVRLIAEGLDTGEIAGKLSYSERTVKNVIHGVTTRLHLRNRAHAVA 194

Query: 239 YAVRNN 244
           +A+R  
Sbjct: 195 FALREG 200


>gi|228918188|ref|ZP_04081692.1| Response regulator receiver [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841468|gb|EEM86607.1| Response regulator receiver [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 592

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G ++ LT RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A
Sbjct: 526 GIEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKA 585


>gi|199597520|ref|ZP_03210949.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591543|gb|EDY99620.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN
Sbjct: 141 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 198


>gi|297202175|ref|ZP_06919572.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713613|gb|EDY57647.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 205

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A
Sbjct: 145 LTDREREVLRAAADGSTNAELAQTLHLSQGTVRNYLSTAIQKLAVRNRAEAVRIA 199


>gi|148241325|ref|YP_001226482.1| transcriptional regulator [Synechococcus sp. RCC307]
 gi|147849635|emb|CAK27129.1| ranscriptional regulator, luxR family [Synechococcus sp. RCC307]
          Length = 92

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  ++   T+ EIA+ L IS+ TV+N++++I  KT ++ R   + +A+ N
Sbjct: 16  IHLSERELEIIELVAAELTNQEIALRLSISKRTVDNHVSNIFTKTGSRNRVALVNWALSN 75


>gi|307327290|ref|ZP_07606477.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886969|gb|EFN17968.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 172 MFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           M  + D H        ELTGRE E +   +EG+++ EIA IL +S  TV  +I   M K 
Sbjct: 142 MSPAPDAHLAPPERLSELTGREREVMGLAAEGRSNTEIAEILTLSPLTVRTHIHRAMTKL 201

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + R+  +  A +  + 
Sbjct: 202 GARDRAQLVVIAYQTGLA 219


>gi|297243640|ref|ZP_06927571.1| response regulator of two-component system [Gardnerella vaginalis
           AMD]
 gi|296888391|gb|EFH27132.1| response regulator of two-component system [Gardnerella vaginalis
           AMD]
          Length = 260

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N 
Sbjct: 197 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENG 256

Query: 245 IV 246
           +V
Sbjct: 257 LV 258


>gi|295696008|ref|YP_003589246.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295411610|gb|ADG06102.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++EG ++ E+A  L I   TV  ++ +I+ K   + R+ A+ YA ++ 
Sbjct: 157 QLTDREREVLLLLAEGYSNQEVADALHIGVKTVKFHVTNILDKLQVEDRTQAVIYAYKHG 216

Query: 245 IV 246
           +V
Sbjct: 217 LV 218


>gi|229131918|ref|ZP_04260783.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196]
 gi|228651509|gb|EEL07479.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196]
          Length = 207

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +K  +VH  K  E  LT +E+  L  I+ G  + EIA  +GI+  TV  ++ +I  K   
Sbjct: 130 YKRKEVHADKVAENNLTDKELFVLKAIARGYKNKEIAFDMGIAERTVKAHLTNIYNKLGV 189

Query: 231 KTRSGAIAYAVRNNIV 246
            +RS A+A ++   ++
Sbjct: 190 NSRSEAVAVSIERKLI 205


>gi|291287073|ref|YP_003503889.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884233|gb|ADD67933.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 193

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT RE E L  I+ GKTS EI  +L IS+NTV+ +   +++K      +  + YA 
Sbjct: 129 RNGSLTSRECEILKLIASGKTSREIGEMLCISKNTVDTHRNKMLQKLNLANSASLVHYAF 188

Query: 242 RNNIV 246
            + +V
Sbjct: 189 VSGLV 193


>gi|108798589|ref|YP_638786.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119867689|ref|YP_937641.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|108769008|gb|ABG07730.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119693778|gb|ABL90851.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
          Length = 163

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  I  G ++ EIA  L IS  TV ++I  I  K   + R+ AI Y+  + 
Sbjct: 99  DLTTRELDVLRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHG 158

Query: 245 IV 246
           IV
Sbjct: 159 IV 160


>gi|83954912|ref|ZP_00963590.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. NAS-14.1]
 gi|83840638|gb|EAP79810.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. NAS-14.1]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E LT IS+G  + E+A  L I+  TV  YI  + RK    +R+ A  +A R
Sbjct: 146 DGRLTERETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGISSRAEAAWHANR 205


>gi|116691570|ref|YP_837103.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649570|gb|ABK10210.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
          Length = 510

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           P  +  R C L    D++  +   M L       ++D  W    L    AN+ ++     
Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +
Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484

Query: 240 AVRNNIV 246
           A    IV
Sbjct: 485 ARERGIV 491


>gi|319442522|ref|ZP_07991678.1| LuxR family transcriptional regulator [Corynebacterium variabile
           DSM 44702]
          Length = 281

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 219 KLSARELDVLSCVALGHTNVEAADEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 276


>gi|284041678|ref|YP_003392018.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945899|gb|ADB48643.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 435

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 31/45 (68%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           D+ LT R++E    ++ G T+ E+A +LGIS +TVN ++ +I R+
Sbjct: 362 DYGLTVRQLEIARLVASGSTNREVAELLGISDHTVNTHLRAIFRR 406


>gi|295680777|ref|YP_003609351.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440672|gb|ADG19840.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 222

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           +LA   A    S      + FE LT RE+E L  +++G  + EIA  L IS NTV  +++
Sbjct: 137 ILARLLAETRPSRQKAPAEPFEALTLREIEVLAMLADGLGNKEIARQLDISDNTVKFHLS 196

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           SI  K     R+ A+   +R+  +
Sbjct: 197 SIFGKLGATNRTEAVMLGMRHGFI 220


>gi|172041269|ref|YP_001800983.1| LuxR family transcriptional regulator [Corynebacterium urealyticum
           DSM 7109]
 gi|171852573|emb|CAQ05549.1| putative transcriptional regulator (LuxR family) [Corynebacterium
           urealyticum DSM 7109]
          Length = 291

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 229 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 286


>gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 42/92 (45%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           +R  L E  L  A  A       +      ELT RE + L  ++EG  + EIA  L  S 
Sbjct: 154 IRALLSERTLATATPAQTSAPTPLPPPIKVELTPREQQVLEKVAEGLMNKEIAKQLQTSV 213

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             V  Y+  ++ KT T +R+  + YA+   ++
Sbjct: 214 RNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 245


>gi|239932265|ref|ZP_04689218.1| two-component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291440629|ref|ZP_06580019.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343524|gb|EFE70480.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|227514972|ref|ZP_03945021.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
 gi|227086671|gb|EEI21983.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
          Length = 217

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F   DV+      L+ RE E    ++ G T+ EIA  L IS  TV  + A+I+RK   + 
Sbjct: 142 FDGVDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLEN 201

Query: 233 RSGAIAYAVRNNIV 246
           R+  + YA+ ++++
Sbjct: 202 RADLVRYAIHHHLI 215


>gi|182439488|ref|YP_001827207.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326780152|ref|ZP_08239417.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178468004|dbj|BAG22524.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660485|gb|EGE45331.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 214

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ EIA    +S  TV  ++++I+ K     R+ A  +A
Sbjct: 148 GRGSTLTEREREVLGLIADGRSNREIARAFVLSEKTVKTHVSNILMKLDVADRTQAALWA 207

Query: 241 VRNN 244
           VRN 
Sbjct: 208 VRNG 211


>gi|118471623|ref|YP_884743.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172910|gb|ABK73806.1| transcriptional regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 395

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  +  G ++ EIA  L I+  TV +++  I+RK     R+ AIA+A++  
Sbjct: 336 ELTERESEVLRLMVTGASNHEIAEQLVITEGTVKSHVKHILRKYGAVNRAQAIAWALQGT 395


>gi|116049068|ref|YP_792130.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584289|gb|ABJ10304.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G    L+ RE E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+
Sbjct: 173 VSAGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232

Query: 238 AYAVR 242
           A A+R
Sbjct: 233 ARALR 237


>gi|332670631|ref|YP_004453639.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332339669|gb|AEE46252.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484]
          Length = 144

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+  L  +++G+++  I   LG+S  TV +++A I RK  T  R+  +A + R  
Sbjct: 82  ELTAREISVLKLVADGRSNRLIGEELGLSALTVKSHLARISRKLGTGDRAELVAISFRGG 141

Query: 245 IV 246
           ++
Sbjct: 142 VL 143


>gi|330940323|gb|EGH43432.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 70

 Score = 41.6 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R  
Sbjct: 6   QLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 65

Query: 245 IV 246
           ++
Sbjct: 66  VI 67


>gi|326329284|ref|ZP_08195609.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325952859|gb|EGD44874.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 231

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  ++ G T+ EIA  L IS  TV ++I  I  K   + R+ AI +A  + 
Sbjct: 166 ELTDRELEVLRGLASGWTNSEIAERLVISELTVKSHIGRIFAKLDLRDRAAAIVFAYDHG 225

Query: 245 IV 246
           IV
Sbjct: 226 IV 227


>gi|325510834|gb|ADZ22470.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 217

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+  L  I+ G  S EIA  +GIS  TV  ++ +I  K    +RS A+A A+   I
Sbjct: 153 ITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKGI 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|258650774|ref|YP_003199930.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553999|gb|ACV76941.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 230

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G  + EIA +L +   TV  ++  ++ K   + R+ AIA+A  + +
Sbjct: 159 LTPRETEVLQLVARGHNNAEIAALLHLGETTVKTHLGRVLDKLGLRDRNKAIAFAYDSGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|228997588|ref|ZP_04157200.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228762140|gb|EEM11074.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 201

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +D  LT REVE L  +  G T+ EI   L ++  TV NY++S ++K   ++R  AI  A
Sbjct: 137 EDNPLTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIA 195


>gi|228995587|ref|ZP_04155253.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17]
 gi|229003214|ref|ZP_04161054.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4]
 gi|228758053|gb|EEM07258.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4]
 gi|228764159|gb|EEM13040.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17]
          Length = 216

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 152 QLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 211

Query: 245 I 245
           I
Sbjct: 212 I 212


>gi|29833213|ref|NP_827847.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610335|dbj|BAC74382.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|29377375|ref|NP_816529.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           V583]
 gi|227554359|ref|ZP_03984406.1| LuxR family response regulator [Enterococcus faecalis HH22]
 gi|255970859|ref|ZP_05421445.1| regulatory protein [Enterococcus faecalis T1]
 gi|255974434|ref|ZP_05425020.1| regulatory protein [Enterococcus faecalis T2]
 gi|256618304|ref|ZP_05475150.1| regulatory protein [Enterococcus faecalis ATCC 4200]
 gi|256761234|ref|ZP_05501814.1| regulatory protein [Enterococcus faecalis T3]
 gi|256958147|ref|ZP_05562318.1| regulatory protein [Enterococcus faecalis DS5]
 gi|256960293|ref|ZP_05564464.1| regulatory protein [Enterococcus faecalis Merz96]
 gi|256962729|ref|ZP_05566900.1| regulatory protein [Enterococcus faecalis HIP11704]
 gi|257077420|ref|ZP_05571781.1| regulatory protein [Enterococcus faecalis JH1]
 gi|257080715|ref|ZP_05575076.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           E1Sol]
 gi|257083389|ref|ZP_05577750.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           Fly1]
 gi|257088053|ref|ZP_05582414.1| regulatory protein [Enterococcus faecalis D6]
 gi|257091132|ref|ZP_05585493.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           CH188]
 gi|257417079|ref|ZP_05594073.1| regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257417793|ref|ZP_05594787.1| luxR family DNA-binding response regulator [Enterococcus faecalis
           T11]
 gi|257420589|ref|ZP_05597579.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|294779660|ref|ZP_06745051.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300861047|ref|ZP_07107134.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|29344842|gb|AAO82599.1| DNA-binding response regulator, LuxR family [Enterococcus faecalis
           V583]
 gi|227176505|gb|EEI57477.1| LuxR family response regulator [Enterococcus faecalis HH22]
 gi|255961877|gb|EET94353.1| regulatory protein [Enterococcus faecalis T1]
 gi|255967306|gb|EET97928.1| regulatory protein [Enterococcus faecalis T2]
 gi|256597831|gb|EEU17007.1| regulatory protein [Enterococcus faecalis ATCC 4200]
 gi|256682485|gb|EEU22180.1| regulatory protein [Enterococcus faecalis T3]
 gi|256948643|gb|EEU65275.1| regulatory protein [Enterococcus faecalis DS5]
 gi|256950789|gb|EEU67421.1| regulatory protein [Enterococcus faecalis Merz96]
 gi|256953225|gb|EEU69857.1| regulatory protein [Enterococcus faecalis HIP11704]
 gi|256985450|gb|EEU72752.1| regulatory protein [Enterococcus faecalis JH1]
 gi|256988745|gb|EEU76047.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           E1Sol]
 gi|256991419|gb|EEU78721.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           Fly1]
 gi|256996083|gb|EEU83385.1| regulatory protein [Enterococcus faecalis D6]
 gi|256999944|gb|EEU86464.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           CH188]
 gi|257158907|gb|EEU88867.1| regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257159621|gb|EEU89581.1| luxR family DNA-binding response regulator [Enterococcus faecalis
           T11]
 gi|257162413|gb|EEU92373.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|294453317|gb|EFG21728.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850086|gb|EFK77836.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|323478876|gb|ADX78315.1| response regulator [Enterococcus faecalis 62]
 gi|327536064|gb|AEA94898.1| DNA-binding response regulator [Enterococcus faecalis OG1RF]
          Length = 210

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++GK++ EIA  L I+  TV  ++++I+ K     R+ A  YA ++ 
Sbjct: 148 DLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|124266648|ref|YP_001020652.1| LuxR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124259423|gb|ABM94417.1| transcriptional regulator, LuxR family [Methylibium petroleiphilum
           PM1]
          Length = 197

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E    + EG+TS +I  +LG+S  TV+ Y A ++RK A  + +  +   VR 
Sbjct: 140 LTAREREVAALLIEGQTSKQIGKVLGVSHRTVDIYRARLLRKYAAGSTAELVNKLVRG 197


>gi|297624009|ref|YP_003705443.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297165189|gb|ADI14900.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE   L  I++G T  EIA  LGIS  TV  Y      K   KTR+  + YA+
Sbjct: 146 RHVRLTERERSVLARIAQGCTYKEIAEELGISDKTVATYRERAAEKLGLKTRAELVRYAL 205

Query: 242 RNNIV 246
           ++ ++
Sbjct: 206 QHGLI 210


>gi|288936970|ref|YP_003441029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Klebsiella variicola At-22]
 gi|288891679|gb|ADC59997.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Klebsiella variicola At-22]
          Length = 921

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D+H     EL+ RE++ L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+
Sbjct: 853 SPDIH----GELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRT 908

Query: 235 GAIAYAVRNNIV 246
            A++ A+   ++
Sbjct: 909 QAMSRALEMKLL 920


>gi|258650664|ref|YP_003199820.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553889|gb|ACV76831.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 191

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I+EG +S EIA  L IS  TV+ + A+IM+K     R     +A+R  +
Sbjct: 129 LTPREEEIVKLIAEGHSSREIADTLVISAKTVDRHRANIMQKLGMHDRLDLTRFAIRVGL 188

Query: 246 V 246
           V
Sbjct: 189 V 189


>gi|302550470|ref|ZP_07302812.1| two component response regulator [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468088|gb|EFL31181.1| two component response regulator [Streptomyces viridochromogenes
           DSM 40736]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G I+L+  + +  LL+  +AN   +      +   LT RE E L  I++G+++ EIA  L
Sbjct: 124 GHILLQPEVAD-ALLSQEEANSGPA------RAGSLTDREREVLGLIADGRSNREIARAL 176

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 177 VLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGV 211


>gi|302546669|ref|ZP_07299011.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|307330767|ref|ZP_07609903.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|302464287|gb|EFL27380.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
 gi|306883570|gb|EFN14620.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|229552033|ref|ZP_04440758.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314610|gb|EEN80583.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN
Sbjct: 142 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 199


>gi|227518222|ref|ZP_03948271.1| LuxR family response regulator [Enterococcus faecalis TX0104]
 gi|229548209|ref|ZP_04436934.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200]
 gi|293382160|ref|ZP_06628103.1| DNA-binding response regulator VraR [Enterococcus faecalis R712]
 gi|293388529|ref|ZP_06633033.1| DNA-binding response regulator VraR [Enterococcus faecalis S613]
 gi|307268836|ref|ZP_07550203.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307272676|ref|ZP_07553924.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307275104|ref|ZP_07556258.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307278542|ref|ZP_07559614.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307287394|ref|ZP_07567453.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307290831|ref|ZP_07570725.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312900387|ref|ZP_07759697.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312902923|ref|ZP_07762120.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312905744|ref|ZP_07764766.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909060|ref|ZP_07767920.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312952200|ref|ZP_07771078.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|227074318|gb|EEI12281.1| LuxR family response regulator [Enterococcus faecalis TX0104]
 gi|229306688|gb|EEN72684.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200]
 gi|291080443|gb|EFE17807.1| DNA-binding response regulator VraR [Enterococcus faecalis R712]
 gi|291082133|gb|EFE19096.1| DNA-binding response regulator VraR [Enterococcus faecalis S613]
 gi|306498140|gb|EFM67663.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306501567|gb|EFM70863.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504779|gb|EFM73977.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306508222|gb|EFM77338.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306510671|gb|EFM79693.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514840|gb|EFM83388.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310628223|gb|EFQ11506.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310629856|gb|EFQ13139.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310633695|gb|EFQ16978.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311290622|gb|EFQ69178.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311292477|gb|EFQ71033.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315028155|gb|EFT40087.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315032281|gb|EFT44213.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315036239|gb|EFT48171.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145424|gb|EFT89440.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315148783|gb|EFT92799.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151677|gb|EFT95693.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315154523|gb|EFT98539.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315156392|gb|EFU00409.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315160117|gb|EFU04134.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315163264|gb|EFU07281.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165932|gb|EFU09949.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315169340|gb|EFU13357.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315171806|gb|EFU15823.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315174757|gb|EFU18774.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315576264|gb|EFU88455.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315578904|gb|EFU91095.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315582755|gb|EFU94946.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|329573313|gb|EGG54926.1| response regulator protein VraR [Enterococcus faecalis TX1467]
          Length = 206

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++GK++ EIA  L I+  TV  ++++I+ K     R+ A  YA ++ 
Sbjct: 144 DLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 203

Query: 245 I 245
           +
Sbjct: 204 L 204


>gi|119899725|ref|YP_934938.1| LuxR family DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119672138|emb|CAL96052.1| probable DNA-binding response regulator, LuxR family [Azoarcus sp.
           BH72]
          Length = 208

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT  +   L  +++GKT+ EIA +LG+S  TV  ++++I R      R+ A+    R+
Sbjct: 145 FGLTAAQTRVLELLAQGKTNREIADLLGLSEGTVKVHMSAIFRALGVSNRAQALVVIARH 204

Query: 244 N 244
            
Sbjct: 205 G 205


>gi|94969375|ref|YP_591423.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551425|gb|ABF41349.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L  +  G+++ EI   LGI   TV  ++A +MRK   + R     +A+ +++
Sbjct: 155 FTDREKEVLELLVAGRSNKEIGSALGIEERTVKAHVAKLMRKVGVQNRIALSVHAITHSL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|56962495|ref|YP_174221.1| two-component response regulator of nitrate reduction [Bacillus
           clausii KSM-K16]
 gi|56908733|dbj|BAD63260.1| two-component response regulator of nitrate reduction [Bacillus
           clausii KSM-K16]
          Length = 215

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  I++G  + EIA  L +S  TV  + A IM K   K+R   + YA++  +
Sbjct: 153 LSQREVEILPLIAKGFGNKEIAEKLYVSVKTVEAHKAKIMEKLNLKSRPELVEYALKKKL 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|302530143|ref|ZP_07282485.1| response regulator [Streptomyces sp. AA4]
 gi|302439038|gb|EFL10854.1| response regulator [Streptomyces sp. AA4]
          Length = 204

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE + L  ++EG  ++EIA  L  S  TV N +  +M +     R+ A+AYA+R   
Sbjct: 144 LASRECDVLRLVAEGYGTEEIATKLCYSERTVKNVLYGLMTRCGLNNRAHAVAYALRAGA 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|264680819|ref|YP_003280729.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262211335|gb|ACY35433.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 214

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE++ L  +++G T+ EIA  L +SR TV  ++ +I RK A  +R+ A++ A
Sbjct: 153 LSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEA 207


>gi|290954780|ref|YP_003485962.1| luxR family regulator [Streptomyces scabiei 87.22]
 gi|260644306|emb|CBG67389.1| putative luxR family regulator [Streptomyces scabiei 87.22]
          Length = 196

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  LT R++  L  +  G T +EIA  L +S  TV NYI+S++ K   + R  A+  A
Sbjct: 131 GGDCPLTLRQLSVLEHLDRGDTMEEIADRLCLSEGTVRNYISSVVAKMGARNRIDALRIA 190


>gi|225352424|ref|ZP_03743447.1| hypothetical protein BIFPSEUDO_04044 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156931|gb|EEG70300.1| hypothetical protein BIFPSEUDO_04044 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 218

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + ++  +EG    +IA  LGIS  T+  ++ SI+RK   KT   A+A  VR+N
Sbjct: 158 LTVREEQIISLCAEGMLDRDIAEHLGISEATIRKHMQSILRKLNCKTSRQAVALWVRSN 216


>gi|205372669|ref|ZP_03225480.1| hypothetical protein Bcoam_04270 [Bacillus coahuilensis m4-4]
          Length = 223

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L+ + +G  + EIA  L I+  TV N++++I+ K   + R+ A  YAVR+ I
Sbjct: 158 LTEREWGVLSELGKGLNNREIAEALYITEGTVKNHVSNIISKLEVRDRTQAAIYAVRHGI 217


>gi|223936027|ref|ZP_03627941.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895249|gb|EEF61696.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +  L+ RE E L  +S+G    EIA  LGIS  TV+ YI  I  K   +TR+ A+A
Sbjct: 149 EHNLSTREQEVLDCLSQGFLYKEIAEKLGISYETVHTYIRRIYEKLQVRTRTEAVA 204


>gi|194364036|ref|YP_002026646.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194346840|gb|ACF49963.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           W +   LT RE   L    EG+T+ EIA  LG+S  TV NY++  + K     R
Sbjct: 134 WSQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANR 187


>gi|330973427|gb|EGH73493.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 87

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R  
Sbjct: 23  QLTAKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82

Query: 245 IV 246
           ++
Sbjct: 83  VI 84


>gi|320011731|gb|ADW06581.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 223

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K + + R  A  YA  + +
Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLSLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|258539446|ref|YP_003173945.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus Lc 705]
 gi|257151122|emb|CAR90094.1| Two-component response regulator, LuxR family [Lactobacillus
           rhamnosus Lc 705]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN
Sbjct: 141 LTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRN 198


>gi|190572437|ref|YP_001970282.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010359|emb|CAQ43967.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 200

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           W +   LT RE   L    EG+T+ EIA  LG+S  TV NY++  + K     R
Sbjct: 134 WSQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANR 187


>gi|172152203|emb|CAP91064.1| BraR protein [Burkholderia kururiensis]
          Length = 234

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  
Sbjct: 170 KLTPRERECLKWTALGKSTWEISHILNCSEAVVNFHMKNIRAKFGVNSRRAAAVIATQLG 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|159037948|ref|YP_001537201.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916783|gb|ABV98210.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 230

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G+++ EIA  L +S  TV  ++  ++ K   + R  A+  A  + +
Sbjct: 166 LTGREREVLIQVARGRSNAEIAQALSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYESGL 225

Query: 246 V 246
           +
Sbjct: 226 I 226


>gi|158315636|ref|YP_001508144.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111041|gb|ABW13238.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 249

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L  ++ G+T+ EIA  L IS +TV  +IAS+M K   + R
Sbjct: 176 LTDREEQVLATVAGGRTNSEIAADLHISLSTVKTHIASLMAKLGARNR 223


>gi|124265774|ref|YP_001019778.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124258549|gb|ABM93543.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 210

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K A    S    YA+RN 
Sbjct: 149 KLSDRELQTLVLIASGKRLSDIAAELTLSPKTVSVYRARVLEKLALTNNSELTVYAIRNG 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|317154890|ref|YP_004122938.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316945141|gb|ADU64192.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG T+ E+A  L IS  TV N+  ++M+K    +    I YA R  +
Sbjct: 153 LTAREQEVLRMLAEGMTAREVAAKLFISPKTVENHRTNLMKKLGLHSTVELIRYAARLGL 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|229821508|ref|YP_002883034.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567421|gb|ACQ81272.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 225

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L  ++ G  +DEIA  L + R TV  ++++++ K   + R  A+AYA R+ +
Sbjct: 162 LTERELVVLRLLARGLNNDEIAAELVVGRATVKTHVSNVLAKLQLRDRVQAVAYAYRHGL 221


>gi|126434190|ref|YP_001069881.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|126233990|gb|ABN97390.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 162

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  I  G ++ EIA  L IS  TV ++I  I  K   + R+ AI Y+  + 
Sbjct: 98  DLTTRELDVLRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHG 157

Query: 245 IV 246
           IV
Sbjct: 158 IV 159


>gi|158318162|ref|YP_001510670.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113567|gb|ABW15764.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           LL A +        V   + FE L+ RE++ L  ++ G ++ EIA+ L +S  TV  ++ 
Sbjct: 139 LLGALRTGAVADLAVR--RRFERLSERELQVLRAMARGASNREIAIELRVSERTVKAHVG 196

Query: 223 SIMRKTATKTRSGAIAYA 240
           SI  K   + R+GAI  A
Sbjct: 197 SIFGKLEVRDRAGAIVLA 214


>gi|94313776|ref|YP_586985.1| putative two component LuxR family transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93357628|gb|ABF11716.1| putative two component transcriptional regulator, LuxR family
           [Cupriavidus metallidurans CH34]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT R++E L  ++ G+++  IA  LG+S NTV  ++A+I+      +R  AI  A 
Sbjct: 143 KPSQLTPRQLEVLNQLNLGRSNKVIAYHLGLSENTVRVHVAAILDHLGVVSRVEAILEAQ 202

Query: 242 RNNIV 246
           R  +V
Sbjct: 203 RRGLV 207


>gi|253998458|ref|YP_003050521.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200533|ref|YP_004039191.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985137|gb|ACT49994.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312439849|gb|ADQ83955.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 214

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + LT I+ G T  EIA+ L +S  TV+ Y   ++ K   K  +    YA++NN+
Sbjct: 153 LSDREFQTLTLIASGLTVGEIALRLSLSVKTVSMYRTRLLEKMQLKHNAELTHYAIKNNL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|83943530|ref|ZP_00955989.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. EE-36]
 gi|83845762|gb|EAP83640.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. EE-36]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E LT IS+G  + E+A  L I+  TV  YI  + RK    +R+ A  +A R
Sbjct: 146 DGRLTERETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGISSRAEAAWHANR 205


>gi|298249976|ref|ZP_06973780.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547980|gb|EFH81847.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 224

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE   L  ++ G+ S EIA  LG+S  TV  ++ +I  K    +R+ A+A A+  
Sbjct: 162 VELTERERAILIAVAHGERSKEIAQHLGVSERTVKAHLTNIYTKLNVDSRASAVASALER 221

Query: 244 NIV 246
            ++
Sbjct: 222 GLL 224


>gi|302536696|ref|ZP_07289038.1| two-component system response regulator [Streptomyces sp. C]
 gi|302445591|gb|EFL17407.1| two-component system response regulator [Streptomyces sp. C]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L     G T+ E+A  LG+S+ TV NY+++ ++K A + R+ A+  A
Sbjct: 148 LTDREREVLRAAEFGATNAELASRLGLSQGTVRNYLSTAIQKLAARNRAEAVRVA 202


>gi|254524756|ref|ZP_05136811.1| two-component system response regulator, LuxR family
           [Stenotrophomonas sp. SKA14]
 gi|219722347|gb|EED40872.1| two-component system response regulator, LuxR family
           [Stenotrophomonas sp. SKA14]
          Length = 200

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           W +   LT RE   L    EG+T+ EIA  LG+S  TV NY++  + K     R
Sbjct: 134 WSQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANR 187


>gi|333026225|ref|ZP_08454289.1| putative lysine-rich arabinogalactan protein 19 [Streptomyces sp.
           Tu6071]
 gi|332746077|gb|EGJ76518.1| putative lysine-rich arabinogalactan protein 19 [Streptomyces sp.
           Tu6071]
          Length = 266

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L  ++E +T+  IA  LGIS  TV+ ++A + RK  T+ R   +  A    +
Sbjct: 206 LTPREITVLALLAEARTASAIAQRLGISPRTVHRHLAHLYRKFGTRDRLATVLRARETGV 265

Query: 246 V 246
           +
Sbjct: 266 L 266


>gi|331669588|ref|ZP_08370434.1| putative 2-component transcriptional regulator [Escherichia coli
           TA271]
 gi|331063256|gb|EGI35169.1| putative 2-component transcriptional regulator [Escherichia coli
           TA271]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT RE E L  I++GKT+ EIA  L +SR  V  +  +IM+K    +    I  
Sbjct: 80  YSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKKVETHRLNIMKKLDVHSGIELIKT 139

Query: 240 AVR 242
           A+R
Sbjct: 140 ALR 142


>gi|300728575|ref|ZP_07061933.1| transcriptional regulator [Prevotella bryantii B14]
 gi|299774144|gb|EFI70778.1| transcriptional regulator [Prevotella bryantii B14]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+E L  I++GKT+ EIA     S +T+N +  +I +K    T   A+ YA R  +
Sbjct: 146 LTSTEIEILRSIAQGKTTKEIAAERYSSIHTINTHRKNIFKKLKVNTAHEAVKYAFRAGL 205

Query: 246 V 246
           V
Sbjct: 206 V 206


>gi|226361722|ref|YP_002779500.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240207|dbj|BAH50555.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE+E L  ++ GK +  IA  LGIS +TV  ++A +++K    +R  A A A+   
Sbjct: 343 DLNPRELEVLGHLATGKRNKAIADSLGISESTVKFHVAGVLKKLGVASRGEAGAIALEAG 402

Query: 245 I 245
           I
Sbjct: 403 I 403


>gi|254492498|ref|ZP_05105670.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxidans DMS010]
 gi|224462390|gb|EEF78667.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxydans DMS010]
          Length = 215

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +S+G TS EIA +L +S  TV  Y++++ +K + K +  A++ A    I
Sbjct: 155 LSPREKEVLLLVSKGYTSKEIAKMLDLSYYTVREYVSNVYKKLSVKNKMQAVSEATLLGI 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|220908626|ref|YP_002483937.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219865237|gb|ACL45576.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA--IAYAVR 242
           ELT RE+E L  I+ G ++ EIA  L IS  TV N++ +I+ +   + R+ A  + +++R
Sbjct: 150 ELTERELEILDLIATGASNREIAQTLYISEKTVKNHVTNILSRLQLRDRTQAAILVHSLR 209

Query: 243 NN 244
           ++
Sbjct: 210 HS 211


>gi|111223193|ref|YP_713987.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111150725|emb|CAJ62426.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L  RE + L  I+EG T+ +IA  + +S  TV NY+++I+ K    +R+ A  YA R
Sbjct: 152 LGERERQILVLIAEGLTNRQIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 208


>gi|70729936|ref|YP_259675.1| sensory box transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344235|gb|AAY91841.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 495

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 154 ILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           ++RD  W    L    AN+   +S         ELT RE E L  I +G    EIA  L 
Sbjct: 396 VMRDASWFSQTLIEKLANVRNTRSAQAPAVTSAELTTREREVLGLIYQGLADKEIAAQLQ 455

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ NTV N++A++  K    +R  AI +A
Sbjct: 456 LAPNTVRNHVATLYSKLDVHSRGEAIVWA 484


>gi|297157878|gb|ADI07590.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 222

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E LT I  G T+ EIA  L ++ +TV  ++  I+ K   + R  A+ +A    +
Sbjct: 159 LTGREREVLTAIGRGWTNGEIAQRLVVAESTVKTHVGRILAKIGGRDRVQAVIFAYDTRL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|229492666|ref|ZP_04386467.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121]
 gi|229320325|gb|EEN86145.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121]
          Length = 285

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L  RE+E L  ++ G ++ EIA  LG+  NTV +Y+ S MRK     R  A+  A
Sbjct: 224 LRPREIEVLEHVARGSSNREIAEALGLLPNTVKSYLKSAMRKLHANNRIQAVLAA 278


>gi|328881294|emb|CCA54533.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 225

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|320162423|ref|YP_004175648.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996277|dbj|BAJ65048.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+  L  +++GKT+ EI   L +S  TV N+++ I+ K     R     YAV ++
Sbjct: 153 DLSERELSVLAELAKGKTNAEIGRTLHLSEKTVRNHVSVILEKLHLSNRVELATYAVEHH 212

Query: 245 I 245
           I
Sbjct: 213 I 213


>gi|297202079|ref|ZP_06919476.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297148031|gb|EDY58315.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 280

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           F+L+ RE E +  I+ G T+ +IA    IS  TV N+I  I  K  + +RS A A
Sbjct: 212 FQLSAREAEIMDLIASGMTNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAA 266


>gi|305680557|ref|ZP_07403365.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660088|gb|EFM49587.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 281

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 219 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 276


>gi|238025165|ref|YP_002909397.1| response regulator, NarL family protein [Burkholderia glumae BGR1]
 gi|237879830|gb|ACR32162.1| Response regulator, NarL-family protein [Burkholderia glumae BGR1]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE+E L  +S+G T+ EI+ +L +SR TV  +I +I +K A ++R+ A+
Sbjct: 177 LSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVRSRTQAV 228


>gi|229056740|ref|ZP_04196143.1| Sensory transduction protein ydfI [Bacillus cereus AH603]
 gi|228720587|gb|EEL72150.1| Sensory transduction protein ydfI [Bacillus cereus AH603]
          Length = 207

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 173 FKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +K  +VH  K     LT +E+  L  I+ G  + EIA  +GI+  TV  Y+ +I  K   
Sbjct: 130 YKRKEVHADKVEGNNLTEKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGV 189

Query: 231 KTRSGAIAYAVRNNIV 246
            +RS A+A ++   ++
Sbjct: 190 NSRSEAVAVSIERKLI 205


>gi|254443406|ref|ZP_05056882.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198257714|gb|EDY82022.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 224

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE + L ++ +G+++ EIA  L +S  TV +++ S+  K   + R+ A   A+
Sbjct: 157 KRQQLTERERDVLEYLIKGRSNKEIASSLYLSEETVKSHLKSLFAKLKVRDRTEAAIEAI 216

Query: 242 RNNIV 246
           R+ IV
Sbjct: 217 RHGIV 221


>gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 242

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ NN+
Sbjct: 181 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENNL 240

Query: 246 V 246
           V
Sbjct: 241 V 241


>gi|62289334|ref|YP_221127.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|82699262|ref|YP_413836.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023586|ref|YP_001934354.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|237814824|ref|ZP_04593822.1| LuxR family DNA-binding response regulator [Brucella abortus str.
           2308 A]
 gi|254696773|ref|ZP_05158601.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729682|ref|ZP_05188260.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 4
           str. 292]
 gi|260545913|ref|ZP_05821654.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260757346|ref|ZP_05869694.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761170|ref|ZP_05873513.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|62195466|gb|AAX73766.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1
           str. 9-941]
 gi|82615363|emb|CAJ10326.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Brucella melitensis biovar Abortus 2308]
 gi|189019158|gb|ACD71880.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|237789661|gb|EEP63871.1| LuxR family DNA-binding response regulator [Brucella abortus str.
           2308 A]
 gi|260097320|gb|EEW81195.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260667664|gb|EEX54604.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671602|gb|EEX58423.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G   YA+
Sbjct: 145 KSEGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAI 204

Query: 242 RNNI 245
            N +
Sbjct: 205 ENRL 208


>gi|318062308|ref|ZP_07981029.1| transcriptional regulator, LuxR family protein [Streptomyces sp.
           SA3_actG]
          Length = 266

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L  ++E +T+  IA  LGIS  TV+ ++A + RK  T+ R   +  A    +
Sbjct: 206 LTPREITVLALLAEARTASAIAQRLGISPRTVHRHLAHLYRKFGTRDRLATVLRARETGV 265

Query: 246 V 246
           +
Sbjct: 266 L 266


>gi|300788717|ref|YP_003769008.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798231|gb|ADJ48606.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE+E L+  + G+T  +IA  L +S  TV NY+A+++ K   + R  AI  A
Sbjct: 138 DCPLTPREIEILSLAARGRTVSDIASELFLSAGTVRNYLAAVVTKLNARNRVHAIRIA 195


>gi|299069943|emb|CBJ41227.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CMR15]
          Length = 252

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           L+ RE E    I +GK++ EIA ++  S NTV +Y++SIM KT  + R
Sbjct: 183 LSEREREVALLIGQGKSNAEIAQLVCKSENTVKHYLSSIMDKTGCENR 230


>gi|296390495|ref|ZP_06879970.1| transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 243

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G    L+ RE E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+
Sbjct: 173 VSSGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAV 232

Query: 238 AYAVR 242
           A A+R
Sbjct: 233 ARALR 237


>gi|302528147|ref|ZP_07280489.1| predicted protein [Streptomyces sp. AA4]
 gi|302437042|gb|EFL08858.1| predicted protein [Streptomyces sp. AA4]
          Length = 240

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  IS G T+ EIA    +S  TV +++ ++ RK   + R+ A+A     N
Sbjct: 168 ELTLRETQVLGLISIGLTNSEIAEAQSVSAETVRSHVKNVYRKLGARNRAHAVALGHLEN 227

Query: 245 IV 246
           ++
Sbjct: 228 LI 229


>gi|228989393|ref|ZP_04149382.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM
           12442]
 gi|228770340|gb|EEM18915.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM
           12442]
          Length = 216

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 152 QLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 211

Query: 245 I 245
           I
Sbjct: 212 I 212


>gi|225873707|ref|YP_002755166.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794522|gb|ACO34612.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  I +G+++ EIA  L IS  TV  +I +++ K     R+ A   A++  
Sbjct: 149 ELTARELDVLRLIVQGRSNREIAADLHISEATVKTHINNLLSKLGVSDRTQAATTALQRG 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|307153141|ref|YP_003888525.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306983369|gb|ADN15250.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+ G T+ EIA  L I+  TV  ++ +I++K   + R+ A   A++  +
Sbjct: 159 LTKRELEILALIATGHTNQEIAERLQITVGTVRVHVHTILQKLDVRDRTSAAVLAIQKGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|186474125|ref|YP_001861467.1| LuxR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196457|gb|ACC74421.1| transcriptional regulator, LuxR family [Burkholderia phymatum
           STM815]
          Length = 361

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E +  I+ G+ + +IA  LG+S  TV N+I +I  K   ++R+ AI  A
Sbjct: 297 LTRREREIVELIAGGRDNAQIAARLGLSEKTVRNHITNIFAKLEVESRAQAIVLA 351


>gi|15893532|ref|NP_346881.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023075|gb|AAK78221.1|AE007537_6 Response regulator (CheY-like recever domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325507651|gb|ADZ19287.1| Response regulator (CheY-like recever domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 165 LAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +A   +N  K    + G + + LT RE+E L  I +G ++ EIA  L +S  TV NYI S
Sbjct: 128 VAKTISNFIKEDKSNNGLEQYNLTEREMEVLRNIGDGLSNKEIASKLYLSEGTVRNYITS 187

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           ++ K   + R+    + ++N
Sbjct: 188 LLEKLELRDRTQLAIFYLKN 207


>gi|299531936|ref|ZP_07045336.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|298720111|gb|EFI61068.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 214

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE++ L  +++G T+ EIA  L +SR TV  ++ +I RK A  +R+ A++ A
Sbjct: 153 LSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEA 207


>gi|271969348|ref|YP_003343544.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270512523|gb|ACZ90801.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+ REVE L   SEG    EIA  L +++ TV NY+ +I+ K   + R  A+  A
Sbjct: 137 GRRNPLSPREVEVLRMASEGAEPAEIASRLHLTKGTVRNYLGAIVTKLDARNRLDAVRIA 196


>gi|226362289|ref|YP_002780067.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240774|dbj|BAH51122.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 75

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  ++ GK +  IA  LGIS +TV  ++AS+++K     R  A A  +R  I
Sbjct: 4   LNPRELEVLAHLTVGKRNKAIASELGISESTVKFHVASVLQKLDVTNRGEAGAIGIRAGI 63


>gi|218658799|ref|ZP_03514729.1| conjugal transfer transcriptional regulator protein [Rhizobium etli
           IE4771]
          Length = 108

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 26/36 (72%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           L+ RE+ CL W ++GKT+ E A++ GI+  TV +Y+
Sbjct: 48  LSPREMTCLLWATKGKTAPETAMLTGINARTVQHYL 83


>gi|11467319|ref|NP_043176.1| putative OmpR transcriptional regulator [Cyanophora paradoxa]
 gi|1351750|sp|P48359|YCF29_CYAPA RecName: Full=Probable transcriptional regulator ycf29
 gi|1016120|gb|AAA81207.1| putative OmpR transcriptional regulator [Cyanophora paradoxa]
          Length = 210

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  + EG  + +IA  L IS   V  Y++ +  KT T+ R+  + YA+ NN++
Sbjct: 150 TPREQSVLNLVVEGLLNKQIAANLNISIRIVEKYVSRLFIKTKTRNRAELVKYALENNLI 209


>gi|325520456|gb|EGC99559.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 510

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489

Query: 245 IV 246
           IV
Sbjct: 490 IV 491


>gi|302535348|ref|ZP_07287690.1| two-component system regulator [Streptomyces sp. C]
 gi|302444243|gb|EFL16059.1| two-component system regulator [Streptomyces sp. C]
          Length = 223

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L+ I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A    
Sbjct: 157 ELTERETEVLSLIAQGLSNGEIATHLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETG 216

Query: 245 IV 246
           +V
Sbjct: 217 LV 218


>gi|239831204|ref|ZP_04679533.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239823471|gb|EEQ95039.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE + L  ++EG ++ EIA+ LGIS  TV  +  +I +K    + +G   YA+
Sbjct: 145 KSEGLSVRENDVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGLTRYAI 204

Query: 242 RNNI 245
            N +
Sbjct: 205 ENRL 208


>gi|238792074|ref|ZP_04635710.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
 gi|238728705|gb|EEQ20223.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 12/124 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180
           G+D R   LT   AR  +  M+       +L+D   EI L     AA+  N+F +    +
Sbjct: 69  GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRRAAHGENVFSNEVAQY 128

Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 129 LSSRHEEINPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 188

Query: 233 RSGA 236
           R  A
Sbjct: 189 RVAA 192


>gi|237718329|ref|ZP_04548810.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|229452262|gb|EEO58053.1| transcriptional regulator [Bacteroides sp. 2_2_4]
          Length = 255

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 12/93 (12%)

Query: 162 IGLLAAYQANMFKS--YDVHWGK----------DFELTGREVECLTWISEGKTSDEIAVI 209
           I + A++++ + KS  Y+   G+          D  LT RE+E L  + +G  S EIA  
Sbjct: 157 IDVDASHESEIIKSHLYNFKTGEQIFIDLSDTLDEPLTNRELEVLRLMKQGLLSKEIANT 216

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L +S NTVN +  +I++K        A+ +A R
Sbjct: 217 LKVSINTVNTHRQNILQKLKANNSIEAVNFAQR 249


>gi|194289374|ref|YP_002005281.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223209|emb|CAQ69214.1| putative TRANSCRIPTIONAL REGULATOR; LuxR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 225

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELT RE E    + EGKTS +I  +L IS  TV+ Y A +M+K    T
Sbjct: 167 ELTAREREIAAQLVEGKTSKQIGKLLAISPRTVDIYRARLMKKYGAST 214


>gi|187250721|ref|YP_001875203.1| two component LuxR family transcriptional regulator [Elusimicrobium
           minutum Pei191]
 gi|186970881|gb|ACC97866.1| Two-component transcriptional regulator, LuxR family
           [Elusimicrobium minutum Pei191]
          Length = 215

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E + L  I+EG +S EIA   G+S NTV+ +  +IMRK     ++  + YA++  I
Sbjct: 153 LTPKEKQILQLIAEGFSSKEIAKEFGLSLNTVHVHRNNIMRKLDIHKQAELVRYAIKEGI 212


>gi|146297802|ref|YP_001192393.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146152220|gb|ABQ03074.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 221

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I + KT+ EIA  L +S  TV  +  +++ KT ++  +G + YA++N I
Sbjct: 157 LSPREIEILQLICQQKTTSEIAEHLFLSPRTVEGHRNNLLLKTESRNIAGLVVYAIQNEI 216


>gi|26417542|gb|AAM75413.1| transcriptional regulator PpuR [Pseudomonas putida]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LRD   E G+L   +A +  S  VH      LT RE E L W + GKT+ EI++IL  +
Sbjct: 154 LLRDYAME-GML---KARIECSTPVH------LTSREKEVLQWSAAGKTTWEISMILSCT 203

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + ++ +  +I RK    +R  A+  A++   +
Sbjct: 204 TSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSI 236


>gi|294811706|ref|ZP_06770349.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324305|gb|EFG05948.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 253

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 187 LTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 246

Query: 246 V 246
           V
Sbjct: 247 V 247


>gi|256822565|ref|YP_003146528.1| two component LuxR family transcriptional regulator [Kangiella
           koreensis DSM 16069]
 gi|256796104|gb|ACV26760.1| two component transcriptional regulator, LuxR family [Kangiella
           koreensis DSM 16069]
          Length = 214

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L +IS+G ++  IA  L I+ +TV  ++  +++K   K+R  A  +AV N +
Sbjct: 154 LTNRETQILRYISQGDSNKVIARKLEIAESTVKVHVKHLLKKINLKSRIEAALFAVENKL 213


>gi|229818603|ref|YP_002880129.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564516|gb|ACQ78367.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 221

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG ++DEIA  L +S +TV  +++  M K A + R+  +  A  + +
Sbjct: 155 LTDREREVLVTVAEGLSNDEIAAKLFLSPSTVKTHVSRTMTKLAARDRAQLVVAAYESGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|261410000|ref|YP_003246241.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261286463|gb|ACX68434.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 201

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L    EG T+ +I+  L ++R TV NY++S ++K    +R  A+  A
Sbjct: 141 LSEREIEMLRLTKEGMTTGDISKALFLTRGTVRNYLSSAIQKLEADSRQQAVTIA 195


>gi|114765358|ref|ZP_01444475.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114542338|gb|EAU45367.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius sp. HTCC2601]
          Length = 255

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT  +IA I+G+++ T+  ++         +T + A+A A   N
Sbjct: 190 LTKRQREALEWVGDGKTMQDIAAIMGLTQATIEKHLRLAREALNVETTAQAVAKAAFQN 248


>gi|289644902|ref|ZP_06476947.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289505287|gb|EFD26341.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 222

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E L  I+EG T+ +IA  + +S  TV NY+++I+ K    +R+ A  YA +
Sbjct: 152 LSEREREILLLIAEGLTNRQIASRIHLSDKTVKNYVSAILDKLELTSRTQAAVYATK 208


>gi|267027596|gb|ACY78510.1| LuxR type regulator [Corynebacterium stationis]
          Length = 279

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A 
Sbjct: 214 QSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAAR 273

Query: 242 R 242
           R
Sbjct: 274 R 274


>gi|290956780|ref|YP_003487962.1| luxR-type transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260646306|emb|CBG69401.1| putative luxR-type transcriptional regulator [Streptomyces scabiei
           87.22]
          Length = 293

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E LT ++ G T+ E+A  L IS  TV + + S MRK   + R   +A A
Sbjct: 232 LTEREREILTKVATGATNREVAAALSISAETVKSSLTSSMRKFGVRNRVALVAAA 286


>gi|225022291|ref|ZP_03711483.1| hypothetical protein CORMATOL_02330 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944952|gb|EEG26161.1| hypothetical protein CORMATOL_02330 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 282

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 220 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 277


>gi|254392737|ref|ZP_05007910.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294811849|ref|ZP_06770492.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440412|ref|ZP_08215146.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706397|gb|EDY52209.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324448|gb|EFG06091.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 214

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +A
Sbjct: 148 GRGSTLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 207

Query: 241 VRNNI 245
           VR+ +
Sbjct: 208 VRHGL 212


>gi|163755753|ref|ZP_02162871.1| phosphoglyceromutase [Kordia algicida OT-1]
 gi|161324274|gb|EDP95605.1| phosphoglyceromutase [Kordia algicida OT-1]
          Length = 225

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I   KT+ EI   L I+  TV  + +++  KT  +  +G + YA++NN 
Sbjct: 157 LTEREIEVLKLICFQKTAKEIGEQLFITPRTVEGHKSNLFIKTEARNIAGLVIYAIQNNY 216

Query: 246 V 246
           +
Sbjct: 217 I 217


>gi|113867349|ref|YP_725838.1| LuxR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526125|emb|CAJ92470.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16]
          Length = 181

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELT RE E    + EGKTS +I  +L IS  TV+ Y A +M+K    T
Sbjct: 123 ELTAREREIAAQLVEGKTSKQIGKLLAISPRTVDIYRARLMKKYGAST 170


>gi|91789053|ref|YP_550005.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698278|gb|ABE45107.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 895

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  + EG  + EIA  L  S  TV++++A++  K    +R+ A+A A+   
Sbjct: 824 QLTAREIEVLLLLCEGLKNSEIAERLCRSVRTVDHHLAAVFTKLGVASRTEAVAAALHAG 883

Query: 245 I 245
           I
Sbjct: 884 I 884


>gi|330821495|ref|YP_004350357.1| Response regulator, NarL-family protein [Burkholderia gladioli
           BSR3]
 gi|327373490|gb|AEA64845.1| Response regulator, NarL-family protein [Burkholderia gladioli
           BSR3]
          Length = 236

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE+E L  +S+G T+ EI+ +L +SR TV  +I +I +K A ++R+ A+
Sbjct: 175 LSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVRSRTQAV 226


>gi|302528200|ref|ZP_07280542.1| predicted protein [Streptomyces sp. AA4]
 gi|302437095|gb|EFL08911.1| predicted protein [Streptomyces sp. AA4]
          Length = 1174

 Score = 41.2 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 179  HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            H G    L+ RE +    + +G+T+ EIA +L +SR TV  ++A+++RK   ++R
Sbjct: 1114 HRGAGSGLSPREEQVEQLVLDGRTNQEIADVLFLSRRTVEEHVANVLRKRGVRSR 1168


>gi|194295673|gb|ACF40862.1| response DNA binding regulatory protein [Streptomyces albus]
          Length = 212

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE + LT I++G T D++A  L ISR+TV+ Y+  + RK
Sbjct: 148 LSARERQVLTGIAKGLTHDQVAYRLQISRHTVDTYVKRVRRK 189


>gi|333027222|ref|ZP_08455286.1| putative response regulator [Streptomyces sp. Tu6071]
 gi|332747074|gb|EGJ77515.1| putative response regulator [Streptomyces sp. Tu6071]
          Length = 247

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G L +    + +      G    L  RE + L  ++EG  + EIA  L  S  TV N +
Sbjct: 163 LGRLISQVGTLHRGNGAAGGTTLGLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVM 222

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             +  +   + R+ A+AYA+R   +
Sbjct: 223 HGLTTRLHLRNRAHAVAYALRQGYI 247


>gi|225175001|ref|ZP_03728998.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169641|gb|EEG78438.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 205

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ELT RE+E L ++S G  + +IA  L IS +TV  ++  I+ K   + R+ A  Y V
Sbjct: 143 ELTTREMEVLKFLSRGLNNKKIAEDLFISEHTVKKHVGQILTKLELQDRTQAALYGV 199


>gi|153003783|ref|YP_001378108.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027356|gb|ABS25124.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG  +  IA  LGIS +T   ++ +I+ K   ++R+ AI  A R  +
Sbjct: 140 LTRREREVLALLAEGLANKAIAARLGISEHTAKFHVNAILGKLGVESRAEAIVRAARLGL 199

Query: 246 V 246
           V
Sbjct: 200 V 200


>gi|257064489|ref|YP_003144161.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792142|gb|ACV22812.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 258

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  I++G+++ EIA I+GIS  TV  +++ I  K    +R+  IA
Sbjct: 199 LTPREQEVLVHITDGRSNAEIARIMGISEATVKKHVSHIFDKYNVFSRTELIA 251


>gi|126739109|ref|ZP_01754803.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
 gi|126719726|gb|EBA16434.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
          Length = 214

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 147 LTGREQTILLELAQGKSNKEVALHLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 241

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 172 MFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           M    D    KD  L   T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT
Sbjct: 163 MLAHGDGSSSKDVALHNFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKT 222

Query: 229 ATKTRSGAIAYAVRNNIV 246
            T +R+  + YA+ N +V
Sbjct: 223 GTSSRTELVRYALENQLV 240


>gi|260462698|ref|ZP_05810904.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319782267|ref|YP_004141743.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259031604|gb|EEW32874.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317168155|gb|ADV11693.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 240

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W + GKTS E + ILG++  TV  +           T + AI  AVR  +
Sbjct: 178 LTEREKEVLLWAAAGKTSSETSQILGLAERTVKWHATRAREAFGVATTTQAIVEAVRRRM 237

Query: 246 V 246
           +
Sbjct: 238 I 238


>gi|300780522|ref|ZP_07090378.1| LuxR family transcriptional regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300534632|gb|EFK55691.1| LuxR family transcriptional regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 280

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 218 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 275


>gi|257791584|ref|YP_003182190.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257475481|gb|ACV55801.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 487

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            K+F L+GRE E L  I+ G T++ +A  L IS  TVN ++  I  K     RS  + Y
Sbjct: 421 AKEFSLSGREAEILVLIARGYTTNNMAEKLVISPYTVNTHVRHIYEKMQIHKRSELLNY 479


>gi|288572878|ref|ZP_06391235.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568619|gb|EFC90176.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 216

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ELT RE E L  ++EG+++ EIA  L +S  TV N+  S+M K      +    YA+R
Sbjct: 149 MELTPREWEILQLVAEGRSTREIASSLNLSAKTVENHRQSVMNKLDLHNVADLTKYAIR 207


>gi|217979469|ref|YP_002363616.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
 gi|217504845|gb|ACK52254.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 174 KSYDVHW-GKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           ++ D+H  G   +L   T RE+E L  +++GK   EIA+++ IS +TV  ++ S   K  
Sbjct: 161 RACDIHGEGHTIDLSTITRREIEALALVAQGKKPGEIAMLMRISNDTVKAHLDSARDKLQ 220

Query: 230 TKTRSGAIAYAVRNNIV 246
              R  A A A+R  ++
Sbjct: 221 ALNRVHAAAKALRAGLI 237


>gi|134099595|ref|YP_001105256.1| putative transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291009580|ref|ZP_06567553.1| putative transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133912218|emb|CAM02331.1| putative transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 285

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           R RL E+           K++D  +  G    L+ RE E L  ++ G T+D +A  LG+ 
Sbjct: 199 RGRLLEV-------CRRVKAHDGRYRHGTRPALSPRETEVLALVATGCTNDAVARRLGLL 251

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            NTV +Y+ S M+K     R  A+  A +  ++
Sbjct: 252 PNTVKSYLKSAMKKLDATNRVQAVNRARQAGLI 284


>gi|227547991|ref|ZP_03978040.1| regulatory family protein [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079936|gb|EEI17899.1| regulatory family protein [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 279

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 217 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 274


>gi|254476478|ref|ZP_05089864.1| autoinducer-binding transcriptional regulator, LuxR family
           [Ruegeria sp. R11]
 gi|214030721|gb|EEB71556.1| autoinducer-binding transcriptional regulator, LuxR family
           [Ruegeria sp. R11]
          Length = 252

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT+ +IAV++G++  TV  ++       + +T + A+  A  +N
Sbjct: 186 LTRRQREALQWVGDGKTTQDIAVLMGLTTATVEKHLRLAREALSVETTAHAVLKAALHN 244


>gi|254442705|ref|ZP_05056181.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198257013|gb|EDY81321.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 200

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +++G+++ EIA  L +   TV  ++ +I+ K     R+ AI  AV+  
Sbjct: 136 QLTKRELEVLAQVAKGRSNKEIANELNLVEGTVKVHLTNILSKLGVSDRTQAILAAVKRG 195

Query: 245 IV 246
           ++
Sbjct: 196 LI 197


>gi|111019574|ref|YP_702546.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819104|gb|ABG94388.1| transcriptional regulator, LuxR family protein [Rhodococcus jostii
           RHA1]
          Length = 412

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE+E L  ++ GK +  IA  LGIS +TV  ++A +++K    +R  A A A+   
Sbjct: 343 DLNPRELEVLGHLATGKRNKAIADSLGISESTVKFHVAGVLKKLGVASRGEAGAIALEAG 402

Query: 245 I 245
           I
Sbjct: 403 I 403


>gi|317482777|ref|ZP_07941789.1| luxR family Bacterial regulatory protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316915812|gb|EFV37222.1| luxR family Bacterial regulatory protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 158

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +L+ RE++ L   ++   + EIA  LGIS NTV +YI  + +K  TK RS
Sbjct: 97  QLSPRELQVLRLYTQNNNTSEIASQLGISSNTVFSYIHRVSKKIGTKNRS 146


>gi|239980315|ref|ZP_04702839.1| LuxR response regulator receiver [Streptomyces albus J1074]
 gi|291452180|ref|ZP_06591570.1| regulator [Streptomyces albus J1074]
 gi|291355129|gb|EFE82031.1| regulator [Streptomyces albus J1074]
          Length = 203

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  LT RE E L  +++G    EIA  L +S  TV NY+ +++ K   + R  AI  A
Sbjct: 137 GADSPLTERETEVLRLVAQGWEPSEIAKELHLSAGTVRNYLTTVVSKLNARNRVDAIRIA 196


>gi|239813574|ref|YP_002942484.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239800151|gb|ACS17218.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 227

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R+VE L  +S+GK +  I   LGIS  TV  ++A+I R    + R+ A+  A
Sbjct: 164 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAA 218


>gi|94969470|ref|YP_591518.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551520|gb|ABF41444.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 215

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE++ L  I EG ++  IA  L I   TV +++ +I+ K     R+ A+   +R
Sbjct: 145 DDHLTERELDVLRLIGEGNSNKLIADQLSIGEATVKSHVTNILSKLGASDRAHAVTIGLR 204

Query: 243 NNIV 246
             I+
Sbjct: 205 RGII 208


>gi|567886|gb|AAD15247.1| regulatory protein [Streptomyces peucetius]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 180 WGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           WG     LT RE+E L   + G   +EIAV L +S  TV NY+A+ +RK   + R  A+ 
Sbjct: 135 WGNTGCPLTEREMEILQLAAAGDDINEIAVKLSLSPGTVRNYLATTVRKMDARNRLDAVR 194

Query: 239 YA 240
            A
Sbjct: 195 IA 196


>gi|326444132|ref|ZP_08218866.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 201

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ++ +    +  L+ RE+  L   +EG++   IA  L ++  TV NY+A+ +RKT  + R 
Sbjct: 130 AFGLLQASEVPLSARELRVLALAAEGESVSSIANALHLASGTVRNYLAAAIRKTGARNRL 189

Query: 235 GAI 237
            AI
Sbjct: 190 DAI 192


>gi|320536217|ref|ZP_08036263.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
 gi|320146919|gb|EFW38489.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
          Length = 201

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L  RE + L  I++G  + EIA  L +S  T+ NY++SI+ K A + R+  + Y
Sbjct: 143 DLNEREADILELIADGLNNKEIAQRLYLSEGTIRNYVSSILEKLALRDRTQLVVY 197


>gi|294815787|ref|ZP_06774430.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294328386|gb|EFG10029.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 224

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ++ +    +  L+ RE+  L   +EG++   IA  L ++  TV NY+A+ +RKT  + R 
Sbjct: 153 AFGLLQASEVPLSARELRVLALAAEGESVSSIANALHLASGTVRNYLAAAIRKTGARNRL 212

Query: 235 GAI 237
            AI
Sbjct: 213 DAI 215


>gi|238025347|ref|YP_002909579.1| Two component transcriptional regulator [Burkholderia glumae BGR1]
 gi|237880012|gb|ACR32344.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 214

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+GRE++    I+ G T  EIA  LG+S  TV+ Y   I+ K      +  + YA+R
Sbjct: 145 DQRLSGREIDVFRRIAAGCTVCEIAHALGLSVKTVSTYKTRILEKMKLPHEAALVRYAIR 204

Query: 243 NNI 245
           + +
Sbjct: 205 HKL 207


>gi|182415000|ref|YP_001820066.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842214|gb|ACB76466.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 215

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +AA   N+  +       DF LT RE E L  ++E  ++ EIA  LGIS  TV+N+  ++
Sbjct: 129 VAALLRNVVANPSASNTADF-LTDREREILQLVAESHSTKEIAAKLGISIKTVDNHRTNL 187

Query: 225 MRK 227
           MRK
Sbjct: 188 MRK 190


>gi|86608341|ref|YP_477103.1| LuxR family transcriptional regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556883|gb|ABD01840.1| transcriptional regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 87

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 181 GKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           G D+     L+ RE++ +  I+ G T+ +IA  L IS+ TV+N+I++I+ KT T  R   
Sbjct: 2   GTDYHSADLLSERELQVIELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTANRVAL 61

Query: 237 IAYAVR 242
           + +A++
Sbjct: 62  VRWALQ 67


>gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074670|gb|ADJ64069.1| LuxR family two component response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E L  I+EG  + EIA  L +S  T+  + A +M +   +   G + YA+R  I
Sbjct: 152 LTPRQREILQLIAEGNNTKEIAYQLNVSAKTIETHRAQLMERLDIRDVPGLVRYAIRTGI 211

Query: 246 V 246
            
Sbjct: 212 A 212


>gi|238025036|ref|YP_002909268.1| FOG PAS/PAC domain-containing protein [Burkholderia glumae BGR1]
 gi|237879701|gb|ACR32033.1| FOG: PAS/PAC domain protein [Burkholderia glumae BGR1]
          Length = 529

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 1/113 (0%)

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVEC 193
            D++  +   M L       ++D  W    L    AN+ ++     G    +LT RE + 
Sbjct: 387 LDISERKRTEMELIQAIETAMQDASWFSRTLIEKLANVRRAKAPDAGAQLADLTARERDV 446

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    IV
Sbjct: 447 FDLLCHGLPDKEIANRLGLAPNTVRNHVATIYTKLDVHSRGEAIVWARERGIV 499


>gi|227501523|ref|ZP_03931572.1| possible response regulator [Corynebacterium accolens ATCC 49725]
 gi|227077548|gb|EEI15511.1| possible response regulator [Corynebacterium accolens ATCC 49725]
          Length = 219

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E LT I+ G T+ EIA  + I+  TV  +++++M K A + R   +  A +  I
Sbjct: 159 VTRREMEVLTLIARGATNSEIAGHMSIADTTVKTHVSALMSKLAARDRVALVLLAHKAGI 218


>gi|315649433|ref|ZP_07902521.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315275209|gb|EFU38579.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 214

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +++GK++ +IA  L I   TV  ++ +I+ K   + R+ A  YA +N 
Sbjct: 152 DLTDREMEVLRLVAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNG 211

Query: 245 I 245
           +
Sbjct: 212 L 212


>gi|306835684|ref|ZP_07468690.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304568402|gb|EFM43961.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 219

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E LT I+ G T+ EIA  + I+  TV  +++++M K A + R   +  A +  I
Sbjct: 159 VTRREMEVLTLIARGATNGEIAGHMSIADTTVKTHVSALMSKLAARDRVALVLLAHKAGI 218


>gi|302341508|ref|YP_003806037.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301638121|gb|ADK83443.1| two component transcriptional regulator, LuxR family [Desulfarculus
           baarsii DSM 2075]
          Length = 225

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + EG  + EIA  L +S+ TV N+ A+IMRK       G + YA+   +
Sbjct: 158 LTDRERQLLRLVVEGLPNREIADKLCLSQKTVENHRANIMRKLGRHDVIGLVKYAIATGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|297539450|ref|YP_003675219.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297258797|gb|ADI30642.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 275

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE E + W+  GKT+ EI +IL IS  TV  ++  I +K     R+ A
Sbjct: 215 LSDRESEIMLWVKMGKTNHEIGMILNISAFTVKKHLQRIFKKLDVLNRAQA 265


>gi|171058278|ref|YP_001790627.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775723|gb|ACB33862.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 209

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE++ LT I+ GK   +IA  L +S  TV+ Y A ++ K      S    YA+RN 
Sbjct: 148 KLSDRELQTLTMIASGKRLSDIAEELTLSPKTVSVYRARVLEKLGLANNSELTVYAIRNG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|107022537|ref|YP_620864.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689486|ref|YP_835109.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254245618|ref|ZP_04938939.1| PAS [Burkholderia cenocepacia PC184]
 gi|105892726|gb|ABF75891.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116647575|gb|ABK08216.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
 gi|124870394|gb|EAY62110.1| PAS [Burkholderia cenocepacia PC184]
          Length = 228

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 170 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 215


>gi|318059884|ref|ZP_07978607.1| response regulator [Streptomyces sp. SA3_actG]
 gi|318081229|ref|ZP_07988561.1| response regulator [Streptomyces sp. SA3_actF]
          Length = 199

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G L +    + +      G    L  RE + L  ++EG  + EIA  L  S  TV N +
Sbjct: 115 LGRLISQVGTLHRGNGAAGGTTLGLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVM 174

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             +  +   + R+ A+AYA+R   +
Sbjct: 175 HGLTTRLHLRNRAHAVAYALRQGYI 199


>gi|319785858|ref|YP_004145333.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464370|gb|ADV26102.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 221

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT ++   L  + EG+ + +IA  LG+S  T+  ++ +++RK     R+ A+  A R
Sbjct: 148 ELTPQQFRVLQMLGEGRLNKQIAYDLGVSEATIKAHVTAVLRKLGVGNRTQAVLMAGR 205


>gi|291455100|ref|ZP_06594490.1| response regulator [Streptomyces albus J1074]
 gi|291358049|gb|EFE84951.1| response regulator [Streptomyces albus J1074]
          Length = 222

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    LT REV+ +  I+EG  + EIA  L  S  TV N I  +  +   + R+ A+A
Sbjct: 155 QGGPSLGLTPREVDVVRLIAEGLDTGEIAGKLSYSERTVKNVIHGVTTRLHLRNRAHAVA 214

Query: 239 YAVRNNIV 246
           +A+R   +
Sbjct: 215 FALREGYI 222


>gi|262376171|ref|ZP_06069401.1| two component transcriptional regulator [Acinetobacter lwoffii
           SH145]
 gi|262308772|gb|EEY89905.1| two component transcriptional regulator [Acinetobacter lwoffii
           SH145]
          Length = 229

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L+ +++G ++ EIA  L +SR TV ++I  I RK +   R+ A++ A
Sbjct: 169 LTQREQEILSLVAQGLSNREIAEQLCVSRYTVESHIKHIYRKLSVSKRTKAVSTA 223


>gi|255264294|ref|ZP_05343636.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62]
 gi|255106629|gb|EET49303.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62]
          Length = 214

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  +++GK++ E+A+ L IS  TV  +  +I RK    T +G   YA+ N +
Sbjct: 147 LTNREQSILLQLAQGKSNKEVAIDLEISVRTVETHRKNIKRKLGISTTAGLTRYAMENGV 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|271965002|ref|YP_003339198.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508177|gb|ACZ86455.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE    ++ G+++ EI   L +S NTV +++ ++++K   + R  A+ +A  N +
Sbjct: 153 LTPREVEIFGLLARGRSNSEICAELVLSENTVKSHVRAVLQKLDLRDRVHAVIHAYENGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|124024406|ref|YP_001018713.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964692|gb|ABM79448.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 233

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 171 NMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            M    D    KD  L   T RE   L  ++EG  + EIA  L  S   V  Y++ +  K
Sbjct: 154 TMLAHGDGSSSKDVALHNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIK 213

Query: 228 TATKTRSGAIAYAVRNNIV 246
           T T +R+  + YA+ N +V
Sbjct: 214 TGTSSRTELVRYALENQLV 232


>gi|315128079|ref|YP_004070082.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315016592|gb|ADT69930.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 218

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 152 RIILRDRLW---EIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTS 203
           R++L D+LW   +I   A  +   F    +H   D      +LT RE   ++ +S G  +
Sbjct: 113 RLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTDGDIEPIKLTKREKAIISLMSNGSKN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L IS +TV  ++ S  RKT  + R   +++A +N
Sbjct: 173 KEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212


>gi|254718531|ref|ZP_05180342.1| two component transcriptional regulator, LuxR family protein
           [Brucella sp. 83/13]
 gi|265983502|ref|ZP_06096237.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306838339|ref|ZP_07471185.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653]
 gi|264662094|gb|EEZ32355.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306406630|gb|EFM62863.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G   YA+ N +
Sbjct: 149 LSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208


>gi|271964056|ref|YP_003338252.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507231|gb|ACZ85509.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L +++ G T+ EIA  L +   TV  ++A ++ K   + R+ A+ +A  + 
Sbjct: 152 DLTPRELEVLRFLARGLTNAEIAGQLFVGEATVKTHVARVLMKLHLRDRAQAVVFAYESG 211

Query: 245 IV 246
           +V
Sbjct: 212 VV 213


>gi|229822369|ref|YP_002883895.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568282|gb|ACQ82133.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 221

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  +S G ++ EIA  L +  +TV ++++ IM KTAT+ R   + +A  + +
Sbjct: 155 LSPRELEIVELLSRGSSNAEIAAALVLEPSTVKSHLSRIMTKTATRDRVQLVVWAFTHGV 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|223934123|ref|ZP_03626068.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|302024316|ref|ZP_07249527.1| response regulator protein [Streptococcus suis 05HAS68]
 gi|330833306|ref|YP_004402131.1| two component LuxR family transcriptional regulator [Streptococcus
           suis ST3]
 gi|223897209|gb|EEF63625.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|329307529|gb|AEB81945.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis ST3]
          Length = 200

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT  E + L  ++EG ++ EIA  L +S  TV NY+ SI+ K   + R+ A+  A
Sbjct: 139 LTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENRTAAVRIA 193


>gi|297197337|ref|ZP_06914734.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714865|gb|EDY58899.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 227

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E + W++EG ++++IA  L +S  TV  ++   M K   + R+  +  A ++ +
Sbjct: 159 LTGREREVMAWVAEGHSNEKIAEKLFVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQSGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|4217959|gb|AAD12186.1| putative DNA binding protein TutB1 [Thauera aromatica]
          Length = 227

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE+E L  +  G +S EIA +LGIS  TV  +   IM K   ++    I +A+R++
Sbjct: 148 LSQREMEILDKVVCGNSSKEIAKLLGISHKTVEAHRGRIMSKLGLRSTGDLIHFAMRSS 206


>gi|254254914|ref|ZP_04948231.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158]
 gi|124899559|gb|EAY71402.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158]
          Length = 510

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489

Query: 245 IV 246
           IV
Sbjct: 490 IV 491


>gi|294101416|ref|YP_003553274.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293616396|gb|ADE56550.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   S+G +S E+A  L IS  TV  ++ASI  K   + ++ A+  A++  +
Sbjct: 144 LSAREREVLVLASKGLSSKEVAAELFISERTVQTHLASIYDKLGARNKTEALLLALKYGV 203

Query: 246 V 246
           V
Sbjct: 204 V 204


>gi|239929935|ref|ZP_04686888.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438269|ref|ZP_06577659.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341164|gb|EFE68120.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+ G ++ EIAV L ++  TV  ++  I+ K   + R+ A  +A  + 
Sbjct: 154 DLTERETEVLALIARGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|237805558|ref|ZP_04592262.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331026665|gb|EGI06720.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 74

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R  
Sbjct: 10  QLTIKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 69

Query: 245 IV 246
           ++
Sbjct: 70  VI 71


>gi|261855565|ref|YP_003262848.1| LuxR family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261836034|gb|ACX95801.1| transcriptional regulator, LuxR family [Halothiobacillus
           neapolitanus c2]
          Length = 237

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + L W + GKTS E + I+ I+  TVN +IA+ M+K     ++ A   A 
Sbjct: 176 LTMREKDVLRWTAAGKTSGETSTIMNITERTVNFHIANSMQKLNCINKTSATVRAA 231


>gi|302531199|ref|ZP_07283541.1| predicted protein [Streptomyces sp. AA4]
 gi|302440094|gb|EFL11910.1| predicted protein [Streptomyces sp. AA4]
          Length = 295

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE + L  ++EG  +  IA +L +S  TV  ++ SI+RK + + R+ A+  A R+
Sbjct: 210 MPLSRREYQVLQLVAEGLENSGIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRS 269

Query: 244 NIV 246
            I+
Sbjct: 270 GIL 272


>gi|229824282|ref|ZP_04450351.1| hypothetical protein GCWU000282_01587 [Catonella morbi ATCC 51271]
 gi|229786255|gb|EEP22369.1| hypothetical protein GCWU000282_01587 [Catonella morbi ATCC 51271]
          Length = 199

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E + +  + EG ++ E+A  L +S  TV NY++++++K + K R+ AI     N 
Sbjct: 139 LTPQERQLMAGVREGLSNKELAQELHLSEGTVRNYMSTVLQKLSAKNRADAIRICQENG 197


>gi|161524958|ref|YP_001579970.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221197727|ref|ZP_03570773.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
 gi|221204715|ref|ZP_03577732.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221214910|ref|ZP_03587878.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD1]
 gi|160342387|gb|ABX15473.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|221165137|gb|EED97615.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD1]
 gi|221175572|gb|EEE08002.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221181659|gb|EEE14060.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
          Length = 228

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 170 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 215


>gi|27367717|ref|NP_763244.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6]
 gi|27359289|gb|AAO08234.1|AE016812_216 DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6]
          Length = 374

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT  E E  + +  G   DEIAV+   + NT+   I + + KTAT+ ++  +A  +R+
Sbjct: 311 FSLTLAEAEVTSLLCSGSLVDEIAVLRAATSNTIRQQIKACLAKTATRNQAELVAKVIRS 370


>gi|45259344|emb|CAF32980.1| uR protein [Pseudomonas putida]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LRD   E G+L   +A +  S  VH      LT RE E L W + GKT+ EI++IL  +
Sbjct: 154 LLRDYAME-GML---KARIECSTPVH------LTSREKEVLQWSAAGKTTWEISMILSCT 203

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + ++ +  +I RK    +R  A+  A++   +
Sbjct: 204 TSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSI 236


>gi|227508387|ref|ZP_03938436.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227192037|gb|EEI72104.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 219

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D H      L+ RE E    ++ G T+ EIA  L IS  TV  + ASIM K +  +R   
Sbjct: 148 DAHLQGYRSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPEL 207

Query: 237 IAYAVRNNIV 246
           + YAV ++++
Sbjct: 208 VRYAVHHHLI 217


>gi|119963933|ref|YP_949838.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119950792|gb|ABM09703.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 230

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E LT I+EG ++ EIA    +S  TV  ++  I+ K   + R   + YA    
Sbjct: 162 ELTPRETEILTTIAEGLSNAEIAHKFFLSEATVKTHVRRILSKLQLRDRVQVVVYAYETG 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|17987865|ref|NP_540499.1| transcriptional regulatory protein DEGU [Brucella melitensis bv. 1
           str. 16M]
 gi|23501247|ref|NP_697374.1| LuxR family DNA-binding response regulator [Brucella suis 1330]
 gi|148559651|ref|YP_001258379.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC
           25840]
 gi|161618323|ref|YP_001592210.1| two component LuxR family transcriptional regulator [Brucella canis
           ATCC 23365]
 gi|163842630|ref|YP_001627034.1| two component LuxR family transcriptional regulator [Brucella suis
           ATCC 23445]
 gi|225626863|ref|ZP_03784902.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo]
 gi|225851885|ref|YP_002732118.1| LuxR family two component transcriptional regulator [Brucella
           melitensis ATCC 23457]
 gi|254701158|ref|ZP_05162986.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 5 str. 513]
 gi|254703704|ref|ZP_05165532.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 3 str. 686]
 gi|254707920|ref|ZP_05169748.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M163/99/10]
 gi|254709500|ref|ZP_05171311.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis B2/94]
 gi|254713082|ref|ZP_05174893.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M644/93/1]
 gi|254716565|ref|ZP_05178376.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M13/05/1]
 gi|256030994|ref|ZP_05444608.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M292/94/1]
 gi|256044064|ref|ZP_05446975.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060484|ref|ZP_05450655.1| two component transcriptional regulator, LuxR family protein
           [Brucella neotomae 5K33]
 gi|256112861|ref|ZP_05453782.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|256159043|ref|ZP_05456876.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M490/95/1]
 gi|256254397|ref|ZP_05459933.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti B1/94]
 gi|256264603|ref|ZP_05467135.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256368799|ref|YP_003106305.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260168126|ref|ZP_05754937.1| DNA-binding response regulator, LuxR family protein [Brucella sp.
           F5/99]
 gi|260563426|ref|ZP_05833912.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260567044|ref|ZP_05837514.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|261218363|ref|ZP_05932644.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261221562|ref|ZP_05935843.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94]
 gi|261315409|ref|ZP_05954606.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317025|ref|ZP_05956222.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261320788|ref|ZP_05959985.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324478|ref|ZP_05963675.1| two component LuxR family transcriptional regulator [Brucella
           neotomae 5K33]
 gi|261751695|ref|ZP_05995404.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261754348|ref|ZP_05998057.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261757583|ref|ZP_06001292.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|265988062|ref|ZP_06100619.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265990479|ref|ZP_06103036.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994307|ref|ZP_06106864.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265997525|ref|ZP_06110082.1| two component LuxR family transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|294851727|ref|ZP_06792400.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|306842393|ref|ZP_07475048.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2]
 gi|306844978|ref|ZP_07477559.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1]
 gi|17983597|gb|AAL52763.1| two-component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23347130|gb|AAN29289.1| DNA-binding response regulator, LuxR family [Brucella suis 1330]
 gi|148370908|gb|ABQ60887.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC
           25840]
 gi|161335134|gb|ABX61439.1| two component transcriptional regulator, LuxR family [Brucella
           canis ATCC 23365]
 gi|163673353|gb|ABY37464.1| two component transcriptional regulator, LuxR family [Brucella suis
           ATCC 23445]
 gi|225618520|gb|EEH15563.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo]
 gi|225640250|gb|ACO00164.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis ATCC 23457]
 gi|255998957|gb|ACU47356.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260153442|gb|EEW88534.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156562|gb|EEW91642.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260920146|gb|EEX86799.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94]
 gi|260923452|gb|EEX90020.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293478|gb|EEX96974.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296248|gb|EEX99744.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300458|gb|EEY03955.1| two component LuxR family transcriptional regulator [Brucella
           neotomae 5K33]
 gi|261304435|gb|EEY07932.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737567|gb|EEY25563.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|261741448|gb|EEY29374.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261744101|gb|EEY32027.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262551993|gb|EEZ07983.1| two component LuxR family transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|262765420|gb|EEZ11209.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001263|gb|EEZ13838.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094966|gb|EEZ18674.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660259|gb|EEZ30520.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294820316|gb|EFG37315.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|306274610|gb|EFM56399.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1]
 gi|306287481|gb|EFM58951.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2]
 gi|326408384|gb|ADZ65449.1| LuxR family two component transcriptional regulator [Brucella
           melitensis M28]
 gi|326538098|gb|ADZ86313.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis M5-90]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G   YA+ N +
Sbjct: 149 LSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208


>gi|37681138|ref|NP_935747.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|320155205|ref|YP_004187584.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
 gi|326423837|ref|NP_760342.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6]
 gi|37199889|dbj|BAC95718.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|319930517|gb|ADV85381.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
 gi|319999206|gb|AAO09869.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6]
          Length = 215

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE++ L  +  GK++ +IA  L IS  TV +++    RK + K R  A A+A +
Sbjct: 152 NVDLTMREIQVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQ 211

Query: 243 NNI 245
           N I
Sbjct: 212 NLI 214


>gi|332968686|gb|EGK07738.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 215

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I+EG ++ EIA  L I+  TV  +++ I+ K   + R+ A  +A++  
Sbjct: 154 LTPREQEVLRLITEGMSNKEIAANLVIAEKTVKTHVSGILNKLDLQDRTQAAIHAMKQG 212


>gi|317488004|ref|ZP_07946586.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|316912906|gb|EFV34433.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 487

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            K+F L+GRE E L  I+ G T++ +A  L IS  TVN ++  I  K     RS  + Y
Sbjct: 421 AKEFSLSGREAEILVLIARGYTTNNMAEKLVISPYTVNTHVRHIYEKMQIHKRSELLNY 479


>gi|307324556|ref|ZP_07603763.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889800|gb|EFN20779.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 225

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E LT I++G ++ EIA  L ++  TV  +++ I+ K   + R+ A  +A    
Sbjct: 159 DLTERETEVLTLIAQGLSNAEIAARLVVAEQTVKTHVSRILFKLGLRDRTQAAVFAYETG 218

Query: 245 IV 246
           +V
Sbjct: 219 LV 220


>gi|302518950|ref|ZP_07271292.1| response regulator [Streptomyces sp. SPB78]
 gi|302427845|gb|EFK99660.1| response regulator [Streptomyces sp. SPB78]
          Length = 217

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G L +    + +      G    L  RE + L  ++EG  + EIA  L  S  TV N +
Sbjct: 133 LGRLISQVGTLHRGNGAAGGTTLGLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVM 192

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             +  +   + R+ A+AYA+R   +
Sbjct: 193 HGLTTRLHLRNRAHAVAYALRQGYI 217


>gi|302533532|ref|ZP_07285874.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442427|gb|EFL14243.1| two-component system response regulator [Streptomyces sp. C]
          Length = 223

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|255535277|ref|YP_003095648.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
 gi|255341473|gb|ACU07586.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
          Length = 226

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+E L  I++  ++++I   L IS  TV  +  +I  KT TK+  G I YA+   I
Sbjct: 162 LSGRELEVLKLIAKEFSNEQIGEQLFISERTVEAHRRNIFMKTKTKSIVGLIKYAITEGI 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|302875621|ref|YP_003844254.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307690153|ref|ZP_07632599.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302578478|gb|ADL52490.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 206

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ T RE + +  +SEG ++ EI+  L IS  T+ NYI +I+ KTA + R+      ++ 
Sbjct: 145 YDFTEREKDIIIAVSEGLSNKEISKKLFISEGTIRNYITAILDKTALEHRTAIAVNYLKG 204

Query: 244 NI 245
           N+
Sbjct: 205 NL 206


>gi|225022240|ref|ZP_03711432.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944963|gb|EEG26172.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 216

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE+E L  I EGKT+ EIA  L IS  TV  ++++++ K   + R
Sbjct: 157 LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSNLLAKVHARDR 204


>gi|148242532|ref|YP_001227689.1| two component system response regulator [Synechococcus sp. RCC307]
 gi|147850842|emb|CAK28336.1| Possible two component system response regulator [Synechococcus sp.
           RCC307]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  +SEG  + EIA  L IS+ TV  ++++++ K   + R+ A   A+R  
Sbjct: 171 QLSSREQEVLQALSEGYCNREIAQRLFISQETVKTHVSTVISKLGVRDRTQAAVMALRMG 230

Query: 245 IV 246
           ++
Sbjct: 231 LL 232


>gi|148555161|ref|YP_001262743.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148500351|gb|ABQ68605.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 899

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  +T RE++ L  +++G +S E+A  LG++ +T+  +  +I RK    TRS AI+ A R
Sbjct: 836 DIIVTPREIDVLRGLADGLSSKEMARSLGVAESTIKTHRINIYRKLNVATRSRAIS-AAR 894

Query: 243 N 243
           N
Sbjct: 895 N 895


>gi|332521658|ref|ZP_08398111.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
 gi|332042747|gb|EGI78947.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 23/168 (13%)

Query: 66  WDLFQEQKLDSIVSS-DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +D  +  K+D I+   D P  L    AL +  K Y       ++   +F T PE +    
Sbjct: 40  FDFLKHNKVDVILCEIDLP-KLNGITALRKIRKEY------PDVRVIIFSTQPEEVYALN 92

Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            +      Y S T D+  I+            I++  +    L  A    + +S     G
Sbjct: 93  AIKLGAAGYLSKTTDIITIKDA----------IIKAYMGNTYLSEAMTKRLMQSKKSSEG 142

Query: 182 KDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           + F  +L+ RE+E L  ++ GK + EIA  L I+  TV+ Y A +M+K
Sbjct: 143 QSFFKKLSNREIEVLKLLTSGKRNKEIAQELDINEKTVSTYRARLMKK 190


>gi|284042019|ref|YP_003392359.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946240|gb|ADB48984.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  I+ G+++ EIA +L +  +TV  ++  ++ K    +R  A+ YA    
Sbjct: 152 ELTPRERDVLLGIAAGRSNAEIAALLQLEESTVKGHVGRMLAKLGLHSRVQAVIYAYETG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|227502153|ref|ZP_03932202.1| regulatory family protein [Corynebacterium accolens ATCC 49725]
 gi|306836811|ref|ZP_07469769.1| LuxR family bacterial regulatory protein [Corynebacterium accolens
           ATCC 49726]
 gi|227077137|gb|EEI15100.1| regulatory family protein [Corynebacterium accolens ATCC 49725]
 gi|304567272|gb|EFM42879.1| LuxR family bacterial regulatory protein [Corynebacterium accolens
           ATCC 49726]
          Length = 279

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A 
Sbjct: 214 QSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAAR 273

Query: 242 R 242
           R
Sbjct: 274 R 274


>gi|198276688|ref|ZP_03209219.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135]
 gi|198270213|gb|EDY94483.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135]
          Length = 195

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L  +++G  + EIA  L IS  TV ++  +I  K   K+ SG   YAV 
Sbjct: 127 EHELSAREIEVLRLVTKGLINKEIADKLHISLTTVISHRKNITEKLGIKSVSGLAIYAVM 186

Query: 243 NNIV 246
           +  +
Sbjct: 187 HGYI 190


>gi|86740241|ref|YP_480641.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86567103|gb|ABD10912.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 357

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             LT RE+E L  +S G ++ E A  L +S  TV  Y+ SIMRK   + R+ A+  A
Sbjct: 294 LTLTPRELEVLAQVSLGLSNVETARRLTVSPETVKAYLRSIMRKLGVRNRTAAVHAA 350


>gi|29831078|ref|NP_825712.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608192|dbj|BAC72247.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 224

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G ++ EIA  L ++  TV  ++  I+ K + + R+ A  +A  + 
Sbjct: 158 ELTERETEVLALIAQGMSNAEIADRLVVAEQTVKTHVGRILVKLSLRDRTQAAVFAYESG 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|119358450|ref|YP_913094.1| two component LuxR family transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355799|gb|ABL66670.1| two component transcriptional regulator, LuxR family [Chlorobium
           phaeobacteroides DSM 266]
          Length = 203

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REVE L  +  G TS +IA  L IS  TV  +   IM K   +T +G   YA  + 
Sbjct: 142 QLTNREVEVLRCVVRGLTSRQIASELFISHRTVETHRQHIMEKLNIRTATGLAGYAREHG 201

Query: 245 IV 246
           ++
Sbjct: 202 LI 203


>gi|333025578|ref|ZP_08453642.1| putative two-component system response regulator TcsR2
           [Streptomyces sp. Tu6071]
 gi|332745430|gb|EGJ75871.1| putative two-component system response regulator TcsR2
           [Streptomyces sp. Tu6071]
          Length = 198

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  L+ RE E L + ++G    EIA   G+S  TV NY++S + K   + R 
Sbjct: 127 AADAIAAGDSPLSAREAEVLEYAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRH 186

Query: 235 GAI 237
            A+
Sbjct: 187 AAV 189


>gi|302557670|ref|ZP_07310012.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
 gi|302475288|gb|EFL38381.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
          Length = 222

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  EL+GR +E +  I+ G+T+ EIA  L IS +TV ++++ I  K   + R+    +A 
Sbjct: 153 RSSELSGRALEVVQAIARGRTNQEIAAELFISLSTVKSHLSGIQTKLGVRNRTEIAVWAW 212

Query: 242 RNNIV 246
            N +V
Sbjct: 213 ENRVV 217


>gi|229821847|ref|YP_002883373.1| LuxR family transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229567760|gb|ACQ81611.1| transcriptional regulator, LuxR family [Beutenbergia cavernae DSM
           12333]
          Length = 872

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ E L  ++ G TS EIA  L +SR TV+N++A ++      +R  A+A
Sbjct: 800 LTPRQHEILGLVARGLTSPEIADCLYLSRRTVDNHVADVLAALGVPSRRDAVA 852


>gi|219667264|ref|YP_002457699.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219537524|gb|ACL19263.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 212

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G T++EIA IL IS  TV+ + +++M+K    ++     YA++  +
Sbjct: 150 LTEREREILILLAKGHTNNEIAPILNISAKTVDYHRSNLMKKLNLHSKVELTKYALKRGL 209

Query: 246 V 246
           +
Sbjct: 210 I 210


>gi|260584047|ref|ZP_05851795.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC
           700633]
 gi|260158673|gb|EEW93741.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC
           700633]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I++GK++ EIA    I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 150 TSREKEVLLLIAQGKSNQEIADECFITLKTVKTHVSNILSKLQVEDRTQATIYAFKHHLV 209


>gi|254688650|ref|ZP_05151904.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 6
           str. 870]
 gi|256256897|ref|ZP_05462433.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 9
           str. C68]
 gi|260754126|ref|ZP_05866474.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260883151|ref|ZP_05894765.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297247749|ref|ZP_06931467.1| two-component system, NarL family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|260674234|gb|EEX61055.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872679|gb|EEX79748.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297174918|gb|EFH34265.1| two-component system, NarL family, response regulator [Brucella
           abortus bv. 5 str. B3196]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G   YA+ N +
Sbjct: 149 LSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208


>gi|305680225|ref|ZP_07403033.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659756|gb|EFM49255.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 216

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE+E L  I EGKT+ EIA  L IS  TV  ++++++ K   + R
Sbjct: 157 LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSNLLAKVHARDR 204


>gi|258653619|ref|YP_003202775.1| LuxR family ATP-dependent transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556844|gb|ACV79786.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Nakamurella multipartita DSM 44233]
          Length = 901

 Score = 41.2 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +  G+T+ +IA  L ++ NTV  Y+ +I  K     R+ A A A R  +
Sbjct: 840 LTARELDILRMVGSGRTNQQIATSLTVTVNTVKWYLKNIYTKLGATNRTEATAIARREGL 899


>gi|254464296|ref|ZP_05077707.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium
           Y4I]
 gi|206685204|gb|EDZ45686.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium
           Y4I]
          Length = 251

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT+ +IA+++G++  T+  ++       A +T + A+  A  +N
Sbjct: 186 LTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLAVETTAQAVLKAALHN 244


>gi|329848990|ref|ZP_08264018.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
 gi|328844053|gb|EGF93622.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
          Length = 216

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E LT ++ G T  E+A  L +   TV  Y+  I +K    +R+ A   AV+  +
Sbjct: 156 LTGRETETLTLLARGLTIAEVAKALNLKPQTVAGYVKVIYQKLNVSSRAEATLKAVKRGL 215


>gi|159044368|ref|YP_001533162.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912128|gb|ABV93561.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 243

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L WI+ GK++  IA ILG+S +TV+  +  I  K     R+ A    +   +
Sbjct: 176 LTPREREVLGWIARGKSNSVIAEILGVSPHTVDTLVRRIYGKLEVADRTTAAIRGIGAGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|89098238|ref|ZP_01171123.1| two-component response regulator involved in degradative enzyme
           [Bacillus sp. NRRL B-14911]
 gi|89087095|gb|EAR66211.1| two-component response regulator involved in degradative enzyme
           [Bacillus sp. NRRL B-14911]
          Length = 217

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 168 YQANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           + A + K YD+    D         LT RE E      +  T+ EIA  L I+++TV+ +
Sbjct: 129 FDAMIVKEYDIMPSFDKREMQQIPGLTRREWEIFQLTVKDMTNQEIAESLSINQSTVSVH 188

Query: 221 IASIMRKTATKTRSGAIAYAVR 242
           I  I++KT +KT  GA+A  +R
Sbjct: 189 IKGIVKKTGSKTIRGAVAKGLR 210


>gi|302561410|ref|ZP_07313752.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302479028|gb|EFL42121.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 188

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+ + EIA  L +S  TV  ++++I+ K     R+ A  +A
Sbjct: 122 GRAGALTEREREVLGLIADGRANREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWA 181

Query: 241 VRNNI 245
           VR+ +
Sbjct: 182 VRHGV 186


>gi|213966477|ref|ZP_03394650.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum
           SK46]
 gi|213950876|gb|EEB62285.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum
           SK46]
          Length = 278

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 216 KLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 273


>gi|163786674|ref|ZP_02181122.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Flavobacteriales bacterium ALC-1]
 gi|159878534|gb|EDP72590.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Flavobacteriales bacterium ALC-1]
          Length = 136

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 37/59 (62%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           KD +++ RE E L  I+EG ++ EIA  L +S +T+  ++++++ K   K R+ A+  A
Sbjct: 72  KDLDISNREYEVLQKIAEGLSNKEIAESLFLSESTIKTHVSNLLVKLDAKRRTQALKKA 130


>gi|15613763|ref|NP_242066.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173816|dbj|BAB04919.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 209

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  I EGK++  IA  L I   TV  ++++I+ K   + R+    YA R+ 
Sbjct: 147 ELTPRELEVLRLIGEGKSNQGIADELYIGIKTVKTHVSNILHKLQLEDRTQIAVYAHRHR 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|152974058|ref|YP_001373575.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152022810|gb|ABS20580.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 156 QLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLIGKLELRDRTQAAIYAVRYG 215

Query: 245 I 245
           I
Sbjct: 216 I 216


>gi|86143242|ref|ZP_01061644.1| hypothetical protein MED217_08670 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830147|gb|EAQ48607.1| hypothetical protein MED217_08670 [Leeuwenhoekiella blandensis
           MED217]
          Length = 231

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E +      KT  EIA  + +S  T++NY  ++ +K   K+R G + YA++N IV
Sbjct: 170 SSRELEFMELACSDKTYKEIANEMCLSPKTIDNYRDTLFKKLEVKSRIGLVLYALKNKIV 229


>gi|325528716|gb|EGD05787.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|317497971|ref|ZP_07956276.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894724|gb|EFV16901.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 212

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 3/64 (4%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT--ATKTRSGAIAYAVR 242
           ELT +E+E L ++ EG    EIA  + IS+ TV  +I++I+ KT  A KTR  AIA   +
Sbjct: 142 ELTAKEIEVLRFVCEGLEYSEIAERMHISQRTVKFHISNILSKTGYANKTRL-AIAVTNK 200

Query: 243 NNIV 246
           N I+
Sbjct: 201 NFII 204


>gi|308187897|ref|YP_003932028.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1]
 gi|308058407|gb|ADO10579.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1]
          Length = 215

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 5/95 (5%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G+I+L + L  I +    ++   ++ D+      +LT RE + L  IS+G T+  IA  L
Sbjct: 125 GQIVLSEALTPILVARLRESQPAQTRDIS-----QLTRRERDILQLISDGMTNKAIARKL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS +TV  ++  +++K   K+R  A  +A++N +
Sbjct: 180 DISESTVKVHVKYLLKKINLKSRLEAAVWALQNGL 214


>gi|294102849|ref|YP_003554707.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617829|gb|ADE57983.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 223

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H   +  L+ RE E L  I+EGK + +IA  L IS  TV  +  +IMRK    + +    
Sbjct: 153 HTDSESALSHREKEVLQLIAEGKANRDIAKTLHISVKTVETHKYNIMRKINLHSVAELTK 212

Query: 239 YAVRNNI 245
           YA+++ +
Sbjct: 213 YAIKSGL 219


>gi|197121316|ref|YP_002133267.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171165|gb|ACG72138.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
          Length = 208

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG  +  IA  LGIS +T   ++ +I+ K    +R+ AI  A R  +
Sbjct: 146 LTPREREVLALVAEGLGNKAIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLGL 205

Query: 246 V 246
           V
Sbjct: 206 V 206


>gi|161521689|ref|YP_001585116.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352145|ref|YP_001947772.1| transcriptional regulator [Burkholderia multivorans ATCC 17616]
 gi|221210733|ref|ZP_03583713.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
 gi|160345739|gb|ABX18824.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336167|dbj|BAG45236.1| transcriptional regulator [Burkholderia multivorans ATCC 17616]
 gi|221169689|gb|EEE02156.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
          Length = 510

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489

Query: 245 IV 246
           IV
Sbjct: 490 IV 491


>gi|88703812|ref|ZP_01101527.1| transcriptional regulator malT [Congregibacter litoralis KT71]
 gi|88701639|gb|EAQ98743.1| transcriptional regulator malT [Congregibacter litoralis KT71]
          Length = 888

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +  G+++ EIA    +S NTV  ++ +I  K    +R  A+A+A+R+ +
Sbjct: 828 LSIREIEILRCLMMGESNREIAAGKALSINTVKFHLKNIFSKLGASSRDEAVAFAIRDQL 887

Query: 246 V 246
           +
Sbjct: 888 L 888


>gi|90423713|ref|YP_532083.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105727|gb|ABD87764.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB18]
          Length = 240

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE +CL  +  G+T  +IA  L +S + V+ Y+ +  RK    T   AIA AVR
Sbjct: 177 LSRREQQCLQGLVHGRTPGQIAGDLELSASAVHGYLRTARRKLNCATHEQAIAKAVR 233


>gi|158314279|ref|YP_001506787.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158109684|gb|ABW11881.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 211

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L  RE + L  I+EG T+ +IA  + +S  TV NY+++I+ K    +R+ A  +A R
Sbjct: 152 LGSRERQILRLIAEGMTNRQIAGCVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAAR 208


>gi|285808415|gb|ADC35942.1| two component transcriptional regulator LuxR family [uncultured
           bacterium 70]
          Length = 210

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I  G ++ EIA  LG+S NTV  + A+IM        +  + YA+ N +
Sbjct: 147 LTPRELEVLQLICSGMSNKEIAEELGLSVNTVAVHRANIMNALGLHKTAELVVYAISNGL 206

Query: 246 V 246
           V
Sbjct: 207 V 207


>gi|303234262|ref|ZP_07320907.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302494626|gb|EFL54387.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 208

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            K  ELT RE+E L  ++ G  +D+IA  LGI  NTV  +I  ++ KT   +R+
Sbjct: 139 AKSTELTPREIEVLRLLTTGAGNDQIAEELGILLNTVKTHIQHMLDKTEFTSRT 192


>gi|237798895|ref|ZP_04587356.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021749|gb|EGI01806.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 78

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    +T RE E L  + +G T+ EIA  L IS  TV ++++S++RK   +TR   +A  
Sbjct: 4   GNIMSVTIREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVRTRVELMARC 63

Query: 241 V 241
           V
Sbjct: 64  V 64


>gi|148912803|ref|YP_001293382.1| Conserved hypothetical protein; putative transcriptional regulator,
           LuxR family [Pseudomonas phage F10]
          Length = 127

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A   A+ F  +    GK   L  RE++C+  I+ G+TS E+A  LG+   TV   + +  
Sbjct: 4   ATITAHGFTGF---LGKGLSL--RELQCVLGIAAGRTSKELARDLGMQPGTVGKRVLAAT 58

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R+  +A A+R  ++
Sbjct: 59  TKLGVTRRAALVAEAMRRGLI 79


>gi|126731865|ref|ZP_01747669.1| putative two-component response regulator [Sagittula stellata E-37]
 gi|126707692|gb|EBA06754.1| putative two-component response regulator [Sagittula stellata E-37]
          Length = 217

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  IS G  + E+A  LG++  TV +YI SI  K    +R+ A  +A R
Sbjct: 148 LTDRETEVLALISRGLRNSEVARELGLAETTVASYIKSIYGKLGISSRAEASWHATR 204


>gi|120436410|ref|YP_862096.1| LuxR family transcriptional regulator protein [Gramella forsetii
           KT0803]
 gi|117578560|emb|CAL67029.1| LuxR family transcriptional regulator protein [Gramella forsetii
           KT0803]
          Length = 347

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DF  T RE E +  + +G  + EI+  L IS  T+  + ++I+++T ++T   ++ YA+ 
Sbjct: 279 DFSFTKREKEIIGLLCKGYKTKEISDTLFISPKTIEKHRSNIIKRTNSETILESVIYAIN 338

Query: 243 NNIV 246
           +N+V
Sbjct: 339 HNLV 342


>gi|54297872|ref|YP_124241.1| hypothetical protein lpp1927 [Legionella pneumophila str. Paris]
 gi|53751657|emb|CAH13079.1| hypothetical protein lpp1927 [Legionella pneumophila str. Paris]
          Length = 223

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE EC+  +  GK++  I  +L +S+ TV +YI +I  K   + ++  +  AV N
Sbjct: 145 YGLTEREHECVFLLIRGKSAKGIGALLSLSKRTVESYIENIKNKMDCRNKAEILVKAVSN 204


>gi|33591312|ref|NP_878956.1| transcriptional regulator [Bordetella pertussis Tohama I]
 gi|33598581|ref|NP_886224.1| transcriptional regulator [Bordetella parapertussis 12822]
 gi|33603531|ref|NP_891091.1| transcriptional regulator [Bordetella bronchiseptica RB50]
 gi|33570954|emb|CAE40423.1| transcriptional regulator [Bordetella pertussis Tohama I]
 gi|33574710|emb|CAE39367.1| transcriptional regulator [Bordetella parapertussis]
 gi|33577655|emb|CAE34920.1| transcriptional regulator [Bordetella bronchiseptica RB50]
 gi|332380714|gb|AEE65561.1| transcriptional regulator [Bordetella pertussis CS]
          Length = 78

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE++CL W + GKTS E A ILGI+  TV+ ++A+   K
Sbjct: 7   LTPRELDCLHWSALGKTSWETARILGIAARTVDFHLANACAK 48


>gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 40/69 (57%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +D ELT  E + +  +++G  + EIA  L +S+ TV +++++++ KT    R+   
Sbjct: 145 VQVARDVELTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELA 204

Query: 238 AYAVRNNIV 246
            +A++ +I 
Sbjct: 205 RWAIQKSIA 213


>gi|121603022|ref|YP_980351.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120591991|gb|ABM35430.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  LT R+ E L  +++G ++  IA  L +S +T+ N++ +I+R     TR+ A+  +
Sbjct: 149 GGDESLTPRQYEVLKLLAQGLSNKAIAFKLHLSEHTIRNHVVAILRHFNALTRTEAVMAS 208

Query: 241 VR 242
            R
Sbjct: 209 QR 210


>gi|291515940|emb|CBK65150.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Alistipes shahii WAL 8301]
          Length = 192

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E LT I+ G  + ++A  LGI   TV ++  +IM K   +T +G + YA+
Sbjct: 127 LTEREAEVLTLIAGGLINKQVADRLGIGLTTVISHRRNIMEKLGIRTAAGLVVYAL 182


>gi|240172655|ref|ZP_04751314.1| transcriptional regulator, LuxR family protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 968

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++  I   L IS NT  N++ SI+ KT    R+ A  YA  + +
Sbjct: 907 LTDREIEVLRLLAAGLSNRAIGERLYISTNTAANHVRSILIKTGAANRTQAAMYAADHQL 966

Query: 246 V 246
           +
Sbjct: 967 L 967


>gi|291286657|ref|YP_003503473.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883817|gb|ADD67517.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 212

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT REVE L  + +G T +E++  L ISRNTV+ +I  I  K     +  A+  A
Sbjct: 152 LTKREVEVLKLLDQGFTYNEVSAELDISRNTVHTHIKKIYEKLQASGKEDALRKA 206


>gi|225869438|ref|YP_002745386.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702714|emb|CAX00841.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 199

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+E L  IS+  ++++I+  L ISR TV+ ++++I  K    +R GA+  A+R  +
Sbjct: 139 LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIRLKL 198

Query: 246 V 246
           +
Sbjct: 199 I 199


>gi|237785039|ref|YP_002905744.1| LuxR family transcriptional regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757951|gb|ACR17201.1| transcriptional regulator, LuxR family [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 279

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 217 KLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 274


>gi|221197390|ref|ZP_03570437.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
 gi|221204064|ref|ZP_03577082.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221176230|gb|EEE08659.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221183944|gb|EEE16344.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
          Length = 510

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489

Query: 245 IV 246
           IV
Sbjct: 490 IV 491


>gi|323154780|gb|EFZ40977.1| bacterial regulatory s, luxR family protein [Escherichia coli
           EPECa14]
          Length = 123

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  D +LT  E E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I  
Sbjct: 55  YSSDNQLTNSESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKT 114

Query: 240 AVR 242
           A+R
Sbjct: 115 ALR 117


>gi|302866747|ref|YP_003835384.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302569606|gb|ADL45808.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 225

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE E L  ++ G ++ EIA +L +   TV  +++ ++ K   + R  A+ 
Sbjct: 154 HDAATADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVV 213

Query: 239 YAVRNNIV 246
           +A  + +V
Sbjct: 214 FAYEHGVV 221


>gi|297161015|gb|ADI10727.1| transcriptional regulator, LuxR family protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 257

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 39/79 (49%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           + A QA +         +   LT RE + L  I+ G T+D+ A  LGIS  T+  ++  +
Sbjct: 172 VTAIQAEISAGPPAAPPRRCTLTERENQVLALIATGHTNDQAARKLGISPRTIRKHLEGV 231

Query: 225 MRKTATKTRSGAIAYAVRN 243
             K    +R+ A+A+ +R 
Sbjct: 232 FSKANVPSRAAAVAWWLRQ 250


>gi|227535294|ref|ZP_03965343.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187028|gb|EEI67095.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A+  A +N
Sbjct: 141 LTDRELAVLAAVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKN 198


>gi|227511386|ref|ZP_03941435.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227523593|ref|ZP_03953642.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227085337|gb|EEI20649.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227089253|gb|EEI24565.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D H      L+ RE E    ++ G T+ EIA  L IS  TV  + ASIM K +  +R   
Sbjct: 148 DAHLQGYRSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPEL 207

Query: 237 IAYAVRNNIV 246
           + YAV ++++
Sbjct: 208 VRYAVHHHLI 217


>gi|254385060|ref|ZP_05000394.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343939|gb|EDX24905.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 224

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL  Y  ++    D        LT REVE L  ++ G ++ EIA  L +S  TV  ++  
Sbjct: 136 LLDKYAGHLPSGEDSVPNTLGTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGH 195

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K   + R  A  YA  + +V
Sbjct: 196 VLTKLGLRDRVQAAVYAYESGLV 218


>gi|134295537|ref|YP_001119272.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134138694|gb|ABO54437.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 245

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LLA  +A   K   VH       T RE   L  ++EG  + EIA  L  S   V  Y++ 
Sbjct: 167 LLAQAEALPSKEPVVHS-----FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSR 221

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +  KT T +R+  + YA+ + +V
Sbjct: 222 LFNKTGTSSRTELVRYALEHRLV 244


>gi|258652230|ref|YP_003201386.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258555455|gb|ACV78397.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 212

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE E L  +  G+++ + A  LGIS +TV N++  I+ K    ++  A+A A R
Sbjct: 139 DLTPRESEVLQLVGAGRSNQQTARELGISVHTVRNHVQHILDKLGAHSQLEAVAIASR 196


>gi|254381952|ref|ZP_04997315.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340860|gb|EDX21826.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 228

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           F L+ RE E +  I+ G ++ +IA    IS  TV N+I  I  K  + TRS AIA
Sbjct: 160 FGLSSREEEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFAKLQSTTRSEAIA 214


>gi|13990973|dbj|BAB47256.1| LuxR family quorum-sensing transcription factor [Agrobacterium
           tumefaciens]
          Length = 269

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE  CL W ++GKT+ E A++ GI+  TV +Y+     K    T    +A A  + +
Sbjct: 209 LSPREAMCLKWAAKGKTAPETAILTGINPRTVQHYLDKAREKLEAATVPHLVAIAKDHGL 268

Query: 246 V 246
           +
Sbjct: 269 L 269


>gi|23098524|ref|NP_691990.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776750|dbj|BAC13025.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 215

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE      I  G T+ EIA  L ++  TV NYI SI++KT  + R+    +AVR+ 
Sbjct: 152 QLSERERVITALIGSGLTNKEIADELFLTIGTVKNYITSILQKTEQRDRTQLAIFAVRHG 211

Query: 245 I 245
           I
Sbjct: 212 I 212


>gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 245

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  ++EG  + EIA  L  S   V  Y+  ++ KT T +R+  + YA+   
Sbjct: 182 ELTPREQQVLEKVAEGLMNKEIAKQLQTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYG 241

Query: 245 IV 246
           ++
Sbjct: 242 LI 243


>gi|89902051|ref|YP_524522.1| LuxR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89346788|gb|ABD70991.1| transcriptional regulator, LuxR family [Rhodoferax ferrireducens
           T118]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           GR + RD+ +   +       MF+           LT RE E +  ++ G+ + +IA  L
Sbjct: 115 GRSLQRDQPFACAVW------MFEDISSRRPVAMTLTAREREIVRQLAAGQGTKQIARTL 168

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIA 238
           G+S  T++ + A IMRK   ++ S  IA
Sbjct: 169 GVSPRTIDGHRARIMRKVGAQSSSEMIA 196


>gi|50955380|ref|YP_062668.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951862|gb|AAT89563.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 207

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G+T+ ++   L +S  TV  ++  I  K    TR+ A++ A++  +
Sbjct: 145 LTPREIEVLALLATGRTNRQVGERLFVSETTVKTHVNHIFTKLGVDTRAAAVSRAMKEGL 204

Query: 246 V 246
           +
Sbjct: 205 I 205


>gi|19553757|ref|NP_601759.1| regulatory-like protein [Corynebacterium glutamicum ATCC 13032]
 gi|62391399|ref|YP_226801.1| LuxR family regulatory protein [Corynebacterium glutamicum ATCC
           13032]
 gi|145296555|ref|YP_001139376.1| hypothetical protein cgR_2464 [Corynebacterium glutamicum R]
 gi|21325332|dbj|BAB99953.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
 gi|41326740|emb|CAF21222.1| Bacterial regulatory protein, LuxR family [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846475|dbj|BAF55474.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 281

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 219 KLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 276


>gi|254252565|ref|ZP_04945883.1| PAS [Burkholderia dolosa AUO158]
 gi|124895174|gb|EAY69054.1| PAS [Burkholderia dolosa AUO158]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|115526773|ref|YP_783684.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115520720|gb|ABJ08704.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 223

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +I L AA    M K  D    +   LT ++V  L  +SEG  + +IA  LG+S  T+  +
Sbjct: 134 DIDLNAASDPEMTKLRD----RLVTLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAH 189

Query: 221 IASIMRKTATKTRSGAIAYAVR 242
           +++I++K   ++R+ A+  A +
Sbjct: 190 VSAILQKLGVESRTQAVIAAAK 211


>gi|322378102|ref|ZP_08052588.1| transcriptional regulatory protein DegU [Streptococcus sp. M334]
 gi|321280939|gb|EFX57953.1| transcriptional regulatory protein DegU [Streptococcus sp. M334]
          Length = 198

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L  +  G T D+I   + +S+ TV+N++A+I  K    +R  AI  A
Sbjct: 135 LTSREIEMLELVRNGLTIDDICEKVYVSKRTVSNHLANIFSKLGVSSRQEAIHVA 189


>gi|298252028|ref|ZP_06975831.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546620|gb|EFH80488.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1079

 Score = 40.8 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 35/55 (63%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE+E L  ++EG ++ +IA +L I  +TV  ++ S++ K   ++R+ A+  A
Sbjct: 1019 LTRRELEVLRLLAEGASNQQIAAVLVIQLSTVKKHVGSLLAKLGAESRTQALVKA 1073


>gi|189350294|ref|YP_001945922.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189334316|dbj|BAG43386.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|170701142|ref|ZP_02892116.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|171322886|ref|ZP_02911589.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|170133964|gb|EDT02318.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|171091745|gb|EDT37277.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
 gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
          Length = 245

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LLA  +A   K   VH       T RE   L  ++EG  + EIA  L  S   V  Y++ 
Sbjct: 167 LLAQAEALPSKDPVVHS-----FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSR 221

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +  KT T +R+  + YA+ + +V
Sbjct: 222 LFNKTGTSSRTELVRYALEHRLV 244


>gi|148658346|ref|YP_001278551.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570456|gb|ABQ92601.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 216

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F+L+ RE E L  +++G ++ EIA  L I+  TV N++++I+ K   + R+ A   A R 
Sbjct: 153 FDLSEREREVLVLLAQGLSNREIAGRLSITEGTVKNHVSNILAKLQAENRTQAANIARRE 212

Query: 244 NI 245
            +
Sbjct: 213 GL 214


>gi|8708904|gb|AAF78795.1| putative two-component system transcriptional response regulator
           TcsR [Bradyrhizobium japonicum]
          Length = 223

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A R
Sbjct: 154 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAR 210


>gi|319791283|ref|YP_004152923.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315593746|gb|ADU34812.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 230

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R+VE L  +S+GK +  I   LGIS  TV  ++A+I R    + R+ A+  A
Sbjct: 167 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAA 221


>gi|297156704|gb|ADI06416.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 195

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT ++EG ++ EIA  L I   TV  +IA    K   + R+ A+ YA R+ I
Sbjct: 123 LTPREAEVLTLVAEGLSNAEIARRLHIGPATVKTHIA----KAGVRDRAQAVRYAYRSGI 178

Query: 246 V 246
            
Sbjct: 179 A 179


>gi|295093014|emb|CBK82105.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Coprococcus sp. ART55/1]
          Length = 217

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G ++EL+ +E+  +  +++G  + EIA  L +S  TV NYI+SI+ K   + R+
Sbjct: 152 GMEYELSSKEMNIIRLVADGLNNKEIASSLYLSEGTVRNYISSILDKLQLRDRT 205


>gi|206559838|ref|YP_002230602.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198035879|emb|CAR51770.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|27376305|ref|NP_767834.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27349445|dbj|BAC46459.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 223

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A R
Sbjct: 154 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAR 210


>gi|119714200|ref|YP_919342.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526109|gb|ABL79479.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ REVE L  I+ G+++ EIA  L +S  T  N+++SI+ K    TR+ A+A A
Sbjct: 153 LSAREVEVLDLIAAGRSNAEIAASLVVSPKTAKNHVSSILTKLGC-TRTEAVARA 206


>gi|256377059|ref|YP_003100719.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921362|gb|ACU36873.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 207

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+EG  + EIA  L  S  TV N    I  +   + R  A+AYA+R  +
Sbjct: 147 LTSREADVLRLIAEGLDTAEIATRLSYSERTVKNVFYGITTRLHLRNRPHAVAYALRKGM 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|315500523|ref|YP_004089325.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
 gi|315418535|gb|ADU15174.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
          Length = 218

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LTGRE E +  I+EG T+ EI   LGIS  TV  ++  ++ K     R+ A   A R+
Sbjct: 154 LTGREREIVHLIAEGMTNKEIGRSLGISPATVKAHVERLIAKLGVTDRTQAAVLASRH 211


>gi|238893250|ref|YP_002917984.1| trans-acting regulatory protein of aco operon [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545566|dbj|BAH61917.1| trans-acting regulatory protein of aco operon [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 921

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE++ L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+ A++ A+   
Sbjct: 859 ELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 918

Query: 245 IV 246
           ++
Sbjct: 919 LL 920


>gi|220907344|ref|YP_002482655.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863955|gb|ACL44294.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 209

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  + EGK++ EIA+ L IS  T+  ++  I+RK     R+ A+  A++  
Sbjct: 146 QLTERERQVLMLMCEGKSNQEIALTLQISEGTIKFHVNGILRKLDVCDRTQAVLVALKRG 205

Query: 245 I 245
           +
Sbjct: 206 M 206


>gi|25029001|ref|NP_739055.1| hypothetical protein CE2445 [Corynebacterium efficiens YS-314]
 gi|259506010|ref|ZP_05748912.1| LuxR family bacterial regulatory protein [Corynebacterium efficiens
           YS-314]
 gi|23494288|dbj|BAC19255.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166491|gb|EEW51045.1| LuxR family bacterial regulatory protein [Corynebacterium efficiens
           YS-314]
          Length = 281

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+  A R
Sbjct: 219 KLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARR 276


>gi|170732792|ref|YP_001764739.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169816034|gb|ACA90617.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|311897256|dbj|BAJ29664.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT +E   L  I EG T+ +I   L ++  TV NY++S++ K   + R+ A AY  R
Sbjct: 155 QLTKQERRILDLIGEGMTNRQIGNELHLAEKTVKNYVSSLLAKMGMERRTQAAAYVAR 212


>gi|306830765|ref|ZP_07463929.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304427112|gb|EFM30220.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 198

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +D  L+ +E   L  IS GKT+ EIA  L +S  TV NYI+SI+ K +   R  A   A
Sbjct: 134 QDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEATRIA 192


>gi|303239313|ref|ZP_07325841.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593099|gb|EFL62819.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 210

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E    ++E  ++ EIA  L I+  TV N+I +I+ K     R+    Y + NN
Sbjct: 150 ELTSREHEIAKLVAEALSNKEIAAKLFITEGTVKNHITNILSKLDLNHRTKIALYVIENN 209

Query: 245 I 245
           +
Sbjct: 210 L 210


>gi|269216365|ref|ZP_06160219.1| two component transcriptional regulator, LuxR family [Slackia
           exigua ATCC 700122]
 gi|269130624|gb|EEZ61702.1| two component transcriptional regulator, LuxR family [Slackia
           exigua ATCC 700122]
          Length = 472

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  +  LT RE E L  + +G+T   IA  LG+S NTV  YI S+ +K+  + +
Sbjct: 402 FAHEHSLTTRESEVLMLLRQGRTRTYIAAELGLSPNTVKGYIHSLYQKSEARDK 455


>gi|253577576|ref|ZP_04854888.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843045|gb|EES71081.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 227

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  +T RE E L  I+EGK++ +IA  L IS  TV  ++++++ K   + R+    YA
Sbjct: 159 GDDSGMTEREKEVLLLIAEGKSNKDIAEELHISIKTVKTHVSNLLMKCELEDRTQLAIYA 218

Query: 241 VRNN 244
            R  
Sbjct: 219 HRQG 222


>gi|256391094|ref|YP_003112658.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357320|gb|ACU70817.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 200

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 24/109 (22%)

Query: 156 RDRLWEIGLLAAYQANMFKSYD----------VHWGK--------------DFELTGREV 191
           R  +  + L A  +  + KS D          VH GK              D  LT RE+
Sbjct: 86  RAGVLRMALAAGVRGFLLKSVDPTELERVIIHVHSGKRWIDAEVSAAAMTDDCPLTDREL 145

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + L   +EG +  EI+  L ++  T+ NY++S M+KT   +R  A   A
Sbjct: 146 DTLRLTTEGLSVREISTRLHLASGTIRNYLSSAMQKTGGSSRHAAARVA 194


>gi|300778489|ref|ZP_07088347.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum
           ATCC 35910]
 gi|300503999|gb|EFK35139.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum
           ATCC 35910]
          Length = 245

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE+E L ++ EG  S EIA +L IS NTV+ +  +I+ K   K  + A
Sbjct: 189 LSPRELEVLKFVGEGYASKEIADMLSISVNTVSRHRQNILEKLKVKNSTQA 239


>gi|225871440|ref|YP_002747387.1| response regulator [Streptococcus equi subsp. equi 4047]
 gi|225700844|emb|CAW95568.1| putative response regulator [Streptococcus equi subsp. equi 4047]
          Length = 199

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+E L  IS+  ++++I+  L ISR TV+ ++++I  K    +R GA+  A+R  +
Sbjct: 139 LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIRLKL 198

Query: 246 V 246
           +
Sbjct: 199 I 199


>gi|254521823|ref|ZP_05133878.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14]
 gi|219719414|gb|EED37939.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14]
          Length = 230

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L W++ G+   EIA  LG+S  TV N++    ++    T + A+  A R  
Sbjct: 168 LSTREREVLRWVAAGRRQAEIATTLGLSARTVENHLRHARQRLGVATTAQAVRAATRRG 226


>gi|126433524|ref|YP_001069215.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS]
 gi|126233324|gb|ABN96724.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS]
          Length = 526

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G T+ EIA  L IS  T  N++     K     R  A  YA+ + +
Sbjct: 462 LTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAASLYALEHGL 521

Query: 246 V 246
           +
Sbjct: 522 L 522


>gi|309790732|ref|ZP_07685281.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308227223|gb|EFO80902.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 193

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +LT RE E L  I++GKT+ EI  +L IS  TV  ++  I+ K     R+ A   A+
Sbjct: 130 IQLTRREQEVLQLITQGKTNREIGQLLNISVGTVKIHVEHIIAKLGVSDRTQAAVRAI 187


>gi|160895826|ref|YP_001561408.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160361410|gb|ABX33023.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 245

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE+E L  ++ G T DE+A  LG+SR+TV  ++  I  K    +R+
Sbjct: 180 LSARELEVLRLVARGHTLDEVARQLGVSRHTVRTFVRRIYGKLQVSSRT 228


>gi|114764255|ref|ZP_01443483.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114543203|gb|EAU46220.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 234

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT ++   L+ I EGK + +IA  L I+  TV  ++ +IMRK    +R+ A+  A   N
Sbjct: 164 LTNQQARILSLICEGKLNKQIAYDLTIAETTVKAHVTAIMRKLGVHSRTQAVLIAQEAN 222


>gi|86740955|ref|YP_481355.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86567817|gb|ABD11626.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 224

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE + L  I+EG T+ +IA  + +S  TV NY+++I+ K    +R+ A  YA R
Sbjct: 168 RERQILVLIAEGLTNRQIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 221


>gi|313105659|ref|ZP_07791923.1| hypothetical protein PA39016_000100019 [Pseudomonas aeruginosa
           39016]
 gi|310878425|gb|EFQ37019.1| hypothetical protein PA39016_000100019 [Pseudomonas aeruginosa
           39016]
          Length = 128

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A   A+ F  +    GK   L  RE++C+  I+ G+TS E+A  LG+   TV   + +  
Sbjct: 5   ATITAHGFTGF---LGKGLSL--RELQCVLGIAAGRTSKELARDLGMQPGTVGKRVLAAT 59

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R+  +A A+R  ++
Sbjct: 60  TKLGVTRRAALVAEAMRRGLI 80


>gi|282861875|ref|ZP_06270938.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562900|gb|EFB68439.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +A
Sbjct: 148 GRGSTLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWA 207

Query: 241 VRNN 244
           VR+ 
Sbjct: 208 VRHG 211


>gi|254693131|ref|ZP_05154959.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 3
           str. Tulya]
 gi|261213372|ref|ZP_05927653.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260914979|gb|EEX81840.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G   YA+ N +
Sbjct: 149 LSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208


>gi|108797883|ref|YP_638080.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866977|ref|YP_936929.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS]
 gi|108768302|gb|ABG07024.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS]
 gi|119693066|gb|ABL90139.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS]
          Length = 526

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE E L  +++G T+ EIA  L IS  T  N++     K     R  A  YA+
Sbjct: 458 RQGALTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAASLYAL 517

Query: 242 RNNIV 246
            + ++
Sbjct: 518 EHGLL 522


>gi|85703125|ref|ZP_01034229.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
 gi|85672053|gb|EAQ26910.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
          Length = 251

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E L W+ +GKT  +IA+I+G++ +TV  ++       + +T + A+  A   N 
Sbjct: 186 LTPRQREVLGWVGDGKTVQDIAIIMGLTSDTVEKHLRLARHALSVETTAQAVLKAAFQNQ 245

Query: 246 V 246
           +
Sbjct: 246 I 246


>gi|324999341|ref|ZP_08120453.1| transcriptional regulator, LuxR family protein [Pseudonocardia sp.
           P1]
          Length = 595

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E LT +  G ++ EIA  L I++ T   ++  +M+K  T TR+ A  YA+   +
Sbjct: 101 LSARELEILTMLVVGPSNAEIAGELRITQRTAATHVTHLMQKLGTPTRTAAATYALDTGL 160

Query: 246 V 246
           +
Sbjct: 161 L 161


>gi|304411116|ref|ZP_07392732.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|307301761|ref|ZP_07581519.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
 gi|304350651|gb|EFM15053.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|306913799|gb|EFN44220.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
          Length = 221

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203


>gi|302529018|ref|ZP_07281360.1| response regulator [Streptomyces sp. AA4]
 gi|302437913|gb|EFL09729.1| response regulator [Streptomyces sp. AA4]
          Length = 220

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT REV+ L  ++ G+ + EIA  L +S  TV  ++  I  KT   TR+ A+ YA
Sbjct: 159 LTAREVDVLKLVAGGRRNREIARELQVSEATVKTHVNRIFAKTGCGTRAQAVRYA 213


>gi|297158406|gb|ADI08118.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT REVE L  +++G  + EIA  + ++  TV NY+ +I+ K   + R+ A+  A
Sbjct: 139 DNPLTPREVEVLRLVAQGAEATEIAAQVHLTAGTVRNYLTAIVTKLNARNRTDAVRIA 196


>gi|282863505|ref|ZP_06272564.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561840|gb|EFB67383.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 209

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S   K   + R 
Sbjct: 138 AADAISAGDSPLTAREAEVLELAADGAPVAEIAARASLSQGTVRNYLSSAASKLGAENRH 197

Query: 235 GAIAYA 240
            A+  A
Sbjct: 198 AAVRLA 203


>gi|271963099|ref|YP_003337295.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270506274|gb|ACZ84552.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 916

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++EG  + EI   L I++ TV+ ++++I+ K    +R+ A A A ++++
Sbjct: 856 LTGREREVLALVAEGLPNREIGERLFIAQKTVSVHVSNILGKLGVSSRTQAAAVARKDDL 915

Query: 246 V 246
           +
Sbjct: 916 L 916


>gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 231

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++
Sbjct: 168 IELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 227

Query: 244 NI 245
            +
Sbjct: 228 GL 229


>gi|163847483|ref|YP_001635527.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222525334|ref|YP_002569805.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668772|gb|ABY35138.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449213|gb|ACM53479.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Chloroflexus sp. Y-400-fl]
          Length = 916

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++EG+++ EIA  L I+ +TV +++ +I  K    +R+ A+A   R  +
Sbjct: 855 LSQREIEVLRLMAEGRSNQEIAGHLIIAISTVKSHVNNIFSKLGVASRTQAVARGRRLGL 914

Query: 246 V 246
           +
Sbjct: 915 I 915


>gi|297191940|ref|ZP_06909338.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151138|gb|EFH30974.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 204

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +  LT RE+  L   ++G+   ++A  L +S  TV NY+AS++RK   + R  AI  A
Sbjct: 141 EMPLTQRELSVLALAAKGEPIADVAASLHLSEGTVRNYMASVIRKVGARNRVDAIRIA 198


>gi|269836898|ref|YP_003319126.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786161|gb|ACZ38304.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 242

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L  +++G ++ EIA  L I+  TV N+I ++ +K   + R  A+  AVR 
Sbjct: 170 LPLSPREMEVLDCVAQGLSNKEIANTLYITEQTVKNHITAVYKKLHVQDRVQALTCAVRR 229

Query: 244 N 244
            
Sbjct: 230 G 230


>gi|281419800|ref|ZP_06250799.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
 gi|281406176|gb|EFB36856.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
          Length = 318

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +L+ RE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ 
Sbjct: 248 DEQLSDREKDVIVALVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPAGLTIYAIV 307

Query: 243 NNIV 246
           NN+V
Sbjct: 308 NNLV 311


>gi|220906824|ref|YP_002482135.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863435|gb|ACL43774.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L+ I  G ++ EIA  L IS  TV N+I+ I+ +   + R+ A  +A R
Sbjct: 157 LTPREREVLSLIVAGASNREIAEALYISERTVKNHISRILSQLHLRDRTQAAMFASR 213


>gi|171316398|ref|ZP_02905617.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098431|gb|EDT43234.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 515

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489

Query: 245 IV 246
           IV
Sbjct: 490 IV 491


>gi|217972053|ref|YP_002356804.1| LuxR family transcriptional regulator [Shewanella baltica OS223]
 gi|217497188|gb|ACK45381.1| transcriptional regulator, LuxR family [Shewanella baltica OS223]
          Length = 221

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203


>gi|119026460|ref|YP_910305.1| two-component response regulator [Bifidobacterium adolescentis ATCC
           15703]
 gi|118766044|dbj|BAF40223.1| two-component response regulator [Bifidobacterium adolescentis ATCC
           15703]
          Length = 218

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +L+ RE++ L   ++   + EIA  LGIS NTV +YI  + +K  TK RS
Sbjct: 157 QLSPRELQVLRLYTQNNNTSEIASQLGISSNTVFSYIHRVSKKIGTKNRS 206


>gi|159901708|ref|YP_001547954.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894747|gb|ABX07826.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 225

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE +      +G TS +IA  L +S  TV  Y AS++RK   +T++  I +AVR  
Sbjct: 151 LTSRERDVFAGAMQGNTSVQIAAHLCLSVRTVEAYRASMLRKLGLRTQTDLICFAVRTG 209


>gi|28868117|ref|NP_790736.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213970211|ref|ZP_03398342.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301385917|ref|ZP_07234335.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059557|ref|ZP_07251098.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130881|ref|ZP_07256871.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28851354|gb|AAO54431.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213925092|gb|EEB58656.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|331018801|gb|EGH98857.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 207

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ + L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS A A
Sbjct: 147 LTTRQKQVLGLVAAGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRSAAAA 199


>gi|115359991|ref|YP_777129.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285279|gb|ABI90795.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 514

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489

Query: 245 IV 246
           IV
Sbjct: 490 IV 491


>gi|331085012|ref|ZP_08334099.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408712|gb|EGG88177.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 208

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 45/86 (52%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P  R++L+++      +      +F+       + ++LT RE   +  +++G+++ EIA 
Sbjct: 112 PAIRVVLKEQTVFGAEITTRIPKLFEPQKAFDYETYQLTSREFSIIELVADGRSNREIAE 171

Query: 209 ILGISRNTVNNYIASIMRKTATKTRS 234
            L +   TV NY++SI+ K   + R+
Sbjct: 172 ALYLGEGTVRNYLSSILEKLELRDRT 197


>gi|315503162|ref|YP_004082049.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315409781|gb|ADU07898.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 225

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE E L  ++ G ++ EIA +L +   TV  +++ ++ K   + R  A+ 
Sbjct: 154 HDAATADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVV 213

Query: 239 YAVRNNIV 246
           +A  + +V
Sbjct: 214 FAYEHGVV 221


>gi|134101531|ref|YP_001107192.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291008188|ref|ZP_06566161.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914154|emb|CAM04267.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 239

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  L+ REVE    I +G ++ EIA  L I+  TV N++ +I+ K     R+ A A+ 
Sbjct: 154 GSDHGLSRREVEIAVLIEQGLSNQEIAHRLCIALATVKNHVHNILEKLGLHARADAAAWT 213

Query: 241 VRNNI 245
            R  +
Sbjct: 214 RRQRL 218


>gi|172062446|ref|YP_001810097.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994963|gb|ACB65881.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 514

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489

Query: 245 IV 246
           IV
Sbjct: 490 IV 491


>gi|56696847|ref|YP_167209.1| ATP-dependent transcription regulator LuxR [Ruegeria pomeroyi
           DSS-3]
 gi|56678584|gb|AAV95250.1| autoinducer-binding transcriptional regulator, LuxR family
           [Ruegeria pomeroyi DSS-3]
          Length = 249

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT+ +IA+++G++  TV  ++       + +T + A+  A  +N
Sbjct: 184 LTRRQREALQWVGDGKTTQDIAILMGLTAATVEKHLRLAREALSVETTAQAVLKAALHN 242


>gi|308175073|ref|YP_003921778.1| hypothetical protein BAMF_3182 [Bacillus amyloliquefaciens DSM 7]
 gi|307607937|emb|CBI44308.1| RBAM_030520 [Bacillus amyloliquefaciens DSM 7]
 gi|328555041|gb|AEB25533.1| hypothetical protein BAMTA208_16905 [Bacillus amyloliquefaciens
           TA208]
          Length = 215

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWI 197
           RIR  +  +F  G  IL+D +     L   + ++F+  +  H   + + T RE+  ++ I
Sbjct: 110 RIRDAIKSVF-NGHSILQDTV-----LDKIKDSLFRPAEAAHQIDESQFTERELSIMSLI 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G ++ EI+  L IS  T  NYI+SI+ KT  + R+    Y +   +
Sbjct: 164 AKGFSNREISKQLFISEGTTANYISSILGKTGLEHRTQIAIYYITGKV 211


>gi|298250029|ref|ZP_06973833.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297548033|gb|EFH81900.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 855

 Score = 40.8 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  +S+G ++ +IA  L IS  TV+ ++ SI  K A  +R+    YA+ ++
Sbjct: 794 DLSQRELEVLHLLSQGLSNKQIAAQLVISPRTVDAHVRSIYNKLALNSRAAVARYALEHH 853

Query: 245 I 245
           +
Sbjct: 854 L 854


>gi|291485935|dbj|BAI87010.1| hypothetical protein BSNT_05150 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 200

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   + GKT+ +I + L +S+ TV NYI+ I++K   K R+ A + A
Sbjct: 140 LTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLHAKNRTEAASIA 194


>gi|253574622|ref|ZP_04851962.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845668|gb|EES73676.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 247

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 183 DFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           D E  T RE+E ++ I++G ++ EIA  + IS  TV NYI SI+ KT  + R+
Sbjct: 183 DLERFTERELEVMSRIAKGLSNKEIAKEIFISEGTVANYITSILNKTGLEHRT 235


>gi|324997340|ref|ZP_08118452.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 232

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I+EG ++ EIA  L +   TV  ++  +  K   + R+ A+ YA R+ +
Sbjct: 169 LTPREVEVLALIAEGLSNTEIARRLVVGEATVKTHVNHLFAKAGLRDRAQAVGYAYRHGL 228


>gi|319901028|ref|YP_004160756.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
 gi|319416059|gb|ADV43170.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
          Length = 200

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  +++G  + EIA  L IS  TV ++  +I  K   K+ SG   YA+ + 
Sbjct: 134 ELSAREIEVLVLVTKGFINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTIYAIMHG 193

Query: 245 IV 246
            V
Sbjct: 194 YV 195


>gi|307315521|ref|ZP_07595072.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|306898775|gb|EFN29433.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 243

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+ RE +CL  ++ G+ S +IA  LGIS N V  Y+ S   K    T   A+A A
Sbjct: 176 GRYRTLSRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKA 235


>gi|288904765|ref|YP_003429986.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|288731490|emb|CBI13044.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
          Length = 198

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +D  L+ +E   L  IS GKT+ EIA  L +S  TV NYI+SI+ K +   R  A   A
Sbjct: 134 QDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEATRIA 192


>gi|241763194|ref|ZP_04761253.1| transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN]
 gi|241367693|gb|EER61959.1| transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN]
          Length = 190

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E   ++  GKTS +IA  L IS  TV+ + A +MRK    T S  +A
Sbjct: 132 LTAREREVAQFLMTGKTSKQIARDLAISARTVDAHRARLMRKLEVSTTSALVA 184


>gi|191638216|ref|YP_001987382.1| Response regulator [Lactobacillus casei BL23]
 gi|239631678|ref|ZP_04674709.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066277|ref|YP_003788300.1| CitB family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|190712518|emb|CAQ66524.1| Response regulator [Lactobacillus casei BL23]
 gi|239526143|gb|EEQ65144.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438684|gb|ADK18450.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382247|gb|AEA53723.1| Two component transcriptional regulator, LuxR family [Lactobacillus
           casei LC2W]
 gi|327385444|gb|AEA56918.1| Two component transcriptional regulator, LuxR family [Lactobacillus
           casei BD-II]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A+  A +N
Sbjct: 141 LTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKN 198


>gi|24372453|ref|NP_716495.1| LuxR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24346436|gb|AAN53940.1|AE015531_6 transcriptional regulator, LuxR family [Shewanella oneidensis MR-1]
          Length = 255

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 190 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 237


>gi|148545863|ref|YP_001265965.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148509921|gb|ABQ76781.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
          Length = 258

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +L+ R++E    +S+GKT+ +IA  LGI+ NTV  Y++ ++R T    R+
Sbjct: 189 KLSPRQLEVARLVSKGKTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 238


>gi|300782912|ref|YP_003763203.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792426|gb|ADJ42801.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELTGRE E L  I+ G ++  IA  L +S  TV N+I+++  K     R+ AI  A
Sbjct: 151 ELTGREREVLALIAAGHSNSLIASTLCLSPKTVRNHISNVFAKLHVADRAEAIVRA 206


>gi|296314242|ref|ZP_06864183.1| nitrate/nitrite response regulator protein NarL [Neisseria
           polysaccharea ATCC 43768]
 gi|296839039|gb|EFH22977.1| nitrate/nitrite response regulator protein NarL [Neisseria
           polysaccharea ATCC 43768]
          Length = 218

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+ +N+
Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHHNV 212


>gi|320011566|gb|ADW06416.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +A
Sbjct: 148 GRGSTLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWA 207

Query: 241 VRNN 244
           VR+ 
Sbjct: 208 VRHG 211


>gi|239981000|ref|ZP_04703524.1| response regulatory protein [Streptomyces albus J1074]
 gi|291452866|ref|ZP_06592256.1| response regulatory protein [Streptomyces albus J1074]
 gi|291355815|gb|EFE82717.1| response regulatory protein [Streptomyces albus J1074]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ELT RE + L  +++G  + EIA  L IS  TV  ++  I +K   +TR+GA+A
Sbjct: 157 ELTPRERDILRHLTQGLGNREIARALFISEATVKTHLGRIYQKLGVETRAGAVA 210


>gi|218671400|ref|ZP_03521070.1| two-component response regulator protein [Rhizobium etli GR56]
          Length = 223

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G D  LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I
Sbjct: 143 VEEGSD-PLTPRERDTLGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGIATTAGLI 201

Query: 238 AYAVRNNI 245
            YA+ + I
Sbjct: 202 RYALDHGI 209


>gi|311895697|dbj|BAJ28105.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E    I+ G  +D IA  L +SR+TV N+I ++  K   + R+ A+  A  + 
Sbjct: 157 DLTPRETEVWRLIATGLDNDAIAAALDLSRSTVKNHITALFAKLDVRDRAQAVIAAYESG 216

Query: 245 IV 246
           +V
Sbjct: 217 LV 218


>gi|303241329|ref|ZP_07327834.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302591168|gb|EFL60911.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 216

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++   T +E+E +  I++GK++ +IA  + +S+  + N I  I  KT    R+    YA+
Sbjct: 152 QNITFTSKELEIIDLIAKGKSNTDIAKEVFLSKGRIANIITRIFEKTRLNDRTELAVYAI 211

Query: 242 RNNIV 246
           +N+IV
Sbjct: 212 KNHIV 216


>gi|296332888|ref|ZP_06875348.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673234|ref|YP_003864906.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150168|gb|EFG91057.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411478|gb|ADM36597.1| two-component response regulator (paired with YdfH) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT +EV  L  I++G  S  IA  LG+S  TV + + SI  K    +R+ A+  A++
Sbjct: 146 DTQLTEKEVIVLKAIAKGFKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQ 205

Query: 243 NNIV 246
             I+
Sbjct: 206 RGIL 209


>gi|256819682|ref|YP_003140961.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
 gi|256581265|gb|ACU92400.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
          Length = 234

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DF LT RE E LT  S+G +S EIA  L IS  TVN +  +I  K   ++   AI  A R
Sbjct: 171 DFVLTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDLARR 230

Query: 243 NNIV 246
             I+
Sbjct: 231 KGIL 234


>gi|261409282|ref|YP_003245523.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329924974|ref|ZP_08279920.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|261285745|gb|ACX67716.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328940263|gb|EGG36593.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +++GK++ +IA  L I   TV  ++ +I+ K   + R+ A  YA +N 
Sbjct: 152 DLTDREMEVLRLLAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNG 211

Query: 245 I 245
           +
Sbjct: 212 L 212


>gi|160873996|ref|YP_001553312.1| LuxR family transcriptional regulator [Shewanella baltica OS195]
 gi|160859518|gb|ABX48052.1| transcriptional regulator, LuxR family [Shewanella baltica OS195]
 gi|315266225|gb|ADT93078.1| transcriptional regulator, LuxR family [Shewanella baltica OS678]
          Length = 221

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203


>gi|160879008|ref|YP_001557976.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427674|gb|ABX41237.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 216

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 151 GRIILRDRLWEIGLLAAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           G  ++ D + E  LL   ++ N +K   +   K+ E    +++ L  ++ GK++ EIA  
Sbjct: 121 GLFVVHDSIKEYILLQMQRSSNEYKKISLST-KELEFDSTDLDVLKLLTRGKSNSEIASE 179

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  S  TV N I+ ++  T TK R+    +A++++++
Sbjct: 180 ICYSEGTVKNRISRMLEMTGTKDRTQLAIFALQSSVI 216


>gi|296128716|ref|YP_003635966.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296020531|gb|ADG73767.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  ++ G  +DEIA  L +SR TV  ++++++ K   + R  A+ YA
Sbjct: 158 LTEREQDVLALVARGLNNDEIAAELVVSRATVKTHVSNLLAKLGLRDRVQAVVYA 212


>gi|269219961|ref|ZP_06163815.1| two-component system response regulator [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269210597|gb|EEZ76937.1| two-component system response regulator [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 230

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A +A   ++ D H      LT RE+E L  +++G T+ EIA  L ++  T+  +I  I  
Sbjct: 147 AKEATAMRATDPHILDG--LTEREIEVLKLVAQGLTNGEIAKTLTVAEATIKTHIGHIFY 204

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   + R  A+  A    +V
Sbjct: 205 KLGARDRVQAVVLAYEAGLV 224


>gi|260437475|ref|ZP_05791291.1| transcriptional regulator, LuxR family [Butyrivibrio crossotus DSM
           2876]
 gi|292810108|gb|EFF69313.1| transcriptional regulator, LuxR family [Butyrivibrio crossotus DSM
           2876]
          Length = 217

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  + EGKT+ EIA  L ++ ++V  YI  ++ KT    R+  +  AV   
Sbjct: 144 ELSDREMETLRLLCEGKTNAEIAEKLNVAESSVRTYINRMLEKTGYTNRNRLMIAAVGKR 203

Query: 245 IV 246
           +V
Sbjct: 204 MV 205


>gi|259419008|ref|ZP_05742925.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
 gi|259345230|gb|EEW57084.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 147 LTGREQTILLELAQGKSNKEVALTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|254410364|ref|ZP_05024143.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182570|gb|EDX77555.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 212

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G  + EIA  L IS+ TV N+I +I+ +   + R+ A  +A  ++
Sbjct: 150 ELTPREQEILRLIATGANNREIAQTLYISQKTVKNHITNILSRLNLRDRTQAAIWANSHS 209

Query: 245 I 245
           I
Sbjct: 210 I 210


>gi|170697201|ref|ZP_02888295.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137821|gb|EDT06055.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 518

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489

Query: 245 IV 246
           IV
Sbjct: 490 IV 491


>gi|78066080|ref|YP_368849.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966825|gb|ABB08205.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|116494716|ref|YP_806450.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116104866|gb|ABJ70008.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A+  A +N
Sbjct: 141 LTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKN 198


>gi|23006109|ref|ZP_00048587.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 56

 Score = 40.8 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L W+S GK S +I  ILG+S  TV  ++  I  K   + R+ A A A R+
Sbjct: 2   LLWLSRGKASRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAIAARH 51


>gi|300744173|ref|ZP_07073192.1| DNA-binding response regulator [Rothia dentocariosa M567]
 gi|300379898|gb|EFJ76462.1| DNA-binding response regulator [Rothia dentocariosa M567]
          Length = 208

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 33/70 (47%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + +  W     LTGRE E L       +  EIA +LG+S  TV N++++ M K     R 
Sbjct: 137 AEEAKWQGSSPLTGRETEVLRAAETAGSVKEIAGMLGLSSGTVRNHLSAAMAKIDAINRH 196

Query: 235 GAIAYAVRNN 244
            A+  A  N 
Sbjct: 197 EAVRIARDNG 206


>gi|223934665|ref|ZP_03626585.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896620|gb|EEF63061.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REV+ L+ ++ G  + EIA +L I+ +T  +++ SI+ K     R+ A+  A++  
Sbjct: 146 QLSPREVQVLSELARGLANKEIADVLNITEHTTKDHLKSILAKLRVADRTEAVTVALQRG 205

Query: 245 IV 246
           I+
Sbjct: 206 II 207


>gi|270308323|ref|YP_003330381.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270154215|gb|ACZ62053.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 232

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A +A M KS +      +E LT RE E L  +S+G T  EIA  L IS  TV  + A++M
Sbjct: 133 AIEAYMEKSAEATSLDPYETLTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMM 192

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK   + ++  + YA++  I+
Sbjct: 193 RKLDLRNQTQLLRYALQRGII 213


>gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 242

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ NN+
Sbjct: 181 FTPREESVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENNL 240

Query: 246 V 246
           V
Sbjct: 241 V 241


>gi|186682209|ref|YP_001865405.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464661|gb|ACC80462.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 232

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 37/77 (48%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL    A+   + +    K  E+T RE E L  I  G T+ EIA  L I+  TV  ++ S
Sbjct: 140 LLVTEAASASANQNSASSKPSEITAREQEVLCLIGVGATNREIAQQLYITEGTVKTHVTS 199

Query: 224 IMRKTATKTRSGAIAYA 240
           I+ +   K RS    YA
Sbjct: 200 ILSRLNLKNRSQLAIYA 216


>gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0101]
          Length = 248

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + 
Sbjct: 186 EFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTELVRYALEHG 245

Query: 245 IV 246
           +V
Sbjct: 246 LV 247


>gi|239816962|ref|YP_002945872.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803539|gb|ACS20606.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L+ +  G++S +IA  LG+S  TV  +  SI R+   + ++  I YAV +
Sbjct: 150 LTPRESEILSALGRGESSKQIARDLGLSVRTVEAHRQSIKRRLGIEGQAELIKYAVEH 207


>gi|238920403|ref|YP_002933918.1| csgAB operon transcriptional regulatory protein [Edwardsiella
           ictaluri 93-146]
 gi|238869972|gb|ACR69683.1| probable csgAB operon transcriptional regulatory protein
           [Edwardsiella ictaluri 93-146]
          Length = 206

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L  + +G ++ +I+ IL IS+NTV  ++ +I +K + K R  A+ +A
Sbjct: 146 LTLRELEVLKAMQQGASNLDISRILYISKNTVRTHVYNIFKKISVKNRIQAVIWA 200


>gi|120597637|ref|YP_962211.1| response regulator receiver protein [Shewanella sp. W3-18-1]
 gi|146294224|ref|YP_001184648.1| response regulator receiver protein [Shewanella putrefaciens CN-32]
 gi|120557730|gb|ABM23657.1| transcriptional regulator, LuxR family [Shewanella sp. W3-18-1]
 gi|145565914|gb|ABP76849.1| transcriptional regulator, LuxR family [Shewanella putrefaciens
           CN-32]
          Length = 209

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 144 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 191


>gi|270341116|emb|CAQ15948.2| vR protein [Pseudomonas fuscovaginae]
          Length = 239

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W    KT+ EI  IL +S  TV  +  +I RK    +R  A+A A++ ++
Sbjct: 177 LTPRELEILHWAWAEKTTWEIGKILSLSEPTVEFHFKNIRRKLKVTSRRLAVARAIQLDL 236

Query: 246 V 246
           +
Sbjct: 237 I 237


>gi|152999376|ref|YP_001365057.1| response regulator receiver protein [Shewanella baltica OS185]
 gi|151363994|gb|ABS06994.1| response regulator receiver protein [Shewanella baltica OS185]
          Length = 221

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203


>gi|37223230|gb|AAQ90214.1| LuxR [Vibrio mimicus]
 gi|37223256|gb|AAQ90231.1| LuxR [Aliivibrio fischeri]
          Length = 224

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           +LT RE ECL W  EGK+S +I+ ILG S  TV
Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSERTV 216


>gi|54024206|ref|YP_118448.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54015714|dbj|BAD57084.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 222

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G ++ EI   L IS  TV  ++ +IMRK +  TR+GA+  A +  +
Sbjct: 162 LTDRETKVLELLARGMSNREIGGRLYISETTVKFHVRNIMRKLSASTRAGAVYEASKLGL 221

Query: 246 V 246
           +
Sbjct: 222 I 222


>gi|319427568|gb|ADV55642.1| transcriptional regulator of curli operon, CsgD [Shewanella
           putrefaciens 200]
          Length = 221

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203


>gi|310287962|ref|YP_003939221.1| response regulator of two-component system [Bifidobacterium bifidum
           S17]
 gi|309251899|gb|ADO53647.1| response regulator of two-component system [Bifidobacterium bifidum
           S17]
          Length = 277

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +L+A+Q           G+D EL   +GRE E +  I+ G T  E+A  L IS  TV  +
Sbjct: 192 VLSAFQGAPMDGAGGERGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETH 251

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +++++RK     R+    +A    IV
Sbjct: 252 MSNVLRKLQLSNRTELTRWAADRRIV 277


>gi|290509972|ref|ZP_06549342.1| LuxR family transcriptional regulator, maltose regulon positive
           regulatory protein [Klebsiella sp. 1_1_55]
 gi|289776688|gb|EFD84686.1| LuxR family transcriptional regulator, maltose regulon positive
           regulatory protein [Klebsiella sp. 1_1_55]
          Length = 921

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D+H     EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+
Sbjct: 853 SPDIH----GELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRT 908

Query: 235 GAIAYAVRNNIV 246
            A++ A+   ++
Sbjct: 909 QAMSRALEMKLL 920


>gi|302546480|ref|ZP_07298822.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302464098|gb|EFL27191.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 218

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 157 LTDREREVLGLIADGRSNREIARRLVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 216


>gi|226940995|ref|YP_002796069.1| NarL [Laribacter hongkongensis HLHK9]
 gi|226715922|gb|ACO75060.1| NarL [Laribacter hongkongensis HLHK9]
          Length = 218

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EIA  L ++ +TV  ++ +I+RK    +R  A  +AV N +
Sbjct: 155 LTPRERETLRHLARGASNKEIARSLDLAESTVKVHVQNILRKLNLSSRVQAAVFAVENEL 214


>gi|29834041|ref|NP_828675.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29611166|dbj|BAC75210.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  LT RE+  L+  + G +  EIA  L +S  TV NY+++I RKT  + R  AI
Sbjct: 160 EMPLTRRELSVLSLAAGGASVAEIAGSLHLSHGTVRNYMSAITRKTGARNRIDAI 214


>gi|92115904|ref|YP_575633.1| two component LuxR family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91798798|gb|ABE61173.1| two component transcriptional regulator, LuxR family [Nitrobacter
           hamburgensis X14]
          Length = 231

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K    +R+ A+  A R
Sbjct: 161 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVIAAAR 217


>gi|311112763|ref|YP_003983985.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310944257|gb|ADP40551.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 208

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 33/70 (47%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + +  W     LTGRE E L       +  EIA +LG+S  TV N++++ M K     R 
Sbjct: 137 AEEAKWQGSSPLTGRETEVLRAAETAGSVKEIAGMLGLSSGTVRNHLSAAMAKIDAINRH 196

Query: 235 GAIAYAVRNN 244
            A+  A  N 
Sbjct: 197 EAVRIARDNG 206


>gi|302535350|ref|ZP_07287692.1| two-component system response regulator [Streptomyces sp. C]
 gi|302444245|gb|EFL16061.1| two-component system response regulator [Streptomyces sp. C]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 174 KSYDVHWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           K  DV    D     ELT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K  
Sbjct: 140 KLSDVQRAADPSGVSELTERETEVLVLIAQGLSNGEIADRLLVAESTIKTHVSRILVKLG 199

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R+ A  YA    +V
Sbjct: 200 LRDRTQAAVYAYETRLV 216


>gi|302879092|ref|YP_003847656.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302581881|gb|ADL55892.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 491

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ R ++ +  I+ G TS +IA  L IS+ TV  +  ++MRK    + +   AYA++N 
Sbjct: 428 KLSRRHLDVIGLIAAGLTSAQIAARLNISQTTVITHRRNLMRKLGLHSAAELTAYAIKNK 487

Query: 245 IV 246
           IV
Sbjct: 488 IV 489


>gi|291299414|ref|YP_003510692.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568634|gb|ADD41599.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG ++ E+A  L +S  TV  +++ ++ K   + R+ A+  A  + +
Sbjct: 158 LTPRETEVLRLVAEGLSNPELAARLTVSEETVKTHVSRVLHKLGLRDRTQAVVAAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|206577056|ref|YP_002240258.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342]
 gi|206566114|gb|ACI07890.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342]
          Length = 921

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D+H     EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+
Sbjct: 853 SPDIH----GELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRT 908

Query: 235 GAIAYAVRNNIV 246
            A++ A+   ++
Sbjct: 909 QAMSRALEMKLL 920


>gi|15672873|ref|NP_267047.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723822|gb|AAK04989.1|AE006323_4 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406436|gb|ADZ63507.1| two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 209

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  ++ G ++ EIA  L IS  TV  ++++I  K     R+ A  YA++++
Sbjct: 148 DLSKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHH 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|325276680|ref|ZP_08142406.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|324098187|gb|EGB96307.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 254

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +L+ R++E    +S+GKT+ +IA  LGI+ NTV  Y++ ++R T    R+
Sbjct: 185 KLSPRQLEVARLVSKGKTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 234


>gi|254496211|ref|ZP_05109106.1| lipolytic enzyme / transcription regulator protein [Legionella
           drancourtii LLAP12]
 gi|254354603|gb|EET13243.1| lipolytic enzyme / transcription regulator protein [Legionella
           drancourtii LLAP12]
          Length = 505

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE++CL+ IS+G T  +I+  L +S  TVN +  SI  K      + A++ A R
Sbjct: 443 QLTPRELQCLSMISKGMTIKKISEYLHLSSETVNTHAKSIRTKMNCVNITEAVSKAFR 500


>gi|183982880|ref|YP_001851171.1| putative regulatory protein [Mycobacterium marinum M]
 gi|183176206|gb|ACC41316.1| conserved hypothetical regulatory protein [Mycobacterium marinum M]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT REVE L  ++ G+T+ +IA  L IS  TV +++  ++RK     R+ A +  VR
Sbjct: 331 LTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVR 387


>gi|167562980|ref|ZP_02355896.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
 gi|167570172|ref|ZP_02363046.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|134291551|ref|YP_001115320.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|161522793|ref|YP_001585722.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189348364|ref|YP_001941560.1| signal transduction response regulator [Burkholderia multivorans
           ATCC 17616]
 gi|134134740|gb|ABO59065.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
 gi|160346346|gb|ABX19430.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189338502|dbj|BAG47570.1| signal transduction response regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 212

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  ++ G    EIA  LGI+  TV+ Y A +++K   +T +  I YA+ + I
Sbjct: 149 LTAREKAVLEGLACGNGISEIASRLGINAKTVSTYKARLLKKLEVRTEAALIRYALEHQI 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|288917777|ref|ZP_06412139.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288350833|gb|EFC85048.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  ++EG  + EI   L  S  TV N +  + R+   + RS A+A+A+R  +
Sbjct: 248 LSERELTVLRLVAEGHDTQEIGRRLNYSERTVKNVLQDVTRRFGLRNRSHAVAFALRQGL 307

Query: 246 V 246
           +
Sbjct: 308 L 308


>gi|291302120|ref|YP_003513398.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571340|gb|ADD44305.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +T + +GK+++EI+ +L IS  T   +++  M K  ++ R+  +  A  + +
Sbjct: 155 LTPREREVVTLVGQGKSNEEISRLLHISHTTAKTHVSRAMTKLGSRDRAQLVVAAYESGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|220914877|ref|YP_002490185.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
 gi|219952628|gb|ACL63018.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 217

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LTGR++  L  ++ G+T   IA +L +S  T+ N +A+I R+     ++G + +A+R
Sbjct: 146 RLTGRQLRILQLLAGGQTYRRIADLLLLSVKTIANEVATIGRQVQVPDKAGMVRFAIR 203


>gi|220914880|ref|YP_002490188.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
 gi|219952631|gb|ACL63021.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 211

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LTGRE++    +S GK+ + IA  L +S  TV N  +S+ RK   ++ S  I  A+R+
Sbjct: 148 LALTGRELQIFLLLSRGKSYEMIAKYLSLSYKTVANTCSSMRRKLGAESLSELIRLAIRH 207

Query: 244 N 244
           +
Sbjct: 208 H 208


>gi|152994713|ref|YP_001339548.1| two component LuxR family transcriptional regulator [Marinomonas
           sp. MWYL1]
 gi|150835637|gb|ABR69613.1| two component transcriptional regulator, LuxR family [Marinomonas
           sp. MWYL1]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV  L  ++ G ++ EIA +L IS  TV  +  ++  K    T +G I YA+ N 
Sbjct: 151 DLTKREVAVLKALAAGLSNKEIAQLLNISVRTVETHRQNLKNKLDIHTSAGLIKYALANQ 210

Query: 245 IV 246
           ++
Sbjct: 211 LI 212


>gi|117921851|ref|YP_871043.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614183|gb|ABK49637.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3]
          Length = 221

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203


>gi|126175697|ref|YP_001051846.1| response regulator receiver protein [Shewanella baltica OS155]
 gi|125998902|gb|ABN62977.1| transcriptional regulator, LuxR family [Shewanella baltica OS155]
          Length = 249

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 184 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 231


>gi|332305146|ref|YP_004432997.1| transcriptional regulator, LuxR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172475|gb|AEE21729.1| transcriptional regulator, LuxR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 887

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT +E E L ++S G ++ EIA  L  S+ TV N++ASI+ K     R  A+
Sbjct: 816 LTAKEQEVLRYLSTGSSNKEIASALSRSQRTVENHVASILTKLNVSNRMEAM 867


>gi|330966354|gb|EGH66614.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 207

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ + L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS A A
Sbjct: 147 LTTRQKQVLGLVAAGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRSAAAA 199


>gi|308187717|ref|YP_003931848.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans
           C9-1]
 gi|308058227|gb|ADO10399.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans
           C9-1]
          Length = 209

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A Y AN   S D       +LTGRE + L  ++ G ++ EIA  L IS  TV  +I ++
Sbjct: 133 VARYLANRQHSADPLR----QLTGRECDVLQEVARGLSNKEIAANLHISEETVKVHIRNL 188

Query: 225 MRKTATKTRSGA 236
           +RK   ++R  A
Sbjct: 189 LRKLDVRSRVAA 200


>gi|284041724|ref|YP_003392064.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945945|gb|ADB48689.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 218

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  ++ G ++ EIA  L +S  TV  +++ ++RK   + R  A+ +A  + 
Sbjct: 153 ELTERELDVLRLLARGLSNGEIAAQLFVSGATVKTHVSHLLRKLCLRDRVQAVVFAYDSG 212

Query: 245 IV 246
           +V
Sbjct: 213 LV 214


>gi|261378734|ref|ZP_05983307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea
           ATCC 14685]
 gi|269144889|gb|EEZ71307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea
           ATCC 14685]
          Length = 218

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+ +N+
Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHHNV 212


>gi|220909919|ref|YP_002485230.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866530|gb|ACL46869.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE++ L  + EG ++ EIA  L +S NT+  ++  IM K A   R  A   A+R  
Sbjct: 156 QLSQRELDVLKLMVEGYSNPEIATKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAG 215

Query: 245 IV 246
           +V
Sbjct: 216 LV 217


>gi|83594724|ref|YP_428476.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577638|gb|ABC24189.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 260

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W + GKTS EIA I GIS  +V  ++ +  +K  T +++ A+  A+   +
Sbjct: 188 LSPREQEMLRWAALGKTSWEIAEIAGISTKSVEFHLDNAKKKLGTYSKTHAVVKALTLGL 247

Query: 246 V 246
           V
Sbjct: 248 V 248


>gi|84622824|ref|YP_450196.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578132|ref|YP_001915061.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84366764|dbj|BAE67922.1| transcriptional regulator ahyR/asaR family [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522584|gb|ACD60529.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 254

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|113969064|ref|YP_732857.1| LuxR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883748|gb|ABI37800.1| transcriptional regulator, LuxR family [Shewanella sp. MR-4]
          Length = 221

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203


>gi|116511719|ref|YP_808935.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125624447|ref|YP_001032930.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|12483697|gb|AAG53723.1|AF172650_3 RrD [Lactococcus lactis subsp. cremoris MG1363]
 gi|116107373|gb|ABJ72513.1| DNA-binding response regulator (Rec-wHTH domains) [Lactococcus
           lactis subsp. cremoris SK11]
 gi|124493255|emb|CAL98222.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071234|gb|ADJ60634.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 209

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  ++ G ++ EIA  L IS  TV  ++++I  K     R+ A  YA++++
Sbjct: 148 DLSKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHH 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|118476625|ref|YP_893776.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415850|gb|ABK84269.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +K  +V+  K  E  LT +E+  L  I+ G  + EIA  +GI+  TV  Y+ +I  K   
Sbjct: 142 YKRKEVYADKVEENNLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGV 201

Query: 231 KTRSGAIAYAVRNNIV 246
            +RS A+A ++   ++
Sbjct: 202 NSRSEAVAVSIERKLI 217


>gi|28558836|ref|NP_788096.1| putative transcriptional regulator [Ruegeria sp. PR1b]
 gi|22726387|gb|AAN05182.1| RC109 [Ruegeria sp. PR1b]
          Length = 258

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L W + GKTS E A+IL +S  T+  YI   + K    T++ A+  A+   +
Sbjct: 193 LTVREKQVLQWAAFGKTSWETAMILELSERTIETYIGKAVAKLEASTKAHAVCKALSLGL 252

Query: 246 V 246
           +
Sbjct: 253 I 253


>gi|317125008|ref|YP_004099120.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589096|gb|ADU48393.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 228

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E L  ++EG ++ EIA  L I+  TV N++ + + K     R  A AY +R  +
Sbjct: 159 VTRRELEILRLVAEGLSNKEIAKRLVITEGTVKNHVHNALEKLHMDNRIQAAAYVIRQGL 218


>gi|306832945|ref|ZP_07466077.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|325977686|ref|YP_004287402.1| nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|304424844|gb|EFM27978.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|325177614|emb|CBZ47658.1| Nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 198

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +D  L+ +E   L  IS GKT+ EIA  L +S  TV NYI+SI+ K +   R  A
Sbjct: 134 QDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEA 188


>gi|296330376|ref|ZP_06872857.1| two-component response regulator (YvfT) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676019|ref|YP_003867691.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152644|gb|EFG93512.1| two-component response regulator (YvfT) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414263|gb|ADM39382.1| two-component response regulator (paired with YvfT) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 200

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   + GKT+ +I + L +S+ TV NYI+ I++K   K R+ A + A
Sbjct: 140 LTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLDAKNRTEAASIA 194


>gi|293491178|gb|ADE45143.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|229154684|ref|ZP_04282799.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342]
 gi|228628632|gb|EEK85344.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342]
          Length = 207

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +K  +V+  K  E  LT +E+  L  I+ G  + EIA  +GI+  TV  Y+ +I  K   
Sbjct: 130 YKRKEVYADKVEENNLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGV 189

Query: 231 KTRSGAIAYAVRNNIV 246
            +RS A+A ++   ++
Sbjct: 190 NSRSEAVAVSIERKLI 205


>gi|330816663|ref|YP_004360368.1| Transcriptional regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
 gi|327369056|gb|AEA60412.1| Transcriptional regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLEISSRTVDIYRARLMRKYGT 168


>gi|307322370|ref|ZP_07601730.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306891988|gb|EFN22814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
          Length = 243

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+ RE +CL  ++ G+ S +IA  LGIS N V  Y+ S   K    T   A+A A
Sbjct: 176 GRYRTLSRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKA 235


>gi|260433332|ref|ZP_05787303.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417160|gb|EEX10419.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 230

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE E L W++EGK+  +I  IL IS  TV  ++ S   K    T + AI  A+
Sbjct: 165 LSRREREILQWVAEGKSQQDIGDILSISHRTVEVHLRSGREKLGALTTAQAIGRAI 220


>gi|253575646|ref|ZP_04852982.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844984|gb|EES72996.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 74

 Score = 40.8 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K R+ A+   ++
Sbjct: 10  FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRAQAVVELIK 68


>gi|196232090|ref|ZP_03130945.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223812|gb|EDY18327.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT RE+E +  ++ G ++ EI + LGI+  T   +++ ++ K     RS A+  A+
Sbjct: 143 KRAPLTPRELEVIRLLARGCSNKEIGMALGIAEITAKIHVSHLLSKMGVLDRSQAVMEAL 202

Query: 242 RNNIV 246
           R+ I+
Sbjct: 203 RHGII 207


>gi|134287108|dbj|BAF50712.1| putative two component regulator [Streptomyces virginiae]
          Length = 277

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+  +V      ELT RE E L  I+ G ++ EIA  L +S +TV +++ +++ K   ++
Sbjct: 201 FRRAEVSDVDPDELTARESEVLDLIARGLSNAEIAGALMLSEHTVKSHVQNLLGKLRLRS 260

Query: 233 RSGAIAYA 240
           R  A+ YA
Sbjct: 261 RVQAVVYA 268


>gi|89274998|gb|ABD65961.1| two-component system response regulator [Streptomyces fungicidicus]
          Length = 223

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  EL+GR +E +  I+ G+T+ EIA  L IS +TV ++++ I  K   + R+    +A 
Sbjct: 154 RSSELSGRALEVVRAIARGRTNQEIAAELFISLSTVKSHLSGIQTKLGVRNRTEIAVWAW 213

Query: 242 RNNIV 246
            N +V
Sbjct: 214 ENRVV 218


>gi|6716341|gb|AAF26601.1|AF110468_3 PsyR [Pseudomonas syringae pv. tabaci]
          Length = 246

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   
Sbjct: 185 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQAVYKAINMG 244

Query: 245 IV 246
           +V
Sbjct: 245 MV 246


>gi|115526486|ref|YP_783397.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520433|gb|ABJ08417.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisA53]
          Length = 247

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 165 LAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           L A      K+  +  G D     +LT  ++E L++++ G ++ +IA   G+S NTV + 
Sbjct: 155 LGASNGRGTKTATIIHGTDDRVIDDLTRPQIELLSYLANGLSNQQIAKERGMSINTVKSQ 214

Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244
           +A++++K     R+ A  +AVRN+
Sbjct: 215 VANVIQKLNVANRTQAALFAVRNS 238


>gi|304405956|ref|ZP_07387614.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345199|gb|EFM11035.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +F L+ REVE L  ++ G  + +IA  L +S  TV NYI++I  K   K R  A AY  R
Sbjct: 152 EFGLSAREVEVLHKLALGLRNQDIAKALYLSEGTVKNYISNIYSKMNVKGRREA-AYKAR 210


>gi|238059473|ref|ZP_04604182.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881284|gb|EEP70112.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 198

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L   + G    E+A  L +S  TV N++  I RKT  +TR  A+  A
Sbjct: 135 DCPLTARETEVLRLTAAGAPVAEVAGSLRLSCGTVRNHLGRIARKTGARTRIEAVRLA 192


>gi|238898715|ref|YP_002924396.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466473|gb|ACQ68247.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 235

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 156 RDRLWEIGLLAAYQA--NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           R++++ + L+  +Q   ++++ +++   K+  L+ RE E L W S GKT  EI+ I+GI 
Sbjct: 137 REKMY-LLLVKTHQKLLSLYEKFEIPTKKNIGLSKRENEILHWASIGKTYQEISKIIGIK 195

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
             ++  ++ +I  K        AI  A
Sbjct: 196 ECSIKFHMKNITNKLGAINSRHAIKLA 222


>gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 231

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++
Sbjct: 168 IELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 227

Query: 244 NI 245
            +
Sbjct: 228 GL 229


>gi|170760443|ref|YP_001786768.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407432|gb|ACA55843.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +N
Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213

Query: 244 NIV 246
           NIV
Sbjct: 214 NIV 216


>gi|149189059|ref|ZP_01867347.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148837022|gb|EDL53971.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 216

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE+E L  +  G ++ +I+  L I+ +TV +++  + RK + K R  AIA+A +N
Sbjct: 155 DLTAREIEILRCLQSGASNLQISEDLFITESTVKSHLYQVFRKLSVKNRLQAIAWANQN 213


>gi|51893866|ref|YP_076557.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857555|dbj|BAD41713.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E+T RE+E L  I++G ++ EI   L I   TV  +++ ++ K   + R+    YA++N 
Sbjct: 149 EITPRELEVLKLIAQGLSNKEIGERLFIGERTVKTHVSHLLEKLQLQDRTQLAIYALQNK 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|294625280|ref|ZP_06703918.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292600401|gb|EFF44500.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|317049077|ref|YP_004116725.1| LuxR family two component transcriptional regulator [Pantoea sp.
           At-9b]
 gi|316950694|gb|ADU70169.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           At-9b]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 179 HWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           H    F ELT RE++ L  ++ G ++ EIA  L IS  TV  +I +++RK   ++R  A
Sbjct: 142 HSANPFRELTERELDVLQEVARGLSNKEIATTLHISEETVKVHIRNLLRKLDVRSRVAA 200


>gi|148379355|ref|YP_001253896.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153934107|ref|YP_001383731.1| LuxR family DNA-binding response regulator [Clostridium botulinum A
           str. ATCC 19397]
 gi|153937750|ref|YP_001387280.1| LuxR family DNA-binding response regulator [Clostridium botulinum A
           str. Hall]
 gi|148288839|emb|CAL82923.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152930151|gb|ABS35651.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933664|gb|ABS39163.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. Hall]
 gi|322805695|emb|CBZ03260.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +N
Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213

Query: 244 NIV 246
           NIV
Sbjct: 214 NIV 216


>gi|153006507|ref|YP_001380832.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030080|gb|ABS27848.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
          Length = 541

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L  ++ G+T+  IA  L +S  T++ +I++I RK    +R+ A A+A
Sbjct: 481 LTPRELQVLRLVAAGRTNKAIAAELFLSERTIDRHISNIFRKLNVPSRAAATAHA 535


>gi|118618297|ref|YP_906629.1| putative regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118570407|gb|ABL05158.1| conserved hypothetical regulatory protein [Mycobacterium ulcerans
           Agy99]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT REVE L  ++ G+T+ +IA  L IS  TV +++  ++RK     R+ A +  VR
Sbjct: 347 LTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVR 403


>gi|40804409|gb|AAR91700.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|85374680|ref|YP_458742.1| two-component regulator [Erythrobacter litoralis HTCC2594]
 gi|84787763|gb|ABC63945.1| two-component regulator [Erythrobacter litoralis HTCC2594]
          Length = 198

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           H   D  LT RE E  + + EG ++ +IA+ LGIS  TV N++  I+ K     RS
Sbjct: 137 HQRTDNCLTAREREVASLVKEGLSNKQIAIELGISPATVKNHVHMILEKLNMPRRS 192


>gi|55821328|ref|YP_139770.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55823240|ref|YP_141681.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55737313|gb|AAV60955.1| response regulator (homolog to RR11 Spn) [Streptococcus
           thermophilus LMG 18311]
 gi|55739225|gb|AAV62866.1| response regulator (homolog to RR11 Spn) [Streptococcus
           thermophilus CNRZ1066]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  +++G T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A
Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTDAVRIA 193


>gi|37520342|ref|NP_923719.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211335|dbj|BAC88714.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 301

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++  T+ EIA  L IS  TV+++ A +M+K  T+  +G +  AV+  +
Sbjct: 228 LTKREQEILGLIAQEYTNSEIAKHLYISPRTVDSHRARLMQKLGTRNTAGLVRIAVQQGL 287

Query: 246 V 246
           +
Sbjct: 288 L 288


>gi|313158965|gb|EFR58342.1| transcriptional regulator, LuxR family [Alistipes sp. HGB5]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           L+ RE E L  IS GK S EIA++L IS +TVN +  +I+ K    T
Sbjct: 190 LSDREKEVLQLISAGKMSKEIAILLSISIHTVNRHRQNILSKLKADT 236


>gi|311895803|dbj|BAJ28211.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 209

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE + L  + +G  + EIA  L IS  TV  ++  I  K    TRSGA+A A
Sbjct: 147 QLTDREQDILDQLGQGLGNKEIARALFISEATVKTHLGRIYAKLGADTRSGAVAIA 202


>gi|225009965|ref|ZP_03700437.1| two component transcriptional regulator, LuxR family [Flavobacteria
           bacterium MS024-3C]
 gi|225005444|gb|EEG43394.1| two component transcriptional regulator, LuxR family [Flavobacteria
           bacterium MS024-3C]
          Length = 209

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL--FPKGRIILRDRLWEIGLLAAYQ 169
           +F +  E +   + +    C      ARI   L  L    +G+I L   L E       Q
Sbjct: 80  IFSSQSETVYALSAIRAGACGYLSKTARIDQILTALTQLKEGKIYLTHSLSE-------Q 132

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
               KS D       +L+ RE+E L  ++ GK + E+A  L I+  TV+ Y + +M+K
Sbjct: 133 LKKEKSGDKEKSAFRKLSSREIEVLKLLASGKKNKEVAGGLDINEKTVSTYKSRLMKK 190


>gi|52082354|ref|YP_081145.1| putative transcriptional regulator YdfI [Bacillus licheniformis
           ATCC 14580]
 gi|52787743|ref|YP_093572.1| YdfI [Bacillus licheniformis ATCC 14580]
 gi|319648225|ref|ZP_08002442.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2]
 gi|52005565|gb|AAU25507.1| putative transcriptional regulator YdfI [Bacillus licheniformis
           ATCC 14580]
 gi|52350245|gb|AAU42879.1| YdfI [Bacillus licheniformis ATCC 14580]
 gi|317389860|gb|EFV70670.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2]
          Length = 212

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT +EV  L  I++G  S  IA  LG+S  TV + + SI  K    +R+ A+  A++
Sbjct: 146 DTQLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQ 205

Query: 243 NNIV 246
             ++
Sbjct: 206 RGVL 209


>gi|16080459|ref|NP_391286.1| two-component response regulator YvfT [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311357|ref|ZP_03593204.1| hypothetical protein Bsubs1_18471 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315684|ref|ZP_03597489.1| hypothetical protein BsubsN3_18387 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320599|ref|ZP_03601893.1| hypothetical protein BsubsJ_18350 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324884|ref|ZP_03606178.1| hypothetical protein BsubsS_18506 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312958|ref|YP_004205245.1| two-component response regulator YvfT [Bacillus subtilis BSn5]
 gi|81814911|sp|O07019|YVFU_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yvfU
 gi|1945721|emb|CAB07991.1| hypothetical protein [Bacillus subtilis]
 gi|2635919|emb|CAB15411.1| two-component response regulator [YvfT] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320019232|gb|ADV94218.1| two-component response regulator (YvfT) [Bacillus subtilis BSn5]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   + GKT+ +I + L +S+ TV NYI+ I++K   K R+ A + A
Sbjct: 140 LTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLNAKNRTEAASIA 194


>gi|328913398|gb|AEB64994.1| Uncharacterized transcriptional regulatory protein yxjL [Bacillus
           amyloliquefaciens LL3]
          Length = 225

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWI 197
           RIR  +  +F  G  IL+D +     L   + ++F+  +  H   + + T RE+  ++ I
Sbjct: 120 RIRDAIKSVF-NGHSILQDTV-----LDKIKDSLFRPAEAAHQIDESQFTERELSIMSLI 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G ++ EI+  L IS  T  NYI+SI+ KT  + R+    Y +   +
Sbjct: 174 AKGFSNREISKQLFISEGTTANYISSILGKTGLEHRTQIAIYYITGKV 221


>gi|300782102|ref|YP_003762393.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791616|gb|ADJ41991.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 208

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  I +G ++ EIA  L ++  TV NY+ S++ K   + R+ A A+ VR  
Sbjct: 149 LTERERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAAWIVRRE 207


>gi|295134645|ref|YP_003585321.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294982660|gb|ADF53125.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 208

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + + RE+E L ++    T  EIA  + +S  T++ Y  ++  K   ++R G   YA++NN
Sbjct: 145 QFSEREIEFLQYVCTEMTYKEIAAKMSLSPKTIDGYRENLFTKLQIRSRVGLAVYAIKNN 204


>gi|257487581|ref|ZP_05641622.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331012605|gb|EGH92661.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 247

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   
Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQAVYKAINMG 245

Query: 245 IV 246
           +V
Sbjct: 246 MV 247


>gi|225076056|ref|ZP_03719255.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens
           NRL30031/H210]
 gi|241758839|ref|ZP_04756952.1| transcriptional regulatory protein DegU [Neisseria flavescens
           SK114]
 gi|224952616|gb|EEG33825.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens
           NRL30031/H210]
 gi|241321047|gb|EER57260.1| transcriptional regulatory protein DegU [Neisseria flavescens
           SK114]
          Length = 218

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YAV++ 
Sbjct: 152 QLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHK 211

Query: 245 I 245
           +
Sbjct: 212 V 212


>gi|145594766|ref|YP_001159063.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
 gi|145304103|gb|ABP54685.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
          Length = 231

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G+++ EIA  L +S  TV  ++ +++ K   + R  A+  A  + +
Sbjct: 167 LTGREREVLVQVARGRSNAEIAQELSVSETTVKTHVGNVLTKLRLRDRVQAVVLAYESGL 226

Query: 246 V 246
           +
Sbjct: 227 I 227


>gi|146299747|ref|YP_001194338.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146154165|gb|ABQ05019.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 213

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE E L  I+    + EIA    IS NTVN +  +++ K   K  +G + YAV N 
Sbjct: 151 ELSSREKEILVLIAHEYNTAEIAEKTFISLNTVNTHRRNLLSKLNAKNTAGLVKYAVENG 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|4416228|gb|AAD20272.1| regulator [Streptomyces arenae]
          Length = 202

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE + L+  SEG  + EIA  L ++  TV NY++S + K   + R  A+  A
Sbjct: 138 DHPLTERESDVLSLASEGAEASEIAAQLHLAVGTVRNYLSSAVTKLGARNRLDAVRIA 195


>gi|329941026|ref|ZP_08290306.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329300320|gb|EGG44218.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 227

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 163 GLLAAYQANMFKSYD----VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           GL+A + A      D    VH  +   LTGRE E L  ++ G ++DEIA  L +S  TV 
Sbjct: 135 GLIARFLAQGDADEDGRDRVHAERLAALTGREREVLVQVAGGHSNDEIAERLEVSPLTVK 194

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++   M K   + R+  +  A  + +V
Sbjct: 195 THVNRAMSKLGARDRAQLVFIAYESGLV 222


>gi|325961668|ref|YP_004239574.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467755|gb|ADX71440.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 416

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D+ L  RE+E L  ++ G+ +  IA  L IS NTV  ++ ++ RK    +R+ A+A A  
Sbjct: 353 DWNLGERELEVLQLLAAGQRNRSIAAKLHISENTVKFHLRNLYRKIGASSRTEAMALAHS 412

Query: 243 NNI 245
           N +
Sbjct: 413 NGL 415


>gi|319638279|ref|ZP_07993042.1| LuxR family Transcriptional regulator [Neisseria mucosa C102]
 gi|317400552|gb|EFV81210.1| LuxR family Transcriptional regulator [Neisseria mucosa C102]
          Length = 218

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YAV++ 
Sbjct: 152 QLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHK 211

Query: 245 I 245
           +
Sbjct: 212 V 212


>gi|326316964|ref|YP_004234636.1| LuxR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373800|gb|ADX46069.1| transcriptional regulator, LuxR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 181

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 26/48 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELTGRE E    + +G TS EI   L IS  TV  Y A +MRK    T
Sbjct: 123 ELTGREREVAARLLDGMTSKEIGRALDISHRTVEIYRARLMRKYGAST 170


>gi|228919844|ref|ZP_04083201.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839798|gb|EEM85082.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 207

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +K  +V+  K  E  LT +E+  L  I+ G  + EIA  +GI+  TV  Y+ +I  K   
Sbjct: 130 YKRKEVYADKVEENNLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGV 189

Query: 231 KTRSGAIAYAVRNNIV 246
            +RS A+A ++   ++
Sbjct: 190 NSRSEAVAVSIERKLI 205


>gi|261380927|ref|ZP_05985500.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava
           NJ9703]
 gi|284796180|gb|EFC51527.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava
           NJ9703]
          Length = 218

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YAV++ 
Sbjct: 152 QLTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHK 211

Query: 245 I 245
           +
Sbjct: 212 V 212


>gi|225387858|ref|ZP_03757622.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme
           DSM 15981]
 gi|225046041|gb|EEG56287.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme
           DSM 15981]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE + +  +++G  + EIA  L ++  TV N ++ ++ K   K R+    +AV+N
Sbjct: 148 FNLTDRERDIVRLVAQGMDNREIARTLYLAEGTVRNNLSRVLEKLELKDRTQLAVFAVKN 207

Query: 244 NI 245
           N+
Sbjct: 208 NL 209


>gi|94984662|ref|YP_604026.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554943|gb|ABF44857.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 228

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F ++      +  L+ RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    +
Sbjct: 150 FSTHQTPTPPEDALSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGS 209

Query: 233 RSGAIAYAVRNN 244
           R+ A+ Y ++  
Sbjct: 210 RTEAVLYGIKRG 221


>gi|330954288|gb|EGH54548.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae Cit 7]
          Length = 190

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ + L  ++ GKT+ EIA  LGIS  TV  +++S+++     TR+ A A
Sbjct: 130 LTARQKQVLGLVAAGKTNKEIAKDLGISPFTVRIHVSSLLKVLGVSTRAAAAA 182


>gi|326792258|ref|YP_004310079.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM
           5427]
 gi|326543022|gb|ADZ84881.1| two component transcriptional regulator, LuxR family [Clostridium
           lentocellum DSM 5427]
          Length = 207

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVR 242
           LT REVE    I+EG ++ EI   L IS  TV N+I+ I+ KT  + R+  A+ Y  R
Sbjct: 150 LTEREVEVAAAIAEGLSNKEIGKKLFISDGTVRNHISVILSKTGLEHRTQIAVRYLTR 207


>gi|281491392|ref|YP_003353372.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375126|gb|ADA64642.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 209

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  ++ G ++ EIA  L IS  TV  ++++I  K     R+ A  YA++++
Sbjct: 148 DLSKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHH 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|239820082|ref|YP_002947267.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
 gi|239804935|gb|ACS22001.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 208

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  +++G  + +I   LGI   TV  ++ +I+RK    TR  AI  A R  ++
Sbjct: 144 TARELEVLRLMAQGLANKDIGRRLGIGEGTVKAHVKAILRKLRKPTRVAAIGEAFRCGLL 203


>gi|168180051|ref|ZP_02614715.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           NCTC 2916]
 gi|182669120|gb|EDT81096.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           NCTC 2916]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +N
Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213

Query: 244 NIV 246
           NIV
Sbjct: 214 NIV 216


>gi|153940488|ref|YP_001390741.1| LuxR family DNA-binding response regulator [Clostridium botulinum F
           str. Langeland]
 gi|152936384|gb|ABS41882.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           F str. Langeland]
 gi|295318814|gb|ADF99191.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           F str. 230613]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +N
Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213

Query: 244 NIV 246
           NIV
Sbjct: 214 NIV 216


>gi|148652475|ref|YP_001279568.1| two component LuxR family transcriptional regulator [Psychrobacter
           sp. PRwf-1]
 gi|148571559|gb|ABQ93618.1| two component transcriptional regulator, LuxR family [Psychrobacter
           sp. PRwf-1]
          Length = 219

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE++ +  I++G ++  I   LGIS +TV  ++  I+ KT  +TR     +AV N
Sbjct: 159 LTSRELQVVKMIAKGHSNKMIGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAVNN 216


>gi|146299551|ref|YP_001194142.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146153969|gb|ABQ04823.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 209

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIR-IGLMLL-FPKGRIILRDRLWEIGLLAAYQ 169
           +F  L E +  P  +            ++  +GL ++   +G+II+ + + +   L A Q
Sbjct: 80  IFSDLAEQMYAPNAIKAGVSGYVHKTEKLETLGLSIIKVHEGKIIINETVRKNMALIAKQ 139

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +   + Y        +L+ RE+E L ++S+GK ++EI+ IL ++  T++ Y
Sbjct: 140 SKSERLYR-------KLSNREIEVLRYLSDGKKNNEISKILSLNEKTISTY 183


>gi|294664209|ref|ZP_06729588.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292606021|gb|EFF49293.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|289645094|ref|ZP_06477121.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289505091|gb|EFD26163.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  ++ GKT+ +IA  L ++  TV +++  I+RK     R+ A+A
Sbjct: 349 LTPRECEVLRSLASGKTNAQIASSLFVTEGTVKSHVKHILRKLGAANRTDAVA 401


>gi|282864347|ref|ZP_06273403.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560834|gb|EFB66380.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 223

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLRLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|238027737|ref|YP_002911968.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237876931|gb|ACR29264.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae
           BGR1]
          Length = 181

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRVLEISSRTVDIYRARLMRKYGT 168


>gi|229028798|ref|ZP_04184901.1| Sensory transduction protein ydfI [Bacillus cereus AH1271]
 gi|228732508|gb|EEL83387.1| Sensory transduction protein ydfI [Bacillus cereus AH1271]
          Length = 207

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 173 FKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +K  +V+  K  E  LT +E+  L  I+ G  + EIA  +GI+  TV  Y+ +I  K   
Sbjct: 130 YKRKEVYADKVEENNLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGV 189

Query: 231 KTRSGAIAYAVRNNIV 246
            +RS A+A ++   ++
Sbjct: 190 NSRSEAVAVSIERKLI 205


>gi|78048691|ref|YP_364866.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926244|ref|ZP_08187599.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78037121|emb|CAJ24866.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543331|gb|EGD14759.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|54027465|ref|YP_121707.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018973|dbj|BAD60343.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 222

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ +IA  LG+S  TV N++ + +RK     R     YA+   +
Sbjct: 162 LTERETEVLRMVAKGLSAKQIAARLGLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|15640423|ref|NP_230050.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587593|ref|ZP_01677358.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121727264|ref|ZP_01680423.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147675776|ref|YP_001218664.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153818257|ref|ZP_01970924.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153822263|ref|ZP_01974930.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|227080607|ref|YP_002809158.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|229507036|ref|ZP_04396542.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286]
 gi|229508809|ref|ZP_04398301.1| hypothetical protein VCE_000215 [Vibrio cholerae B33]
 gi|229519797|ref|ZP_04409240.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9]
 gi|229530241|ref|ZP_04419629.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)]
 gi|229606322|ref|YP_002876970.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236]
 gi|254850628|ref|ZP_05239978.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255743782|ref|ZP_05417739.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101]
 gi|262153605|ref|ZP_06028733.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE
           91/1]
 gi|262167639|ref|ZP_06035343.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27]
 gi|262191516|ref|ZP_06049700.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT
           5369-93]
 gi|297580534|ref|ZP_06942460.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298501071|ref|ZP_07010872.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9654817|gb|AAF93569.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548166|gb|EAX58238.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121630383|gb|EAX62778.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|126511216|gb|EAZ73810.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126520219|gb|EAZ77442.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146317659|gb|ABQ22198.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|227008495|gb|ACP04707.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227012251|gb|ACP08461.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|229332014|gb|EEN97502.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)]
 gi|229344486|gb|EEO09461.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9]
 gi|229354212|gb|EEO19143.1| hypothetical protein VCE_000215 [Vibrio cholerae B33]
 gi|229355781|gb|EEO20701.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286]
 gi|229368977|gb|ACQ59400.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236]
 gi|254846333|gb|EET24747.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255738531|gb|EET93919.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101]
 gi|262023975|gb|EEY42672.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27]
 gi|262030632|gb|EEY49268.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE
           91/1]
 gi|262032614|gb|EEY51168.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT
           5369-93]
 gi|297534950|gb|EFH73785.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297540319|gb|EFH76379.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y    F+S+ V    D  LT RE++ L  +  G ++ +IA  L IS  TV +++  I
Sbjct: 136 LLHYYRYAFQSHQVQATVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193

Query: 225 MRKTATKTRSGAIAYAVRN 243
            +K   K R  AIA+  +N
Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212


>gi|325661231|ref|ZP_08149858.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472738|gb|EGC75949.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 208

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 32/51 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ++LT RE   +  +++G+++ EIA  L +   TV NY++SI+ K   + R+
Sbjct: 147 YQLTSREFSIIELVADGRSNREIAEALYLGEGTVRNYLSSILEKLELRDRT 197


>gi|310640465|ref|YP_003945223.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245415|gb|ADO54982.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 589

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + LT RE+E L  ++EG     IA  + +S  TV NYI++I  K   ++R  AI  A
Sbjct: 525 YGLTERELEILHCLTEGHRYKAIASKVHLSEGTVRNYISTIYSKMQVQSRDEAIEKA 581


>gi|307324110|ref|ZP_07603319.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890559|gb|EFN21536.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G+T++E+AV L ++ +TV  ++ ++ RK A + R    A+A  + +
Sbjct: 172 LTQREREVVRRVARGRTNEEVAVDLHVTLSTVKTHLGNVQRKLAARNRVEIAAWAWEHGM 231

Query: 246 V 246
           V
Sbjct: 232 V 232


>gi|296536416|ref|ZP_06898516.1| LuxR family DNA-binding response regulator [Roseomonas cervicalis
           ATCC 49957]
 gi|296263266|gb|EFH09791.1| LuxR family DNA-binding response regulator [Roseomonas cervicalis
           ATCC 49957]
          Length = 308

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           LT RE E L WI  GK + +IA IL +S  TVN ++  I  K   +
Sbjct: 247 LTAREAEVLLWIGRGKANRDIAEILVMSPRTVNKHLEGIFAKLGVE 292


>gi|293491180|gb|ADE45144.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|294626147|ref|ZP_06704754.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665211|ref|ZP_06730510.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599596|gb|EFF43726.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605034|gb|EFF48386.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 235

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L+ +  G T+  +A  LGIS  TV  ++  I++K   K R+ A  YAV++ +
Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233

Query: 246 V 246
            
Sbjct: 234 A 234


>gi|289422732|ref|ZP_06424572.1| response regulator [Peptostreptococcus anaerobius 653-L]
 gi|289156911|gb|EFD05536.1| response regulator [Peptostreptococcus anaerobius 653-L]
          Length = 199

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E E L  +++G ++ EIA I  +S  TV NYI+ I++K   + R+ A+  A   N
Sbjct: 139 LTSQEEELLRKVAQGLSNKEIARISYLSDGTVRNYISIILQKLDAENRTDAVRIAQEKN 197


>gi|257054297|ref|YP_003132129.1| two component transcriptional regulator, LuxR family
           [Saccharomonospora viridis DSM 43017]
 gi|256584169|gb|ACU95302.1| two component transcriptional regulator, LuxR family
           [Saccharomonospora viridis DSM 43017]
          Length = 208

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W    +LT RE E L  +++G T+ +IA  L ++  TV NY+++ M K   + R+ A   
Sbjct: 142 WDHSDQLTDRERELLRQVADGATNRDIARRLHLAEGTVRNYLSAAMAKLGARNRTEAAKA 201

Query: 240 A 240
           A
Sbjct: 202 A 202


>gi|160889954|ref|ZP_02070957.1| hypothetical protein BACUNI_02388 [Bacteroides uniformis ATCC 8492]
 gi|270294634|ref|ZP_06200836.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481391|ref|ZP_07940459.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|156860342|gb|EDO53773.1| hypothetical protein BACUNI_02388 [Bacteroides uniformis ATCC 8492]
 gi|270276101|gb|EFA21961.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902487|gb|EFV24373.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 203

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ++     +L+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ SG  
Sbjct: 130 INTAAGHDLSAREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLT 189

Query: 238 AYAVRNNIV 246
            YAV +  V
Sbjct: 190 IYAVMHGYV 198


>gi|330005638|ref|ZP_08305316.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
 gi|328536204|gb|EGF62585.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
          Length = 841

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D+H     EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+
Sbjct: 773 SPDIH----GELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRT 828

Query: 235 GAIAYAVRNNIV 246
            A++ A+   ++
Sbjct: 829 QAMSRALEMKLL 840


>gi|319793052|ref|YP_004154692.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595515|gb|ADU36581.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS]
          Length = 188

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 27/48 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELT RE E    + +G TS EI   LGIS  TV  + A +MRK A  T
Sbjct: 130 ELTPREREVAAQVMQGLTSKEIGKALGISHRTVELHRARLMRKYAAAT 177


>gi|293491176|gb|ADE45142.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|150024808|ref|YP_001295634.1| two-component system response regulatory protein [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771349|emb|CAL42818.1| Probable two-component system response regulatory protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 222

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E L  I + ++   I+ +L IS NTV  +  ++M+K   K+  G + +AV++++
Sbjct: 160 ITARELEILNLIGQERSGKYISNLLNISVNTVETHRKNLMKKLNVKSSIGLVIFAVKHDL 219

Query: 246 V 246
           +
Sbjct: 220 I 220


>gi|126737738|ref|ZP_01753468.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. SK209-2-6]
 gi|126721131|gb|EBA17835.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. SK209-2-6]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT+ +IA+++G++  TV  ++       + +T + A+  A   N
Sbjct: 186 LTKRQKEALQWVGDGKTTQDIALLMGLTAATVEKHLRLARESLSVETTAQAVLKATLQN 244


>gi|152996834|ref|YP_001341669.1| response regulator receiver protein [Marinomonas sp. MWYL1]
 gi|150837758|gb|ABR71734.1| response regulator receiver protein [Marinomonas sp. MWYL1]
          Length = 211

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 35/49 (71%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +L+ RE++  +++S+G ++ +IA+ +GI+  TV  ++ SI +KT TK R
Sbjct: 149 DLSERELKVSSFVSKGLSNKQIALEMGITERTVKAHLTSIFKKTNTKDR 197


>gi|83648198|ref|YP_436633.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636241|gb|ABC32208.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 201

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           GLLA  +  +      H  +    + R +E L ++++G ++ EIA  LGIS  TV  Y++
Sbjct: 117 GLLAILRGELVTVTQCH-DQLPSFSPRHLETLEYLTQGLSNKEIAKNLGISDITVRQYVS 175

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+     + R+ A+  A +  I+
Sbjct: 176 DIIDHLGVENRTQAVMAAKKRGII 199


>gi|297201227|ref|ZP_06918624.1| two-component system regulator [Streptomyces sviceus ATCC 29083]
 gi|197712910|gb|EDY56944.1| two-component system regulator [Streptomyces sviceus ATCC 29083]
          Length = 227

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + 
Sbjct: 161 ELTERETEVLALIAQGLSNAEIAGRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 220

Query: 245 IV 246
           +V
Sbjct: 221 LV 222


>gi|120611788|ref|YP_971466.1| LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120590252|gb|ABM33692.1| transcriptional regulator, LuxR family [Acidovorax citrulli
           AAC00-1]
          Length = 181

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 26/48 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELTGRE E    + +G TS EI   L IS  TV  Y A +MRK    T
Sbjct: 123 ELTGREREVAARLLDGMTSKEIGRALDISHRTVEIYRARLMRKYGAST 170


>gi|56681815|gb|AAW21508.1| nitrate/nitrite regulatory protein [Methylophaga
           aminisulfidivorans]
          Length = 226

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +T RE E L +I++G  +  IA  LGIS  TV  Y+ S++RK    +R    A+A RN
Sbjct: 159 MTERERETLFYIAKGLNNKLIARELGISDGTVKVYVKSLLRKVNLHSRLELAAWAHRN 216


>gi|78046491|ref|YP_362666.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926045|ref|ZP_08187409.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78034921|emb|CAJ22566.1| putative transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325543571|gb|EGD14990.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 235

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L+ +  G T+  +A  LGIS  TV  ++  I++K   K R+ A  YAV++ +
Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233

Query: 246 V 246
            
Sbjct: 234 A 234


>gi|326439852|ref|ZP_08214586.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 202

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT REVE L   ++G  + EIAV L +S  TV NY+ +I+ K   + R  AI  A
Sbjct: 141 LTPREVEVLRMAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVA 195


>gi|312197458|ref|YP_004017519.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228794|gb|ADP81649.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 206

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L  RE E L  ++EG T+ +IA  + +S  TV NY++SI+ K    +R+ A  +A R
Sbjct: 147 LGTREREILHLVAEGLTNRQIASRIHLSEKTVKNYVSSILVKLELTSRTQAAVFAAR 203


>gi|311064838|ref|YP_003971564.1| two-component system response regulator [Bifidobacterium bifidum
           PRL2010]
 gi|313140925|ref|ZP_07803118.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|310867158|gb|ADP36527.1| Two-component system response regulator [Bifidobacterium bifidum
           PRL2010]
 gi|313133435|gb|EFR51052.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 238

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +L+A+Q           G+D EL   +GRE E +  I+ G T  E+A  L IS  TV  +
Sbjct: 153 VLSAFQGAPMDGAGGARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETH 212

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +++++RK     R+    +A    IV
Sbjct: 213 MSNVLRKLQLSNRTELTRWAADRRIV 238


>gi|294811306|ref|ZP_06769949.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC
           27064]
 gi|294323905|gb|EFG05548.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC
           27064]
          Length = 231

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT REVE L   ++G  + EIAV L +S  TV NY+ +I+ K   + R  AI  A
Sbjct: 170 LTPREVEVLRMAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVA 224


>gi|316933442|ref|YP_004108424.1| autoinducer-binding domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315601156|gb|ADU43691.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 239

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L WI+EGKT  EI+ ILG+S + V+     +  K     R   I+ A+R  +
Sbjct: 178 LTIREADVLHWIAEGKTDWEISQILGVSEHLVDKVARQLKDKFGAVNRVQMISCAMRLGV 237

Query: 246 V 246
           +
Sbjct: 238 I 238


>gi|282879611|ref|ZP_06288342.1| hemerythrin HHE cation binding domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306559|gb|EFA98588.1| hemerythrin HHE cation binding domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 318

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L IS NTV  +  +I RK    + SG   YA+ NN+
Sbjct: 251 LSEREKEVIVSLVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPSGLTIYAIVNNL 310

Query: 246 V 246
           +
Sbjct: 311 I 311


>gi|260426159|ref|ZP_05780138.1| autoinducer-binding transcriptional regulator, LuxR family
           [Citreicella sp. SE45]
 gi|260420651|gb|EEX13902.1| autoinducer-binding transcriptional regulator, LuxR family
           [Citreicella sp. SE45]
          Length = 255

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT  +IA I+G+++ T+  ++         +T + A+A A   N
Sbjct: 190 LTKRQREALEWVGDGKTMQDIAAIMGLTQATIEKHLRLAREALNVETTAQAVAKAAFQN 248


>gi|170782478|ref|YP_001710811.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157047|emb|CAQ02220.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 212

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E LT ++EG T+ EIA  L +S +TV  ++  ++ K   + R  A+  A
Sbjct: 148 LTARELEVLTALAEGLTNQEIAGRLFLSESTVKTHVGRVLAKLEVRDRVQAVILA 202


>gi|114764692|ref|ZP_01443877.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542892|gb|EAU45913.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G   +LT RE   L  +++GK++ E+A+ L IS  TV  +  +I RK    + +G  
Sbjct: 139 VMSGGREQLTNREQTVLLQLAQGKSNKEVALALDISVRTVETHRKNIKRKLGISSTAGLT 198

Query: 238 AYAVRNNIV 246
            YA+ + ++
Sbjct: 199 RYALEHGVL 207


>gi|256376928|ref|YP_003100588.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921231|gb|ACU36742.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +++G+++ EIAV L +S  TV  Y++ ++ K   + R  A+  A R  +
Sbjct: 154 LSPRELEVLRLVADGRSNSEIAVELVLSPETVKTYVSRLLAKLDLRDRVQAVVPAHRTGL 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|269125551|ref|YP_003298921.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310509|gb|ACY96883.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 215

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ +  ++ G+T++EIA  L +S +TV  ++ ++ RK A + R    A+A  + I
Sbjct: 154 LTERELQVVRLVARGRTNEEIAGELFVSLSTVKTHLGNVQRKLAARNRVEIAAWAWESGI 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|226323937|ref|ZP_03799455.1| hypothetical protein COPCOM_01714 [Coprococcus comes ATCC 27758]
 gi|225207486|gb|EEG89840.1| hypothetical protein COPCOM_01714 [Coprococcus comes ATCC 27758]
          Length = 213

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 178 VHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           V  GK    +L+ +E+E L  + EGKT+ EIA  L ++ ++V  YI  ++ KT    R+ 
Sbjct: 135 VQLGKALSCDLSDQEMETLRLLCEGKTNAEIAAKLHVAESSVRTYINRMLEKTGYTNRNR 194

Query: 236 AIAYAVRNNIV 246
            +  AV   +V
Sbjct: 195 LMVAAVSKRLV 205


>gi|212715195|ref|ZP_03323323.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661876|gb|EEB22451.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM
           16992]
          Length = 218

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + ++  +EG    EIA  L IS  T+  +I SI+RK   KT   A+A  VR+N
Sbjct: 158 LTVREEQIISLCAEGMLDREIAERLRISEATIRKHIQSILRKLNCKTSRQAVALWVRSN 216


>gi|229520043|ref|ZP_04409472.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80]
 gi|229525089|ref|ZP_04414494.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis
           VL426]
 gi|229338670|gb|EEO03687.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis
           VL426]
 gi|229342992|gb|EEO07981.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80]
 gi|327483254|gb|AEA77661.1| Transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y    F+S+ V    D  LT RE++ L  +  G ++ +IA  L IS  TV +++  I
Sbjct: 136 LLHYYRYAFQSHQVQATVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193

Query: 225 MRKTATKTRSGAIAYAVRN 243
            +K   K R  AIA+  +N
Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212


>gi|29898943|gb|AAP12214.1| Two-component response regulator yocG [Bacillus cereus ATCC 14579]
          Length = 141

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++
Sbjct: 93  WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVL 138


>gi|91975316|ref|YP_567975.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91681772|gb|ABE38074.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 224

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|330985566|gb|EGH83669.1| LuxR transcriptional regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 247

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   
Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245

Query: 245 IV 246
           +V
Sbjct: 246 MV 247


>gi|293393463|ref|ZP_06637774.1| transcriptional activator protein LasR [Serratia odorifera DSM
           4582]
 gi|291424064|gb|EFE97282.1| transcriptional activator protein LasR [Serratia odorifera DSM
           4582]
          Length = 237

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E   W + GKT+ EI+ IL  S   VN +  +I RK    +R  AI  A+
Sbjct: 175 LSPREIEVCKWFTIGKTTWEISRILNCSEANVNFHFKNIRRKFNVSSRGAAIIKAI 230


>gi|229065659|ref|ZP_04200888.1| Response regulator [Bacillus cereus AH603]
 gi|228715632|gb|EEL67427.1| Response regulator [Bacillus cereus AH603]
          Length = 597

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  +S G     IA  L +S  T+ NY +++  K +   R  AI  A + 
Sbjct: 535 YGLTKREMEILEHLSGGLRYKSIAAKLFLSEGTIRNYCSTLYSKLSVNNREEAITRARKE 594

Query: 244 NIV 246
           NIV
Sbjct: 595 NIV 597


>gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 231

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++
Sbjct: 168 IELTPREQSVLDLVAEGLMNKEIASRLNTSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 227

Query: 244 NI 245
            +
Sbjct: 228 GL 229


>gi|254291301|ref|ZP_04962095.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|150422757|gb|EDN14710.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y    F+S+ V    D  LT RE++ L  +  G ++ +IA  L IS  TV +++  I
Sbjct: 136 LLHYYRYAFQSHQVQATVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193

Query: 225 MRKTATKTRSGAIAYAVRN 243
            +K   K R  AIA+  +N
Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212


>gi|45934814|gb|AAS79478.1| putative response regulator [Streptomyces bikiniensis]
          Length = 240

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +SEG  +  IA     S  TV N +  I  +   + R+ A+ YA+RN +
Sbjct: 180 LTSREAEMLRLVSEGLDTAAIARKTSYSERTVKNVLHEITTRLQLRNRAHAVGYALRNGL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|333028557|ref|ZP_08456621.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332748409|gb|EGJ78850.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 215

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 168 YQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           + A + +  D H G+       LTGRE E L  ++ G ++ EIA  L +   TV  ++++
Sbjct: 124 FPAAVRRLADQHGGRAPAPFPGLTGREGEVLRLMARGLSNAEIAARLVVGAETVKTHVSA 183

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K   + R+ A+  A  +  V
Sbjct: 184 VLAKLGARDRTQAVVLAYDSGFV 206


>gi|312963163|ref|ZP_07777648.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311282674|gb|EFQ61270.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 240

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 27/42 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE+E L W + GKT+ EIA IL +S  TV  +  S MRK
Sbjct: 176 LTPRELEVLRWSALGKTAGEIAKILCLSERTVGFHNCSSMRK 217


>gi|256830064|ref|YP_003158792.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579240|gb|ACU90376.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 222

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K+ D  +G    L+ RE + +  ++EG T +EIA  L +SR TV N+  +IM K   K+ 
Sbjct: 149 KTVDASYGS---LSLREQQVMRLLAEGLTPEEIAAKLFVSRKTVLNHRYAIMTKLGIKSP 205

Query: 234 SGAIAYAVRNNIV 246
              + +A R  ++
Sbjct: 206 VAFVRHAARLGLI 218


>gi|213691407|ref|YP_002321993.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522868|gb|ACJ51615.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 220

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E ++  + G TS EI   LGI  +TV  YI  +  K   K R+ A+
Sbjct: 160 LTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQAV 211


>gi|325924567|ref|ZP_08186081.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325544945|gb|EGD16285.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           REV  L  ++ G ++ EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+
Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAI 205


>gi|322373180|ref|ZP_08047716.1| DNA-binding response regulator [Streptococcus sp. C150]
 gi|321278222|gb|EFX55291.1| DNA-binding response regulator [Streptococcus sp. C150]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  +++G T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A
Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIA 193


>gi|308178463|ref|YP_003917869.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307745926|emb|CBT76898.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 221

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ GK + EIA +LG+S  TV  ++++++ K   + R   + +A R  +
Sbjct: 160 LTERERQVLGELATGKNNQEIAAVLGLSEATVKTHLSNLLAKLHLRDRVQGVLFAHRAGL 219

Query: 246 V 246
           +
Sbjct: 220 I 220


>gi|283782494|ref|YP_003373249.1| two component LuxR family transcriptional regulator [Pirellula
           staleyi DSM 6068]
 gi|283440947|gb|ADB19389.1| two component transcriptional regulator, LuxR family [Pirellula
           staleyi DSM 6068]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + ++  LT REV+ L  ++ G ++ EI   L IS  TV  ++ +I+RK     R+ A  +
Sbjct: 144 YDEEIPLTNREVQVLRHVALGLSNREIGRSLDISIETVKEHVQNILRKLEAGDRTEAAVW 203

Query: 240 AVRNNIV 246
           AV+  +V
Sbjct: 204 AVKKGLV 210


>gi|312197193|ref|YP_004017254.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228529|gb|ADP81384.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 278

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  ++EG ++ E A  L +S  TV  Y+ SI  K     R+ A+  A R+
Sbjct: 215 YALTQRELEVLGLVAEGLSNAEAAQRLVVSPETVKAYLRSIRSKLGVSNRTAAVTVARRS 274

Query: 244 NIV 246
            ++
Sbjct: 275 GLL 277


>gi|269793732|ref|YP_003313187.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269095917|gb|ACZ20353.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 204

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE + L   ++G   DEIA  + +S  TV NY+++ + K     R  A A A R
Sbjct: 141 DSPLTAREADVLALAADGSPVDEIAQRVSLSAGTVRNYLSTAVMKLGVSNRHEAAATARR 200

Query: 243 NN 244
           + 
Sbjct: 201 HG 202


>gi|4218542|emb|CAA09631.1| putative two-component response regulator [Streptomyces
           violaceoruber]
          Length = 202

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L   +EG  + EIA  L +S  TV NY+ S++ K   + R  A+  A
Sbjct: 141 LTEREMEVLRLTAEGDEAPEIAARLHLSTGTVRNYLTSVVTKLNARNRVDAVRIA 195


>gi|21241668|ref|NP_641250.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107032|gb|AAM35786.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 235

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L+ +  G T+  +A  LGIS  TV  ++  I++K   K R+ A  YAV++ +
Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233

Query: 246 V 246
            
Sbjct: 234 A 234


>gi|81428980|ref|YP_395980.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610622|emb|CAI55673.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 199

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YA+++ 
Sbjct: 137 DLTNREREVLGLVAKGRSNQEIADELFITLKTVKTHVSNILAKLQVDDRTQAAIYAIKHQ 196

Query: 245 I 245
           +
Sbjct: 197 L 197


>gi|37675846|ref|NP_936242.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|37200385|dbj|BAC96212.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
          Length = 376

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT  E E  + +  G   DEIAV+   + NT+   I + + KTAT+ ++  +A  +R+
Sbjct: 313 FSLTLAEAEVTSLLCSGSLVDEIAVLRDATSNTIRQQIKACLAKTATRNQAELVAKVIRS 372


>gi|21222055|ref|NP_627834.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256786856|ref|ZP_05525287.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289770751|ref|ZP_06530129.1| two-component system regulator [Streptomyces lividans TK24]
 gi|4753864|emb|CAB42027.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
 gi|289700950|gb|EFD68379.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 228

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + 
Sbjct: 162 ELTERETEVLALIAQGLSNAEIAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|124268421|ref|YP_001022425.1| response regulator [Methylibium petroleiphilum PM1]
 gi|124261196|gb|ABM96190.1| response regulator [Methylibium petroleiphilum PM1]
          Length = 219

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E L  +++G T  EI V L +SR+T+ +Y+  I RK    +R+
Sbjct: 157 LTERENEVLLRVAKGFTLPEIGVQLNLSRHTIADYVKQIYRKLNVSSRA 205


>gi|326776481|ref|ZP_08235746.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656814|gb|EGE41660.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
          Length = 249

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  +SEG  + EIA     S  TV N +  +  +   + R+ A+ YA+R+ +
Sbjct: 189 LTAREAEMIRLVSEGCDTAEIAQKTSYSERTVKNVLHEVATRLELRNRAHAVGYAMRHGL 248

Query: 246 V 246
           +
Sbjct: 249 I 249


>gi|188580322|ref|YP_001923767.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343820|gb|ACB79232.1| transcriptional regulator, LuxR family [Methylobacterium populi
           BJ001]
          Length = 486

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G +  LT RE + L  I  G   D IA  L +SRNTV N+ A++ RK     R+ A+ + 
Sbjct: 415 GANPTLTLRERQILNLICAGLDDDAIARRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWG 474

Query: 241 VRNN 244
             N 
Sbjct: 475 RENG 478


>gi|326334296|ref|ZP_08200514.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325947905|gb|EGD40027.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 211

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +++ REVE L  +++G  + E+A  L +S  TV ++++ I  K    TR+GA+A A+   
Sbjct: 148 KVSPREVEILRLLAKGLGNKEMARELLVSEATVKSHLSHIYTKLGVDTRAGAVATAIERR 207

Query: 245 IV 246
           I+
Sbjct: 208 IL 209


>gi|320323453|gb|EFW79538.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 240

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+  +  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQTVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|319937001|ref|ZP_08011411.1| LuxR family DNA-binding response regulator [Coprobacillus sp. 29_1]
 gi|319807937|gb|EFW04516.1| LuxR family DNA-binding response regulator [Coprobacillus sp. 29_1]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT--ATKTRSGAIAYAVR 242
           E T +E+E L  + EG    EIA  L +S NTV  +++ I+++T  A KTR  AIA   +
Sbjct: 142 EFTSKEIEVLRLVCEGLEYGEIAEKLNVSVNTVKTHVSHILQRTGYANKTRL-AIAVTNK 200

Query: 243 NNIV 246
           N I+
Sbjct: 201 NFII 204


>gi|269793167|ref|YP_003318071.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100802|gb|ACZ19789.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 211

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G   EL+ RE E L   S G  S EIA  L IS  TV  ++ASI  K   + ++ A+
Sbjct: 133 VSSGPTEELSQREREVLLLASRGLASKEIASRLVISDRTVQAHLASIYGKLGARNKTEAM 192

Query: 238 AYAVRNNIV 246
              +++ I+
Sbjct: 193 LLGLKHGIL 201


>gi|254386360|ref|ZP_05001666.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345211|gb|EDX26177.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 177

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDF------ELTGREVECLTWISEGKTSDEIAVILGISRN 215
           IG +AA +    +S D      F       L+ RE+  L   +EG +  EIA  L ++  
Sbjct: 91  IGRVAAGE----RSIDATLASAFMEADPMPLSPRELSVLARAAEGDSIAEIARALHLASG 146

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NY+A++ RKT  + R  AI  + R   V
Sbjct: 147 TVRNYMAAVTRKTGARNRIDAIRISRRAGWV 177


>gi|134291597|ref|YP_001115366.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134134786|gb|ABO59111.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 212

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  ++ G    EIA  LGI+  TV+ Y A +++K   +T +  I YA+ + I
Sbjct: 149 LTARENAVLEGLACGDGISEIASRLGINAKTVSTYKARLLKKLELRTEAALIRYAIEHQI 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|118917992|dbj|BAF40420.1| PsyR [Pseudomonas syringae pv. tabaci]
          Length = 247

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   
Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245

Query: 245 IV 246
           +V
Sbjct: 246 MV 247


>gi|111027158|ref|YP_709136.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110825697|gb|ABH00978.1| probable transcriptional regulator, LuxR family [Rhodococcus jostii
           RHA1]
          Length = 427

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  ++ GK +  IA  LGIS +T+  ++AS+++K     R  A A  ++  I
Sbjct: 359 LNPRELEVLAHLAVGKRNKAIATELGISESTIKFHVASVLKKLDVANRGEAGAIGIQAGI 418

Query: 246 V 246
           +
Sbjct: 419 M 419


>gi|326328660|ref|ZP_08195000.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325953621|gb|EGD45621.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+ G ++ EIA  L ++  TV  +++ I+ K   + R+ A+ +A  + 
Sbjct: 155 QLTEREREVLENIARGSSNSEIAAELFLAEQTVKTHVSRILGKLGLRDRAQAVVFAYESG 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|311900005|dbj|BAJ32413.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 223

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +
Sbjct: 158 LTEREVEVLRLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLQLRDRVQAAVYAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|239980308|ref|ZP_04702832.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291452173|ref|ZP_06591563.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355122|gb|EFE82024.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 229

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G D  LTGRE E +  +++G ++ EIA  L +S  TV  ++  I+ K   + R   + 
Sbjct: 152 HAGLD-RLTGREREVMVLVAQGLSNGEIAAHLVLSEATVKTHVGRILTKLGLRDRVQVVV 210

Query: 239 YAVRNNIV 246
            A    +V
Sbjct: 211 LAYETGLV 218


>gi|239934234|ref|ZP_04691187.1| two component LuxR family transcriptional regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291442679|ref|ZP_06582069.1| two component transcriptional regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345574|gb|EFE72530.1| two component transcriptional regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 230

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  I+EG ++ EIA  + I+  TV  Y++ I+ K   + R  A+  A R  +
Sbjct: 166 LAPRELEVLQLIAEGLSNAEIAAAMFITPETVKTYVSRILAKLDLRDRVQAVVLAYRVGL 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|134290974|ref|YP_001114743.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134134163|gb|ABO58488.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 212

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  ++ G    EIA  LGI+  TV+ Y A +++K   +T +  I YA+ + I
Sbjct: 149 LTAREKAVLEGLACGDGISEIASRLGINAKTVSTYKARLLKKLELRTEAALIRYALEHQI 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|114328487|ref|YP_745644.1| LuxR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316661|gb|ABI62721.1| transcriptional regulator, LuxR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LTGRE   LT I + +++ EIA  LGI + TV NY   + RK    +    +A
Sbjct: 321 LTGRERSLLTLILQRRSTGEIAQSLGIGKGTVKNYKLRLYRKANVTSERALVA 373


>gi|163845622|ref|YP_001633666.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222523324|ref|YP_002567794.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163666911|gb|ABY33277.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447203|gb|ACM51469.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 213

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G T+ EIA  L +S  TV  Y    M K   ++R+  + YA+ +N+
Sbjct: 150 LSEREREVLLLVARGYTAAEIAEQLSLSPKTVETYRTRGMEKLGLRSRAALVQYALNHNL 209

Query: 246 V 246
           +
Sbjct: 210 L 210


>gi|325110042|ref|YP_004271110.1| LuxR family transcriptional regulator [Planctomyces brasiliensis
           DSM 5305]
 gi|324970310|gb|ADY61088.1| transcriptional regulator, LuxR family [Planctomyces brasiliensis
           DSM 5305]
          Length = 248

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E LT+++EGK+  E+A ++ +S+ +++++   IM +     R      A+R  +
Sbjct: 186 LTPRQLEVLTYLAEGKSVKEVAQVMHLSQKSIDSHKYRIMNRLHVHDRVHLSRIAIREGL 245

Query: 246 V 246
           +
Sbjct: 246 I 246


>gi|297160246|gb|ADI09958.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 190

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K   LT RE+E L   S+G+ S +IA  L +S  TV NY+ S++ K   + R  AI  A
Sbjct: 126 KPQPLTPRELEVLLLASQGEGSAQIAARLYLSVGTVRNYLTSVVTKLNARNRVDAIRIA 184


>gi|213968144|ref|ZP_03396289.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383850|ref|ZP_07232268.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058473|ref|ZP_07250014.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato K40]
 gi|302133415|ref|ZP_07259405.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213927124|gb|EEB60674.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331016272|gb|EGH96328.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 87

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R  
Sbjct: 23  QLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82

Query: 245 IV 246
           ++
Sbjct: 83  VI 84


>gi|187933177|ref|YP_001885914.1| sigma-70, region 4 family [Clostridium botulinum B str. Eklund 17B]
 gi|187721330|gb|ACD22551.1| sigma-70, region 4 family [Clostridium botulinum B str. Eklund 17B]
          Length = 243

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E +  I+ G T+ EI + L IS  TV  ++ +I+RK   K R   + +   N+
Sbjct: 181 KLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRLEVVIFCKSNS 240

Query: 245 I 245
           I
Sbjct: 241 I 241


>gi|290956373|ref|YP_003487555.1| response regulator [Streptomyces scabiei 87.22]
 gi|260645899|emb|CBG68990.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 299

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G+   LT REV+ L  ++ G T+   A  LG+   TV  Y+ S MRK    TR  A+  
Sbjct: 232 GGERVALTAREVDVLACVAMGATNAVAAQRLGLRPETVKAYLRSAMRKLGAHTRLEAVVA 291

Query: 240 AVRNNIV 246
           A R  ++
Sbjct: 292 ARRAGLL 298


>gi|255035822|ref|YP_003086443.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254948578|gb|ACT93278.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 220

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +T RE + L  ++EG +S +IA    IS NTV N  ASIM+K   +  +  I+ A++
Sbjct: 164 ITPREQQILKCLTEGMSSKDIAEKFDISSNTVANQRASIMKKANVRNTAELISLAMK 220


>gi|126653823|ref|ZP_01725686.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905]
 gi|126589660|gb|EAZ83797.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905]
          Length = 229

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  I+ G ++ E+A  + +S  T+N Y+ S ++K   K R+ AI+   +  +
Sbjct: 169 LSKRELEVMRQIALGDSTKEMADFMNLSELTINQYVKSAIKKLQAKNRTHAISILYQEGV 228

Query: 246 V 246
           +
Sbjct: 229 I 229


>gi|84684966|ref|ZP_01012866.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667301|gb|EAQ13771.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 253

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 33/54 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L+ R++E L W+SEGK++ ++A I+ +S  T+  ++     K    T + AIA
Sbjct: 158 KLSKRQLEVLEWVSEGKSNQDVATIMDVSVPTIEKHLRLAREKLGVDTTAQAIA 211


>gi|308176214|ref|YP_003915620.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743677|emb|CBT74649.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 224

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE E L  ++EG ++ EIA  L I   TV  +++SI+ K   + R  AI +A +
Sbjct: 152 DADLTPREREVLAALAEGSSNAEIAEQLFIEIGTVKTHVSSIILKLGVRDRVQAIVWAYQ 211

Query: 243 NN 244
           ++
Sbjct: 212 HH 213


>gi|260467229|ref|ZP_05813405.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029004|gb|EEW30304.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++EG  +  IA  L IS +T   ++A+I+ K     R+ AIA A+R  +
Sbjct: 148 LSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIAIAMRQGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|302557405|ref|ZP_07309747.1| response regulator [Streptomyces griseoflavus Tu4000]
 gi|302475023|gb|EFL38116.1| response regulator [Streptomyces griseoflavus Tu4000]
          Length = 231

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++EG  + EIA  L  S  TV N +  +  +   + R+ A+AYA+R   
Sbjct: 171 LTAREADVLRLVAEGLDTTEIAAKLAYSERTVKNVLHGLTTRLHLRNRAHAVAYALREGF 230

Query: 246 V 246
           +
Sbjct: 231 I 231


>gi|297543943|ref|YP_003676245.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841718|gb|ADH60234.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 257

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 14/145 (9%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           +P E +C +F      I  P  +DN+      D++ I   +            + +  I 
Sbjct: 124 KPEEHYCDIFKQWY-CIATPFHIDNQIVGY-LDISIIEHNMA----------DEMMGFID 171

Query: 164 LLAAYQANMFK-SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LL    AN +K   D+   +D E LT +++E +   ++G T   I++ LG+   TV  + 
Sbjct: 172 LLVYKIANEYKREMDLESQEDLEKLTDKQIEIIKKCAKGYTELAISMELGLKPATVKYHK 231

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             I++K   K    AIA A+R N++
Sbjct: 232 KEIIKKLRVKNFQQAIAKAIRLNLI 256


>gi|257057812|ref|YP_003135644.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587684|gb|ACU98817.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 250

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE + L  I+EG  +  +A  L +S  TV  ++ SI+RK   + R+ A++ A R
Sbjct: 171 DMPLSRREYQVLQLIAEGLENAAVADKLYLSVETVRTHVKSILRKLGARDRTHAVSKAFR 230

Query: 243 NNIV 246
           + ++
Sbjct: 231 SGLL 234


>gi|229189937|ref|ZP_04316947.1| Response regulator [Bacillus cereus ATCC 10876]
 gi|228593611|gb|EEK51420.1| Response regulator [Bacillus cereus ATCC 10876]
          Length = 212

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +  +  D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVI-----LDKIKSNLMESKEEEFKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|222081090|ref|YP_002540453.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter
           K84]
 gi|221725769|gb|ACM28858.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter
           K84]
          Length = 500

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +L+ RE E L  I  G++  E++  L +S+NT+ N++AS+  K     R+ A+ +A
Sbjct: 426 LDLSDREKEILALICRGQSDAEMSETLHLSKNTIRNHVASLYIKIGVNRRAAAVIWA 482


>gi|18699286|gb|AAL78509.1|AF456804_1 probable transcriptional activator TraR [Sinorhizobium meliloti]
 gi|38374154|gb|AAR19282.1| TraR [Sinorhizobium meliloti]
          Length = 234

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ CL W + GKT+ E A++ GI+  TV +Y+     K   ++    +A A    +
Sbjct: 174 LSPREMLCLVWATRGKTAPETAMLTGINPRTVQHYLDKARAKLGAESVPQLVAIAKDRGL 233

Query: 246 V 246
           V
Sbjct: 234 V 234


>gi|115523303|ref|YP_780214.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517250|gb|ABJ05234.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisA53]
          Length = 237

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +CL  +  G+T  +IA  L +S + V+ Y+ +  RK    T   AIA AVR ++
Sbjct: 177 LSSRERQCLNGLVRGRTPGQIAGELDLSGSAVHGYLRTARRKLDCATVEQAIAKAVRLDL 236

Query: 246 V 246
           +
Sbjct: 237 L 237


>gi|316932396|ref|YP_004107378.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315600110|gb|ADU42645.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 225

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|223934791|ref|ZP_03626711.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896746|gb|EEF63187.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 211

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EL+ RE E L  ++EG    +IA  LG+S +TV NYI  I  K   ++ S A+A   R+
Sbjct: 153 ELSPREREVLEGLAEGCAYKQIADKLGVSIHTVRNYIRRIYEKLHVRSSSQAVARYYRH 211


>gi|115351402|ref|YP_773241.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|172060441|ref|YP_001808093.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115281390|gb|ABI86907.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
 gi|171992958|gb|ACB63877.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 181

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLATGKTSKQIGRMLDISSRTVDIYRARLMRKYGT 168


>gi|37223205|gb|AAQ90198.1| LuxR [Aliivibrio fischeri]
          Length = 222

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 23/32 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           LT RE ECL W SEGK++ +I+ ILG S  TV
Sbjct: 183 LTKREKECLAWASEGKSTWDISKILGCSERTV 214


>gi|58580891|ref|YP_199907.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425485|gb|AAW74522.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 277

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 215 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 266


>gi|13472199|ref|NP_103766.1| response regulatory protein [Mesorhizobium loti MAFF303099]
 gi|14022944|dbj|BAB49552.1| respose regulatory protein [Mesorhizobium loti MAFF303099]
          Length = 211

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++EG  +  IA  L IS +T   ++A+I+ K     R+ AIA A+R  +
Sbjct: 149 LSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIAIAMRQGL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|289649319|ref|ZP_06480662.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 247

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   
Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245

Query: 245 IV 246
           +V
Sbjct: 246 MV 247


>gi|269929142|ref|YP_003321463.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788499|gb|ACZ40641.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 212

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ LT ++ G  + EIA  L I+  TV  +  +I RK     R+ A++ A++  
Sbjct: 149 ELTARELDVLTLMARGLRNKEIAYELSITERTVKFHANAIYRKLDVSGRTEAVSKAIQRG 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|239820766|ref|YP_002947951.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
 gi|239805619|gb|ACS22685.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 212

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L  R+ + L WI EGKT+ EIA    +   TV NY+++I+     ++R+
Sbjct: 157 LAPRQAQVLQWILEGKTNKEIAEAASLGEGTVKNYVSTILLLFGVRSRA 205


>gi|78045671|ref|YP_361846.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034101|emb|CAJ21746.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           REV  L  ++ G ++ EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+
Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAI 205


>gi|56418740|ref|YP_146058.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56378582|dbj|BAD74490.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 221

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            T RE++ +  I++G ++ EIA  L +S  TV NYI SI+ KT  + R+    Y
Sbjct: 161 FTERELDIMALIAKGLSNKEIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214


>gi|332663404|ref|YP_004446192.1| LuxR family ATP-dependent transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332218|gb|AEE49319.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 147

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + + L+ RE E LT I++G ++ EIA  L +S NT+  + +++  K   K R+ A+  A
Sbjct: 83  EKYNLSKREYEVLTLIAQGYSNQEIAETLFVSLNTIKTHSSNVFLKLDVKRRTQAVQKA 141


>gi|326385167|ref|ZP_08206835.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196132|gb|EGD53338.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 212

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G++  LT RE E L  I +G ++ +I    G+S N+V  YI +  R+    TR+ A+ + 
Sbjct: 140 GREEGLTQREAEILALIVQGLSNADIVEQTGLSINSVKTYIRTCYRRIGVNTRAQAVLWG 199

Query: 241 VRNNIV 246
           V +  V
Sbjct: 200 VNHGFV 205


>gi|325923449|ref|ZP_08185108.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546071|gb|EGD17266.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 194

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + LT RE E    +S G ++ EIA  L I   TV N++ S++RKT  +TR  A+
Sbjct: 131 YRLTPREREVADLLSRGLSNKEIARDLRIELATVKNHVHSVLRKTDARTRLQAV 184


>gi|320457478|dbj|BAJ68099.1| putative two-component response regulator [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 132

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E ++  + G TS EI   LGI  +TV  YI  +  K   K R+ A+
Sbjct: 72  LTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQAV 123


>gi|298243906|ref|ZP_06967713.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297556960|gb|EFH90824.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 266

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + G D  LT +E+E + +++ G ++ EIA  L  S  TV NY++ I +K   + R+    
Sbjct: 186 NQGTDL-LTEKELEIIRYVAAGLSNKEIAERLSYSEKTVKNYLSIIFQKLHLRDRTQVAI 244

Query: 239 YAVRNNIV 246
           +A+R  ++
Sbjct: 245 FALRQGLL 252


>gi|294625489|ref|ZP_06704118.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665263|ref|ZP_06730559.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600210|gb|EFF44318.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604978|gb|EFF48333.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           REV  L  ++ G ++ EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+
Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAI 205


>gi|282865307|ref|ZP_06274359.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282559780|gb|EFB65330.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 381

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 33/64 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S    WG   EL+ RE E +  I+ G T+ +IA    IS+ TV N+I  I  K    +R 
Sbjct: 304 SVPAAWGLVDELSEREREVMGLIASGMTNQQIAATCFISQKTVKNHINRIFAKLNAGSRG 363

Query: 235 GAIA 238
            AIA
Sbjct: 364 EAIA 367


>gi|260433411|ref|ZP_05787382.1| DNA-binding response regulator, LuxR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417239|gb|EEX10498.1| DNA-binding response regulator, LuxR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 147 LTGREQTILLELAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|261418524|ref|YP_003252206.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765338|ref|YP_004130839.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261374981|gb|ACX77724.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317110204|gb|ADU92696.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 221

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            T RE++ +  I++G ++ EIA  L +S  TV NYI SI+ KT  + R+    Y
Sbjct: 161 FTERELDIMALIAKGLSNKEIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214


>gi|194016391|ref|ZP_03055005.1| putative LuxR family transcriptional regulator [Bacillus pumilus
           ATCC 7061]
 gi|194011864|gb|EDW21432.1| putative LuxR family transcriptional regulator [Bacillus pumilus
           ATCC 7061]
          Length = 335

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 9/112 (8%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWG 181
            G+D    S+T    R+  GL L     R+       E  ++   +A   ++ D+  +  
Sbjct: 221 GGIDQTAASMT----RLPTGLFLSLQAFRLAQAAGQEEAVMIHIKRA---QTNDILPYAA 273

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K ++LT RE+  L  + +G+++ EIA  L IS +TV++++ ++++KT   +R
Sbjct: 274 KTYKLTEREMNVLDCLLKGQSTKEIASTLFISTHTVHDHVKAMLQKTNLSSR 325


>gi|182679885|ref|YP_001834031.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635768|gb|ACB96542.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 255

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 12/162 (7%)

Query: 86  LVRCMALSEKDKYYNVLQRPTE-LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           LV  ++ +E  +Y  +  R  E L     H L    T P  +D  + +  F +A+ +  +
Sbjct: 91  LVNGLSWNEIGQYVTLNSRQIETLESARRHGLNTGFTIPLRLDG-FENAMFSMAKRKANV 149

Query: 145 MLLFPKGRIILRDRLWE--IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                   I   +RL    +G +   +A+   + D        L+ R+V+C+  +++G +
Sbjct: 150 --------ITSEERLLACLVGSVTFARAHALVTADAGIFTPVHLSPRQVDCVALLAKGYS 201

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             EIA  LGIS  TV  YI    R    K R      AVR+ 
Sbjct: 202 DFEIARQLGISPETVREYITKARRSYGVKRRFQLAILAVRDG 243


>gi|157694336|ref|YP_001488798.1| LuxR family transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157683094|gb|ABV64238.1| possible LuxR family transcriptional regulator [Bacillus pumilus
           SAFR-032]
          Length = 335

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 174 KSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +++D+  +  K ++LT RE+  L  + +G+++ EIA  L IS +TV++++ ++++KT   
Sbjct: 264 QTHDILPYAAKTYKLTEREMNVLDCLLKGQSTKEIASTLFISTHTVHDHVKAMLQKTNLS 323

Query: 232 TR 233
           +R
Sbjct: 324 SR 325


>gi|149914675|ref|ZP_01903205.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b]
 gi|149811468|gb|EDM71303.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b]
          Length = 224

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L  + +G T+ +I+  LG+S NTV  Y+ +I +K    +R  AIA  V  N
Sbjct: 165 LSRREHEILALLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGAAIAKYVAGN 223


>gi|68536238|ref|YP_250943.1| two-component system response regulator TcsR3 [Corynebacterium
           jeikeium K411]
 gi|260578938|ref|ZP_05846841.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
 gi|68263837|emb|CAI37325.1| two-component system response regulator TcsR3 [Corynebacterium
           jeikeium K411]
 gi|258602912|gb|EEW16186.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
          Length = 216

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G L    AN F+S          LT RE E L   S+GK++  IA  L ++  TV +++
Sbjct: 141 MGKLRGRLANPFES----------LTNREQEVLVLASQGKSNRAIAKDLVLTEATVKSHM 190

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           A +  K   K R+ A+A A    I+
Sbjct: 191 AHVFSKLNVKNRTAAVAVARERGII 215


>gi|312863667|ref|ZP_07723905.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
 gi|311101203|gb|EFQ59408.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  +++G T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A
Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIA 193


>gi|237799435|ref|ZP_04587896.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022291|gb|EGI02348.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 220

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L  I  GK++ E+A  LG+S  TV  + + IM++      +G + + VR  I
Sbjct: 156 LTARQLEILRLIVRGKSTREMASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRERI 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|194291238|ref|YP_002007145.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193225073|emb|CAQ71084.1| putative response regulator, LuxR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 228

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + L  I  G  + EIA  LG+S  TV  +  ++ RK   + R+G + YAV
Sbjct: 164 LTPRERDILRGIGRGLANKEIAAQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAV 219


>gi|148272451|ref|YP_001222012.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830381|emb|CAN01316.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 232

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E LT ++EG T+ EIA  L +S +TV  ++  ++ K   + R  A+  A
Sbjct: 168 LTARELEVLTALAEGLTNQEIAGRLYLSESTVKTHVGRVLAKLEVRDRVQAVILA 222


>gi|148273924|ref|YP_001223485.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831854|emb|CAN02824.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 206

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 34/57 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             L+ RE+E L  +++G ++ ++A  L I+  TV +++  +  K    +R+GA+A A
Sbjct: 143 VSLSSREIEVLRLVADGASNTDVAARLHITDATVKSHLVHVFSKLGVSSRTGAVAAA 199


>gi|134103787|ref|YP_001109448.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005755|ref|ZP_06563728.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916410|emb|CAM06523.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 224

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++G T+ +IA  L IS  TV N++ S +RK     R     YA+ + 
Sbjct: 155 QLTDRETEVLRQVAKGLTARQIANKLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHG 214

Query: 245 I 245
           +
Sbjct: 215 L 215


>gi|118722505|gb|ABL09961.1| regulator [Streptomyces echinatus]
          Length = 202

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L W SEG +  ++A    +S  TV N+++SI+ K   ++R  A+  A
Sbjct: 141 LTPRETEILRWASEGGSVRDVADAARLSPGTVRNHLSSIVTKLGARSRLDAVRIA 195


>gi|88807322|ref|ZP_01122834.1| response regulator like protein [Synechococcus sp. WH 7805]
 gi|88788536|gb|EAR19691.1| response regulator like protein [Synechococcus sp. WH 7805]
          Length = 234

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+ RE   L  +  G T+ EI   L I+  T   ++ SIMRK   K R+ A   A
Sbjct: 168 GQAHALSDRERMVLQQLCNGLTNREIGEALTIAETTARGHVQSIMRKLNVKDRTAAAVEA 227

Query: 241 VRNN 244
           +R +
Sbjct: 228 IRRH 231


>gi|329939330|ref|ZP_08288666.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301559|gb|EGG45453.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 224

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  YA  + +
Sbjct: 159 LTERETEVLALIAQGLSNAEIAERLCVAEQTVKTHVGRILVKLGLRDRTQAAVYAFESGV 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|294812452|ref|ZP_06771095.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441089|ref|ZP_08215823.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325051|gb|EFG06694.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 236

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G ++ EIA  L ++  TV  +I  I+ K   + R+ A+ +A  + 
Sbjct: 170 ELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAVIFAYESG 229

Query: 245 IV 246
           +V
Sbjct: 230 LV 231


>gi|228477748|ref|ZP_04062377.1| DNA-binding response regulator [Streptococcus salivarius SK126]
 gi|228250637|gb|EEK09848.1| DNA-binding response regulator [Streptococcus salivarius SK126]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  +++G T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A
Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIA 193


>gi|224540370|ref|ZP_03680909.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518021|gb|EEF87126.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 219

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  KD  LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  
Sbjct: 145 HTLKDDLLTPAERSVLKEIALGKTTKEIAAEKNLSFHTVNSHRKNIFRKLGVNNVHEATK 204

Query: 239 YAVRNNIV 246
           YA++  IV
Sbjct: 205 YAMKAGIV 212


>gi|220916020|ref|YP_002491324.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953874|gb|ACL64258.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 208

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A + ++     G    LT RE E L  ++EG  +  IA  LGIS +T   ++ +I+ K  
Sbjct: 132 ATLLRAPAAEAGGP--LTPREREVLALVAEGLGNKAIAGRLGISEHTAKFHVNAILGKLG 189

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R+ AI  A R  +V
Sbjct: 190 AGSRAEAIVRAARLGLV 206


>gi|322516517|ref|ZP_08069435.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322124986|gb|EFX96400.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  +++G T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A
Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLNAGNRTEAVRIA 193


>gi|317055507|ref|YP_004103974.1| LuxR family two component transcriptional regulator [Ruminococcus
           albus 7]
 gi|315447776|gb|ADU21340.1| two component transcriptional regulator, LuxR family [Ruminococcus
           albus 7]
          Length = 209

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 34/51 (66%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + ++ +E E L  ++EGK++ EI+  L +S  TV NYI+S++ K + + R+
Sbjct: 146 YGISEKEKEILELVAEGKSNKEISAELFLSEGTVRNYISSLLDKLSLRDRT 196


>gi|290958644|ref|YP_003489826.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648170|emb|CBG71278.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L+ I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + 
Sbjct: 158 DLTERETEVLSLIAQGLSNAEIAQSLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|229014836|ref|ZP_04171934.1| Response regulator [Bacillus mycoides DSM 2048]
 gi|228746456|gb|EEL96361.1| Response regulator [Bacillus mycoides DSM 2048]
          Length = 290

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  +S G     IA  L +S  T+ NY +++  K +   R  AI  A + 
Sbjct: 228 YGLTKREMEILEHLSGGLRYKSIAAKLFLSEGTIRNYCSTLYSKLSVNNREEAIKRARKE 287

Query: 244 NIV 246
           NIV
Sbjct: 288 NIV 290


>gi|229102538|ref|ZP_04233243.1| Two-component protein Kinase [Bacillus cereus Rock3-28]
 gi|228680860|gb|EEL35032.1| Two-component protein Kinase [Bacillus cereus Rock3-28]
          Length = 592

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G   + IA  L +S  TV NY +S   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|254464109|ref|ZP_05077520.1| two component response regulator [Rhodobacterales bacterium Y4I]
 gi|206685017|gb|EDZ45499.1| two component response regulator [Rhodobacterales bacterium Y4I]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 147 LTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|218296777|ref|ZP_03497483.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
 gi|218242866|gb|EED09400.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
          Length = 207

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L  +++G +  E+A  LGIS  TV  Y    M K    +RS  + YA R  
Sbjct: 147 LSPREEEVLRLLAQGLSHKEVAEKLGISEKTVATYRERGMEKLGLASRSELLRYAARKG 205


>gi|86751663|ref|YP_488159.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86574691|gb|ABD09248.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 224

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|328883448|emb|CCA56687.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 220

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K A + R+ A  +A    
Sbjct: 155 ELTERETEVLVLIAQGLSNAEIADHLVVAESTIKTHVSRILVKLALRDRTQAAVFAYEAG 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|298250158|ref|ZP_06973962.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548162|gb|EFH82029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 1003

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+ RE E L  ++ G ++ EIA  L I  NTV  ++ +I  K  T  R+ AIA A
Sbjct: 942 QLSQREQEVLHLLASGHSNAEIAETLIIGLNTVKTHLKNIYGKLGTHNRTQAIAQA 997


>gi|297195101|ref|ZP_06912499.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152625|gb|EFH31883.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G T+ EIA  +G+   T   ++A+++ K   + R+ A+  A  +  
Sbjct: 155 LTGREAEVLRLMATGLTNAEIAGRMGVGPATTKTHVAAVLGKIGARDRTQAVIAAYESGF 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|297564113|ref|YP_003683086.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848562|gb|ADH70580.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 223

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G +  LT RE E L   S+G T   IA  L ++  TV NY+++ + KT    R  AI  A
Sbjct: 158 GGESPLTDRETEVLRAASDGATVARIAAALHLTEGTVRNYLSNAIGKTGADNRMSAIRTA 217


>gi|254510855|ref|ZP_05122922.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacteraceae bacterium KLH11]
 gi|221534566|gb|EEE37554.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacteraceae bacterium KLH11]
          Length = 250

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT+ +IA+++G++  TV  ++       + +T + A+  A   N
Sbjct: 185 LTKRQREALQWVGDGKTTQDIALLMGLTAATVEKHLRLAREALSVETTAQAVLKAALQN 243


>gi|71065169|ref|YP_263896.1| nitrate/nitrite response regulator [Psychrobacter arcticus 273-4]
 gi|71038154|gb|AAZ18462.1| nitrate/nitrite response regulator, possibly NarL [Psychrobacter
           arcticus 273-4]
          Length = 219

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LTGRE++ +  I+EG ++  IA  L I+ +TV  ++  I+ KT  +TR  A  + V +
Sbjct: 159 LTGRELQVIQMIAEGLSNKMIANKLDIAESTVKVHVKHILNKTGLRTRVDAAVWTVNH 216


>gi|299134073|ref|ZP_07027266.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
 gi|298590820|gb|EFI51022.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
          Length = 225

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           ++ L A    +M K  D    +   LT ++V  L  +SEG  + +IA  LG+S  T+  +
Sbjct: 135 DVDLTAGVDPDMAKLRD----RLITLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAH 190

Query: 221 IASIMRKTATKTRSGAIAYAVR 242
           +++I++K   ++R+ A+  A +
Sbjct: 191 VSAILQKLGVESRTQAVIVAAK 212


>gi|288921041|ref|ZP_06415332.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288347559|gb|EFC81845.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 1061

 Score = 40.4 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE +    ++EG T+ +IA  L IS  T  N++  I+ K   + RS   A+ VRN+
Sbjct: 992  LSPRERQVARLVAEGLTNRQIAARLVISERTAQNHVQHILTKLGFRARSQIAAWVVRNS 1050


>gi|288921805|ref|ZP_06416022.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288346829|gb|EFC81141.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 694

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTGRE + L    +G T  +IA  L +S  TV NY+++++ KT T+ R  A+  A
Sbjct: 634 LTGRERDVLVAARDGATVADIARRLFLSEGTVRNYLSAVIAKTGTRNRMEALRVA 688


>gi|288941613|ref|YP_003443853.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288896985|gb|ADC62821.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 209

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E LT  + G T+ +IA  LGIS  TV N+ A +M K      +G +A   R +
Sbjct: 142 QLTPREHEVLTLTTRGLTNKDIARQLGISPRTVENHRARMMEKMG----AGNLAELCRMS 197

Query: 245 IV 246
           +V
Sbjct: 198 VV 199


>gi|229096445|ref|ZP_04227417.1| Two-component protein Kinase [Bacillus cereus Rock3-29]
 gi|228687007|gb|EEL40913.1| Two-component protein Kinase [Bacillus cereus Rock3-29]
          Length = 592

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G   + IA  L +S  TV NY +S   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|229115351|ref|ZP_04244759.1| Two-component protein Kinase [Bacillus cereus Rock1-3]
 gi|228668071|gb|EEL23505.1| Two-component protein Kinase [Bacillus cereus Rock1-3]
          Length = 592

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G   + IA  L +S  TV NY +S   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|226948658|ref|YP_002803749.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
 gi|226842846|gb|ACO85512.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +N
Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213

Query: 244 NIV 246
           NIV
Sbjct: 214 NIV 216


>gi|254504396|ref|ZP_05116547.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222440467|gb|EEE47146.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 185

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +LT RE E +  +S+GKTS EIA  LG+S  TV +  A +++K   K
Sbjct: 121 QLTKREREVVLLLSQGKTSKEIARDLGLSPRTVEDVRARLLKKFEVK 167


>gi|212640294|ref|YP_002316814.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561774|gb|ACJ34829.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 199

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 38/63 (60%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +     LT  E++ L  +++ +TS +I+  L IS+ T+  +++SI  K    +R+GA+A 
Sbjct: 132 YSTKHGLTNIEIDILQMLADDQTSVQISERLKISKRTMERHLSSIFEKLGVLSRTGAVAE 191

Query: 240 AVR 242
           A+R
Sbjct: 192 ALR 194


>gi|156740233|ref|YP_001430362.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156231561|gb|ABU56344.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 227

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ELT RE+E L  I+EG  + EIA  L IS NT   ++++I+ K     R
Sbjct: 153 ELTSRELEILQLIAEGLGNREIAARLDISYNTAMKHVSNILAKLKVSNR 201


>gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 220

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE E L  +  G  + EIA  L  S   V  Y++ ++ KT T +R+  + +A+ 
Sbjct: 150 DLDLTPREQEVLLLVYAGLMNKEIAGRLERSTRNVEKYVSRLLAKTGTSSRTELVRFALE 209

Query: 243 NNIV 246
           + +V
Sbjct: 210 HGLV 213


>gi|39933929|ref|NP_946205.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39647776|emb|CAE26296.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 225

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|295837969|ref|ZP_06824902.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|295826775|gb|EFG65041.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 224

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G   ELT RE E L  ++ G ++ EIA  L ++ +TV  +++ I+ K   + R+ A  +
Sbjct: 155 GGAYGELTERETEVLVHVACGLSNQEIAAKLYVAESTVKTHVSRILVKLGLRDRTQAAVF 214

Query: 240 AVRNNIV 246
           A  N +V
Sbjct: 215 AYENRLV 221


>gi|221369141|ref|YP_002520237.1| Two-component response regulator [Rhodobacter sphaeroides KD131]
 gi|221162193|gb|ACM03164.1| Two-component response regulator [Rhodobacter sphaeroides KD131]
          Length = 220

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE + L  ++EG ++ E+A+ L +   TV +Y+ +I++K   + R+ A   A R+
Sbjct: 158 QLTAREEDILRLVAEGCSNKEVALALDLQEKTVKHYMTAILQKLQVRNRTEAALMAQRH 216


>gi|197344641|gb|ACH69671.1| LuxR family transcriptional regulator [uncultured proteobacterium]
          Length = 277

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE +CL   ++GK+    + ILG+S  TV+N++ +  R+    TR  A+ +A+
Sbjct: 182 LSRRERQCLELAAQGKSDWVSSRILGLSERTVHNHVENAKRRLQVATRMQAVMHAL 237


>gi|167039015|ref|YP_001662000.1| regulatory protein LuxR [Thermoanaerobacter sp. X514]
 gi|300913396|ref|ZP_07130713.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp.
           X561]
 gi|307723589|ref|YP_003903340.1| LuxR family transcriptional regulator [Thermoanaerobacter sp. X513]
 gi|166853255|gb|ABY91664.1| regulatory protein, LuxR [Thermoanaerobacter sp. X514]
 gi|300890081|gb|EFK85226.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp.
           X561]
 gi|307580650|gb|ADN54049.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp.
           X513]
          Length = 257

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 14/145 (9%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           +P E +C +F      I  P  +DN+      D++ I   +            + +  I 
Sbjct: 124 KPEEHYCDIFKQWY-CIATPFHIDNQIVGY-LDISIIEHNMA----------DEMMGFID 171

Query: 164 LLAAYQANMFK-SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LL    AN +K   D+   +D E LT +++E +   ++G T   I++ LG+  +TV  + 
Sbjct: 172 LLVYKIANEYKREMDLESQEDLEKLTDKQIEIIKKCAKGYTELAISMELGLKPSTVKYHK 231

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             I++K   K    AIA A++ N++
Sbjct: 232 KEIIKKLRVKNFQQAIAKAIKLNLI 256


>gi|113869645|ref|YP_728134.1| response regulator [Ralstonia eutropha H16]
 gi|113528421|emb|CAJ94766.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 224

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + L  I  G  + EIA  LG+S  TV  +  ++ RK   + R+G + YAV
Sbjct: 160 LTPRERDILRGIGRGLANKEIAAQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAV 215


>gi|328765792|gb|EGF75911.1| hypothetical protein BATDEDRAFT_93225 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 152

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E +  IS G+T+ EIA  +GIS  TV  Y+   ++K     R+  +A   R
Sbjct: 91  LSNREFEVMNKISYGETTKEIASSMGISELTVKQYVKLALKKLNAANRAHGVAELFR 147


>gi|325926758|ref|ZP_08188066.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542839|gb|EGD14294.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           REV  L  ++ G ++ EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+
Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAI 205


>gi|322421400|ref|YP_004200623.1| LuxR family two component transcriptional regulator [Geobacter sp.
           M18]
 gi|320127787|gb|ADW15347.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M18]
          Length = 216

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I++G  + EIA   G+S  TV N   SIM+K    + +    YAVR  +
Sbjct: 153 LSAREREILQLIADGSNAKEIAFAFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212


>gi|229815028|ref|ZP_04445365.1| hypothetical protein COLINT_02069 [Collinsella intestinalis DSM
           13280]
 gi|229809258|gb|EEP45023.1| hypothetical protein COLINT_02069 [Collinsella intestinalis DSM
           13280]
          Length = 275

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ELT RE E +  ++EG  + EI+    IS  TV N I+S+++KT  K R+
Sbjct: 214 ELTEREYEVVRLVAEGLDNHEISAAAFISEGTVRNRISSVLQKTGHKNRT 263


>gi|166711196|ref|ZP_02242403.1| transcriptional regulator AhyR/AsaR family protein [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|150377494|ref|YP_001314089.1| autoinducer-binding domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150032041|gb|ABR64156.1| Autoinducer-binding domain protein [Sinorhizobium medicae WSM419]
          Length = 320

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE  CL W  +GK   E A I GI   TV +Y+ +  RK   ++    +A A  + +
Sbjct: 260 LSPREAMCLMWAMKGKNGPETAKITGIKPRTVQHYLDNARRKLGAQSVPHLVAIARDHGL 319

Query: 246 V 246
           V
Sbjct: 320 V 320


>gi|120404927|ref|YP_954756.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957745|gb|ABM14750.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
          Length = 399

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT REVE L  ++ G+T+ +IA  L IS  TV +++  ++RK     R+ A +  VR
Sbjct: 334 LTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVR 390


>gi|116628047|ref|YP_820666.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101324|gb|ABJ66470.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus
           thermophilus LMD-9]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  +++G T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A
Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIA 193


>gi|291540325|emb|CBL13436.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis XB6B4]
          Length = 261

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            H   +FEL+ RE E L  +  G ++ +IA  +GIS +TV  ++  I  K    TR+
Sbjct: 191 THLAAEFELSEREKEALLCMDGGMSNAQIAENMGISLSTVKKHVYHIFEKVGVDTRA 247


>gi|289664500|ref|ZP_06486081.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 267

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 205 LTRRERECLQYSAKGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEAV 256


>gi|260221745|emb|CBA30616.1| hypothetical protein Csp_C24440 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 235

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           H G +  L+ RE +    ++ GKT  EI   LG++ NTV+ Y   I+ KT TK
Sbjct: 166 HQGAE-ALSHREHQVFRLLTAGKTVGEIGAQLGLASNTVSTYRQRILEKTGTK 217


>gi|66045285|ref|YP_235126.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63255992|gb|AAY37088.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 87

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R  
Sbjct: 23  QLTVKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82

Query: 245 IV 246
           ++
Sbjct: 83  VI 84


>gi|15077445|gb|AAK83172.1|AF333038_14 putative two-component regulator [Streptomyces viridochromogenes]
          Length = 206

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR--SGAIAYA 240
           L+ RE++    +S G ++ EIA +LG++  TV  ++A I+ K   ++R  +G +A+A
Sbjct: 127 LSDRELQVFLLLSHGYSNREIAALLGVTERTVKAHMAQILAKLGVESRLQAGLVAFA 183


>gi|223940662|ref|ZP_03632503.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223890674|gb|EEF57194.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 241

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 166 AAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A+   N+  S +   GK     L+ RE + +  I+ GK+  EIA  L +S  T++ Y   
Sbjct: 158 ASLAENLATSLNTPMGKAPHEILSDREYQVMRLIALGKSVKEIAFDLSLSVKTISTYRTR 217

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           IM K   KT +  I YAV   +V
Sbjct: 218 IMEKMKFKTNADIIRYAVHERLV 240


>gi|329939589|ref|ZP_08288890.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301159|gb|EGG45054.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 204

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K   + R+ A+  A
Sbjct: 144 LTDREREVLRAAADGATNAELATALHLSQGTVRNYLSTAIQKLTARNRTEAVRIA 198


>gi|260222153|emb|CBA31434.1| hypothetical protein Csp_F37510 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 222

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A++F    V    + +LT  E   L  + EG TS EIA+ L IS  TV  +  ++  K  
Sbjct: 139 ASLFVDDSVTEATEIKLTNSETTILQLVGEGLTSREIALKLNISEGTVRKHRENLRSKLG 198

Query: 230 TKTRSGAIAYAVR 242
            +  +   AYA+R
Sbjct: 199 IRNSAEMAAYAIR 211


>gi|256828832|ref|YP_003157560.1| LuxR family transcriptional regulator [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578008|gb|ACU89144.1| transcriptional regulator, LuxR family [Desulfomicrobium baculatum
           DSM 4028]
          Length = 439

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 25/42 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LTG E+     +  G TS EIAV LG+S  T N Y ASI +K
Sbjct: 373 LTGNEIRVADMVRSGMTSKEIAVALGLSVTTANFYRASIRKK 414


>gi|163739745|ref|ZP_02147153.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107]
 gi|163743097|ref|ZP_02150479.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161383514|gb|EDQ07901.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386975|gb|EDQ11336.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107]
          Length = 214

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ ++A+ L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 147 LTGREQTILLELAQGKSNKDVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|291617509|ref|YP_003520251.1| EanR [Pantoea ananatis LMG 20103]
 gi|151175682|dbj|BAF69065.1| AHL-dependent transcriptional regulator [Pantoea ananatis]
 gi|291152539|gb|ADD77123.1| EanR [Pantoea ananatis LMG 20103]
 gi|327393946|dbj|BAK11368.1| transcriptional activator protein EanR [Pantoea ananatis AJ13355]
          Length = 249

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  EIA I GIS +TV  +I +++ K        AI   V  ++
Sbjct: 181 FSSRENEVLYWASMGKTYSEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDL 240

Query: 246 V 246
           +
Sbjct: 241 I 241


>gi|126728912|ref|ZP_01744727.1| hypothetical protein SSE37_08793 [Sagittula stellata E-37]
 gi|126710842|gb|EBA09893.1| hypothetical protein SSE37_08793 [Sagittula stellata E-37]
          Length = 273

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ ECL W+++GKT  +I  I G++ +T+  +++        +T + AIA
Sbjct: 204 LTPRQRECLQWVADGKTQADITQITGMAASTIERHLSRARDHLRVETTAQAIA 256


>gi|42780178|ref|NP_977425.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC
           10987]
 gi|42736096|gb|AAS40033.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC
           10987]
          Length = 214

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 173 FKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +K  ++H    ++  LT +E+  L  I+ G  + +IA  +GI+  TV  Y+ +I  K   
Sbjct: 137 YKRKEIHANVVEENNLTEKELFVLKAIARGNKNKDIAFDMGIAERTVKAYLTNIYNKLGV 196

Query: 231 KTRSGAIAYAVRNNIV 246
            +RS A+A ++   ++
Sbjct: 197 NSRSEAVAVSIEKKLI 212


>gi|302558086|ref|ZP_07310428.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475704|gb|EFL38797.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+ ++EG ++  I+  L ++R TV +++A +  K    +R+ A+A A+   +
Sbjct: 149 LTRRETEVLSLVAEGLSNQGISARLQLTRATVKSHLAHVYAKLGVDSRTSAVAAALELGV 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|171909746|ref|ZP_02925216.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 215

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L  RE E L  +S+G    EIA  LGIS +TVN++I  I  K   ++R+ A+A
Sbjct: 157 LAEREREVLDLLSKGFLYKEIADQLGISTHTVNSHIRRIYEKLHVRSRAQAVA 209


>gi|163753720|ref|ZP_02160843.1| Regulatory protein [Kordia algicida OT-1]
 gi|161325934|gb|EDP97260.1| Regulatory protein [Kordia algicida OT-1]
          Length = 146

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  ++EG ++ EIA +L +S +T+  +++++  K   K R+ AI  A
Sbjct: 84  LSKREYEVLCLLAEGHSNKEIASLLSVSESTIKTHVSNVYTKLDVKRRTQAIQKA 138


>gi|149927663|ref|ZP_01915916.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149823717|gb|EDM82945.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 236

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           LT REV+ +  + EG T +++AV LGIS  TV+N ++ I +K   +T
Sbjct: 168 LTPREVDVVRLLVEGHTIEQVAVSLGISGKTVSNNLSQIRQKLGVQT 214


>gi|147678376|ref|YP_001212591.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274473|dbj|BAF60222.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 223

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I  G ++ EIA  L I+  TV  +++SI+ K     R+ A   A++ N+
Sbjct: 159 LTLREKEVLQLIVNGLSNKEIAGKLNITLRTVKAHVSSILMKLNVNDRTQAAVLAIQENL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|328883875|emb|CCA57114.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 204

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFELTGREVECLTWIS 198
           G+    PK   +   RL EI +L  +  N +     + D     D  LT RE E L + +
Sbjct: 100 GVRGFVPK--TVSAQRLAEI-ILTVHAGNRYVDPELAADAIAAGDSPLTAREAEVLEFSA 156

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +G    EIA    +S  TV NY++S   K   + R  A+  A
Sbjct: 157 DGAPVAEIARRASLSPGTVRNYLSSAAAKLGAENRHAAVRLA 198


>gi|241764029|ref|ZP_04762068.1| transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN]
 gi|241366634|gb|EER61106.1| transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN]
          Length = 181

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 26/48 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELTGRE E    + EG TS EI   L IS  TV  Y A +MRK    T
Sbjct: 122 ELTGREREVAAKLLEGLTSKEIGKALEISHRTVEIYRARLMRKYNAST 169


>gi|194017154|ref|ZP_03055766.1| response regulator [Bacillus pumilus ATCC 7061]
 gi|194011022|gb|EDW20592.1| response regulator [Bacillus pumilus ATCC 7061]
          Length = 199

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE   L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI
Sbjct: 138 LTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNRIEAI 189


>gi|182412471|ref|YP_001817537.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839685|gb|ACB73937.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 225

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ +E   L  +++G T+ E+A  L +S NTV NY+ S+  K   K RS A A  V+ +
Sbjct: 160 LSAQERRVLALVADGLTNKEVAEKLRLSDNTVKNYLVSVFEKLQVKRRSQAAAVYVQAS 218


>gi|149184297|ref|ZP_01862615.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148831617|gb|EDL50050.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE+E L  I+ GK+   IA +L IS +TV  Y+  +  K     R GA   A++
Sbjct: 146 EISLSQRELEVLRLIAHGKSKPVIAQLLEISADTVGTYVKRLYAKLGVSDRVGATVKALK 205

Query: 243 NNIV 246
             ++
Sbjct: 206 LKLI 209


>gi|145595040|ref|YP_001159337.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
 gi|145304377|gb|ABP54959.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
          Length = 964

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  ++EG T+ E+   L IS  T+  +++ I  K   +TR  A A  +RN
Sbjct: 901 LTAREREVLAAVAEGLTNKEVGQRLFISERTIGVHVSHIFDKLQVRTRVQASAILLRN 958


>gi|111024873|ref|YP_707293.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110823852|gb|ABG99135.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 287

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G++ +LT RE++ L  ++ G T+ EIA  L +   TV +Y+ + M K +  +R  A+  A
Sbjct: 221 GREMQLTPREIDVLAHVALGCTNSEIAQRLSVGPQTVKSYLRAAMNKLSACSRQEAVVTA 280


>gi|186476322|ref|YP_001857792.1| LuxR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192781|gb|ACC70746.1| transcriptional regulator, LuxR family [Burkholderia phymatum
           STM815]
          Length = 181

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 27/46 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    +  GKTS +I  IL IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRILDISSRTVDVYRARLMRKYGT 168


>gi|182435857|ref|YP_001823576.1| LuxR family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464373|dbj|BAG18893.1| putative LuxR-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 255

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  +SEG  + EIA     S  TV N +  +  +   + R+ A+ YA+R+ +
Sbjct: 195 LTAREAEMIRLVSEGCDTAEIAQKTSYSERTVKNVLHEVATRLELRNRAHAVGYAMRHGL 254

Query: 246 V 246
           +
Sbjct: 255 I 255


>gi|192289348|ref|YP_001989953.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192283097|gb|ACE99477.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 225

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|146306594|ref|YP_001187059.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145574795|gb|ABP84327.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 214

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V+   +  LT R++E L  I+ G+++  IA  LG+S  TV  + A IM++         +
Sbjct: 142 VNAHAEHGLTQRQLEILRLITRGESTRSIANGLGLSVKTVEAHRAQIMKRLQIHDVPSLV 201

Query: 238 AYAVRNNIV 246
            YAVR  I+
Sbjct: 202 LYAVREGII 210


>gi|330951723|gb|EGH51983.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 87

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R  
Sbjct: 23  QLTVKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82

Query: 245 IV 246
           ++
Sbjct: 83  VI 84


>gi|271967487|ref|YP_003341683.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510662|gb|ACZ88940.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 239

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT REVE    ++ G  +  I+  L IS +TV NYI SI  K A + R+ A+  A  + 
Sbjct: 162 ELTPREVEVWRLMATGLDNTGISRTLDISLSTVKNYITSIFDKLAVRDRAQAVIVAYESG 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|295690538|ref|YP_003594231.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295432441|gb|ADG11613.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC
           21756]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +   LTG+EV  L  ++ G+++ E+A  LG+S NTV  ++A++  K     R+ AI  A
Sbjct: 72  RALGLTGQEVRVLERLAAGRSNKEMARDLGLSPNTVKTHVANLYGKLEVSRRTQAIGKA 130


>gi|239992911|ref|ZP_04713435.1| two-component system regulatory protein [Alteromonas macleodii ATCC
           27126]
          Length = 214

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)

Query: 173 FKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            K  +V + + FE    LT +EVE L  I+ G ++ EIA  +  S  T+ N ++SIM K 
Sbjct: 138 LKGLNVEF-ESFENPEPLTEKEVEILRLIAAGYSNKEIADAMFKSTGTIKNQVSSIMAKL 196

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + R+ A+  A+   ++
Sbjct: 197 GVRDRTRAVLKALEQGVI 214


>gi|254476945|ref|ZP_05090331.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
 gi|214031188|gb|EEB72023.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
          Length = 214

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ ++A+ L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 147 LTGREQTILLELAQGKSNKDVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|167589242|ref|ZP_02381630.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 56

 Score = 40.0 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + W +EGKT+ EI +ILG++  T+N +I+  + K     ++ A+  AV
Sbjct: 1   MRWAAEGKTAYEIGIILGLTERTINFHISRSIAKLDASNKTNAVVKAV 48


>gi|157693347|ref|YP_001487809.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682105|gb|ABV63249.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 199

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE   L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI
Sbjct: 138 LTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNRIEAI 189


>gi|158520046|ref|YP_001527916.1| two component LuxR family transcriptional regulator [Desulfococcus
           oleovorans Hxd3]
 gi|158508872|gb|ABW65839.1| two component transcriptional regulator, LuxR family [Desulfococcus
           oleovorans Hxd3]
          Length = 214

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  I+EG  + +IA  L IS  TV  Y +SIM+K    + +    +AVR  
Sbjct: 151 ELTERERQVLQMIAEGIKTKDIAESLHISVKTVETYRSSIMQKLGLFSVAELTKFAVREG 210

Query: 245 I 245
           I
Sbjct: 211 I 211


>gi|116878316|gb|ABK32012.1| transcriptional regulator [Burkholderia vietnamiensis]
 gi|116878319|gb|ABK32014.1| transcriptional regulator [Burkholderia vietnamiensis]
          Length = 237

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDF------ELTGREVECL 194
           IGL+ +   G  I    L E G   ++ AN    +  +H  +        ELT RE E L
Sbjct: 125 IGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYTVELTVREREAL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIA 238
            W + GKT  EI  I+ +   TV  ++ + MRK   A KT +   A
Sbjct: 185 QWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKA 230


>gi|145596350|ref|YP_001160647.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
 gi|145305687|gb|ABP56269.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
          Length = 268

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EGK++ EI   L +S +TV  +   + RK   + R+ A+A   R  +
Sbjct: 207 LTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGL 266

Query: 246 V 246
           V
Sbjct: 267 V 267


>gi|326440343|ref|ZP_08215077.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +  +LT RE + L  ++ G T+ EIA  +G+   TV +++A+++ KT  + R+ A+  
Sbjct: 158 WAR--KLTEREADTLRLMAAGLTNGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVIL 215

Query: 240 AVRNNIV 246
           A  +  +
Sbjct: 216 AYESGFI 222


>gi|291451544|ref|ZP_06590934.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354493|gb|EFE81395.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 238

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ REVE +  I+ G ++ +IA    IS  TV N+I  I  K     RS AIA
Sbjct: 172 LSSREVEVMELIASGMSNQQIAATCFISEKTVKNHINRIFAKLHAPNRSAAIA 224


>gi|197105485|ref|YP_002130862.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196478905|gb|ACG78433.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 255

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LT RE++ L W + GKT  EI  I+ IS  TV  +I +  RK     R+ A+
Sbjct: 184 HLTRREIQVLKWAAAGKTDAEIGRIVSISTPTVRFHITNASRKLGVAGRAQAV 236


>gi|126732495|ref|ZP_01748294.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Sagittula stellata E-37]
 gi|126707134|gb|EBA06201.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Sagittula stellata E-37]
          Length = 253

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT  +IA I+G+++ T+  ++         +T + A+A A  +N
Sbjct: 188 LTPRQREALEWVGDGKTMQDIAQIMGLTQATIEKHLRLARETLNVETTAQAVAKAAFHN 246


>gi|114320166|ref|YP_741849.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226560|gb|ABI56359.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 219

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G+++  IA  LG+   TV  ++ SI++K    +R  A  +AV++ 
Sbjct: 157 ELTSRESEILRHIAKGQSNKMIARDLGLMEGTVKVHVKSILKKLRMHSRVEAAVWAVQHG 216


>gi|504484|gb|AAC44880.1| AcoK [Klebsiella pneumoniae]
          Length = 921

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+ A++ A+   
Sbjct: 859 ELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 918

Query: 245 IV 246
           ++
Sbjct: 919 LL 920


>gi|37519948|ref|NP_923325.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210940|dbj|BAC88320.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 212

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +W  G +AAY     +S      +D++LT RE + L  ++ G ++ +I   L IS  TV 
Sbjct: 127 VWWDGRVAAY----LRSGPEPERRDYQLTPRERQVLGLLANGLSNQQIGRQLFISVGTVQ 182

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ +I+RK   + R+ A   A++  ++
Sbjct: 183 VHVHTILRKLGARDRTQAAILALQEGLM 210


>gi|284041827|ref|YP_003392167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946048|gb|ADB48792.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE++ L  +++G ++ E+A  L +S  TV  +++S++RK   + R  A+  A
Sbjct: 154 DLTERELDVLRLVAQGLSNAELAAYLVLSEATVKTHVSSVLRKLGLRDRVQAVVLA 209


>gi|302517773|ref|ZP_07270115.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302426668|gb|EFK98483.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 219

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 168 YQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           + A + +  D H G+       LTGRE E L  ++ G ++ EIA  L +   TV  ++++
Sbjct: 128 FPAAVRRLADHHGGRAPAPFPGLTGREGEVLRLMARGLSNAEIAARLVVGAETVKTHVSA 187

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K   + R+ A+  A  +  V
Sbjct: 188 VLAKLGARDRTQAVVLAYDSGFV 210


>gi|110680018|ref|YP_683025.1| transcription regulatory protein degU, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456134|gb|ABG32339.1| transcription regulatory protein degU, putative [Roseobacter
           denitrificans OCh 114]
          Length = 216

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 151 LTGREQTILLQLAQGKSNKDVATALDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 210

Query: 246 V 246
           +
Sbjct: 211 L 211


>gi|160878241|ref|YP_001557209.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426907|gb|ABX40470.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 212

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 173 FKSYDVHWGKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           F S  +H    F+  G   RE++ +  ++EG ++ EIA  L IS  TV N+I++I+ K  
Sbjct: 134 FTSRSIHTNTGFDPNGYTTRELDIIASVAEGLSNKEIAKKLFISEGTVKNHISTILEKGG 193

Query: 230 TKTRSGAIAY 239
              R+    Y
Sbjct: 194 FSHRTQLAVY 203


>gi|90994534|ref|YP_537024.1| hypothetical chloroplast protein 29 [Porphyra yezoensis]
 gi|122244619|sp|Q1XDE4|YCF29_PORYE RecName: Full=Probable transcriptional regulator ycf29
 gi|90819098|dbj|BAE92467.1| unnamed protein product [Porphyra yezoensis]
          Length = 222

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +I RD L E  L  +  +N              LT RE   L  + +G T+ EI+ IL  
Sbjct: 119 LIARDVLKEASLQNSATSNQ------QLNHKIRLTPREKSILDLVVDGLTNKEISTILNT 172

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYA 240
           S   V  Y++ ++ KT  K R+  + Y+
Sbjct: 173 SVRNVEKYVSRLLHKTNMKNRTLLVKYS 200


>gi|300788437|ref|YP_003768728.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797951|gb|ADJ48326.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTGRE + L    +G T  ++A  L +S  TV N++++ + KT  +TR+ A+  A
Sbjct: 141 LTGRERDVLREAKDGSTVADVARALHLSEGTVRNHLSAAIGKTGARTRAEAVRVA 195


>gi|297158982|gb|ADI08694.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 235

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG ++ EIA  L +S  TV  +++ ++ K   + R+ A+  A    +
Sbjct: 157 LTPRETEVLRLIAEGLSNAEIAARLTVSAETVKTHVSRVLAKLGARDRAQAVMLAYEFGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|296282761|ref|ZP_06860759.1| regulatory protein, LuxR [Citromicrobium bathyomarinum JL354]
          Length = 252

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 6/65 (9%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI--ASI----MRKTATKTRSGAIAY 239
           L+ REVECL W + GKT  EI++I+  SR TV  ++  ASI    + ++ T  ++  + Y
Sbjct: 188 LSKREVECLRWAAIGKTDLEISMIMSRSRATVRFHMHNASIKLNAVNRSQTVFKAAQLGY 247

Query: 240 AVRNN 244
             +NN
Sbjct: 248 ISQNN 252


>gi|282866852|ref|ZP_06275887.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282558300|gb|EFB63867.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 201

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           LTGRE + L   +EG T  +IA  L +S+ TV N+++S + KT  +T
Sbjct: 141 LTGREADVLRVAAEGGTVADIARALRLSQGTVRNHLSSAIGKTQART 187


>gi|312195247|ref|YP_004015308.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226583|gb|ADP79438.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 220

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++G  +  IA  LG+S  TV N+++SI+ K     R+ AI  A R  
Sbjct: 156 QLTDREREVLVLVADGWPNHRIAHRLGLSAKTVANHVSSILAKLHAPDRAAAILQARRAG 215

Query: 245 I 245
           +
Sbjct: 216 L 216


>gi|167950425|ref|ZP_02537499.1| two component transcriptional regulator, LuxR family protein
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 119

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           LT RE E +  ++ GK + EIA  LG+S  TV  + A +M K A ++
Sbjct: 54  LTPREHEVMEMVTTGKANKEIANALGVSAKTVEAHRARVMEKMAARS 100


>gi|75812776|ref|YP_320393.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705532|gb|ABA25204.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 209

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+  L  +++G ++ EIA  L I   TV +++  I+ K     R+ A+  AV+  
Sbjct: 146 ELSERELAVLRSLAQGMSNAEIAAALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKRG 205

Query: 245 IV 246
           IV
Sbjct: 206 IV 207


>gi|108805405|ref|YP_645342.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766648|gb|ABG05530.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 207

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE+E L  ++ G T+ E+A  L IS  TV  +++S++ K   + R+ A+A A
Sbjct: 140 GESEPLTPRELEVLRLVARGLTNREVARALFISERTVKFHVSSLLAKLRAENRTQAVAIA 199


>gi|319782058|ref|YP_004141534.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167946|gb|ADV11484.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 208

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++EG  +  IA  L IS +T   ++A+I+ K     R+ AIA A+R  +
Sbjct: 146 LSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIATAMRQGL 205

Query: 246 V 246
           V
Sbjct: 206 V 206


>gi|326773122|ref|ZP_08232406.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326637754|gb|EGE38656.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 246

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 42/80 (52%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A  A+   SY      D  LT RE+E L  +++G ++ E+A  L +   T+  ++  +M+
Sbjct: 165 AGGASGHVSYAGPASVDVALTSRELEVLRLLAQGMSNSEMAAHLYVEPTTIKYHLTGLMQ 224

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           KT ++ R   + + +R  +V
Sbjct: 225 KTGSRDRLQTVLWGIRAGLV 244


>gi|260597411|ref|YP_003209982.1| DNA-binding transcriptional regulator CsgD [Cronobacter turicensis
           z3032]
 gi|260216588|emb|CBA29849.1| Probable csgAB operon transcriptional regulatory protein
           [Cronobacter turicensis z3032]
          Length = 215

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+ +A
Sbjct: 155 LTHREKEILNKLRFGASNMEIARSLFISENTVKTHLYNLFKKLAVKNRTQAVTWA 209


>gi|291298136|ref|YP_003509414.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567356|gb|ADD40321.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 216

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE+E +  I+ G+T+ E+A  L IS +TV ++++SI  K   + R    A+A  
Sbjct: 150 DHRLSDRELEVVRAIAIGRTNQEVAAELFISLSTVKSHVSSIQAKLGARNRVAIAAWAWE 209

Query: 243 NNIV 246
           + +V
Sbjct: 210 HRVV 213


>gi|325917865|ref|ZP_08180041.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535911|gb|EGD07731.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           REV  L  ++ G ++ EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+
Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAI 205


>gi|319942246|ref|ZP_08016561.1| two component transcriptional regulator [Sutterella wadsworthensis
           3_1_45B]
 gi|319804119|gb|EFW01019.1| two component transcriptional regulator [Sutterella wadsworthensis
           3_1_45B]
          Length = 287

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I  G+ + +IA  LGIS  TV  + ASIM KTA+ T +  +   V++ 
Sbjct: 155 KLTPREQQVLERIVNGRLNKQIADDLGISIKTVEAHRASIMDKTASGTVADLMRVVVKSE 214

Query: 245 I 245
           +
Sbjct: 215 L 215


>gi|318060416|ref|ZP_07979139.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078887|ref|ZP_07986219.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 219

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 168 YQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           + A + +  D H G+       LTGRE E L  ++ G ++ EIA  L +   TV  ++++
Sbjct: 128 FPAAVRRLADHHGGRAPAPFPGLTGREGEVLRLMARGLSNAEIAARLVVGAETVKTHVSA 187

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K   + R+ A+  A  +  V
Sbjct: 188 VLAKLGARDRTQAVVLAYDSGFV 210


>gi|289668073|ref|ZP_06489148.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 230

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 168 LTRRERECLQYSAKGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEAV 219


>gi|271501434|ref|YP_003334459.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344989|gb|ACZ77754.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586]
          Length = 250

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 168 YQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +Q + F  +D      +  +L+ RE ECL W +EG T+ EIA  L  S  TV  ++ +  
Sbjct: 168 FQESAFPLFDASMLTCRHVKLSNRERECLAWSAEGLTAKEIARKLHRSVATVTLHLNTAA 227

Query: 226 RKTATKTRSGAIAYAV 241
           +K     R  A+  A+
Sbjct: 228 KKLGATNRVQAVVRAL 243


>gi|111020952|ref|YP_703924.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110820482|gb|ABG95766.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 207

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE++ LT ++ G+++ EI   L +S  TV +++  I  K   K+R+ AIA A
Sbjct: 145 LSPREIQVLTLVAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAIARA 199


>gi|66767622|ref|YP_242384.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|66572954|gb|AAY48364.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 254

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G T+  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|37679701|ref|NP_934310.1| putative response regulator [Vibrio vulnificus YJ016]
 gi|320156547|ref|YP_004188926.1| putative response regulator [Vibrio vulnificus MO6-24/O]
 gi|37198446|dbj|BAC94281.1| putative response regulator [Vibrio vulnificus YJ016]
 gi|319931859|gb|ADV86723.1| putative response regulator [Vibrio vulnificus MO6-24/O]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 36/54 (66%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G  +EL+G+E +   ++ +G ++ EI+  L +S +TV ++++ I+ KT  ++RS
Sbjct: 150 GSKYELSGKEQKVFLYLLQGYSNKEISEQLNVSLSTVKSHVSHILCKTGKQSRS 203


>gi|119715235|ref|YP_922200.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119535896|gb|ABL80513.1| two component transcriptional regulator, LuxR family [Nocardioides
           sp. JS614]
          Length = 218

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT +E   L  I +G T+ +IA  L ++  TV NY++S++ K   ++R+ A  +A ++
Sbjct: 157 QLTAQEQRILELIGQGMTNRQIAAHLCLAEKTVKNYVSSMLAKLGLESRTQAAIFATKH 215


>gi|253989299|ref|YP_003040655.1| nitrate/nitrite response regulator protein narp [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780749|emb|CAQ83911.1| nitrate/nitrite response regulator protein narp [Photorhabdus
           asymbiotica]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +G+ +  +++++      + AN  K    H     ELT RE++ L  +S G T+ E+A 
Sbjct: 121 ARGQTVFSEKIYQ------HLANRHK----HVDPLSELTKRELDVLKEVSSGMTNKEVAD 170

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGA 236
           +L IS  TV  +I ++++K   ++R  A
Sbjct: 171 VLFISEETVKVHIRNLLKKLNVRSRLAA 198


>gi|256381033|ref|YP_003104693.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255925336|gb|ACU40847.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 219

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++G T+ +IA  L IS  TV N++ S +RK     R     YA+ + 
Sbjct: 153 QLTDRETEVLRLVAKGLTARQIATRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHG 212

Query: 245 I 245
           +
Sbjct: 213 L 213


>gi|171914538|ref|ZP_02930008.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 236

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK-----TATKTRSGAIAYA 240
           L+ RE E L  I+EGK + E A IL IS  TV  +  S+M K     TA+ TR  AIA  
Sbjct: 157 LSSRETEVLQLIAEGKANKETAEILHISVKTVEKHRQSLMEKLNIHDTASLTRH-AIATG 215

Query: 241 V 241
           +
Sbjct: 216 I 216


>gi|167583991|ref|ZP_02376379.1| Autoinducer-binding domain protein [Burkholderia ubonensis Bu]
          Length = 275

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           G +  LT  E   L W  +GKTS E+A IL +S  TVN ++ +I+ K  T
Sbjct: 209 GNEIHLTEMEKTILRWTVDGKTSGELATILEVSVRTVNFHVQNILMKMNT 258


>gi|170725009|ref|YP_001759035.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810356|gb|ACA84940.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 221

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   ++ +S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTSRERTIISLVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203


>gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 242

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N++
Sbjct: 181 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHL 240

Query: 246 V 246
           V
Sbjct: 241 V 241


>gi|37526610|ref|NP_929954.1| nitrate/nitrite response regulator protein NarP [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786042|emb|CAE15094.1| Nitrate/nitrite response regulator protein NarP [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +G+ +  +++++      + AN  K    H     ELT RE++ L  +S G T+ E+A 
Sbjct: 121 ARGQTVFSEKIYQ------HLANRHK----HVDPLSELTKRELDVLKEVSSGMTNKEVAD 170

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGA 236
           +L IS  TV  +I ++++K   ++R  A
Sbjct: 171 VLFISEETVKVHIRNLLKKLNVRSRLAA 198


>gi|332663474|ref|YP_004446262.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332288|gb|AEE49389.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 227

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T RE E L  I E  T+ EIA  L IS  TV+ +  +++ K + K  +G + YA++  
Sbjct: 154 DITSREKEILQLICEEYTTSEIAEKLFISPRTVDGHRNNLLEKLSCKNVAGLVVYAIQYQ 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|238061024|ref|ZP_04605733.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237882835|gb|EEP71663.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 268

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EGK++ EI   L +S +TV  +   + RK   + R+ A+A   R  +
Sbjct: 207 LTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGL 266

Query: 246 V 246
           V
Sbjct: 267 V 267


>gi|251795413|ref|YP_003010144.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247543039|gb|ACT00058.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 235

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +  G+++ EIAV  G+S +TV N++ +I++K     R     YA    +
Sbjct: 173 LTAREKDILERVVTGESNKEIAVAFGLSEHTVKNHLKNILQKLHLDNRVQLTRYAYEQGM 232

Query: 246 V 246
           +
Sbjct: 233 L 233


>gi|118470646|ref|YP_887553.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171933|gb|ABK72829.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 219

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L ++++G T+ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 158 LTERETEILRYVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217


>gi|86131430|ref|ZP_01050028.1| two-component system response regulator, LuxR family [Dokdonia
           donghaensis MED134]
 gi|85817875|gb|EAQ39043.1| two-component system response regulator, LuxR family [Dokdonia
           donghaensis MED134]
          Length = 209

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQAN-----MFKSYDVHWGKDFELTGREVECLTWISEG 200
           LL    + +L + L E+ +   Y  N     + KS D    +D EL  RE+E +      
Sbjct: 104 LLKDTEKKVLENALNELIINGYYHTNTVSQLLVKSLDGD-NRD-ELRDREIEFIKHACTE 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T +EIA ++ +S  TV  Y  S+  K   K R+G + YA++N +
Sbjct: 162 MTYNEIASVMFLSPKTVQGYRDSVFSKLNLKNRTGLVIYALKNGL 206


>gi|320095298|ref|ZP_08026990.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977771|gb|EFW09422.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 222

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  +S G T  +IA  + +S+ TV N+++S M KT  +TR+ A+  A  + 
Sbjct: 162 LTERESDVLRAVSTGGTIADIAREMRLSQGTVRNHVSSAMLKTEARTRAEAVRIATESG 220


>gi|312278646|gb|ADQ63303.1| Two-component system transcriptional regulator (CheY domain and
           HTH-like DNA-binding domain), putative [Streptococcus
           thermophilus ND03]
          Length = 200

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  +++G T+ EIA  L +S  T+ NY+ +I+ K     R+ A+  A
Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTIRNYMTAILTKLDAGNRTDAVRIA 193


>gi|229542625|ref|ZP_04431685.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229327045|gb|EEN92720.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 218

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + T RE E ++ I++G ++ EIA  L IS  TV NYI SI  KT  + R+    Y
Sbjct: 151 KFTEREREIMSLIAKGFSNKEIAKTLYISEGTVANYITSIFGKTGLEHRTQIAVY 205


>gi|170738992|ref|YP_001767647.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168193266|gb|ACA15213.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 217

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LTGR++  L  ++EG++  + A  L +S  TV+N +A I  +     R G + +A+R+ 
Sbjct: 147 LTGRQLRILRLMAEGRSQRQAAEALLVSAKTVSNEVAVIRERVRAGDRPGLVRFALRHR 205


>gi|221069868|ref|ZP_03545973.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220714891|gb|EED70259.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 230

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE++ L  +++G T+ EIA  L +SR TV  ++ +I RK A  +R+ A++ A
Sbjct: 169 LSTRELQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEA 223


>gi|85858285|ref|YP_460487.1| GerE family transcriptional regulator [Syntrophus aciditrophicus
           SB]
 gi|85721376|gb|ABC76319.1| transcriptional regulator GerE family [Syntrophus aciditrophicus
           SB]
          Length = 586

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT +E++    I EG TS EIA +L IS+  ++ Y   I +K   K +   +   +RN
Sbjct: 527 LTAKEIQIAALIKEGMTSKEIAELLNISKREIDFYRGKIRKKMGLKNKKFNLQLLLRN 584


>gi|88801325|ref|ZP_01116853.1| putative nitrate/nitrite DNA-binding response regulator
           [Polaribacter irgensii 23-P]
 gi|88781983|gb|EAR13160.1| putative nitrate/nitrite DNA-binding response regulator
           [Polaribacter irgensii 23-P]
          Length = 221

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  +S+  ++ EIA  + IS +TV +Y   ++RK   K   G   YAV+ N+
Sbjct: 161 LTEREKNVLRLVSKELSTSEIAEKMNISHHTVESYRKKLLRKLNVKNSVGLAIYAVKYNL 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|330821298|ref|YP_004350160.1| PAS/PAC domain protein [Burkholderia gladioli BSR3]
 gi|327373293|gb|AEA64648.1| PAS/PAC domain protein [Burkholderia gladioli BSR3]
          Length = 541

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE +    +  G    EIA  LG++ NTV N++++I  K    +R  AI +A    
Sbjct: 439 DLTARERDVFDLLCHGLPDKEIANRLGLAPNTVRNHVSTIYNKLDVHSRGEAIVWARERG 498

Query: 245 IV 246
           IV
Sbjct: 499 IV 500


>gi|302518123|ref|ZP_07270465.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|318059111|ref|ZP_07977834.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079115|ref|ZP_07986447.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333028198|ref|ZP_08456262.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|302427018|gb|EFK98833.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|332748050|gb|EGJ78491.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 223

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  +A  + +
Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVFAYESGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|256376371|ref|YP_003100031.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920674|gb|ACU36185.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 956

 Score = 40.0 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+GRE E    +SEG T+ EIA  L +S  TV  ++A +  K   ++R G +
Sbjct: 898 LSGREREVARLVSEGLTNREIAERLSLSAKTVEAHLARVFTKLGVRSRVGVV 949


>gi|111017509|ref|YP_700481.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110817039|gb|ABG92323.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 430

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  ++ GK +  IA  LGIS++T+  ++AS++ K     R  A A  +R  I
Sbjct: 359 LNPRELEVLAHLAVGKRNRAIAEELGISQSTIKFHVASVLEKLDVANRGEAGAIGIRAGI 418

Query: 246 V 246
            
Sbjct: 419 A 419


>gi|86740192|ref|YP_480592.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86567054|gb|ABD10863.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 231

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E   L  I+EG T+ +IA  + ++  TV NY++S++ K   ++R+ A  +A R N
Sbjct: 172 LTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLSKLGLESRTQAAVFATRLN 230


>gi|27366033|ref|NP_761561.1| putative response regulator [Vibrio vulnificus CMCP6]
 gi|27362233|gb|AAO11088.1| Putative response regulator [Vibrio vulnificus CMCP6]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 36/54 (66%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G  +EL+G+E +   ++ +G ++ EI+  L +S +TV ++++ I+ KT  ++RS
Sbjct: 150 GSKYELSGKEQKVFLYLLQGYSNKEISEQLNVSLSTVKSHVSHILCKTGKQSRS 203


>gi|87123676|ref|ZP_01079526.1| possible DNA-binding response regulator [Synechococcus sp. RS9917]
 gi|86168245|gb|EAQ69502.1| possible DNA-binding response regulator [Synechococcus sp. RS9917]
          Length = 261

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   EL+ RE + L  +  G ++ EIA  L +S +TV ++++S++RK     R+ A+  A
Sbjct: 180 GPLAELSLREEDVLRGLCRGMSNQEIADALVVSIDTVKSHVSSLLRKLPANDRTHAVVVA 239

Query: 241 VRNNIV 246
            R  +V
Sbjct: 240 FREGLV 245


>gi|328880804|emb|CCA54043.1| hypothetical protein SVEN_0756 [Streptomyces venezuelae ATCC 10712]
          Length = 1065

 Score = 40.0 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            LT RE E    ++EG T+  +A  L +S  TV +++A + RKT  +TR+G
Sbjct: 977  LTPREREISVLVAEGLTNQAVAERLCLSPRTVESHVARVYRKTGVETRAG 1026


>gi|262198719|ref|YP_003269928.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262082066|gb|ACY18035.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM
           14365]
          Length = 373

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + LT RE +   WI +GK + +IA ILGI   TV  +   I  K   + R+
Sbjct: 301 YPLTAREAQVAWWICQGKNNPDIATILGIRPATVKKHTERIYFKLGVENRT 351


>gi|172064983|ref|YP_001815695.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997225|gb|ACB68142.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 239

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + +W    + A  +N+  S DV       L+ RE + L W +EGKT+ E+AVIL +S   
Sbjct: 147 EMIWFCQFVHATMSNLIVS-DVMPSGAMRLSLREKQVLHWTAEGKTAAEVAVILQLSERN 205

Query: 217 VNNYIASIMRKTATKTRSGAIAYAV 241
           V  +I + + K     ++ A   A 
Sbjct: 206 VGFHIQNAIDKLDAANKTHATVKAA 230


>gi|82775346|ref|NP_835013.2| two-component response regulator YocG [Bacillus cereus ATCC 14579]
          Length = 163

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++
Sbjct: 115 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVL 160


>gi|56696391|ref|YP_166748.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56678128|gb|AAV94794.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 234

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT ++   L  + EGK + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A + +
Sbjct: 164 LTNQQARILQLVCEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIAKKTS 222


>gi|301057012|gb|ADK54837.1| two component regulator [uncultured soil bacterium]
          Length = 223

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+  ELT RE E L+ I++G ++ EIA  L ++  T   +++ I+ K   + R+ A  +A
Sbjct: 153 GRIGELTERETEVLSLIAQGLSNAEIATRLVVAEQTTKTHVSRILIKLGLRDRTQAAVFA 212

Query: 241 VRNNIV 246
               +V
Sbjct: 213 YETGLV 218


>gi|302869871|ref|YP_003838508.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|315501333|ref|YP_004080220.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302572730|gb|ADL48932.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|315407952|gb|ADU06069.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 272

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EGK++ EI   L +S +TV  +   + RK   + R+ A+A   R  +
Sbjct: 211 LTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGL 270

Query: 246 V 246
           V
Sbjct: 271 V 271


>gi|159045105|ref|YP_001533899.1| response regulator protein [Dinoroseobacter shibae DFL 12]
 gi|157912865|gb|ABV94298.1| response regulator protein [Dinoroseobacter shibae DFL 12]
          Length = 213

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I  GK +  IA  LGI  +TV N++ S++ K   + R  A A   R 
Sbjct: 152 MQLTRREREILDLIERGKPNKVIACTLGIEVSTVKNHVHSLLGKLGVRRRGEAAALHRRR 211

Query: 244 N 244
           +
Sbjct: 212 S 212


>gi|239979679|ref|ZP_04702203.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 281

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ REVE +  I+ G ++ +IA    IS  TV N+I  I  K     RS AIA
Sbjct: 215 LSSREVEVMELIASGMSNQQIAATCFISEKTVKNHINRIFAKLHAPNRSAAIA 267


>gi|39979986|gb|AAR32909.1| SplR [Serratia plymuthica]
          Length = 249

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 29/56 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            T RE E L W S GKT  EIA I GIS +TV  ++ +I+ K        AI   V
Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGV 236


>gi|296160955|ref|ZP_06843767.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295888844|gb|EFG68650.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 216

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ G+T  EIAV L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVLKRIAAGQTITEIAVELCVSSKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|294142434|ref|YP_003558412.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328903|dbj|BAJ03634.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 221

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTNRERTIIKLVSSGARNKEIAHQLCISEHTVKAHISSIFRKTQSRNR 203


>gi|56718415|gb|AAW27922.1| SplR [Serratia plymuthica]
          Length = 249

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            T RE E L W S GKT  EIA I GIS +TV  ++ +I+ K        AI   V 
Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVE 237


>gi|15890276|ref|NP_355948.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158472|gb|AAK88733.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 492

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE + L+ I +G +  E++  L +S++T+ N+IAS+  K     R+ A+ +A
Sbjct: 426 DLTDREEQILSLICDGSSDKEMSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIWA 481


>gi|21232249|ref|NP_638166.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|21114010|gb|AAM42090.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 258

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G T+  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 196 LTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAV 247


>gi|51891164|ref|YP_073855.1| two-component response regulator variant [Symbiobacterium
           thermophilum IAM 14863]
 gi|51854853|dbj|BAD39011.1| two-component response regulator variant [Symbiobacterium
           thermophilum IAM 14863]
          Length = 78

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 30/57 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ELT RE E    + +G TS  IA  L IS  T + + ASIMRK    T    + YAV
Sbjct: 8   ELTPREQEVFRLLVDGYTSKAIARALYISPKTADKHRASIMRKLEVNTFPELVRYAV 64


>gi|302559828|ref|ZP_07312170.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477446|gb|EFL40539.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 200

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S + K   + R 
Sbjct: 129 AADAIAAGDSPLTAREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVTKLGAENRH 188

Query: 235 GAIAYA 240
            A+  A
Sbjct: 189 AAVRLA 194


>gi|299132715|ref|ZP_07025910.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
 gi|298592852|gb|EFI53052.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
          Length = 241

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE ECL W ++GK++ EI  +L ISR T   ++ +   K   +T   A+A
Sbjct: 179 LSPREFECLEWAAQGKSAWEIGRLLNISRRTAAFHLDNAKMKFGVRTICQAVA 231


>gi|270264188|ref|ZP_06192455.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13]
 gi|270041837|gb|EFA14934.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13]
          Length = 249

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 29/56 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            T RE E L W S GKT  EIA I GIS +TV  ++ +I+ K        AI   V
Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGV 236


>gi|268609438|ref|ZP_06143165.1| two component LuxR family transcriptional regulator [Ruminococcus
           flavefaciens FD-1]
          Length = 209

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 34/51 (66%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + ++ +E E L  ++EGK++ EI+  L +S  TV NYI+S++ K + + R+
Sbjct: 146 YGISDKEKEILELVAEGKSNKEISSELFLSEGTVRNYISSLLDKLSLRDRT 196


>gi|237846558|gb|ACR22887.1| SplR [Serratia plymuthica]
          Length = 249

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 29/56 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            T RE E L W S GKT  EIA I GIS +TV  ++ +I+ K        AI   V
Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGV 236


>gi|269954857|ref|YP_003324646.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269303538|gb|ACZ29088.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 80

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   L+ ++E  T ++IA  L ++RNTV + + S+ RK    TR+ A+A+A
Sbjct: 18  LTRREQVVLSNLTEDVTLEQIATKLFVTRNTVKSQVRSVYRKIGVSTRADAVAWA 72


>gi|297203955|ref|ZP_06921352.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713149|gb|EDY57183.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 894

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+ RE + L  +++  +++EIAV L +S NTV  ++ S+ RK A   RS A+  A
Sbjct: 833 ELSERERDVLQRLAQMMSTEEIAVDLYLSVNTVKTHLKSLYRKLAVNRRSEAVHRA 888


>gi|148555723|ref|YP_001263305.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148500913|gb|ABQ69167.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1]
          Length = 146

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +   +T RE+  L  ++ G+++ EIA+ L +S NTV  ++A +  K     R+ A+A A
Sbjct: 81  ESLGITPRELAVLRELAAGRSNKEIAIRLAVSPNTVKTHVARLFEKLGAARRTDALARA 139


>gi|86132592|ref|ZP_01051185.1| two-component system response regulator, LuxR family [Dokdonia
           donghaensis MED134]
 gi|85816834|gb|EAQ38019.1| two-component system response regulator, LuxR family [Dokdonia
           donghaensis MED134]
          Length = 212

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 7/111 (6%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y + T DV RI I  +    KG I L + L +  L+    A    +Y     K  +L+ R
Sbjct: 101 YVAKTADVERI-INAITQVQKGGIYLNEALSQ-RLVNDGNATQGLAY-----KYKKLSSR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           E+E L  +S GK + EIA  L I+  TV+ Y   +++K   +  +  I +A
Sbjct: 154 EIEVLNLLSNGKRNKEIAADLDINEKTVSTYKMRLLKKLEAQNVAELIKHA 204


>gi|85707086|ref|ZP_01038174.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           217]
 gi|85668372|gb|EAQ23245.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           217]
          Length = 224

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L W + GK+  +I  IL IS  TV  ++ S  +K    T   AI  A+   +
Sbjct: 161 LSTREIEILQWTAAGKSQQDIGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGL 220

Query: 246 V 246
           +
Sbjct: 221 I 221


>gi|325001951|ref|ZP_08123063.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 223

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G T+ +IA  L +S  TV +++ + +RK     RS  + YA+   +
Sbjct: 162 LTERETEVLRLVAKGMTARQIAAKLVVSHRTVESHVQNTLRKLQLHNRSQLVRYAIEQGL 221


>gi|294676640|ref|YP_003577255.1| LuxR family autoinducer-binding transcriptional regulator
           [Rhodobacter capsulatus SB 1003]
 gi|294475460|gb|ADE84848.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacter capsulatus SB 1003]
          Length = 261

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE ECL   ++G+++ E + ++  S  TV  ++ + +RK   + RS A+A AVR  +
Sbjct: 201 LSARERECLDHAAQGRSAKETSRLIERSVPTVVMHLNAAVRKLGARNRSHAVAEAVRRGL 260

Query: 246 V 246
           +
Sbjct: 261 I 261


>gi|319794441|ref|YP_004156081.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596904|gb|ADU37970.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS]
          Length = 504

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  IS+G+ + E+A  LGIS  TV  ++  +  K    TR+ A   A    +
Sbjct: 444 LSERELEVLRCISKGENTKEVARALGISPRTVRTHVERVFLKLECSTRAAATLKAATRGL 503

Query: 246 V 246
           +
Sbjct: 504 I 504


>gi|239980581|ref|ZP_04703105.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291452439|ref|ZP_06591829.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355388|gb|EFE82290.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 228

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+  ELT RE E L  I++G ++ EIA  L ++ +TV  +++ I+ K + + R+ A  +A
Sbjct: 155 GQYGELTERETEVLVQIAQGLSNAEIADRLFVAESTVKTHVSRILVKLSLRDRTQAAVFA 214

Query: 241 VRNNIV 246
               +V
Sbjct: 215 YEAGLV 220


>gi|229822851|ref|ZP_04448921.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271]
 gi|229787664|gb|EEP23778.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  I +G ++  IA  L I+  TV  ++++I  K   + R+ A  YAV ++
Sbjct: 148 ELTNRELDVLRLIGQGYSNQAIAEELVITLKTVKTHVSNIFTKLEVEDRTQAAIYAVHHH 207

Query: 245 I 245
           +
Sbjct: 208 L 208


>gi|149203939|ref|ZP_01880907.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           TM1035]
 gi|149142381|gb|EDM30426.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           TM1035]
          Length = 224

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 11/101 (10%)

Query: 157 DRLWEI---GLLAAYQANMFKSYDVHWGKDF--------ELTGREVECLTWISEGKTSDE 205
           +R W++   G++   QA     +D+    D          L+ RE+E L W + GK+  +
Sbjct: 121 EREWQLLISGIIGNLQAAAVHMHDMVIQSDPLTRMLNTPSLSTREIEILQWTAAGKSQQD 180

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I  IL IS  TV  ++ S  +K    T   AI  A+   ++
Sbjct: 181 IGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221


>gi|149203303|ref|ZP_01880273.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
 gi|149143136|gb|EDM31175.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
          Length = 240

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT ++   L  I EG+ + +IA  L I+  TV  ++ +IMRK   +TR+ A+  A
Sbjct: 173 LTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAVLIA 227


>gi|94310097|ref|YP_583307.1| LuxR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353949|gb|ABF08038.1| transcriptional regulator, LuxR family [Cupriavidus metallidurans
           CH34]
          Length = 181

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELT RE +    + EGKTS +I  +L IS  TV+ Y A +M+K    T
Sbjct: 123 ELTARERDIAAQLVEGKTSKQIGKLLAISPRTVDIYRARLMKKYGAHT 170


>gi|300782196|ref|YP_003762487.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
 gi|299791710|gb|ADJ42085.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
          Length = 969

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G   EL+ RE E    ++EG+T+ EIA  L +S  TV  ++A ++RK   ++R+
Sbjct: 900 GYGSELSPREREVARMLAEGRTNREIADGLFLSPRTVEQHVAKVLRKLGARSRT 953


>gi|282859564|ref|ZP_06268669.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
 gi|282587792|gb|EFB92992.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
          Length = 200

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV +  
Sbjct: 135 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|302867979|ref|YP_003836616.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|302570838|gb|ADL47040.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
          Length = 979

 Score = 40.0 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  ++EG T+ EI   L IS  T+  +++ I  K   +TR  A A  +RN
Sbjct: 919 LTAREREVLAAVAEGLTNREIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRN 976


>gi|209546605|ref|YP_002278523.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537849|gb|ACI57783.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I YA+ + I
Sbjct: 150 LTPREHDILGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGIATTAGLIRYALDHGI 209


>gi|218528441|ref|YP_002419257.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218520744|gb|ACK81329.1| transcriptional regulator, LuxR family [Methylobacterium
           chloromethanicum CM4]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  I  G   D IA  L +SRNTV N+ A++ RK     R+ A+ +   N 
Sbjct: 420 LTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 478


>gi|167646647|ref|YP_001684310.1| two component LuxR family transcriptional regulator [Caulobacter
           sp. K31]
 gi|167349077|gb|ABZ71812.1| two component transcriptional regulator, LuxR family [Caulobacter
           sp. K31]
          Length = 222

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  +  ++E +++  IA +L IS  TV ++  +IMRK    + +  + YA+RN +
Sbjct: 160 LTTRELLIVQLLAESRSNKVIASMLDISVKTVESHRGNIMRKLGAHSLADIVRYAIRNKL 219

Query: 246 V 246
           +
Sbjct: 220 I 220


>gi|94985726|ref|YP_605090.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94556007|gb|ABF45921.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 194

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +++G ++ EIA  LG+S +TV +++A +  K     R+ A++ A
Sbjct: 133 LTPRESEVLPLLAQGYSNKEIAKNLGVSPDTVKDHLARLYAKLDAGDRTEAVSRA 187


>gi|320333891|ref|YP_004170602.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755180|gb|ADV66937.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 228

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    +R+ A+ Y ++
Sbjct: 162 LSPRELEVLRIAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLYGIK 218


>gi|307945008|ref|ZP_07660345.1| putative two component LuxR family transcriptional regulator
           [Roseibium sp. TrichSKD4]
 gi|307771932|gb|EFO31156.1| putative two component LuxR family transcriptional regulator
           [Roseibium sp. TrichSKD4]
          Length = 256

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +  +F L+ RE+E L  +++G +S +IA I+ IS  TV  + A+I RKT
Sbjct: 187 FDNEFGLSQRELEVLHLVAKGLSSKQIAPIVNISARTVEAHRANIKRKT 235


>gi|315505622|ref|YP_004084509.1| transcriptional regulator, luxr family [Micromonospora sp. L5]
 gi|315412241|gb|ADU10358.1| transcriptional regulator, LuxR family [Micromonospora sp. L5]
          Length = 979

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  ++EG T+ EI   L IS  T+  +++ I  K   +TR  A A  +RN
Sbjct: 919 LTAREREVLAAVAEGLTNREIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRN 976


>gi|269862236|ref|XP_002650758.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348]
 gi|220065658|gb|EED43295.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348]
          Length = 119

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ + L  ++ GKT+ EIA  LGIS  TV  +++++++     TR+ A A
Sbjct: 50  LTARQRQVLGLVAAGKTNKEIAKQLGISPFTVRIHVSTLLKSLGVPTRAAAAA 102


>gi|213584966|ref|ZP_03366792.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 49

 Score = 40.0 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 1   AEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 49


>gi|254389093|ref|ZP_05004323.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702810|gb|EDY48622.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 207

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G ++ EIA  L ++  TV  +I  I+ K   + R+ A+ +A  + 
Sbjct: 141 ELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAVIFAYESG 200

Query: 245 IV 246
           +V
Sbjct: 201 LV 202


>gi|223940658|ref|ZP_03632499.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223890670|gb|EEF57190.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 217

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT R+ E L  I+EGK++ E+A +L +S  TV  +   +M +       G + YA+R  
Sbjct: 152 QLTPRQREILQLIAEGKSTKEMAFLLNLSVKTVETHRTQLMDRLGIHDVPGLVRYAMRMG 211

Query: 245 IV 246
           ++
Sbjct: 212 LI 213


>gi|113955465|ref|YP_731403.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113882816|gb|ABI47774.1| possible DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 243

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT +E + L  +  G ++ EIA  L +S +TV ++IAS++RK     R+ A+  A +  
Sbjct: 169 ELTLKEEDVLRGLCRGMSNQEIADSLVVSIDTVKSHIASLLRKLQANNRTHAVVVAFQQG 228

Query: 245 IV 246
           ++
Sbjct: 229 LI 230


>gi|330981978|gb|EGH80081.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 229

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQA 229


>gi|304404571|ref|ZP_07386232.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304346378|gb|EFM12211.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   ++G  + EIA  L IS  TV  + +++M K   KTR   I YA++  +
Sbjct: 154 LSDREKEVLGLTAKGYANKEIAEQLVISVKTVETHKSNVMEKLGLKTRPELIKYAMKKGL 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|298251862|ref|ZP_06975665.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546454|gb|EFH80322.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+ RE++ L  I++G+++ EIA  L IS  TV  ++++I+ K     R+ A  +A
Sbjct: 155 ELSERELDVLRLIADGRSNAEIASRLSISEKTVKGHVSNILSKLYLLDRTQAAVFA 210


>gi|170756196|ref|YP_001781032.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           B1 str. Okra]
 gi|169121408|gb|ACA45244.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           B1 str. Okra]
          Length = 217

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +N
Sbjct: 154 YNLTEREINIIRQIANGFSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213

Query: 244 NIV 246
           NIV
Sbjct: 214 NIV 216


>gi|149370505|ref|ZP_01890194.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149356056|gb|EDM44613.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 214

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE ++ I+E  T+ EIA  L +S++T+ +Y  +++ K   +  +G   YA++   
Sbjct: 152 LTKREVEVISLIAEEFTTQEIADQLFLSKHTIESYRKNLITKLNVRNLAGLTKYAIKKGY 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|13625780|gb|AAK35156.1|AF296284_2 transcriptional activator BviR [Burkholderia cepacia]
 gi|116878313|gb|ABK32010.1| transcriptional regulator [Burkholderia vietnamiensis]
 gi|116878322|gb|ABK32016.1| transcriptional regulator [Burkholderia vietnamiensis]
          Length = 237

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDF------ELTGREVECL 194
           IGL+ +   G  I    L E G   ++ AN    +  +H  +        ELT RE E L
Sbjct: 125 IGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYTVELTVREREAL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIA 238
            W + GKT  EI  I+ +   TV  ++ + MRK   A KT +   A
Sbjct: 185 QWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKA 230


>gi|85703813|ref|ZP_01034916.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
 gi|85671133|gb|EAQ25991.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
          Length = 240

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT ++   L  I EG+ + +IA  L I+  TV  ++ +IMRK   +TR+ A+  A
Sbjct: 173 LTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAVLIA 227


>gi|329936313|ref|ZP_08286078.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304109|gb|EGG47990.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S   H     +LT RE   L  I+EG ++  IA   GIS + V  ++A+++ K     R
Sbjct: 157 RSRGTHRSPRVQLTPREQAVLGLIAEGLSNRMIAHRFGISEHGVKRHVANLLAKFNCSNR 216

Query: 234 SGAIAYAVRNNIV 246
           + A++ A++  ++
Sbjct: 217 AQAVSVALQQGLL 229


>gi|260598854|ref|YP_003211425.1| transcriptional regulator NarP [Cronobacter turicensis z3032]
 gi|260218031|emb|CBA32732.1| Nitrate/nitrite response regulator protein narP [Cronobacter
           turicensis z3032]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LTGRE++ L  ++ G ++ +IA  L IS  TV  +I +++RK   ++R  A
Sbjct: 150 LTGRELDVLQEVARGLSNKQIAATLHISEETVKVHIRNLLRKLNVRSRVAA 200


>gi|254559044|ref|YP_003066139.1| LuxR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254266322|emb|CAX22086.1| putative transcriptional regulator, LuxR family [Methylobacterium
           extorquens DM4]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  I  G   D IA  L +SRNTV N+ A++ RK     R+ A+ +   N 
Sbjct: 420 LTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 478


>gi|188990738|ref|YP_001902748.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732498|emb|CAP50692.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris]
          Length = 272

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G T+  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 210 LTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAV 261


>gi|68536744|ref|YP_251449.1| two-component system response regulator TcsR7 [Corynebacterium
           jeikeium K411]
 gi|68264343|emb|CAI37831.1| two-component system response regulator TcsR7 [Corynebacterium
           jeikeium K411]
          Length = 227

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+ G ++ EIA  L IS  TV  ++  ++ KT ++ R   + +A ++++
Sbjct: 157 LTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHVVLFAFKHHL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|240137035|ref|YP_002961504.1| putative transcriptional regulator, LuxR family [Methylobacterium
           extorquens AM1]
 gi|240007001|gb|ACS38227.1| putative transcriptional regulator, LuxR family [Methylobacterium
           extorquens AM1]
          Length = 486

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  I  G   D IA  L +SRNTV N+ A++ RK     R+ A+ +   N 
Sbjct: 420 LTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 478


>gi|271965229|ref|YP_003339425.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508404|gb|ACZ86682.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 245

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+ ++EG ++ +IA  LGIS +    ++A+I+ K     R+ A A A+   +
Sbjct: 176 LTTRERETLSLMAEGLSNKQIARRLGISEHGAKRHVANILAKLNCSNRTLATAVALNRGL 235

Query: 246 V 246
           +
Sbjct: 236 L 236


>gi|223937482|ref|ZP_03629386.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893833|gb|EEF60290.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           K+ +L+ RE E L  +S+G T+ EIA  L +S NTV  ++  I  K   ++R+ A+
Sbjct: 147 KNEKLSQREEEILQQLSKGYTTKEIAERLSVSVNTVRTHLQHIYEKLHVRSRTEAV 202


>gi|182375406|emb|CAQ15951.1| vR protein [Pseudomonas fuscovaginae]
          Length = 239

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 170 ANMFKSYDVHWGKDF----------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           A+M + Y V  G              LT RE+E L W    KT+ EI  IL ++  TV  
Sbjct: 151 ASMLRDYAVTSGSSLFLHNSSSTAPHLTPRELEILHWAWAEKTTWEIGKILSLAEPTVEF 210

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  +I RK    +R  A+A A++ +++
Sbjct: 211 HFKNIRRKLNVSSRRLAVARAIQLDLM 237


>gi|126732485|ref|ZP_01748284.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
 gi|126707124|gb|EBA06191.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
          Length = 235

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT ++   L  I EGK + +IA  L I+  TV  ++ +IMRK    +R+ A+  A
Sbjct: 160 LTNQQARILHLICEGKLNKQIAFDLSIAETTVKAHVTAIMRKLGVHSRTQAVLVA 214


>gi|2564978|gb|AAB82054.1| hypothetical protein [Rhodobacter capsulatus]
          Length = 250

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LT R+ E L W+ +GKTS +IA ILG++  TV  ++
Sbjct: 184 LTARQREVLEWVGDGKTSADIAQILGLTTATVEKHL 219


>gi|312885328|ref|ZP_07744994.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311302193|gb|EFQ79196.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 251

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 27/42 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE E L  I +GK S EIA +L IS NTVN +  +I+ K
Sbjct: 191 LSTRECEVLRLIDQGKLSKEIADLLSISINTVNRHRQNILEK 232


>gi|302035957|ref|YP_003796279.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300604021|emb|CBK40353.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 226

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +L+ +E   L  ++EG+T+ EIAV L +S  TV NYI+++  K     RS
Sbjct: 156 DLSPQERRLLPLVAEGRTNKEIAVALSLSDKTVKNYISNMYSKLGVTRRS 205


>gi|282861615|ref|ZP_06270679.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282563431|gb|EFB68969.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 236

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++EG  + EIA     S  TV N +  +  +   + R+ A+ YA+RN +
Sbjct: 176 LTTREADMLRLVAEGFDTAEIAQKTSYSERTVKNVLHEVATRLHLRNRAHAVGYALRNGL 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|224283771|ref|ZP_03647093.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 277

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +L+A+Q           G+D EL   +GRE E +  I+ G T  E+A  L IS  TV  +
Sbjct: 192 VLSAFQGAPMDGAGGARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETH 251

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +++++RK     R+    +A    IV
Sbjct: 252 MSNVLRKLQLSNRTELTRWAADRRIV 277


>gi|186687174|ref|YP_001870317.1| two component LuxR family transcriptional regulator [Nostoc
           punctiforme PCC 73102]
 gi|186469477|gb|ACC85276.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+  L  + +G+ + EIA  L +S  TV NY+  I+ K   + R  A  ++ +N
Sbjct: 151 LSKREIGVLKLVGQGRNNQEIAQELHLSEGTVKNYVTQILNKLEMRDRIQAALWSQQN 208


>gi|290957607|ref|YP_003488789.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647133|emb|CBG70232.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 204

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L   ++G T+ E+A  L +S  TV NY+++ ++K A + R+ A+
Sbjct: 144 LTDREREVLRAAADGSTNAELAEALHLSPGTVRNYLSTAIQKLAVRNRTEAV 195


>gi|225025132|ref|ZP_03714324.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC
           23834]
 gi|224942093|gb|EEG23302.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC
           23834]
          Length = 224

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  + ++ +TV  ++ +I+RK    +R  A  YAV++N+
Sbjct: 155 LTSRELEVLRYLAVGYSNKIIAKRMDLAESTVKVHVQNILRKLELGSRVQAAVYAVQHNL 214


>gi|253699116|ref|YP_003020305.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251773966|gb|ACT16547.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 216

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I++GK + EIA   G+S  TV N   SIM+K    + +    YAVR  +
Sbjct: 153 LSLREREILQLIADGKNAKEIAFSFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212


>gi|86359865|ref|YP_471756.1| conjugal transfer transcriptional regulator protein [Rhizobium etli
           CFN 42]
 gi|28453858|gb|AAO43545.1| transcriptional activator protein TraR [Rhizobium etli CFN 42]
 gi|86283967|gb|ABC93029.1| conjugal transfer transcriptional regulator protein, LuxR family
           [Rhizobium etli CFN 42]
          Length = 239

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE+ CL W ++GKT+ E A++ GI+  TV +Y+     K
Sbjct: 179 LSPREMTCLLWATKGKTAPETAMLTGINARTVQHYLDKAREK 220


>gi|73540963|ref|YP_295483.1| LuxR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72118376|gb|AAZ60639.1| transcriptional regulator, LuxR family [Ralstonia eutropha JMP134]
          Length = 181

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELT RE +    + EGKTS +I  +L IS  TV+ Y A +M+K    T
Sbjct: 123 ELTARERDIAAQLVEGKTSKQIGKLLAISPRTVDIYRARLMKKYGAST 170


>gi|56962819|ref|YP_174545.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909057|dbj|BAD63584.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE E +  + +G+ + EIA  L +S  TV NYI+ +  K   + R+    +AV+++I
Sbjct: 151 LAEREKEIIRLVGQGRNNAEIAAELYLSVGTVKNYISQLFIKLGVRDRTQLAIFAVKHDI 210


>gi|332662977|ref|YP_004445765.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331791|gb|AEE48892.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 231

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +A   A  F+  ++    DF  LT RE+E L ++  GK   EIA  + IS   V++++  
Sbjct: 148 IAGKVARFFQEKELKADPDFCNLTARELEVLKYLVNGKRYQEIANAMFISYEGVHSHVKK 207

Query: 224 IMRKTATKTRSGAIAYAV 241
           +  K    ++S AI  A+
Sbjct: 208 VYEKLHVNSKSEAIIKAI 225


>gi|302339532|ref|YP_003804738.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301636717|gb|ADK82144.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM
           11293]
          Length = 521

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ++  L+GRE E    + +GKT+ EI+  L IS +T   +I+ I +K    TRS
Sbjct: 453 RELGLSGREQEIALLMLQGKTNKEISDTLFISMSTTKTHISRIFKKATVSTRS 505


>gi|284054156|ref|ZP_06384366.1| transcriptional regulator, LuxR family protein [Arthrospira
           platensis str. Paraca]
 gi|291570920|dbj|BAI93192.1| LuxR family transcriptional regulator [Arthrospira platensis
           NIES-39]
          Length = 105

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 41/66 (62%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT+T  R   
Sbjct: 3   DSKFKSPVSLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVEL 62

Query: 237 IAYAVR 242
           + ++++
Sbjct: 63  VRWSLQ 68


>gi|158315599|ref|YP_001508107.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158111004|gb|ABW13201.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec]
          Length = 268

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  +SEG  + EI   L  S  TV N +  + R+   + RS A+AYA R+ +
Sbjct: 208 LSERELTVLRLVSEGLDTREIGRRLCYSERTVKNVLQDVTRRFGLRNRSHAVAYAFRHGL 267

Query: 246 V 246
           +
Sbjct: 268 L 268


>gi|57234205|ref|YP_181778.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224653|gb|AAW39710.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 232

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A +A M KS +      +E LT RE E L  +++G T  EIA  L IS  TV  + A++M
Sbjct: 133 AIEAYMEKSAEATSLDPYETLTIREREVLHLVAQGHTCAEIAERLFISPRTVEVHRANMM 192

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK   + ++  + YA++  I+
Sbjct: 193 RKLDLRNQTQLLRYALQRGII 213


>gi|16331237|ref|NP_441965.1| response regulator like-protein [Synechocystis sp. PCC 6803]
 gi|1001413|dbj|BAA10035.1| response regulator like protein [Synechocystis sp. PCC 6803]
          Length = 89

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 39/57 (68%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L  ++ G T+ E++  L IS+ TV+N++++I+ KT T+ R   + +A++
Sbjct: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQ 68


>gi|315647681|ref|ZP_07900782.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315276327|gb|EFU39670.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 201

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L    EG T+ EI+  L ++  TV NY++S ++K    +R  A A A
Sbjct: 141 LSEREIEMLRLTKEGMTTGEISKALFLTTGTVRNYLSSAIQKLEADSRQQAAAIA 195


>gi|288916721|ref|ZP_06411095.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288351795|gb|EFC85998.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 237

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ E+A  L +S  TV  ++A IM K   + R+ A+  A    +
Sbjct: 166 LTPREVEVLQLLATGLSNAELAARLVLSEATVKTHVARIMAKLGLRDRAQAVVVAYETGL 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|269836639|ref|YP_003318867.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785902|gb|ACZ38045.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 237

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++ G ++ EIA  L ++ +TV N ++ +  K   K R+ A  YA+ + +
Sbjct: 173 LTEREIQLLRLVASGMSNKEIAAELSLAESTVKNRLSLLFEKLDVKDRTQAAIYALSHGL 232

Query: 246 V 246
           +
Sbjct: 233 I 233


>gi|213691342|ref|YP_002321928.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522803|gb|ACJ51550.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457415|dbj|BAJ68036.1| putative two-component response regulator [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 245

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K+ D  W     L+ REVE L   SEG  ++EIA  L +S+ T+  Y+   + K   + R
Sbjct: 173 KASDKRWMNGDRLSAREVEILRMYSEGLETEEIARSLSLSKFTIGTYVKRAVAKLHARNR 232

Query: 234 SGAI 237
             AI
Sbjct: 233 IHAI 236


>gi|251799214|ref|YP_003013945.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546840|gb|ACT03859.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 217

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L+  ++G  + E+A +L IS  TV  + +++M K   K+R   I YA++  +
Sbjct: 154 LSEREKEVLSLTAKGYANKEMAEMLVISVKTVETHKSNVMEKLGLKSRPELIKYAMKKGL 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|326330233|ref|ZP_08196544.1| response regulator, two-component system [Nocardioidaceae bacterium
           Broad-1]
 gi|325952046|gb|EGD44075.1| response regulator, two-component system [Nocardioidaceae bacterium
           Broad-1]
          Length = 218

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L  ++ G+T+ EI+  L +S +TV  ++AS+M K  T+ R
Sbjct: 155 LTEREEQVLALVARGRTNAEISTELFVSLSTVKTHVASLMTKLGTRNR 202


>gi|320353750|ref|YP_004195089.1| LuxR family two component transcriptional regulator [Desulfobulbus
           propionicus DSM 2032]
 gi|320122252|gb|ADW17798.1| two component transcriptional regulator, LuxR family [Desulfobulbus
           propionicus DSM 2032]
          Length = 212

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 155 LRDRLWEIGLLAA----YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           L+ R +   LLA     YQ N  +      G    LT R+ E L  I+EG +  E A +L
Sbjct: 119 LKGRTYITPLLAGELLNYQRN--RPSGDQEGGVARLTARQREVLQLIAEGLSVKEAAAVL 176

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           GIS  TV  +  S+M     K+ +  + +AV + I
Sbjct: 177 GISSRTVEFHKYSMMEILGLKSSAELMRFAVEHGI 211


>gi|312196962|ref|YP_004017023.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228298|gb|ADP81153.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 644

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           F LT RE E LT ++EG T+ ++A  L IS  T N ++++I  K     R+
Sbjct: 581 FSLTAREQEVLTLLAEGLTNAQLAAELFISERTANRHVSNIYTKLGVHNRT 631


>gi|290961078|ref|YP_003492260.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260650604|emb|CBG73720.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 163 GLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           GL+A + A    S D   G     +   LTGRE E L  ++ G ++DEIA  L +S  TV
Sbjct: 135 GLIARFLAQPDDSADGDRGAARSERLATLTGREREVLVQVAGGLSNDEIAERLEVSPLTV 194

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++   M K   + R+  + +A  + +V
Sbjct: 195 KTHVNRGMAKLGARDRAQLVVFAYESGLV 223


>gi|260433688|ref|ZP_05787659.1| autoinducer-binding transcriptional regulator, LuxR family
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417516|gb|EEX10775.1| autoinducer-binding transcriptional regulator, LuxR family
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 251

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT+ +IA+++G++  TV  ++       + +T + A+  A   N
Sbjct: 186 LTKRQREALEWVGDGKTTQDIALLMGLTTATVEKHLRLAREALSVETTAQAVLKASLQN 244


>gi|229819242|ref|YP_002880768.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Beutenbergia cavernae DSM 12333]
 gi|229565155|gb|ACQ79006.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Beutenbergia cavernae DSM 12333]
          Length = 895

 Score = 40.0 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           GLL    A+       HW    ELT RE+E L  +    T+ EIA  L +S NTV  +  
Sbjct: 814 GLLGTPAADGAPHRRSHW----ELTDRELEILDGLRSSLTAAEIARSLFVSVNTVKTHQR 869

Query: 223 SIMRKTATKTRSGAIAYA 240
           ++ RK   + R  A+  A
Sbjct: 870 AVYRKLGARNRREAVRLA 887


>gi|225025960|ref|ZP_03715152.1| hypothetical protein EUBHAL_00197 [Eubacterium hallii DSM 3353]
 gi|224956746|gb|EEG37955.1| hypothetical protein EUBHAL_00197 [Eubacterium hallii DSM 3353]
          Length = 215

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT--ATKTRSGAIAYAVR 242
           ELT +E+E L  + EG    EIA  + IS+ TV  +I++I+ KT  A KTR  AIA   +
Sbjct: 142 ELTAKEIEVLRLVCEGLEYSEIAERMHISQRTVKFHISNILSKTGYANKTRL-AIAVTNK 200

Query: 243 NNIV 246
           N I+
Sbjct: 201 NFII 204


>gi|168185605|ref|ZP_02620240.1| response regulator [Clostridium botulinum C str. Eklund]
 gi|169296459|gb|EDS78592.1| response regulator [Clostridium botulinum C str. Eklund]
          Length = 206

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  I EG ++ EI+  + +S  T+ NYI ++++K   + R+    Y ++N
Sbjct: 148 LTEREFEILALIGEGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQLAIYYLKN 205


>gi|150377825|ref|YP_001314420.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150032372|gb|ABR64487.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 243

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE +C   ++ G+ S +IA  LGIS N V  Y+ S   K    T   A+A A
Sbjct: 181 LSRRESQCFQLLATGRISKQIAADLGISENAVKLYLRSARMKLGAATSHQAVARA 235


>gi|110224491|emb|CAJ86500.1| quorum-sensing transcriptional regulator [Serratia marcescens]
          Length = 248

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E + W S GK+  EIA+ILGI   TV  +I + ++K        AI   V 
Sbjct: 179 FSKRENEIIYWASLGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAIRLGVE 235


>gi|45259328|emb|CAE51186.1| RemP protein [Streptomyces resistomycificus]
          Length = 221

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + L+ +++ + +  IA  LGIS  TV NY++ I  K  T+ R     YA R+
Sbjct: 153 LTERERQILSLVADEQATHRIAKRLGISPKTVRNYLSRIYAKLGTQNRVQTALYAKRS 210


>gi|62249397|gb|AAX77678.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 245

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIA+IL I   TV  +I ++++K        AI   + 
Sbjct: 180 FSQRENEILYWASMGKTYQEIALILNIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIE 236


>gi|330822376|ref|YP_004362597.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
 gi|327374213|gb|AEA65567.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
          Length = 237

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + ELT RE E L W + GKT  EI +I+ +   TV  ++ + MRK     ++ A   A 
Sbjct: 173 EVELTCREREALKWSAAGKTYVEIGMIMSVDDRTVKFHLVNTMRKLNAMNKTEAAVKAA 231


>gi|319785654|ref|YP_004145129.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464166|gb|ADV25898.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REV  L  ++ G ++ EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+   I+
Sbjct: 157 REVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 214


>gi|312143766|ref|YP_003995212.1| transcriptional regulator, LuxR family [Halanaerobium sp.
           'sapolanicus']
 gi|311904417|gb|ADQ14858.1| transcriptional regulator, LuxR family [Halanaerobium sp.
           'sapolanicus']
          Length = 255

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 18/101 (17%)

Query: 150 KGRIILRDRLWEIGLLAAYQAN-MFKSYDVHW----------------GKDFELTGREVE 192
           +G   L+D ++ + L++ + AN ++K + +H                 G  + LT RE +
Sbjct: 146 EGNFELKDLMY-LKLISQHSANHLYKLFVIHKLKRENEINKEKLIKKSGNQYNLTDREKQ 204

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            L  I +G ++ EIA  L IS NTV  +I+ +  K    +R
Sbjct: 205 VLKLIIQGMSNQEIAAELFISINTVKKHISHLFNKCKVSSR 245


>gi|310640997|ref|YP_003945755.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245947|gb|ADO55514.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 218

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ELT  EV  +  I +G T D+IAV + +SR +++NY+  I  K    +R+ AI
Sbjct: 151 ELTQTEVFIMERIVQGITYDKIAVEIEVSRRSIDNYLRKIYAKLGVSSRAQAI 203


>gi|260911714|ref|ZP_05918290.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634139|gb|EEX52253.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 318

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 251 LSEREKEVIISLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|217978486|ref|YP_002362633.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217503862|gb|ACK51271.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 209

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT R++  L  +S GK++ EIA  L IS  TV  +I +I RK    TR+ AI
Sbjct: 145 LTPRQLAVLGLLSAGKSNKEIARALSISDLTVKVHITTIFRKLGVATRTQAI 196


>gi|73543101|ref|YP_297621.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72120514|gb|AAZ62777.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 231

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + L  I  G  + EIA  LG+S  TV  +  ++ RK   + R+G + YAV  
Sbjct: 167 LTRRERDILGCIGRGMANKEIATQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVEQ 224


>gi|56479027|ref|YP_160616.1| nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1]
 gi|56315070|emb|CAI09715.1| Nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1]
          Length = 226

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L +++ G+++ EIA  L ++ +TV  ++ +++RK    +R  A  +AV   
Sbjct: 160 KLSPREREILAFLARGQSNKEIARKLELAESTVKIHVQNVLRKLNLTSRVQAAVFAVEQG 219

Query: 245 IV 246
           IV
Sbjct: 220 IV 221


>gi|331700269|ref|YP_004336508.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954958|gb|AEA28655.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 201

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +D  LT RE+E L  + +  T+++IA  + +S  TV NY++S M+K    +RS A   A
Sbjct: 137 EDCPLTDRELEVLRNVDDSGTANDIARRVHLSPGTVRNYLSSAMQKLGAGSRSEAARLA 195


>gi|296269819|ref|YP_003652451.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296092606|gb|ADG88558.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 226

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    +
Sbjct: 160 LTERELEVLRLIAKGMSNAEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|290959189|ref|YP_003490371.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648715|emb|CBG71828.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 200

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S + K   + R 
Sbjct: 129 AADAISSGDSPLTAREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGVENRH 188

Query: 235 GAIAYA 240
            A+  A
Sbjct: 189 AAVRLA 194


>gi|317049512|ref|YP_004117160.1| LuxR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951129|gb|ADU70604.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 262

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W S GKT  E+A +L ++ +T+  ++   ++K   K    AI+ A   N+
Sbjct: 187 LSTREAEILYWSSTGKTYAEVAEMLQLTVSTIKFHMGKTVKKLGVKNAKHAISLASELNL 246

Query: 246 V 246
           +
Sbjct: 247 I 247


>gi|225352276|ref|ZP_03743299.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157523|gb|EEG70862.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 223

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           RE E +   S G TS EI + LGI   TV  YI  +M+K   K R+ A+
Sbjct: 164 REREVMGLCSLGFTSKEIGIKLGIGEPTVKTYIRRVMKKLGAKNRTQAV 212


>gi|167567184|ref|ZP_02360100.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
 gi|167572592|ref|ZP_02365466.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 212

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    ++ G T  EIA  LGIS  TV  Y A ++ K      S  + YAV + I
Sbjct: 149 LSKREFEVFRHLASGDTPAEIAQALGISAKTVRIYKAHVLDKLELPNESALVRYAVAHRI 208


>gi|114561787|ref|YP_749300.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333080|gb|ABI70462.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 210

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           T +E + L+ I  G T++E+A  L IS NTV  ++ +I +KT  K R    A+A
Sbjct: 155 TKKEQQVLSLILHGLTNEEMAKELNISVNTVKMHVQNIYKKTKIKNRGQLFAFA 208


>gi|269148498|gb|ACZ28637.1| two component transcriptional regulator LuxR family [uncultured
           organism]
          Length = 203

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E +  I++GK++ EIA +L +S  TV  + A +M K   K+ +  +  A+
Sbjct: 143 LTPREKEVMQHIADGKSNKEIAALLELSHRTVEVHRARLMEKMEVKSLAELVPMAL 198


>gi|304398340|ref|ZP_07380214.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304354206|gb|EFM18579.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 209

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE + L  ++ G ++ EIA IL IS  TV  +I +++RK   ++R  A
Sbjct: 150 LTDRECDVLQEVARGLSNKEIAAILHISEETVKVHIRNLLRKLDVRSRVAA 200


>gi|71733308|ref|YP_273861.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71553861|gb|AAZ33072.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320327729|gb|EFW83737.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 233

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   
Sbjct: 172 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINIG 231

Query: 245 IV 246
           +V
Sbjct: 232 MV 233


>gi|326387030|ref|ZP_08208640.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208211|gb|EGD59018.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 306

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           LT RE E L WIS GK++ +I+ +L IS  TV  ++  I  K   +T
Sbjct: 246 LTEREAEVLLWISYGKSNADISDVLAISPRTVQKHLERIYEKLGVET 292


>gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 242

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 171 NMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +M    D H  +  +     T RE   L  ++EG  + EIA  L  S   V  Y++ +  
Sbjct: 162 SMLSHGDKHHSRKDDSIPNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFI 221

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           KT T +R+  + YA+ N++V
Sbjct: 222 KTGTSSRTELVRYALENHLV 241


>gi|73541423|ref|YP_295943.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72118836|gb|AAZ61099.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 257

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I  G T+ EIA  L +S  T+ +++ +I +K   KTR+ A   A R  +
Sbjct: 196 LSTRELEILRCIDRGATNREIAAALSLSTLTIESHVKNIHKKLGVKTRTQATFEARRYGL 255

Query: 246 V 246
           +
Sbjct: 256 L 256


>gi|330470082|ref|YP_004407825.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328813053|gb|AEB47225.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 225

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG+++ EI   L +S +TV  +   + RK   + R+ A+A   R  +
Sbjct: 164 LTERELQVLLGMAEGRSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGL 223

Query: 246 V 246
           V
Sbjct: 224 V 224


>gi|325916868|ref|ZP_08179116.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536913|gb|EGD08661.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 235

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L+ +  G T+  +A  LGIS  TV  ++  I++K   K R+ A  YAV+  +
Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVQAGL 233

Query: 246 V 246
            
Sbjct: 234 A 234


>gi|298251437|ref|ZP_06975240.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
 gi|297546029|gb|EFH79897.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
          Length = 1003

 Score = 39.7 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 30/62 (48%)

Query: 184  FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            F LT RE E L  ++ G     IA  L +SR TVN ++ SI  K    TR+ A   A   
Sbjct: 941  FHLTARECEVLRLLALGHPDARIAQELVLSRRTVNTHLRSIYAKLGVSTRTAAARVAFEQ 1000

Query: 244  NI 245
             +
Sbjct: 1001 QL 1002


>gi|258592851|emb|CBE69160.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 160

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I++G +  +IA  L  S  T+ N+ A I +K   + R+G + +A RN +
Sbjct: 98  LTPREQQILRLIAQGFSDKQIARTLQRSVRTIENHAARIRQKLHIENRTGLVRFAFRNRL 157

Query: 246 V 246
           +
Sbjct: 158 I 158


>gi|332529938|ref|ZP_08405889.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332040635|gb|EGI77010.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE +    + +G++  EI   LG++ NTV+ Y A I+ KT TK       YA R+
Sbjct: 151 LSHREHQVFRLLIQGRSVSEIGAQLGLAPNTVSTYRARILEKTGTKNDVELALYAERD 208


>gi|303240659|ref|ZP_07327173.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302591727|gb|EFL61461.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 223

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 13/95 (13%)

Query: 165 LAAYQANMF---------KSYDVHWGK----DFELTGREVECLTWISEGKTSDEIAVILG 211
           L  +Q+N+F         K Y    G+     F LT +E++ +  I+EGK + EIA  + 
Sbjct: 129 LNVFQSNIFENVRKQYNSKKYLEDTGEKEQNSFGLTQKELQLIRLITEGKKNKEIAEQIF 188

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  ++ N  + I++K     R+    +AV++N+V
Sbjct: 189 VTEGSIKNMSSKILKKLNLADRTQLAIFAVKSNLV 223


>gi|288927583|ref|ZP_06421430.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330417|gb|EFC69001.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 318

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 251 LSEREKEVIISLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|256380225|ref|YP_003103885.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924528|gb|ACU40039.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 215

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++ E+A  L ++  TV  +++ ++ K   + R+ A+  A  + +
Sbjct: 152 LTGRETEVLLMVARGLSNAEVARGLNVAEQTVKTHVSRVLTKLGLRDRAQAVIAAYESGL 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|196229129|ref|ZP_03127994.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226361|gb|EDY20866.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  +++G    EI  I+GIS +TVN++   I  K   ++R  A+A
Sbjct: 154 LTDREREVLDLLAQGYLYKEIGEIMGISTHTVNSHNRHIYEKLQVRSRGQAVA 206


>gi|152964143|ref|YP_001359927.1| response regulator receiver protein [Kineococcus radiotolerans
           SRS30216]
 gi|151358660|gb|ABS01663.1| response regulator receiver protein [Kineococcus radiotolerans
           SRS30216]
          Length = 128

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++E      +A  LG++ NTV  ++AS+ RK   ++ + A A A R+ +
Sbjct: 67  LTAREREVLQMVAEACPGALVAERLGLAPNTVAQHLASVRRKYGVRSSATAAALARRDGL 126

Query: 246 V 246
           +
Sbjct: 127 I 127


>gi|332668435|ref|YP_004451223.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332337249|gb|AEE54350.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 207

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG T+ EIA  L IS  TV+++  +++ K A K  +  I  A+ + +
Sbjct: 145 LTSREKEVLALIAEGLTNKEIADHLFISPLTVDSHRKNLLAKFAVKNTASLIKLAIEHGV 204

Query: 246 V 246
           +
Sbjct: 205 I 205


>gi|284045220|ref|YP_003395560.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949441|gb|ADB52185.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 223

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ++ G+T+ EIA  L +S  TV  ++  I+ K A + R  A+  A +  
Sbjct: 160 ELTAREHEVLLELAAGRTNAEIAERLVLSEATVKTHVGRILGKLALRDRVQAVILAYQIG 219

Query: 245 IV 246
           +V
Sbjct: 220 LV 221


>gi|253998442|ref|YP_003050505.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200518|ref|YP_004039176.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985121|gb|ACT49978.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312439834|gb|ADQ83940.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E     +EGK ++EIA +L IS+ TV NY   + +K         + +A+++ 
Sbjct: 151 QLSPREFEVFRLFAEGKNAEEIAEVLKISQKTVANYHTLVKQKLGLSNPVEMVRFAIKHG 210

Query: 245 IV 246
           ++
Sbjct: 211 LI 212


>gi|238059423|ref|ZP_04604132.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237881234|gb|EEP70062.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 970

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  ++EG T+ EI   L IS  T+  +++ I  K   +TR  A A  +RN
Sbjct: 910 LTTREREVLAAVAEGLTNKEIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRN 967


>gi|210634369|ref|ZP_03298095.1| hypothetical protein COLSTE_02017 [Collinsella stercoris DSM 13279]
 gi|210158848|gb|EEA89819.1| hypothetical protein COLSTE_02017 [Collinsella stercoris DSM 13279]
          Length = 307

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ELT RE E +  ++EG  + EI+    IS  TV N I+S+++KT  K R+
Sbjct: 246 ELTDREYEVVRLVAEGLDNHEISAAAFISEGTVRNRISSVLQKTGYKNRT 295


>gi|209526078|ref|ZP_03274610.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328]
 gi|209493466|gb|EDZ93789.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328]
          Length = 105

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 41/66 (62%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT+T  R   
Sbjct: 3   DSKFKSPVSLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVEL 62

Query: 237 IAYAVR 242
           + ++++
Sbjct: 63  VRWSLQ 68


>gi|157370683|ref|YP_001478672.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157322447|gb|ABV41544.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 497

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE + L  I EG    +IA  L ++ NTV N++A +  K    +RS AI +A
Sbjct: 427 DLTARERDVLGLICEGLPDKKIATRLNLAPNTVRNHVAMVYSKLDVHSRSEAIVWA 482


>gi|32441931|gb|AAO38761.1| SwrR [Serratia liquefaciens]
          Length = 248

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E + W S GK+  EIA+ILGI   TV  +I + ++K        AI   V 
Sbjct: 179 FSKRENEIIYWASLGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAIRLGVE 235


>gi|15894152|ref|NP_347501.1| two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|15023760|gb|AAK78841.1|AE007602_2 Two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|325508280|gb|ADZ19916.1| Two-component response regulator [Clostridium acetobutylicum EA
           2018]
          Length = 218

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 21/114 (18%)

Query: 154 ILRDRLWEI---GLLAAYQANMFKSYDV---------HWGKD---------FELTGREVE 192
           IL+D  +E+   G+ AA++ N+  + +V          + K+         ++L+ +E+ 
Sbjct: 104 ILKDSDYELIYEGIKAAFKGNVVINPEVASKILSENGEYNKEQALEEVKTKYDLSDKEIN 163

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  I+ G ++ EIA  L +S  T+ N I+ I  K   + R+    +A +NNIV
Sbjct: 164 IVREIASGLSNKEIAEKLFLSEGTIKNNISIIFSKLNLRDRTQVTIFAFKNNIV 217


>gi|1706700|sp|P54293|ESAR_ERWST RecName: Full=Transcriptional activator protein esaR
 gi|476612|gb|AAA82097.1| esaR [Pantoea stewartii subsp. stewartii DC283]
          Length = 249

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  EIA I GIS +TV  +I +++ K        AI   V  ++
Sbjct: 181 FSSRENEVLYWASMGKTYAEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDL 240

Query: 246 V 246
           +
Sbjct: 241 I 241


>gi|332533470|ref|ZP_08409333.1| nitrate/nitrite response regulator protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037017|gb|EGI73475.1| nitrate/nitrite response regulator protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 218

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 152 RIILRDRLW---EIGLLAAYQANMFKSYDVH--WGKDFE---LTGREVECLTWISEGKTS 203
           R++L D+LW   +I   A  +   F    +H     D E   LT RE   ++ +S+G  +
Sbjct: 113 RLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSKGSKN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L IS +TV  ++ S  RKT  + R   +++A +N
Sbjct: 173 KEIAEDLSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212


>gi|256783882|ref|ZP_05522313.1| two-component regulator [Streptomyces lividans TK24]
 gi|289767766|ref|ZP_06527144.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289697965|gb|EFD65394.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S +TV  ++++++ K   + R  A+  A    +
Sbjct: 157 LTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|307150964|ref|YP_003886348.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306981192|gb|ADN13073.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822]
          Length = 90

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   + +A++
Sbjct: 12  LSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELVRWALQ 68


>gi|169350169|ref|ZP_02867107.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552]
 gi|169292952|gb|EDS75085.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552]
          Length = 67

 Score = 39.7 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E  T +    ++ EIA IL IS  TV N+I+++++K    +R  A+   VR
Sbjct: 5   LTPREREVFTLLINNHSTKEIAQILKISEKTVRNHISNVIQKLGVDSRIQAVFELVR 61


>gi|114217274|dbj|BAF31200.1| AHL-dependent transcriptional regulator [Serratia marcescens]
 gi|172044716|gb|ACB69923.1| SpnR [Serratia marcescens]
          Length = 247

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 29/56 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            T RE E L W S GKT  EIA I GIS +TV  ++ +I+ K        AI   V
Sbjct: 181 FTPRENEVLYWSSMGKTYGEIAAIAGISISTVKFHMGNIVSKLGVSNARQAIRLGV 236


>gi|21224963|ref|NP_630742.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3334798|emb|CAA19946.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
          Length = 222

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S +TV  ++++++ K   + R  A+  A    +
Sbjct: 157 LTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|330899224|gb|EGH30643.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330980772|gb|EGH78875.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 87

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R  
Sbjct: 23  QLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82

Query: 245 IV 246
           ++
Sbjct: 83  VI 84


>gi|317490641|ref|ZP_07949111.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325831510|ref|ZP_08164764.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1]
 gi|316910265|gb|EFV31904.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325486764|gb|EGC89212.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  +++G T+ EI+  + +S  TV  + + I +K   KTR+  + YA+R+ 
Sbjct: 151 QLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHK 210

Query: 245 IV 246
           ++
Sbjct: 211 LL 212


>gi|311897337|dbj|BAJ29745.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE++ L  + EG ++ EIA  L +   TV ++I++I+ K     R  A   A R  +
Sbjct: 155 LTGRELDVLALLGEGLSNAEIADRLFLGTGTVKDHISAILGKLGAANRVQAAVIAHRAGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|303237703|ref|ZP_07324263.1| hemerythrin HHE cation binding domain protein [Prevotella disiens
           FB035-09AN]
 gi|302482155|gb|EFL45190.1| hemerythrin HHE cation binding domain protein [Prevotella disiens
           FB035-09AN]
          Length = 313

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 246 LSDREKDVIISVVQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 305

Query: 246 V 246
           V
Sbjct: 306 V 306


>gi|239930320|ref|ZP_04687273.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438665|ref|ZP_06578055.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341560|gb|EFE68516.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 206

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S + K   + R 
Sbjct: 135 AADAIAAGDSPLTAREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRH 194

Query: 235 GAIAYA 240
            A+  A
Sbjct: 195 TAVRLA 200


>gi|163849813|ref|YP_001637856.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661418|gb|ABY28785.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 278

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  I  G   D IA  L +SRNTV N+ A++ RK     R+ A+ +   N 
Sbjct: 212 LTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 270


>gi|307331258|ref|ZP_07610381.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883070|gb|EFN14133.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 206

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G +  EIA   G+S+ TV NY+++   K   + R 
Sbjct: 135 AADAISAGDSPLTAREAELLELAADGASIAEIAQRAGLSQGTVRNYLSAAAAKLGAENRH 194

Query: 235 GA 236
            A
Sbjct: 195 AA 196


>gi|282856682|ref|ZP_06265948.1| two-component response regulator [Pyramidobacter piscolens W5455]
 gi|282585447|gb|EFB90749.1| two-component response regulator [Pyramidobacter piscolens W5455]
          Length = 203

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 27/126 (21%)

Query: 148 FPKGRIILRDRLWEIGLL-----AAYQANMFKSYDVHW----------GKDF-------- 184
           FP+ R+++   L E+  +     A   + ++K  DV+           GK          
Sbjct: 74  FPRVRVVMMTGLPEVTFVERAREAGADSFVYKDLDVNGLAGVIRDTCAGKSVYPGRREEV 133

Query: 185 ----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT RE E LT I +G +  EIA  L I+ N+V  + ++I+ KT  ++ +    +A
Sbjct: 134 LNFGELTRREREVLTLICDGLSRREIAERLNITINSVKTHFSNILSKTGYESVAKLAIFA 193

Query: 241 VRNNIV 246
           V N  +
Sbjct: 194 VSNGFI 199


>gi|167622115|ref|YP_001672409.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167352137|gb|ABZ74750.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 213

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ +  I+ GK++ EIA  LGI+ +TV  ++ ++++K   K+R   + +AV N 
Sbjct: 151 ELTQRELQIVKLIASGKSNKEIANKLGITDSTVKVHVKNLLKKLTLKSRVEVVLWAVENK 210

Query: 245 I 245
           I
Sbjct: 211 I 211


>gi|162453707|ref|YP_001616074.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161164289|emb|CAN95594.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 242

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L  ++ G+T+ EIA  L IS +TV  ++AS+M K   + R
Sbjct: 180 LTAREEEVLLIVARGRTNAEIADELHISLSTVKAHVASLMTKLGARNR 227


>gi|146343765|ref|YP_001208813.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146196571|emb|CAL80598.1| putative Transcriptional regulatory protein, luxR family
           [Bradyrhizobium sp. ORS278]
          Length = 199

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            G    LT RE E L  ISEG ++ E A+ +GIS  T  ++ A  MRK   +
Sbjct: 134 GGSSKSLTPREREVLKLISEGHSNKEGALRMGISPRTFESHRAEAMRKLGAR 185


>gi|282861209|ref|ZP_06270274.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563867|gb|EFB69404.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +++G ++ EIA +L IS  TV  ++  +  K   K R+ A+A      I
Sbjct: 157 LSTREREVLALVAKGTSNREIAAVLFISEATVKTHLTHVFAKLGAKDRAAAVALGYERGI 216

Query: 246 V 246
           +
Sbjct: 217 L 217


>gi|166031115|ref|ZP_02233944.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC
           27755]
 gi|166028962|gb|EDR47719.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC
           27755]
          Length = 207

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 36/60 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +E+T +E   +  +++GK++ EIA  + +S  T+ NYI+ I+ K   + R+    + +RN
Sbjct: 146 YEITEKERAVMKLVADGKSNKEIAGEMFLSEGTIRNYISGILDKLNLRDRTQLAVFYLRN 205


>gi|33865102|ref|NP_896661.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33638786|emb|CAE07081.1| possible two-component response regulator [Synechococcus sp. WH
           8102]
          Length = 234

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  I  G ++ EIA  L +S  TV + + +++ K   + RS A+  A RN+
Sbjct: 162 ELTVREEDVLRGICRGLSNQEIADQLNLSIETVKHSVTAVLSKLDARDRSQAMLIAFRND 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|302188606|ref|ZP_07265279.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
          Length = 89

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE E L  + +G T+ EIA  L IS  TV ++++S++RK   KTR   +A  V
Sbjct: 10  VTTREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVKTRVELMARCV 65


>gi|256823996|ref|YP_003147956.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687389|gb|ACV05191.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 201

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 170 ANMFKSYDVHWGKDFELTG------REVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A   ++ D     +  L G      RE + L   ++G+   EIA  L +S  TV N+++S
Sbjct: 119 AAGLRTVDADLAAESALAGPNPLSPRETDVLRLAADGQGVAEIAGALFLSPGTVRNHLSS 178

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
            + KT  +T +GA A   R+N
Sbjct: 179 AIGKTGARTSAGA-ATTARDN 198


>gi|256376071|ref|YP_003099731.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920374|gb|ACU35885.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 201

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L    +G T  ++A  +G+S  TV N++++ + KT  +TR+ A+  A
Sbjct: 141 LTARERDVLALARDGGTVADLAKGVGLSEGTVRNHLSAAIGKTGARTRAEAVRIA 195


>gi|134099697|ref|YP_001105358.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|291008299|ref|ZP_06566272.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912320|emb|CAM02433.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 946

 Score = 39.7 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 149 PKGRIILRDRLWEIGLL--AAYQANMFKSYDV-------HWGKDFELTGREVECLTWISE 199
           P G   L DR  E+G    AA   ++ +S+           G   EL+ RE +    ++ 
Sbjct: 847 PDGMGELADRYAELGATRDAARCRHLLRSHGTTTPSRRGRRGYGNELSPREQDVARLLAG 906

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G+T+ EIA  L +SR TV  ++A ++RK    +R+
Sbjct: 907 GRTNREIAEALFLSRRTVEQHVARVLRKLGAASRT 941


>gi|329851875|ref|ZP_08266556.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328839724|gb|EGF89297.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 212

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           + F+S  V    +  LT RE++ L  IS+G  + + A  LG++ +TV ++I SI  K   
Sbjct: 135 DHFRSTAVAHQPEATLTTRELDVLGLISKGLRNADAAHALGLAESTVASHIKSIYSKLGI 194

Query: 231 KTRSGAIAYAVRNNI 245
            TR+ A   A R  +
Sbjct: 195 TTRAEAAIRAQRMGL 209


>gi|312882580|ref|ZP_07742320.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369740|gb|EFP97252.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 268

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+ CL +  EGK + EI+ I G S  TVN Y+ S+  K   +    A+  A+++ ++
Sbjct: 210 HELLCLFFFKEGKEAKEISQITGYSVATVNTYLRSVREKMNVEKTYQAVIKAIQDGLI 267


>gi|298486193|ref|ZP_07004256.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159200|gb|EFI00258.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|306431677|emb|CBM41481.1| N-acyl homoserine lactone sensor/regulator [Pseudomonas savastanoi
           pv. savastanoi]
          Length = 247

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   
Sbjct: 186 KLSTRETGVLKWMAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMG 245

Query: 245 IV 246
           +V
Sbjct: 246 MV 247


>gi|325673304|ref|ZP_08152996.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325555894|gb|EGD25564.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 878

 Score = 39.7 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE++ L  +   +T++EIA  L +S NTV  ++  I RK    TR  A+  A
Sbjct: 817 KLTRRELQLLAELPTWRTAEEIAADLCVSVNTVKTHLRGIYRKLGVTTRRDAVTAA 872


>gi|295697043|ref|YP_003590281.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
 gi|295412645|gb|ADG07137.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
          Length = 320

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L  +SE K+  +IA  L IS  TV  ++A +MRKT   +R     +A ++ +
Sbjct: 238 FTPREFEVLCLLSENKSYRQIAQHLQISEGTVRAHVAGMMRKTQVHSREELTVWARKHCL 297

Query: 246 V 246
           +
Sbjct: 298 I 298


>gi|257791491|ref|YP_003182097.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|257475388|gb|ACV55708.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  +++G T+ EI+  + +S  TV  + + I +K   KTR+  + YA+R+ 
Sbjct: 151 QLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHK 210

Query: 245 IV 246
           ++
Sbjct: 211 LL 212


>gi|289577641|ref|YP_003476268.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus
           Ab9]
 gi|289527354|gb|ADD01706.1| transcriptional regulator, LuxR family [Thermoanaerobacter italicus
           Ab9]
          Length = 257

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 14/145 (9%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           +P E +C +F      I  P  +DN+      D++ I   +            + +  I 
Sbjct: 124 KPEEHYCDIFKQWY-CIATPFHIDNQIVGY-LDISIIEHNMA----------DEMMGFID 171

Query: 164 LLAAYQANMFK-SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LL    AN +K   D+   +D E LT +++E +   ++G T   I++ LG+   TV  + 
Sbjct: 172 LLVYKIANEYKREMDLESQEDLEKLTDKQIEIIKKCAKGYTELAISMELGLKPATVKYHK 231

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             I++K   K    AIA A++ N++
Sbjct: 232 KEIIKKLRVKNLQQAIAKAIKLNLI 256


>gi|254819243|ref|ZP_05224244.1| response regulator receiver domain-containing protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 211

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L ++++G ++ +IA+ L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 148 LTERETEVLRYVAKGLSAKQIAMKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 207


>gi|166713294|ref|ZP_02244501.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 826

 Score = 39.7 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 36/58 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R  A+A AV+  ++
Sbjct: 755 RELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSRESALAQAVQRGLL 812


>gi|312137920|ref|YP_004005256.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311887259|emb|CBH46568.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 878

 Score = 39.7 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE++ L  +   +T++EIA  L +S NTV  ++  I RK    TR  A+  A
Sbjct: 817 KLTRRELQLLAELPTWRTAEEIAADLCVSVNTVKTHLRGIYRKLGVTTRRDAVTAA 872


>gi|302874384|ref|YP_003843017.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307691015|ref|ZP_07633461.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302577241|gb|ADL51253.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 204

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + LT I +G +++EIA +L IS +TV  ++++I+ K     R+  +A+ V N 
Sbjct: 143 QLTEREKDVLTEIRKGLSNEEIAKVLYISEHTVKKHVSNILSKFNLSNRT-QVAFMVNNK 201

Query: 245 I 245
           +
Sbjct: 202 L 202


>gi|166710760|ref|ZP_02241967.1| putative transcriptional regulator, LuxR family protein
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 235

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L+ +  G T+  +A  LGI+  TV  ++  I++K   K R+ A  YAV++ +
Sbjct: 174 LSKREKQVLSLLPRGLTNASLAAELGIAPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233

Query: 246 V 246
            
Sbjct: 234 A 234


>gi|86142105|ref|ZP_01060629.1| two-component response regulator [Leeuwenhoekiella blandensis
           MED217]
 gi|85831668|gb|EAQ50124.1| two-component response regulator [Leeuwenhoekiella blandensis
           MED217]
          Length = 216

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  L+ REVE L  +S+G +  +IA  L +S +TV  +I +I +K    ++  A+  A 
Sbjct: 152 EEISLSSREVEVLEQLSKGLSYTKIAENLFLSPSTVRKHIENIYKKLQVHSKIEAVEKAR 211

Query: 242 RNNIV 246
           +NNI+
Sbjct: 212 QNNII 216


>gi|86138888|ref|ZP_01057460.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. MED193]
 gi|85824535|gb|EAQ44738.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. MED193]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT+ +IA+++G++  T+  ++       + +T + A+  A   N
Sbjct: 186 LTNRQREALEWVGDGKTTQDIALLMGLTPATIEKHLRLARSSLSVETTAQAVLKAALQN 244


>gi|319644893|ref|ZP_07999126.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2]
 gi|317392702|gb|EFV73496.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L +I  G  + EIA  L IS  TV N+  ++M+K    ++   I YA++N
Sbjct: 150 LTVREKEILRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAIKN 207


>gi|262200121|ref|YP_003271329.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262083468|gb|ACY19436.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 267

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE + L   + G ++  IA  LGI+ +T   Y+ S MRK    TR  A+  A R  +
Sbjct: 206 LTGREHDVLALAALGHSNARIADQLGITVHTTKGYLKSAMRKLGATTRLEAVITARRAGL 265

Query: 246 V 246
           +
Sbjct: 266 M 266


>gi|320006745|gb|ADW01595.1| regulatory protein LuxR [Streptomyces flavogriseus ATCC 33331]
          Length = 110

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           L+GRE E L  I+ G T  EIA  + +S +TV+ YI  I  KT ++ R
Sbjct: 28  LSGREREVLAHIARGATYREIARRMDVSLHTVDTYIRRIRAKTGSRNR 75


>gi|269839567|ref|YP_003324259.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791297|gb|ACZ43437.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 218

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 186 LTGREVECLTWISEGKTSD-EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  + +G TS+ E+A  L +S NTV  ++ +I+ K   + R+  +AYA+++ 
Sbjct: 149 LTEREQEILELLVQGVTSNKELAERLILSENTVKYHLRNILDKLHLQNRTQVVAYALQHG 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|163731572|ref|ZP_02139019.1| transcription regulatory protein degU, putative [Roseobacter
           litoralis Och 149]
 gi|161395026|gb|EDQ19348.1| transcription regulatory protein degU, putative [Roseobacter
           litoralis Och 149]
          Length = 218

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 151 LTGREQTILLQLAQGKSNRDVATALDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 210

Query: 246 V 246
           +
Sbjct: 211 L 211


>gi|190404427|ref|YP_001961058.1| rcorf83 [Agrobacterium rhizogenes]
 gi|158322223|gb|ABW33640.1| rcorf83 [Agrobacterium rhizogenes]
          Length = 224

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE  CL W ++GK++ E A++ GI+  TV +Y+     K    T    +A A  + +
Sbjct: 164 LSPREAMCLMWAAKGKSAPETAMLTGINARTVQHYLDKAREKLDAATVPHLVAIAKDHGL 223

Query: 246 V 246
           V
Sbjct: 224 V 224


>gi|197116849|ref|YP_002137276.1| LuxR family helix-turn-helix transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086209|gb|ACH37480.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter bemidjiensis Bem]
          Length = 216

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I++G+ + EIA   G+S  TV N   SIM+K    + +    YAVR  +
Sbjct: 153 LSQREREILQLIADGRNAKEIAFSFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212


>gi|30315261|gb|AAP30848.1|AF503776_1 HalR [Hafnia alvei]
          Length = 246

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 28/57 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            T RE E L W S G T  EIA I+GIS  TV  ++ +++ K        AI   V 
Sbjct: 181 FTAREHEVLYWASMGNTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVE 237


>gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. NATL2A]
 gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. NATL2A]
          Length = 242

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 167 AYQANMFKSYDVHWGKDFE--------LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           A Q    KS   H  K+           T RE   L  ++EG  + EIA  L  S   V 
Sbjct: 154 AKQITEIKSMLSHGDKNHSRKDDSIPNFTPREASVLQLVAEGLMNKEIARQLETSIRNVE 213

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            Y++ +  KT T +R+  + YA+ N++V
Sbjct: 214 KYVSRLFIKTGTSSRTELVRYALENHLV 241


>gi|78223365|ref|YP_385112.1| two component LuxR family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78194620|gb|ABB32387.1| two component transcriptional regulator, LuxR family [Geobacter
           metallireducens GS-15]
          Length = 210

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 179 HWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           H  +D    L+ RE + ++ I+ GKT  +IA  L +S  TV+ Y A I+RK   K  +  
Sbjct: 141 HNQQDLLQSLSNREYQVMSMIASGKTVGKIATELSLSVKTVSTYRAHILRKLNMKNNAEL 200

Query: 237 IAYAVRNNIV 246
             + + N ++
Sbjct: 201 TRFVIENKLI 210


>gi|21229587|ref|NP_635504.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766463|ref|YP_241225.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21111059|gb|AAM39428.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571795|gb|AAY47205.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 210

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           REV  L  ++ G ++ EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+
Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILDKLGTRDRTRAVLKAI 205


>gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
 gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
          Length = 252

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N +
Sbjct: 191 FTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFTKTGTTSRTELVRYALENGL 250

Query: 246 V 246
           V
Sbjct: 251 V 251


>gi|330957615|gb|EGH57875.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 82

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE E L  + +G T+ EIA  L IS  TV ++++S++RK   +TR+  +A  V
Sbjct: 3   VTMREQEVLDLLLQGFTNKEIARQLSISGYTVRDHVSSLLRKNQVRTRAELMARCV 58


>gi|330468504|ref|YP_004406247.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328811475|gb|AEB45647.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 192

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +   LT RE + L   + G    E+A  LG++  TV N++  I RK   +TR  A+  A
Sbjct: 128 RGSPLTSRETQILDLTAAGAPVAEVARALGLAPGTVRNHLGRITRKVGARTRVEAVRVA 186


>gi|307322284|ref|ZP_07601649.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306892066|gb|EFN22887.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
          Length = 255

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 163 GLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           GL+A  QA++        + +G+D  LT RE + L  I  G  +  IA  LG+S NTV  
Sbjct: 161 GLVAQKQASLEDIDLERKIDFGQDL-LTMRETQILDLICVGMQNKIIADRLGLSENTVKV 219

Query: 220 YIASIMRKTATKTRSGAIAYAVRNN 244
           ++ +I +K   + R+ A A   R++
Sbjct: 220 HVRNIYKKMNVRNRTEAAARYFRSD 244


>gi|300698252|ref|YP_003748913.1| LuxR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074976|emb|CBJ54545.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CFBP2957]
          Length = 252

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E    I +G+++ EIA ++  S +TV +Y++SIM KT  + R
Sbjct: 183 LTEREREVALLIGQGRSNAEIAQVVCKSESTVKHYLSSIMDKTGCENR 230


>gi|292491953|ref|YP_003527392.1| LuxR family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580548|gb|ADE15005.1| regulatory protein LuxR [Nitrosococcus halophilus Nc4]
          Length = 239

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +LT RE + +  + EGK S  IA  LGIS  TV ++ A +M K  T+ R+  I
Sbjct: 167 QLTPREQQVMEGLIEGKLSRIIASELGISTKTVEHHRAQVMTKLQTRNRAELI 219


>gi|269125139|ref|YP_003298509.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268310097|gb|ACY96471.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 266

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE E L+  ++G  + EIA  +G++  TV  Y+ S+MRK   + R  A+
Sbjct: 205 LSRREHEALSHAAQGLPNAEIAARMGLTPGTVKAYLRSVMRKLGCRNRMEAV 256


>gi|229589739|ref|YP_002871858.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361605|emb|CAY48483.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 218

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ + L  I+ GKT+ EIA  LGIS  TV  +++++ +     TR+ A A
Sbjct: 149 LTARQKQVLGLIAAGKTNKEIARQLGISPFTVRIHVSTLFKTLGVPTRAAAAA 201


>gi|229134173|ref|ZP_04262991.1| Response regulator [Bacillus cereus BDRD-ST196]
 gi|228649281|gb|EEL05298.1| Response regulator [Bacillus cereus BDRD-ST196]
          Length = 597

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 32/63 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  +S G     IAV L +S  T+ NY +++  K     R  AI  A   
Sbjct: 535 YGLTKREMEILEHLSNGLRYKSIAVKLLLSEGTIRNYCSNLYSKLGVNNREEAIKMARTE 594

Query: 244 NIV 246
           NI+
Sbjct: 595 NIL 597


>gi|111221107|ref|YP_711901.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111148639|emb|CAJ60313.1| Putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 340

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  ++ G T+ +IA  L +S  TV +++  I+RK     RS A+A
Sbjct: 275 LTPREREVLRILAGGATNAQIAAALTVSETTVKSHVKHILRKLRATNRSEAVA 327


>gi|54025254|ref|YP_119496.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016762|dbj|BAD58132.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 872

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTG E+  L  +  G+T+ +IA  LG+S NTV  ++  I  K    +R+ A+  A
Sbjct: 812 LTGTELRVLKHLPTGRTTSQIAADLGVSVNTVKTHLRGIYGKLGIASRADALTEA 866


>gi|312138632|ref|YP_004005968.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311887971|emb|CBH47283.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 205

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+GREVE L  +++G ++  IA  L +S  TV +++     K    +R+ A+A A   
Sbjct: 142 VELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAARER 201

Query: 244 NIV 246
            ++
Sbjct: 202 GLI 204


>gi|91776114|ref|YP_545870.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91710101|gb|ABE50029.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           F LT RE E L W  +GKT+ +I  ILG S  TVN ++  +  K
Sbjct: 245 FGLTQRESEVLYWAIKGKTNRDIGDILGTSPRTVNKHMEHVFAK 288


>gi|284042145|ref|YP_003392485.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946366|gb|ADB49110.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L  ++ G+T+ EIA  L +  +TV  ++AS+M K   + R
Sbjct: 155 LTKREEEVLALVARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNR 202


>gi|227495115|ref|ZP_03925431.1| response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831567|gb|EEH63950.1| response regulator [Actinomyces coleocanis DSM 15436]
          Length = 202

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E LT  ++  T  E+A  L +S  TV N+I++I+ KT  K R+ A   A  N 
Sbjct: 143 TQREKEILTAFTDSATVAEVAAKLFLSPGTVRNHISNIISKTNAKNRAEAARIAKENG 200


>gi|218440594|ref|YP_002378923.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218173322|gb|ACK72055.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424]
          Length = 90

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 38/57 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   + +A++
Sbjct: 12  LSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELVRWALQ 68


>gi|209883854|ref|YP_002287710.1| two component transcriptional regulator, LuxR family [Oligotropha
           carboxidovorans OM5]
 gi|209872050|gb|ACI91846.1| two component transcriptional regulator, LuxR family [Oligotropha
           carboxidovorans OM5]
          Length = 224

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIVAAK 211


>gi|159040340|ref|YP_001539593.1| LuxR family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157919175|gb|ABW00603.1| transcriptional regulator, LuxR family [Salinispora arenicola
           CNS-205]
          Length = 207

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++ G  + EIA  L  S  TV N I  +  +   + R+ A+AYA+R  +
Sbjct: 147 LTSREIDVLRLMANGFDTHEIADELCYSERTVKNVIYGVTHRLKLRNRAHAVAYALRTGM 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|16119495|ref|NP_396201.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15162039|gb|AAK90642.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 210

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+  ELT RE + L  I+ GK++ + A+ L I+  T+  +  +I RK    T +G I YA
Sbjct: 143 GRLKELTTREQDVLLLIARGKSNRDAALALDIAERTMETHRKNIKRKLDIATTAGLIRYA 202

Query: 241 VRNNIV 246
           + + ++
Sbjct: 203 IDHGLI 208


>gi|52081142|ref|YP_079933.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52786522|ref|YP_092351.1| hypothetical protein BLi02787 [Bacillus licheniformis ATCC 14580]
 gi|52004353|gb|AAU24295.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52349024|gb|AAU41658.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L +I  G  + EIA  L IS  TV N+  ++M+K    ++   I YA++N
Sbjct: 150 LTVREKEILRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAIKN 207


>gi|42525668|ref|NP_970766.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|41815679|gb|AAS10647.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|325475224|gb|EGC78409.1| DNA-binding response regulator [Treponema denticola F0402]
          Length = 201

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L  RE + L  +++G  + EIA  L +S  TV NY++SI+ K   + R+  + Y
Sbjct: 143 DLNDRETDILELVADGLNNKEIANRLSLSEGTVRNYVSSILEKLNLRDRTQLVVY 197


>gi|88857442|ref|ZP_01132085.1| putative response regulator [Pseudoalteromonas tunicata D2]
 gi|88820639|gb|EAR30451.1| putative response regulator [Pseudoalteromonas tunicata D2]
          Length = 212

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +++ +H+     LT RE + L  + +G ++ EIA  L IS  TV ++I S+  K    +R
Sbjct: 139 QAFAMHFEPIKSLTKRENDVLIELVKGSSNKEIARDLNISSFTVADHIKSMFSKLNVSSR 198

Query: 234 SGAIAYAV 241
              IAY +
Sbjct: 199 GAVIAYGL 206


>gi|114048791|ref|YP_739341.1| LuxR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890233|gb|ABI44284.1| transcriptional regulator, LuxR family [Shewanella sp. MR-7]
          Length = 221

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTNRERTIIQFVSNGARNKEIADRLFISEHTVKAHISSIFRKTQSRNR 203


>gi|114561746|ref|YP_749259.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333039|gb|ABI70421.1| transcriptional regulator, LuxR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 222

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 157 LTSRERTIIQLVSSGARNKEIAQRLCISEHTVKAHISSIFRKTESRNR 204


>gi|320325287|gb|EFW81354.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 189

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   
Sbjct: 128 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINIG 187

Query: 245 IV 246
           +V
Sbjct: 188 MV 189


>gi|311114585|ref|YP_003985806.1| two component system response regulator [Gardnerella vaginalis ATCC
           14019]
 gi|310946079|gb|ADP38783.1| two component system response regulator [Gardnerella vaginalis ATCC
           14019]
          Length = 243

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           AN + SY        +LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K  
Sbjct: 173 ANAYNSYL------NDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKID 226

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R  A+ +A  N +V
Sbjct: 227 ARDRVQAVVFAYENGLV 243


>gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 242

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT+T +R+  + YA+ N++
Sbjct: 181 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHL 240

Query: 246 V 246
           V
Sbjct: 241 V 241


>gi|303256662|ref|ZP_07342676.1| nitrate/nitrite response regulator protein NarL [Burkholderiales
           bacterium 1_1_47]
 gi|330999299|ref|ZP_08323016.1| nitrate/nitrite response regulator protein NarL [Parasutterella
           excrementihominis YIT 11859]
 gi|302860153|gb|EFL83230.1| nitrate/nitrite response regulator protein NarL [Burkholderiales
           bacterium 1_1_47]
 gi|329575157|gb|EGG56708.1| nitrate/nitrite response regulator protein NarL [Parasutterella
           excrementihominis YIT 11859]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE   L  I++GKT+ EI   L IS  TV  ++  ++ K + ++R  A  +A
Sbjct: 153 ELTEREKSVLKLIAQGKTNKEIGKALEISDGTVKVHVKHVLHKLSFRSRVEAAVWA 208


>gi|300782049|ref|YP_003762340.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791563|gb|ADJ41938.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 222

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E+T RE E L  ++ G ++DEIA  L IS  T   +++ IM K   + R+  +  A  + 
Sbjct: 155 EITDREREVLGLVAGGMSNDEIAAHLVISTATARTHVSRIMTKIGARDRAQLVVLAYESG 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|294811923|ref|ZP_06770566.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324522|gb|EFG06165.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 234

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  ++ G T+ EIA  +G+   TV +++A+++ KT  + R+ A+  A  + 
Sbjct: 170 KLTEREADTLRLMAAGLTNGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYESG 229

Query: 245 IV 246
            +
Sbjct: 230 FI 231


>gi|239944416|ref|ZP_04696353.1| LuxR family transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239990873|ref|ZP_04711537.1| LuxR family transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291447883|ref|ZP_06587273.1| response regulator receiver protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350830|gb|EFE77734.1| response regulator receiver protein [Streptomyces roseosporus NRRL
           15998]
          Length = 240

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  +SEG  + EIA     S  TV N +  +  +   + R+ A+ YA+R+ +
Sbjct: 180 LTAREAEMIRLVSEGCDTAEIAQKTSYSERTVKNVLHEVATRLELRNRAHAVGYAMRHGL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|257057888|ref|YP_003135720.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587760|gb|ACU98893.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 216

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G T+ +IA  L IS  TV N++ S +RK     R     YA+ + +
Sbjct: 153 LTERETEVLRLVAKGLTAKQIADRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 212


>gi|149371877|ref|ZP_01891196.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149355017|gb|EDM43578.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 223

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I +  T+ EI   L ISR TV  +  +++ KT  K  +G + YA+++N+
Sbjct: 157 LSKRELEVLELICQQFTTVEIGEKLYISRRTVEVHRNNLLLKTDVKNVAGLVIYAIQHNL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 242

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N++
Sbjct: 181 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHL 240

Query: 246 V 246
           V
Sbjct: 241 V 241


>gi|116254846|ref|YP_770682.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|19338425|emb|CAD19127.2| two-component response regulator [Rhizobium leguminosarum bv.
           viciae]
 gi|115259494|emb|CAK10632.1| two-component response transcriptional regulator of mctP [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G D  LT RE + L  I  G+++ EIA  LGI+  T   +  ++ +K    T +G I
Sbjct: 143 VEEGSD-PLTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGITTTAGLI 201

Query: 238 AYAVRNNIV 246
            YA+ + IV
Sbjct: 202 RYALDHGIV 210


>gi|86360200|ref|YP_472089.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86284302|gb|ABC93362.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 223

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I YA+ + I
Sbjct: 150 LTPRERDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIRYALDHGI 209


>gi|16125332|ref|NP_419896.1| LuxR family transcriptional regulator [Caulobacter crescentus CB15]
 gi|221234071|ref|YP_002516507.1| LuxR family transcriptional regulator [Caulobacter crescentus
           NA1000]
 gi|13422382|gb|AAK23064.1| transcriptional regulator, LuxR family [Caulobacter crescentus
           CB15]
 gi|220963243|gb|ACL94599.1| LuxR family transcriptional regulator [Caulobacter crescentus
           NA1000]
          Length = 137

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              LTG+E++ L  ++ G+++ EIA  LG+S NTV  ++ ++  K     R+ A+  A
Sbjct: 73  SLSLTGQEIKVLERLAAGRSNKEIARDLGLSPNTVKTHVGNLYAKLEVSRRTQAVGKA 130


>gi|158318087|ref|YP_001510595.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113492|gb|ABW15689.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 244

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ISEG +++EIA  L +   TV ++++S++ K   + R+ A+  A  +  
Sbjct: 179 LTDREADVLRLISEGLSNNEIANRLYLGAQTVKSHVSSVLAKLGARDRTQAVIIAYESGF 238

Query: 246 V 246
           V
Sbjct: 239 V 239


>gi|330896907|gb|EGH28489.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 89

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE E L  + +G T+ EIA  L IS  TV ++++S++RK   +TR+  +A  V
Sbjct: 10  VTMREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVRTRAELMARCV 65


>gi|307244636|ref|ZP_07526740.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492017|gb|EFM64066.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 216

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE++ L  I++G ++ EIA  L +S  TV NYI+SI+ K   + R+    Y +++
Sbjct: 159 LSEREIDVLELIADGLSNKEIAGKLYLSEGTVRNYISSILVKLDLRDRTQLAIYYLKS 216


>gi|258592846|emb|CBE69155.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 237

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +H      LT RE + L  I++G    EIA  L +S  TV N+ A I +K     R+  +
Sbjct: 167 LHDSLGARLTLRETQVLQHIAQGLPDREIAESLQLSVRTVENHAARIRKKLQVDNRTALV 226

Query: 238 AYAVRNNIV 246
            YA+R +++
Sbjct: 227 RYALRAHLI 235


>gi|289641751|ref|ZP_06473909.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289508395|gb|EFD29336.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           D  LT RE+E L  +++G T+  IA  L +S  TV  ++  I+RK     R+ A++
Sbjct: 342 DSPLTRREIEVLRHMADGATNARIATRLMVSEGTVKVHVKHILRKLGATNRAEAVS 397


>gi|289642550|ref|ZP_06474693.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507638|gb|EFD28594.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 389

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  ++ G T+ +IA  L +S  TV +++  I+RK     R+ AIA
Sbjct: 324 LTPREREVLALLASGATNAQIADRLTVSETTVKSHVKHILRKLHASNRAEAIA 376


>gi|226363828|ref|YP_002781610.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242317|dbj|BAH52665.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 546

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV  L  ++ GK++  +A  L +S  TV  ++++I  K    +RS A AYA  +++
Sbjct: 482 LTPREVCVLRLVAAGKSNRAVATDLFLSEKTVARHLSNIFVKLGISSRSAATAYAYEHHL 541

Query: 246 V 246
           V
Sbjct: 542 V 542


>gi|242279313|ref|YP_002991442.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242122207|gb|ACS79903.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           salexigens DSM 2638]
          Length = 217

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 181 GKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G+D E      LT RE++ L  +++GK++  IA  + +S  TV  ++ SI+ K     R 
Sbjct: 144 GEDSETPTPDPLTPRELDTLKLVAKGKSNKAIAEEMFVSEATVRTHMTSILSKLHLANRV 203

Query: 235 GAIAYAVRNNI 245
            A  YA+R  I
Sbjct: 204 EATLYALREGI 214


>gi|118593080|ref|ZP_01550467.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
 gi|118434387|gb|EAV41041.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
          Length = 233

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+ECL+ I+ G     IA  LGI   TV  ++ +  +K    TR  A+A A
Sbjct: 175 LTPRELECLSLIASGLRVKAIAAELGIQPVTVELHLGNARKKLGAATREHAVALA 229


>gi|99080717|ref|YP_612871.1| two component LuxR family transcriptional regulator [Ruegeria sp.
           TM1040]
 gi|99036997|gb|ABF63609.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           TM1040]
          Length = 233

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 166 LTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 225

Query: 246 V 246
           +
Sbjct: 226 L 226


>gi|320106542|ref|YP_004182132.1| LuxR family transcriptional regulator [Terriglobus saanensis
           SP1PR4]
 gi|319925063|gb|ADV82138.1| transcriptional regulator, LuxR family [Terriglobus saanensis
           SP1PR4]
          Length = 236

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 33/74 (44%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +S +     +   T RE + L  ++ G T+ +IA  L I   T   ++  ++RK     
Sbjct: 154 LRSPEEKERPELRFTPREKQVLELLAAGHTNRDIAGKLSIDETTAKTHVGRLLRKIGVPN 213

Query: 233 RSGAIAYAVRNNIV 246
           R G   YAV   IV
Sbjct: 214 RVGLALYAVEKQIV 227


>gi|284046383|ref|YP_003396723.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950604|gb|ADB53348.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 224

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+  ELT RE++    ++ G T+ EIA  L +   TV  ++ SI+ K A + R+  +  A
Sbjct: 149 GRLAELTPRELDVARLVARGMTNAEIAAELFLGEGTVKTHVTSILSKLALRNRTQIVVAA 208

Query: 241 VRNNIV 246
             + +V
Sbjct: 209 YESGLV 214


>gi|56461106|ref|YP_156387.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56180116|gb|AAV82838.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           loihiensis L2TR]
          Length = 210

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT ++   L ++ EG  + +IA  LGI+  TV  +I +I RK    +R+ A+  A R
Sbjct: 150 ELTPQQYRVLHFLHEGLLNKQIAYQLGITEATVKAHITAIFRKLGVYSRTQAVLVAER 207


>gi|541659|dbj|BAA06490.1| LasR [Pseudomonas aeruginosa]
          Length = 239

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A Q+    +++    K   LT  E E L W + GKTS EI+VI   S   VN ++ +I R
Sbjct: 158 ALQSGAGLAFEHPVSKPVVLTSWEKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRR 217

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    +R  A   AV   ++
Sbjct: 218 KFGVTSRRVAAIMAVNLGLI 237


>gi|260591672|ref|ZP_05857130.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
 gi|260536472|gb|EEX19089.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
          Length = 204

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV +  
Sbjct: 139 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 198

Query: 246 V 246
           V
Sbjct: 199 V 199


>gi|171057984|ref|YP_001790333.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775429|gb|ACB33568.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 273

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT R+ + L  + EGK +  IA  LG+S  TV +++A+++R    ++R  A+  AVR+
Sbjct: 195 LGLTPRQAKVLMLLMEGKANKVIAKELGLSVETVKDHVAAVLRCLGVRSRMQAV-IAVRH 253


>gi|118443997|ref|YP_877397.1| response regulator [Clostridium novyi NT]
 gi|118134453|gb|ABK61497.1| Response regulator (CheY-like recever domain and HTH) [Clostridium
           novyi NT]
          Length = 209

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+E L  I +G ++ EI+  + +S  T+ NYI ++++K   + R+    Y ++N
Sbjct: 151 LTERELEILALIGQGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQLAIYYLKN 208


>gi|186470967|ref|YP_001862285.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197276|gb|ACC75239.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 231

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ R+ E L  I+ G+T+ EIA  L I+  TV  ++  +++K    +R  A  YAV
Sbjct: 170 LSARQEEILAHIARGETNKEIARALNIAETTVKIHVQQVLKKLKLASRVQAATYAV 225


>gi|302557180|ref|ZP_07309522.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces griseoflavus Tu4000]
 gi|302474798|gb|EFL37891.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces griseoflavus Tu4000]
          Length = 382

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S +TV  ++++++ K A + R  A+  A    +
Sbjct: 317 LTAREVETLRLLARGLSNAEIATTLFVSEHTVKTHVSNVLGKLALRDRVQAVICAYETGL 376

Query: 246 V 246
           +
Sbjct: 377 I 377


>gi|259419012|ref|ZP_05742929.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
 gi|259345234|gb|EEW57088.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT+ +IA+++G++  T+  ++         +T + A+  A  +N
Sbjct: 186 LTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLCVETTAQAVLKAALHN 244


>gi|255532626|ref|YP_003092998.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345610|gb|ACU04936.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 224

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + + RE+E L  I+EG T+ E+A  L IS+ TV  +  S+  KT  +  +  I YA+ +
Sbjct: 161 IDFSSREIEILELIAEGLTNQEMADRLFISKRTVEGHRQSLTDKTGCRNTAALIRYAMVH 220

Query: 244 NIV 246
           +I+
Sbjct: 221 DIL 223


>gi|302345392|ref|YP_003813745.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
 gi|302150188|gb|ADK96450.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
          Length = 204

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV
Sbjct: 135 KNKILSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAV 194


>gi|38230157|gb|AAR14177.1| AHL receptor-like protein [Aeromonas sp. NLEP A-1607]
          Length = 58

 Score = 39.7 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT R   CL    EGKTS  IA  LGI+  T N ++  + RK  +     AI
Sbjct: 7   LTDRXTXCLFXAXEGKTSGXIACXLGITERTXNYHLNXVTRKXGSMNXYXAI 58


>gi|29832148|ref|NP_826782.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609266|dbj|BAC73317.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE E LT ++ G  + EIA  LG+S  T   +++ IM K   + R+  +  A  + +
Sbjct: 160 LSGREREVLTLVARGLNNTEIAESLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|83748008|ref|ZP_00945038.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551]
 gi|207738688|ref|YP_002257081.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609]
 gi|83725310|gb|EAP72458.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551]
 gi|206592056|emb|CAQ58962.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609]
          Length = 252

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E    I +G+++ EIA ++  S +TV +Y++SIM KT  + R
Sbjct: 183 LTEREREVALLIGQGRSNAEIAQVVCKSESTVKHYLSSIMDKTGCENR 230


>gi|329940271|ref|ZP_08289553.1| respose regulatory protein [Streptomyces griseoaurantiacus M045]
 gi|329301097|gb|EGG44993.1| respose regulatory protein [Streptomyces griseoaurantiacus M045]
          Length = 211

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  +S G  + EIA  L IS  TV  ++  I  K   +TR+GA+A A
Sbjct: 150 LSARESEILQQLSGGLGNREIARALFISEATVKTHLQRIYGKLGVETRAGAVAVA 204


>gi|325919969|ref|ZP_08181953.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325549544|gb|EGD20414.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 254

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G T+  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|320334192|ref|YP_004170903.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755481|gb|ADV67238.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 211

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+ RE E L  +++G ++ EIA  LG+S +TV  ++  I+ K +   R+ A   A
Sbjct: 146 GEVSALSDRETEVLRRVADGLSNKEIARDLGVSVSTVKVHVQDILTKLSASDRTHAAVKA 205

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 206 LRAGLL 211


>gi|290957234|ref|YP_003488416.1| response regulator [Streptomyces scabiei 87.22]
 gi|260646760|emb|CBG69857.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 241

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE++ L  ++EG  + EIA  L  S  TV N +  +  +   + R+ A+AYA+R   
Sbjct: 181 LVPREIDVLRLVAEGMDTGEIASKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALREGY 240

Query: 246 V 246
           +
Sbjct: 241 I 241


>gi|330891500|gb|EGH24161.1| LuxR transcriptional regulator [Pseudomonas syringae pv. mori str.
           301020]
          Length = 247

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+  A+
Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAI 242


>gi|220935078|ref|YP_002513977.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996388|gb|ACL72990.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 220

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G LA  QAN F           EL+GRE + L  I +G+T   IA  L IS  TV+ Y 
Sbjct: 138 LGGLAKGQANPFD----------ELSGRERQILLMILQGQTPQAIATALNISPKTVSTYK 187

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             +M K         +  A ++ ++
Sbjct: 188 CRVMGKLGISNDMQLVTLAAQHGLI 212


>gi|94970529|ref|YP_592577.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552579|gb|ABF42503.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 228

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DF LT RE+E +  ++EG  + EIA  L IS  TV  ++  I  K    TR     +A+ 
Sbjct: 162 DFGLTPRELEIVALVTEGCGNREIATRLTISEETVKRHLTHIFDKVGMSTRLELALFALD 221

Query: 243 NNI 245
           +N+
Sbjct: 222 HNL 224


>gi|116620395|ref|YP_822551.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223557|gb|ABJ82266.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 200

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAI 237
           W +   LT RE + L    EG++  EIA +L +S  TV NY++  + K   A +T +  I
Sbjct: 134 WTEADPLTDRERQVLRHAGEGRSGAEIAGLLNLSEGTVRNYLSEAISKLGAANRTEAARI 193

Query: 238 AY 239
           A+
Sbjct: 194 AH 195


>gi|297560440|ref|YP_003679414.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844888|gb|ADH66908.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 234

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EIA  L +   TV +++ SI+ K   + R  A+ YA  + +
Sbjct: 160 LTAREHEVLRLLARGWSNAEIAAHLVLGETTVKSHVGSILTKLELRDRVQAVVYAYEHGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|219664363|gb|ACL31213.1| two-component system putative response regulator [Rhodococcus sp.
           TFB]
          Length = 206

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE+E L  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+
Sbjct: 145 LSSRELEVLKLIASGLTNTEIAEGLTVSSRTVESHRASIQRKLLLRTRA 193


>gi|194292820|ref|YP_002008727.1| response regulator in two-component regulatory system with narx,
           regulates anaerobic respiration and fermentation
           (luxr/uhpa familiy) [Cupriavidus taiwanensis LMG 19424]
 gi|193226724|emb|CAQ72675.1| response regulator in two-component regulatory system with NarX,
           regulates anaerobic respiration and fermentation
           (LuxR/UhpA familiy) [Cupriavidus taiwanensis LMG 19424]
          Length = 217

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G+++ EIA  LG++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 155 LTAREREIVQGLARGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214


>gi|189466603|ref|ZP_03015388.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM
           17393]
 gi|189434867|gb|EDV03852.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM
           17393]
          Length = 275

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           KD  LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  YA+
Sbjct: 204 KDDLLTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLGVNNAHEATKYAM 263

Query: 242 RNNIV 246
           +  IV
Sbjct: 264 KAGIV 268


>gi|114320822|ref|YP_742505.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227216|gb|ABI57015.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 221

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L  ++  +++  IA  LG+S  TV  +I SI+RK   K+R  A   AV
Sbjct: 156 LTPREREILMHVARAESNKVIARELGVSDGTVKLHIKSILRKLGVKSRVEAAVKAV 211


>gi|320008377|gb|ADW03227.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 202

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  REV+ L  ++EG  + EIA  L  S  TV N +  +  +   + R+ A+AYA+R   
Sbjct: 142 LAPREVDVLRLVAEGMDTGEIASKLSYSERTVKNVMHGLTTRLQLRNRAHAVAYALREGY 201

Query: 246 V 246
           +
Sbjct: 202 I 202


>gi|302038541|ref|YP_003798863.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300606605|emb|CBK42938.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+A Q  +F           ELT R+ E L  I+EG+T  EIA +L IS  TV  + A I
Sbjct: 138 LSAGQVGLFAQRQ-------ELTPRQREVLQLIAEGRTIKEIASLLNISPKTVEFHKAQI 190

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           +     +T +    YA+ + +
Sbjct: 191 IFHLNLRTTAELTKYALAHGL 211


>gi|295400540|ref|ZP_06810518.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977443|gb|EFG53043.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 557

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE++ L  + +G ++ EIA  L IS +TV N+I +I +K     RS  IA   + N
Sbjct: 489 LTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 547


>gi|300781389|ref|ZP_07091243.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533096|gb|EFK54157.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 228

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  +  G T+ EIA  L IS  TV  ++  ++ KT ++ R  A  +A R  
Sbjct: 159 ELTEREHEILIAVGRGWTNTEIAERLFISMPTVKTHVGRVLMKTHSRDRVHAALFAYRTG 218

Query: 245 IV 246
           +V
Sbjct: 219 LV 220


>gi|156932979|ref|YP_001436895.1| transcriptional regulator NarP [Cronobacter sakazakii ATCC BAA-894]
 gi|156531233|gb|ABU76059.1| hypothetical protein ESA_00782 [Cronobacter sakazakii ATCC BAA-894]
          Length = 214

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LTGRE++ L  ++ G ++ +IA  L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTGRELDVLQEVARGLSNKQIASALQISEETVKVHIRNLLRKLNVRSRVAA 204


>gi|153007788|ref|YP_001369003.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559676|gb|ABS13174.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 213

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE + L  ++EG ++ EIA+ LGIS  TV  +  +I +K    + +G   Y +
Sbjct: 145 KSEGLSVRENDVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGLTRYVI 204

Query: 242 RNNI 245
            N +
Sbjct: 205 ENRL 208


>gi|187923501|ref|YP_001895143.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714695|gb|ACD15919.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 522

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE E L  IS G ++ E+A IL +S +TV  ++ S+ RK    TR+ A
Sbjct: 462 LSPREAEVLKHISLGASNKEVARILELSPSTVRTHVESVFRKLECSTRAAA 512


>gi|148257278|ref|YP_001241863.1| putative two-component hybrid sensor histidine kinase and response
           regulator [Bradyrhizobium sp. BTAi1]
 gi|146409451|gb|ABQ37957.1| putative two-component hybrid sensor histidine kinase and response
           regulator [Bradyrhizobium sp. BTAi1]
          Length = 596

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           T R+ E +  +  G  S  IAV LGISR TV ++ ASIM+K   ++
Sbjct: 538 TRRQQEVMQRVLAGHPSKNIAVDLGISRRTVESHRASIMKKAGVRS 583


>gi|291543163|emb|CBL16273.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus bromii L2-63]
          Length = 212

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + T RE+E L  ++ G T+ EIA  L I+  TV NYI  ++ KT  K+R+
Sbjct: 142 DFTERELEVLRELTSGDTNTEIAKRLYIAPGTVKNYIQYMLEKTGFKSRT 191


>gi|271967702|ref|YP_003341898.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510877|gb|ACZ89155.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L   +EG    EIA  L +S  TV NY++ I+ K   +TR  A+  A
Sbjct: 141 LTTRELEVLKAAAEGAPVREIADRLFLSGGTVRNYLSRILAKIGARTRVEAVTIA 195


>gi|218674909|ref|ZP_03524578.1| transcriptional activator protein [Rhizobium etli GR56]
          Length = 241

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 183 DF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           DF +L+ RE++CL   + G  + +I   L IS + V  Y+AS  RK    T S A+A A
Sbjct: 177 DFPQLSRRELQCLEMTASGLMAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKA 235


>gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 242

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT+T +R+  + YA+ N++
Sbjct: 181 FTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHL 240

Query: 246 V 246
           V
Sbjct: 241 V 241


>gi|99081053|ref|YP_613207.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037333|gb|ABF63945.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT+ +IA+++G++  T+  ++       + +T + A+  A  +N
Sbjct: 186 LTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARATLSVETTAQAVLKAALHN 244


>gi|313204085|ref|YP_004042742.1| transcriptional regulator, luxr family [Paludibacter
           propionicigenes WB4]
 gi|312443401|gb|ADQ79757.1| transcriptional regulator, LuxR family [Paludibacter
           propionicigenes WB4]
          Length = 220

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK   LT  E+E +   ++GKT+ EIA    +S +T+N +  +I RK         I +A
Sbjct: 148 GKRDLLTHTELELIQLFTQGKTAKEIADSRCLSHHTINTHRKNIFRKLEINNVQELIKFA 207

Query: 241 VRNNIV 246
           ++N +V
Sbjct: 208 LKNGLV 213


>gi|288957190|ref|YP_003447531.1| two-component response regulator [Azospirillum sp. B510]
 gi|288909498|dbj|BAI70987.1| two-component response regulator [Azospirillum sp. B510]
          Length = 241

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 29/50 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           L+ RE E L  I EGK S  IA  LGIS  TV  + A IM KTA ++  G
Sbjct: 159 LSRRESEVLELIVEGKQSKTIAWELGISIKTVEVHRARIMEKTACRSIVG 208


>gi|290962398|ref|YP_003493580.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260651924|emb|CBG75054.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
          Length = 913

 Score = 39.7 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+GRE + L  +    +++EIA  L +S NTV  ++ S+ RK A   R+ A+  A
Sbjct: 852 DLSGRERDVLRGLDRMMSTEEIAADLCVSVNTVKTHLKSVFRKLAVNRRNDAVRRA 907


>gi|10954765|ref|NP_066700.1| hypothetical protein pRi1724_p120 [Agrobacterium rhizogenes]
 gi|10567429|dbj|BAB16238.1| riorf119 [Agrobacterium rhizogenes]
          Length = 224

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE  CL W ++GK++ E A++ GI+  TV +Y+     K    T    +A A  + +
Sbjct: 164 LSPREAMCLMWAAKGKSAPETAMLTGINARTVQHYLDKAREKLDAATVPHLVAIAKDHGL 223

Query: 246 V 246
           V
Sbjct: 224 V 224


>gi|190573818|ref|YP_001971663.1| putative LuxR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011740|emb|CAQ45360.1| putative LuxR family transcriptional regulatory protein
           [Stenotrophomonas maltophilia K279a]
          Length = 234

 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L W++ G+   EIA  LG+S  TV N++    ++    T + A+  A R  
Sbjct: 172 LSTREREVLRWVAAGRRQAEIAATLGLSTRTVENHLRHARQRLGVATTAQAVRAANRRG 230


>gi|331696783|ref|YP_004333022.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951472|gb|AEA25169.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 892

 Score = 39.3 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  ++   T+ EI   + +S NTV  ++ SI RK    +R  A+A  V   I
Sbjct: 825 LSDREVEVLGHLAAMLTAAEIGAEMFVSVNTVKTHLKSIYRKLGVSSRRQAVARGVELGI 884

Query: 246 V 246
           V
Sbjct: 885 V 885


>gi|254444034|ref|ZP_05057510.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198258342|gb|EDY82650.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 209

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+E L  + +G+ + EIA  LGI+  TV  ++ ++  K     R+ A   AV   +
Sbjct: 145 LTAKELEILELVVQGRRNKEIAADLGITEFTVKGHLKTVFLKLQVSDRTEAAIKAVSEGL 204

Query: 246 V 246
           V
Sbjct: 205 V 205


>gi|116696270|ref|YP_841846.1| response regulator [Ralstonia eutropha H16]
 gi|113530769|emb|CAJ97116.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 218

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G+++ EIA  LG++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 155 LTAREREIVQGLARGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214


>gi|325676301|ref|ZP_08155980.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325552862|gb|EGD22545.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 208

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+GREVE L  +++G ++  IA  L +S  TV +++     K    +R+ A+A A   
Sbjct: 145 VELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAARER 204

Query: 244 NIV 246
            ++
Sbjct: 205 GLI 207


>gi|226308220|ref|YP_002768180.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226187337|dbj|BAH35441.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 881

 Score = 39.3 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +  G    EIA  L +S NT+ +++ ++ RK    +R  A+A A R+N
Sbjct: 815 QLTKREMDVLVELGLGIPIGEIARKLFVSNNTLKSHLRALYRKLGAHSREEAVAAAHRHN 874

Query: 245 IV 246
           ++
Sbjct: 875 LL 876


>gi|297197731|ref|ZP_06915128.1| response regulatory protein [Streptomyces sviceus ATCC 29083]
 gi|197716240|gb|EDY60274.1| response regulatory protein [Streptomyces sviceus ATCC 29083]
          Length = 215

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  ++ G  + EIA  L IS  TV  ++  I  K   +TR+GA+A A
Sbjct: 154 LSAREHEILAQLARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVA 208


>gi|325917294|ref|ZP_08179515.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536514|gb|EGD08289.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 254

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE ECL + ++G T+  IA  L  S  TVN ++ S  RK   + R  A+
Sbjct: 192 LTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAV 243


>gi|308235176|ref|ZP_07665913.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 240

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           AN + SY        +LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K  
Sbjct: 170 ANAYNSYL------NDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKID 223

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R  A+ +A  N +V
Sbjct: 224 ARDRVQAVVFAYENGLV 240


>gi|309791230|ref|ZP_07685762.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308226792|gb|EFO80488.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 218

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++G ++ EIA  L IS  T   ++++I+ K     R+    YA+R  
Sbjct: 151 QLTPREMDVLRLVAKGMSNKEIADTLVISEKTTKTHLSNILSKLHLADRTQVAIYALRKR 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|288918501|ref|ZP_06412852.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350141|gb|EFC84367.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 231

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L+ I+EG T+ +IA  + ++  TV NY++S++ K   ++R+ A  +A +
Sbjct: 172 LTDQERRILSLIAEGLTNRQIAARMFLAEKTVKNYVSSMLAKLGMESRTQAAVFATK 228


>gi|254523232|ref|ZP_05135287.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219720823|gb|EED39348.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 216

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REV  L  ++ G ++ EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+   I+
Sbjct: 159 REVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 216


>gi|254438192|ref|ZP_05051686.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307]
 gi|198253638|gb|EDY77952.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307]
          Length = 256

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE++ LT+++ G +  ++A  L IS +T+  Y+ S   K        A+A AV   +
Sbjct: 175 LSGREIDVLTYLAMGYSRSQVAQTLTISEHTLRAYVESARFKLGASNTMHAVARAVSEGL 234

Query: 246 V 246
           +
Sbjct: 235 I 235


>gi|297191143|ref|ZP_06908541.1| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197723336|gb|EDY67244.1| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 282

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE++ L  ++ G T+   A  LG+   TV  Y+ S MRK   +TR  A+  A R
Sbjct: 218 GVSLTPRELDVLGCVASGATNATAAERLGLRPETVKAYLRSAMRKLGARTRLEAVVAARR 277

Query: 243 NNIV 246
             ++
Sbjct: 278 AGLL 281


>gi|297203696|ref|ZP_06921093.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197711744|gb|EDY55778.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++ EIA  L +S +TV  ++++++ K   + R  A+  A    +
Sbjct: 157 LTAREVEILRMLARGLSNAEIATTLFVSEHTVKTHVSNVLSKLGLRDRVQAVICAYETGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|16077609|ref|NP_388423.1| two-component response regulator YdfH [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308372|ref|ZP_03590219.1| hypothetical protein Bsubs1_03053 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312693|ref|ZP_03594498.1| hypothetical protein BsubsN3_03024 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317617|ref|ZP_03598911.1| hypothetical protein BsubsJ_02988 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321893|ref|ZP_03603187.1| hypothetical protein BsubsS_03059 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314195|ref|YP_004206482.1| two-component response regulator YdfH [Bacillus subtilis BSn5]
 gi|68566110|sp|P96686|YDFI_BACSU RecName: Full=Transcriptional regulatory protein ydfI
 gi|1881349|dbj|BAA19376.1| ydfI [Bacillus subtilis]
 gi|2632842|emb|CAB12349.1| two-component response regulator [YdfH] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320020469|gb|ADV95455.1| two-component response regulator (YdfH) [Bacillus subtilis BSn5]
          Length = 213

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +EV  L  I++G  S  IA  LG+S  TV + + SI  K    +R+ A+  A++  
Sbjct: 148 QLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKG 207

Query: 245 IV 246
           I+
Sbjct: 208 IL 209


>gi|298369040|ref|ZP_06980358.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298283043|gb|EFI24530.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 218

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +T+  ++ +I+RK    +R  A  YAV++ +
Sbjct: 153 LTPREMEILGYLAAGHSNKVIARHLELAESTIKVHVQNILRKLNLSSRVQAAVYAVQHKV 212


>gi|302531524|ref|ZP_07283866.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440419|gb|EFL12235.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 208

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  I +G ++ EIA  L ++  TV NY+ S++ K   + R+ A A+  R  
Sbjct: 149 LTDRERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAAWIARRG 207


>gi|312112369|ref|YP_003990685.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217470|gb|ADP76074.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1]
          Length = 557

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE++ L  + +G ++ EIA  L IS +TV N+I +I +K     RS  IA   + N
Sbjct: 489 LTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 547


>gi|239816237|ref|YP_002945147.1| LuxR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802814|gb|ACS19881.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 188

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 26/48 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELT RE E    +  G TS EI   LGIS  TV  + A +MRK A  T
Sbjct: 130 ELTPREREVAAQVMRGLTSKEIGKALGISHRTVELHRARLMRKYAAAT 177


>gi|218130412|ref|ZP_03459216.1| hypothetical protein BACEGG_02001 [Bacteroides eggerthii DSM 20697]
 gi|217987413|gb|EEC53743.1| hypothetical protein BACEGG_02001 [Bacteroides eggerthii DSM 20697]
          Length = 236

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIAV   +S +T+N++  +I RK        A  YA++  I
Sbjct: 169 LTSAERSILKEIALGKTTKEIAVERNLSFHTINSHRKNIFRKLGVNNAHEATKYAMKAGI 228

Query: 246 V 246
           V
Sbjct: 229 V 229


>gi|209518938|ref|ZP_03267749.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. H160]
 gi|209500661|gb|EEA00706.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. H160]
          Length = 913

 Score = 39.3 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E +  I++G+++ EIA  LGI+  TV +++ SI  K     R+ A++ A
Sbjct: 850 LSARESEIVGLIAQGQSNKEIARSLGIAPETVKSHVKSIFLKLEVDKRAHAVSRA 904


>gi|119492591|ref|ZP_01623809.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119453060|gb|EAW34230.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 211

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE E L  + EGKT+ +IA  L +S NT+  ++  IM K +   R  A   A+
Sbjct: 146 KSTNLSPREFEVLKLMVEGKTNVKIAEELYLSPNTIKTHVRGIMNKLSVDDRVQAAVTAL 205

Query: 242 RNNIV 246
           R  +V
Sbjct: 206 RLGLV 210


>gi|1706361|sp|P54662|DEGU_BREBE RecName: Full=Transcriptional regulatory protein degU
 gi|710496|gb|AAC41439.1| transcriptional activator protein [Brevibacillus brevis]
          Length = 236

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++G ++  I   L IS  TV N++++I++K     R+ A+  +++N
Sbjct: 173 LTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESIKN 230


>gi|261823621|ref|YP_003261727.1| LuxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|2495420|sp|Q47189|EXPR_PECCC RecName: Full=Transcriptional activator protein expR
 gi|599736|emb|CAA56646.1| expR [Pectobacterium carotovorum]
 gi|261607634|gb|ACX90120.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIA+IL I   TV  +I ++++K        AI   + 
Sbjct: 180 FSQRENEILYWASMGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIE 236


>gi|329961013|ref|ZP_08299292.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
 gi|328532299|gb|EGF59103.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
          Length = 220

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           KD  LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  YA+
Sbjct: 149 KDNLLTPAERSILKEIALGKTTKEIAADRNLSFHTVNSHRKNIFRKLGVNNAHEATKYAM 208

Query: 242 RNNIV 246
           +  IV
Sbjct: 209 KAGIV 213


>gi|304382776|ref|ZP_07365260.1| transcriptional regulator [Prevotella marshii DSM 16973]
 gi|304336095|gb|EFM02341.1| transcriptional regulator [Prevotella marshii DSM 16973]
          Length = 318

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 251 LSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|300782911|ref|YP_003763202.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792425|gb|ADJ42800.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 207

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ RE E L  ++ G ++ EIA  L  S+ TV + +  +  +   + RS A+AYA+R  +
Sbjct: 147 MSDRETEVLKLVAAGHSTQEIADELCYSQRTVKSILHDVTNRFQLRNRSHAVAYALREGL 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|256397990|ref|YP_003119554.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256364216|gb|ACU77713.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 221

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I+ G ++ EIA  L ++  TV  +++ I+ KT  + R+ A+  A  + +
Sbjct: 156 LTPRELDVLRLIARGLSNQEIAGELVLAEQTVKTHVSRILAKTGLRDRAQAVVLAYESGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|254463119|ref|ZP_05076535.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium HTCC2083]
 gi|206679708|gb|EDZ44195.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 201

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++G+++ E+A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 134 LTGREQTVLLQLAKGQSNKEVAAALNISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 193

Query: 246 V 246
           +
Sbjct: 194 L 194


>gi|154685055|ref|YP_001420216.1| YdfI [Bacillus amyloliquefaciens FZB42]
 gi|154350906|gb|ABS72985.1| YdfI [Bacillus amyloliquefaciens FZB42]
          Length = 211

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E+  L  +++G  S  IA  LGIS  TV   + SI  K    +R+ A+  A++  
Sbjct: 146 QLTDKEIIVLEAVAQGHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKG 205

Query: 245 IV 246
           I+
Sbjct: 206 IL 207


>gi|315123291|ref|YP_004065297.1| two-component system regulatory protein [Pseudoalteromonas sp.
           SM9913]
 gi|315017051|gb|ADT70388.1| two-component system regulatory protein [Pseudoalteromonas sp.
           SM9913]
          Length = 204

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTG+E   L  +S G ++  IA  L  S  T+ N+++ I+ K   K R+ A+  A+ +N+
Sbjct: 144 LTGKEQTVLQCLSLGMSNKVIAKKLDNSEGTIRNHVSQILAKLEVKDRTQAVIKAINHNL 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|308068201|ref|YP_003869806.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
 gi|305857480|gb|ADM69268.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
          Length = 218

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ELT  EV  +  I +G T D+IA+ + +SR +++NY+  I  K    +R+ AI
Sbjct: 151 ELTQTEVFIMERIVQGITYDKIAIEIEVSRRSIDNYLRKIYAKLGVSSRAQAI 203


>gi|289676954|ref|ZP_06497844.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
 gi|330946341|gb|EGH47461.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330977851|gb|EGH77754.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 89

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE E L  + +G T+ EIA  L IS  TV ++++S++RK   +TR+  +A  V
Sbjct: 10  VTMREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVRTRAELMARCV 65


>gi|254466822|ref|ZP_05080233.1| transcriptional regulator, LuxR family, putative [Rhodobacterales
           bacterium Y4I]
 gi|206687730|gb|EDZ48212.1| transcriptional regulator, LuxR family, putative [Rhodobacterales
           bacterium Y4I]
          Length = 242

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G  +  IA  LGI+  TV   + S  RK   KTR  A+A AVR+ +
Sbjct: 180 LSSREKQMLALLAAGYLNTRIAHELGIAEVTVRKTLLSARRKLGAKTREEALAIAVRSGL 239

Query: 246 V 246
           +
Sbjct: 240 L 240


>gi|169260111|gb|ACA51941.1| BovR [Streptococcus equinus]
          Length = 198

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L ++ EG    EIA  L IS  T+ N+I +I+ K    +   AI  A
Sbjct: 136 ELTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLEVDSTIRAIIKA 191


>gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 242

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N++
Sbjct: 181 FTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHL 240

Query: 246 V 246
           V
Sbjct: 241 V 241


>gi|221126751|ref|XP_002164776.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 202

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A++F    V    + +LT  E   L  + EG TS EIA+ L IS  TV  +  ++  K  
Sbjct: 119 ASLFVDDSVTEATEIKLTNSETTILQLVGEGLTSREIALKLNISEGTVRKHRENLRSKLG 178

Query: 230 TKTRSGAIAYAVR 242
            +  +   AYA+R
Sbjct: 179 IRNSAEMAAYAIR 191


>gi|111221722|ref|YP_712516.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111149254|emb|CAJ60939.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 181

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E   L  I+EG T+ +IA  + ++  TV NY++S++ K   ++R+ A  +A R N
Sbjct: 122 LTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLAKLGLESRTQAAVFATRLN 180


>gi|110833650|ref|YP_692509.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis
           SK2]
 gi|110646761|emb|CAL16237.1| DNA-binding response regulator, LuxR family [Alcanivorax
           borkumensis SK2]
          Length = 224

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G  FE LT RE + L  +  G ++ EIA  + +S +TV  ++ S+ RK   K+R G + +
Sbjct: 154 GHIFESLTSRERQMLDHVVRGMSNHEIADAICLSTHTVKAHLQSLYRKVGVKSRVGVMRW 213

Query: 240 AVRNNI 245
              N++
Sbjct: 214 VHENHL 219


>gi|83716715|ref|YP_439828.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|167578289|ref|ZP_02371163.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167616427|ref|ZP_02385059.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142978|ref|ZP_05591240.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|83650540|gb|ABC34604.1| DNA-binding response regulator, LuxR family [Burkholderia
           thailandensis E264]
          Length = 214

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 33/75 (44%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N+    D        L+ RE E    ++ G T  EIA  LGIS  TV  Y A ++ K   
Sbjct: 136 NLHSPSDADAPPHERLSKREFEVFRHLAAGDTPAEIAQALGISAKTVRIYKAHVLDKLEL 195

Query: 231 KTRSGAIAYAVRNNI 245
              +  + YAV + I
Sbjct: 196 PNETALVRYAVAHRI 210


>gi|327193774|gb|EGE60651.1| two-component response regulator protein [Rhizobium etli CNPAF512]
          Length = 223

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I YA+ + I
Sbjct: 150 LTPRERDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIRYALDHGI 209


>gi|254292885|ref|YP_003058908.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254041416|gb|ACT58211.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC
           49814]
          Length = 249

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE +CL +++ G   D I   L I+  TVN +I +   K    T + A+A A+R N 
Sbjct: 189 LTDRERDCLAFLARGLRPDRIGDELSIATVTVNMHIRNARYKLKATTNAHAVAKAIRLNF 248

Query: 246 V 246
           +
Sbjct: 249 I 249


>gi|296128146|ref|YP_003635396.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296019961|gb|ADG73197.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 225

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +++G +++EIA  L +  +TV +++A  M K   ++R  A+ +A +N I
Sbjct: 161 LTPRELDILLLLAQGMSNEEIARELYLEVSTVKSHLARAMPKLGVRSRLQAVVWAYQNGI 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|221639297|ref|YP_002525559.1| response regulator [Rhodobacter sphaeroides KD131]
 gi|221160078|gb|ACM01058.1| Response regulator [Rhodobacter sphaeroides KD131]
          Length = 226

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++ + L  I EG+ + +IA  L I+  TV  ++ +IMRK   ++R+ A+
Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210


>gi|218782824|ref|YP_002434142.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764208|gb|ACL06674.1| two component transcriptional regulator, LuxR family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 219

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    ++EG T+ +IA +L IS  TV+ +  ++M+K    +      +A++N I
Sbjct: 156 LTQREKEVFQLVAEGNTNQQIADLLFISPKTVDKHRTNLMKKLDLHSAREVSNFALKNGI 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|159039748|ref|YP_001539001.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157918583|gb|ABW00011.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 270

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EGK++ EI   L +S +TV  +   + RK   + R+ A+A   R  +
Sbjct: 209 LTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGL 268

Query: 246 V 246
           V
Sbjct: 269 V 269


>gi|33636170|emb|CAE45182.1| putative ExpR protein [Pectobacterium atrosepticum]
          Length = 245

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIA+IL I   TV  +I ++++K        AI   + 
Sbjct: 180 FSQRENEILYWASMGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIE 236


>gi|66046995|ref|YP_236836.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63257702|gb|AAY38798.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|330971104|gb|EGH71170.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 89

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE E L  + +G T+ EIA  L IS  TV ++++S++RK   +TR+  +A  V
Sbjct: 10  VTMREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVRTRAELMARCV 65


>gi|284042762|ref|YP_003393102.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946983|gb|ADB49727.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 228

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   +LT RE+E L  I+ G T+ EIA  L +S  TV ++ A I +K    +R+  + YA
Sbjct: 153 GPPDDLTARELEVLRLIALGHTNAEIAQQLFLSIRTVESHRAHIQQKVRRSSRAELVRYA 212

Query: 241 VRNNIV 246
           + + ++
Sbjct: 213 LDHGLM 218


>gi|302547687|ref|ZP_07300029.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465305|gb|EFL28398.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 235

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ +  ++ G+T++E+A  L ++ +TV  ++ ++ RK A + R    A+A  N I
Sbjct: 170 LTQRELDVVRRVARGRTNEEVAADLYVTLSTVKTHLGNVQRKLAARNRVEIAAWAWENGI 229


>gi|149925599|ref|ZP_01913863.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149825716|gb|EDM84924.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 237

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           K   +T RE++ +  ++ G T+ EIA  +GIS +TV  ++  I +K    +RS A+
Sbjct: 171 KACSITDRELKVIQQVARGFTAQEIAAQMGISTHTVATHVKRIYKKLHVHSRSEAV 226


>gi|120402572|ref|YP_952401.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955390|gb|ABM12395.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 281

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE++ L  ++ G T+ E A  L +   TV +Y+ S   K  T+TR  A++ A R ++
Sbjct: 220 LTGRELDVLAQVALGCTNAEAAQRLSLKTETVKSYLRSAATKLGTRTRYEAVSRARRLHL 279

Query: 246 V 246
           +
Sbjct: 280 I 280


>gi|15616190|ref|NP_244495.1| two-component response regulator involved in degradative enzyme
           [Bacillus halodurans C-125]
 gi|10176252|dbj|BAB07347.1| two-component response regulator involved in degradative enzyme
           [Bacillus halodurans C-125]
          Length = 236

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++G ++  I   L IS  TV N++++I++K     R+ A+  +++N
Sbjct: 173 LTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESIKN 230


>gi|53719568|ref|YP_108554.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|53725272|ref|YP_102799.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67641378|ref|ZP_00440158.1| transcriptional regulator, LuxR family [Burkholderia mallei GB8
           horse 4]
 gi|76808631|ref|YP_333277.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|83719477|ref|YP_443124.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|121601485|ref|YP_992877.1| LuxR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124384920|ref|YP_001026216.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126441031|ref|YP_001058739.1| PAS [Burkholderia pseudomallei 668]
 gi|126449316|ref|YP_001080511.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126454121|ref|YP_001065994.1| sensory box transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134282296|ref|ZP_01769001.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           305]
 gi|167003157|ref|ZP_02268947.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20]
 gi|167582133|ref|ZP_02375007.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167620292|ref|ZP_02388923.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|167738866|ref|ZP_02411640.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 14]
 gi|167816087|ref|ZP_02447767.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167824461|ref|ZP_02455932.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
 gi|167845993|ref|ZP_02471501.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167894572|ref|ZP_02481974.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167902974|ref|ZP_02490179.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167911212|ref|ZP_02498303.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 112]
 gi|167919235|ref|ZP_02506326.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
 gi|217423758|ref|ZP_03455259.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226199648|ref|ZP_03795201.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237812005|ref|YP_002896456.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           MSHR346]
 gi|242314793|ref|ZP_04813809.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254177713|ref|ZP_04884368.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           10399]
 gi|254180014|ref|ZP_04886613.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|254188573|ref|ZP_04895084.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254197396|ref|ZP_04903818.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254199746|ref|ZP_04906112.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH]
 gi|254206070|ref|ZP_04912422.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU]
 gi|254258286|ref|ZP_04949340.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|254297849|ref|ZP_04965302.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|254358442|ref|ZP_04974715.1| transcriptional regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|257139354|ref|ZP_05587616.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis E264]
 gi|52209982|emb|CAH35955.1| putative LuxR-family regulatory protein [Burkholderia pseudomallei
           K96243]
 gi|52428695|gb|AAU49288.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           23344]
 gi|76578084|gb|ABA47559.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710b]
 gi|83653302|gb|ABC37365.1| transcriptional regulator, LuxR family [Burkholderia thailandensis
           E264]
 gi|121230295|gb|ABM52813.1| transcriptional regulator, LuxR family [Burkholderia mallei SAVP1]
 gi|124292940|gb|ABN02209.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC
           10229]
 gi|126220524|gb|ABN84030.1| PAS domain protein [Burkholderia pseudomallei 668]
 gi|126227763|gb|ABN91303.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|126242186|gb|ABO05279.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC
           10247]
 gi|134246334|gb|EBA46423.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           305]
 gi|147749342|gb|EDK56416.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH]
 gi|147753513|gb|EDK60578.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU]
 gi|148027569|gb|EDK85590.1| transcriptional regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|157807369|gb|EDO84539.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157936252|gb|EDO91922.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698752|gb|EDP88722.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           10399]
 gi|169654137|gb|EDS86830.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|184210554|gb|EDU07597.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|217393616|gb|EEC33637.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225928234|gb|EEH24268.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237504139|gb|ACQ96457.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           MSHR346]
 gi|238522301|gb|EEP85746.1| transcriptional regulator, LuxR family [Burkholderia mallei GB8
           horse 4]
 gi|242138032|gb|EES24434.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|243061251|gb|EES43437.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20]
 gi|254216975|gb|EET06359.1| sensory box transcriptional regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 181

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    +  GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|325923039|ref|ZP_08184737.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546480|gb|EGD17636.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 235

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L+ +  G T+  +A  LGIS  TV  ++  I++K   K R+ A  YAV   +
Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVHAGL 233

Query: 246 V 246
            
Sbjct: 234 A 234


>gi|160888907|ref|ZP_02069910.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492]
 gi|270293670|ref|ZP_06199872.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479365|ref|ZP_07938499.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|156861806|gb|EDO55237.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492]
 gi|270275137|gb|EFA20997.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904439|gb|EFV26259.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 220

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           KD  LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  YA+
Sbjct: 149 KDDLLTTAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLGVNNAHEATKYAM 208

Query: 242 RNNIV 246
           +  IV
Sbjct: 209 KAGIV 213


>gi|157374068|ref|YP_001472668.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157316442|gb|ABV35540.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 209

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 33/49 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE++ L  ++EGK++  I+ +L IS  TV  ++ +++RK   K+R+
Sbjct: 152 LTPRELQILQQVAEGKSNRVISELLHISEGTVKVHVKNLLRKANAKSRT 200


>gi|325922114|ref|ZP_08183907.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC
           19865]
 gi|325547411|gb|EGD18472.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC
           19865]
          Length = 923

 Score = 39.3 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 36/58 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R  A+A A++  ++
Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRESALAQALQRGLL 909


>gi|325926289|ref|ZP_08187643.1| ATP-dependent transcriptional regulator [Xanthomonas perforans
           91-118]
 gi|325543323|gb|EGD14752.1| ATP-dependent transcriptional regulator [Xanthomonas perforans
           91-118]
          Length = 923

 Score = 39.3 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 36/58 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R  A+A A++  ++
Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRESALAQALQRGLL 909


>gi|239980938|ref|ZP_04703462.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291452801|ref|ZP_06592191.1| luxR family two component system response regulator [Streptomyces
           albus J1074]
 gi|291355750|gb|EFE82652.1| luxR family two component system response regulator [Streptomyces
           albus J1074]
          Length = 221

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S  TV NY++S + K   + R 
Sbjct: 150 AADAIAAGDSPLTAREAEVLELAADGAPVAEIAERAALSPGTVRNYLSSAVTKLGAENRH 209

Query: 235 GAI 237
            A+
Sbjct: 210 SAV 212


>gi|226364631|ref|YP_002782413.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243120|dbj|BAH53468.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 222

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L ++++G ++ +IA  L +S  TV N++ + +RK     R     YA+   
Sbjct: 161 KLTERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQG 220

Query: 245 I 245
           +
Sbjct: 221 L 221


>gi|148255499|ref|YP_001240084.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1]
 gi|146407672|gb|ABQ36178.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1]
          Length = 213

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE  CL W + GK++ + A I+ +SR TV  +  +  RK    T   A+A  +  +I
Sbjct: 151 LTQRERICLQWAARGKSALDTAEIINVSRRTVVFHTQNAKRKLGVATVQQAVAKGLAYDI 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|104781941|ref|YP_608439.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110928|emb|CAK15646.1| putative transcriptional regulator, luxR family [Pseudomonas
           entomophila L48]
          Length = 235

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L W + G+   +IA  LG+S  TV N++ +  R+    T + AI  A+ + +
Sbjct: 174 LSERERQVLAWTAAGQRQADIAATLGLSVRTVENHLRAARRRLGVATTAQAIRIALGSGV 233

Query: 246 V 246
           +
Sbjct: 234 L 234


>gi|329903746|ref|ZP_08273607.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548226|gb|EGF32926.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 215

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + LT I+ GKT  +IA  L +S  T++ Y + +++K   +  +    YA+RN++
Sbjct: 154 LSDREYQTLTMIASGKTVSDIASELVLSVKTISMYRSRLLQKMKLRHNAELTHYAIRNHL 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|302545230|ref|ZP_07297572.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462848|gb|EFL25941.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + 
Sbjct: 159 DLTERETEVLALIAQGLSNAEIATRLVVAEQTVKTHVGRILLKLGLRDRTQAAVFAYESG 218

Query: 245 IV 246
           +V
Sbjct: 219 LV 220


>gi|302518272|ref|ZP_07270614.1| two component response regulator [Streptomyces sp. SPB78]
 gi|318062320|ref|ZP_07981041.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079406|ref|ZP_07986738.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333028052|ref|ZP_08456116.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|302427167|gb|EFK98982.1| two component response regulator [Streptomyces sp. SPB78]
 gi|332747904|gb|EGJ78345.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 226

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 165 LTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 223


>gi|223940236|ref|ZP_03632096.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891123|gb|EEF57624.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 222

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 12/100 (12%)

Query: 150 KGRIILRDRLWEI------------GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           KGR    D+L E              L+A      F       GK+  L+ RE E L  +
Sbjct: 122 KGRSATGDKLLEALRDAGRGGSPLNSLIARKIVQHFHHQPSRSGKEHPLSVREREVLELL 181

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           S+G    EIA +LG++  TV  +  +I  K    +R+ A+
Sbjct: 182 SKGLPYKEIADMLGVNIETVRKHCHNIYEKLQVSSRTEAV 221


>gi|126462296|ref|YP_001043410.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103960|gb|ABN76638.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 226

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++ + L  I EG+ + +IA  L I+  TV  ++ +IMRK   ++R+ A+
Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210


>gi|94312507|ref|YP_585717.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93356359|gb|ABF10448.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 228

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 164 LLAAYQA----NMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGI 212
           LLAA QA     +F S  +  G   +       LT RE + L  I  G+ + +IAV LG+
Sbjct: 130 LLAAIQAVLAGRVFYSARIARGMAAQAVSPLDALTPRERDILHGIGRGQANKDIAVQLGV 189

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           S  TV  +  ++ RK   + R+  + YAV+ 
Sbjct: 190 SVRTVETHRLNLKRKLGIEGRAELVKYAVQQ 220


>gi|302543726|ref|ZP_07296068.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461344|gb|EFL24437.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 226

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  +++G+++ EIA  L ++ +TV  +++ I+ K   + R+ A  +A    
Sbjct: 161 ELTERENEVLVLVAQGRSNAEIAQHLVVAESTVKTHVSRILVKLGLRDRTQAAVFAYEAR 220

Query: 245 IV 246
           +V
Sbjct: 221 LV 222


>gi|229488432|ref|ZP_04382298.1| transcriptional regulator, LuxR family protein [Rhodococcus
           erythropolis SK121]
 gi|229323936|gb|EEN89691.1| transcriptional regulator, LuxR family protein [Rhodococcus
           erythropolis SK121]
          Length = 921

 Score = 39.3 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +  G    EIA  L +S NT+ +++ ++ RK    +R  A+A A R+N
Sbjct: 855 QLTKREMDVLVELGLGIPIGEIARRLFVSNNTLKSHLRALYRKLGAHSREEAVAAAHRHN 914

Query: 245 IV 246
           ++
Sbjct: 915 LL 916


>gi|218246417|ref|YP_002371788.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 216

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 16/73 (21%), Positives = 45/73 (61%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +++ +    + ELT  E++ +  +++G ++ EIA  L +S+ T+ +++++++ KT+   R
Sbjct: 144 EAHKIQVPSNVELTPTELKVIQLVAQGLSNREIASKLNVSQRTIESHVSNMLNKTSLHNR 203

Query: 234 SGAIAYAVRNNIV 246
           +    +A+ +N+ 
Sbjct: 204 TELARWAMESNMA 216


>gi|326799448|ref|YP_004317267.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326550212|gb|ADZ78597.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 209

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           G    Y  NM   Y   + KD  +L  RE E L       T  +IA  + +S  T++ Y 
Sbjct: 125 GFYNTYVTNM--CYQEMFNKDSIDLKDREREFLELACSDLTYQQIASKMFLSIKTIDGYR 182

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           A++  K   K+R G +  A+R N++
Sbjct: 183 AALFEKFQVKSRVGLVLEAIRQNVI 207


>gi|298241780|ref|ZP_06965587.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554834|gb|EFH88698.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 236

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LTGRE+E L  ++EG T+ EIA  L IS  TV  + +++M K
Sbjct: 172 LTGREMEVLKLVAEGSTNQEIADKLVISIKTVQAHRSNMMEK 213


>gi|167836859|ref|ZP_02463742.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 181

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    +  GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|134096765|ref|YP_001102426.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005191|ref|ZP_06563164.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909388|emb|CAL99500.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 211

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  I EG T+ +IA  L ++  TV NY+ +++ K   + R+ A A+  R  
Sbjct: 150 LTERERKVLELIGEGLTNRQIAERLFLAEKTVKNYVTAVLAKLGMERRTQAAAWVARRQ 208


>gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9902]
 gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9902]
          Length = 245

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 184 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRL 243

Query: 246 V 246
           V
Sbjct: 244 V 244


>gi|332978107|gb|EGK14844.1| nitrate/nitrite response regulator protein NarL [Psychrobacter sp.
           1501(2011)]
          Length = 219

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE++ +  I++G+++  I   LGIS +TV  ++  I+ KT  +TR     +AV
Sbjct: 159 LTSRELQVVKMIAKGQSNKMIGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAV 214


>gi|167719863|ref|ZP_02403099.1| sensory box transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei DM98]
          Length = 181

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    +  GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 242

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N++
Sbjct: 181 FTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHL 240

Query: 246 V 246
           V
Sbjct: 241 V 241


>gi|84502250|ref|ZP_01000398.1| transcriptional regulator, LuxR family/sensory box protein
           [Oceanicola batsensis HTCC2597]
 gi|84389610|gb|EAQ02329.1| transcriptional regulator, LuxR family/sensory box protein
           [Oceanicola batsensis HTCC2597]
          Length = 200

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           LT RE E ++ +S+G TS EIA+ L +S  TV  Y A +++K      SG
Sbjct: 132 LTRREREIISHLSDGLTSKEIAIKLELSHRTVEVYRAKLLKKFGVSNSSG 181


>gi|258654847|ref|YP_003204003.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558072|gb|ACV81014.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 233

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E   L  I EG T+ +IA  + ++  TV NY++S++ K   + R+ A  +A ++++
Sbjct: 172 LTEQERRVLALIGEGMTNRQIAEAMFLAEKTVKNYVSSLLAKLGLQRRTQAALFAAKHHL 231


>gi|237653295|ref|YP_002889609.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|237624542|gb|ACR01232.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 243

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L +I+ G+++ EIA  L ++ +TV  ++ +++RK    +R  A  +AV N 
Sbjct: 177 KLSPREREILRFIARGQSNKEIARALELAESTVKIHVQNMLRKLNLSSRVQAAVFAVENG 236

Query: 245 I 245
           +
Sbjct: 237 L 237


>gi|195978994|ref|YP_002124238.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975699|gb|ACG63225.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 199

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+E L  IS+  ++++I+  L ISR TV+ ++++I  K    +R GA+  A++  +
Sbjct: 139 LTESEIEILRLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIKLKL 198

Query: 246 V 246
           +
Sbjct: 199 I 199


>gi|182440789|ref|YP_001828508.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178469305|dbj|BAG23825.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 224

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  +++G ++ EIA  L ++  TV  ++  I++K   + R+ A  +A    
Sbjct: 156 ELTHRETEVLALVAQGLSNAEIAGELVVAEQTVKTHMGRILQKLQLRDRTQAAVFAYETG 215

Query: 245 IV 246
           +V
Sbjct: 216 LV 217


>gi|127514122|ref|YP_001095319.1| LuxR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639417|gb|ABO25060.1| transcriptional regulator, LuxR family [Shewanella loihica PV-4]
          Length = 220

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 155 KLTTRERTIIQLVSSGARNKEIADRLCISEHTVKAHISSIFRKTQSRNR 203


>gi|320333728|ref|YP_004170439.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755017|gb|ADV66774.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 210

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+S D+       LT +EV  L  I+ G  + EIA  LGI+  TV  +++ ++ K    +
Sbjct: 138 FRSPDMRE----HLTPKEVLTLQLIARGHANREIAQELGITEATVKTHVSRLLGKLGLTS 193

Query: 233 RSGAIAYAVRNNI 245
           R+ A  YA++  +
Sbjct: 194 RTQAALYALKAGL 206


>gi|315271266|gb|ACO45472.2| putative response regulator, NarL [Deinococcus deserti VCD115]
          Length = 231

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F ++      + +L+ RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    +
Sbjct: 153 FSTHTTPTPPEDDLSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGS 212

Query: 233 RSGAIAYAVRNN 244
           R+ A+ + ++  
Sbjct: 213 RTEAVLHGIKRG 224


>gi|296138093|ref|YP_003645336.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026227|gb|ADG76997.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 222

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++G ++ +IA  L +S  TV N++ + +RK     R     YA+ N 
Sbjct: 161 QLTPRETEVLRLVAKGLSAKQIATRLHLSHRTVENHVQATLRKLQLGNRVELARYALENG 220

Query: 245 I 245
           +
Sbjct: 221 L 221


>gi|293605159|ref|ZP_06687548.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292816415|gb|EFF75507.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 218

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G+ + +IA  LG+S  TV  +  +I RK     ++  I YAV N  
Sbjct: 158 LTQRERDVLRHIASGQANKQIAHALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVENRG 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|254293153|ref|YP_003059176.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254041684|gb|ACT58479.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC
           49814]
          Length = 248

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           KD +LT R++E L   + G+T  + A  LG+S   V  ++  I ++   +T S AI  A 
Sbjct: 177 KDHDLTKRQIEVLQAKANGQTDKQTADRLGVSVKAVEGHLTKIRKQMNARTTSQAIGLAR 236

Query: 242 RNNIV 246
              ++
Sbjct: 237 GKGLI 241


>gi|238026711|ref|YP_002910942.1| acylhomoserine lactone dependent transcriptional activator
           [Burkholderia glumae BGR1]
 gi|237875905|gb|ACR28238.1| Acylhomoserine lactone dependent transcriptional activator
           [Burkholderia glumae BGR1]
          Length = 241

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE   L W + GK+  EIA I GI   TV  ++A++++K    T   A+  A R
Sbjct: 176 LTLRERTVLKWAAMGKSYSEIADICGIRERTVKYHMANVVQKLDVSTAKQAVIVASR 232


>gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
          Length = 242

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N++
Sbjct: 181 FTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHL 240

Query: 246 V 246
           V
Sbjct: 241 V 241


>gi|163746352|ref|ZP_02153710.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Oceanibulbus indolifex HEL-45]
 gi|161380237|gb|EDQ04648.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Oceanibulbus indolifex HEL-45]
          Length = 251

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R++E L W+ +GKT+ +IA+++G++  TV  ++       + +T + A+  A   N
Sbjct: 186 LTRRQLEVLEWVGDGKTTQDIALLMGLTAATVEKHLRLAREALSVETTAQAVLKAAFAN 244


>gi|153802230|ref|ZP_01956816.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|124122254|gb|EAY40997.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
          Length = 214

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y    F+S+      D  LT RE++ L  +  G ++ +IA  L IS  TV +++  I
Sbjct: 136 LLHYYRYAFQSHQAQASVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193

Query: 225 MRKTATKTRSGAIAYAVRN 243
            +K   K R  AIA+  +N
Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212


>gi|330949863|gb|EGH50123.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 89

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE E L  + +G T+ EIA  L IS  TV ++++S++RK   +TR+  +A  V
Sbjct: 10  VTMREQEVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVRTRAELMARCV 65


>gi|322437524|ref|YP_004219614.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165417|gb|ADW71120.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 216

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E +  +++G TS E A  L IS  TV ++  +I RK +  + +  + YA+RN 
Sbjct: 152 QLTVREREVMRLLADGMTSKEAAARLCISTRTVESHRINISRKMSFGSVADLVRYAIRNG 211

Query: 245 I 245
           I
Sbjct: 212 I 212


>gi|317489677|ref|ZP_07948181.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911271|gb|EFV32876.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 534

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +DF LT RE E L +I+ G+++  IA  L +S NT+  +   I+ KT   ++   I
Sbjct: 471 AEDFSLTRREAELLPFIARGRSARVIADALFVSENTIRTHTRRILEKTDLHSKQQVI 527


>gi|167629282|ref|YP_001679781.1| two-component transcriptional response regulator, putative
           [Heliobacterium modesticaldum Ice1]
 gi|167592022|gb|ABZ83770.1| two-component transcriptional response regulator, putative
           [Heliobacterium modesticaldum Ice1]
          Length = 464

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E    I+EG TS EIA    IS NTV ++I +I RK    T+
Sbjct: 403 LTEREYEIALMIAEGLTSREIAEKTFISLNTVKSHIKNIYRKIGVSTK 450


>gi|159037407|ref|YP_001536660.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916242|gb|ABV97669.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 230

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ++ G  + EIA  L +   TV  +++ ++ K   + R  A+ +A  + 
Sbjct: 165 ELTPREHEVLVLVASGANNAEIAAALRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHG 224

Query: 245 IV 246
           +V
Sbjct: 225 VV 226


>gi|153008009|ref|YP_001369224.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
 gi|151559897|gb|ABS13395.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
          Length = 277

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E   L W +EGKT  EI++ILG++  TV  ++ +   K     ++ A+  A+R++
Sbjct: 15  LTSQERIVLYWTAEGKTRWEISIILGVAETTVVTHLRNSRIKLGATNKTHAVVEAIRHS 73


>gi|78049092|ref|YP_365267.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037522|emb|CAJ25267.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 923

 Score = 39.3 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 36/58 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R  A+A A++  ++
Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRESALAQALQRGLL 909


>gi|84503539|ref|ZP_01001590.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84388029|gb|EAQ01077.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 196

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           F LT REVE +  I+ G ++ EIA  LG+   TV  ++ ++ RK   + R+ A
Sbjct: 134 FSLTPREVEVVRGIAAGYSNKEIARELGVQEVTVKLHVKTLSRKLEARNRTHA 186


>gi|150389353|ref|YP_001319402.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949215|gb|ABR47743.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 220

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L+ RE+E    + EG  + EIA  L I++ T  NYI+SI  K   + R+ A+ +
Sbjct: 160 KLSEREIEIAKLMLEGLNNKEIASELFITQGTAKNYISSIYSKIGVRDRTNAVLF 214


>gi|325918348|ref|ZP_08180482.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325535427|gb|EGD07289.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 922

 Score = 39.3 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 37/58 (63%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S+NTV  ++ ++ RK   ++R  A+A A++  ++
Sbjct: 851 RELEVLAQLARGYSNKQIARHLHLSQNTVKFHLKNLYRKLDARSRESALAQALQRGVL 908


>gi|322377956|ref|ZP_08052444.1| putative DNA-binding response regulator VraR [Streptococcus sp.
           M334]
 gi|321281132|gb|EFX58144.1| putative DNA-binding response regulator VraR [Streptococcus sp.
           M334]
          Length = 201

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+  L  I +  ++++IA  L +SR TV+ ++++I  K    +R GA+  A+R N+
Sbjct: 139 LTDMELSVLELIVKEYSNEKIANSLFVSRRTVDTHVSNICSKLGVTSRVGAVREAIRLNL 198

Query: 246 V 246
           V
Sbjct: 199 V 199


>gi|320450528|ref|YP_004202624.1| two component transcriptional regulator, LuxR family [Thermus
           scotoductus SA-01]
 gi|320150697|gb|ADW22075.1| two component transcriptional regulator, LuxR family [Thermus
           scotoductus SA-01]
          Length = 209

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L  +++G +  E+A  L IS  TV  Y    M K   K+RS  + YAV+  
Sbjct: 147 LSPREEEVLRLLAKGLSHKEVAEHLSISEKTVATYRERGMEKLGLKSRSDLLRYAVKRG 205


>gi|298244378|ref|ZP_06968184.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551859|gb|EFH85724.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 212

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ +++  L ++++G +S EIA  L +S NT+  Y+  I+ +   K R+ A+  AV++ 
Sbjct: 152 LSSQQLVILRFVAQGLSSREIAKKLYLSENTIKGYVQEILHRLNVKNRTEAVMVAVKHG 210


>gi|297160220|gb|ADI09932.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 213

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +++G ++ EIA  L IS  TV  ++  + RK   K R+ A+A A    I
Sbjct: 152 LSAREREVLELVAKGTSNREIARELFISEATVKTHLTHLYRKLGVKDRAAAVAVAYDRGI 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|297201415|ref|ZP_06918812.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713823|gb|EDY57857.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K+ E LTGRE E +  +++G ++ EIA  L +S  TV  ++  I+ K   + R   +  A
Sbjct: 152 KELERLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLA 211

Query: 241 VRNNIV 246
               +V
Sbjct: 212 YETGLV 217


>gi|196229817|ref|ZP_03128681.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226143|gb|EDY20649.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 210

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I +G ++ EIA  L I+  TV  ++ +I+ K   + R+ A   A++  
Sbjct: 146 ELSEREIEVLQRIVKGLSNKEIAGHLFITEATVKLHVGNILTKLGVQDRTQASTVAIQRG 205

Query: 245 IV 246
           IV
Sbjct: 206 IV 207


>gi|333027714|ref|ZP_08455778.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332747566|gb|EGJ78007.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 222

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A    +
Sbjct: 157 LTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|284042075|ref|YP_003392415.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Conexibacter woesei DSM 14684]
 gi|283946296|gb|ADB49040.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Conexibacter woesei DSM 14684]
          Length = 758

 Score = 39.3 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 30/56 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LTG E+  L +++   T  EIA  L ISRNT      SI RK    +RS A+  AV
Sbjct: 683 LTGAEIRLLPYLATHLTFPEIAGRLFISRNTAKTEAISIYRKLGASSRSEAVERAV 738


>gi|260430667|ref|ZP_05784639.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418108|gb|EEX11366.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157]
          Length = 204

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           + + ++   +G ++A Q N     D H     +LT RE + L  ++EGK++ EIA  L +
Sbjct: 117 MAMGEQYLPVGFMSAEQPN-----DTHPMAK-KLTERERQVLKGLTEGKSNKEIARDLDL 170

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  T+  ++ ++ RK     R+ A A A R
Sbjct: 171 SEPTIKLHVKTLYRKVGVSNRTQA-AMAAR 199


>gi|148654853|ref|YP_001275058.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148566963|gb|ABQ89108.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 227

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ELT RE+E L  I+EG  + EIA  L I+ NT   ++++I+ K     R
Sbjct: 153 ELTSRELEILQLIAEGLGNREIAARLDITYNTAMKHVSNILAKLKVSNR 201


>gi|21230300|ref|NP_636217.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769706|ref|YP_244468.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992921|ref|YP_001904931.1| Putative transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21111849|gb|AAM40141.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575038|gb|AAY50448.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734681|emb|CAP52891.1| Putative transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 235

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L+ +  G T+  +A  LGIS  TV  ++  I++K   K R+ A  YAV   +
Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVHAGL 233

Query: 246 V 246
            
Sbjct: 234 A 234


>gi|332558318|ref|ZP_08412640.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides WS8N]
 gi|332276030|gb|EGJ21345.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides WS8N]
          Length = 226

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++ + L  I EG+ + +IA  L I+  TV  ++ +IMRK   ++R+ A+
Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210


>gi|295394810|ref|ZP_06805025.1| LuxR family DNA-binding response regulator [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972406|gb|EFG48266.1| LuxR family DNA-binding response regulator [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 204

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G T+ EIA  L IS+ TV  ++  I  K     R+ A+A A    +
Sbjct: 143 LSARELEILQAVATGHTNKEIAQELFISQATVKTHLVHIFDKLGVDNRTSAVAKAREQQL 202

Query: 246 V 246
           +
Sbjct: 203 I 203


>gi|207722498|ref|YP_002252934.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2]
 gi|206587679|emb|CAQ18261.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2]
          Length = 252

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E    I +G+++ EIA ++  S +TV +Y++SIM KT  + R
Sbjct: 183 LTEREREVALLIGQGRSNAEIAQVVCRSESTVKHYLSSIMDKTGCENR 230


>gi|163755204|ref|ZP_02162324.1| response regulator [Kordia algicida OT-1]
 gi|161324624|gb|EDP95953.1| response regulator [Kordia algicida OT-1]
          Length = 213

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  I++ K + EIA +L IS NTV ++  ++  K    + S  + YA+++ 
Sbjct: 150 KLTPREIDILKLIAQNKKTKEIAELLFISVNTVQSHKKNLYSKLNIHSVSELVTYAIQHK 209

Query: 245 IV 246
            +
Sbjct: 210 FI 211


>gi|157377077|ref|YP_001475677.1| LuxR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319451|gb|ABV38549.1| transcriptional regulator, LuxR family [Shewanella sediminis
           HAW-EB3]
          Length = 221

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTKRERTIIQLVSSGARNKEIAHNLCISEHTVKAHISSIFRKTQSRNR 203


>gi|119025073|ref|YP_908918.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764657|dbj|BAF38836.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 243

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE   +   + G+T+ ++   LG+S NTV  Y    M K   KTR  AIA
Sbjct: 180 LSDRETAIIVRYARGQTTLQVGECLGLSENTVKTYTKRAMAKLGAKTRGQAIA 232


>gi|73748824|ref|YP_308063.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73660540|emb|CAI83147.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
          Length = 232

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A +A M K+ +      +E LT RE E L  +S+G T  EIA  L IS  TV  + A++M
Sbjct: 133 AIEAYMEKTAEATSLDPYETLTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMM 192

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK   + ++  + YA++  I+
Sbjct: 193 RKLDLRNQTQLLRYALQRGII 213


>gi|300694626|ref|YP_003750599.1| transcription regulator protein, luxr family [Ralstonia
           solanacearum PSI07]
 gi|299076663|emb|CBJ36001.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 252

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E    I +G+++ EIA ++  S +TV +Y++SIM KT  + R
Sbjct: 183 LTEREREVALLIGQGRSNAEIAQLVCKSESTVKHYLSSIMDKTGCENR 230


>gi|288803368|ref|ZP_06408801.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
 gi|288334188|gb|EFC72630.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
          Length = 198

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV
Sbjct: 129 KNKILSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAV 188


>gi|255324053|ref|ZP_05365178.1| transcriptional regulatory protein DegU [Corynebacterium
           tuberculostearicum SK141]
 gi|255298910|gb|EET78202.1| transcriptional regulatory protein DegU [Corynebacterium
           tuberculostearicum SK141]
          Length = 205

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L  +S G ++ E+A  L IS  TV  ++  I +K   +TR+ A+  A
Sbjct: 145 LSARELEILRALSSGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVA 199


>gi|256372733|ref|YP_003110557.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009317|gb|ACU54884.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 222

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G D  L+ RE + L  ++ G+T+ EIA  L IS  TV  ++A +  K     R+ A+
Sbjct: 138 GSDVVLSDRERQVLELVARGRTNVEIAEALAISEATVKTHLAHVFDKVGATNRTSAV 194


>gi|256829663|ref|YP_003158391.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578839|gb|ACU89975.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 219

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT----RSGAIAY 239
           LT RE++ +  I +GK S EIA IL IS  TV+ + ++I++K    T    R G + +
Sbjct: 155 LTPREIDVVKLIFKGKKSREIAEILAISVKTVDKHRSNILQKIGIHTFNELRQGGMYF 212


>gi|326330563|ref|ZP_08196870.1| two-component system, regulatory protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325951638|gb|EGD43671.1| two-component system, regulatory protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 219

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG +++EIA  L +  +TV +++A +M K   K+R  A  +A ++ +
Sbjct: 157 LTTRELDILLHLAEGMSNEEIAQALVLEVSTVKSHLARMMPKLGVKSRLQAAVWAYQSGL 216

Query: 246 V 246
           +
Sbjct: 217 I 217


>gi|323138697|ref|ZP_08073763.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
 gi|322396052|gb|EFX98587.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
          Length = 229

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  ++ GK   EIA IL IS  TV N    + RK   ++++  +  AV N +
Sbjct: 165 LNSREIEILRNLANGKDMAEIAYILKISYKTVANNCVLLKRKLGARSKADLLRIAVENKV 224


>gi|319784914|ref|YP_004144390.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170802|gb|ADV14340.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 908

 Score = 39.3 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE E L +++EG ++ +IA+ L +S  TV  ++ +I  K A   R  A+  A
Sbjct: 839 QLTQREAELLRYLTEGMSNRDIALALSVSETTVKWHLKNIFGKLAVTNRVQAVRAA 894


>gi|190349640|gb|ACE75883.1| quorum sensing response regulator [Serratia plymuthica]
          Length = 248

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E + W S GK+  EIA+ILGI   T+  +I + ++K        AI   V 
Sbjct: 179 FSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAIRLGVE 235


>gi|190576052|ref|YP_001973897.1| putative LuxR family two-component response regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190013974|emb|CAQ47614.1| putative LuxR family two-component response regulator
           [Stenotrophomonas maltophilia K279a]
          Length = 212

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REV  L  ++ G ++ EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+   I+
Sbjct: 155 REVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 212


>gi|294630195|ref|ZP_06708755.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833528|gb|EFF91877.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 207

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S  TV NY++S + K   + R 
Sbjct: 136 AADAISAGDSPLTAREAEVLELAADGAPVTEIAERAALSAGTVRNYLSSAVTKLGAENRH 195

Query: 235 GAIAYA 240
            A+  A
Sbjct: 196 AAVRLA 201


>gi|302531478|ref|ZP_07283820.1| two component system response regulator [Streptomyces sp. AA4]
 gi|302440373|gb|EFL12189.1| two component system response regulator [Streptomyces sp. AA4]
          Length = 225

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E+T RE E L  ++ G ++DEIA  L IS  T   +++ IM K   + R+  +  A  + 
Sbjct: 156 EVTEREREVLALVAGGLSNDEIAAHLVISAATARTHVSRIMTKIGARDRAQLVVLAYESG 215

Query: 245 IV 246
           +V
Sbjct: 216 LV 217


>gi|157368315|ref|YP_001476304.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320079|gb|ABV39176.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 248

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E + W S GK+  EIA+ILGI   T+  +I + ++K        AI   V 
Sbjct: 179 FSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAIRLGVE 235


>gi|119471494|ref|ZP_01613935.1| putative transcriptional regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
 gi|119445593|gb|EAW26878.1| putative transcriptional regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
          Length = 218

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 152 RIILRDRLW---EIGLLAAYQANMFKSYDVH--WGKDFE---LTGREVECLTWISEGKTS 203
           R++L D+LW   +I   A  +   F    +H     D E   LT RE   ++ +S G  +
Sbjct: 113 RLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSNGSKN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L IS +TV  ++ S  RKT  + R   +++A +N
Sbjct: 173 KEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212


>gi|146277185|ref|YP_001167344.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555426|gb|ABP70039.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 226

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++ + L  I EG+ + +IA  L I+  TV  ++ +IMRK   ++R+ A+
Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210


>gi|315295459|gb|EFU54787.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 153-1]
          Length = 230

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A    ++  I
Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRI 223

Query: 246 V 246
           +
Sbjct: 224 I 224


>gi|311106078|ref|YP_003978931.1| response regulator 7 [Achromobacter xylosoxidans A8]
 gi|310760767|gb|ADP16216.1| response regulator 7 [Achromobacter xylosoxidans A8]
          Length = 215

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G+ + +IA  LG+S  TV  +  +I RK     ++  I YAV N  
Sbjct: 155 LTQRERDVLRHIASGEANKQIAQALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVENRG 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|290475594|ref|YP_003468482.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus bovienii SS-2004]
 gi|289174915|emb|CBJ81716.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus bovienii SS-2004]
          Length = 211

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  ISEG T+ EIA  L IS  TV  +  ++++K  +++R  A    +R+
Sbjct: 147 KLTKRELDVLKEISEGMTNKEIADFLFISEETVKVHTRNLLKKLKSRSRLEATIIYLRH 205


>gi|300776299|ref|ZP_07086157.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300501809|gb|EFK32949.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 225

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +A + ++F++ D       EL+ RE + +  I +  T++EI   L IS  TV ++   I+
Sbjct: 147 SAKKKSLFETED-------ELSEREKDVVKLICQELTNNEIGEKLFISPRTVESHRQRIL 199

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K   K   G + YA+ NNI
Sbjct: 200 EKIGAKNTVGIVIYAIVNNI 219


>gi|26987312|ref|NP_742737.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           KT2440]
 gi|24981960|gb|AAN66201.1|AE016248_4 DNA-binding response regulator, LuxR family [Pseudomonas putida
           KT2440]
          Length = 258

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +L+ R++E    + +GKT+ +IA  LGI+ NTV  Y++ ++R T    R+
Sbjct: 189 KLSPRQLEVARLVGKGKTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 238


>gi|289643816|ref|ZP_06475923.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289506369|gb|EFD27361.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 115

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           VH  +   LT +E   L  I+EG T+ +IA  L ++  TV NY++S++ K   ++R+ A 
Sbjct: 48  VHDERLATLTEQERRILALIAEGLTNRQIANRLFLAEKTVKNYVSSLLAKLGLESRTQAA 107

Query: 238 AYAVR 242
            +A +
Sbjct: 108 VFATK 112


>gi|271964642|ref|YP_003338838.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507817|gb|ACZ86095.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 325

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +ELTGRE+E +T ++ G ++ +IA  L +S  TV  ++  I  K   ++R+
Sbjct: 259 YELTGREIEVITRVALGDSNPQIAAALVLSVRTVTTHLEHIFTKLGCESRT 309


>gi|257790215|ref|YP_003180821.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|325830433|ref|ZP_08163890.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|257474112|gb|ACV54432.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|325487900|gb|EGC90338.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 534

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +DF LT RE E L +I+ G+++  IA  L +S NT+  +   I+ KT   ++   I
Sbjct: 471 AEDFSLTRREAELLPFIARGRSARVIADALFVSENTIRTHTRRILEKTDLHSKQQVI 527


>gi|159900998|ref|YP_001547245.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894037|gb|ABX07117.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 213

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE   L  I  G ++ EIA  L ++  TV  Y+++I+ K A   R+ A  YA+++ 
Sbjct: 150 LTERERSVLDGIVGGLSNKEIARSLHLTEGTVKGYVSTILTKLAVADRTQAALYAIKHG 208


>gi|77463440|ref|YP_352944.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides 2.4.1]
 gi|16904149|gb|AAL30775.1|AF435819_1 response regulator [Rhodobacter sphaeroides]
 gi|77387858|gb|ABA79043.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 226

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++ + L  I EG+ + +IA  L I+  TV  ++ +IMRK   ++R+ A+
Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210


>gi|121603831|ref|YP_981160.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120592800|gb|ABM36239.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 210

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L A Q N  K    H     +L+ RE +    +++G+T+ +IA  L +S  TV+ Y   +
Sbjct: 132 LLAQQLNRPKDVAAHE----QLSEREFQVFLKLAKGETAGDIAKALSLSVKTVSTYRTRV 187

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           M K +  + S    YA++N ++
Sbjct: 188 MEKMSLASNSDLTYYALKNKLI 209


>gi|84684327|ref|ZP_01012229.1| DNA-binding response regulator, LuxR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668080|gb|EAQ14548.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 225

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT ++   L  I EGK + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A
Sbjct: 155 LTNQQARILQLICEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIA 209


>gi|296268935|ref|YP_003651567.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091722|gb|ADG87674.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 221

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA  L ++  TV  ++  ++ K   + R+ AI YA    +
Sbjct: 154 LTAREREVLILVAKGLSNQEIAERLHLAEATVKTHLGRVLAKLRLRDRAQAIVYAYETGL 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|251777972|ref|ZP_04820892.1| sigma-70, region 4 family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082287|gb|EES48177.1| sigma-70, region 4 family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 243

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E +  I+ G T+ EI + L IS  TV  ++ +I+RK   K R   + +   N+
Sbjct: 181 KLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRLEVVIFCKSNS 240

Query: 245 I 245
           +
Sbjct: 241 M 241


>gi|241763752|ref|ZP_04761799.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241366971|gb|EER61367.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 208

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 173 FKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           F  Y     +D    +LTGRE + L  I  G+ + +IA  LGIS  TV  + A+IM K  
Sbjct: 130 FAGYQQAASRDALLSKLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLN 189

Query: 230 TKTRSGAIAYAVRNN 244
             T +  +  A+  N
Sbjct: 190 ANTVADLLKIALGQN 204


>gi|255039009|ref|YP_003089630.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
 gi|254951765|gb|ACT96465.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
          Length = 267

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +LT RE E L  I +GK S EI+ +L IS +TVN +   I+ K
Sbjct: 204 IKLTSREKEILGMIGKGKLSKEISALLDISVHTVNTHRQRILEK 247


>gi|239815151|ref|YP_002944061.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|319794387|ref|YP_004156027.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|239801728|gb|ACS18795.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
 gi|315596850|gb|ADU37916.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 210

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           + L +R+ E    A  Q     S D    K   LTGRE + L  I  G+ + +IA  LGI
Sbjct: 116 VTLVERMLEHARGAFTQHQQSASRDALLSK---LTGREAQVLERIVAGRLNKQIADDLGI 172

Query: 213 SRNTVNNYIASIMRKTATKT 232
           S  TV  + A+IM K    T
Sbjct: 173 SIKTVEAHRANIMEKLNANT 192


>gi|209964999|ref|YP_002297914.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
 gi|209958465|gb|ACI99101.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
          Length = 214

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT R+ + L  + EGK++ +IA  LG+S  TV  ++ ++MR    + R+ A+
Sbjct: 155 LTQRQRDVLRCLREGKSNKQIAYELGLSEGTVKIHVTAVMRSLGVRNRTQAV 206


>gi|197122484|ref|YP_002134435.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196172333|gb|ACG73306.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
          Length = 210

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E    ++  ++  EIA  L +S  TV+ Y + I+ K A ++ +  + YAVR+ 
Sbjct: 148 QLSPRELEIFLQLAAARSVSEIAGRLQLSVKTVSTYRSRILEKMALRSNAELMQYAVRHG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|170725332|ref|YP_001759358.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169810679|gb|ACA85263.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 209

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 33/49 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE++ L  ++EGK++  I+ +L IS  TV  ++ +++RK   K+R+
Sbjct: 152 LTPRELQILEQVAEGKSNRMISELLHISEGTVKVHVKNLLRKGHAKSRT 200


>gi|147669585|ref|YP_001214403.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|146270533|gb|ABQ17525.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 232

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A +A M K+ +      +E LT RE E L  +S+G T  EIA  L IS  TV  + A++M
Sbjct: 133 AIEAYMEKTAEATSLDPYETLTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMM 192

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK   + ++  + YA++  I+
Sbjct: 193 RKLDLRNQTQLLRYALQRGII 213


>gi|328882017|emb|CCA55256.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 237

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++ EIA  L +S  TV  ++ +++ K   + R+ A+  A  + +
Sbjct: 171 LTGREEEVLRLMATGLSNPEIAESLTVSLETVKTHVGNVLTKLGAQNRTHAVVIAYESGL 230

Query: 246 V 246
           V
Sbjct: 231 V 231


>gi|323968034|gb|EGB63445.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|327252458|gb|EGE64117.1| response regulator [Escherichia coli STEC_7v]
          Length = 215

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIAAVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|294628486|ref|ZP_06707046.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. e14]
 gi|292831819|gb|EFF90168.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. e14]
          Length = 231

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA
Sbjct: 158 LTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYA 212


>gi|260775603|ref|ZP_05884500.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608784|gb|EEX34949.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 215

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE++ L  +  G ++ +IA  L IS  TV +++  I +K + K R  AIA+A
Sbjct: 154 DLTSREIQILRCLKTGASNMQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWA 209


>gi|239944210|ref|ZP_04696147.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990666|ref|ZP_04711330.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447682|ref|ZP_06587072.1| two-component system regulator [Streptomyces roseosporus NRRL
           15998]
 gi|291350629|gb|EFE77533.1| two-component system regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 224

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E LT I+ G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + 
Sbjct: 158 DLTERETEVLTLIASGLSNAEIARQLIVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|237846560|gb|ACR22888.1| SpsR [Serratia plymuthica]
          Length = 248

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E + W S GK+  EIA+ILGI   T+  +I + ++K        AI   V 
Sbjct: 179 FSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHAIRLGVE 235


>gi|291298491|ref|YP_003509769.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567711|gb|ADD40676.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 134

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ GK++ EI   L ++ +T+  +     RK   + R+ A+A A R NI
Sbjct: 73  LSEREHQVLLGIAGGKSNAEIGRELYVTEDTIKTHARRAYRKLGARDRAHAVALAFRQNI 132

Query: 246 V 246
           +
Sbjct: 133 L 133


>gi|196232652|ref|ZP_03131504.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223414|gb|EDY17932.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 220

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG+ + ++   L IS  T   + A IM K    + +  + YA+RN +
Sbjct: 158 LTPREREILQLLAEGRKNRDVGKALNISVKTAETHRARIMAKLGIDSVADLVRYAIRNGL 217

Query: 246 V 246
           +
Sbjct: 218 I 218


>gi|254423092|ref|ZP_05036810.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190581|gb|EDX85545.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 212

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 168 YQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           YQ   F   DV        +  ELT RE++ L  + +G ++ +++  L IS  TV  ++ 
Sbjct: 124 YQGKRFIPADVAMKLAERIESDELTAREIDVLEMMVQGSSTAKLSEALHISEGTVKFHVN 183

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I++K     R+ A+  A+   IV
Sbjct: 184 NILQKLNAHDRTQAVVTALHRGIV 207


>gi|188590713|ref|YP_001921256.1| sigma-70, region 4 family [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500994|gb|ACD54130.1| sigma-70, region 4 family [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 243

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E +  I+ G T+ EI + L IS  TV  ++ +I+RK   K R   + +   N+
Sbjct: 181 KLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRLEVVIFCKSNS 240

Query: 245 I 245
           +
Sbjct: 241 M 241


>gi|170694246|ref|ZP_02885401.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170140986|gb|EDT09159.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 216

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ G+T  EIA  L +S  T++ Y   I+ K      +  + YAVR+ +
Sbjct: 149 LSDREFDVLKRIAAGQTITEIAAELCVSAKTISTYKTRILEKMQMPHEAALVRYAVRHKL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|241554181|ref|YP_002979394.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240863487|gb|ACS61149.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 214

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I  G+++ EIA  LGI+  T   +  ++ +K    T +G I YA+ + I
Sbjct: 150 LTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGIATTAGLIRYALDHGI 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|158316741|ref|YP_001509249.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112146|gb|ABW14343.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 231

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I+EG T+ +IA  + ++  TV NY++S++ K   ++R+ A  +A +
Sbjct: 172 LTDQERRILALIAEGLTNRQIAARMFLAEKTVKNYVSSMLSKLGMESRTQAAVFATK 228


>gi|330966214|gb|EGH66474.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 92

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE + L  + +G T+ EIA  L IS  TV ++++S++RK+  KTR+  +A  V
Sbjct: 13  VTIREQDVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKSQVKTRAELMARCV 68


>gi|291528659|emb|CBK94245.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale M104/1]
          Length = 218

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           K ++++G+E+  +  ++EG  + EIA  L +S  TV NYI+ I+ K   + R+
Sbjct: 155 KSYDISGKELSIIELVAEGLNNREIADELYLSEGTVRNYISVILEKLQLRDRT 207


>gi|229079021|ref|ZP_04211573.1| Response regulator [Bacillus cereus Rock4-2]
 gi|228704435|gb|EEL56869.1| Response regulator [Bacillus cereus Rock4-2]
          Length = 212

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVI-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|284992816|ref|YP_003411370.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066061|gb|ADB76999.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 253

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE++ LT +S+GK++ +I   L +S +T+  +   + RK   K R+ A+A   R 
Sbjct: 190 VSLSMREMQVLTGMSQGKSNAQIGRELYLSEDTIKTHARRLFRKLGAKDRAEAVATGFRR 249

Query: 244 NIV 246
            ++
Sbjct: 250 GMM 252


>gi|160896554|ref|YP_001562136.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160362138|gb|ABX33751.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 223

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 164 LLAAYQ---ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           L+AA+Q   A   ++ +        L+ RE E L  I+ G ++ EIA  L I+  TV  +
Sbjct: 138 LVAAFQSQGAPEPQAPEPDEAPASPLSPREEEVLVQIARGASNKEIARTLDIAETTVKIH 197

Query: 221 IASIMRKTATKTRSGAIAYA 240
           +  I+RK    +R  A  YA
Sbjct: 198 VQHILRKLGLSSRVQAAVYA 217


>gi|158422196|ref|YP_001523488.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158329085|dbj|BAF86570.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 223

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 35/52 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++V  L  ++EG+ + +IA  LG+S  TV  ++++I++K   ++R+ A+
Sbjct: 156 LTPQQVRVLMMLAEGRLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAV 207


>gi|120611131|ref|YP_970809.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|326317560|ref|YP_004235232.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|120589595|gb|ABM33035.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
 gi|323374396|gb|ADX46665.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 208

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LTGRE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  N
Sbjct: 145 KLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIALGQN 204


>gi|110634204|ref|YP_674412.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285188|gb|ABG63247.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 310

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LTGRE E L+ + EG+++ EIA  LGIS  TV  + +  M K    T    I  A+  N
Sbjct: 250 LTGREQEVLSLVLEGRSNKEIAKQLGISHRTVEIHRSRAMAKYNATTAMQLIRRAMIEN 308


>gi|148260734|ref|YP_001234861.1| response regulator receiver protein [Acidiphilium cryptum JF-5]
 gi|146402415|gb|ABQ30942.1| response regulator receiver protein [Acidiphilium cryptum JF-5]
          Length = 267

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G DF LT R+      + +GK +  IA  LG+S +TV  +I +IMRK     R+ A+
Sbjct: 196 GDDF-LTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMRKIGATNRTQAV 251


>gi|186682719|ref|YP_001865915.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465171|gb|ACC80972.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 211

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I++GK + +I+ +L I+ +TV  +  +I  K     R+ A+  A+   
Sbjct: 148 ELSDRELEVLRLIAKGKNNQQISNVLNIAESTVRFHTNNIFGKLNVSDRTQALVTALNRG 207

Query: 245 IV 246
           IV
Sbjct: 208 IV 209


>gi|309792814|ref|ZP_07687256.1| regulatory protein LuxR [Oscillochloris trichoides DG6]
 gi|308225126|gb|EFO78912.1| regulatory protein LuxR [Oscillochloris trichoides DG6]
          Length = 464

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ RE E L  ++ G ++ +IA  L IS NTV  ++ +I  KT   +R+ A  YA+ +  
Sbjct: 7   ISEREREILKLVATGASNQQIAQQLNISVNTVKVHVRNIFSKTGVMSRTEATIYAINHGF 66

Query: 246 V 246
           V
Sbjct: 67  V 67


>gi|294791142|ref|ZP_06756299.1| putative two-component system response regulator [Scardovia
           inopinata F0304]
 gi|294457613|gb|EFG25967.1| putative two-component system response regulator [Scardovia
           inopinata F0304]
          Length = 214

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I +G T+ E+A  L I+  +   Y++ IM K    +R+  + +A  N +
Sbjct: 154 LTKREKETLILIGKGMTNAELAQELFITETSARTYVSRIMAKLNISSRAQLVIFAYENGL 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|289663521|ref|ZP_06485102.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 235

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L+ +  G T+  +A  LGI+  TV  ++  I++K   K R+ A  YAV++ +
Sbjct: 174 LSKRERQVLSLLPRGLTNATLAAELGIAPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233

Query: 246 V 246
            
Sbjct: 234 A 234


>gi|260426271|ref|ZP_05780250.1| transcriptional regulatory protein DegU [Citreicella sp. SE45]
 gi|260420763|gb|EEX14014.1| transcriptional regulatory protein DegU [Citreicella sp. SE45]
          Length = 214

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G   +LT RE   L  +++GK++ E+A  L IS  TV  +  +I RK    + +G  
Sbjct: 139 VMTGGREQLTNREQMVLLQLAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLT 198

Query: 238 AYAVRNNIV 246
            YA+ + ++
Sbjct: 199 RYALEHGVL 207


>gi|302518606|ref|ZP_07270948.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302427501|gb|EFK99316.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 226

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A    +
Sbjct: 161 LTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGL 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|296139697|ref|YP_003646940.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027831|gb|ADG78601.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 229

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I+EG  + +IA  L +S +TV  +I ++  K   + R+ A+ YA   
Sbjct: 161 VDLTPRETEVLQLIAEGLANRDIAARLFVSESTVKTHINNLFAKAHLRDRAHAVRYAFDT 220

Query: 244 NI 245
            I
Sbjct: 221 GI 222


>gi|160883312|ref|ZP_02064315.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483]
 gi|156111296|gb|EDO13041.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483]
          Length = 233

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 163 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 222

Query: 243 NNIV 246
             IV
Sbjct: 223 AGIV 226


>gi|27802474|gb|AAO21112.1| TraR [Rhizobium leguminosarum bv. viciae]
          Length = 234

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE  CL W + GK++ E A++ GI+  TV +Y+     K    T    +A A  + +
Sbjct: 174 LSPREAMCLMWAARGKSAPETAMLTGINPRTVQHYLDKAREKLEAATVPQLVAIAKDHGL 233

Query: 246 V 246
           V
Sbjct: 234 V 234


>gi|84497905|ref|ZP_00996702.1| regulatory protein, LuxR:Response regulator receiver [Janibacter
           sp. HTCC2649]
 gi|84381405|gb|EAP97288.1| regulatory protein, LuxR:Response regulator receiver [Janibacter
           sp. HTCC2649]
          Length = 218

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           L+ RE+  L  + +GK + EIA  L IS+NTV N+I +I  K    +R
Sbjct: 151 LSDRELGVLQLVGQGKGNKEIAAQLFISQNTVKNHIQNIRNKLNVGSR 198


>gi|307610855|emb|CBX00470.1| hypothetical protein LPW_21881 [Legionella pneumophila 130b]
          Length = 191

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE   L  +SEG T  + A  LGIS  TV  +I +  +K   KTR+  IA   R +
Sbjct: 132 LTPREYNTLLLLSEGYTDKQTAKKLGISPRTVEAHINNSKQKLGIKTRAELIAQFSRKH 190


>gi|222870082|gb|EEF07213.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 164 LLAAYQA----NMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGI 212
           LLAA QA     +F S  +  G   +       LT RE + L  I  G+ + +IAV LG+
Sbjct: 228 LLAAIQAVLAGRVFYSARIARGMAAQAVSPLDALTPRERDILHGIGRGQANKDIAVQLGV 287

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           S  TV  +  ++ RK   + R+  + YAV+ 
Sbjct: 288 SVRTVETHRLNLKRKLGIEGRAELVKYAVQQ 318


>gi|167646083|ref|YP_001683746.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167348513|gb|ABZ71248.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 244

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+ECL + + G+T  +    LGI+  TV  ++ ++  K     +  A+A AV   +
Sbjct: 180 LTAREIECLRFAAVGRTVADTGQALGITSRTVEFHLKNVAEKLDATNKVHAVAIAVSQGL 239

Query: 246 V 246
           V
Sbjct: 240 V 240


>gi|311745099|ref|ZP_07718884.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1]
 gi|126577613|gb|EAZ81833.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1]
          Length = 216

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT REVE L   S+G   ++I   L IS  TV  +I +I  K    ++  A+  AV
Sbjct: 150 EEITLTKREVEILEQTSKGLNYNQIGENLFISPKTVRKHIENIYHKLQVHSKLEAVQKAV 209

Query: 242 RNNIV 246
           +N I+
Sbjct: 210 KNRII 214


>gi|86159176|ref|YP_465961.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775687|gb|ABC82524.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 215

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +  G T  ++A  LGI+  TV  Y+  I  K    T++ A   AV   +
Sbjct: 153 LSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|332707622|ref|ZP_08427652.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332353630|gb|EGJ33140.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 216

 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I+ G ++ EIA  L IS  TV N++  I+ +   + R+ A   A
Sbjct: 151 ELTPREQEILRLIATGASNREIAQTLYISEKTVKNHVTHILSRLNVRDRTQAAILA 206


>gi|289432845|ref|YP_003462718.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT]
 gi|288946565|gb|ADC74262.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. GT]
          Length = 232

 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A +A M K+ +      +E LT RE E L  +S+G T  EIA  L IS  TV  + A++M
Sbjct: 133 AIEAYMEKTAEATSLDPYETLTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMM 192

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK   + ++  + YA++  I+
Sbjct: 193 RKLDLRNQTQLLRYALQRGII 213


>gi|238791031|ref|ZP_04634747.1| LuxR family transcription regulatory protein [Yersinia
           frederiksenii ATCC 33641]
 gi|238720875|gb|EEQ12599.1| LuxR family transcription regulatory protein [Yersinia
           frederiksenii ATCC 33641]
          Length = 104

 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L +I    +S EIA  L +S  T+NN I SI +K+    +   I Y     I
Sbjct: 27  FTKREWEVLFYILHAFSSGEIAKKLHLSSRTINNVIQSIYKKSDVTNKQQVIEYCYEKKI 86


>gi|296131053|ref|YP_003638303.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022868|gb|ADG76104.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 218

 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR--SGAIAYAVR 242
           LT RE + LT + +G ++ EIA  L +S  TV ++++ ++ K   +TR  +G +A  VR
Sbjct: 160 LTARERDVLTALGDGLSNAEIAARLVVSETTVKSHVSHVLAKLGVRTRLQAGVLAREVR 218


>gi|197123248|ref|YP_002135199.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220918037|ref|YP_002493341.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196173097|gb|ACG74070.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
 gi|219955891|gb|ACL66275.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 215

 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +  G T  ++A  LGI+  TV  Y+  I  K    T++ A   AV   +
Sbjct: 153 LSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|260906658|ref|ZP_05914980.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 201

 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L   + G +  EIA  L IS  TV N +++ + KTA + R+ A+  A  N 
Sbjct: 141 LTERETEVLHAAAGGGSVGEIAAQLFISSGTVRNRLSAAIGKTAARNRADAVRIARDNG 199


>gi|311697246|gb|ADQ00118.1| protein containing signal transduction response regulator, receiver
           region domains [marine bacterium HP15]
          Length = 222

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ + R VE L  +SEG+T+ EI+  L I+ NT+ +Y+  I       +R   +  AV  
Sbjct: 157 YQFSPRYVEILVLLSEGRTNHEISDELSINLNTLKSYLKDIYSILGVGSRMACVRKAVSE 216

Query: 244 NIV 246
            I+
Sbjct: 217 GII 219


>gi|308273005|emb|CBX29609.1| hypothetical protein N47_J05900 [uncultured Desulfobacterium sp.]
          Length = 229

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  + EG  + EIA  L IS  TV  + A+IM K    T S   AY++   +
Sbjct: 166 LTQREKEVLKLVGEGYKNLEIADYLCISVKTVEKHRANIMEKLDLHTASALTAYSIERGL 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|289523811|ref|ZP_06440665.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502955|gb|EFD24119.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 211

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L     G++S EIA  L IS  TV  ++ASI  K   + ++ A+  A++  +
Sbjct: 144 LSPREREVLLLAGRGESSKEIASKLYISERTVQTHLASIYDKLGARNKTEALLLALKYGV 203

Query: 246 V 246
           V
Sbjct: 204 V 204


>gi|255067698|ref|ZP_05319553.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca
           ATCC 29256]
 gi|255048039|gb|EET43503.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca
           ATCC 29256]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YAV++ +
Sbjct: 153 LTPRELEILGYLAAGHSNKVIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHKV 212


>gi|284035632|ref|YP_003385562.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283814925|gb|ADB36763.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 164 LLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +L+ Y   + K  D H    +  +L+ +E E L ++ +G +S EIA  L +S  TV+N+ 
Sbjct: 135 ILSGYMQQLKKG-DRHGRAERQSKLSNKEKEILQFLVDGMSSREIAEKLQLSVRTVDNHR 193

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           A++MR+   +  +  +  AV + ++
Sbjct: 194 ANMMRRLQVRNAAELVRMAVEDKLI 218


>gi|254390102|ref|ZP_05005323.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813469|ref|ZP_06772112.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441818|ref|ZP_08216552.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703810|gb|EDY49622.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326068|gb|EFG07711.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    
Sbjct: 155 ELTERETEVLALIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|295839668|ref|ZP_06826601.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|197698511|gb|EDY45444.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 239

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 178 LTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 236


>gi|254362590|ref|ZP_04978686.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           PHL213]
 gi|261491662|ref|ZP_05988244.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494219|ref|ZP_05990719.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153094197|gb|EDN75082.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           PHL213]
 gi|261310122|gb|EEY11325.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312677|gb|EEY13798.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 209

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L W++ G ++ +IA  L IS  TV  +I +++RK    +R  A
Sbjct: 149 LTDRELDVLQWLATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|111021467|ref|YP_704439.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820997|gb|ABG96281.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 546

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV  L  ++ GK++  +A  L +S  TV  ++++I  K    +RS A AYA  + +
Sbjct: 482 LTPREVCVLRLVAAGKSNRAVATELFLSEKTVARHLSNIFVKLGISSRSAATAYAYEHRL 541

Query: 246 V 246
           V
Sbjct: 542 V 542


>gi|304405086|ref|ZP_07386746.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345965|gb|EFM11799.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 227

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +AA   N F+       K  E LT RE++ L  +++GK++ EIA  L I   TV  ++ +
Sbjct: 143 VAAKMMNRFRQPQQTTAKAHEQLTEREMDVLKLVAQGKSNQEIADDLFIGIKTVKFHVTN 202

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
           I  K     R+ A  YA +  +
Sbjct: 203 IFSKLGVDDRTQAAIYAHKQGL 224


>gi|289641921|ref|ZP_06474076.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289508221|gb|EFD29165.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 371

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A   +++F+S     G D ELT RE E L  I+ G ++ EIA  L I+  TV  ++  I
Sbjct: 294 VARTASSVFRS---EGGLD-ELTAREREVLALIAGGASNQEIAEQLVITVGTVKTHVKHI 349

Query: 225 MRKTATKTRSGAIA 238
           + K     RS AIA
Sbjct: 350 LAKLGAVNRSQAIA 363


>gi|228900420|ref|ZP_04064648.1| Response regulator [Bacillus thuringiensis IBL 4222]
 gi|228907528|ref|ZP_04071385.1| Response regulator [Bacillus thuringiensis IBL 200]
 gi|228969652|ref|ZP_04130440.1| Response regulator [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228790061|gb|EEM37855.1| Response regulator [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228852020|gb|EEM96817.1| Response regulator [Bacillus thuringiensis IBL 200]
 gi|228859218|gb|EEN03650.1| Response regulator [Bacillus thuringiensis IBL 4222]
          Length = 195

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 90  DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 143

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 144 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 188


>gi|15806010|ref|NP_294711.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6458715|gb|AAF10563.1|AE001951_3 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 239

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    +R+ A+ + ++  
Sbjct: 173 DLSPRELEVLRVAASGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRG 232


>gi|83310446|ref|YP_420710.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945287|dbj|BAE50151.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 209

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +  D+  G    LT RE E L  I+ G  + EIA  LGI+  TV  +   IM+K     
Sbjct: 138 LEGSDMGGGS---LTAREREVLQLIARGHKNREIADELGIAIKTVETHRTKIMQKLDLHN 194

Query: 233 RSGAIAYAVRNNIV 246
            +   AYA+R  ++
Sbjct: 195 SAELAAYAIRRGLI 208


>gi|302538500|ref|ZP_07290842.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. C]
 gi|302447395|gb|EFL19211.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. C]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LTGRE E L ++  G ++ ++A  LG++  TV  +++SI+ +     R+ A
Sbjct: 159 LTGREREVLGYLGSGFSNGQVARRLGLAEGTVKAHVSSILARLGVDNRAAA 209


>gi|302339049|ref|YP_003804255.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301636234|gb|ADK81661.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM
           11293]
          Length = 290

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           + F LT RE E    + +  +  EIA  LGI+  TV  +++ I +KT ++ +SG
Sbjct: 230 EKFNLTKREAEVTELLLKSYSYKEIAFHLGITMPTVKTHVSRIYKKTGSQGKSG 283


>gi|258651449|ref|YP_003200605.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554674|gb|ACV77616.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 198

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +S+G+++ EI   L +S +TV  +   + RK   + R+ A+A   R   
Sbjct: 137 LTEREMQVLRGMSQGQSNGEIGRELFLSEDTVKTHARRLFRKLGARDRAQAVALGFRRGF 196

Query: 246 V 246
           V
Sbjct: 197 V 197


>gi|238023440|ref|YP_002907673.1| DNA-binding HTH domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237880493|gb|ACR32822.1| DNA-binding HTH domain-containing protein [Burkholderia glumae
           BGR1]
          Length = 235

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +A  A++F S  +  G    LT RE + L W  EG  + +I+  L IS +TVN +I  ++
Sbjct: 157 SAMTAHVFDSLGL--GAAISLTERERQVLRWTVEGLNAFDISEKLNISVSTVNWHIGKVL 214

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     +  A A AV  N++
Sbjct: 215 AKFGATNKVQAAARAVALNLL 235


>gi|254426902|ref|ZP_05040609.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
 gi|196193071|gb|EDX88030.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
          Length = 216

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT REVE L  ++ G  + EIA  L +S +T+  +I +I +K     R  A+ +A  
Sbjct: 155 EVSLTDREVEVLKVMATGAKNSEIASSLNLSPHTIKTHIYNIFKKINASNRLQAVNWAQE 214

Query: 243 N 243
           N
Sbjct: 215 N 215


>gi|194476803|ref|YP_002048982.1| two component transcriptional regulator, LuxR family protein
           [Paulinella chromatophora]
 gi|171191810|gb|ACB42772.1| two component transcriptional regulator, LuxR family protein
           [Paulinella chromatophora]
          Length = 254

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ ++
Sbjct: 192 DFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFVKTTTSSRTELVRYALEHS 251

Query: 245 IV 246
           +V
Sbjct: 252 LV 253


>gi|206970619|ref|ZP_03231571.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
 gi|206734255|gb|EDZ51425.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
          Length = 212

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVI-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|163755190|ref|ZP_02162310.1| hypothetical protein KAOT1_07218 [Kordia algicida OT-1]
 gi|161324610|gb|EDP95939.1| hypothetical protein KAOT1_07218 [Kordia algicida OT-1]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           KD ELT  ++ C        T  EIA  + +S  T++ Y  S+ +    K+R G + YA+
Sbjct: 156 KDTELTFLKLACTEM-----TYKEIAQEMCLSPKTIDGYRESLFKHFKVKSRIGLVLYAI 210

Query: 242 RNNIV 246
           RNN+V
Sbjct: 211 RNNMV 215


>gi|89894764|ref|YP_518251.1| hypothetical protein DSY2018 [Desulfitobacterium hafniense Y51]
 gi|89334212|dbj|BAE83807.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           D H  K   LT REVE L  +  G  S EIA  L I++ TV+ +I +I+ K   K+R
Sbjct: 162 DPHDDKMALLTSREVEILKLVVTGLRSKEIAENLRITKRTVDYHIGNILLKLEVKSR 218


>gi|329924379|ref|ZP_08279496.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328940730|gb|EGG37047.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 201

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L     G T+ +I+  L ++R TV NY++S ++K    +R  A+  A
Sbjct: 141 LSEREIEMLRLTKRGMTTGDISKALFLTRGTVRNYLSSAIQKLEADSRQQAVTIA 195


>gi|254496316|ref|ZP_05109202.1| two-component response regulator [Legionella drancourtii LLAP12]
 gi|254354477|gb|EET13126.1| two-component response regulator [Legionella drancourtii LLAP12]
          Length = 212

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           LT RE + +  ISEGK + EIA  L IS +TV  + A+IMRK   K
Sbjct: 140 LTERERQIIDLISEGKLNKEIAYELTISISTVEAHRANIMRKMQAK 185


>gi|288572830|ref|ZP_06391187.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568571|gb|EFC90128.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +++G ++ E+A  L IS+NTV+ +   IM K      +  I +A+R  +
Sbjct: 152 LSDREREVLALLAKGSSTKEVASSLHISKNTVDTHRRRIMEKLDCGNIAELIRFAIREGL 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|111022138|ref|YP_705110.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821668|gb|ABG96952.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 222

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L ++++G ++ +IA  L +S  TV N++ + +RK     R     YA+   +
Sbjct: 162 LTERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|289670915|ref|ZP_06491990.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 235

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L+ +  G T+  +A  LGI+  TV  ++  I++K   K R+ A  YAV++ +
Sbjct: 174 LSKRERQVLSLLPRGLTNATLAAELGIAPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233

Query: 246 V 246
            
Sbjct: 234 A 234


>gi|229069389|ref|ZP_04202679.1| Response regulator [Bacillus cereus F65185]
 gi|228713876|gb|EEL65761.1| Response regulator [Bacillus cereus F65185]
          Length = 212

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVI-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|229115274|ref|ZP_04244684.1| Response regulator [Bacillus cereus Rock1-3]
 gi|228668414|gb|EEL23846.1| Response regulator [Bacillus cereus Rock1-3]
          Length = 195

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 90  DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 143

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 144 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 188


>gi|254476925|ref|ZP_05090311.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
 gi|214031168|gb|EEB72003.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
          Length = 203

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L  +SEGK + EIA  L I+  TV  ++ S+ RK     R+ A   A
Sbjct: 143 LSPREIEMLRGLSEGKANKEIARDLNIAEPTVKLHMKSLYRKMKVSNRTQAALVA 197


>gi|254418119|ref|ZP_05031843.1| transcriptional regulator, LuxR family, putative [Brevundimonas sp.
           BAL3]
 gi|196184296|gb|EDX79272.1| transcriptional regulator, LuxR family, putative [Brevundimonas sp.
           BAL3]
          Length = 55

 Score = 38.9 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           W+S GK+S +I  ILG+S  TV++Y+  +  K   +TR
Sbjct: 2   WVSRGKSSGDIGAILGLSPRTVDSYLEKVCSKLRVRTR 39


>gi|163749108|ref|ZP_02156358.1| transcriptional regulator, LuxR family protein [Shewanella benthica
           KT99]
 gi|161331178|gb|EDQ02067.1| transcriptional regulator, LuxR family protein [Shewanella benthica
           KT99]
          Length = 221

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTKRERTIIQIVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNR 203


>gi|119717710|ref|YP_924675.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538371|gb|ABL82988.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 229

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E E  T ++ G ++ EIA ++ +S +TV  ++ +I+RK   + R   + +A  + +
Sbjct: 165 LTDKEREVFTAVARGLSNTEIAGLVFLSESTVKTHVGAILRKLGLRDRVQIVVFAYEHGL 224

Query: 246 V 246
           V
Sbjct: 225 V 225


>gi|23098617|ref|NP_692083.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776844|dbj|BAC13118.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 209

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++  +Q+   K +D       +LT RE E L  I EG T+ EI   L I   TV  ++++
Sbjct: 133 MMTNFQSQKKKLHD-------DLTEREREVLLCIGEGLTNQEIGEKLYIGVKTVKTHVSN 185

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K     R+ A  Y  RN ++
Sbjct: 186 ILSKLDVHDRTQAAVYVHRNKLL 208


>gi|87306600|ref|ZP_01088747.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
 gi|87290779|gb|EAQ82666.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE++ L  ++ G ++ EI   L IS  TV  ++ +I+RK     R+ A  +AVR
Sbjct: 147 DIPLTNREMQVLRHLALGLSNREIGRSLTISIETVKEHVQNILRKIDVTDRTQAAVWAVR 206

Query: 243 NNIV 246
             +V
Sbjct: 207 RGLV 210


>gi|317404098|gb|EFV84550.1| DNA-binding response regulator [Achromobacter xylosoxidans C54]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G  + +IA  LG+S  TV  +  +I RK     ++  I YAV N  
Sbjct: 158 LTQRERDVLRHIASGHANKQIAQALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVENRG 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|326318556|ref|YP_004236228.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375392|gb|ADX47661.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    +++G+T+ +IA  L +S  TV+ Y   +M K A  + S    YA++N 
Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKSLSLSVKTVSTYRTRLMEKMALSSNSDLTYYALKNK 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|205372767|ref|ZP_03225577.1| LuxR family transcriptional regulator [Bacillus coahuilensis m4-4]
          Length = 120

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           FELT RE E + ++  G ++ E+A  L IS++TV N++++I +
Sbjct: 75  FELTSREREIINYLLSGHSNIELAEALEISQHTVKNHVSNIFK 117


>gi|254776539|ref|ZP_05218055.1| response regulator receiver domain-containing protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 167

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L ++++G ++ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 104 LTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 163


>gi|229824576|ref|ZP_04450645.1| hypothetical protein GCWU000282_01920 [Catonella morbi ATCC 51271]
 gi|229785947|gb|EEP22061.1| hypothetical protein GCWU000282_01920 [Catonella morbi ATCC 51271]
          Length = 366

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 186 LTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT  E + L  I E   +T  E+AV++GISR+TV + I+S+M+K   + R+
Sbjct: 2   LTPNEAKVLALIEEDPFRTQQELAVLMGISRSTVASLISSLMQKHQLRGRA 52


>gi|226355486|ref|YP_002785226.1| response regulator NarL [Deinococcus deserti VCD115]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F ++      + +L+ RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    +
Sbjct: 140 FSTHTTPTPPEDDLSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGS 199

Query: 233 RSGAIAYAVRNN 244
           R+ A+ + ++  
Sbjct: 200 RTEAVLHGIKRG 211


>gi|120612503|ref|YP_972181.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120590967|gb|ABM34407.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    +++G+T+ +IA  L +S  TV+ Y   +M K A  + S    YA++N 
Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKSLSLSVKTVSTYRTRLMEKMALSSNSDLTYYALKNK 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|89891781|ref|ZP_01203283.1| DNA-binding response regulator, LuxR family [Flavobacteria
           bacterium BBFL7]
 gi|89515936|gb|EAS18601.1| DNA-binding response regulator, LuxR family [Flavobacteria
           bacterium BBFL7]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G   L D + E+      ++   KS  + + K   L+ RE+E L  +S GK + EI+ IL
Sbjct: 128 GETFLSDSIKEV---MNSKSKTGKSVTLRYKK---LSAREIEVLNLLSRGKRNKEISQIL 181

Query: 211 GISRNTVNNYIASIMRK 227
            I+  TV+ Y   +++K
Sbjct: 182 SINEKTVSTYKTRLLKK 198


>gi|89901412|ref|YP_523883.1| LuxR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89346149|gb|ABD70352.1| transcriptional regulator, LuxR family [Rhodoferax ferrireducens
           T118]
          Length = 206

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK-TATKT 232
           ELT RE E    + +G TS EI   L IS  TV  Y A +MRK TA+ T
Sbjct: 148 ELTAREREVAAHLMDGLTSKEIGKTLAISHRTVEIYRARLMRKYTASNT 196


>gi|23577991|ref|NP_702938.1| putative transcriptional regulatory protein [Corynebacterium
           efficiens YS-314]
 gi|259506139|ref|ZP_05749041.1| two component response regulator [Corynebacterium efficiens YS-314]
 gi|23494817|dbj|BAC19780.1| putative transcriptional regulatory protein [Corynebacterium
           efficiens YS-314]
 gi|259166260|gb|EEW50814.1| two component response regulator [Corynebacterium efficiens YS-314]
          Length = 225

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           FE LT RE+E L  +++ +T+ EIA  L I   TV  Y++ ++ K   + R G   +A  
Sbjct: 160 FEALTPRELEVLKRVAQAETNAEIANYLHIGSETVKTYVSRLISKIGVRDRVGLAVWAHT 219

Query: 243 NNIV 246
           + IV
Sbjct: 220 SGIV 223


>gi|302552511|ref|ZP_07304853.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470129|gb|EFL33222.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 203

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S + K   + R 
Sbjct: 132 AADAIAAGDSPLTVREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRH 191

Query: 235 GAIAYA 240
            A+  A
Sbjct: 192 AAVRLA 197


>gi|170720806|ref|YP_001748494.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169758809|gb|ACA72125.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 206

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 163 GLLAAYQANMFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGIS 213
            +LA Y  N F S  +H G +          ++  RE+  L   ++G+++ EIA  + +S
Sbjct: 116 AVLAGY--NYFPSQAIHTGHETAGTDLTLFRQVNDRELMVLQLFAQGRSNKEIAKGMFLS 173

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV+ Y   +M+K    T    I  A RN +V
Sbjct: 174 NKTVSTYKKRLMQKLQVDTLVDLIEMAKRNALV 206


>gi|296285195|ref|ZP_06863193.1| LuxR family transcriptional regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 186

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ ECL W++ GKT+ E A+IL IS  TV  ++     +     +   +  A+ + +
Sbjct: 114 LTDRQRECLLWVARGKTAAETAMILEISTETVIQHLKMARERYQVHCKQSLVVAALFDGL 173

Query: 246 V 246
           +
Sbjct: 174 I 174


>gi|290958642|ref|YP_003489824.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648168|emb|CBG71276.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G ++ EIA  L ++ +T+  +++ ++ K   + R+ A  +A    
Sbjct: 157 ELTDRETEVLVLIAQGLSNSEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEAR 216

Query: 245 IV 246
           +V
Sbjct: 217 LV 218


>gi|254499005|ref|ZP_05111705.1| hypothetical protein LDG_3083 [Legionella drancourtii LLAP12]
 gi|254351782|gb|EET10617.1| hypothetical protein LDG_3083 [Legionella drancourtii LLAP12]
          Length = 272

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           LT RE +CL W++ GK++  I+ I  +SR TV   IASI  K    T
Sbjct: 203 LTERERDCLWWLALGKSAQIISEINQVSRKTVERNIASIKEKLGCYT 249


>gi|76811819|ref|YP_332880.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|76581272|gb|ABA50747.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
          Length = 363

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 243 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 295


>gi|50120496|ref|YP_049663.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49611022|emb|CAG74467.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 245

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIA+IL I  +TV  +I ++++K        AI   V 
Sbjct: 180 FSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVE 236


>gi|330470665|ref|YP_004408408.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328813636|gb|AEB47808.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 338

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E L  ++ G+++ E+A  LGI   TV  +++ ++RK   + R  A+
Sbjct: 278 LTAREREVLLAVARGRSNAEVAADLGIGDETVKTHVSEVLRKLGCRDRVQAV 329


>gi|300723547|ref|YP_003712852.1| response regulator in two-component regulatory system with NarQ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630069|emb|CBJ90706.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus nematophila ATCC 19061]
          Length = 211

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE++ L  ISEG T+ EIA  L IS  TV  +  ++++K  +++R
Sbjct: 147 KLTKRELDVLKEISEGMTNKEIADFLFISEETVKVHTRNLLKKLKSRSR 195


>gi|295836763|ref|ZP_06823696.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           sp. SPB74]
 gi|295826194|gb|EFG64729.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           sp. SPB74]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           WG    L+ RE E +  I+ G  + +IA    I+  TV N+I  I  K  T TRS AIA
Sbjct: 144 WGG--PLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAKLQTTTRSEAIA 200


>gi|218513661|ref|ZP_03510501.1| two-component response regulator protein [Rhizobium etli 8C-3]
          Length = 115

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I YA+ + I
Sbjct: 42  LTPREHDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIRYALDHGI 101

Query: 246 V 246
            
Sbjct: 102 A 102


>gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 237

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+++++V
Sbjct: 177 TPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTETSSRTELVRYALQHHLV 236


>gi|330823094|ref|YP_004386397.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|329308466|gb|AEB82881.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 224

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 164 LLAAYQANMFKSYDV----HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           L+AA+Q+      D           +L+ RE E L  I+ G ++ EIA  L I+  TV  
Sbjct: 137 LVAAFQSQGAPEPDPGPMPQEDPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKI 196

Query: 220 YIASIMRKTATKTRSGAIAYA 240
           ++  I+RK    +R  A  YA
Sbjct: 197 HVQHILRKLGLTSRVQAAVYA 217


>gi|325964374|ref|YP_004242280.1| LuxR family transcriptional regulator [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470461|gb|ADX74146.1| two component transcriptional regulator, LuxR family [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 217

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE +    I+EG ++ EIA  L IS  TV+ + A++++K   + R     +A+R  +
Sbjct: 155 LTPREEQITKLIAEGNSTKEIADALKISIKTVDRHRANVLQKLGLRDRLDLTRFAIRTGL 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|288959032|ref|YP_003449373.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911340|dbj|BAI72829.1| two-component response regulator [Azospirillum sp. B510]
          Length = 228

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ REV+ L  +  G+++  IA  L I+ +TV  +  ++MRK   + R+ A  +A++N 
Sbjct: 162 ELSKREVQILRCLLAGQSNKAIARNLHITESTVKMHFKNVMRKINAQNRTQAAVWAIQNG 221

Query: 245 I 245
           +
Sbjct: 222 L 222


>gi|228996994|ref|ZP_04156626.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
 gi|228762735|gb|EEM11650.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
          Length = 191

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+ RE+E L  I+ G T+ EIA  L IS  TV  ++++I+ K     R+ A  +A
Sbjct: 122 ELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFA 177


>gi|330467719|ref|YP_004405462.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328810690|gb|AEB44862.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 211

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EIA  L ++  TV N+++ I+ K   + R+ A+  A+   I
Sbjct: 150 LTEREREVLRLVAHGYSNREIAGALFLAEGTVKNHVSMILTKLGARDRTNAVLRALHEGI 209

Query: 246 V 246
           +
Sbjct: 210 L 210


>gi|318057614|ref|ZP_07976337.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079841|ref|ZP_07987173.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           WG    L+ RE E +  I+ G  + +IA    I+  TV N+I  I  K  T TRS AIA
Sbjct: 144 WGG--PLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAKLQTTTRSEAIA 200


>gi|311896797|dbj|BAJ29205.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 229

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    +S+G ++ EIA  L +S  TV  ++  I+ K   + R  A+  A  N +
Sbjct: 163 LTDREREVFLLVSQGLSNGEIAARLVLSEATVKTHVGRILAKLGLRDRVQAVVLAYENGL 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|297196139|ref|ZP_06913537.1| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297153089|gb|EDY63356.2| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 897

 Score = 38.9 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+GRE + L  ++   +++EIA  L +S NTV  ++ S+ RK A   R+ A+  A
Sbjct: 836 KLSGRERDVLERLARMMSTEEIAADLYVSVNTVKTHLKSVYRKLAVSRRNEAVRRA 891


>gi|269102423|ref|ZP_06155120.1| transcriptional regulator VpsT [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162321|gb|EEZ40817.1| transcriptional regulator VpsT [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE + L  ++EGKT+ EIA  L ++  TV ++I ++ +K   K R  AI
Sbjct: 156 LTRREKQILGLLTEGKTNIEIAETLFVAETTVKSHIYNLYKKIDVKCRKEAI 207


>gi|311745274|ref|ZP_07719059.1| putative nitrate/nitrite DNA-binding response regulator
           [Algoriphagus sp. PR1]
 gi|126577803|gb|EAZ82023.1| putative nitrate/nitrite DNA-binding response regulator
           [Algoriphagus sp. PR1]
          Length = 214

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I +  T+ EIA  L ISR+TV ++  ++ +KT   +  G + +++ N +
Sbjct: 152 LSERELDVLQLIIQELTTQEIADKLFISRHTVESHKKNLFKKTDQNSLVGLVKFSISNQL 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|73538891|ref|YP_299258.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72122228|gb|AAZ64414.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 217

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E +  ++ G+++ EIA  LG++ +TV  ++ +I++K    +R     YAV   
Sbjct: 153 KLTAREREIVQGLTRGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVERG 212

Query: 245 I 245
           +
Sbjct: 213 L 213


>gi|326383391|ref|ZP_08205078.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197797|gb|EGD54984.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G +S +IA  L IS  TV N++ + +RK     R     YA+ + +
Sbjct: 157 LTQRETEVLRHVAKGLSSRQIATRLEISPRTVENHVGAALRKLQLGNRVELTRYAIEHGL 216


>gi|304406658|ref|ZP_07388313.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344191|gb|EFM10030.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 222

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  LT RE E L  I++G  + EIA  L IS  TV  ++++++ K   + R+    YA
Sbjct: 153 GADEGLTEREKEVLLLIADGMANKEIAEELHISIKTVKTHVSNLLMKCELEDRTQLAVYA 212

Query: 241 VRNN 244
            R  
Sbjct: 213 HRKG 216


>gi|237811617|ref|YP_002896068.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|237503468|gb|ACQ95786.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
          Length = 363

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 243 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 295


>gi|2791836|gb|AAC38403.1| transcriptional activator CarR [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 244

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +S G+T  E++ ILGIS  TV  +I + +RK        AI  A+  N+
Sbjct: 169 LSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|313496948|gb|ADR58314.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           BIRD-1]
          Length = 249

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +L+ R++E    +S+G T+ +IA  LGI+ NTV  Y++ ++R T    R+
Sbjct: 180 KLSPRQLEVARLVSKGNTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 229


>gi|295107220|emb|CBL04763.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 126

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE +    I+EG T+D+IA+ L IS +TV ++I +I  K     R+  +A
Sbjct: 67  LTSRERDVALLIAEGFTNDQIALRLCISLSTVKSHIQNIFAKAHVPNRTALVA 119


>gi|157960462|ref|YP_001500496.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845462|gb|ABV85961.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC
           700345]
          Length = 224

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT  + R
Sbjct: 156 LTNREKTIIQLVSSGARNKEIADKLCISEHTVKAHISSIFRKTQARNR 203


>gi|156743203|ref|YP_001433332.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156234531|gb|ABU59314.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 222

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + LT ++EG  +  IA  L +S  TV N ++ I +K     R+ A   AV+  
Sbjct: 152 QLTERERDILTLLAEGHDNRTIAQRLFLSEKTVGNRLSEIFQKLGVSNRTQAALVAVQRG 211

Query: 245 IV 246
           ++
Sbjct: 212 LI 213


>gi|109898606|ref|YP_661861.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109700887|gb|ABG40807.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   LT +++GK+S EIA IL IS  TV  +  ++  K   ++ +  I YAV + 
Sbjct: 152 KLTTREQLILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLAELICYAVDHG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|23015369|ref|ZP_00055147.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 209

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +  D+  G    LT RE E L  I+ G  + EIA  LGI+  TV  +   IM+K     
Sbjct: 138 LEGSDLGGGA---LTAREREVLQLIARGNKNREIADELGIAIKTVETHRTKIMQKLDLHN 194

Query: 233 RSGAIAYAVRNNIV 246
            +   AYA+R  ++
Sbjct: 195 SAELAAYAIRRGLI 208


>gi|319902814|ref|YP_004162542.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
 gi|319417845|gb|ADV44956.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
          Length = 220

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK +      A  YA++  I
Sbjct: 153 LTAAERSILKEIALGKTTKEIAAEKNLSFHTVNSHRKNIFRKLSVNNAHEATKYAMKAGI 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|307326932|ref|ZP_07606123.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887468|gb|EFN18463.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 195

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 31/43 (72%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +LT RE E L+ ++EG+++ EIA  L ++   VN +++SI++K
Sbjct: 131 QLTPREREVLSLMAEGRSNGEIARDLYVTEAAVNKHVSSILQK 173


>gi|229004659|ref|ZP_04162396.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228756547|gb|EEM05855.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
          Length = 191

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+ RE+E L  I+ G T+ EIA  L IS  TV  ++++I+ K     R+ A  +A
Sbjct: 122 ELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFA 177


>gi|269926239|ref|YP_003322862.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789899|gb|ACZ42040.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 225

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 186 LTGREVECLTWISEGKTSD-EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L+ +  G +S  ++A  LG++ +TV  +  +I+ K   K R+   AYA R N
Sbjct: 152 LTSREREILSLLVHGVSSTRDLAEKLGVTEHTVKFHFRNILSKLHLKNRAQVAAYAARYN 211

Query: 245 IV 246
            V
Sbjct: 212 AV 213


>gi|209963697|ref|YP_002296612.1| transcriptional regulatory protein FixJ [Rhodospirillum centenum
           SW]
 gi|209957163|gb|ACI97799.1| transcriptional regulatory protein FixJ [Rhodospirillum centenum
           SW]
          Length = 209

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           L+ REVE L  + EG+T+  I  +LGIS  TV  + A IM KT  
Sbjct: 146 LSEREVEVLGQVIEGRTNRAIGDVLGISIKTVEAHRARIMEKTGA 190


>gi|45658914|ref|YP_003000.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45602159|gb|AAS71637.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 223

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++EG +++ I  IL IS  TV  + A+IM+K      +  + YA+R  +
Sbjct: 161 LSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYAIRAGL 220

Query: 246 V 246
           +
Sbjct: 221 I 221


>gi|81428161|ref|YP_395161.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609803|emb|CAI54849.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 201

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE + L  ++ G ++ E+A  L +S  TV NY+++I+ K A   R  AI  A  N 
Sbjct: 141 LSQRETDVLQAVANGLSNKEVASQLFLSDGTVRNYMSTILSKLAASNRIEAIQIARHNG 199


>gi|327404685|ref|YP_004345523.1| LuxR family transcriptional regulator [Fluviicola taffensis DSM
           16823]
 gi|327320193|gb|AEA44685.1| transcriptional regulator, LuxR family [Fluviicola taffensis DSM
           16823]
          Length = 211

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE+E +  +  GK++ EI+V LG+S +TV  +  +  +K   K+ S  + + + N
Sbjct: 143 FNLTRREIEIVESLLNGKSTLEISVELGLSPHTVQTHRKNCFKKLKVKSLSELLLFEMEN 202

Query: 244 NI 245
            +
Sbjct: 203 QV 204


>gi|304385722|ref|ZP_07368066.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328226|gb|EFL95448.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284]
          Length = 201

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L   + G  + EIA  L +S  T+ NY+++I  K   + R  A+  A  N
Sbjct: 141 LTKRETEVLKVAASGMPTKEIAQQLFLSEGTIRNYLSAIFSKLGVRNRLEAVELAQNN 198


>gi|227115411|ref|ZP_03829067.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 245

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIA+IL I  +TV  +I ++++K        AI   V 
Sbjct: 180 FSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVE 236


>gi|169827392|ref|YP_001697550.1| DNA-binding response regulator DegU [Lysinibacillus sphaericus
           C3-41]
 gi|168991880|gb|ACA39420.1| DNA-binding response regulator DegU [Lysinibacillus sphaericus
           C3-41]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE   L  ++EGK   EI+  L IS+ ++   I  I  K + KTR  AI  A++N
Sbjct: 134 TKREYVILLMLAEGKDVQEISQNLNISKKSIKMNINKIYNKLSVKTRLQAIEKAIKN 190


>gi|37223253|gb|AAQ90229.1| LuxR [Aliivibrio fischeri]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           +LT RE ECL W  EGK+S +I+ ILG S   V
Sbjct: 184 DLTKREKECLAWACEGKSSWDISKILGCSEXXV 216


>gi|21223862|ref|NP_629641.1| regulatory protein [Streptomyces coelicolor A3(2)]
 gi|4467257|emb|CAB37582.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 1091

 Score = 38.9 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LTGRE + L  +S+G+T+ +IA  L IS  T + ++++I+ K     R  A A A R
Sbjct: 1020 LTGRERDVLRLVSDGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHR 1076


>gi|319648166|ref|ZP_08002383.1| YfiK protein [Bacillus sp. BT1B_CT2]
 gi|317389801|gb|EFV70611.1| YfiK protein [Bacillus sp. BT1B_CT2]
          Length = 230

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWI 197
           RIR  +  +F  G I+++D +     L   ++N+ +  +     D  L T RE+  +  I
Sbjct: 127 RIRDAIKSVF-NGHIVMQDII-----LDKIKSNLAEHKEAEPKIDESLFTERELGIMALI 180

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + G ++ EI+  L IS  T+ NYI+SI+ KT  + R+
Sbjct: 181 ARGLSNKEISKELFISEGTIANYISSILGKTGLEHRT 217


>gi|302131479|ref|ZP_07257469.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 222

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRN--TVNNYIASIMRKTATKTRSGAIAYAV 241
           + LT R++E L  I  GK++ EIA  LG+S +  TV  + + IM++      +G + + V
Sbjct: 154 YNLTARQLEILRLIVRGKSTREIASGLGLSLSIKTVETHRSQIMKRLQIFDVAGLVLFCV 213

Query: 242 RNNIV 246
           R  I+
Sbjct: 214 RERII 218


>gi|256786272|ref|ZP_05524703.1| response regulator [Streptomyces lividans TK24]
 gi|289770163|ref|ZP_06529541.1| response regulator [Streptomyces lividans TK24]
 gi|289700362|gb|EFD67791.1| response regulator [Streptomyces lividans TK24]
          Length = 233

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L  REV+ L  ++EG  + EIA  L  S  TV N +  +  +   + R+ A+AYA+R 
Sbjct: 171 LGLAPREVDVLRLVAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALRE 230

Query: 244 NIV 246
             +
Sbjct: 231 GYI 233


>gi|256751618|ref|ZP_05492494.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749568|gb|EEU62596.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 143

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 14/145 (9%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           +P E +C +F      I  P  +DN       D++ I+  +            + +  I 
Sbjct: 10  KPEEHYCDIFKQWY-CIATPLYIDNDIVGY-LDISTIKHNMA----------DEMIGFID 57

Query: 164 LLAAYQANMFK-SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LL     N +K   D+   +D E LT +++E +   ++G T   I++ LG+  +TV  + 
Sbjct: 58  LLVYKIVNEYKRETDLESQEDLEKLTDKQIEIIKKCAKGYTELAISMELGLKPSTVKYHK 117

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             I++K   K    AIA A++ N++
Sbjct: 118 KEIIKKLRVKNFQQAIAKAIKLNLI 142


>gi|226366304|ref|YP_002784087.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226244794|dbj|BAH55142.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 530

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  +++G+++ EIA  L I+  T  N++  +  K     R+ A   A+   +
Sbjct: 460 LTDREVEILRLVAQGRSNKEIAAELFIAEKTARNHVERVYAKLGVNNRTQAGLAAIDRGL 519

Query: 246 V 246
           V
Sbjct: 520 V 520


>gi|156744240|ref|YP_001434369.1| ATP-dependent transcription regulator LuxR [Roseiflexus castenholzii
            DSM 13941]
 gi|156235568|gb|ABU60351.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Roseiflexus castenholzii DSM 13941]
          Length = 1021

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE++ L  ++ G+T  EIA  L I+ +TV ++I  I  K   + R+ A A A
Sbjct: 960  LTAREIQVLRLLATGRTDQEIATSLVIAVSTVRSHIKRIYAKINARNRTQAAARA 1014


>gi|182438031|ref|YP_001825750.1| LuxR family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|117676049|dbj|BAF36640.1| putative LuxR-family transcriptional regulator [Streptomyces
           griseus]
 gi|178466547|dbj|BAG21067.1| putative LuxR-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 400

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +ELT RE E   +I+ G  + EIA  L +S +TV ++I ++  K    +R 
Sbjct: 301 YELTDRETEVTQFIARGLPTGEIAAQLHLSPHTVRDHIKAVFEKVGVSSRG 351


>gi|318060640|ref|ZP_07979363.1| two component system response regulator [Streptomyces sp. SA3_actG]
          Length = 226

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A    +
Sbjct: 161 LTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGL 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|323345593|ref|ZP_08085816.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323093707|gb|EFZ36285.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 318

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 251 LSDREKDVIVSLVQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           +
Sbjct: 311 I 311


>gi|307331390|ref|ZP_07610509.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306882949|gb|EFN14016.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 201

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L + ++G+ S +IA  L +S  TV NY+ S + K   + R  AI  A
Sbjct: 141 LTPRELEVLRFAAKGEESAQIAAKLFLSVGTVRNYLTSAVTKLDARNRVDAIRIA 195


>gi|298483763|ref|ZP_07001936.1| transcriptional regulator [Bacteroides sp. D22]
 gi|295087553|emb|CBK69076.1| transcriptional regulator [Bacteroides xylanisolvens XB1A]
 gi|298270057|gb|EFI11645.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 233

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 163 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 222

Query: 243 NNIV 246
             IV
Sbjct: 223 AGIV 226


>gi|256377110|ref|YP_003100770.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921413|gb|ACU36924.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 223

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E +  ++ G+T+DE+A  L +   TV  ++ +  RK A + R    A+A R  +
Sbjct: 159 LTERELEVVRLVALGRTNDEVAGELHLGVATVKTHLGNAQRKLAARNRVEVAAWAWRTGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|254389987|ref|ZP_05005209.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813922|ref|ZP_06772565.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703696|gb|EDY49508.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326521|gb|EFG08164.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 201

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S + K   + R 
Sbjct: 130 AADAISAGDSPLTAREAEVLALAADGAPIAEIAERASLSQGTVRNYLSSAVSKLGAENRH 189

Query: 235 GAIAYA 240
            A+  A
Sbjct: 190 TAVRLA 195


>gi|126652652|ref|ZP_01724813.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus sp. B14905]
 gi|169829490|ref|YP_001699648.1| germination protein [Lysinibacillus sphaericus C3-41]
 gi|299535535|ref|ZP_07048856.1| germination protein [Lysinibacillus fusiformis ZC1]
 gi|126590501|gb|EAZ84619.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus sp. B14905]
 gi|168993978|gb|ACA41518.1| Germination protein [Lysinibacillus sphaericus C3-41]
 gi|298728735|gb|EFI69289.1| germination protein [Lysinibacillus fusiformis ZC1]
          Length = 73

 Score = 38.9 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    +   KT+ +IA  LGIS  TV N+I++ ++K     RS A+   +R
Sbjct: 10  LTNREREIFALLLAEKTTRDIAEQLGISEKTVRNHISNTIQKLGVTNRSQALIELLR 66


>gi|91204579|emb|CAJ70807.1| similar to two component response regulator [Candidatus Kuenenia
           stuttgartiensis]
          Length = 202

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           H  K+F   +L  RE E +  +    ++ EIA+ L +S NT+  Y+  +MRK    +R+G
Sbjct: 135 HIAKNFRKWQLNRREQEIVQLLLGDHSNKEIALYLNLSCNTIKGYLKLLMRKLDVNSRTG 194

Query: 236 AIA 238
            I+
Sbjct: 195 IIS 197


>gi|330837581|ref|YP_004412222.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
 gi|329749484|gb|AEC02840.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
          Length = 528

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + L+ RE +   +I EGK++ EIA  L IS NTV  + + +  KT    RS
Sbjct: 448 YNLSPREQQVAKFIMEGKSNSEIAKELFISANTVKAHTSHVYEKTGATHRS 498


>gi|302058817|ref|ZP_07250358.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134506|ref|ZP_07260496.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 82

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE + L  + +G T+ EIA  L IS  TV ++++S++RK   KTR+  +A  V
Sbjct: 3   VTIREQDVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVKTRAELMARCV 58


>gi|297155595|gb|ADI05307.1| putative response regulator [Streptomyces bingchenggensis BCW-1]
          Length = 228

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +   +EGK++ EIA +L +S  TV  ++   M K   + R+  +  A ++ +
Sbjct: 159 LTAREREVMALAAEGKSNAEIAEVLFVSPLTVRTHVQRAMNKLGARDRAQLVVIAYQSGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|229084784|ref|ZP_04217044.1| Response regulator [Bacillus cereus Rock3-44]
 gi|228698531|gb|EEL51256.1| Response regulator [Bacillus cereus Rock3-44]
          Length = 212

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ ++ +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLLENKEAESKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI SI+ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSILGKTGLEHRTQIAIY 205


>gi|307154613|ref|YP_003889997.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984841|gb|ADN16722.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 211

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++GK++ EI+  L I+ +TV  ++ +I  K     R+ A+  A+   I
Sbjct: 149 LSNRELEVLRLIAKGKSNSEISQDLSIAESTVRFHLKNIFSKLDVGDRTQALVTALNRGI 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|239825932|ref|YP_002948556.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239806225|gb|ACS23290.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70]
          Length = 556

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE++ L  + +G ++ EIA  L IS +TV N+I +I +K     RS  IA   + N
Sbjct: 488 LTTREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 546


>gi|163802887|ref|ZP_02196775.1| excinuclease ABC subunit A [Vibrio sp. AND4]
 gi|159173294|gb|EDP58120.1| excinuclease ABC subunit A [Vibrio sp. AND4]
          Length = 214

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 38/59 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G ++ ++A  L +S +T+ ++++ I +K + K R  AIA+A +N
Sbjct: 153 DLTIRELQVLRCLQAGTSNIQMAEDLYVSESTIKSHLSQIFKKISVKNRVQAIAWADQN 211


>gi|163816627|ref|ZP_02207990.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759]
 gi|158447884|gb|EDP24879.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759]
          Length = 217

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 36/60 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +E++ +E++ +  +++G  + EIA  L +S  TV NYI+SI+ K   + R+    +  +N
Sbjct: 155 YEISSKEMDIIRLVADGLNNKEIASRLFLSEGTVRNYISSILDKLCLRDRTQLACFFYKN 214


>gi|126650269|ref|ZP_01722497.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592919|gb|EAZ86901.1| two-component response regulator [Bacillus sp. B14905]
          Length = 208

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ +E E L  +++G T+  IA  +G+++ TV NY++ +  K   ++R+ A+  A
Sbjct: 147 LSDKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLFVKLNVESRAEAVIVA 201


>gi|83593270|ref|YP_427022.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576184|gb|ABC22735.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 254

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            LT RE E L W + G    E+A  LG++  T  +++ +  RK   +T + A+A A+
Sbjct: 165 HLTNRERESLIWSARGCQVGEVADRLGVADRTAEHHLGAARRKLMARTTAQAVARAL 221


>gi|24216568|ref|NP_714049.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24197887|gb|AAN51067.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 223

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++EG +++ I  IL IS  TV  + A+IM+K      +  + YA+R  +
Sbjct: 161 LSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYAIRAGL 220

Query: 246 V 246
           +
Sbjct: 221 I 221


>gi|27380999|ref|NP_772528.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27354165|dbj|BAC51153.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 217

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 173 FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            +S DV        L+ +++  L  I EGK + +IA  L I+  TV  ++++I+RK    
Sbjct: 138 IQSADVELAARMATLSAQQLRILAMIVEGKLNKQIAGELDIAEQTVKGHVSTILRKLGVG 197

Query: 232 TRSGAIAYAVR 242
           +R+ A   A R
Sbjct: 198 SRTQAAVLAER 208


>gi|158318331|ref|YP_001510839.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113736|gb|ABW15933.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 249

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT REVE L  +++G ++ + A  LG+S  TV N++ +++ K   + R     +AVR  
Sbjct: 186 LTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLGKLQLRNRVELTRFAVREG 244


>gi|332306797|ref|YP_004434648.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174126|gb|AEE23380.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   LT +++GK+S EIA IL IS  TV  +  ++  K   ++ +  I YAV + 
Sbjct: 152 KLTTREQLILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLAELICYAVDHG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|312195087|ref|YP_004015148.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226423|gb|ADP79278.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 257

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L  +++G ++ + A  LG+S  TV N++ +++ K   + R     +AVR  
Sbjct: 185 LTAREIEVLRLVAKGLSAKDAAARLGVSPRTVQNHVHNVLSKLRLRNRVELTRFAVRAG 243


>gi|325982823|ref|YP_004295225.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
 gi|325532342|gb|ADZ27063.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L +I+ GKT  EI+  + +S  TV+ Y A ++ K      S  I YA++N +
Sbjct: 149 LSDREYQTLCFIAAGKTLSEISSEMFLSPKTVSVYRARLLEKLKLTNNSEIIRYAIKNKL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|213583489|ref|ZP_03365315.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 84

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 23  LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 73


>gi|52787684|ref|YP_093513.1| YfiK [Bacillus licheniformis ATCC 14580]
 gi|52350186|gb|AAU42820.1| YfiK [Bacillus licheniformis ATCC 14580]
          Length = 230

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWI 197
           RIR  +  +F  G I+++D +     L   ++N+ +  +     D  L T RE+  +  I
Sbjct: 127 RIRDAIKSVF-NGHIVMQDII-----LDKIKSNLAEHKEAEPKIDESLFTERELGIMALI 180

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + G ++ EI+  L IS  T+ NYI+SI+ KT  + R+
Sbjct: 181 ARGLSNKEISKELFISEGTIANYISSILGKTGLEHRT 217


>gi|326403930|ref|YP_004284012.1| LuxR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050792|dbj|BAJ81130.1| LuxR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 319

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G DF LT R+      + +GK +  IA  LG+S +TV  +I +IMRK     R+ A+
Sbjct: 248 GDDF-LTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMRKIGATNRTQAV 303


>gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
 gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
          Length = 245

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 184 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRL 243

Query: 246 V 246
           V
Sbjct: 244 V 244


>gi|291295044|ref|YP_003506442.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470003|gb|ADD27422.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 194

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L W+++G ++ EIA  + IS  TV +++  +  K   + R  A+  A
Sbjct: 132 LTAREQEVLQWMAQGLSTKEIARQMHISPETVKDHLLRLYEKLEARNRVEALERA 186


>gi|111225726|ref|YP_716520.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111153258|emb|CAJ65009.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 203

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L  I++G ++ + A  LG+S  TV N++ +++ K   + R     +A+R  
Sbjct: 140 LTAREIEVLRLIAKGLSARDAAARLGVSHRTVQNHVHNVLGKLQLRNRVELTRFALREG 198


>gi|261821119|ref|YP_003259225.1| LuxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|84620008|gb|ABC59302.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum]
 gi|261605132|gb|ACX87618.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIA+IL I  +TV  +I ++++K        AI   V 
Sbjct: 180 FSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVE 236


>gi|87199682|ref|YP_496939.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135363|gb|ABD26105.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 307

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +   LT RE E L W S GK++  I+ +L IS  TV  ++  I  K   +TR
Sbjct: 243 QKLGLTDREAEVLLWTSYGKSNATISEVLAISPRTVQKHLERIYEKLGIETR 294


>gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9605]
 gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9605]
          Length = 245

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +V
Sbjct: 185 TPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244


>gi|75908249|ref|YP_322545.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75701974|gb|ABA21650.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE E L  I+ G  + EIA  L IS  TV N++ +I+ + + + R+ A   A
Sbjct: 153 DLTPREKEVLRLIAAGANNKEIAQQLYISEGTVKNHVTNILNRLSLRDRTQAAIIA 208


>gi|326330415|ref|ZP_08196723.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951690|gb|EGD43722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 362

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE +    +  G T+ EIA  L +S  TV +++  I+RK     R+ AIA  VR  
Sbjct: 297 LTAREQDVFALLVSGATNPEIADRLTVSETTVKSHVKHILRKLRVSNRAEAIAKYVRGG 355


>gi|294646863|ref|ZP_06724484.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294808898|ref|ZP_06767627.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|292637808|gb|EFF56205.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294443940|gb|EFG12678.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 233

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 163 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 222

Query: 243 NNIV 246
             IV
Sbjct: 223 AGIV 226


>gi|271965253|ref|YP_003339449.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270508428|gb|ACZ86706.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 937

 Score = 38.9 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE E    ++ G+T+ EIA +L +S  TV  ++A+++RK   ++R+
Sbjct: 883 LSQREREVARLVALGRTNREIADVLFLSTRTVETHVATVLRKLGVRSRT 931


>gi|227544258|ref|ZP_03974307.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300910231|ref|ZP_07127691.1| transcriptional regulator [Lactobacillus reuteri SD2112]
 gi|227185771|gb|EEI65842.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300892879|gb|EFK86239.1| transcriptional regulator [Lactobacillus reuteri SD2112]
          Length = 223

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G    L+ RE E L  I  G T+ EIA+ + IS  TV  +   IM+K    + +  + Y
Sbjct: 155 LGNYIALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHAELLHY 214

Query: 240 AVRNNIV 246
           AV++ +V
Sbjct: 215 AVKHQLV 221


>gi|220909912|ref|YP_002485223.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866523|gb|ACL46862.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 245

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I +G ++ EIA  L I+  TV  ++ +I+ K     R+ A   A+R+ +
Sbjct: 184 LTQRELEVLELIVKGHSNAEIASKLYITVGTVKTHVRNILNKLCADDRTQAAVLALRSGL 243

Query: 246 V 246
           V
Sbjct: 244 V 244


>gi|254383353|ref|ZP_04998705.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194342250|gb|EDX23216.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E + L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  R
Sbjct: 157 LTDQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 213


>gi|192361195|ref|YP_001981681.1| response regulator receiver domain-containing protein [Cellvibrio
           japonicus Ueda107]
 gi|190687360|gb|ACE85038.1| Response regulator receiver domain protein [Cellvibrio japonicus
           Ueda107]
          Length = 209

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           LT +E E L  I +G +S EIA  LG+S  TV N+ A +M K   K+
Sbjct: 147 LTPKEQEILQGILQGLSSKEIAAGLGLSVRTVENHRARLMDKLHVKS 193


>gi|110637589|ref|YP_677796.1| response regulator, positive activator of uhpT transcription
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110280270|gb|ABG58456.1| response regulator, positive activator of uhpT transcription
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 318

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           DF LT RE E +  +++  T  EIA  L IS  TV  +I++I  KT    +S  +A
Sbjct: 254 DFNLTAREREIIHLLAKAYTYKEIAEELFISDRTVAKHISNIYSKTGVSQKSELLA 309


>gi|329938503|ref|ZP_08287928.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329302476|gb|EGG46367.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 230

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L+ ++ G ++ E+A  L ++  TV  ++ ++M K   + R+ A+A+A  + +
Sbjct: 166 LTARERDVLSQVARGLSNAEVAAELYVAEATVKTHLGNLMAKLHLRDRAQAVAFAYESGL 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|298247497|ref|ZP_06971302.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297550156|gb|EFH84022.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1055

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LT +E   L  +  G+T  E+A  L +SRNT+  ++ SI RK     R  AI  A R
Sbjct: 995  LTTQEQRVLRLLIAGQTYAEMAETLIVSRNTIKTHVTSIYRKLGVNRRLDAIVLAQR 1051


>gi|298290097|ref|YP_003692036.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926608|gb|ADH87417.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 222

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  LG+S  TV  ++++I++K   ++R+ A+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAVIAASK 211


>gi|258593175|emb|CBE69506.1| conserved protein of unknown function; putative transcriptional
           regulator [NC10 bacterium 'Dutch sediment']
          Length = 300

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE++ +T +  G T+  IA  L IS+ TV N+I +I  K    +R  A+AY
Sbjct: 217 DLTRRELQVVTLMRTGATTAAIAEQLFISKTTVRNHIQNIFSKLKVHSRLEAVAY 271


>gi|326442029|ref|ZP_08216763.1| LuxR family two component transcriptional regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 229

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ +  ++ G+T++E+A  L ++ +TV  ++ ++ RK + + R    A+A  N +
Sbjct: 169 LTERELDVIRRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGL 228

Query: 246 V 246
           V
Sbjct: 229 V 229


>gi|153215381|ref|ZP_01949979.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153829298|ref|ZP_01981965.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|229512672|ref|ZP_04402141.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21]
 gi|124114752|gb|EAY33572.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|148875198|gb|EDL73333.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|229350349|gb|EEO15300.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21]
          Length = 214

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y    F+S+      D  LT RE++ L  +  G ++ +IA  L IS  TV +++  I
Sbjct: 136 LLHYYRYAFQSHQAQATVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193

Query: 225 MRKTATKTRSGAIAYAVRN 243
            +K   K R  AIA+  +N
Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212


>gi|332142663|ref|YP_004428401.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552685|gb|AEA99403.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 225

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE+     I++G  + EIA  L IS NTV  ++ SI RKT  + R
Sbjct: 159 LTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNR 206


>gi|91795094|ref|YP_564745.1| regulatory protein, LuxR [Shewanella denitrificans OS217]
 gi|91717096|gb|ABE57022.1| regulatory protein, LuxR [Shewanella denitrificans OS217]
          Length = 204

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G +   T  E+ C+ W ++ KT  EI+++L +S   V+++I   ++KT     S  I +
Sbjct: 137 GDESPFTQAEIACIQWTADCKTPKEISLLLTMSEQEVHDHIQHSLQKTGVSHISQLIGF 195


>gi|310644124|ref|YP_003948882.1| response regulator (chey-like receiver domain and hth-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
 gi|309249074|gb|ADO58641.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
          Length = 216

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E   L  ++ G  S EIA  +GIS  TV  ++ +I  K    +RS A+A ++   I
Sbjct: 154 LTDKERHILKSVAHGFKSKEIAFDMGISERTVKAHLTNIYNKLGVDSRSEAVAVSLERGI 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|310643754|ref|YP_003948512.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309248704|gb|ADO58271.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 596

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+++ LT RE+E L  +S+G     I+  L +S  TV NY +++  K     R  A+  A
Sbjct: 530 GEEYGLTKRELEVLNLLSQGNRYKTISEKLYLSNGTVRNYASTLYDKLGVNNREEAVQKA 589


>gi|77745297|gb|ABB02549.1| response regulator [Lactobacillus reuteri]
          Length = 217

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G    L+ RE E L  I  G T+ EIA+ + IS  TV  +   IM+K    + +  + Y
Sbjct: 149 LGNYIALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHAELLHY 208

Query: 240 AVRNNIV 246
           AV++ +V
Sbjct: 209 AVKHQLV 215


>gi|56708828|ref|YP_164869.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56680513|gb|AAV97178.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3]
          Length = 391

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F+L+  E      ++EGKT+ +IA   G S +T+N+ + SI+ K+    R+ AI  A 
Sbjct: 324 FDLSEAECAVFELMAEGKTNKQIAEERGRSLDTINSQVKSILSKSNCDNRTQAIRMAT 381


>gi|85708084|ref|ZP_01039150.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           NAP1]
 gi|85689618|gb|EAQ29621.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           NAP1]
          Length = 141

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              LT RE E L  +++G ++ EIA  LG+S NTV  +IA++  K     R  A+  A
Sbjct: 77  SLGLTRRECEILDHLAKGASNKEIARSLGVSPNTVKTHIANLYMKLEVTGRGKAVEAA 134


>gi|239927628|ref|ZP_04684581.1| two component LuxR family transcriptional regulator [Streptomyces
           ghanaensis ATCC 14672]
          Length = 107

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE++ L  I+EG +  EIA  L ++  TV NY  S ++K   ++++ A+  A +  I
Sbjct: 3   LVEREIQVLKAIAEGASYAEIAADLILAHATVKNYAHSAIKKLGARSQAHAVHLAYQAGI 62

Query: 246 V 246
           +
Sbjct: 63  L 63


>gi|209515178|ref|ZP_03264046.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209504432|gb|EEA04420.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 208

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + L+ RE++ L  I  GK+  EI  ++ IS  T + Y + I+ K    + +  I YA+RN
Sbjct: 143 YSLSARELQILQLIVSGKSLTEIGRLIFISVKTASTYRSRILSKLNLTSNAQLIDYAIRN 202

Query: 244 NI 245
            +
Sbjct: 203 GV 204


>gi|30019876|ref|NP_831507.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228920546|ref|ZP_04083891.1| Response regulator [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228952218|ref|ZP_04114309.1| Response regulator [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229043592|ref|ZP_04191301.1| Response regulator [Bacillus cereus AH676]
 gi|229109295|ref|ZP_04238894.1| Response regulator [Bacillus cereus Rock1-15]
 gi|229127162|ref|ZP_04256159.1| Response regulator [Bacillus cereus BDRD-Cer4]
 gi|229144451|ref|ZP_04272856.1| Response regulator [Bacillus cereus BDRD-ST24]
 gi|229150040|ref|ZP_04278265.1| Response regulator [Bacillus cereus m1550]
 gi|296502434|ref|YP_003664134.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29895421|gb|AAP08708.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228633478|gb|EEK90082.1| Response regulator [Bacillus cereus m1550]
 gi|228639082|gb|EEK95507.1| Response regulator [Bacillus cereus BDRD-ST24]
 gi|228656278|gb|EEL12119.1| Response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674305|gb|EEL29550.1| Response regulator [Bacillus cereus Rock1-15]
 gi|228725814|gb|EEL77062.1| Response regulator [Bacillus cereus AH676]
 gi|228807489|gb|EEM54017.1| Response regulator [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228839176|gb|EEM84472.1| Response regulator [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|296323486|gb|ADH06414.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 212

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|303246118|ref|ZP_07332399.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302492514|gb|EFL52385.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 227

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++EG+    IA  L ISR TV N+ ++I  K +    +  + YAVR  I
Sbjct: 158 LTRREQQILRLLAEGRGVATIAAELFISRKTVENHRSNIFGKLSFSNMAELVHYAVRMGI 217

Query: 246 V 246
           +
Sbjct: 218 I 218


>gi|302187383|ref|ZP_07264056.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
          Length = 87

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W + GKT+ EIA I   S  TV+ + ++I RK    + S A+  A+R  
Sbjct: 23  QLTVKERQILEWAAIGKTAWEIARIQKCSEATVHFHTSNIRRKFDVHSLSAALVIAIRQG 82

Query: 245 IV 246
           ++
Sbjct: 83  VI 84


>gi|295689487|ref|YP_003593180.1| LuxR family two component transcriptional regulator [Caulobacter
           segnis ATCC 21756]
 gi|295431390|gb|ADG10562.1| two component transcriptional regulator, LuxR family [Caulobacter
           segnis ATCC 21756]
          Length = 207

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  ++ G  + EIA  L +S +TV  ++ SI  K     R+ A+  A R  I
Sbjct: 145 LSEREIDVLKRVANGAANKEIARALSLSEDTVKGHMRSIFSKLDVTDRTQAVTVAHRRGI 204

Query: 246 V 246
           +
Sbjct: 205 I 205


>gi|254390047|ref|ZP_05005268.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197703755|gb|EDY49567.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 723

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G  +  IA  LGI   TV N+I S+  K   + R+ A+  A  + +
Sbjct: 655 LTPRETEVLRLIATGLDNTGIAEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGL 714

Query: 246 V 246
           V
Sbjct: 715 V 715


>gi|146343451|ref|YP_001208499.1| two-component LuxR family transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146196257|emb|CAL80284.1| putative two-component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. ORS278]
          Length = 261

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +S+G  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 191 LTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 247


>gi|28868819|ref|NP_791438.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969577|ref|ZP_03397713.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383351|ref|ZP_07231769.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|28852058|gb|AAO55133.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213925673|gb|EEB59232.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 126

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +T RE + L  + +G T+ EIA  L IS  TV ++++S++RK   KTR+  +A  V
Sbjct: 47  VTIREQDVLGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVKTRAELMARCV 102


>gi|53718880|ref|YP_107866.1| putative transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52209294|emb|CAH35239.1| putative transcriptional regulator [Burkholderia pseudomallei
           K96243]
          Length = 302

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 182 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 234


>gi|297559326|ref|YP_003678300.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843774|gb|ADH65794.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L   SEG+T+  I   L IS  TV  ++  +  K     R+ A++ A+R  +
Sbjct: 147 LSPREVEVLRLASEGRTNAAIGRALHISPTTVKTHLMRVYDKLGVGDRTSAVSQAIRRGL 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|237715864|ref|ZP_04546345.1| transcriptional regulator [Bacteroides sp. D1]
 gi|229443511|gb|EEO49302.1| transcriptional regulator [Bacteroides sp. D1]
          Length = 221

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 151 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 210

Query: 243 NNIV 246
             IV
Sbjct: 211 AGIV 214


>gi|229132664|ref|ZP_04261511.1| Response regulator [Bacillus cereus BDRD-ST196]
 gi|228650791|gb|EEL06779.1| Response regulator [Bacillus cereus BDRD-ST196]
          Length = 195

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 90  DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 143

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 144 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 188


>gi|186471314|ref|YP_001862632.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197623|gb|ACC75586.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ GK+ +EIA I  +S  T++ +   +M+K      +  I YA+R+ +
Sbjct: 148 LSDREFQVLQMLAAGKSINEIADICALSAKTISTHKMRLMQKLGLANNAEVIRYAIRHGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|145224163|ref|YP_001134841.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|315444498|ref|YP_004077377.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145216649|gb|ABP46053.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
 gi|315262801|gb|ADT99542.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 217

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L ++++G T+ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 156 LTERETEILRYVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQVGNRVELARYAIEHGL 215


>gi|237722378|ref|ZP_04552859.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|260171068|ref|ZP_05757480.1| transcriptional regulator [Bacteroides sp. D2]
 gi|299146395|ref|ZP_07039463.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|315919388|ref|ZP_07915628.1| transcriptional regulator [Bacteroides sp. D2]
 gi|229448188|gb|EEO53979.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|298516886|gb|EFI40767.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|313693263|gb|EFS30098.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 149 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 208

Query: 243 NNIV 246
             IV
Sbjct: 209 AGIV 212


>gi|256389975|ref|YP_003111539.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356201|gb|ACU69698.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 208

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L   ++G T  +IA  L +S  TV NY+++ ++KTA + R+ A+  A
Sbjct: 148 LTPRERDVLAASADGSTIADIARRLHLSEGTVRNYLSACIQKTAARNRTEAVRTA 202


>gi|229096320|ref|ZP_04227293.1| Response regulator [Bacillus cereus Rock3-29]
 gi|228687280|gb|EEL41185.1| Response regulator [Bacillus cereus Rock3-29]
          Length = 212

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|227112193|ref|ZP_03825849.1| quorum-sensing transcriptional activator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 244

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +S G+T  E++ ILGIS  TV  +I + +RK        AI  A+  N+
Sbjct: 169 LSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|225175237|ref|ZP_03729233.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169413|gb|EEG78211.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E + L  I+EGKT+ +IA  + ++  TV NY++ I  K     R+ A AY  + +
Sbjct: 150 LTEMEKKVLLLIAEGKTNKQIAEEIFLAEKTVRNYVSKIFLKLNLSNRAAAAAYVSKKS 208


>gi|254391784|ref|ZP_05006980.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813562|ref|ZP_06772205.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|197705467|gb|EDY51279.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326161|gb|EFG07804.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ +  ++ G+T++E+A  L ++ +TV  ++ ++ RK + + R    A+A  N +
Sbjct: 166 LTERELDVIRRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGL 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|169828201|ref|YP_001698359.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992689|gb|ACA40229.1| comA, srfB, comAA; two-component response regulator. potential
           cognate sensor kinase is comP [Lysinibacillus sphaericus
           C3-41]
          Length = 208

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ +E E L  +++G T+  IA  +G+++ TV NY++ +  K   ++R+ A+  A
Sbjct: 147 LSDKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLFVKLNVESRAEAVIVA 201


>gi|167587375|ref|ZP_02379763.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 181

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           LT RE E    ++ GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 124 LTPREREIAAQLATGKTSKQIGRVLDISSRTVDIYRARLMRKYGT 168


>gi|298242057|ref|ZP_06965864.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555111|gb|EFH88975.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I+ G ++ EIA  L IS  TV  ++++I+ K     R+ A  +A +  
Sbjct: 155 ELSERELEVLRLIAGGLSNTEIAARLTISEKTVKGHLSNILSKLHLMDRTQAAVFAWQQG 214

Query: 245 IV 246
           ++
Sbjct: 215 LI 216


>gi|297162582|gb|ADI12294.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 235

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E    +  G ++ E+AV L +S  TV +++A I  K A + R+ A+  A    +
Sbjct: 162 LTPRELEVPGLLGRGLSNAELAVELTLSEATVKSHVARIFAKLALRDRAQAVVLAYETGL 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|289668036|ref|ZP_06489111.1| transcriptional regulator [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 923

 Score = 38.9 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 35/58 (60%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R  A+A A+   ++
Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRENALAQALERGLL 909


>gi|262407478|ref|ZP_06084026.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|262354286|gb|EEZ03378.1| transcriptional regulator [Bacteroides sp. 2_1_22]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 149 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 208

Query: 243 NNIV 246
             IV
Sbjct: 209 AGIV 212


>gi|212637151|ref|YP_002313676.1| regulatory protein LuxR [Shewanella piezotolerans WP3]
 gi|212558635|gb|ACJ31089.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3]
          Length = 223

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT  + R
Sbjct: 155 QLTRREKTIIQLVSSGARNKEIAEGLCISEHTVKAHISSIFRKTHARNR 203


>gi|188575417|ref|YP_001912346.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519869|gb|ACD57814.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 204

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L+ +  G T+  +A  LGI+  TV   +  I++K   K R+ A  YAV++ +
Sbjct: 143 LSKREKQVLSLLPRGLTNASLAAELGIAPGTVKVQVERILQKLEVKDRTQAAVYAVQSRL 202

Query: 246 V 246
            
Sbjct: 203 A 203


>gi|134093685|ref|YP_001098760.1| putative C4-dicarboxylate transport transcriptional regulatory
           protein dctR [Herminiimonas arsenicoxydans]
 gi|133737588|emb|CAL60631.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Herminiimonas arsenicoxydans]
          Length = 196

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L DR+ E  L A+ QA+   S  +H  +   L+GRE E L  I EGK +  IA  LGIS 
Sbjct: 114 LMDRVQE-ALSASEQAS--ASVAIHT-RLAALSGREREVLDLILEGKMNKVIADKLGISM 169

Query: 215 NTVNNYIASIMRKTATKT 232
            TV  + A I  K   KT
Sbjct: 170 RTVEVHRAHIFDKMNVKT 187


>gi|116694520|ref|YP_728731.1| response regulator [Ralstonia eutropha H16]
 gi|113529019|emb|CAJ95366.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I+ G T+ +IA  L IS  T   +  ++MRK      +  +AYA R  I
Sbjct: 149 LTRRELQILMLIARGATAGDIAAQLDISPLTARKHRENLMRKLDLHNTAEVVAYAARQGI 208


>gi|88706284|ref|ZP_01103990.1| two-component system response regulator [Congregibacter litoralis
           KT71]
 gi|88699435|gb|EAQ96548.1| two-component system response regulator [Congregibacter litoralis
           KT71]
          Length = 222

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 178 VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +  G+  E LTGRE + L  I  GK++ EIA  L IS  TV  +  S+M K    + +  
Sbjct: 150 IRKGQQGETLTGRERQVLNMIVMGKSNKEIAQELNISPKTVEKHRGSVMLKLEVHSVAQL 209

Query: 237 IAYAVRNNIV 246
           +A A+++ ++
Sbjct: 210 MARALKDGLI 219


>gi|326441021|ref|ZP_08215755.1| transcriptional regulatory protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 1010

 Score = 38.9 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LTGRE E    ++EG T+ EIAV L +S +TV  ++  I  K   ++R+    +  +N+
Sbjct: 941 LTGRETEVALLLAEGLTNREIAVRLRLSPSTVATHLNHIRDKLNIRSRTRIALWVTKNH 999


>gi|325290812|ref|YP_004266993.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966213|gb|ADY56992.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 226

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 171 NMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           N FK   V     F+L T REVE    +++G  + EIA  LGI + TV+ +I +I +K  
Sbjct: 151 NNFKVPLVANKSMFQLFTSREVEVARLMNKGLQNKEIAAALGIKKRTVDLHIRNIQKKLK 210

Query: 230 TKTRSGAI 237
             TR  A+
Sbjct: 211 VTTRLEAV 218


>gi|319763114|ref|YP_004127051.1| pas sensor protein [Alicycliphilus denitrificans BC]
 gi|330825177|ref|YP_004388480.1| LuxR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317117675|gb|ADV00164.1| PAS sensor protein [Alicycliphilus denitrificans BC]
 gi|329310549|gb|AEB84964.1| transcriptional regulator, LuxR family [Alicycliphilus
           denitrificans K601]
          Length = 181

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 25/48 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELT RE E    + +G TS EI   L IS  TV  Y A +MRK    T
Sbjct: 123 ELTAREREVAARVLDGMTSKEIGRALDISHRTVEIYRARLMRKYGAST 170


>gi|294812526|ref|ZP_06771169.1| regulatory protein, LuxR [Streptomyces clavuligerus ATCC 27064]
 gi|294325125|gb|EFG06768.1| regulatory protein, LuxR [Streptomyces clavuligerus ATCC 27064]
          Length = 1013

 Score = 38.9 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE E    ++EG T+ EIAV L +S +TV  ++  I  K   ++R+    +  +N+
Sbjct: 944  LTGRETEVALLLAEGLTNREIAVRLRLSPSTVATHLNHIRDKLNIRSRTRIALWVTKNH 1002


>gi|293369467|ref|ZP_06616050.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|292635465|gb|EFF53974.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 149 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 208

Query: 243 NNIV 246
             IV
Sbjct: 209 AGIV 212


>gi|288919617|ref|ZP_06413946.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349015|gb|EFC83263.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 233

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTG+E E    +  G ++ EIA ++  S +TV  ++ +I+RK A + R   + +A  + +
Sbjct: 173 LTGKEREVFFAVVRGLSNTEIARLVFASESTVKTHVGAILRKLALRDRVQIVVFAYEHGV 232

Query: 246 V 246
           V
Sbjct: 233 V 233


>gi|254491848|ref|ZP_05105027.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010]
 gi|224463326|gb|EEF79596.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010]
          Length = 168

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +L+ RE+E L  + EGK+ +EI+ +LGIS  TV N +  I  K
Sbjct: 106 DLSRRELEILRLLGEGKSMNEISDVLGISYKTVANNLTQIKSK 148


>gi|163119694|ref|YP_081082.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|145903205|gb|AAU25444.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
          Length = 212

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWI 197
           RIR  +  +F  G I+++D +     L   ++N+ +  +     D  L T RE+  +  I
Sbjct: 109 RIRDAIKSVF-NGHIVMQDII-----LDKIKSNLAEHKEAEPKIDESLFTERELGIMALI 162

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + G ++ EI+  L IS  T+ NYI+SI+ KT  + R+
Sbjct: 163 ARGLSNKEISKELFISEGTIANYISSILGKTGLEHRT 199


>gi|18250686|emb|CAD20930.1| RaiR protein [Rhizobium leguminosarum]
          Length = 265

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 183 DF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           DF +L+ RE++CL   + G  + +I   L IS + V  Y+AS  RK    T S A+A A 
Sbjct: 201 DFPQLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKAT 260


>gi|313675451|ref|YP_004053447.1| two component transcriptional regulator, luxr family [Marivirga
           tractuosa DSM 4126]
 gi|312942149|gb|ADR21339.1| two component transcriptional regulator, LuxR family [Marivirga
           tractuosa DSM 4126]
          Length = 213

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 38/64 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K ++L+ RE+E +  + +G T+ EIA  + +S  T+  +  +I++K      +G IA+A 
Sbjct: 150 KKYKLSRREIEIIQLLKKGLTNQEIADKIFLSVLTIQTHRKNIIQKLEVNNSAGLIAFAH 209

Query: 242 RNNI 245
            +NI
Sbjct: 210 EHNI 213


>gi|298241309|ref|ZP_06965116.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554363|gb|EFH88227.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I++  T+ EI   L +S  TV N++++I  K    TR+ AI  A
Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLALSPKTVRNHVSNIFSKLQVATRAQAIIRA 213


>gi|295105926|emb|CBL03469.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 214

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  +++G T+ EI+  + +S  TV  + + I +K   KTR+  ++YA+ + 
Sbjct: 151 QLSNRELEILQLLAKGYTNKEISEQVYLSVKTVEAHRSKIYKKLGFKTRADLVSYALEHK 210

Query: 245 IV 246
           ++
Sbjct: 211 LL 212


>gi|239994578|ref|ZP_04715102.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii ATCC 27126]
          Length = 225

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE+     I++G  + EIA  L IS NTV  ++ SI RKT  + R
Sbjct: 159 LTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNR 206


>gi|296130675|ref|YP_003637925.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022490|gb|ADG75726.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 226

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I+EG ++ EIA  L +S  TV  ++ ++  K   + R  A+  A    +
Sbjct: 163 LTPRELDVLRLIAEGASNAEIAAELVVSETTVKTHVGNVFAKLGARDRVQAVIIAYECGV 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|229008966|ref|ZP_04166312.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228752300|gb|EEM01982.1| Response regulator receiver [Bacillus mycoides Rock1-4]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE+E L  I+ GK + EIA IL IS   V  ++ +I +K     R+ A+   +
Sbjct: 154 LTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGI 209


>gi|326442335|ref|ZP_08217069.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 203

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S + K   + R 
Sbjct: 132 AADAISAGDSPLTAREAEVLALAADGAPIAEIAERASLSQGTVRNYLSSAVSKLGAENRH 191

Query: 235 GAIAYA 240
            A+  A
Sbjct: 192 TAVRLA 197


>gi|261364979|ref|ZP_05977862.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
 gi|288566780|gb|EFC88340.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YAV++ +
Sbjct: 153 LTPRELEILGYLAAGHSNKVIARHLELAESTVKVHVQNLLRKLDLSSRVQAAVYAVQHKV 212


>gi|71735294|ref|YP_274236.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257486339|ref|ZP_05640380.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289628631|ref|ZP_06461585.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646789|ref|ZP_06478132.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|71555847|gb|AAZ35058.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320324920|gb|EFW80992.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329075|gb|EFW85073.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867479|gb|EGH02188.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330880992|gb|EGH15141.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330988455|gb|EGH86558.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 87

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G +  TV+ + ++I RK    +   A+  A+R  
Sbjct: 23  QLTVKERQVLEWVAIGKSAWEISRIQGCTEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82

Query: 245 IV 246
           ++
Sbjct: 83  VI 84


>gi|21224647|ref|NP_630426.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|3367740|emb|CAA20065.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)]
          Length = 892

 Score = 38.9 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+GRE + L  ++   +++EIA  L +S NTV  ++ S  RK A   R  A+  A
Sbjct: 831 ELSGRERDVLRRLARMMSTEEIAADLYVSINTVKTHLKSAYRKLAVNRRGDAVRRA 886


>gi|47565520|ref|ZP_00236561.1| two-component response regulator [Bacillus cereus G9241]
 gi|206974929|ref|ZP_03235844.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|217959320|ref|YP_002337868.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|222095459|ref|YP_002529519.1| DNA-binding response regulator, luxr family [Bacillus cereus Q1]
 gi|229138533|ref|ZP_04267120.1| Response regulator [Bacillus cereus BDRD-ST26]
 gi|229196045|ref|ZP_04322797.1| Response regulator [Bacillus cereus m1293]
 gi|47557510|gb|EAL15837.1| two-component response regulator [Bacillus cereus G9241]
 gi|206746948|gb|EDZ58340.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|217063687|gb|ACJ77937.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|221239517|gb|ACM12227.1| DNA-binding response regulator, LuxR family [Bacillus cereus Q1]
 gi|228587427|gb|EEK45493.1| Response regulator [Bacillus cereus m1293]
 gi|228644941|gb|EEL01186.1| Response regulator [Bacillus cereus BDRD-ST26]
          Length = 212

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|330719950|gb|EGG98410.1| hypothetical protein imdm_44 [gamma proteobacterium IMCC2047]
          Length = 224

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 9/75 (12%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR--KT 228
           ++ ++YDV       LT R+ E L  + EG+++ +IA  L +S NT+  +++ ++R    
Sbjct: 148 DLKRAYDV-------LTERQKEILLLLGEGRSNKDIARRLDLSENTIKVHVSGVLRALNL 200

Query: 229 ATKTRSGAIAYAVRN 243
             +T++G I   +R+
Sbjct: 201 NNRTQAGVIGEKMRH 215


>gi|329297529|ref|ZP_08254865.1| LuxR family two component transcriptional regulator [Plautia stali
           symbiont]
          Length = 198

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT RE++ L  ++ G ++ EIA  L IS  TV  +I +++RK   ++R  A
Sbjct: 137 QLTERELDVLQEVARGLSNKEIAATLHISEETVKVHIRNLLRKLDVRSRVAA 188


>gi|329954342|ref|ZP_08295434.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
 gi|328527610|gb|EGF54603.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
          Length = 233

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK +      A  YA+
Sbjct: 162 QDALLTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLSVNNAHEATKYAM 221

Query: 242 RNNIV 246
           +  IV
Sbjct: 222 KAGIV 226


>gi|319953725|ref|YP_004164992.1| two component transcriptional regulator, luxr family [Cellulophaga
           algicola DSM 14237]
 gi|319422385|gb|ADV49494.1| two component transcriptional regulator, LuxR family [Cellulophaga
           algicola DSM 14237]
          Length = 209

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +L+ REVE L  ++ GK + ++A+ L ++  TV+ Y A +MRK
Sbjct: 148 KLSTREVEVLKMLASGKRNKDVAIGLNLNEKTVSTYKARLMRK 190


>gi|118472043|ref|YP_890213.1| two-component regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118173330|gb|ABK74226.1| two-component regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K+  LT RE++ L  +  G ++ +IA  L I+ +TV N++ S++ K    TR+ A A A
Sbjct: 235 KELVLTSREIQILRLLEMGLSNRDIAEQLCIAVHTVKNHVHSLLAKLGVSTRAQAAALA 293


>gi|74318804|ref|YP_316544.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058299|gb|AAZ98739.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E +  + EG ++  IA  + +S NTV N++ +IM K   + R      A++ +
Sbjct: 148 LTAREMEIVDHVKEGLSNKAIAYKMTLSENTVRNHLRNIMEKLGLRNRVQVATLALKED 206


>gi|42780933|ref|NP_978180.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC
           10987]
 gi|42736854|gb|AAS40788.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC
           10987]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 113 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 167 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 211


>gi|42524246|ref|NP_969626.1| two-component response regulator-like protein [Bdellovibrio
           bacteriovorus HD100]
 gi|39576454|emb|CAE80619.1| two-component response regulator homolog [Bdellovibrio
           bacteriovorus HD100]
          Length = 226

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE+E +  I++GKT+ E+A  L  S +T+  +  ++MRK
Sbjct: 166 LTPRELEVVRMIAQGKTNKEVAACLECSEHTIKTHKTNVMRK 207


>gi|21222655|ref|NP_628434.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|8439479|emb|CAB94221.1| putative response regulator [Streptomyces coelicolor A3(2)]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L  REV+ L  ++EG  + EIA  L  S  TV N +  +  +   + R+ A+AYA+R 
Sbjct: 157 LGLAPREVDVLRLVAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALRE 216

Query: 244 NIV 246
             +
Sbjct: 217 GYI 219


>gi|16329388|ref|NP_440116.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1651869|dbj|BAA16796.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 282

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + T RE   L  +S+G  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++
Sbjct: 219 LDFTPREQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQH 278

Query: 244 NIV 246
            + 
Sbjct: 279 GLT 281


>gi|298246164|ref|ZP_06969970.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553645|gb|EFH87510.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 465

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +  G  + EIA  L +S  TVN ++A+I +K     R+ A++ A+   +
Sbjct: 402 LTTRELEVLRLLVRGLRNKEIAARLYVSERTVNFHLANIYQKMNVSGRTEALSKALAQGL 461

Query: 246 V 246
           V
Sbjct: 462 V 462


>gi|291435968|ref|ZP_06575358.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338863|gb|EFE65819.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 114

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE++ L  I+EG +  EIA  L ++  TV NY  S ++K   ++++ A+  A +  I
Sbjct: 10  LVEREIQVLKAIAEGASYAEIAADLILAHATVKNYAHSAIKKLGARSQAHAVHLAYQAGI 69

Query: 246 V 246
           +
Sbjct: 70  L 70


>gi|329905999|ref|ZP_08274320.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547387|gb|EGF32216.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 223

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+++ LT I+  K + EIA  L +S  TV  + A IM +   +   G +  AVR+ +
Sbjct: 159 LTTRQLQILTMIAGRKGTKEIAFELDLSEKTVAAHRAQIMERLGVRDVVGLVLLAVRHGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|330817027|ref|YP_004360732.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia gladioli BSR3]
 gi|327369420|gb|AEA60776.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia gladioli BSR3]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I+ G T  +IA  LG+S  TV+ Y A I+ K      +  + YA ++ +
Sbjct: 149 LSSRELQVLRLIAAGDTVGDIAHQLGLSVKTVSTYKARILEKMKLPHEAALVRYASQHRL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|325067500|ref|ZP_08126173.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
 gi|326772178|ref|ZP_08231463.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           viscosus C505]
 gi|326638311|gb|EGE39212.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           viscosus C505]
          Length = 223

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT 202
           +L   +G  ++  R  ++ L++AYQ+   ++      ++   EL  R  +  T + EG T
Sbjct: 124 LLRASRGEPVMSSRPTKM-LVSAYQSEQKRATAEARIQELVNELPPRLRDIYTCLLEGLT 182

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +  IA  LGIS NTV  Y++ ++ +    +R+  IA A+ N
Sbjct: 183 NRRIARKLGISENTVRIYVSEVLHRLGHTSRTELIAAALGN 223


>gi|291571364|dbj|BAI93636.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 216

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +LT RE+E L  I +G ++ EIA  L IS  TV N+++SI+ +   + R+
Sbjct: 153 DLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRT 202


>gi|289168290|ref|YP_003446559.1| response regulator [Streptococcus mitis B6]
 gi|288907857|emb|CBJ22697.1| response regulator [Streptococcus mitis B6]
          Length = 198

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L  +  G T D++   + +S+ TV+N++A+I  K     R  AI  A
Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIA 189


>gi|258623350|ref|ZP_05718354.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM573]
 gi|258584316|gb|EEW09061.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM573]
          Length = 214

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G ++ +IA  L IS  TV +++  I +K   K R  AIA+  +N
Sbjct: 154 DLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQN 212


>gi|302531617|ref|ZP_07283959.1| predicted protein [Streptomyces sp. AA4]
 gi|302440512|gb|EFL12328.1| predicted protein [Streptomyces sp. AA4]
          Length = 941

 Score = 38.5 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           EL+ RE E    ++EG+T+ +IA  L +S  TV  ++A ++RK   ++R+
Sbjct: 880 ELSPREREVAEMLAEGRTNRQIADGLFLSPRTVEQHVAKVLRKLGARSRT 929


>gi|229017120|ref|ZP_04174036.1| Response regulator [Bacillus cereus AH1273]
 gi|228744179|gb|EEL94265.1| Response regulator [Bacillus cereus AH1273]
          Length = 195

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 90  DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 143

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 144 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 188


>gi|206562058|ref|YP_002232821.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
 gi|198038098|emb|CAR54046.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
          Length = 237

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS------IMRKTATKTRSGAIA 238
           LT RE E L W ++GKT+ EI +I GI+  TV  ++ +       M KT   T++  + 
Sbjct: 176 LTLREREVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLG 234


>gi|120436463|ref|YP_862149.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117578613|emb|CAL67082.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 210

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L       T   IA  + +S  TV NY  S+  K   K+R G + +A++  
Sbjct: 147 ELTAREMEFLNHACSELTYKAIAGEMNLSPKTVENYRESLFSKLRVKSRVGLVIFAIKEG 206

Query: 245 I 245
           I
Sbjct: 207 I 207


>gi|315225137|ref|ZP_07866954.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
 gi|314944820|gb|EFS96852.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
          Length = 237

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE E LT  S+G +S EIA  L IS  TVN +  +I  K   ++   AI  A R 
Sbjct: 175 FALTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDIARRK 234

Query: 244 NIV 246
            I+
Sbjct: 235 GIL 237


>gi|289662128|ref|ZP_06483709.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 923

 Score = 38.5 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 36/58 (62%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ +IA  L +S NT+  ++ ++ RK   ++R  A+A A++  ++
Sbjct: 852 RELEVLAQLARGYSNKQIARCLHLSENTIKFHLKNLYRKLDARSRENALAQALQRGLL 909


>gi|182413500|ref|YP_001818566.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840714|gb|ACB74966.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 220

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE E L  ++EG+++ EIA  L I+  TV N++++++ K     R+ A
Sbjct: 160 LSVREREVLGLLAEGRSNKEIASALAIAEGTVKNHMSNVLGKLGALDRTQA 210


>gi|153825634|ref|ZP_01978301.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|149740664|gb|EDM54771.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
          Length = 214

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y    F+S+      D  LT RE++ L  +  G ++ +IA  L IS  TV +++  I
Sbjct: 136 LLHYYRYAFQSHQAQATVD--LTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQI 193

Query: 225 MRKTATKTRSGAIAYAVRN 243
            +K   K R  AIA+  +N
Sbjct: 194 FKKLNVKNRVKAIAWVNQN 212


>gi|114568884|ref|YP_755564.1| LuxR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339346|gb|ABI64626.1| transcriptional regulator, LuxR family [Maricaulis maris MCS10]
          Length = 141

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K   +T RE++ L  +  G+++ E+A  LG+S NTV  +IA +  K    +R  AI  A
Sbjct: 62  KSLAITPRELDVLEALVSGESNKELARTLGVSPNTVKTHIARLFDKLDVTSRIQAIETA 120


>gi|7385146|gb|AAF61717.1|AF232768_2 acylhomoserine lactone dependent transcriptional activator
           [Pseudomonas fluorescens]
          Length = 242

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L W+  GK   EIAVI  IS  TV  ++++I  K        A+  A R  I
Sbjct: 182 LSARELGVLKWVMMGKAYREIAVICAISERTVKFHMSNISGKLQVCNAKQAVYEAQRQGI 241

Query: 246 V 246
           +
Sbjct: 242 L 242


>gi|21222474|ref|NP_628253.1| LuxR family two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289770352|ref|ZP_06529730.1| luxR family two component system response regulator [Streptomyces
           lividans TK24]
 gi|5918474|emb|CAB56352.1| luxR family two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289700551|gb|EFD67980.1| luxR family two component system response regulator [Streptomyces
           lividans TK24]
          Length = 200

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 29/63 (46%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    ++  TV NY++S   K   + R 
Sbjct: 129 AADAISAGDSPLTAREAEVLEHAADGAPVSEIAERAALAEGTVRNYLSSAASKLGAENRH 188

Query: 235 GAI 237
            A+
Sbjct: 189 AAV 191


>gi|84497370|ref|ZP_00996192.1| putative two component response regulator [Janibacter sp. HTCC2649]
 gi|84382258|gb|EAP98140.1| putative two component response regulator [Janibacter sp. HTCC2649]
          Length = 245

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G++F LT RE E +  ++ G ++ EIA    +S N+V +YI S  R     +RS A+ + 
Sbjct: 153 GREFGLTPRESEIIALVTAGLSNLEIAERTYLSINSVKSYIRSAYRTMDVTSRSKAVLWG 212

Query: 241 VRNNI 245
           + + +
Sbjct: 213 IDHGM 217


>gi|333024715|ref|ZP_08452779.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744567|gb|EGJ75008.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 203

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           WG    L+ RE E +  I+ G  + +IA    I+  TV N+I  I  K  T TRS AIA
Sbjct: 132 WGG--PLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAKLQTTTRSEAIA 188


>gi|291447895|ref|ZP_06587285.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
 gi|291350842|gb|EFE77746.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 933

 Score = 38.5 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +L+ RE E     S G T+ EIA  L +S  TV  +IA  MRKT   +R
Sbjct: 878 QLSPREAEVAQLASSGLTNREIAATLHLSPRTVEQHIAGAMRKTGALSR 926


>gi|258626995|ref|ZP_05721793.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM603]
 gi|258580669|gb|EEW05620.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM603]
          Length = 214

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G ++ +IA  L IS  TV +++  I +K   K R  AIA+  +N
Sbjct: 154 DLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQN 212


>gi|239944429|ref|ZP_04696366.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
 gi|239990886|ref|ZP_04711550.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           11379]
          Length = 936

 Score = 38.5 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +L+ RE E     S G T+ EIA  L +S  TV  +IA  MRKT   +R
Sbjct: 881 QLSPREAEVAQLASSGLTNREIAATLHLSPRTVEQHIAGAMRKTGALSR 929


>gi|228958121|ref|ZP_04119856.1| Response regulator [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228801638|gb|EEM48520.1| Response regulator [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002]
 gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002]
          Length = 232

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+++
Sbjct: 169 IDLTPREQSVLDLVAQGLMNKEIAKELETSVRNVEKYVSRLFSKTGTNSRTELVRYALKH 228

Query: 244 NI 245
            +
Sbjct: 229 GL 230


>gi|118465644|ref|YP_883262.1| response regulator receiver domain-containing protein
           [Mycobacterium avium 104]
 gi|118166931|gb|ABK67828.1| response regulator receiver domain [Mycobacterium avium 104]
          Length = 221

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L ++++G ++ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 158 LTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217


>gi|41409373|ref|NP_962209.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398193|gb|AAS05823.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 221

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L ++++G ++ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 158 LTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217


>gi|2495418|sp|Q46751|CARR_PECCC RecName: Full=Transcriptional activator protein CarR
 gi|765139|gb|AAC45995.1| CarR [Pectobacterium carotovorum]
          Length = 244

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +S G+T  E++ ILGIS  TV  +I + +RK        AI  A+  N+
Sbjct: 169 LSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|107027317|ref|YP_624828.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691286|ref|YP_836819.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170736675|ref|YP_001777935.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105896691|gb|ABF79855.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116649286|gb|ABK09926.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
 gi|169818863|gb|ACA93445.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 237

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS------IMRKTATKTRSGAIA 238
           LT RE E L W ++GKT+ EI +I GI+  TV  ++ +       M KT   T++  + 
Sbjct: 176 LTLREREVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLG 234


>gi|330466590|ref|YP_004404333.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328809561|gb|AEB43733.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + R+ A   A R
Sbjct: 150 LTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATR 206


>gi|324325861|gb|ADY21121.1| LuxR family DNA-binding response regulator [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|300716382|ref|YP_003741185.1| two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
 gi|299062218|emb|CAX59335.1| Two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
          Length = 205

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 178 VHWGKDFEL----TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++  +DF+L    T RE++ L  +  GK++  IA  L +S  T++ Y  SIM K  T+  
Sbjct: 134 INKDRDFQLMLSFTNRELQILRELGAGKSNKIIAGELLLSSKTISTYKRSIMNKLQTQKV 193

Query: 234 SGAIAYAVRNN 244
              I +A RN 
Sbjct: 194 RDVIDFARRNG 204


>gi|229000917|ref|ZP_04160386.1| Response regulator receiver [Bacillus mycoides Rock3-17]
 gi|228758834|gb|EEM07909.1| Response regulator receiver [Bacillus mycoides Rock3-17]
          Length = 224

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE+E L  I+ GK + EIA IL IS   V  ++ +I +K     R+ A+   +
Sbjct: 163 LTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGI 218


>gi|307150230|ref|YP_003885614.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
 gi|306980458|gb|ADN12339.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 237

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           W K  +LT RE++ ++ +++G T+ EI   L I++N+V   +  I RK   ++R+  +A
Sbjct: 175 WAK--KLTSRELQIISLVAQGLTNTEIGQELWITQNSVKQALKRIFRKLDVRSRAQMVA 231


>gi|167902027|ref|ZP_02489232.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
          Length = 279

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|153807885|ref|ZP_01960553.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185]
 gi|149129494|gb|EDM20708.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185]
          Length = 219

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+
Sbjct: 148 EDHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAM 207

Query: 242 RNNIV 246
           R  IV
Sbjct: 208 RAGIV 212


>gi|29832581|ref|NP_827215.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609701|dbj|BAC73750.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +
Sbjct: 162 LTGREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGL 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|91774802|ref|YP_544558.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91708789|gb|ABE48717.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 244

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE E L  +++G  + EIA  L +SR TV  +I  I RK A  +R+ A+
Sbjct: 183 LSPREGEILGLVAQGMANREIAEQLHLSRYTVECHIKHIYRKLAVSSRTKAV 234


>gi|56418899|ref|YP_146217.1| hypothetical protein GK0364 [Geobacillus kaustophilus HTA426]
 gi|56378741|dbj|BAD74649.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 549

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 165 LAAYQANMFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRN 215
           LAA  A M  S   H G D          +LT RE++ L  + +G ++ EI+  L IS +
Sbjct: 456 LAAIGAMMI-SGKAHGGNDGTVNIDMLSEQLTAREMDVLELLIQGCSNREISERLFISVH 514

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           TV N+I +I +K     RS  IA   + N
Sbjct: 515 TVKNHITNIFQKIGVNDRSQLIALVYQLN 543


>gi|84684780|ref|ZP_01012680.1| transcriptional regulator, LuxR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667115|gb|EAQ13585.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 198

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 4/104 (3%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           I  MLLF +G      R+ E        A  F  + +    ++ELT  E +   ++ +G 
Sbjct: 84  ISGMLLFREGH----KRMMEAERRMNAAAGEFHEHLLSQFDEWELTPTEKDIALYVVKGF 139

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA + G + +TV + +++I RK+   +R     +AV + I
Sbjct: 140 SNLEIASLRGTTESTVKSQVSAIFRKSGVNSRQQLATWAVEDLI 183


>gi|330875631|gb|EGH09780.1| regulatory protein, LuxR [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 87

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E + L W++ GKT+ EIA I   +  TV+ +  +I RK    + S A+  A+R  +
Sbjct: 24  LTVKERQVLEWVAAGKTAWEIARIQECTEATVHFHTCNIRRKFDVHSLSAALVMAIRQGV 83

Query: 246 V 246
           +
Sbjct: 84  I 84


>gi|323139012|ref|ZP_08074072.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242]
 gi|322395766|gb|EFX98307.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242]
          Length = 267

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D  L  RE  CL W + GKT +EI  IL IS +TV  ++ S   +  T   +  +A A+
Sbjct: 189 DVHLPLREASCLRWKALGKTDEEIGRILVISPHTVRFHLESARARLNTANTTHTVAKAL 247


>gi|321157306|emb|CBW39288.1| Response regulator [Streptococcus pneumoniae]
          Length = 198

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L  +  G T D++   + +S+ TV+N++A+I  K     R  AI  A
Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIA 189


>gi|306841639|ref|ZP_07474330.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306288280|gb|EFM59656.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
          Length = 234

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E L  +SEG  + +IA  L +SR+T+  +I +I RK A  +R+ A A A R 
Sbjct: 173 LSPRENEILRLVSEGLGNRDIAEQLFLSRHTIEAHIKNIYRKLAVSSRTQA-AQAARQ 229


>gi|270295166|ref|ZP_06201367.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274413|gb|EFA20274.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 210

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVI 209
           LRD +  +     Y +N+F   D            EL+ RE E L ++S+G ++ EI+ +
Sbjct: 116 LRDAISTLKNGTRYFSNVFSELDKEKQNTLPHALPELSRREKEVLAYLSQGLSTSEISQL 175

Query: 210 LGISRNTVNNYIASIMRKTATK 231
           L +S NT+  Y   +M K   K
Sbjct: 176 LFLSINTIQTYRKRLMEKLEAK 197


>gi|256785041|ref|ZP_05523472.1| regulatory protein [Streptomyces lividans TK24]
 gi|289768934|ref|ZP_06528312.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24]
 gi|289699133|gb|EFD66562.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24]
          Length = 166

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LTGRE + L  +S+G+T+ +IA  L IS  T + ++++I+ K     R  A A A R
Sbjct: 95  LTGRERDVLRLVSDGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHR 151


>gi|206562484|ref|YP_002233247.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038524|emb|CAR54482.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ +  I  G+T  +IA  L +S  TV+ Y   I+ K A    +  I YAVR+++
Sbjct: 149 LSARELDVMRRIVAGQTVTQIAFELALSAKTVSTYKTRILDKMALPHEAALIRYAVRHDL 208


>gi|168184300|ref|ZP_02618964.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Bf]
 gi|237794731|ref|YP_002862283.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           Ba4 str. 657]
 gi|182672663|gb|EDT84624.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Bf]
 gi|229261330|gb|ACQ52363.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Ba4 str. 657]
          Length = 217

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +N
Sbjct: 154 YNLTEREINIIRQIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKN 213

Query: 244 NI 245
           NI
Sbjct: 214 NI 215


>gi|167836083|ref|ZP_02462966.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 279

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|329926657|ref|ZP_08281068.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328939066|gb|EGG35431.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 216

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +++ LT RE++    ++E K + EIA +L I+  TV NYI+ I  K     R+ AI
Sbjct: 150 QNYNLTPRELQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRTKAI 205


>gi|317126445|ref|YP_004100557.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590533|gb|ADU49830.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 209

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE++ L  ++EG T+ +IA  L +S  TV +++     K    +R+ A+A A    +
Sbjct: 148 LSGRELDVLRLVAEGGTNRDIARALFLSEATVKSHLVHAFGKLGVTSRTAAVATARSRGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|293375961|ref|ZP_06622221.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325841957|ref|ZP_08167534.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|292645398|gb|EFF63448.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325489790|gb|EGC92145.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 214

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q    KS D  + + + L+ +E+  +  I+ G T+ EIA  L +S  T+ N+I +I+ K 
Sbjct: 138 QTTSIKS-DAQFYEQYRLSEKELMIIREIATGLTNKEIAAKLFLSEGTIKNHITNILFKL 196

Query: 229 ATKTRSGAIAYAVRNNI 245
             + R+    +A +N +
Sbjct: 197 ELRDRTQIAIFAFKNGL 213


>gi|302866185|ref|YP_003834822.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502743|ref|YP_004081630.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302569044|gb|ADL45246.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315409362|gb|ADU07479.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + R+ A   A R
Sbjct: 150 LTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATR 206


>gi|302550880|ref|ZP_07303222.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468498|gb|EFL31591.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 228

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +
Sbjct: 163 LTGREREVLVLVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGL 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|240172696|ref|ZP_04751355.1| two component LuxR family transcriptional regulator [Mycobacterium
           kansasii ATCC 12478]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +T +++G +  +IA  L ++R+T+  ++ S+  K     R  A+A A+R  +
Sbjct: 154 LTEREAQVITMMADGLSVPQIASRLHLARSTIKTHVHSLYEKLGVSDRGAAVAEAMRRRL 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|160891745|ref|ZP_02072748.1| hypothetical protein BACUNI_04200 [Bacteroides uniformis ATCC 8492]
 gi|317478188|ref|ZP_07937356.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|156859152|gb|EDO52583.1| hypothetical protein BACUNI_04200 [Bacteroides uniformis ATCC 8492]
 gi|316905640|gb|EFV27426.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 210

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVI 209
           LRD +  +     Y +N+F   D            EL+ RE E L ++S+G ++ EI+ +
Sbjct: 116 LRDAISTLKNGTRYFSNVFSELDKEKQNTLPHALPELSRREKEVLAYLSQGLSTSEISQL 175

Query: 210 LGISRNTVNNYIASIMRKTATK 231
           L +S NT+  Y   +M K   K
Sbjct: 176 LFLSINTIQTYRKRLMEKLEAK 197


>gi|108799996|ref|YP_640193.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119869121|ref|YP_939073.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|108770415|gb|ABG09137.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119695210|gb|ABL92283.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
          Length = 218

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G T+ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 157 LTERETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216


>gi|323492987|ref|ZP_08098124.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323312766|gb|EGA65893.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  ++EGK+S E+A IL IS  TV  +  +I  K    + +    YAV   I
Sbjct: 151 LSRREEAILKLVAEGKSSKEVASILNISYRTVETHRQNIKHKLDLHSTAELAKYAVEKGI 210

Query: 246 V 246
           V
Sbjct: 211 V 211


>gi|315222040|ref|ZP_07863951.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189006|gb|EFU22710.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 199

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ +E+  L   + G +S EIA  L +S  TV NY++SI+ K A + R  A+  A  N
Sbjct: 139 LSNQEILVLQAAARGLSSKEIAQKLYLSNGTVRNYMSSILTKLAAENRLEAVRIAQEN 196


>gi|311029481|ref|ZP_07707571.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 214

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  + +G T+ EI+  L I   TV  ++++I+ K     R+ A  YA R+ 
Sbjct: 149 DLTDRELEVLMCLGDGLTNQEISEELFIGIKTVKTHVSNILGKLQVADRTQAAIYANRHG 208

Query: 245 IV 246
           ++
Sbjct: 209 VL 210


>gi|268317984|ref|YP_003291703.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
 gi|262335518|gb|ACY49315.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
          Length = 218

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L   +EG TS EIA  L IS  TV  +  ++M K    +++  I YAV+  +
Sbjct: 153 LTDRERQILHLTAEGYTSREIAERLFISPRTVEKHRENLMAKLDIHSQAELIHYAVQRGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|126727851|ref|ZP_01743680.1| two component transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126702873|gb|EBA01977.1| two component transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 232

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT ++   L  I EGK + +IA  L I+  TV  ++ +IMRK    +R+ A+  A
Sbjct: 166 LTNQQARILELICEGKLNKQIAFELTIAETTVKAHVTAIMRKLQVHSRTQAVLVA 220


>gi|30316455|gb|AAP31397.1| hypothetical two-components response regulator protein [Pseudomonas
           putida]
          Length = 217

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT R+ E L  I++GKT+ EIA  L IS  TV  +++S+++     +R+ A
Sbjct: 159 QLTHRQQEVLRLIAQGKTNKEIAKALSISPFTVRIHVSSLLKLLGVSSRTAA 210


>gi|83942258|ref|ZP_00954719.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
 gi|83846351|gb|EAP84227.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
          Length = 220

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  +++GK++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 153 LTEREQTILLQLAQGKSNKEVALTLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|126453676|ref|YP_001065612.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106a]
 gi|134283901|ref|ZP_01770597.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           305]
 gi|167718883|ref|ZP_02402119.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167737890|ref|ZP_02410664.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167815073|ref|ZP_02446753.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167823489|ref|ZP_02454960.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167845041|ref|ZP_02470549.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167893583|ref|ZP_02480985.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167910266|ref|ZP_02497357.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|217419942|ref|ZP_03451448.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           576]
 gi|242316523|ref|ZP_04815539.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106b]
 gi|254181152|ref|ZP_04887749.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1655]
 gi|254190516|ref|ZP_04897023.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195131|ref|ZP_04901560.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           S13]
 gi|254257993|ref|ZP_04949047.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1710a]
 gi|126227318|gb|ABN90858.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106a]
 gi|134244690|gb|EBA44788.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           305]
 gi|157938191|gb|EDO93861.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169651879|gb|EDS84572.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           S13]
 gi|184211690|gb|EDU08733.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1655]
 gi|217397246|gb|EEC37262.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           576]
 gi|242139762|gb|EES26164.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106b]
 gi|254216682|gb|EET06066.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1710a]
          Length = 279

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|332291348|ref|YP_004429957.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332169434|gb|AEE18689.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 209

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 155 LRDRLWEIGLLAAYQAN-----MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           L + L E+ L   Y  N     + KS + +  KD  L  RE+E +       T +EIA +
Sbjct: 113 LENALNELALNGYYHTNTVSQLLVKSLNGN-NKD-ALRDREIEFIKHACTEMTYNEIADV 170

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +S  TV  Y  S+  K   K R+G + YA++N +
Sbjct: 171 MFLSPKTVQGYRDSVFSKLNLKNRTGLVIYALKNGL 206


>gi|328886123|emb|CCA59362.1| putative LuxR-family transcriptional regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 271

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + LT ++ G T+   A  LG+   TV  Y+ S MRK    TR
Sbjct: 210 LTPRERDVLTAVASGATNATAATRLGLRPETVKGYLRSAMRKLGAHTR 257


>gi|307565431|ref|ZP_07627920.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
 gi|307345881|gb|EFN91229.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
          Length = 200

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S    YAV
Sbjct: 131 KNKLLSNREIEVLSLIVQGMINKEIADKLNISLTTVITHRKNIMDKLGMRSVSALTIYAV 190

Query: 242 RNNIV 246
            +  V
Sbjct: 191 MHGYV 195


>gi|253687834|ref|YP_003017024.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754412|gb|ACT12488.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 245

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S GKT  EIA+IL I  +TV  +I ++++K        AI   V 
Sbjct: 180 FSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVE 236


>gi|222098587|ref|YP_002532645.1| two-component response regulator [Bacillus cereus Q1]
 gi|221242646|gb|ACM15356.1| two-component response regulator [Bacillus cereus Q1]
          Length = 217

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T +E+E L  I++GK++ +IA  L +S   V   +  + +K    +RS A+A AVR  I
Sbjct: 153 ITQKELEILESIAKGKSNKQIADELYMSSRAVEYNLTKLFKKFKVSSRSEALAEAVRKGI 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|83721051|ref|YP_441647.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167580458|ref|ZP_02373332.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|257139656|ref|ZP_05587918.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83654876|gb|ABC38939.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 279

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|3868876|dbj|BAA34262.1| response regulator [Rhodococcus erythropolis]
          Length = 209

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE+E +  ++ G T+ E+A  L +S  TV ++ ASI RK   +TR+
Sbjct: 148 LSARELEVMRMVAAGLTTSEVAERLTVSPRTVESHRASIQRKLHVRTRA 196


>gi|293194682|ref|ZP_06610050.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
 gi|292819661|gb|EFF78680.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
          Length = 213

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L  +  G T  +IA  LG+S+ TV N+++S M K   +TR
Sbjct: 153 LTDREADVLREVEGGGTIADIAHSLGLSQGTVRNHVSSSMLKMDARTR 200


>gi|295677054|ref|YP_003605578.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
 gi|295436897|gb|ADG16067.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
          Length = 181

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    +  GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISPRTVDVYRARLMRKYDT 168


>gi|253701702|ref|YP_003022891.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251776552|gb|ACT19133.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 223

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++EG ++ +IA  + +S  TV N+  ++M+K    ++   + YA R  +
Sbjct: 157 LTPREQQVLRLVAEGSSTRQIAAAIELSPKTVENHRTNLMKKLDVHSKMELVKYAARLGL 216

Query: 246 V 246
           +
Sbjct: 217 I 217


>gi|154508409|ref|ZP_02044051.1| hypothetical protein ACTODO_00906 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798043|gb|EDN80463.1| hypothetical protein ACTODO_00906 [Actinomyces odontolyticus ATCC
           17982]
          Length = 213

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L  +  G T  +IA  LG+S+ TV N+++S M K   +TR
Sbjct: 153 LTDREADVLREVEGGGTIADIAHSLGLSQGTVRNHVSSSMLKMDARTR 200


>gi|126435625|ref|YP_001071316.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|126235425|gb|ABN98825.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 218

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G T+ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 157 LTERETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216


>gi|317473872|ref|ZP_07933152.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909949|gb|EFV31623.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 223

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIAV   +S +T+N++  +I RK        A  YA++  I
Sbjct: 156 LTPAERSILKEIALGKTTKEIAVERNLSFHTINSHRKNIFRKLGVNNAHEATKYAMKAGI 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|326778684|ref|ZP_08237949.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
 gi|326659017|gb|EGE43863.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
          Length = 400

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +ELT RE E   +I+ G  + EIA  L +S +TV ++I ++  K    +R 
Sbjct: 301 YELTDRETEVTQFIARGLPTGEIAAQLRLSPHTVRDHIKAVFEKVGVSSRG 351


>gi|262172512|ref|ZP_06040190.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451]
 gi|261893588|gb|EEY39574.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451]
          Length = 214

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G ++ +IA  L IS  TV +++  I +K   K R  AIA+  +N
Sbjct: 154 DLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQN 212


>gi|256784144|ref|ZP_05522575.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 812

 Score = 38.5 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+GRE + L  ++   +++EIA  L +S NTV  ++ S  RK A   R  A+  A
Sbjct: 751 ELSGRERDVLRRLARMMSAEEIAADLYVSVNTVKTHLKSAYRKLAVNRRGDAVRRA 806


>gi|170078560|ref|YP_001735199.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886229|gb|ACA99942.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 251

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I +G ++ EIA  L I+  TV  ++ +I+ K     R+ A   A+R+ +
Sbjct: 190 LTDRELEVLQLIVDGCSNSEIAEHLFITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 249

Query: 246 V 246
           V
Sbjct: 250 V 250


>gi|167618566|ref|ZP_02387197.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
          Length = 279

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|152061176|dbj|BAF73632.1| putative transcription factor PsyR [Pseudomonas syringae pv.
           tabaci]
          Length = 232

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+
Sbjct: 178 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 230


>gi|1916865|gb|AAB52544.1| response regulator BpdT [Rhodococcus sp. M5]
          Length = 209

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE+E +  ++ G T+ E+A  L +S  TV ++ ASI RK   +TR+
Sbjct: 148 LSARELEVMRMVAAGLTTSEVAERLTVSPRTVESHRASIQRKLHVRTRA 196


>gi|83310970|ref|YP_421234.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945811|dbj|BAE50675.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 213

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I  G ++ EIA  L +   T+  ++  I +K   K RS A   AVR  +V
Sbjct: 149 TSREMEVLALIVAGASNKEIARQLDLQEVTIKLHLTRIFQKLGVKNRSHAAVTAVRGGLV 208


>gi|289768026|ref|ZP_06527404.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289698225|gb|EFD65654.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 895

 Score = 38.5 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+GRE + L  ++   +++EIA  L +S NTV  ++ S  RK A   R  A+  A
Sbjct: 834 ELSGRERDVLRRLARMMSAEEIAADLYVSVNTVKTHLKSAYRKLAVNRRGDAVRRA 889


>gi|258624077|ref|ZP_05719029.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|258583687|gb|EEW08484.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
          Length = 310

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D +LT RE E L  +  GK    IA ++GIS  TV  Y A +  K    ++   I  A
Sbjct: 224 GADLKLTARESEVLFLLLYGKKPQHIARVMGISIKTVEGYEAKLRSKFGALSKDQLIDLA 283

Query: 241 V 241
           +
Sbjct: 284 L 284


>gi|302561891|ref|ZP_07314233.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302479509|gb|EFL42602.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TGRE E L  ++ G T+ EIA  L +   TV +++++++ K   + R+ A+  A  +  V
Sbjct: 158 TGREGEVLRLMARGLTNAEIAAKLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217


>gi|240171004|ref|ZP_04749663.1| two-component transcriptional regulatory protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 218

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L ++++G ++ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 157 LTERETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216


>gi|269125504|ref|YP_003298874.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310462|gb|ACY96836.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 203

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE E +  I+ G+++ EIA  L +S  TV N++  I  K    +R+ AIA
Sbjct: 126 LSAREAEVMDLIATGRSNGEIARQLFLSEKTVKNHVNRIYAKLGVTSRASAIA 178


>gi|222081950|ref|YP_002541315.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726629|gb|ACM29718.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 260

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 159 LWEIGLLA------AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           + + GLLA      AY   +F S +   GK   LT RE ECL   +EG ++ EI+ I+  
Sbjct: 162 IADFGLLAHVFHETAYA--LFDSSERSVGK-MRLTERERECLRHSAEGLSAKEISRIIDR 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           S  TV  ++ S  +K   K R+ A+  A 
Sbjct: 219 SVPTVVMHLNSAAKKLGAKNRTQAVVRAT 247


>gi|261406784|ref|YP_003243025.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283247|gb|ACX65218.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 216

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +++ LT RE++    ++E K + EIA +L I+  TV NYI+ I  K     R+ AI
Sbjct: 150 QNYNLTPRELQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRTKAI 205


>gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110]
 gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110]
          Length = 232

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++
Sbjct: 169 IDLTPREQSVLDLVAEGLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 228

Query: 244 NI 245
            +
Sbjct: 229 GL 230


>gi|126440864|ref|YP_001058373.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           668]
 gi|126220357|gb|ABN83863.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           668]
          Length = 279

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|53726081|ref|YP_103403.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121601196|ref|YP_992504.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124385129|ref|YP_001026695.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126450323|ref|YP_001080022.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|167000332|ref|ZP_02266150.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254175606|ref|ZP_04882266.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254202076|ref|ZP_04908439.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254207407|ref|ZP_04913757.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254359829|ref|ZP_04976099.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52429504|gb|AAU50097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121230006|gb|ABM52524.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124293149|gb|ABN02418.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126243193|gb|ABO06286.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147746323|gb|EDK53400.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147751301|gb|EDK58368.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148029069|gb|EDK86974.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|160696650|gb|EDP86620.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|243063667|gb|EES45853.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 279

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|331010621|gb|EGH90677.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 87

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G +  TV+ + ++I RK    +   A+  A+R  
Sbjct: 23  QLTVKERQVLEWVAIGKSAWEISRIQGCTEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82

Query: 245 IV 246
           ++
Sbjct: 83  VI 84


>gi|298245015|ref|ZP_06968821.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297552496|gb|EFH86361.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 931

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  +++G T+ +IA  L +S  T   ++ASI+ K   + R  A+A A   +++
Sbjct: 872 TRREEEVLRLLAQGATNQDIARQLVVSLGTAKKHVASILSKLGAENRLQAVARAHERSLL 931


>gi|298250270|ref|ZP_06974074.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548274|gb|EFH82141.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 596

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           ++G L  Y + +  +  +   +    T RE E +  + +G ++ EIA  L IS  TV  +
Sbjct: 498 QLGNLTNYYSAVQTTPTLKHARRELFTQRENEVINLLLQGASNREIAAKLIISEGTVKKH 557

Query: 221 IASIMRKTATKTRSGAIA 238
           +A+I  K   K+R+ A+A
Sbjct: 558 VANICGKLEVKSRTQALA 575


>gi|294675445|ref|YP_003576061.1| LuxR family transcriptional regulator [Prevotella ruminicola 23]
 gi|294472990|gb|ADE82379.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23]
          Length = 213

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E E +  I++GKT+ EIA     S +T+  +  +I RK    T    I YA+R  +
Sbjct: 146 LTATEAEIVKAIAQGKTTKEIAEERFSSIHTITTHRKNIFRKLGINTAHELIKYAIRAGL 205

Query: 246 V 246
           V
Sbjct: 206 V 206


>gi|238764730|ref|ZP_04625673.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
 gi|238697021|gb|EEP89795.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
          Length = 219

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180
           G+D R   LT   AR  +  M+       +L+D   EI L    LAA    +F      +
Sbjct: 86  GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLAAKGEPVFSDEVAQY 145

Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 146 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 205

Query: 233 RSGA 236
           R  A
Sbjct: 206 RVAA 209


>gi|228984929|ref|ZP_04145099.1| Response regulator [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228774879|gb|EEM23275.1| Response regulator [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|167918297|ref|ZP_02505388.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
          Length = 279

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|260905221|ref|ZP_05913543.1| two component system response regulator [Brevibacterium linens BL2]
          Length = 260

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G+T+ EIA  L I+  TV  +++ I+ K   + R+ A+  A  + 
Sbjct: 193 DLTDREREILVLVARGQTNTEIAATLFIAVQTVKTHVSRILYKLDIRDRAQAVIAAYESG 252

Query: 245 IV 246
           +V
Sbjct: 253 LV 254


>gi|330995249|ref|ZP_08319160.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila
           YIT 11841]
 gi|329575966|gb|EGG57486.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila
           YIT 11841]
          Length = 209

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I  G T+ EIA  L I   TV ++  +IM K   ++ SG   YAV N  
Sbjct: 144 LSQREIEVLILIVRGLTNKEIADHLCIGTTTVISHRKNIMEKLNVRSVSGLTIYAVMNGY 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|307706263|ref|ZP_07643077.1| competence protein A [Streptococcus mitis SK321]
 gi|307618354|gb|EFN97507.1| competence protein A [Streptococcus mitis SK321]
          Length = 198

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L  +  G T D++   + +S+ TV+N++A+I  K     R  AI  A
Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIA 189


>gi|288926074|ref|ZP_06420002.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
 gi|288337114|gb|EFC75472.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
          Length = 208

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE+E L+ +++GK + EI   L I   TV  +  +I  K   K+ S    YAV
Sbjct: 143 LTDREIEVLSLVAQGKINKEIGETLNIGLTTVITHRKNIQEKLGLKSVSALTIYAV 198


>gi|284050884|ref|ZP_06381094.1| two-component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +LT RE+E L  I +G ++ EIA  L IS  TV N+++SI+ +   + R+
Sbjct: 152 DLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRT 201


>gi|229011126|ref|ZP_04168319.1| Response regulator [Bacillus mycoides DSM 2048]
 gi|229166685|ref|ZP_04294435.1| Response regulator [Bacillus cereus AH621]
 gi|228616682|gb|EEK73757.1| Response regulator [Bacillus cereus AH621]
 gi|228750009|gb|EEL99841.1| Response regulator [Bacillus mycoides DSM 2048]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|212640042|ref|YP_002316562.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561522|gb|ACJ34577.1| DNA-binding response regulator, NarL family, with truncated
           N-terminal REC domain [Anoxybacillus flavithermus WK1]
          Length = 165

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L   E+  L  +S   T+ +I+  L IS+ TV  +++S   K    +R+GAIA A+R  
Sbjct: 103 KLNDTEIRILQMVSNDFTNRQISEKLNISKRTVERHLSSCFEKLGAHSRAGAIAAAMRLK 162

Query: 245 IV 246
           ++
Sbjct: 163 LI 164


>gi|171911132|ref|ZP_02926602.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 235

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E    ISEGK++ +I   L IS  TV  + A I  K   +  +  + YAVR
Sbjct: 169 LSDREFEVFQLISEGKSTQQIGDALNISVKTVEVHRAHIREKLKLEDGASVLRYAVR 225


>gi|75763478|ref|ZP_00743197.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218896774|ref|YP_002445185.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
 gi|74489035|gb|EAO52532.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218541910|gb|ACK94304.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
          Length = 223

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 118 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 171

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 172 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 216


>gi|333023954|ref|ZP_08452018.1| putative CitB protein [Streptomyces sp. Tu6071]
 gi|332743806|gb|EGJ74247.1| putative CitB protein [Streptomyces sp. Tu6071]
          Length = 77

 Score = 38.5 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E +   + G T+ E A  LGIS+ TV+ ++    R+    T+S  +  AV   I
Sbjct: 15  LTPRQTEVVRLAALGLTAKETARRLGISKTTVDEHLTEARRRVGASTKSHLVGLAVAAGI 74

Query: 246 V 246
           V
Sbjct: 75  V 75


>gi|320533376|ref|ZP_08034066.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134393|gb|EFW26651.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 246

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 42/80 (52%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A  A+   S+      D  LT RE+E L  +++G ++ E+A  L +   T+  ++  +M+
Sbjct: 165 AGGASGHASFAGAASVDVALTSRELEVLRLLAQGMSNGEMARHLYVEPTTIKYHLTGLMQ 224

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           KT ++ R   + + +R  +V
Sbjct: 225 KTGSRDRLQTVLWGIRAGLV 244


>gi|307708433|ref|ZP_07644899.1| SalR [Streptococcus mitis NCTC 12261]
 gi|307615532|gb|EFN94739.1| SalR [Streptococcus mitis NCTC 12261]
          Length = 198

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L  +  G T D++   + +S+ TV+N++A+I  K     R  AI  A
Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIA 189


>gi|238791009|ref|ZP_04634737.1| LuxR family transcription regulatory protein [Yersinia
           frederiksenii ATCC 33641]
 gi|238720898|gb|EEQ12610.1| LuxR family transcription regulatory protein [Yersinia
           frederiksenii ATCC 33641]
          Length = 202

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           RE E L +I    +S+EIA  L +SR TVNN I +I RK+   ++   I
Sbjct: 154 REWEVLFYILHAFSSNEIAEKLHLSRRTVNNVIQNIYRKSGVTSKKQII 202


>gi|307153815|ref|YP_003889199.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984043|gb|ADN15924.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 744

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT  E+E L  I+EG +SDE+A  LGI+ N +  ++A+I+ +
Sbjct: 687 LTQTELEVLRLIAEGTSSDEMAQQLGITLNMIKTHLANILNR 728


>gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 232

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++
Sbjct: 169 IDLTPREQSVLDLVAEGLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 228

Query: 244 NIV 246
            + 
Sbjct: 229 GLT 231


>gi|149922133|ref|ZP_01910573.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
 gi|149817070|gb|EDM76552.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
          Length = 247

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++  I   LGIS +TV  ++ +++ K   ++R+ A+  A+R  +
Sbjct: 184 LTPREREVLELLADGLSNRNIGERLGISAHTVKFHVDALLDKLDARSRTQAVVQAIRRGL 243

Query: 246 V 246
           +
Sbjct: 244 L 244


>gi|126728963|ref|ZP_01744778.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37]
 gi|126710893|gb|EBA09944.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37]
          Length = 298

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT ++ E L  I  G    +IA  LG+S + V   +AS+  KT  + R+     A R  
Sbjct: 198 QLTAKQKELLCLIGHGMMDKQIAHKLGVSFSAVRQRLASVQAKTGAQNRADLAGLAARIG 257

Query: 245 IV 246
           +V
Sbjct: 258 LV 259


>gi|70731589|ref|YP_261330.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345888|gb|AAY93494.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 208

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+  L   + G+T+ EIA  + +S  TV+ Y   IM+K AT + S  +  A RN +
Sbjct: 148 LNDRELMVLQLFAMGQTNKEIAAGMFLSNKTVSTYKKRIMQKLATTSMSELVDMAKRNAL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|319937288|ref|ZP_08011695.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319807654|gb|EFW04247.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 67

 Score = 38.5 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E  T ++  KT+ +IA  L IS  TV N+I+++++K   ++R  A+
Sbjct: 5   LTKREKEIFTLLTFNKTTKQIAEELCISEKTVRNHISNVIQKLGVESRIQAV 56


>gi|293410555|ref|ZP_06654131.1| transcriptional regulator NarP [Escherichia coli B354]
 gi|293446543|ref|ZP_06662965.1| two-component system [Escherichia coli B088]
 gi|291323373|gb|EFE62801.1| two-component system [Escherichia coli B088]
 gi|291471023|gb|EFF13507.1| transcriptional regulator NarP [Escherichia coli B354]
          Length = 236

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 175 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 225


>gi|255008092|ref|ZP_05280218.1| putative transcriptional regulatory protein [Bacteroides fragilis
           3_1_12]
 gi|313145809|ref|ZP_07808002.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313134576|gb|EFR51936.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 225

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        AI YA+R  I
Sbjct: 158 LTPTEKIILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEAIKYAMRAGI 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|229029518|ref|ZP_04185599.1| Response regulator [Bacillus cereus AH1271]
 gi|228731800|gb|EEL82701.1| Response regulator [Bacillus cereus AH1271]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEEECKIDTSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|229059483|ref|ZP_04196866.1| Response regulator [Bacillus cereus AH603]
 gi|228719849|gb|EEL71441.1| Response regulator [Bacillus cereus AH603]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|209516681|ref|ZP_03265534.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
 gi|209502956|gb|EEA02959.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
          Length = 181

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    +  GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISPRTVDVYRARLMRKYDT 168


>gi|331699719|ref|YP_004335958.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954408|gb|AEA28105.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 313

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +LT  +AR+R  +  L     ++ RD  + + +  A    +    +V       LT RE
Sbjct: 204 AALTAAIARVRGPVRHL-----LVHRDATYALEMYRARSGVVVLHREV--APPAGLTVRE 256

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++ L  +++G ++ EIA  LG+   TV  ++  ++ KT  + R
Sbjct: 257 LQVLAALADGSSNGEIAGALGVGARTVATHVEHVLAKTGCRNR 299


>gi|315608347|ref|ZP_07883336.1| transcriptional regulator [Prevotella buccae ATCC 33574]
 gi|315249977|gb|EFU29977.1| transcriptional regulator [Prevotella buccae ATCC 33574]
          Length = 222

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE+E L+ +++GK + EI   L I   TV  +  +I  K   K+ S    YAV
Sbjct: 157 LTDREIEVLSLVAQGKINKEIGETLNIGLTTVITHRKNIQEKLGLKSVSALTIYAV 212


>gi|302557561|ref|ZP_07309903.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475179|gb|EFL38272.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 892

 Score = 38.5 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+GRE + L  ++   +++EIA  L +S NTV  ++ S+ RK +   R+ A+  A
Sbjct: 832 LSGRERDVLRRLARAMSTEEIAADLYVSVNTVKTHLKSVYRKLSVNRRNEAVRRA 886


>gi|293415492|ref|ZP_06658135.1| two-component system [Escherichia coli B185]
 gi|291433140|gb|EFF06119.1| two-component system [Escherichia coli B185]
          Length = 225

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214


>gi|293394993|ref|ZP_06639281.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera
           DSM 4582]
 gi|291422521|gb|EFE95762.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera
           DSM 4582]
          Length = 222

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 33/52 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT RE++ L  ++ G ++ ++AV L IS  TV  +I +++RK   ++R  A
Sbjct: 161 DLTERELDVLQEVARGMSNKQVAVQLHISEETVKVHIRNMLRKLDVRSRVAA 212


>gi|238791008|ref|ZP_04634736.1| LuxR family transcription regulatory protein [Yersinia
           frederiksenii ATCC 33641]
 gi|238720897|gb|EEQ12609.1| LuxR family transcription regulatory protein [Yersinia
           frederiksenii ATCC 33641]
          Length = 230

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 28/60 (46%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L +I    +S EIA  L +S  +VNN I  I  K     R  A+ Y   N I
Sbjct: 153 FSKREWEVLFYILHAFSSREIAKRLQLSSGSVNNIIQKIYSKAGVTNRRQAVEYCYENKI 212


>gi|238028111|ref|YP_002912342.1| putative DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237877305|gb|ACR29638.1| Putative DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 276

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 157 LSPRQAQIMRFVHMGNTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 209


>gi|297200745|ref|ZP_06918142.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197712315|gb|EDY56349.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 202

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S + K   + R 
Sbjct: 131 AADAISAGDSPLTVREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRH 190

Query: 235 GAIAYA 240
            A+  A
Sbjct: 191 AAVRLA 196


>gi|15802746|ref|NP_288773.1| transcriptional regulator NarP [Escherichia coli O157:H7 EDL933]
 gi|15832336|ref|NP_311109.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749599|ref|ZP_02774621.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4113]
 gi|168754943|ref|ZP_02779950.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4401]
 gi|168764687|ref|ZP_02789694.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4501]
 gi|168767816|ref|ZP_02792823.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4486]
 gi|168773087|ref|ZP_02798094.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4196]
 gi|168780045|ref|ZP_02805052.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4076]
 gi|168789011|ref|ZP_02814018.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC869]
 gi|168802408|ref|ZP_02827415.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC508]
 gi|195935573|ref|ZP_03080955.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807826|ref|ZP_03250163.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4206]
 gi|208812712|ref|ZP_03254041.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4045]
 gi|208820974|ref|ZP_03261294.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4042]
 gi|209398167|ref|YP_002271605.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4115]
 gi|217326666|ref|ZP_03442749.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. TW14588]
 gi|254794092|ref|YP_003078929.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223349|ref|ZP_05937630.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259101|ref|ZP_05951634.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283444|ref|YP_003500262.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7
           str. CB9615]
 gi|12516525|gb|AAG57328.1|AE005452_1 nitrate/nitrite response regulator (sensor NarQ) [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362551|dbj|BAB36505.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. Sakai]
 gi|187771336|gb|EDU35180.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4196]
 gi|188016073|gb|EDU54195.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4113]
 gi|189002090|gb|EDU71076.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4076]
 gi|189357613|gb|EDU76032.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4401]
 gi|189362901|gb|EDU81320.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4486]
 gi|189365348|gb|EDU83764.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4501]
 gi|189371341|gb|EDU89757.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC869]
 gi|189375588|gb|EDU94004.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC508]
 gi|208727627|gb|EDZ77228.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4206]
 gi|208733989|gb|EDZ82676.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4045]
 gi|208741097|gb|EDZ88779.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4042]
 gi|209159567|gb|ACI37000.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4115]
 gi|209765848|gb|ACI81236.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765850|gb|ACI81237.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765852|gb|ACI81238.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765854|gb|ACI81239.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765856|gb|ACI81240.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|217319033|gb|EEC27458.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. TW14588]
 gi|254593492|gb|ACT72853.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763317|gb|ADD57278.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7
           str. CB9615]
 gi|320192180|gb|EFW66825.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. EC1212]
 gi|320641261|gb|EFX10739.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           G5101]
 gi|320646534|gb|EFX15450.1| transcriptional regulator NarP [Escherichia coli O157:H- str.
           493-89]
 gi|320651905|gb|EFX20280.1| transcriptional regulator NarP [Escherichia coli O157:H- str. H
           2687]
 gi|320657630|gb|EFX25428.1| transcriptional regulator NarP [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663086|gb|EFX30399.1| transcriptional regulator NarP [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667986|gb|EFX34889.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326339547|gb|EGD63358.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. 1125]
 gi|326344008|gb|EGD67769.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. 1044]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|193068201|ref|ZP_03049165.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019]
 gi|192958480|gb|EDV88919.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|329938783|ref|ZP_08288179.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302274|gb|EGG46166.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L + ++G    EIA    ++  TV NY++S + K   + R  A+  A
Sbjct: 149 DSPLTAREAEVLEFAADGAPVAEIAERAALAEGTVRNYLSSAVSKLGVENRHAAVRLA 206


>gi|313675285|ref|YP_004053281.1| two component transcriptional regulator, luxr family [Marivirga
           tractuosa DSM 4126]
 gi|312941983|gb|ADR21173.1| two component transcriptional regulator, LuxR family [Marivirga
           tractuosa DSM 4126]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ RE E L  I +  ++ EIA  L IS  TV  +  ++M KT +KT +G + YA+ N
Sbjct: 152 ISKREKEVLRLIIDELSNQEIADKLFISIRTVEAHKRNLMEKTGSKTLAGLVKYAINN 209


>gi|299538246|ref|ZP_07051531.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298726448|gb|EFI67038.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 206

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            + +   KD  L  +E + L  I+EG T+  IA+ L I + T   Y+  +       +R+
Sbjct: 135 KFKLQGAKDIHLNEKEKKILRLIAEGHTNKAIAIELNIPQRTTERYLTQLFSLLNVDSRT 194

Query: 235 GAIAYAVRNNIV 246
            A+  A R N++
Sbjct: 195 EAVNLAERMNLL 206


>gi|294631904|ref|ZP_06710464.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292835237|gb|EFF93586.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 203

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 180 WG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           WG  +  +T RE E L   ++G  + EIA  L ++R TV NY+ S + K   + R  AI 
Sbjct: 135 WGTAENPMTERETEVLRLAADGLEAGEIAKQLRLARGTVRNYLTSAVTKLLARNRVDAIR 194

Query: 239 YA 240
            A
Sbjct: 195 IA 196


>gi|289549975|ref|YP_003470879.1| Two-component response regulator [Staphylococcus lugdunensis
           HKU09-01]
 gi|315659398|ref|ZP_07912261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|289179507|gb|ADC86752.1| Two-component response regulator [Staphylococcus lugdunensis
           HKU09-01]
 gi|315495517|gb|EFU83849.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 217

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K++   + YA++  +
Sbjct: 155 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMSKLGLKSKPELVEYALKKKL 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|229155415|ref|ZP_04283525.1| Response regulator [Bacillus cereus ATCC 4342]
 gi|228628130|gb|EEK84847.1| Response regulator [Bacillus cereus ATCC 4342]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESREEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|126650450|ref|ZP_01722673.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592606|gb|EAZ86605.1| two-component response regulator [Bacillus sp. B14905]
          Length = 206

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            + +   KD  L  +E + L  I+EG T+  IA+ L I + T   Y+  +       +R+
Sbjct: 135 KFKLQSAKDIHLNEKEKKILRLIAEGHTNKAIAIELNIPQRTTERYLTQLFSLLNVDSRT 194

Query: 235 GAIAYAVRNNIV 246
            A+  A R N++
Sbjct: 195 EAVNLAERMNLL 206


>gi|82544573|ref|YP_408520.1| transcriptional regulator NarP [Shigella boydii Sb227]
 gi|81245984|gb|ABB66692.1| nitrate/nitrite response regulator [Shigella boydii Sb227]
 gi|320185869|gb|EFW60619.1| Nitrate/nitrite response regulator protein [Shigella flexneri CDC
           796-83]
 gi|332093584|gb|EGI98642.1| response regulator [Shigella boydii 3594-74]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|302337733|ref|YP_003802939.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634918|gb|ADK80345.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 217

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E L +I +G  + EI+ IL +S  TVN Y   I  K    T +    YAV+
Sbjct: 154 LSDREFEVLEYIGQGYGASEISRILNLSVKTVNTYRDHIKEKMNFDTAAAIRRYAVK 210


>gi|307730408|ref|YP_003907632.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|323526742|ref|YP_004228895.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|307584943|gb|ADN58341.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003]
 gi|323383744|gb|ADX55835.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001]
          Length = 181

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    +  GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISPRTVDVYRARLMRKYDT 168


>gi|239942524|ref|ZP_04694461.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988988|ref|ZP_04709652.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 206

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S   K   + R 
Sbjct: 135 AADAISAGDSPLTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAASKIGAENRH 194

Query: 235 GAIAYA 240
            A+  A
Sbjct: 195 TAVRLA 200


>gi|238059474|ref|ZP_04604183.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881285|gb|EEP70113.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 204

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   +EG    EIA  L ++  TV N++++IM KT  + R  A+  A
Sbjct: 144 LTRREREVLREAAEGVPLKEIARRLFLAHGTVRNHLSAIMHKTGARNRMEAVRLA 198


>gi|297562061|ref|YP_003681035.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846509|gb|ADH68529.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 218

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  +++G    +IA  LGIS  TV N++ + + K     R   + YA+   
Sbjct: 156 ELTPRETEVLRLVAKGLAYKQIAQRLGISHRTVQNHVQNTLTKLHLHNRVELVRYAIDRG 215

Query: 245 I 245
           +
Sbjct: 216 L 216


>gi|251798213|ref|YP_003012944.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247545839|gb|ACT02858.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 243

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            T RE+E +  I+ G ++ EI+  L IS  T  NYI SI+ KT  + R+    Y
Sbjct: 179 FTERELEIMAQIARGLSNKEISKKLFISEGTTANYITSILNKTGLEHRTQIAIY 232


>gi|204929147|ref|ZP_03220290.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321691|gb|EDZ06890.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|256786460|ref|ZP_05524891.1| LuxR family two component system response regulator [Streptomyces
           lividans TK24]
          Length = 204

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 29/63 (46%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    ++  TV NY++S   K   + R 
Sbjct: 133 AADAISAGDSPLTAREAEVLEHAADGAPVSEIAERAALAEGTVRNYLSSAASKLGAENRH 192

Query: 235 GAI 237
            A+
Sbjct: 193 AAV 195


>gi|225022693|ref|ZP_03711885.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682229|ref|ZP_07405033.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
 gi|224944601|gb|EEG25810.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658702|gb|EFM48205.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 223

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE   L  I+ G T+ EIA    +S  TV  ++  I+ KT ++ R  A+ +A R  
Sbjct: 151 ELTPRETVILRLIALGLTNQEIADHEYVSMATVKTHVRHILMKTNSRDRVHAVLFAYRTG 210

Query: 245 IV 246
           +V
Sbjct: 211 VV 212


>gi|119715190|ref|YP_922155.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535851|gb|ABL80468.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 216

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT +E++ L +I+EG T+ +I   + ++  TV NY++SI+ K   + R+ A   A +
Sbjct: 155 ELTEQELKLLGYIAEGLTNRQIGERMYLAEKTVKNYVSSILAKLGLERRTQAAVLASK 212


>gi|331653626|ref|ZP_08354627.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M718]
 gi|331048475|gb|EGI20551.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M718]
          Length = 225

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214


>gi|328883635|emb|CCA56874.1| putative two-component system response transcriptional regulator
           [Streptomyces venezuelae ATCC 10712]
          Length = 219

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E + L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  R
Sbjct: 157 LTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 213


>gi|326330564|ref|ZP_08196871.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325951639|gb|EGD43672.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 205

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G T+ EIA  L ++  TV +++A I  K    +RS AI  A    +
Sbjct: 145 LTDREIEVLRHLARGATNREIARTLFVTEATVKSHLAHIFTKLDVDSRSRAIHVAQETGL 204

Query: 246 V 246
           +
Sbjct: 205 I 205


>gi|324997109|ref|ZP_08118221.1| two component transcriptional regulator, LuxR family protein
           [Pseudonocardia sp. P1]
          Length = 126

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LTGRE+E L  ++ G T+ EIA  L I+  TV  ++A I  K     R+
Sbjct: 55  LTGRELEVLQVLAAGATNKEIAARLFIAPKTVGAHLARIFAKLGVTNRT 103


>gi|120436972|ref|YP_862658.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117579122|emb|CAL67591.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 205

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LTGR+ E L  I +G+T+ EIA  L I + TV  +  +++RK   +     + YA+   
Sbjct: 144 LTGRQREILKLIGQGRTNQEIADQLFIGKTTVETHRKNMIRKLGLQGAGELLRYALEKK 202


>gi|260906661|ref|ZP_05914983.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 216

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE+E L  ++ G ++ EIA  L +   TV  ++++++ K   + R   + +A +N +
Sbjct: 154 LTGRELEVLHLVAGGLSNSEIAGRLFVGEATVKTHVSNLLTKLDIRDRIHVVIFAYQNGV 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|239940280|ref|ZP_04692217.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986761|ref|ZP_04707425.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291443713|ref|ZP_06583103.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346660|gb|EFE73564.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 214

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+  V
Sbjct: 156 REREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAV 213


>gi|257791860|ref|YP_003182466.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257475757|gb|ACV56077.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 191

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 163 GLLAAY--QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           GL+  Y  +    +S   H  + F+LT RE E L  + +G T  EIA  L +S +TV  +
Sbjct: 106 GLVDRYRTEEGSIESRCAHAARTFDLTRREEEVLALLLKGCTRSEIARELFVSGDTVKTH 165

Query: 221 IASIMRKTA 229
           I ++ RKT 
Sbjct: 166 IRNLYRKTG 174


>gi|167586004|ref|ZP_02378392.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 281

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 158 LSPRQAQIMRFVHMGNTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 210


>gi|21954776|ref|NP_665760.1| ANL19 [Synechococcus elongatus PCC 7942]
 gi|81230363|ref|YP_398745.1| response regulator receiver domain-containing protein
           [Synechococcus elongatus PCC 7942]
 gi|21913198|gb|AAM81148.1|AF441790_19 ANL19 [Synechococcus elongatus PCC 7942]
 gi|1575686|gb|AAB38785.1| putative NarL homolog [Synechococcus elongatus PCC 7942]
 gi|81170335|gb|ABB58673.1| response regulator receiver domain protein (CheY-like)
           [Synechococcus elongatus PCC 7942]
          Length = 235

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 85/232 (36%), Gaps = 49/232 (21%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
           P + T+  T+ M  ++EY G       RW ++           D   +L    A    D 
Sbjct: 16  PTEQTLRLTV-MDNISEYFGVQ-----RWGIYL---------LDTNNNLASVEAKGVSDT 60

Query: 98  YYNVLQRPTELFCPVFHTLPENITP-------PAG------MDNRYCSLTFDVARIRIGL 144
           +    QR  +   PV   + EN  P       P G      +  R CS T D   I  G 
Sbjct: 61  FIEQYQRFGKAVDPVLKYVLENHAPAHEELVLPEGTWKQSELYQRCCS-THDHEHIMTGP 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQ------------------ANMFKSYDVHWGKDFEL 186
             L  +G++I       IG + A+                   A + K + V       L
Sbjct: 120 --LVGQGQLIGTINFARIGHIPAFNHLELASLGAVCTHFSARLAELRKPHSVSGQISNRL 177

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           T RE++    +++G T+ EI   L I+ N+V   +  I RK     R+  +A
Sbjct: 178 TSREIQIANLVAKGLTNAEIGAELWITHNSVKQALKRIFRKLEVSARTEMVA 229


>gi|146280078|ref|YP_001170235.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558319|gb|ABP72930.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 243

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 31/64 (48%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  LT R+ E L  +  G ++ EIA  L IS  TV  ++  +MRK     R+     A
Sbjct: 168 GLDMPLTDRQNEVLRSLGAGASNKEIARQLSISEATVKIHVRHLMRKYGVSNRTQVAILA 227

Query: 241 VRNN 244
           +R  
Sbjct: 228 MRKT 231


>gi|312141565|ref|YP_004008901.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311890904|emb|CBH50223.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 283

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEGKTSDEIAVILGI 212
           DRL +  L A  +A   K   +  G     +  L+ RE E L  ++ G  + EIA  LG+
Sbjct: 189 DRLDDAALTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAERLGL 248

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +T+ +Y+ +IM K    +R  A+  A R  ++
Sbjct: 249 RLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282


>gi|294813520|ref|ZP_06772163.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|326442073|ref|ZP_08216807.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294326119|gb|EFG07762.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 252

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G  +  IA  LGI   TV N+I S+  K   + R+ A+  A  + +
Sbjct: 184 LTPRETEVLRLIATGLDNTGIAEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGL 243

Query: 246 V 246
           V
Sbjct: 244 V 244


>gi|256396518|ref|YP_003118082.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362744|gb|ACU76241.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 228

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE+E    I+EG ++ EIA  L I+  TV  Y++ I+ K   + R  A+  A R
Sbjct: 164 LTPRELEVFELIAEGLSNAEIAASLFITPETVKTYVSRILTKLDLRDRVQAVVLAYR 220


>gi|229023298|ref|ZP_04179807.1| Response regulator [Bacillus cereus AH1272]
 gi|228738003|gb|EEL88490.1| Response regulator [Bacillus cereus AH1272]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|218231951|ref|YP_002366521.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
 gi|218159908|gb|ACK59900.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
          Length = 229

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 124 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 177

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 178 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 222


>gi|171060765|ref|YP_001793114.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170778210|gb|ACB36349.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 239

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 166 AAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           AA  A +F  +     + +  EL  R +E L  +  G T+ EI+   G+S  TV NY++S
Sbjct: 162 AAPSAALFPRFPSSAMFDRVAELGARHLEILELVLSGCTNQEISNSTGLSLGTVKNYVSS 221

Query: 224 IMRKTATKTRSGAIA 238
           ++     ++RS  I+
Sbjct: 222 LLLALDVRSRSHLIS 236


>gi|148252434|ref|YP_001237019.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146404607|gb|ABQ33113.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +S+G  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 154 LTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 210


>gi|118470159|ref|YP_884886.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171446|gb|ABK72342.1| transcriptional regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 272

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 11/104 (10%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           + ++ +G  L  PK   IL  RL     LAA +             +  LT RE+E L  
Sbjct: 168 IHKVAVGETLCSPKVSAILLRRL---STLAAQREP--------APTELVLTRREIEILRM 216

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +  G+T+ EIA  L I+ +TV +++ +++ K    TR+ A A +
Sbjct: 217 LEAGRTNREIAEQLCIAVHTVKSHVHNLLAKLGVSTRAQAAALS 260


>gi|29831080|ref|NP_825714.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608194|dbj|BAC72249.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 224

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S  VH     ELT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+
Sbjct: 151 SASVHAAYG-ELTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRT 209

Query: 235 GAIAYAVRNNIV 246
            A  +A    +V
Sbjct: 210 QAAVFAYEARLV 221


>gi|16765574|ref|NP_461189.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62180821|ref|YP_217238.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161613039|ref|YP_001587004.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167992577|ref|ZP_02573674.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168242357|ref|ZP_02667289.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261744|ref|ZP_02683717.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466061|ref|ZP_02699931.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194449116|ref|YP_002046301.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197265746|ref|ZP_03165820.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|200388108|ref|ZP_03214720.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|238913787|ref|ZP_04657624.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|16420784|gb|AAL21148.1| response regulator in two-component regulatory system with NarQ (or
           NarX) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|62128454|gb|AAX66157.1| response regulator in two-component regulatory system with NarQ (or
           NarX) [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362403|gb|ABX66171.1| hypothetical protein SPAB_00746 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407420|gb|ACF67639.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195631360|gb|EDX49920.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197244001|gb|EDY26621.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|199605206|gb|EDZ03751.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205329245|gb|EDZ16009.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205338346|gb|EDZ25110.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205349503|gb|EDZ36134.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|261247456|emb|CBG25283.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994331|gb|ACY89216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158805|emb|CBW18318.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913237|dbj|BAJ37211.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321224903|gb|EFX49966.1| Nitrate/nitrite response regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322715299|gb|EFZ06870.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|332989180|gb|AEF08163.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|331694203|ref|YP_004330442.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948892|gb|AEA22589.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 235

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I++G ++ EIA  L +   T+  ++  +  K   + R+ A+ YA R+ +
Sbjct: 174 LTPREVEVLALIAQGLSNREIARRLVVGEATIKTHVNHLFAKAGLRDRAQAVNYAYRHGL 233

Query: 246 V 246
            
Sbjct: 234 A 234


>gi|332715487|ref|YP_004442953.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062172|gb|ADY65862.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 492

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE + L+ I +G +  E++  L +S++T+ N+IAS+  K     R+ A+ +A
Sbjct: 426 DLTEREEQILSLICDGCSDKEMSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIWA 481


>gi|294631146|ref|ZP_06709706.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           sp. e14]
 gi|292834479|gb|EFF92828.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           sp. e14]
          Length = 290

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           F+L+ RE E +  I+ G T+ +IA    IS  TV N+I  I  K  + +R+ A A
Sbjct: 219 FQLSTREAEIMDLIASGMTNHQIAAACFISEKTVKNHINRIFAKLHSTSRAEAAA 273


>gi|302552997|ref|ZP_07305339.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
 gi|302470615|gb|EFL33708.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
          Length = 227

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + 
Sbjct: 161 DLTERETEVLALIAQGLSNAEIARHLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 220

Query: 245 IV 246
           +V
Sbjct: 221 LV 222


>gi|241764572|ref|ZP_04762589.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241365975|gb|EER60596.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 237

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  I  G ++ EIA +L I+  TV  ++  I+RK    +R  A  YA
Sbjct: 178 LSPREEEVLREIVRGASNKEIARVLDIAETTVKIHVQHILRKLGLSSRVQAAVYA 232


>gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 233

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++
Sbjct: 170 IDLTPREQSVLDLVAEGLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 229

Query: 244 NI 245
            +
Sbjct: 230 GL 231


>gi|302545152|ref|ZP_07297494.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462770|gb|EFL25863.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 201

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L   SEG+ +  IA  L +S  TV NY+ S + K   + R  AI  A
Sbjct: 141 LTPRELEVLRMASEGEEAARIAARLFLSVGTVRNYLTSAVTKLDARNRVDAIRIA 195


>gi|229160795|ref|ZP_04288786.1| Response regulator [Bacillus cereus R309803]
 gi|228622643|gb|EEK79478.1| Response regulator [Bacillus cereus R309803]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI SI+ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSILGKTGLEHRTQIAIY 205


>gi|226303587|ref|YP_002763545.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226182702|dbj|BAH30806.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 205

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L  ++ G+++ EI   L +S  TV +++  I  K   K+R+ A+A A
Sbjct: 145 LSPREIEVLKLVAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARA 199


>gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 232

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ 
Sbjct: 170 DLTPREQSVLDLVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHG 229

Query: 245 IV 246
           + 
Sbjct: 230 LT 231


>gi|226195323|ref|ZP_03790912.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pakistan 9]
 gi|254298568|ref|ZP_04966020.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           406e]
 gi|157808332|gb|EDO85502.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           406e]
 gi|225932525|gb|EEH28523.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pakistan 9]
          Length = 275

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 155 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 207


>gi|29345566|ref|NP_809069.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571711|ref|ZP_04849117.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|298384488|ref|ZP_06994048.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|29337458|gb|AAO75263.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838919|gb|EES67004.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|298262767|gb|EFI05631.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 220

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 150 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 209

Query: 243 NNIV 246
             IV
Sbjct: 210 AGIV 213


>gi|16761174|ref|NP_456791.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141132|ref|NP_804474.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412856|ref|YP_149931.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|168229605|ref|ZP_02654663.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236420|ref|ZP_02661478.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168818030|ref|ZP_02830030.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194471476|ref|ZP_03077460.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736026|ref|YP_002115321.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197250575|ref|YP_002147204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197361787|ref|YP_002141423.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|213028722|ref|ZP_03343169.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213051724|ref|ZP_03344602.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213418242|ref|ZP_03351308.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426294|ref|ZP_03359044.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213622209|ref|ZP_03374992.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213649802|ref|ZP_03379855.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289812587|ref|ZP_06543216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289824610|ref|ZP_06544153.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25298773|pir||AD0787 nitrate/nitrite response regulator protein NarP STY2472 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503473|emb|CAD07478.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136758|gb|AAO68323.1| nitrate/nitrite response regulator protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56127113|gb|AAV76619.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194457840|gb|EDX46679.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711528|gb|ACF90749.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197093263|emb|CAR58709.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214278|gb|ACH51675.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197290466|gb|EDY29821.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|205335871|gb|EDZ22635.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205344893|gb|EDZ31657.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|322615257|gb|EFY12179.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617847|gb|EFY14743.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624558|gb|EFY21389.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626991|gb|EFY23787.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634176|gb|EFY30912.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635631|gb|EFY32341.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640233|gb|EFY36897.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646344|gb|EFY42856.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649311|gb|EFY45747.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656431|gb|EFY52720.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661159|gb|EFY57386.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665703|gb|EFY61887.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667229|gb|EFY63396.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671234|gb|EFY67362.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675125|gb|EFY71202.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680733|gb|EFY76768.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686908|gb|EFY82885.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192673|gb|EFZ77900.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198895|gb|EFZ83994.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323205094|gb|EFZ90072.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208137|gb|EFZ93081.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211120|gb|EFZ95970.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215837|gb|EGA00580.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221856|gb|EGA06256.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223671|gb|EGA07980.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231283|gb|EGA15398.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233716|gb|EGA17808.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237788|gb|EGA21848.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245769|gb|EGA29763.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246491|gb|EGA30470.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252610|gb|EGA36449.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255334|gb|EGA39107.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259569|gb|EGA43204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266066|gb|EGA49559.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272760|gb|EGA56164.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|124268678|ref|YP_001022682.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124261453|gb|ABM96447.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 226

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    ++ GK+  EIA  L +S NTV+ Y A I+ KT  +       YAVR  +
Sbjct: 164 LSHREYQVFGLLAAGKSVGEIAEQLVLSSNTVSTYRARILEKTGVRNDVELALYAVRQEL 223

Query: 246 V 246
           +
Sbjct: 224 M 224


>gi|325286907|ref|YP_004262697.1| LuxR family two component transcriptional regulator [Cellulophaga
           lytica DSM 7489]
 gi|324322361|gb|ADY29826.1| two component transcriptional regulator, LuxR family [Cellulophaga
           lytica DSM 7489]
          Length = 209

 Score = 38.5 bits (88), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 30/43 (69%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +L+ RE+E L  ++ GK + ++A+ LG++  T++ Y A +M+K
Sbjct: 148 KLSTREIEVLKMLASGKRNKDVALGLGLNEKTISTYKARLMKK 190


>gi|291445985|ref|ZP_06585375.1| luxR family two component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291348932|gb|EFE75836.1| luxR family two component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 200

 Score = 38.5 bits (88), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S   K   + R 
Sbjct: 129 AADAISAGDSPLTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAASKIGAENRH 188

Query: 235 GAIAYA 240
            A+  A
Sbjct: 189 TAVRLA 194


>gi|302559284|ref|ZP_07311626.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302476902|gb|EFL39995.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 223

 Score = 38.5 bits (88), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E +  +++G ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +
Sbjct: 157 LTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|167554141|ref|ZP_02347882.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442551|ref|YP_002041509.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|198244741|ref|YP_002216317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207857666|ref|YP_002244317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194401214|gb|ACF61436.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197939257|gb|ACH76590.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205321582|gb|EDZ09421.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|206709469|emb|CAR33813.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|86140782|ref|ZP_01059341.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis
           MED217]
 gi|85832724|gb|EAQ51173.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis
           MED217]
          Length = 211

 Score = 38.5 bits (88), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E +       T  +IA  + +S  TV  Y  ++ +K   K R+G + YA++NNI
Sbjct: 149 LKEREIEFIKHACTEMTYKQIAEKMFLSPKTVEGYREAVFQKLGLKNRTGLVIYAIKNNI 208


>gi|116749099|ref|YP_845786.1| two component LuxR family transcriptional regulator
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698163|gb|ABK17351.1| two component transcriptional regulator, LuxR family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 218

 Score = 38.5 bits (88), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG  + +IA  L IS  TV  + A++M+K    + S   A+A+   +
Sbjct: 156 LTQREKEILKMIAEGYKNKDIADYLCISAKTVEKHRANLMKKLDLHSASSLTAFAMEKGL 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|330807408|ref|YP_004351870.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375516|gb|AEA66866.1| Putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 253

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL   +EG T+ +IA  L  S  T+  ++ S M K   + R  A+  AV   +
Sbjct: 191 LTKRERECLRLAAEGLTAADIARQLNRSLATITLHLTSAMHKLGARNRVQAVVRAVHYRL 250

Query: 246 V 246
           +
Sbjct: 251 L 251


>gi|324999632|ref|ZP_08120744.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Pseudonocardia sp. P1]
          Length = 200

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L     G+++ +IA  L ++  TV N+I++ +RK A  TR  A+  A
Sbjct: 140 LTDRELDVLRAGRRGESTQQIARALSLAPGTVRNHISAGLRKLAVDTRQQAVLVA 194


>gi|293405659|ref|ZP_06649651.1| transcriptional regulator NarP [Escherichia coli FVEC1412]
 gi|298381341|ref|ZP_06990940.1| two-component system [Escherichia coli FVEC1302]
 gi|300819110|ref|ZP_07099312.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 107-1]
 gi|300822646|ref|ZP_07102784.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 119-7]
 gi|300897746|ref|ZP_07116140.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 198-1]
 gi|300902154|ref|ZP_07120155.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 84-1]
 gi|300926301|ref|ZP_07142103.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 182-1]
 gi|300930429|ref|ZP_07145837.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 187-1]
 gi|300935141|ref|ZP_07150171.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 21-1]
 gi|300950044|ref|ZP_07163991.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 116-1]
 gi|300956848|ref|ZP_07169109.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 175-1]
 gi|301022495|ref|ZP_07186371.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 69-1]
 gi|301307196|ref|ZP_07213220.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 124-1]
 gi|301647050|ref|ZP_07246881.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 146-1]
 gi|309793076|ref|ZP_07687504.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 145-7]
 gi|331642822|ref|ZP_08343957.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H736]
 gi|331673712|ref|ZP_08374475.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA280]
 gi|331678147|ref|ZP_08378822.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H591]
 gi|332278650|ref|ZP_08391063.1| transcriptional regulator NarP [Shigella sp. D9]
 gi|291427867|gb|EFF00894.1| transcriptional regulator NarP [Escherichia coli FVEC1412]
 gi|298278783|gb|EFI20297.1| two-component system [Escherichia coli FVEC1302]
 gi|300316358|gb|EFJ66142.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 175-1]
 gi|300358520|gb|EFJ74390.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 198-1]
 gi|300397493|gb|EFJ81031.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 69-1]
 gi|300405747|gb|EFJ89285.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 84-1]
 gi|300417670|gb|EFK00981.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 182-1]
 gi|300450534|gb|EFK14154.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 116-1]
 gi|300459636|gb|EFK23129.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 21-1]
 gi|300461682|gb|EFK25175.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 187-1]
 gi|300524846|gb|EFK45915.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 119-7]
 gi|300528263|gb|EFK49325.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 107-1]
 gi|300837606|gb|EFK65366.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 124-1]
 gi|301074782|gb|EFK89588.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 146-1]
 gi|308123362|gb|EFO60624.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 145-7]
 gi|315252918|gb|EFU32886.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 85-1]
 gi|324020961|gb|EGB90180.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 117-3]
 gi|331039620|gb|EGI11840.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H736]
 gi|331068985|gb|EGI40377.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA280]
 gi|331074607|gb|EGI45927.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H591]
 gi|332101002|gb|EGJ04348.1| transcriptional regulator NarP [Shigella sp. D9]
          Length = 225

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214


>gi|284047067|ref|YP_003397407.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951288|gb|ADB54032.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 200

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE+E L  + EG ++  IA    ++  TV NY++S M K A  TR
Sbjct: 140 LTERELEVLRLVREGLSAGAIADAAHLAPGTVRNYLSSAMAKLAAPTR 187


>gi|290955012|ref|YP_003486194.1| luxR family two-component response regulator [Streptomyces scabiei
           87.22]
 gi|260644538|emb|CBG67623.1| putative luxR family two-component response regulator [Streptomyces
           scabiei 87.22]
          Length = 230

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LTGRE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A +
Sbjct: 164 LTGREREILALIGEGLTNRQIGQRLFLAEKTVKNHISRLLAKLGVERRVQAAVIATQ 220


>gi|281419799|ref|ZP_06250798.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
 gi|281406175|gb|EFB36855.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
          Length = 209

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ +++GK + EIA  L I   TV  +   I  K   K+ S    YAV +  
Sbjct: 144 LSDREIEVLSLVAQGKINKEIADQLCIGLTTVITHRKKIQEKLGLKSVSSLTIYAVMHGF 203

Query: 246 V 246
           V
Sbjct: 204 V 204


>gi|144898601|emb|CAM75465.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 217

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT R+ E L  + EGK++ EIA IL ++  TV  ++ +I++      R+ A+  A +
Sbjct: 153 LTPRQREVLGLLGEGKSNKEIARILELAEGTVKLHVTAILKALNVNNRTRAVVAAAQ 209


>gi|271967187|ref|YP_003341383.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510362|gb|ACZ88640.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+ G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    +
Sbjct: 161 LTEREMEVLRLIARGMSNAEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETGL 220

Query: 246 V 246
           +
Sbjct: 221 I 221


>gi|254462681|ref|ZP_05076097.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2083]
 gi|206679270|gb|EDZ43757.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 244

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +L+ RE E L W + GK+  +I VIL IS  TV  ++ S   K +  +   A+  A+
Sbjct: 180 QLSSRECEVLQWTAAGKSQIDIGVILTISSRTVEVHLRSARSKLSALSTPQAVGRAI 236


>gi|167562212|ref|ZP_02355128.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167569457|ref|ZP_02362331.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 279

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 231

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++
Sbjct: 168 IDLTPREQSVLDLVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKH 227

Query: 244 NIV 246
            + 
Sbjct: 228 GLT 230


>gi|39998319|ref|NP_954270.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39985265|gb|AAR36620.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
 gi|298507253|gb|ADI85976.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 229

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +  I EG TS +IA  L ++  TV N+  ++MRK    ++   + YA R  +
Sbjct: 159 LTPREQQVMRMIVEGATSRQIAESLELTLKTVENHRTNLMRKLQVHSKLELVRYAARLGL 218

Query: 246 V 246
           +
Sbjct: 219 I 219


>gi|74312714|ref|YP_311133.1| transcriptional regulator NarP [Shigella sonnei Ss046]
 gi|82776204|ref|YP_402553.1| transcriptional regulator NarP [Shigella dysenteriae Sd197]
 gi|157156289|ref|YP_001463544.1| transcriptional regulator NarP [Escherichia coli E24377A]
 gi|157161674|ref|YP_001458992.1| transcriptional regulator NarP [Escherichia coli HS]
 gi|170019493|ref|YP_001724447.1| transcriptional regulator NarP [Escherichia coli ATCC 8739]
 gi|170679777|ref|YP_001744386.1| transcriptional regulator NarP [Escherichia coli SMS-3-5]
 gi|187730582|ref|YP_001879462.1| transcriptional regulator NarP [Shigella boydii CDC 3083-94]
 gi|188495436|ref|ZP_03002706.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638]
 gi|191165388|ref|ZP_03027230.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A]
 gi|193062271|ref|ZP_03043366.1| nitrate/nitrite response regulator NarP [Escherichia coli E22]
 gi|194427123|ref|ZP_03059674.1| nitrate/nitrite response regulator NarP [Escherichia coli B171]
 gi|194436209|ref|ZP_03068311.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1]
 gi|209919652|ref|YP_002293736.1| transcriptional regulator NarP [Escherichia coli SE11]
 gi|218554761|ref|YP_002387674.1| transcriptional regulator NarP [Escherichia coli IAI1]
 gi|218695805|ref|YP_002403472.1| transcriptional regulator NarP [Escherichia coli 55989]
 gi|218700662|ref|YP_002408291.1| transcriptional regulator NarP [Escherichia coli IAI39]
 gi|218705722|ref|YP_002413241.1| transcriptional regulator NarP [Escherichia coli UMN026]
 gi|253772883|ref|YP_003035714.1| transcriptional regulator NarP [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162205|ref|YP_003045313.1| transcriptional regulator NarP [Escherichia coli B str. REL606]
 gi|256017639|ref|ZP_05431504.1| transcriptional regulator NarP [Shigella sp. D9]
 gi|256022125|ref|ZP_05435990.1| transcriptional regulator NarP [Escherichia sp. 4_1_40B]
 gi|260844795|ref|YP_003222573.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O103:H2 str.
           12009]
 gi|260856180|ref|YP_003230071.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O26:H11 str.
           11368]
 gi|260868909|ref|YP_003235311.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O111:H- str.
           11128]
 gi|297520422|ref|ZP_06938808.1| transcriptional regulator NarP [Escherichia coli OP50]
 gi|301024278|ref|ZP_07187969.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 196-1]
 gi|307138849|ref|ZP_07498205.1| transcriptional regulator NarP [Escherichia coli H736]
 gi|307311230|ref|ZP_07590874.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|309786632|ref|ZP_07681253.1| response regulator [Shigella dysenteriae 1617]
 gi|312973555|ref|ZP_07787727.1| response regulator [Escherichia coli 1827-70]
 gi|331663697|ref|ZP_08364607.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA143]
 gi|331668898|ref|ZP_08369746.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA271]
 gi|331683869|ref|ZP_08384465.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H299]
 gi|73856191|gb|AAZ88898.1| nitrate/nitrite response regulator [Shigella sonnei Ss046]
 gi|81240352|gb|ABB61062.1| nitrate/nitrite response regulator [Shigella dysenteriae Sd197]
 gi|157067354|gb|ABV06609.1| nitrate/nitrite response regulator NarP [Escherichia coli HS]
 gi|157078319|gb|ABV18027.1| nitrate/nitrite response regulator NarP [Escherichia coli E24377A]
 gi|169754421|gb|ACA77120.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|170517495|gb|ACB15673.1| nitrate/nitrite response regulator NarP [Escherichia coli SMS-3-5]
 gi|187427574|gb|ACD06848.1| nitrate/nitrite response regulator NarP [Shigella boydii CDC
           3083-94]
 gi|188490635|gb|EDU65738.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638]
 gi|190904551|gb|EDV64258.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A]
 gi|192931937|gb|EDV84536.1| nitrate/nitrite response regulator NarP [Escherichia coli E22]
 gi|194414744|gb|EDX31015.1| nitrate/nitrite response regulator NarP [Escherichia coli B171]
 gi|194424937|gb|EDX40922.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1]
 gi|209912911|dbj|BAG77985.1| nitrate/nitrite response regulator [Escherichia coli SE11]
 gi|218352537|emb|CAU98316.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli 55989]
 gi|218361529|emb|CAQ99120.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli IAI1]
 gi|218370648|emb|CAR18457.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli IAI39]
 gi|218432819|emb|CAR13713.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli UMN026]
 gi|242377829|emb|CAQ32596.1| narP [Escherichia coli BL21(DE3)]
 gi|253323927|gb|ACT28529.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974106|gb|ACT39777.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli B str. REL606]
 gi|253978273|gb|ACT43943.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BL21(DE3)]
 gi|257754829|dbj|BAI26331.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O26:H11 str.
           11368]
 gi|257759942|dbj|BAI31439.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O103:H2 str.
           12009]
 gi|257765265|dbj|BAI36760.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O111:H- str.
           11128]
 gi|284922185|emb|CBG35267.1| nitrate/nitrite response regulator protein [Escherichia coli 042]
 gi|299880482|gb|EFI88693.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 196-1]
 gi|306908736|gb|EFN39233.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|308925541|gb|EFP71027.1| response regulator [Shigella dysenteriae 1617]
 gi|309702505|emb|CBJ01831.1| nitrate/nitrite response regulator protein [Escherichia coli ETEC
           H10407]
 gi|310332150|gb|EFP99385.1| response regulator [Escherichia coli 1827-70]
 gi|315061500|gb|ADT75827.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli W]
 gi|315615453|gb|EFU96085.1| response regulator [Escherichia coli 3431]
 gi|320177206|gb|EFW52214.1| Nitrate/nitrite response regulator protein [Shigella dysenteriae
           CDC 74-1112]
 gi|320199790|gb|EFW74379.1| Nitrate/nitrite response regulator protein [Escherichia coli
           EC4100B]
 gi|323152251|gb|EFZ38541.1| response regulator [Escherichia coli EPECa14]
 gi|323161744|gb|EFZ47626.1| response regulator [Escherichia coli E128010]
 gi|323168652|gb|EFZ54332.1| response regulator [Shigella sonnei 53G]
 gi|323171865|gb|EFZ57509.1| response regulator [Escherichia coli LT-68]
 gi|323184184|gb|EFZ69561.1| response regulator [Escherichia coli 1357]
 gi|323377920|gb|ADX50188.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
 gi|323936807|gb|EGB33092.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940739|gb|EGB36927.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323945009|gb|EGB41074.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323961585|gb|EGB57192.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323972986|gb|EGB68182.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323977610|gb|EGB72696.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324117918|gb|EGC11817.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331059496|gb|EGI31473.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA143]
 gi|331064092|gb|EGI36003.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA271]
 gi|331078821|gb|EGI50023.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H299]
 gi|332343973|gb|AEE57307.1| response regulator protein [Escherichia coli UMNK88]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|333001333|gb|EGK20901.1| response regulator [Shigella flexneri VA-6]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|326772328|ref|ZP_08231613.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326638461|gb|EGE39362.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 240

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 9/122 (7%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF 184
           D R   L   +  +  G  ++ P+    +  R+ E+  G L + +A    S D       
Sbjct: 125 DTRPTELAEAIRTVASGEAVVSPR----ITQRMLEMFAGSLPSSEAPAQSSSDPRIDS-- 178

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +S+G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    
Sbjct: 179 -LTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETG 237

Query: 245 IV 246
           ++
Sbjct: 238 LM 239


>gi|259418825|ref|ZP_05742742.1| response regulator receiver protein [Silicibacter sp. TrichCH4B]
 gi|259345047|gb|EEW56901.1| response regulator receiver protein [Silicibacter sp. TrichCH4B]
          Length = 151

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE + L+ ++EGK +  IA  LG+S +TV  +I  ++ K     R+ A  + + 
Sbjct: 83  NIRLTTREAQVLSCVAEGKQNKLIANRLGLSEHTVKLHIHHVIAKLGVNNRTEAAVWFLE 142

Query: 243 NN 244
           N+
Sbjct: 143 NH 144


>gi|257789944|ref|YP_003180550.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257473841|gb|ACV54161.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 493

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A  Q +  ++   H  + +  T RE E L  + +G+T+  I+  L +S NTV  +I SI 
Sbjct: 406 AEQQGDALEARCAHVAETYGFTPRESEILVHLGQGRTARAISEKLVVSENTVKYHIKSIY 465

Query: 226 RKTATKTR 233
           +K    +R
Sbjct: 466 QKLDVHSR 473


>gi|256392635|ref|YP_003114199.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256358861|gb|ACU72358.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 227

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+GRE + L  IS G T  +IA  LGIS +TV+ Y+  I  K     ++
Sbjct: 154 LSGREAQVLRHISLGLTHGQIATRLGISPHTVDTYVKRIRSKLGAGNKA 202


>gi|218515607|ref|ZP_03512447.1| transcriptional activator protein [Rhizobium etli 8C-3]
          Length = 94

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE++CL   + G  + +I   L IS + V  Y+AS  RK    T S A+A A
Sbjct: 34  LSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARA 88


>gi|188533099|ref|YP_001906896.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99]
 gi|188028141|emb|CAO95998.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99]
          Length = 240

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            T RE E L W S GKT  E A+ILGI   TV  ++++I++K        AI
Sbjct: 176 FTERENEILYWASVGKTYPETAMILGIKTCTVKFHMSNIVKKLGVANARHAI 227


>gi|148239259|ref|YP_001224646.1| two component system response regulator [Synechococcus sp. WH 7803]
 gi|147847798|emb|CAK23349.1| Two component system response regulator [Synechococcus sp. WH 7803]
          Length = 235

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ELT RE+E    ++ G  ++ IA +LG+S  TV +++ + M K   + R+
Sbjct: 170 ELTPRELEVAAGVARGLKNNAIATLLGLSVETVKSHVGNAMDKLGARDRT 219


>gi|327313696|ref|YP_004329133.1| LuxR family transcriptional regulator [Prevotella denticola F0289]
 gi|326945245|gb|AEA21130.1| transcriptional regulator, LuxR family [Prevotella denticola F0289]
          Length = 209

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S    YAV
Sbjct: 144 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAV 199


>gi|300918841|ref|ZP_07135409.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 115-1]
 gi|300414022|gb|EFJ97332.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 115-1]
          Length = 225

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214


>gi|302529365|ref|ZP_07281707.1| response regulatory protein [Streptomyces sp. AA4]
 gi|302438260|gb|EFL10076.1| response regulatory protein [Streptomyces sp. AA4]
          Length = 211

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  +++G  + EIA  L IS  TV  ++  I  K    TR+GA+A A
Sbjct: 150 LTDRERDILEQLAQGLGNREIARRLFISEATVKTHLGRIYEKLGVDTRAGAVAVA 204


>gi|229172478|ref|ZP_04300037.1| Response regulator [Bacillus cereus MM3]
 gi|228610949|gb|EEK68212.1| Response regulator [Bacillus cereus MM3]
          Length = 212

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEDECKIDTSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|170767404|ref|ZP_02901857.1| nitrate/nitrite response regulator NarP [Escherichia albertii
           TW07627]
 gi|170123738|gb|EDS92669.1| nitrate/nitrite response regulator NarP [Escherichia albertii
           TW07627]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|161502599|ref|YP_001569710.1| transcriptional regulator NarP [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863946|gb|ABX20569.1| hypothetical protein SARI_00645 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 214

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|86158187|ref|YP_464972.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774698|gb|ABC81535.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 210

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E    ++  ++  EIA  L +S  TV+ Y   I+ K A ++ +  + YAVR+ +
Sbjct: 149 LSPRELEIFLQLAAARSVSEIAERLQLSVKTVSTYRGRILEKMALRSNAELMQYAVRHGL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|56477577|ref|YP_159166.1| putative two-component response regulator [Aromatoleum aromaticum
           EbN1]
 gi|56313620|emb|CAI08265.1| putative two-component response regulator [Aromatoleum aromaticum
           EbN1]
          Length = 208

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT  +   +  +++GK++ EIA +LG+S  TV  ++++I R     +R+ A+    R+
Sbjct: 145 FGLTAGQTRVMELLAQGKSNREIADLLGLSEGTVKVHMSAIFRALHVSSRAQALIVIARH 204

Query: 244 N 244
            
Sbjct: 205 G 205


>gi|163939641|ref|YP_001644525.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861838|gb|ABY42897.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 224

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 119 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEESKIDKSLFTERELSII 172

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 173 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 217


>gi|295840223|ref|ZP_06827156.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295827842|gb|EFG65645.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 206

 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+  L   +EG++   IA  L ++  TV NY+A+ +RKT  + R  AI  A
Sbjct: 146 LSDRELRVLGLAAEGESVAAIAGHLHLAAGTVRNYLAAAIRKTGARNRLDAIRLA 200


>gi|262401518|ref|ZP_06078085.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
 gi|262352233|gb|EEZ01362.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
          Length = 214

 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G ++ +IA  L IS  TV +++  I +K   K R  AIA+  +N
Sbjct: 154 DLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQN 212


>gi|229492199|ref|ZP_04386007.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229320825|gb|EEN86638.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 205

 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L  ++ G+++ EI   L +S  TV +++  I  K   K+R+ A+A A
Sbjct: 145 LSPREIEVLKLVAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARA 199


>gi|254473974|ref|ZP_05087367.1| two-component system regulatory protein [Pseudovibrio sp. JE062]
 gi|211956863|gb|EEA92070.1| two-component system regulatory protein [Pseudovibrio sp. JE062]
          Length = 268

 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)

Query: 180 WGKDF-----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +G DF      LT R+   LT++ EGK + +IA  LGIS  TV +++++++      +RS
Sbjct: 150 FGIDFYEGLANLTRRQATILTYLKEGKLNKQIAHELGISEATVKHHVSALLSTLGFYSRS 209

Query: 235 GAIA 238
             +A
Sbjct: 210 QLVA 213


>gi|271962480|ref|YP_003336676.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505655|gb|ACZ83933.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 207

 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  ++ G  + EIA  L I+  TV  ++  I  K    TR+ A+  AV   +
Sbjct: 144 LSAREVEILELLASGAGNREIARRLFITEATVKTHLVHIYGKLGVDTRTAAVTAAVERRL 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|166368457|ref|YP_001660730.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166090830|dbj|BAG05538.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 226

 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 39/67 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V    + ELT  E++ +  +++G  + EIA  L +S+ T+ +++++++ KT    R+   
Sbjct: 155 VQVQGNVELTPTELKVVQLVAQGLANREIAAKLNVSQRTIESHVSNMLHKTGLHNRTELS 214

Query: 238 AYAVRNN 244
            +A+ +N
Sbjct: 215 QWAIESN 221


>gi|15598909|ref|NP_252403.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107103228|ref|ZP_01367146.1| hypothetical protein PaerPA_01004297 [Pseudomonas aeruginosa PACS2]
 gi|116051711|ref|YP_789450.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890010|ref|YP_002438874.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254236624|ref|ZP_04929947.1| hypothetical protein PACG_02627 [Pseudomonas aeruginosa C3719]
 gi|254242406|ref|ZP_04935728.1| hypothetical protein PA2G_03153 [Pseudomonas aeruginosa 2192]
 gi|313109120|ref|ZP_07795091.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9949879|gb|AAG07101.1|AE004790_6 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115586932|gb|ABJ12947.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168555|gb|EAZ54066.1| hypothetical protein PACG_02627 [Pseudomonas aeruginosa C3719]
 gi|126195784|gb|EAZ59847.1| hypothetical protein PA2G_03153 [Pseudomonas aeruginosa 2192]
 gi|218770233|emb|CAW25995.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310881593|gb|EFQ40187.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 213

 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 170 ANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A++ +  +   GK      +LT REVE L     G    EIA+ L  S+ T++   +S M
Sbjct: 133 AHLLEVGEAEHGKPLASLEQLTPREVEVLRLYGSGLAVGEIAIRLCRSKQTISAQKSSAM 192

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RK    + +G   Y   N +
Sbjct: 193 RKLGLDSNAGLFIYIRENGL 212


>gi|333002916|gb|EGK22472.1| response regulator [Shigella flexneri K-272]
 gi|333016922|gb|EGK36246.1| response regulator [Shigella flexneri K-227]
          Length = 215

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|330888196|gb|EGH20857.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 87

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G +  TV+ + ++I RK    +   A+  A+R  
Sbjct: 23  QLTVKERQVLEWVAIGKSAWEISRIQGCTEATVHFHTSNIRRKFGVTSLKAALVMAIRQG 82

Query: 245 IV 246
           ++
Sbjct: 83  VI 84


>gi|325860035|ref|ZP_08173162.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
 gi|325482561|gb|EGC85567.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
          Length = 203

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S    YAV
Sbjct: 138 LSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAV 193


>gi|323529279|ref|YP_004231431.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323386281|gb|ADX58371.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 216

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVLKRIAAGQTITEIAAELCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|254510783|ref|ZP_05122850.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534494|gb|EEE37482.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 416

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE + L  +S+GK++  IA  LGI+ +TV  ++ ++  K     R+ A  +
Sbjct: 184 QLTRREKQVLRLVSQGKSNKTIAAKLGITEHTVKLHMHNVSGKIGVSNRTAAAHF 238


>gi|218297320|ref|ZP_03497945.1| transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23]
 gi|218242357|gb|EED08900.1| transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23]
          Length = 179

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 144 LMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           LM L P+G +    R  ++  GL    Q   F    +  G D  LT RE + L  ++ G 
Sbjct: 70  LMDLQPEGILATSARPEDVLEGLREVAQGRGFHKIPM-LGPD-SLTARERQVLRLVALGL 127

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            + +IA +LG+SR TV N+++++  K   + R
Sbjct: 128 CNADIARMLGVSRRTVYNWVSALQEKLGLENR 159


>gi|89899702|ref|YP_522173.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89344439|gb|ABD68642.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 217

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT R+ E L  I+EG+++ EIA  L ++  TV ++ + +M++      +G + YA+   
Sbjct: 152 QLTPRQREVLQLIAEGQSTKEIARRLDLAVKTVESHRSQLMKQLDIHEVAGLVRYAMHVG 211

Query: 245 IV 246
           +V
Sbjct: 212 VV 213


>gi|30063633|ref|NP_837804.1| transcriptional regulator NarP [Shigella flexneri 2a str. 2457T]
 gi|56480063|ref|NP_708089.2| transcriptional regulator NarP [Shigella flexneri 2a str. 301]
 gi|110806169|ref|YP_689689.1| transcriptional regulator NarP [Shigella flexneri 5 str. 8401]
 gi|30041886|gb|AAP17613.1| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri
           2a str. 2457T]
 gi|56383614|gb|AAN43796.2| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri
           2a str. 301]
 gi|110615717|gb|ABF04384.1| nitrate/nitrite response regulator [Shigella flexneri 5 str. 8401]
 gi|281601644|gb|ADA74628.1| Nitrate/nitrite response regulator [Shigella flexneri 2002017]
 gi|313651305|gb|EFS15703.1| response regulator [Shigella flexneri 2a str. 2457T]
 gi|332754834|gb|EGJ85199.1| response regulator [Shigella flexneri 4343-70]
 gi|332755237|gb|EGJ85601.1| response regulator [Shigella flexneri K-671]
 gi|332756240|gb|EGJ86591.1| response regulator [Shigella flexneri 2747-71]
 gi|332766006|gb|EGJ96216.1| response regulator [Shigella flexneri 2930-71]
 gi|333001907|gb|EGK21473.1| response regulator [Shigella flexneri K-218]
 gi|333016648|gb|EGK35977.1| response regulator [Shigella flexneri K-304]
          Length = 215

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|260063731|ref|YP_003196811.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea
           biformata HTCC2501]
 gi|88783176|gb|EAR14349.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea
           biformata HTCC2501]
          Length = 226

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +L+ REVE L  ++ GK + E+A+ L ++  TV+ Y A +M+K
Sbjct: 165 KLSTREVEVLKMLASGKRNKEVALGLNLNEKTVSTYKARLMKK 207


>gi|23006062|ref|ZP_00048562.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 195

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ++ G +++EIA  L +S +TV  +++ +M K   + R+  +  A  + 
Sbjct: 128 ELTPREREVLVEVAGGLSNEEIAGSLFLSESTVKTHVSRVMAKLGARDRAQLVVAAYESG 187

Query: 245 IV 246
           +V
Sbjct: 188 VV 189


>gi|323498997|ref|ZP_08103979.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|323315933|gb|EGA68962.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 210

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A Y A+   S DV      ELT RE++ L  +++G  + +IA  L IS +TV  ++ S+
Sbjct: 131 VAKYLADRENSSDVFD----ELTDREMQILREVAKGDRNKQIADTLFISESTVKVHMKSL 186

Query: 225 MRKTATKTRSGA 236
           ++K    +R+ A
Sbjct: 187 LKKLQVPSRTAA 198


>gi|307565420|ref|ZP_07627909.1| hemerythrin HHE cation binding domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345870|gb|EFN91218.1| hemerythrin HHE cation binding domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 318

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G  + EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 251 LSDREKEVIIALVQGMANKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|319761227|ref|YP_004125164.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317115788|gb|ADU98276.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 224

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+ RE E L  I+ G ++ EIA  L I+  TV  ++  I+RK    +R  A  YA
Sbjct: 162 QLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQAAVYA 217


>gi|326317305|ref|YP_004234977.1| LuxR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374141|gb|ADX46410.1| transcriptional regulator, LuxR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 264

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  L+ RE EC+   +EG  S +IA  L  + +T+  ++ S  RK   + R+  IA A 
Sbjct: 190 RDVALSDREHECVLLAAEGMPSKQIAARLNRAESTIVFHLQSAARKLGGRNRAQMIARAA 249


>gi|229494528|ref|ZP_04388291.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229318890|gb|EEN84748.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 222

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ +IA  L +S  TV N++ + +RK     R     YA+   +
Sbjct: 162 LTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|229820103|ref|YP_002881629.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566016|gb|ACQ79867.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 208

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           GR++L +R            ++ +    H      LT  E   L  ++EG T+ +IA  L
Sbjct: 122 GRVLLDER------------SLTRRRAAHEDPTSALTPSERRVLELVAEGLTNRDIAERL 169

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G++  TV N++ S++ K   + R+ A+A+
Sbjct: 170 GVAEKTVKNHVTSMLSKMGLQRRTQAVAW 198


>gi|212640439|ref|YP_002316959.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561919|gb|ACJ34974.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 213

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT  E+  L  I +G T  EIA  L IS  TV N+++ I++K + K    A+  A
Sbjct: 153 LTKTEISILKLIDQGYTQKEIANHLVISIQTVKNHVSRILKKLSAKNSKHAVCKA 207


>gi|194434215|ref|ZP_03066482.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012]
 gi|194417544|gb|EDX33646.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012]
 gi|320178834|gb|EFW53797.1| Nitrate/nitrite response regulator protein [Shigella boydii ATCC
           9905]
 gi|332093180|gb|EGI98240.1| response regulator [Shigella boydii 5216-82]
 gi|332096195|gb|EGJ01198.1| response regulator [Shigella dysenteriae 155-74]
          Length = 215

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|86740943|ref|YP_481343.1| ATP-dependent transcription regulator LuxR [Frankia sp. CcI3]
 gi|86567805|gb|ABD11614.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Frankia sp. CcI3]
          Length = 914

 Score = 38.1 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE++ L  +  G ++ EIA  LG++ NTV  Y+ SI  K     R  +++ A R  I
Sbjct: 853 LNAREIDILRLLDRGLSNKEIARNLGLTINTVKWYLKSIYTKLGVARRGESVSEARRRRI 912

Query: 246 V 246
           +
Sbjct: 913 L 913


>gi|26248576|ref|NP_754616.1| transcriptional regulator NarP [Escherichia coli CFT073]
 gi|91211483|ref|YP_541469.1| transcriptional regulator NarP [Escherichia coli UTI89]
 gi|117624388|ref|YP_853301.1| transcriptional regulator NarP [Escherichia coli APEC O1]
 gi|227887250|ref|ZP_04005055.1| transcriptional regulator NarP [Escherichia coli 83972]
 gi|237704666|ref|ZP_04535147.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA]
 gi|300981378|ref|ZP_07175493.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 200-1]
 gi|300982960|ref|ZP_07176392.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 45-1]
 gi|301048933|ref|ZP_07195926.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 185-1]
 gi|331647847|ref|ZP_08348939.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M605]
 gi|26108981|gb|AAN81184.1|AE016763_143 Nitrate/nitrite response regulator protein narP [Escherichia coli
           CFT073]
 gi|91073057|gb|ABE07938.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           UTI89]
 gi|115513512|gb|ABJ01587.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           APEC O1]
 gi|222033954|emb|CAP76695.1| Nitrate/nitrite response regulator protein narP [Escherichia coli
           LF82]
 gi|226901032|gb|EEH87291.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA]
 gi|227835600|gb|EEJ46066.1| transcriptional regulator NarP [Escherichia coli 83972]
 gi|300299309|gb|EFJ55694.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 185-1]
 gi|300307590|gb|EFJ62110.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 200-1]
 gi|300408653|gb|EFJ92191.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 45-1]
 gi|315285806|gb|EFU45246.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 110-3]
 gi|315298006|gb|EFU57275.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 16-3]
 gi|324013986|gb|EGB83205.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 60-1]
 gi|331043571|gb|EGI15709.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M605]
          Length = 225

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214


>gi|89068113|ref|ZP_01155530.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola
           granulosus HTCC2516]
 gi|89046352|gb|EAR52409.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola
           granulosus HTCC2516]
          Length = 228

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E LT++++G     +A +L IS +T+  YI S   K      + A+A A    +
Sbjct: 148 LSPREIEALTYLAQGYGRGRVADVLSISEHTLRAYIESARFKLGAANTTHAVARAAMEGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|119715261|ref|YP_922226.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535922|gb|ABL80539.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 218

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE+E    I++G ++ EI   L IS  TV  ++  + +K   + R+ AI  A +  I
Sbjct: 153 LTGRELEVFRLITQGLSNAEIGRELFISDTTVKTHVTRLFQKLDLRDRAQAIVLAYQTGI 212


>gi|319791685|ref|YP_004153325.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594148|gb|ADU35214.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 250

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E LT I+ G +  EIA + G+S +TV  +I ++  K A  ++S A+  A R
Sbjct: 186 LSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVFEATR 242


>gi|301053374|ref|YP_003791585.1| LuxR family response regulator [Bacillus anthracis CI]
 gi|300375543|gb|ADK04447.1| response regulator, LuxR family [Bacillus cereus biovar anthracis
           str. CI]
          Length = 212

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDTSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|317129068|ref|YP_004095350.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474016|gb|ADU30619.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 231

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 28/184 (15%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +  DLFQ Q +DS+   +    +V C AL+         Q  + L  PV           
Sbjct: 65  ISSDLFQYQ-IDSLKQENSQILIVSCNALTR--------QSLSFLSLPV----------- 104

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM---FKSYDVHW 180
               N   SL++      + L  LF KG  +  +   E+      + N    FK   ++ 
Sbjct: 105 ----NALLSLSYLEKNTNVVLRSLFTKGVFLEPNLHTELVTEIERKTNRSKPFKKLCLNI 160

Query: 181 GKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            K   + T +E E L  I +G  + EIA  L  + +TV+  I+SI++K     R+ A+  
Sbjct: 161 SKVASIFTKKEQEILQLILDGCNNGEIADKLFYANSTVSTNISSILKKMEANDRTEAMVK 220

Query: 240 AVRN 243
           A+RN
Sbjct: 221 AIRN 224


>gi|282855558|ref|ZP_06264874.1| transcriptional regulator, LuxR family protein [Pyramidobacter
           piscolens W5455]
 gi|282586593|gb|EFB91845.1| transcriptional regulator, LuxR family protein [Pyramidobacter
           piscolens W5455]
          Length = 220

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 163 GLLAAYQ----ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           G  + YQ      M +  D   G     T RE++ L  + E K+ +EI  +L +S +++ 
Sbjct: 133 GTASGYQIYPNEEMLRQIDPFAGV---FTRREIKLLCMLCESKSREEIGAVLALSPSSIK 189

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++SI+ KT     S  I+Y + +  +
Sbjct: 190 GCVSSILNKTGYGNISQLISYMISHGCL 217


>gi|302553857|ref|ZP_07306199.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471475|gb|EFL34568.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 325

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           F+L+ RE E +  I+ G  + +IA    IS  TV N+I  I  K  + +R  A+A
Sbjct: 252 FQLSTREAEIMDLIASGMNNQQIAATCFISEKTVKNHINRIFAKLHSTSRGEAVA 306


>gi|228938954|ref|ZP_04101554.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228971836|ref|ZP_04132457.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228978444|ref|ZP_04138821.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228781461|gb|EEM29662.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228787926|gb|EEM35884.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228820803|gb|EEM66828.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326939456|gb|AEA15352.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 212

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKSNLMESKEEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTELEHRTQIAIY 205


>gi|229083091|ref|ZP_04215495.1| Two-component protein Kinase [Bacillus cereus Rock4-2]
 gi|228700249|gb|EEL52831.1| Two-component protein Kinase [Bacillus cereus Rock4-2]
          Length = 592

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQMALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|126736492|ref|ZP_01752233.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. CCS2]
 gi|126714030|gb|EBA10900.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. CCS2]
          Length = 254

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 26/36 (72%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LT R+ E L W+ +GKT+ +IA++LG++  TV  ++
Sbjct: 186 LTKRQREVLQWVGDGKTTQDIALLLGLTPATVEKHL 221


>gi|145594124|ref|YP_001158421.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303461|gb|ABP54043.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 212

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + R+ A   A R
Sbjct: 150 LTDQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSMLAKLGLERRTQAAVLATR 206


>gi|324006555|gb|EGB75774.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 57-2]
          Length = 223

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214


>gi|302535507|ref|ZP_07287849.1| two-component system response regulator [Streptomyces sp. C]
 gi|302444402|gb|EFL16218.1| two-component system response regulator [Streptomyces sp. C]
          Length = 219

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  R
Sbjct: 157 LTDQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 213


>gi|320010051|gb|ADW04901.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 224

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LTGRE E +  +++G ++ EIA  L +S  TV  ++  I+ K   + R   +  A    
Sbjct: 156 KLTGREREVMMLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215

Query: 245 IV 246
           +V
Sbjct: 216 LV 217


>gi|302528815|ref|ZP_07281157.1| two component transcriptional regulator [Streptomyces sp. AA4]
 gi|302437710|gb|EFL09526.1| two component transcriptional regulator [Streptomyces sp. AA4]
          Length = 201

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE + L+   +G T  +IA  L +S  TV N+++S + KT  +TR+ A+
Sbjct: 141 LTARERDVLSAAKDGSTVADIAKSLFLSDGTVRNHLSSAIGKTGARTRAEAV 192


>gi|229102432|ref|ZP_04233140.1| Response regulator [Bacillus cereus Rock3-28]
 gi|228681079|gb|EEL35248.1| Response regulator [Bacillus cereus Rock3-28]
          Length = 212

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDTSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|194291803|ref|YP_002007710.1| response regulator, luxr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225707|emb|CAQ71653.1| putative Response regulator, LuxR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 220

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L  ++ G+++  IA  +G+S NTV  ++A+I+      +R  AI  A R  +
Sbjct: 156 LTPRQLEVLHQLTLGRSNKVIAYHMGLSENTVRVHVAAILDHLGVVSRVEAILEAQRRGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|251798752|ref|YP_003013483.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546378|gb|ACT03397.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 221

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D ELT RE E L  I+EG+++ EI   L IS  TV  ++++++ K   + R+     A R
Sbjct: 155 DEELTEREKEVLLLIAEGRSNKEIGEELHISVKTVKTHVSNLLMKCELEDRTQLAVLAHR 214

Query: 243 NN 244
             
Sbjct: 215 KG 216


>gi|110642402|ref|YP_670132.1| transcriptional regulator NarP [Escherichia coli 536]
 gi|191170199|ref|ZP_03031753.1| nitrate/nitrite response regulator NarP [Escherichia coli F11]
 gi|215487411|ref|YP_002329842.1| transcriptional regulator NarP [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559110|ref|YP_002392023.1| transcriptional regulator NarP [Escherichia coli S88]
 gi|218690355|ref|YP_002398567.1| transcriptional regulator NarP [Escherichia coli ED1a]
 gi|306814694|ref|ZP_07448856.1| transcriptional regulator NarP [Escherichia coli NC101]
 gi|312967493|ref|ZP_07781708.1| response regulator [Escherichia coli 2362-75]
 gi|331658272|ref|ZP_08359234.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA206]
 gi|110343994|gb|ABG70231.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           536]
 gi|190909715|gb|EDV69300.1| nitrate/nitrite response regulator NarP [Escherichia coli F11]
 gi|215265483|emb|CAS09885.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218365879|emb|CAR03621.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli S88]
 gi|218427919|emb|CAR08839.2| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli ED1a]
 gi|281179284|dbj|BAI55614.1| nitrate/nitrite response regulator [Escherichia coli SE15]
 gi|294492603|gb|ADE91359.1| DNA-binding response regulator, LuxR family [Escherichia coli
           IHE3034]
 gi|305852088|gb|EFM52540.1| transcriptional regulator NarP [Escherichia coli NC101]
 gi|307554259|gb|ADN47034.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           ABU 83972]
 gi|307626269|gb|ADN70573.1| transcriptional regulator NarP [Escherichia coli UM146]
 gi|312287690|gb|EFR15595.1| response regulator [Escherichia coli 2362-75]
 gi|312946814|gb|ADR27641.1| transcriptional regulator NarP [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320196066|gb|EFW70690.1| Nitrate/nitrite response regulator protein [Escherichia coli
           WV_060327]
 gi|323188081|gb|EFZ73376.1| response regulator [Escherichia coli RN587/1]
 gi|323951986|gb|EGB47860.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323955960|gb|EGB51713.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|330912024|gb|EGH40534.1| nitrate/nitrite response regulator protein [Escherichia coli AA86]
 gi|331056520|gb|EGI28529.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA206]
          Length = 215

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|333025294|ref|ZP_08453358.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745146|gb|EGJ75587.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 205

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E +  +++G ++ EIA  L +S  TV  ++  ++ K   + R   +  A    I
Sbjct: 137 LTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETGI 196

Query: 246 V 246
           V
Sbjct: 197 V 197


>gi|302387360|ref|YP_003823182.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
 gi|302197988|gb|ADL05559.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
          Length = 222

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + +  + +G ++ EIA  L +S  TV NY+++I+ K   + R+    +AV+ N
Sbjct: 156 ELTRTEWKIIAQVEKGASNKEIAKNLNLSEGTVRNYLSTILNKLDLRDRTQLAIWAVQTN 215

Query: 245 I 245
           +
Sbjct: 216 V 216


>gi|302530152|ref|ZP_07282494.1| two component transcriptional regulator [Streptomyces sp. AA4]
 gi|302439047|gb|EFL10863.1| two component transcriptional regulator [Streptomyces sp. AA4]
          Length = 197

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+ REV+ L  ++EG  + EIA  L  S  TV N I  +  +   + R  A+AYA
Sbjct: 132 GDRTNLSPREVDVLRLMAEGWDTAEIANKLCYSERTVKNVIYGMTNRLKLRNRPHAVAYA 191

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 192 LRAGVI 197


>gi|228991572|ref|ZP_04151516.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768141|gb|EEM16760.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 201

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +D  LT RE+E L     G T+ EI   L ++  TV NY++S ++K   ++R  AI  A
Sbjct: 137 EDNPLTAREMEILRMAKNGMTTREIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIA 195


>gi|153005603|ref|YP_001379928.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029176|gb|ABS26944.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 215

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +  G T  ++A  LGI+  TV  Y+  I  K    T++ A   AV   +
Sbjct: 153 LSKRELEVLQLLVHGHTYADVAQALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|86136672|ref|ZP_01055251.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
 gi|85827546|gb|EAQ47742.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
          Length = 214

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 147 LTGREQTILLELAQGKSNKDVAHSLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|317489864|ref|ZP_07948357.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325829952|ref|ZP_08163410.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|316911019|gb|EFV32635.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325488119|gb|EGC90556.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 191

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 163 GLLAAY--QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           GL+  Y  +    +S   H  + F+LT RE E L  + +G T  EIA  L +S +TV  +
Sbjct: 106 GLVDRYRTEEGSIESRCAHAARTFDLTRREEEVLALLLKGCTRSEIARELFVSGDTVKTH 165

Query: 221 IASIMRKTA 229
           I ++ RKT 
Sbjct: 166 IRNLYRKTG 174


>gi|311894021|dbj|BAJ26429.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTGRE E L  ++ G T+ EIA  L +S +TV  ++  ++ K   + R  A+  A
Sbjct: 158 LTGREREILLAVARGWTNGEIAARLVLSESTVKTHVGRVLAKIGARDRVQAVILA 212


>gi|311067079|ref|YP_003972002.1| response regulator [Bacillus atrophaeus 1942]
 gi|310867596|gb|ADP31071.1| response regulator [Bacillus atrophaeus 1942]
          Length = 159

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 30/63 (47%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  +S G     IA  L +S  TV NY + +  K     R  AI  A   
Sbjct: 97  YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTVRNYCSKLYSKLDVNNREEAIKMARTE 156

Query: 244 NIV 246
           NIV
Sbjct: 157 NIV 159


>gi|308049915|ref|YP_003913481.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632105|gb|ADN76407.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 216

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F++ D+   K  ELT ++   L   +EG  + +IA  LG+S  T+  +  +I RK   + 
Sbjct: 140 FEANDI-GAKLAELTPQQYRVLQMFAEGMLNKQIAYDLGVSEATIKAHATAIFRKLGVRN 198

Query: 233 RSGAI 237
           R+ A+
Sbjct: 199 RTQAV 203


>gi|239831042|ref|ZP_04679371.1| Monoamine regulon transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239823309|gb|EEQ94877.1| Monoamine regulon transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 241

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE+E +  I  GK++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 176 LTAREIEVVHAIRIGKSNKIIAFELGMSEGTVKAHVHNIMKKIGAANRT 224


>gi|258653570|ref|YP_003202726.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556795|gb|ACV79737.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 221

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LAA     F + D      F +LT RE E L  I+ G+T+ +IA  L +S  TV N +++
Sbjct: 136 LAARVTRAFAAPDNPRAAAFPQLTDREREVLDLIAAGRTNAQIAAELFLSGKTVRNNVST 195

Query: 224 IMRKTATKTRSGAIAYA 240
           I+ K     R+  I  A
Sbjct: 196 ILSKLQAGDRANVIIRA 212


>gi|73541245|ref|YP_295765.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
 gi|72118658|gb|AAZ60921.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
          Length = 395

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K F+LT  E      +++G T DE AV LGIS+NT   ++ +I  KT   TR   +   +
Sbjct: 329 KLFDLTPAETALALVLADGLTLDEAAVELGISKNTARAHLRAIFSKTGV-TRQATLVRTL 387

Query: 242 RNNIV 246
            +++V
Sbjct: 388 LSSVV 392


>gi|16130130|ref|NP_416697.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109009|ref|AP_002789.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           W3110]
 gi|170081813|ref|YP_001731133.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238901367|ref|YP_002927163.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BW2952]
 gi|400374|sp|P31802|NARP_ECOLI RecName: Full=Nitrate/nitrite response regulator protein narP
 gi|304917|gb|AAA24200.1| nitrate/nitrite response regulator [Escherichia coli]
 gi|1788521|gb|AAC75253.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675300|dbj|BAE76656.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K12 substr.
           W3110]
 gi|169889648|gb|ACB03355.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860866|gb|ACR62864.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BW2952]
 gi|260448714|gb|ACX39136.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|315136825|dbj|BAJ43984.1| transcriptional regulator NarP [Escherichia coli DH1]
          Length = 215

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|330987825|gb|EGH85928.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 126

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+ CL  ++ G+T  EIA   G+S  +V   I S M K     R   +A A R  +
Sbjct: 17  LAERELSCLLAVAAGQTDKEIAKHDGLSPRSVKGRIESCMHKLGVYKRPALVAEAFRRGL 76

Query: 246 V 246
           +
Sbjct: 77  I 77


>gi|331001406|ref|ZP_08325026.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
 gi|329568288|gb|EGG50099.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
          Length = 220

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           LTGRE++ +  I++G  + EIA  LGI+  TV  + +SI RK   +T
Sbjct: 140 LTGRELDIVRLITKGLNNKEIAEELGIAEKTVKVHRSSIYRKLQVRT 186


>gi|297159127|gb|ADI08839.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 206

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G +  EIA    +S+ TV NY++S   K   + R 
Sbjct: 135 AADAISAGDSPLTAREAELLELAADGASIAEIAQRAALSQGTVRNYLSSAASKIPAENRH 194

Query: 235 GA 236
            A
Sbjct: 195 AA 196


>gi|298489796|ref|YP_003719973.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298231714|gb|ADI62850.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 218

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE + L  I+ G ++ EIA  L IS  TV N++ +I+ +   + R+ A   A
Sbjct: 154 ELTPREKQVLRLIANGASNREIAHTLYISEGTVKNHVTNILSRLNLRDRTQAAILA 209


>gi|84516508|ref|ZP_01003867.1| two-component response regulator [Loktanella vestfoldensis SKA53]
 gi|84509544|gb|EAQ06002.1| two-component response regulator [Loktanella vestfoldensis SKA53]
          Length = 130

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE+E L  ISEG +  + A  +G+  +TV++Y  ++ RK    ++S A+  A +
Sbjct: 64  DEKLTKREIELLERISEGLSYAKCANEMGLQLSTVHSYSRALFRKLGINSKSQAVLEAQK 123

Query: 243 NNI 245
             I
Sbjct: 124 FGI 126


>gi|119714227|ref|YP_919369.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119526136|gb|ABL79506.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 574

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE E L+ + EG ++ EIA  L IS  T  +++++I+ K   ++R+ A AYA+
Sbjct: 504 LSRREQEVLSLVVEGLSNAEIAERLFISVKTAGHHVSNILTKLGVRSRTEATAYAL 559


>gi|323130577|gb|ADX18007.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 238

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 177 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 227


>gi|257094984|ref|YP_003168625.1| two component LuxR family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047508|gb|ACV36696.1| two component transcriptional regulator, LuxR family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 205

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 25/47 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           LT RE E L  I  GK +  IA  LGIS  TV  + A IM K+   +
Sbjct: 143 LTARETEVLDGIVSGKRNKVIAADLGISERTVETHRARIMEKSGANS 189


>gi|239636020|ref|ZP_04677034.1| transcriptional regulatory protein DegU [Staphylococcus warneri
           L37603]
 gi|239598291|gb|EEQ80774.1| transcriptional regulatory protein DegU [Staphylococcus warneri
           L37603]
          Length = 224

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K++   + YA++  +
Sbjct: 156 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLELKSKPELVEYAMKKKL 215

Query: 246 V 246
           +
Sbjct: 216 L 216


>gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 244

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 183 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFAKTGTASRTELVRYALEHGL 242

Query: 246 V 246
           V
Sbjct: 243 V 243


>gi|159898519|ref|YP_001544766.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus
            ATCC 23779]
 gi|159891558|gb|ABX04638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Herpetosiphon aurantiacus ATCC 23779]
          Length = 1019

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+ RE+  +  ++ G ++ EIA  L ++ NT+  ++ +I  K A  +R+ AIA A R N+
Sbjct: 956  LSERELTVIRLLAAGFSNQEIAQQLVVTLNTIKTHLKNIYSKLAVTSRTQAIARARRLNL 1015

Query: 246  V 246
            +
Sbjct: 1016 I 1016


>gi|188532994|ref|YP_001906791.1| Transcriptional regulatory protein, LuxR [Erwinia tasmaniensis
           Et1/99]
 gi|188028036|emb|CAO95893.1| Transcriptional regulatory protein, LuxR [Erwinia tasmaniensis
           Et1/99]
          Length = 242

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 178 VHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + +GK  +L T RE + + +  +  ++ EIA  L IS NTV NY+ SI  K      +  
Sbjct: 156 ISFGKPTDLFTDREFDVVFFALQSLSAKEIAKKLSISHNTVENYLHSIYDKIGVSALNQL 215

Query: 237 IAYAVRN 243
           I Y  +N
Sbjct: 216 IEYCRKN 222


>gi|121594320|ref|YP_986216.1| LuxR family transcriptional regulator [Acidovorax sp. JS42]
 gi|222110954|ref|YP_002553218.1| LuxR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|120606400|gb|ABM42140.1| transcriptional regulator, LuxR family [Acidovorax sp. JS42]
 gi|221730398|gb|ACM33218.1| transcriptional regulator, LuxR family [Acidovorax ebreus TPSY]
          Length = 181

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 25/48 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELT RE E    + +G TS EI   L IS  TV  Y A +MRK    T
Sbjct: 123 ELTAREREVAARLLDGMTSKEIGRALDISHRTVEIYRARLMRKYGAST 170


>gi|148252117|ref|YP_001236702.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146404290|gb|ABQ32796.1| putative Transcriptional regulatory protein, luxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 206

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 179 HWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H G+ +  LT RE E L  IS G ++ E A+ +GIS  T  ++ A  MRK   +  +  +
Sbjct: 138 HPGRTNKSLTPREREVLELISAGHSNKEGALRMGISPRTFESHRAEAMRKLGARNTAELV 197

Query: 238 AYAVRNNI 245
             A+ N I
Sbjct: 198 RAALLNQI 205


>gi|284029989|ref|YP_003379920.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283809282|gb|ADB31121.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 902

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E    ++EG T+ +IA  L +S  T  N++  I+ K    TRS   A++ R+
Sbjct: 828 LSPREAEVAALVAEGLTNRQIAERLVLSERTAQNHVQHILTKLGFTTRSQIAAWSARS 885


>gi|257062833|ref|YP_003142505.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790486|gb|ACV21156.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 320

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + K   L+ RE E L  I  GK +  IA  + +S NTV  ++ +I++KT  + R   I
Sbjct: 257 YAKRNNLSKRETEVLALIVMGKDNQNIASEMTLSLNTVKVHVHNILKKTGQQNRQALI 314


>gi|229018500|ref|ZP_04175361.1| Two-component protein Kinase [Bacillus cereus AH1273]
 gi|229024758|ref|ZP_04181196.1| Two-component protein Kinase [Bacillus cereus AH1272]
 gi|228736532|gb|EEL87089.1| Two-component protein Kinase [Bacillus cereus AH1272]
 gi|228742774|gb|EEL92913.1| Two-component protein Kinase [Bacillus cereus AH1273]
          Length = 592

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  AI  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAILKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|300777043|ref|ZP_07086901.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
 gi|300502553|gb|EFK33693.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
          Length = 229

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ RE E L  I +   + EIA +L IS  TV  +  S++ KT  K  +G + YA+ + I
Sbjct: 159 ISKREKEVLELICKQYNTAEIADLLFISSRTVEGHRNSLLLKTGAKNTAGLVVYAIESKI 218


>gi|226304567|ref|YP_002764525.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183682|dbj|BAH31786.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 222

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ +IA  L +S  TV N++ + +RK     R     YA+   +
Sbjct: 162 LTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|86742704|ref|YP_483104.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86569566|gb|ABD13375.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 300

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 181 GKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           GK+    L+ RE + L  ++ G T+ E+A  L +SR TV  Y+ S MRK    TR  A+ 
Sbjct: 232 GKNSKVRLSTRETDVLAQVALGCTNAEVANRLSLSRETVKAYLQSAMRKLDAGTRYEAVV 291

Query: 239 YA 240
            A
Sbjct: 292 RA 293


>gi|6094276|sp|P56644|SGAR_HYPME RecName: Full=Probable transcriptional regulatory protein sgaR
          Length = 211

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++ G T+ +IA   GISRNTV  ++ ++  K     R+ A+A  V  N
Sbjct: 148 LTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVALHVSIN 206


>gi|326799555|ref|YP_004317374.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326550319|gb|ADZ78704.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 218

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 158 RLWEIGLLAAYQANM-FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            +W  G    Y  NM F++ +  W    +L  RE+E L          EIA  + +S  T
Sbjct: 120 EIWMKGYYNNYLTNMGFQASNTDW---MDLRDRELEFLRLACSDLNYHEIADCMCLSIKT 176

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ Y A +  K   K+R G +  A+++N++
Sbjct: 177 IDGYRACLFAKFGVKSRVGLVLEALKHNLI 206


>gi|295108610|emb|CBL22563.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus obeum A2-162]
          Length = 206

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 181 GKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G D+   G   RE E +  I++G ++ EIA  L +S  TV NY++SI+ K   + R+
Sbjct: 140 GFDYAAHGINEREKEIIRLIADGNSNKEIAAELYLSEGTVRNYLSSILNKLQLRDRT 196


>gi|284929446|ref|YP_003421968.1| LuxR family two component transcriptional regulator [cyanobacterium
           UCYN-A]
 gi|284809890|gb|ADB95587.1| two component transcriptional regulator, LuxR family
           [cyanobacterium UCYN-A]
          Length = 233

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++
Sbjct: 169 IDLTPREKSVLDLVAEGLMNKEIAARLNTSVRNVEKYVSRLFGKTETNSRTELVRFALKH 228

Query: 244 NI 245
            +
Sbjct: 229 GL 230


>gi|282881294|ref|ZP_06289978.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS
           5C-B1]
 gi|281304839|gb|EFA96915.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS
           5C-B1]
          Length = 221

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I +G  + EIA  L I   TV  +  +IM K   K+ S    YAV +  
Sbjct: 156 LSDREIEVLSLIVQGYINKEIADRLNIGMTTVITHRKNIMEKLGVKSVSALTIYAVTHGY 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|261209952|ref|ZP_05924252.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
 gi|260841017|gb|EEX67549.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
          Length = 214

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G ++ +IA  L IS  TV +++  I +K   K R  AIA+  +N
Sbjct: 154 DLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQN 212


>gi|290958464|ref|YP_003489646.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647990|emb|CBG71096.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 213

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G     T RE E L + +EG  + EIA  L +  +TV NY+++++ K+  + R  AI  A
Sbjct: 148 GSASPFTRREAEILRFAAEGAPAQEIAGRLRLELSTVRNYLSTVVAKSGARNRVDAIRIA 207

Query: 241 V 241
           +
Sbjct: 208 M 208


>gi|229031002|ref|ZP_04187018.1| Response regulator [Bacillus cereus AH1271]
 gi|228730349|gb|EEL81313.1| Response regulator [Bacillus cereus AH1271]
          Length = 566

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R  AI  A   
Sbjct: 504 YGLTKREMEVLEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNREEAIKMARTE 563

Query: 244 NIV 246
           NI+
Sbjct: 564 NIL 566


>gi|183983931|ref|YP_001852222.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
 gi|183177257|gb|ACC42367.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
          Length = 218

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L ++++G ++ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 157 LTERETEILRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216


>gi|87201101|ref|YP_498358.1| LuxR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136782|gb|ABD27524.1| transcriptional regulator, LuxR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 416

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 11/78 (14%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +ILRD    +GL +     +F            L+  E      +++G +++E A+ LG+
Sbjct: 320 VILRDPARRLGLASPDLEQLFG-----------LSPAEARLAQLLADGLSTEEAALQLGV 368

Query: 213 SRNTVNNYIASIMRKTAT 230
           SRNTV + + ++  KT T
Sbjct: 369 SRNTVRSQLQAVFAKTGT 386


>gi|405947|gb|AAA16411.1| narP [Escherichia coli]
          Length = 225

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214


>gi|37523973|ref|NP_927350.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214979|dbj|BAC92345.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 229

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I EG+++ +IA  L I+  TV  ++ +I+ K     R+ A   A+R  +
Sbjct: 168 LTERELEVLQLIVEGRSNQDIADQLYITVGTVKTHVRNILSKLCADDRTQAAVTALRAGL 227

Query: 246 V 246
           V
Sbjct: 228 V 228


>gi|262164568|ref|ZP_06032306.1| transcriptional regulator LuxR family [Vibrio mimicus VM223]
 gi|262026948|gb|EEY45615.1| transcriptional regulator LuxR family [Vibrio mimicus VM223]
          Length = 310

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D +LT RE E L  +  GK    IA ++GIS  TV  Y A +  K    ++   I  A
Sbjct: 224 GADLKLTARESEVLFLLLYGKKPQHIARVMGISIKTVEGYEAKLRSKFGALSKDQLIDLA 283

Query: 241 V 241
           +
Sbjct: 284 L 284


>gi|229185568|ref|ZP_04312748.1| Response regulator [Bacillus cereus BGSC 6E1]
 gi|228597963|gb|EEK55603.1| Response regulator [Bacillus cereus BGSC 6E1]
          Length = 566

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R  AI  A   
Sbjct: 504 YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTE 563

Query: 244 NIV 246
           NI+
Sbjct: 564 NIL 566


>gi|284032205|ref|YP_003382136.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811498|gb|ADB33337.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 221

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 174 KSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +S   H  K+ + LT RE E +  + EG ++DEIA  L +S  T   +++  M K   + 
Sbjct: 142 RSRQPHASKELDVLTEREREIVALVGEGLSNDEIAARLVLSPATAKTHVSRAMVKLGVRD 201

Query: 233 RSGAIAYAVRNNIV 246
           R+  +  A +  +V
Sbjct: 202 RAQLVVVAYQTGLV 215


>gi|218289507|ref|ZP_03493735.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240375|gb|EED07557.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 210

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +++G ++ EIA  L IS  TV  ++  I  K   + R+ A   A+R+ 
Sbjct: 149 QLTPRESQILRQVTKGLSNKEIADRLQISERTVKAHLQHIFDKLGVQDRTSAAVLAIRHG 208


>gi|182437656|ref|YP_001825375.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778292|ref|ZP_08237557.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466172|dbj|BAG20692.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658625|gb|EGE43471.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 206

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S   K   + R 
Sbjct: 135 AADAISAGDSPLTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAATKIGAENRH 194

Query: 235 GAIAYA 240
            A+  A
Sbjct: 195 TAVRLA 200


>gi|182412651|ref|YP_001817717.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839865|gb|ACB74117.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 219

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R  E +  I+EG+++ EIA +L +S  T+  +   +M +      +G + YA+R  +
Sbjct: 155 LTPRMREIVQLIAEGRSTKEIAFLLNLSVKTIETHRMHLMARLGLHDVAGVVRYALRTGL 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|154496530|ref|ZP_02035226.1| hypothetical protein BACCAP_00822 [Bacteroides capillosus ATCC
           29799]
 gi|150274163|gb|EDN01254.1| hypothetical protein BACCAP_00822 [Bacteroides capillosus ATCC
           29799]
          Length = 817

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 139 RIRIGLMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           R  + ++ L P      G+ I + +  EI    A ++ +F   + +  +  +LT RE E 
Sbjct: 710 RKYLSILFLLPSMKKKHGKAIQKIKALEIHYTKAEESRIFFMLEKYPEQMGQLTEREREV 769

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              ++ G  + EIA  L IS  TV ++I SI  KT    RS
Sbjct: 770 AQLVAAGLRNREIAEKLFISEETVKSHIRSIFNKTNIDRRS 810


>gi|91794445|ref|YP_564096.1| regulatory protein, LuxR [Shewanella denitrificans OS217]
 gi|91716447|gb|ABE56373.1| transcriptional regulator, LuxR family [Shewanella denitrificans
           OS217]
          Length = 222

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   +  +S G  + EIA  L IS +TV  +++S+ RKT ++ R
Sbjct: 157 LTNRERTIIQLVSSGARNKEIAHRLCISEHTVKAHLSSVFRKTQSRNR 204


>gi|94309404|ref|YP_582614.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93353256|gb|ABF07345.1| putative two component transcriptional regulator, LuxR family
           [Cupriavidus metallidurans CH34]
          Length = 207

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 30/42 (71%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE+  + +++ G ++  I+V+LGIS  TV+++ ASIM K
Sbjct: 146 LSRRELTVMRFLAAGHSNKAISVVLGISNKTVSSHKASIMTK 187


>gi|301328679|ref|ZP_07221739.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 78-1]
 gi|300844929|gb|EFK72689.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 78-1]
          Length = 216

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214


>gi|288917724|ref|ZP_06412087.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350939|gb|EFC85153.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 250

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT REVE L  +++G ++ + A  LG+S  TV N++ +++ K   + R     +A+R  
Sbjct: 187 LTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLAKLQLRNRVELTRFALREG 245


>gi|255525021|ref|ZP_05391967.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296187376|ref|ZP_06855771.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511277|gb|EET87571.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296047898|gb|EFG87337.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 220

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE++    ++EGK++ +I  +L +S  TV NY+  I  K    +R+
Sbjct: 160 LTKREMDVAKLVAEGKSNKDICKVLFLSEGTVKNYVTKIFEKLQLNSRT 208


>gi|239942603|ref|ZP_04694540.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989062|ref|ZP_04709726.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446065|ref|ZP_06585455.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349012|gb|EFE75916.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 219

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E + L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  R
Sbjct: 157 LTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 213


>gi|257054193|ref|YP_003132025.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256584065|gb|ACU95198.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 214

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +L+ RE   L  I +G ++ EIA  L ++  TV NY+ S++ K   + R+ A A+  R+
Sbjct: 151 KLSERERSVLELIGQGLSNREIAERLFLAEKTVKNYVTSLLSKLGMRRRTQAAAWVARH 209


>gi|256827483|ref|YP_003151442.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583626|gb|ACU94760.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 215

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E +  ++EG  + E+A  L +S  TV N+I++I+ K   K R+
Sbjct: 154 LTDREYEVVEAVAEGLDNAEVAQTLYMSEGTVRNHISTILAKLGLKNRT 202


>gi|229046883|ref|ZP_04192515.1| Two-component protein Kinase [Bacillus cereus AH676]
 gi|228724428|gb|EEL75753.1| Two-component protein Kinase [Bacillus cereus AH676]
          Length = 592

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|255036046|ref|YP_003086667.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254948802|gb|ACT93502.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 214

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + LT REV+ LT ++   ++ EIA  L +S  TV  Y  SI+RK A K  +  + +A
Sbjct: 152 YNLTKREVDILTEVAREFSTAEIADKLCLSEYTVETYRKSIIRKLAAKNIASLVNFA 208


>gi|163755392|ref|ZP_02162512.1| putative transcriptional regulator [Kordia algicida OT-1]
 gi|161324812|gb|EDP96141.1| putative transcriptional regulator [Kordia algicida OT-1]
          Length = 252

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 176 YDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           YD+  G     +  +LT RE E L + + G T +EIA  + +S +TV  +   +  K   
Sbjct: 177 YDLEGGFWKTQEKIKLTSREKEILQYSTRGYTINEIAKTIFVSPDTVKFHRRKLFDKLEV 236

Query: 231 KTRSGAIAYAVRNNIV 246
              S AIAYA  N ++
Sbjct: 237 ANISEAIAYATNNKLI 252


>gi|297579999|ref|ZP_06941926.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535645|gb|EFH74479.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|327485927|gb|AEA80333.1| Transcriptional regulator VpsT [Vibrio cholerae LMA3894-4]
          Length = 224

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NN
Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216

Query: 245 I 245
           I
Sbjct: 217 I 217


>gi|94969929|ref|YP_591977.1| LuxR family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551979|gb|ABF41903.1| transcriptional regulator, LuxR family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 153

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ++  +T RE+E LT ++ G ++ EIA  L +S NTV  + A    K     R+ A+
Sbjct: 88  QELGITAREMEILTLVAHGLSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAV 143


>gi|30021317|ref|NP_832948.1| two-component protein kinase [Bacillus cereus ATCC 14579]
 gi|218232352|ref|YP_002367934.1| Two-component protein Kinase [Bacillus cereus B4264]
 gi|29896871|gb|AAP10149.1| Two-component protein Kinase [Bacillus cereus ATCC 14579]
 gi|218160309|gb|ACK60301.1| Two-component protein Kinase [Bacillus cereus B4264]
          Length = 595

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 532 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 591

Query: 244 NIV 246
            I+
Sbjct: 592 GII 594


>gi|163940925|ref|YP_001645809.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863122|gb|ABY44181.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 595

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 532 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 591

Query: 244 NIV 246
            I+
Sbjct: 592 GII 594


>gi|315647520|ref|ZP_07900622.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315276959|gb|EFU40300.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 216

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI--- 237
            + + LT RE++    ++E K + EIA +L I+  TV NYI+ I  K     R+ AI   
Sbjct: 149 AQHYNLTPRELQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRTKAIPLL 208

Query: 238 AYAVRN 243
            +A+R+
Sbjct: 209 KHALRD 214


>gi|307329449|ref|ZP_07608610.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306884858|gb|EFN15883.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 191

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  R
Sbjct: 126 LTEQERRILLLIGEGLTNRAIGERLHLAEKTIKNYVSSLLAKLGMERRSQAAAYVAR 182


>gi|284991855|ref|YP_003410409.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065100|gb|ADB76038.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 248

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G    LT RE E L  ++ G ++ +IA  L IS +TV N++A++  K    ++   ++ 
Sbjct: 179 GGGGAVLTEREREILDLLARGLSNADIAQQLTISVHTVRNHVANLSAKLGAHSKLEVLSI 238

Query: 240 AVRNNIV 246
           AVR+ +V
Sbjct: 239 AVRDGLV 245


>gi|239918649|ref|YP_002958207.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415136|ref|ZP_06246878.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839856|gb|ACS31653.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 222

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E +T +++G ++ EIA  L ++  TV +++  IM K   + R   +  A R  
Sbjct: 157 ELTPRELEVVTELAKGSSNAEIAQALFLAEATVKSHLGKIMDKWQARDRVQVLIRASRAG 216

Query: 245 IV 246
           +V
Sbjct: 217 LV 218


>gi|226310595|ref|YP_002770489.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093543|dbj|BAH41985.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 209

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE+E L  I +GK++ EIA  L I   TV  ++++I+ K   + R+ A  Y
Sbjct: 148 QLTPRELEVLKLIGQGKSNQEIADELIIGIKTVKTHVSNILAKLNVEDRTQAAIY 202


>gi|153007612|ref|YP_001368827.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559500|gb|ABS12998.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 241

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE+E +  I  GK++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 176 LTAREIEVVHAIRIGKSNKIIAFELGMSEGTVKAHVHNIMKKIGAANRT 224


>gi|91783961|ref|YP_559167.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91687915|gb|ABE31115.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 216

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVLKRIAAGQTITEIAAELCVSSKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|154243760|ref|YP_001409333.1| autoinducer-binding domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162882|gb|ABS70097.1| Autoinducer-binding domain protein [Xanthobacter autotrophicus Py2]
          Length = 233

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L  ++  CL W +EGKT  +IA I G+S  TVN ++ +  +     + + A A A +
Sbjct: 170 EIDLKAKQALCLKWSAEGKTMKDIASIEGMSFATVNFHLNNARKALDAGSLAQATALATK 229

Query: 243 NNIV 246
             ++
Sbjct: 230 LKLI 233


>gi|323176891|gb|EFZ62481.1| response regulator [Escherichia coli 1180]
          Length = 204

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 143 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 193


>gi|300788286|ref|YP_003768577.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299797800|gb|ADJ48175.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 195

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           KD   T RE E +  ++EG ++ EIA  + +++ TV  +++ ++ K   + R+ A+A A
Sbjct: 121 KDDPFTPREREVVECLAEGMSNTEIAARMSMAQRTVKYHVSHVLAKLGARDRAHAVALA 179


>gi|282864856|ref|ZP_06273910.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282560281|gb|EFB65829.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 282

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 155 LRDRLWEI-GLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGI 212
           LRD L  + G LA+   +   +     G  F  L  REV+ L  ++ G T+   A  LG+
Sbjct: 193 LRDELLSVCGRLASAAGSERPA-----GAGFVRLAPREVDVLACVASGATNAVAAERLGL 247

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              TV  Y+ S MRK    TR  A+  A R  ++
Sbjct: 248 RPETVKAYLRSSMRKLGAHTRLEAVVAARRAGLL 281


>gi|300779699|ref|ZP_07089555.1| LuxR family DNA-binding response regulator [Corynebacterium
           genitalium ATCC 33030]
 gi|300533809|gb|EFK54868.1| LuxR family DNA-binding response regulator [Corynebacterium
           genitalium ATCC 33030]
          Length = 198

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+GRE+E L  +  G ++ EIA  L IS+ TV  ++  I  K     R+ A+  A  
Sbjct: 135 DEALSGREIELLKALQTGMSNREIAEALFISQATVKTHLIHIYAKLGVDNRTAAVDKARE 194

Query: 243 NNIV 246
             I+
Sbjct: 195 RRII 198


>gi|229110649|ref|ZP_04240214.1| Two-component protein Kinase [Bacillus cereus Rock1-15]
 gi|229128492|ref|ZP_04257471.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4]
 gi|228654995|gb|EEL10854.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4]
 gi|228672822|gb|EEL28101.1| Two-component protein Kinase [Bacillus cereus Rock1-15]
          Length = 592

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|261418694|ref|YP_003252376.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765509|ref|YP_004131010.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375151|gb|ACX77894.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317110375|gb|ADU92867.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 550

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 165 LAAYQANMFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRN 215
           LAA  A M  S   H G D          +LT RE++ L  + +G ++ EI+  L IS +
Sbjct: 457 LAAIGAMMI-SGKSHGGNDGTVNIDMLSEQLTAREMDVLELLIQGCSNREISERLFISVH 515

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           TV N+I +I +K     RS  IA   + N
Sbjct: 516 TVKNHITNIFQKIGVNDRSQLIALVYQLN 544


>gi|120609353|ref|YP_969031.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120587817|gb|ABM31257.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 256

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+ RE + L  I+ G ++ EIA  L I+  TV  ++  I+RK    +R  A  YA
Sbjct: 191 GSASPLSAREEDVLREIARGASNKEIARALDIAETTVKIHVQHILRKLGLSSRVQAAVYA 250


>gi|110634656|ref|YP_674864.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285640|gb|ABG63699.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 265

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  L+ R+ E + W SEG T+DEIA  L +S +T + ++ ++  +        A+A A+
Sbjct: 200 SNVHLSRRQREVVAWASEGLTADEIAERLNVSVHTADMHLRAVRTRLGVANTVHAVAEAL 259

Query: 242 RNNIV 246
           R  ++
Sbjct: 260 RLGLI 264


>gi|49481089|ref|YP_035969.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228914414|ref|ZP_04078027.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|49332645|gb|AAT63291.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228845231|gb|EEM90269.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 212

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDSSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|326940929|gb|AEA16825.1| two-component protein kinase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 595

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 532 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 591

Query: 244 NIV 246
            I+
Sbjct: 592 GII 594


>gi|325677216|ref|ZP_08156882.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325551913|gb|EGD21609.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 283

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEGKTSDEIAVILGI 212
           DRL +  L A  +A   K   +  G     +  L+ RE E L  ++ G  + EIA  LG+
Sbjct: 189 DRLDDASLTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAERLGL 248

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +T+ +Y+ +IM K    +R  A+  A R  ++
Sbjct: 249 RLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282


>gi|284045613|ref|YP_003395953.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949834|gb|ADB52578.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 208

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E LT I+ G T+ EIA  L +S +TV  + +++ RK   + R+ A+  A R
Sbjct: 147 LSEREQEVLTLIAGGSTNREIAEELYLSPHTVKEHTSALYRKLKARNRAEAVQRAQR 203


>gi|254786770|ref|YP_003074199.1| positive regulator AgmR [Teredinibacter turnerae T7901]
 gi|237687202|gb|ACR14466.1| positive regulator AgmR [Teredinibacter turnerae T7901]
          Length = 212

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT ++   L +++EG ++ EIA+ LG+S +T   Y++ ++ +     R+ A+  A R 
Sbjct: 142 IDLTTQQRATLRYLAEGLSNKEIAIQLGVSPSTAKEYVSKVIERLDATNRTQAVLAAQRE 201

Query: 244 NIV 246
            ++
Sbjct: 202 GLL 204


>gi|332207531|ref|XP_003252850.1| PREDICTED: hypothetical protein LOC100581292 [Nomascus leucogenys]
          Length = 115

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           +E FCP+   LP+   PP G D   CSL F   R+ +
Sbjct: 55  SEAFCPLAAALPKTTGPPGGRDKPTCSLVFRERRVPV 91


>gi|330809042|ref|YP_004353504.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377150|gb|AEA68500.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 223

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           KG I+L   L  + LLA    ++ + +YD        LT RE + L  I  G ++ +I  
Sbjct: 122 KGAIVLDSTL--VALLADQDESVSRPAYDPDLPDTGNLTEREGQTLALIGAGMSNKQIGR 179

Query: 209 ILGISRNTVNNYIASIMRKTATKTR 233
            LGIS  TV  Y+ ++++K +  +R
Sbjct: 180 ELGISDGTVKIYVRNLLQKFSLHSR 204


>gi|326330414|ref|ZP_08196722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951689|gb|EGD43721.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 382

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ELT RE E L  +  G  +  IA  L I+ +TV +++  I+RK     R+ AIA A 
Sbjct: 321 ELTARESEVLQLMVAGAPNRVIAERLVIAEDTVKSHVKQILRKLGVANRAQAIARAA 377


>gi|312959972|ref|ZP_07774486.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311285756|gb|EFQ64323.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 89

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+E L W SEGKT  EI+ I   S+ TV  ++ +I  K     R  A+  AVR  +
Sbjct: 29  LTPSELEILRWASEGKTVWEISQIRATSQATVKFHLRNIYGKLDVSNRVQAMNEAVRQGL 88


>gi|296387778|ref|ZP_06877253.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
          Length = 229

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 170 ANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A++ +  +   GK      +LT REVE L     G    EIA+ L  S+ T++   +S M
Sbjct: 149 AHLLEVGEAEHGKPLASLEQLTPREVEVLRLYGSGLAVGEIAIRLCRSKQTISAQKSSAM 208

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RK    + +G   Y   N +
Sbjct: 209 RKLGLDSNAGLFIYIRENGL 228


>gi|270264592|ref|ZP_06192857.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041275|gb|EFA14374.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 210

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A
Sbjct: 149 ELTERELDVLQEVARGMSNKQVAAQLHISEETVKVHIRNMLRKLDVRSRVAA 200


>gi|302381790|ref|YP_003817613.1| LuxR family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192418|gb|ADK99989.1| two component transcriptional regulator, LuxR family [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 208

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  ++ G T+ EIA  LGI   TV  ++  ++ K     R+ A  +A R
Sbjct: 149 LTPREREVLESVARGLTNKEIARDLGIGPGTVKAHVEKLIAKLGVADRTQAAVFAAR 205


>gi|300024660|ref|YP_003757271.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526481|gb|ADJ24950.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 207

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++ G T+ +IA   GISRNTV  ++ ++  K     R+ A+A  V  N
Sbjct: 144 LTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVALHVSVN 202


>gi|229505909|ref|ZP_04395418.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286]
 gi|229510237|ref|ZP_04399717.1| transcriptional regulator VpsT [Vibrio cholerae B33]
 gi|229514364|ref|ZP_04403825.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21]
 gi|229517633|ref|ZP_04407078.1| transcriptional regulator VpsT [Vibrio cholerae RC9]
 gi|229522476|ref|ZP_04411892.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80]
 gi|229526498|ref|ZP_04415902.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426]
 gi|229528149|ref|ZP_04417540.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)]
 gi|229605441|ref|YP_002876145.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236]
 gi|229334511|gb|EEN99996.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)]
 gi|229336656|gb|EEO01674.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426]
 gi|229340461|gb|EEO05467.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80]
 gi|229345669|gb|EEO10642.1| transcriptional regulator VpsT [Vibrio cholerae RC9]
 gi|229348344|gb|EEO13302.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21]
 gi|229352682|gb|EEO17622.1| transcriptional regulator VpsT [Vibrio cholerae B33]
 gi|229356260|gb|EEO21178.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286]
 gi|229371927|gb|ACQ62349.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236]
          Length = 214

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NN
Sbjct: 148 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 206

Query: 245 I 245
           I
Sbjct: 207 I 207


>gi|229145796|ref|ZP_04274176.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|296503725|ref|YP_003665425.1| two-component protein kinase [Bacillus thuringiensis BMB171]
 gi|228637627|gb|EEK94077.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|296324777|gb|ADH07705.1| two-component protein kinase [Bacillus thuringiensis BMB171]
          Length = 592

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|227506297|ref|ZP_03936346.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197109|gb|EEI77157.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 205

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE+E L  ++ GK++ E+A  L IS  TV  ++  I +K    TR+ A+  A  
Sbjct: 142 EVALSSRELEILEALATGKSNKELAQRLFISEATVKTHLIHIYQKLGVDTRTAAVTVARE 201

Query: 243 NNIV 246
             ++
Sbjct: 202 RKLI 205


>gi|21240910|ref|NP_640492.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106187|gb|AAM35028.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 210

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 32/53 (60%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           REV  L  ++ G ++ EIA  L ++  TV NY+++I+ K   + R+ A+  A+
Sbjct: 153 REVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGIRDRTRAVLKAI 205


>gi|332669606|ref|YP_004452614.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338644|gb|AEE45227.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 224

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++EG ++ EIA  L +S  TV  ++  I+ K   + R  A+  A    +
Sbjct: 160 LTPREVEVLREVAEGLSNGEIADRLFLSEATVKTHVGRILAKLRVRDRVQAVVVAYETGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|313499425|gb|ADR60791.1| Putative metal dependent phosphohydrolase [Pseudomonas putida
           BIRD-1]
          Length = 479

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           K   LT RE   L  IS G ++ E+A  L IS +TV  ++ SI RK    TR+ A
Sbjct: 414 KSTLLTTRECSILMEISRGASNKEVARRLEISPSTVRTHMESIFRKLGCSTRAAA 468


>gi|291575300|gb|ADE10225.1| LigR1 [Actinoplanes liguriensis]
          Length = 217

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYA 240
           +L+ RE   L  I +G T+ EIA  L IS +TV  Y++ I+RK   A + ++  +AYA
Sbjct: 151 QLSDREQAVLGLIGQGLTNAEIAGRLFISDSTVKEYVSVILRKLGVANRVQAAVLAYA 208


>gi|294635449|ref|ZP_06713937.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda
           ATCC 23685]
 gi|291091182|gb|EFE23743.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda
           ATCC 23685]
          Length = 202

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA----NMFKSYDVHW 180
           G+D R   LT   AR  +  ++       +L+D   E  L   +QA    N+F    +++
Sbjct: 69  GVDARIIILTVSDARSDVYALVDAGADGYLLKDSEPETLLAQIHQAAEGHNVFSEAVLNY 128

Query: 181 -GKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            G   E       LT RE++ L  ++ G ++ +IA  L IS  TV  +I +++RK   ++
Sbjct: 129 LGTRSEIADPLADLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIRNLLRKLNVRS 188

Query: 233 RSGA 236
           R  A
Sbjct: 189 RVAA 192


>gi|288919194|ref|ZP_06413532.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349441|gb|EFC83680.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 215

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LTGRE E +  +  G ++DEIA  L IS  T   +++ +M K A + R+
Sbjct: 154 LTGREREVMGLVGMGLSNDEIAAHLVISPATARTHVSRVMIKLAARDRA 202


>gi|271966006|ref|YP_003340202.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509181|gb|ACZ87459.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 201

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   + G    EIA  +G+S  TV NY+AS + K   + R  AI  A
Sbjct: 141 LTERESEVLRLTASGAEPPEIAARIGLSYGTVRNYLASSVTKLNARNRVDAIRIA 195


>gi|262403032|ref|ZP_06079592.1| transcriptional regulator VpsT [Vibrio sp. RC586]
 gi|262350531|gb|EEY99664.1| transcriptional regulator VpsT [Vibrio sp. RC586]
          Length = 224

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           IL+D +W    LA      ++S +  V      +LT RE + +  +  G ++ EIA  L 
Sbjct: 125 ILQDEMWLARKLAQEYILHYRSGNSVVTSQMYAKLTKREQQIIKLLGSGSSNIEIADKLF 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217


>gi|257792657|ref|YP_003183263.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257476554|gb|ACV56874.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 462

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           + LT RE E L  +  GK++  +A  L +S+NTV ++IA + +K    TR
Sbjct: 403 YGLTAREEEVLGQLLHGKSASAVAADLFLSKNTVRSHIAHLYQKMDVHTR 452


>gi|257792428|ref|YP_003183034.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257476325|gb|ACV56645.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 535

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + LT RE E L  ++EG++S  IA  L +S NTV +Y+ +I +K    ++   I +
Sbjct: 476 YGLTNREAEVLMLLAEGRSSSYIAGELVLSDNTVRSYVKNIYQKLDVHSKQDVIDF 531


>gi|239813946|ref|YP_002942856.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239800523|gb|ACS17590.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 247

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E LT I+ G +  EIA + G+S +TV  +I ++  K A  ++S A+  A R
Sbjct: 183 LSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVFEATR 239


>gi|210050464|dbj|BAG80716.1| transcriptional regulator [Rhodococcus sp. YK2]
 gi|210050474|dbj|BAG80725.1| transcriptional regulator [Terrabacter sp. YK3]
          Length = 402

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 37/70 (52%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q + +    V +     L+ RE E L  ++ G+T+  IA  L ++  TV +++  I+RK 
Sbjct: 329 QLDTYPRQAVRFAPASSLSTRESEVLRLMAAGETNSAIAARLFVTDETVKSHVKQILRKL 388

Query: 229 ATKTRSGAIA 238
             + R+ A+A
Sbjct: 389 HARNRAEAVA 398


>gi|91784434|ref|YP_559640.1| LuxR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91688388|gb|ABE31588.1| transcriptional regulator, LuxR family [Burkholderia xenovorans
           LB400]
          Length = 181

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 27/47 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            ELT RE E    +  GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 122 IELTPREREIAAQLVTGKTSKQIGRVLDISPRTVDVYRARLMRKYDT 168


>gi|85859003|ref|YP_461205.1| sensory domain-containing/LuxR family regulatory protein
           [Syntrophus aciditrophicus SB]
 gi|85722094|gb|ABC77037.1| sensory domain linked to a LuxR family regulatory protein
           [Syntrophus aciditrophicus SB]
          Length = 939

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT +E++  + + EGKTS EIA +L   +  ++ +  +I +K     + G++A  +R+
Sbjct: 880 LTKKEIQVASLVREGKTSKEIAELLNSKKRVIDFHRENIRKKLGLNNKKGSLAILLRS 937


>gi|329897100|ref|ZP_08271846.1| regulatory protein, LuxR [gamma proteobacterium IMCC3088]
 gi|328921442|gb|EGG28830.1| regulatory protein, LuxR [gamma proteobacterium IMCC3088]
          Length = 341

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 33/59 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F LT +E   +  ++ G T ++ ++  G+S+NT  +++ S  RK     +S  +++ +R
Sbjct: 278 FSLTKQEARLVIALANGGTLEDFSLETGVSKNTARSHLYSSFRKVGVTQQSALVSHVIR 336


>gi|302521642|ref|ZP_07273984.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302430537|gb|EFL02353.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 249

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           WG    L+ RE E +  I+ G  + +IA    I+  TV N+I  I  K  T TRS AIA
Sbjct: 178 WGG--PLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAKLQTTTRSEAIA 234


>gi|294506039|ref|YP_003570097.1| RNA polymerase sigma factor [Salinibacter ruber M8]
 gi|294342367|emb|CBH23145.1| RNA polymerase sigma factor [Salinibacter ruber M8]
          Length = 194

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMR 226
           QA+  +  D  W    ELTGR+ E L     EG + +E A ++GIS  TVNN+I   ++
Sbjct: 117 QADADQLEDRLWQWIGELTGRQREALVLTRFEGLSHEEAADVMGISPRTVNNHIVRALK 175


>gi|284046997|ref|YP_003397337.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951218|gb|ADB53962.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 223

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           LAA+    F +       D   +LT RE E L  ++ G     IA  LGIS  TV  ++ 
Sbjct: 133 LAAFVLQAFSAPAEEQADDELDQLTPREREVLHHLARGYAYKRIAARLGISPRTVETHVG 192

Query: 223 SIMRKTATKTR 233
           S++RK    +R
Sbjct: 193 SVLRKLQLSSR 203


>gi|238759424|ref|ZP_04620588.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
 gi|238702321|gb|EEP94874.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
          Length = 202

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 12/131 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180
           G+D R   LT   AR  +  ++       +L+D   EI L     AA   N+F +    +
Sbjct: 69  GIDARIIVLTVSDARSDVYAVIDAGADGYLLKDSEPEILLENIRQAAAGENVFSNEVAQY 128

Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 129 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 188

Query: 233 RSGAIAYAVRN 243
           R  A    + N
Sbjct: 189 RVAATIMYIEN 199


>gi|205353364|ref|YP_002227165.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205273145|emb|CAR38106.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628455|gb|EGE34798.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 207

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 146 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 196


>gi|159028166|emb|CAO89773.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 38/62 (61%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT  E++ +  +++G  + EIA  L +S+ T+ +++++++ KT    R+    +A+ 
Sbjct: 160 NVELTPTELKVVQLVAQGLANREIAAKLNVSQRTIESHVSNMLHKTGLHNRTELSQWAIE 219

Query: 243 NN 244
           +N
Sbjct: 220 SN 221


>gi|154687453|ref|YP_001422614.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154353304|gb|ABS75383.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 215

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H   + + T RE+  ++ I++G ++ EI+  L IS  T  NYI+SI+ KT  + R+   
Sbjct: 144 AHQIDESQFTERELSIMSLIAKGFSNREISKQLFISEGTTANYISSILGKTGLEHRTQIA 203

Query: 238 AYAVRNNI 245
            Y +   +
Sbjct: 204 IYYITGKV 211


>gi|254284578|ref|ZP_04959545.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|150425363|gb|EDN17139.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
          Length = 224

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NN
Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216

Query: 245 I 245
           I
Sbjct: 217 I 217


>gi|114561805|ref|YP_749318.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114333098|gb|ABI70480.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 209

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE++ L  ++EGK++  IA  L IS  TV  ++ +++RK   K+R+
Sbjct: 152 LTPRELQILQELAEGKSNRMIAEDLHISEGTVKVHVKNLLRKANAKSRT 200


>gi|53804396|ref|YP_113723.1| LuxR family transcriptional regulator [Methylococcus capsulatus
           str. Bath]
 gi|53758157|gb|AAU92448.1| transcriptional regulator, LuxR family [Methylococcus capsulatus
           str. Bath]
          Length = 255

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT  E   L+ +  G +  EIA  LG++ NTV+ Y   I RK   K R+G +A
Sbjct: 198 LTPAERRLLSALLGGASEAEIAERLGLTPNTVHTYATRIYRKFGVKGRTGLVA 250


>gi|302339955|ref|YP_003805161.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637140|gb|ADK82567.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM
           11293]
          Length = 379

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE++    I +G TS EIA I+ +S  TV NY  SI +K
Sbjct: 315 LTSRELQIAGLIRDGYTSKEIASIMHMSSRTVENYRQSIRKK 356


>gi|299536275|ref|ZP_07049588.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis
           ZC1]
 gi|298728261|gb|EFI68823.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis
           ZC1]
          Length = 243

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            E+T RE E L ++ +G  + EIA  L +S NT+  ++ ++ RK     R+  +A  ++
Sbjct: 180 LEMTDREREVLKFVFKGLKNIEIAKQLFVSENTIKKHLQNLYRKFQVTNRTQLLAKCLK 238


>gi|228940289|ref|ZP_04102860.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973205|ref|ZP_04133794.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982224|ref|ZP_04142510.1| Two-component protein Kinase [Bacillus thuringiensis Bt407]
 gi|228777511|gb|EEM25792.1| Two-component protein Kinase [Bacillus thuringiensis Bt407]
 gi|228786401|gb|EEM34391.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819415|gb|EEM65469.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 592

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|284992446|ref|YP_003411000.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065691|gb|ADB76629.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 217

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE++ L  +++G+++ EIA  L ++  TV N++ +++ K   + R+ A
Sbjct: 157 LSDRELDVLRLLADGRSNREIATALFLAEGTVKNHVTNVLGKLGARDRTQA 207


>gi|37223196|gb|AAQ90192.1| LuxR [Vibrio cholerae]
          Length = 214

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISR 214
           +LT RE ECL W  EGKTS +I  ILG S 
Sbjct: 184 DLTKREKECLAWPCEGKTSWDIPKILGCSE 213


>gi|15601705|ref|NP_233336.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121586693|ref|ZP_01676477.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121726414|ref|ZP_01679688.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147672305|ref|YP_001215128.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153212168|ref|ZP_01947963.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153801409|ref|ZP_01955995.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153818303|ref|ZP_01970970.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153821011|ref|ZP_01973678.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153824729|ref|ZP_01977396.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|153827751|ref|ZP_01980418.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|227812518|ref|YP_002812528.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|254224744|ref|ZP_04918360.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|254850118|ref|ZP_05239468.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746307|ref|ZP_05420254.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101]
 gi|262158188|ref|ZP_06029306.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1]
 gi|262169213|ref|ZP_06036906.1| transcriptional regulator VpsT [Vibrio cholerae RC27]
 gi|262191930|ref|ZP_06050097.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93]
 gi|9658390|gb|AAF96848.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549121|gb|EAX59156.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121631162|gb|EAX63537.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124116720|gb|EAY35540.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|124123075|gb|EAY41818.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|125622807|gb|EAZ51125.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|126511116|gb|EAZ73710.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126521385|gb|EAZ78608.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146314688|gb|ABQ19228.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|148876596|gb|EDL74731.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|149741685|gb|EDM55714.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|227011660|gb|ACP07871.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227015599|gb|ACP11808.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|254845823|gb|EET24237.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736061|gb|EET91459.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101]
 gi|262022494|gb|EEY41202.1| transcriptional regulator VpsT [Vibrio cholerae RC27]
 gi|262030066|gb|EEY48712.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1]
 gi|262032164|gb|EEY50735.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93]
          Length = 224

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NN
Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216

Query: 245 I 245
           I
Sbjct: 217 I 217


>gi|315605340|ref|ZP_07880383.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312909|gb|EFU60983.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 232

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  +  G T  +IA  L +S+ TV N+++S M K   +TR+ A + A
Sbjct: 172 LTARETDVLREVEGGGTIADIAHALTLSQGTVRNHVSSAMLKMDARTRAEAASLA 226


>gi|306820840|ref|ZP_07454463.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551112|gb|EFM39080.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 221

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IS G  +  I+  L IS  TV N+++SI++K   + R+    YA++N I+
Sbjct: 166 VMKEISSGLNNKSISKKLNISEKTVKNHVSSILKKLELQDRTQVAIYAIKNKII 219


>gi|296123119|ref|YP_003630897.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296015459|gb|ADG68698.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 284

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGR++E L  ++ G +  EIA ++ +S+ +V+++   IM K     R     +A+R  +
Sbjct: 222 LTGRQLEVLRHLANGASVKEIARLMHLSQKSVDSHKYRIMHKLGIHDRVELARFAIREGL 281


>gi|320009809|gb|ADW04659.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 225

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E + L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  R
Sbjct: 163 LTDQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 219


>gi|209523263|ref|ZP_03271819.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209496414|gb|EDZ96713.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 220

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +LT RE+E L  I +G ++ EIA  L IS  TV N+++SI+     + R+
Sbjct: 152 DLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSSLNLRDRT 201


>gi|118478620|ref|YP_895771.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043062|ref|ZP_03110301.1| response regulator [Bacillus cereus 03BB108]
 gi|118417845|gb|ABK86264.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196026546|gb|EDX65214.1| response regulator [Bacillus cereus 03BB108]
          Length = 597

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R  AI  A   
Sbjct: 535 YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTE 594

Query: 244 NIV 246
           NI+
Sbjct: 595 NIL 597


>gi|307313911|ref|ZP_07593526.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|306899185|gb|EFN29823.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 254

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 163 GLLAAYQA---NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           GL A  QA   ++     + +G+D  LT RE + L  I  G  +  IA  LG+S NTV  
Sbjct: 160 GLAAQKQASSEDIDLERKIDFGQDL-LTMRETQVLDLICVGMQNKIIADRLGLSENTVKV 218

Query: 220 YIASIMRKTATKTRSGAIAYAVRNN 244
           ++ +I +K   + R+ A A   R++
Sbjct: 219 HVRNIYKKMNVRNRTEAAARYFRSD 243


>gi|254694986|ref|ZP_05156814.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 245

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVPNIMKKIGAANRT 228


>gi|229156784|ref|ZP_04284871.1| Two-component protein Kinase [Bacillus cereus ATCC 4342]
 gi|228626704|gb|EEK83444.1| Two-component protein Kinase [Bacillus cereus ATCC 4342]
          Length = 595

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|254392649|ref|ZP_05007824.1| hypothetical protein SSCG_05260 [Streptomyces clavuligerus ATCC
           27064]
 gi|197706311|gb|EDY52123.1| hypothetical protein SSCG_05260 [Streptomyces clavuligerus ATCC
           27064]
          Length = 261

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           RE + L  IS+G T  +IA  LGISR+TV+ Y+  I  K
Sbjct: 187 RESQVLGQISQGLTHGQIATRLGISRHTVDTYVKRIRTK 225


>gi|223936673|ref|ZP_03628583.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894524|gb|EEF60975.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 198

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ GK   EIA  L +S  T++ Y   I+ K   K  +  + YA+++ +
Sbjct: 137 LSDREFQVLRLIASGKIVSEIAKELSLSVKTISTYRTRILEKMGMKNNAELMHYAIQHQL 196

Query: 246 V 246
           V
Sbjct: 197 V 197


>gi|149915179|ref|ZP_01903707.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b]
 gi|149810900|gb|EDM70739.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b]
          Length = 201

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  LT RE++ L  ++EGK + EIA  L I   TV  ++ ++ RK   + R+ A
Sbjct: 138 DVALTPRELDVLKGLTEGKANKEIARELDIQEVTVKLHVKTLSRKLQARNRTHA 191


>gi|187920980|ref|YP_001890012.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187719418|gb|ACD20641.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 216

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVLKRIAAGQTITEIAAELCVSSKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|70734192|ref|YP_257832.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348491|gb|AAY96097.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 256

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVRN 243
           +L+ R+++    + +G+T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A +  N
Sbjct: 187 QLSPRQLDVARLVGKGQTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALALSPSN 246

Query: 244 N 244
           +
Sbjct: 247 S 247


>gi|21229549|ref|NP_635466.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766422|ref|YP_241184.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188989475|ref|YP_001901485.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111017|gb|AAM39390.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571754|gb|AAY47164.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731235|emb|CAP49409.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris]
          Length = 65

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L  ++EG    EIA  LG+S NTV N++A++  K    +R  AI +A
Sbjct: 2   LGLLAEGLADKEIAQQLGVSPNTVRNHVAALYSKIDVHSRGEAIVWA 48


>gi|85702824|ref|ZP_01033928.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
 gi|85671752|gb|EAQ26609.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
          Length = 202

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +  +S D        LT RE + L  + +GK++ EIA  L I   TV  ++ ++ RK   
Sbjct: 127 DFLESGDTEAEGKVHLTPRETDVLVGVLDGKSNKEIARDLDIQEVTVKLHLKTLSRKLGA 186

Query: 231 KTRSGAIAYA 240
           K R+ A   A
Sbjct: 187 KNRTQAAMIA 196


>gi|119386879|ref|YP_917934.1| DeoR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377474|gb|ABL72238.1| transcriptional regulator, DeoR family [Paracoccus denitrificans
           PD1222]
          Length = 310

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 188 GREVECLT---WIS--EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           GR++E      W+S   GKT DEIA I+GISR T    +A  M +   K R
Sbjct: 5   GRKLEQAAKAAWLSYVAGKTQDEIAGIMGISRQTAQRLVAQAMAEGIVKIR 55


>gi|326382104|ref|ZP_08203797.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199530|gb|EGD56711.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 213

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++GK++ E+   L IS +TV  +I +++RK     R+ A+  A +  +
Sbjct: 153 LTDREHEVLKLLADGKSNAEVGRALFISESTVKFHIRNVIRKLGVTKRTDAVYVASKRGL 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|297528772|ref|YP_003670047.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252024|gb|ADI25470.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 550

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 165 LAAYQANMFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRN 215
           LAA  A M  S   H G D          +LT RE++ L  + +G ++ EI+  L IS +
Sbjct: 457 LAAIGAMMI-SGKSHGGNDGTVNIDMLSEQLTAREMDVLELLIQGCSNREISERLFISVH 515

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           TV N+I +I +K     RS  IA   + N
Sbjct: 516 TVKNHITNIFQKIGVNDRSQLIALVYQLN 544


>gi|256393536|ref|YP_003115100.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256359762|gb|ACU73259.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 208

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ REV+ +  +SEG  + EIA  L  S  T+   +  +M +   + R+  +A+A R  
Sbjct: 145 LSSREVDVIRLVSEGMETKEIAAKLCYSERTIKGVLHDVMTRLELRNRAHVVAHAAREG 203


>gi|169829784|ref|YP_001699942.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168994272|gb|ACA41812.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 200

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            + +   KD  L  +E + L  I+EG T+  IA+ L I + T   Y+  +       +R+
Sbjct: 129 KFKLQNAKDIHLNEKEKKILRLIAEGHTNKAIAIELNIPQRTTERYLTQLFSLLNVDSRT 188

Query: 235 GAIAYAVRNNIV 246
            A+  A R N++
Sbjct: 189 EAVNLAERMNLL 200


>gi|218898278|ref|YP_002446689.1| Two-component protein Kinase [Bacillus cereus G9842]
 gi|218542184|gb|ACK94578.1| Two-component protein Kinase [Bacillus cereus G9842]
          Length = 595

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 532 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 591

Query: 244 NIV 246
            I+
Sbjct: 592 GII 594


>gi|149925364|ref|ZP_01913628.1| two-component response regulator [Limnobacter sp. MED105]
 gi|149825481|gb|EDM84689.1| two-component response regulator [Limnobacter sp. MED105]
          Length = 231

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 148 FPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +P+    L++ L E G+L          AN + S     G D  LT ++VE +   +EG 
Sbjct: 121 YPELLRALQNLLIEAGVLDEVPKGVEKAANEYHSNIYAPGSDKPLTWKQVEIMRKTAEGL 180

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ++ E+A  + IS +TV  +I  I  +   K +  A+   +R
Sbjct: 181 SAKEVAREMDISPDTVRGHIKEIFLRLGAKNKGQAVDIFIR 221


>gi|144899494|emb|CAM76358.1| regulatory protein, LuxR [Magnetospirillum gryphiswaldense MSR-1]
          Length = 253

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F L+ RE E L  ++EG    +IA +L +   TV  +I S  RK    T + A+A A+
Sbjct: 189 FPLSPREQEILLRLTEGLRPQQIAFLLSLHEGTVEKHIESARRKLKAATVTQAVATAL 246


>gi|51209895|ref|YP_063559.1| tctD transcriptional regulator [Gracilaria tenuistipitata var.
           liui]
 gi|50657649|gb|AAT79634.1| tctD transcriptional regulator [Gracilaria tenuistipitata var.
           liui]
          Length = 214

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE   L  +S+G T+ EIA  L +S   +  Y++ ++ KT T+ R+
Sbjct: 149 LTSREYSILVLVSKGCTNKEIANTLNLSTRNIEKYVSRLLSKTKTRNRT 197


>gi|222109015|ref|YP_002551281.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
 gi|13405830|gb|AAD31606.2| TraR' [Agrobacterium radiobacter K84]
 gi|221727937|gb|ACM30987.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
          Length = 234

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ GKT +EIA + G+  N+V   +   M++   ++++   A A+R  +
Sbjct: 174 LDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|15805916|ref|NP_294615.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6458612|gb|AAF10469.1|AE001942_1 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 194

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG+S +TV +++A +  K     R+ A++ A
Sbjct: 133 LTPRESEVLPLLARGFSNKEIARDLGVSPDTVKDHLARLYSKLNAGDRTEAVSRA 187


>gi|111024836|ref|YP_707256.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|29647414|dbj|BAC75412.1| response regulator [Rhodococcus sp. RHA1]
 gi|110823815|gb|ABG99098.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 209

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE+E +  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+
Sbjct: 148 LSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRA 196


>gi|296163133|ref|ZP_06845904.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295886635|gb|EFG66482.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 181

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    +  GKTS +I  +L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRVLDISPRTVDVYRARLMRKYDT 168


>gi|291539797|emb|CBL12908.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis XB6B4]
          Length = 215

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE+E L  +S G  + EIA  L IS  TV N++++I +K     R+
Sbjct: 151 LTRRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRT 199


>gi|293397213|ref|ZP_06641487.1| LuxR family two component transcriptional regulator [Serratia
           odorifera DSM 4582]
 gi|291420684|gb|EFE93939.1| LuxR family two component transcriptional regulator [Serratia
           odorifera DSM 4582]
          Length = 201

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 31/46 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +LT +E++ L  +S+G ++ +IA +L IS  TV+ +  +I+RKT  
Sbjct: 141 QLTPKELQVLGLLSKGLSNLQIAAMLNISNKTVSTHKKNILRKTGA 186


>gi|298345706|ref|YP_003718393.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390592|ref|ZP_07372545.1| DNA-binding response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657799|ref|ZP_07910679.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298235767|gb|ADI66899.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326348|gb|EFL93593.1| DNA-binding response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315491596|gb|EFU81207.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 201

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  LT RE+E L    +G    EIA  + +S  TV NY++S + KT   T +GA
Sbjct: 138 DNPLTEREIEVLKIAEKGLKVQEIATQVYLSPGTVRNYLSSAISKTHADTSAGA 191


>gi|149927806|ref|ZP_01916057.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149823428|gb|EDM82659.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 209

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 171 NMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            + +S   H  +D E      L+ RE + +  I+ GK   EIA  L +S  TV+ Y A I
Sbjct: 128 ELAESLASHLTEDSEKPLHATLSDREFQTIRMIAAGKKLSEIADELSLSPKTVSVYRARI 187

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   KT      YA+ N ++
Sbjct: 188 LEKMRMKTNGELTRYALENGLI 209


>gi|254249338|ref|ZP_04942658.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|124875839|gb|EAY65829.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
          Length = 288

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS------IMRKTATKTRSGAIA 238
           LT RE E L W ++GKT+ EI +I GI+  TV  ++ +       M KT   T++  + 
Sbjct: 227 LTLREREVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLG 285


>gi|33867217|ref|NP_898775.1| putative response regulator (IpbT) [Rhodococcus erythropolis]
 gi|33669051|gb|AAP74045.1| putative response regulator (IpbT) [Rhodococcus erythropolis]
          Length = 209

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE+E +  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+
Sbjct: 148 LSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRA 196


>gi|4096799|gb|AAD10462.1| orfx; function unknown; similar to response regulators of
           two-component regulatory systems; Method: conceptual
           translation supplied by author [Staphylococcus carnosus]
          Length = 185

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM+K   K++   + YA++  +
Sbjct: 123 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALKKKL 182

Query: 246 V 246
           +
Sbjct: 183 L 183


>gi|10957401|ref|NP_051615.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460830|gb|AAF12534.1|AE001826_3 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 209

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G  + +IA  LG+S +TV  +I  I+ +     R+ A   A+R  +
Sbjct: 149 LTPRELDILRLIADGLPNKDIAEALGVSVSTVKLHIQDILHRLQAADRTQAAVKALRAGL 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|318061580|ref|ZP_07980301.1| two component system response regulator [Streptomyces sp. SA3_actG]
 gi|318080493|ref|ZP_07987825.1| two component system response regulator [Streptomyces sp. SA3_actF]
          Length = 167

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E +  +++G ++ EIA  L +S  TV  ++  ++ K   + R   +  A    I
Sbjct: 99  LTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETGI 158

Query: 246 V 246
           V
Sbjct: 159 V 159


>gi|294677360|ref|YP_003577975.1| LuxR family autoinducer-binding transcriptional regulator
           [Rhodobacter capsulatus SB 1003]
 gi|294476180|gb|ADE85568.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacter capsulatus SB 1003]
          Length = 250

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LT R+ E L W+ +GKTS +IA ILG +  TV  ++
Sbjct: 184 LTSRQREVLEWVGDGKTSADIAQILGPTTATVEKHL 219


>gi|228925087|ref|ZP_04088207.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228834569|gb|EEM80088.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 592

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|111023879|ref|YP_706851.1| hypothetical protein RHA1_ro06927 [Rhodococcus jostii RHA1]
 gi|110823409|gb|ABG98693.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 530

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  +++G+++ EIA  L I+  T  N++  +  K     R+ A   A+   +
Sbjct: 460 LTDREVEILRLVAQGRSNREIAADLFIAEKTARNHVERVYAKLGVNNRTQASLAAIDRGL 519

Query: 246 V 246
           V
Sbjct: 520 V 520


>gi|33865919|ref|NP_897478.1| DNA-binding response regulator [Synechococcus sp. WH 8102]
 gi|33633089|emb|CAE07900.1| possible DNA-binding response regulator [Synechococcus sp. WH 8102]
          Length = 235

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ELT RE++    ++ G  S+ IA +LGIS  TV  ++ + M K   + R+
Sbjct: 170 ELTQRELDVAAAVARGLKSNAIADLLGISLETVKTHVGNAMDKLGARDRT 219


>gi|300174919|dbj|BAJ10692.1| hypothetical bacteriocin immunity protein [Streptococcus
           thermophilus]
          Length = 117

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L ++ EG    EIA  L IS  T+ N+I +I+ K    +   AI  A
Sbjct: 55  ELTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLEVDSTIRAIIKA 110


>gi|317054459|ref|YP_004118484.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
 gi|316952454|gb|ADU71928.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 243

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + RE E L W S+G T  ++A +L I+ +T+  ++  +++K   K    AI+  + 
Sbjct: 173 FSARESEILYWCSKGYTYSQVAEMLNITVSTIKFHMGKVVKKMGVKNAKHAISLGIE 229


>gi|239944068|ref|ZP_04696005.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
 gi|239990520|ref|ZP_04711184.1| transcriptional regulator [Streptomyces roseosporus NRRL 11379]
 gi|291447534|ref|ZP_06586924.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
 gi|291350481|gb|EFE77385.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
          Length = 201

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  L+ RE+  L+   EG     IA  L ++  TV NY+A+ +RK+  + R  AI  A
Sbjct: 138 DMPLSPRELSVLSMAEEGDNVAGIAGRLHLTPGTVRNYLAAAIRKSGARNRLDAIRRA 195


>gi|228990919|ref|ZP_04150883.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
 gi|228768856|gb|EEM17455.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
          Length = 191

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+ RE+E L  I+ G T+ EIA  L IS  TV  ++++I+ K     R+ A  +A
Sbjct: 122 ELSERELEVLRLIARGLTNAEIAESLFISGKTVKGHVSNILSKLHMLDRTKAAVFA 177


>gi|227876197|ref|ZP_03994313.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|227843158|gb|EEJ53351.1| response regulator [Mobiluncus mulieris ATCC 35243]
          Length = 201

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +  G  +  IA  + +S  TV NY++S + KT   T +GA  YA
Sbjct: 141 LTPREQEVLREVEAGHHTATIAKTIYLSPGTVRNYLSSAISKTHADTSAGAARYA 195


>gi|237732242|ref|ZP_04562723.1| transcriptional regulator NarP [Citrobacter sp. 30_2]
 gi|226907781|gb|EEH93699.1| transcriptional regulator NarP [Citrobacter sp. 30_2]
          Length = 225

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214


>gi|229820312|ref|YP_002881838.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566225|gb|ACQ80076.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 216

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + L  ++ G ++ EIA  L ++ +TV  +++S+ RK   + R   + +A RN 
Sbjct: 155 DLSPRERDVLALLARGFSNAEIARELFVAESTVKTHVSSLTRKVGVRDRLHVVVWAYRNG 214

Query: 245 I 245
           I
Sbjct: 215 I 215


>gi|170728214|ref|YP_001762240.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813561|gb|ACA88145.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 221

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT ++ R
Sbjct: 156 LTKRERTIIQLVSSGARNREIADNLCISEHTVKAHISSIFRKTHSRNR 203


>gi|91786783|ref|YP_547735.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696008|gb|ABE42837.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 210

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    +++G+T+ +IA  L +S  TV+ Y   +M K +  + S    YA++N 
Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKALSLSVKTVSTYRTRVMEKMSLASNSDLTYYALKNK 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|73539297|ref|YP_299664.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
 gi|72122634|gb|AAZ64820.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
          Length = 911

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + + +E++ L  ++ G+++  IA  L +S NTV  ++  I +K     R+GA++ A++  
Sbjct: 848 QFSAKEMQVLALLASGQSNKAIARGLDVSENTVKFHLKQIFQKFGVDNRAGAVSQAMQQG 907

Query: 245 IV 246
           ++
Sbjct: 908 LL 909


>gi|27380416|ref|NP_771945.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27353580|dbj|BAC50570.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 121

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVR 242
           T RE E +  I+ G  +  IA  L IS NTV  +I +IMRK   + R+  AI YA++
Sbjct: 28  TPRERELMMLIARGMQNKNIAYELKISENTVRAHIGNIMRKYRLQNRTQIAIIYALK 84


>gi|15966568|ref|NP_386921.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307300395|ref|ZP_07580175.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318260|ref|ZP_07597695.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15075839|emb|CAC47394.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
 gi|306895942|gb|EFN26693.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904561|gb|EFN35145.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 260

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE ECL + +EG ++ EI+ I+  S  TV  ++ +  +K   K R+ A+  A 
Sbjct: 192 LTERERECLRYSAEGHSAKEISRIIHRSVPTVVMHLNAAAKKLGAKNRTQAVVRAT 247


>gi|83745563|ref|ZP_00942621.1| Hypothetical Protein RRSL_04622 [Ralstonia solanacearum UW551]
 gi|83727640|gb|EAP74760.1| Hypothetical Protein RRSL_04622 [Ralstonia solanacearum UW551]
          Length = 218

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE +    ++ G     IA  LGISR+TV  ++  + RKT T ++
Sbjct: 155 FHLTRREADVADLLARGAGPALIASTLGISRDTVRTHLKHVYRKTNTHSQ 204


>gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 215

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/62 (24%), Positives = 40/62 (64%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++ ELT RE++ +  +++G  + +IA I+ +S+ T+ +++++++ KT    R+    +A+
Sbjct: 151 RNVELTPRELKVVKLVAQGMANRDIAEIMEVSQRTIESHVSNMLGKTGLHNRTELARWAI 210

Query: 242 RN 243
            +
Sbjct: 211 ES 212


>gi|330468229|ref|YP_004405972.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328811200|gb|AEB45372.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 208

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           L+ RE E L  ++EG ++ EIA  L I   TV  +I S+M KT +  R
Sbjct: 151 LSAREQEVLRLVAEGLSNAEIAERLHIGVTTVKTHITSLMTKTGSPNR 198


>gi|298504796|gb|ADI83519.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 215

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L  I+ GK++ EIA   G+S  T+     SIM+K    + +    YA+R  +
Sbjct: 155 REREVLQLIAAGKSTKEIAFAFGVSLKTIETQRHSIMKKLNLYSIAELTKYAIREGL 211


>gi|291557697|emb|CBL34814.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium siraeum V10Sc8a]
          Length = 207

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE++ +  I++G ++ EIA  L +S  TV NYI+ I+ KT  + R+
Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRT 196


>gi|307729408|ref|YP_003906632.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307583943|gb|ADN57341.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 216

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVLKRIAAGQTITEIATELCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|282862235|ref|ZP_06271298.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563260|gb|EFB68799.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 230

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++D+IA  L +S  TV  ++   M K   + R+  +  A  + +
Sbjct: 165 LTGREREVLVLVAGGHSNDQIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGL 224

Query: 246 V 246
           V
Sbjct: 225 V 225


>gi|326388719|ref|ZP_08210310.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206793|gb|EGD57619.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 217

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  +++ L  + EGK + +IA  LG+S  TV  ++ +IMRK   + R+ A A A R+
Sbjct: 154 LTPTQLKVLLAVLEGKLNKQIAYDLGMSEATVKAHMTAIMRKLDVQNRTQA-ALAARS 210


>gi|313111442|ref|ZP_07797244.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310883746|gb|EFQ42340.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 204

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L +++ G T+  IA  L +S  TV+ Y + IM K    + +G I +A R+ +
Sbjct: 144 LSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHEL 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|300788715|ref|YP_003769006.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798229|gb|ADJ48604.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE++ L  +++G  + E+A  L +S  TV NY+ +++ K   + R  AI  A
Sbjct: 138 DCPLTARELDVLRMVAQGYGTVEVAARLYLSAGTVRNYLTTVVAKLNARNRVDAIRIA 195


>gi|283786004|ref|YP_003365869.1| nitrate/nitrite response regulator protein [Citrobacter rodentium
           ICC168]
 gi|282949458|emb|CBG89071.1| nitrate/nitrite response regulator protein [Citrobacter rodentium
           ICC168]
          Length = 215

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|271962179|ref|YP_003336375.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505354|gb|ACZ83632.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L  ++ G+T+ EIA    IS +TV ++IAS+M K   + R
Sbjct: 156 LTDREEQILATVARGRTNSEIADEFYISLSTVKSHIASLMAKLGARNR 203


>gi|269976896|ref|ZP_06183870.1| two-component system response regulator [Mobiluncus mulieris 28-1]
 gi|306819473|ref|ZP_07453180.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307701243|ref|ZP_07638265.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|269934727|gb|EEZ91287.1| two-component system response regulator [Mobiluncus mulieris 28-1]
 gi|304647765|gb|EFM45083.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307613637|gb|EFN92884.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 201

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +  G  +  IA  + +S  TV NY++S + KT   T +GA  YA
Sbjct: 141 LTPREQEVLREVEAGHHTATIAKTIYLSPGTVRNYLSSAISKTHADTSAGAARYA 195


>gi|261215329|ref|ZP_05929610.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260916936|gb|EEX83797.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 254

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVPNIMKKIGAANRT 237


>gi|225865300|ref|YP_002750678.1| response regulator [Bacillus cereus 03BB102]
 gi|225788745|gb|ACO28962.1| response regulator [Bacillus cereus 03BB102]
          Length = 597

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R  AI  A   
Sbjct: 535 YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTE 594

Query: 244 NIV 246
           NI+
Sbjct: 595 NIL 597


>gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 231

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ +
Sbjct: 168 IDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227

Query: 244 NIV 246
            + 
Sbjct: 228 GLA 230


>gi|207738906|ref|YP_002257299.1| hypothetical protein RSIPO_03601 [Ralstonia solanacearum IPO1609]
 gi|206592277|emb|CAQ59183.1| hypothetical protein RSIPO_03601 [Ralstonia solanacearum IPO1609]
          Length = 189

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE +    ++ G     IA  LGISR+TV  ++  + RKT T ++
Sbjct: 126 FHLTRREADVADLLARGAGPALIASTLGISRDTVRTHLKHVYRKTNTHSQ 175


>gi|39995788|ref|NP_951739.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982552|gb|AAR34012.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
          Length = 215

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L  I+ GK++ EIA   G+S  T+     SIM+K    + +    YA+R  +
Sbjct: 155 REREVLQLIAAGKSTKEIAFAFGVSLKTIETQRHSIMKKLNLYSVAELTKYAIREGL 211


>gi|56965096|ref|YP_176828.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911340|dbj|BAD65867.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 201

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L  RE E L  +  G++++ IA  + +S  TV NY++S M+K  T  R  A+  A
Sbjct: 141 LNDREQEMLRRVRNGESTETIASAMHLSLGTVRNYLSSAMQKLETTNRHDALRIA 195


>gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 237

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+++ +V
Sbjct: 177 TPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALQHRLV 236


>gi|313901612|ref|ZP_07835050.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468115|gb|EFR63591.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 272

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT I++G T+ EIA  L IS  TV  + ++IM K           YA+R+ +
Sbjct: 208 LTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHGL 267

Query: 246 V 246
           +
Sbjct: 268 I 268


>gi|301057051|gb|ADK54873.1| LuxR transcriptional regulator [uncultured soil bacterium]
          Length = 157

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE + L  +++   +DEIA  LGI+  TVN ++ +I  K  T+ RS
Sbjct: 97  LTAREQDVLRCLAKAYDNDEIADELGIAVRTVNRHLEAIRGKLGTRRRS 145


>gi|294632463|ref|ZP_06711023.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292835796|gb|EFF94145.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 228

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  +S G T+ +IA  L +S  TV  ++  I  K    TR+GA+A A
Sbjct: 167 LTDRERDILGQLSRGLTNRDIAKALFLSEATVKTHLGRIYDKLGVDTRAGAVAVA 221


>gi|294630515|ref|ZP_06709075.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|292833848|gb|EFF92197.1| two-component system, regulatory protein [Streptomyces sp. e14]
          Length = 225

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGREVE L  ++ G T+ E A  L IS  TV  ++   M K    +R+ A+  A  + +
Sbjct: 159 LTGREVEVLRLVARGLTNAEAADRLFISEATVKTHLNRTMTKLNLASRAQAVVVAYESGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|291518206|emb|CBK73427.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Butyrivibrio fibrisolvens 16/4]
          Length = 210

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +++ +E E +  ++EG ++ EIA  L +S  TV NY+++I+ K   + R+    + ++N
Sbjct: 152 DISEKEYEVIQLVAEGFSNKEIAQKLFLSEGTVRNYLSTILEKLELRDRTQLAIFYLKN 210


>gi|229030955|ref|ZP_04186971.1| Two-component protein Kinase [Bacillus cereus AH1271]
 gi|228730302|gb|EEL81266.1| Two-component protein Kinase [Bacillus cereus AH1271]
          Length = 592

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|52142219|ref|YP_084610.1| response regulator [Bacillus cereus E33L]
 gi|51975688|gb|AAU17238.1| response regulator [Bacillus cereus E33L]
          Length = 597

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R  AI  A   
Sbjct: 535 YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNREEAIKMARTE 594

Query: 244 NIV 246
           NI+
Sbjct: 595 NIL 597


>gi|47564405|ref|ZP_00235450.1| two-component protein Kinase [Bacillus cereus G9241]
 gi|47558557|gb|EAL16880.1| two-component protein Kinase [Bacillus cereus G9241]
          Length = 592

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|30261839|ref|NP_844216.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Ames]
 gi|47527080|ref|YP_018429.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49184673|ref|YP_027925.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Sterne]
 gi|65319116|ref|ZP_00392075.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|165869394|ref|ZP_02214053.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|170686283|ref|ZP_02877505.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|170707310|ref|ZP_02897765.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|177650481|ref|ZP_02933448.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190566515|ref|ZP_03019433.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815387|ref|YP_002815396.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228933122|ref|ZP_04095982.1| Response regulator [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229600997|ref|YP_002866221.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
 gi|254683338|ref|ZP_05147199.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254734693|ref|ZP_05192405.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254755345|ref|ZP_05207379.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Vollum]
 gi|254759882|ref|ZP_05211906.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Australia 94]
 gi|30256067|gb|AAP25702.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Ames]
 gi|47502228|gb|AAT30904.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178600|gb|AAT53976.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Sterne]
 gi|164714834|gb|EDR20352.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|170127809|gb|EDS96681.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|170669980|gb|EDT20721.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|172083625|gb|EDT68685.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190562650|gb|EDV16617.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003074|gb|ACP12817.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228826536|gb|EEM72310.1| Response regulator [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229265405|gb|ACQ47042.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
          Length = 212

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|329934424|ref|ZP_08284503.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|329306020|gb|EGG49875.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
          Length = 227

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L  I+ G T+ EIA  LGI+  TV +++ +++RK   + R
Sbjct: 158 LTAREHDVLRLIASGLTNAEIAGHLGIAVGTVKSHVNAVLRKLELRDR 205


>gi|304383484|ref|ZP_07365946.1| transcriptional regulator [Prevotella marshii DSM 16973]
 gi|304335403|gb|EFM01671.1| transcriptional regulator [Prevotella marshii DSM 16973]
          Length = 212

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKD  LT  E E L  I+ G T+ EIA     S +TVN +  +I RK A  T   A  YA
Sbjct: 141 GKDL-LTKTETEILKDIALGMTTREIADKRYSSFHTVNTHRKNIFRKIAVNTAYEATKYA 199

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 200 LRAGLI 205


>gi|288563091|pdb|3KLN|A Chain A, Vibrio Cholerae Vpst
 gi|288563092|pdb|3KLN|B Chain B, Vibrio Cholerae Vpst
 gi|288563093|pdb|3KLN|C Chain C, Vibrio Cholerae Vpst
 gi|288563094|pdb|3KLN|D Chain D, Vibrio Cholerae Vpst
 gi|288563095|pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563096|pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563097|pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563098|pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp
          Length = 225

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NN
Sbjct: 159 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 217

Query: 245 I 245
           I
Sbjct: 218 I 218


>gi|258625244|ref|ZP_05720156.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|262173344|ref|ZP_06041021.1| transcriptional regulator VpsT [Vibrio mimicus MB-451]
 gi|258582491|gb|EEW07328.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|261890702|gb|EEY36689.1| transcriptional regulator VpsT [Vibrio mimicus MB-451]
          Length = 224

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NN
Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216

Query: 245 I 245
           I
Sbjct: 217 I 217


>gi|239942985|ref|ZP_04694922.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989445|ref|ZP_04710109.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446458|ref|ZP_06585848.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291349405|gb|EFE76309.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 219

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE++    + +G  + EIA  L +  +T+ +++  + RK   + R+  + +A  N +
Sbjct: 159 LTGREIDVFRLLVQGYGNAEIARKLVLGESTIKSHVQHLYRKLGVRDRAQVVIFAYENGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|257790383|ref|YP_003180989.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257474280|gb|ACV54600.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 462

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L +++EG +   I+ +L IS NTV  +I +I RK    +R
Sbjct: 406 LTAREQEILAYLAEGHSGAYISDVLFISPNTVRTHIHNIYRKLDVSSR 453


>gi|226349997|ref|YP_002777110.1| two-component response regulator [Rhodococcus opacus B4]
 gi|226245909|dbj|BAH47173.1| two-component response regulator [Rhodococcus opacus B4]
          Length = 209

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE+E +  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+
Sbjct: 148 LSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRA 196


>gi|255606123|ref|XP_002538507.1| Response regulator gacA, putative [Ricinus communis]
 gi|223511807|gb|EEF23876.1| Response regulator gacA, putative [Ricinus communis]
          Length = 268

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E    ++EGK +++IA  L +S  TV NY  +I +K    +    +  A+R+ 
Sbjct: 205 QLSAREFEIFRLLAEGKETEDIAQALKLSVKTVANYQTTIKQKLGITSPVEMVRLAIRHG 264

Query: 245 IV 246
           ++
Sbjct: 265 VI 266


>gi|186470626|ref|YP_001861944.1| LuxR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196935|gb|ACC74898.1| transcriptional regulator, LuxR family [Burkholderia phymatum
           STM815]
          Length = 489

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           L+ RE++ L  IS+G ++ E+A  L +S +TV  ++ S+ RK    TR
Sbjct: 429 LSAREIDVLRGISQGASNKEVARDLSLSPSTVRTHVESVFRKLDCSTR 476


>gi|323357168|ref|YP_004223564.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323273539|dbj|BAJ73684.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 200

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L   + G+T  EIA  L +S  TV N+++S++ K    +R  A  +A
Sbjct: 140 LTDRELDVLRAGARGETVAEIAASLHLSAGTVRNHVSSVLGKLGLASRQQATIHA 194


>gi|228901714|ref|ZP_04065887.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222]
 gi|228857943|gb|EEN02430.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222]
          Length = 592

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|229179482|ref|ZP_04306835.1| Two-component protein Kinase [Bacillus cereus 172560W]
 gi|228603983|gb|EEK61451.1| Two-component protein Kinase [Bacillus cereus 172560W]
          Length = 592

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQRALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|254421396|ref|ZP_05035114.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188885|gb|EDX83849.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 242

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE E L  I  G ++ EIA  L +S  TV N++ S++ +   + R+ A
Sbjct: 177 LTPRETEVLVCIGNGASNKEIAQQLFLSEGTVKNHVTSVLSRLGLRDRTQA 227


>gi|149375232|ref|ZP_01893004.1| ATP-dependent transcriptional regulator [Marinobacter algicola
           DG893]
 gi|149360596|gb|EDM49048.1| ATP-dependent transcriptional regulator [Marinobacter algicola
           DG893]
          Length = 907

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L  I++G  + +IA  +G++  TV  +I ++  K A  +R+ A+A A
Sbjct: 846 LSQRELEVLDLINQGLANKDIANTMGVAPTTVKAHIRNLYGKLAVGSRTEALAKA 900


>gi|126726482|ref|ZP_01742323.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126704345|gb|EBA03437.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 273

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 26/36 (72%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LT R++E L W+++GKT+ + A I+G++  T+  ++
Sbjct: 204 LTKRQIEVLEWVADGKTTADAATIMGLTNATIEKHL 239


>gi|330809600|ref|YP_004354062.1| two-component Response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377708|gb|AEA69058.1| Putative two-component Response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 210

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           Y A + +    +   D ELT RE + L  + +G  + E+A  L IS  TV  +  SI RK
Sbjct: 130 YSAEIAQRLATNPNTDSELTPRESQVLAKMVQGLNNKEMARELDISVRTVETHRLSIRRK 189

Query: 228 TATKTRSGAIAYAVRNNIV 246
                 +  + YA+ + I+
Sbjct: 190 LNIDKPAALVKYAIDHGII 208


>gi|317124121|ref|YP_004098233.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588209|gb|ADU47506.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM
           43043]
          Length = 976

 Score = 37.7 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L  +  G+T  EIA  L IS  TV+ ++++++RKT T +R
Sbjct: 916 LTRREREVLGHLVVGRTYAEIARDLFISDKTVSVHVSNLLRKTGTSSR 963


>gi|298250780|ref|ZP_06974584.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548784|gb|EFH82651.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 223

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L  ++EG ++ +IA  L ++  TV N++++I+ K  T  R+ A   A
Sbjct: 163 LSPREIEILKLLAEGASNRKIAEQLVLAEGTVKNHVSNILSKLHTGNRTQAAHLA 217


>gi|312196796|ref|YP_004016857.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228132|gb|ADP80987.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 221

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I+EG T+ +IA  + ++  TV NY++S++ K   ++R+ A  +A +
Sbjct: 162 LTDQERRILALIAEGLTNRQIANRMYLAEKTVKNYVSSMLSKLGLESRTQAAVFATK 218


>gi|228945442|ref|ZP_04107796.1| Response regulator [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228814245|gb|EEM60512.1| Response regulator [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 212

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|229162147|ref|ZP_04290117.1| Two-component protein Kinase [Bacillus cereus R309803]
 gi|228621304|gb|EEK78160.1| Two-component protein Kinase [Bacillus cereus R309803]
          Length = 557

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 494 YELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEI 553

Query: 244 NIV 246
            I+
Sbjct: 554 GII 556


>gi|294815293|ref|ZP_06773936.1| Transcriptional regulator, LuxR family [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443648|ref|ZP_08218382.1| transcriptional regulator, LuxR family protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|294327892|gb|EFG09535.1| Transcriptional regulator, LuxR family [Streptomyces clavuligerus
           ATCC 27064]
          Length = 251

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           RE + L  IS+G T  +IA  LGISR+TV+ Y+  I  K
Sbjct: 177 RESQVLGQISQGLTHGQIATRLGISRHTVDTYVKRIRTK 215


>gi|224583267|ref|YP_002637065.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467794|gb|ACN45624.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 238

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 177 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRIAA 227


>gi|254511024|ref|ZP_05123091.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
 gi|221534735|gb|EEE37723.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
          Length = 233

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E L W + GK+  +I  IL IS  TV  ++ S   K    T   A+  A+
Sbjct: 170 LSSRELEILQWAAAGKSQQDIGDILSISHRTVEVHLRSSREKLNALTTPQAVGRAI 225


>gi|86140863|ref|ZP_01059422.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832805|gb|EAQ51254.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 208

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT R++E L  I++GKTS EIA  L I  +TV+ +  ++MR    K +   + YA+
Sbjct: 147 LTKRQLEILRLIAQGKTSREIADELFIGVHTVDTHRKNMMRILELKGKGELLRYAL 202


>gi|333027679|ref|ZP_08455743.1| putative two component transcriptional regulator [Streptomyces sp.
           Tu6071]
 gi|332747531|gb|EGJ77972.1| putative two component transcriptional regulator [Streptomyces sp.
           Tu6071]
          Length = 215

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I +G ++ EIA  L +S +TV  +++ ++ KT  ++R+ A   A RN 
Sbjct: 155 DLTEREVDVLRLIRDGLSNAEIADRLVVSLHTVKTHVSRVLTKTGCQSRAQAAVLA-RNT 213

Query: 245 I 245
           +
Sbjct: 214 L 214


>gi|318060430|ref|ZP_07979153.1| transcriptional regulator [Streptomyces sp. SA3_actG]
 gi|318081237|ref|ZP_07988569.1| transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 197

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+  L   +EG++   IA  L ++  TV NY+A+ +RKT  + R  AI  A
Sbjct: 137 LSDRELSVLGLAAEGESVAGIAGGLHLAAGTVRNYLAAAIRKTGARNRLDAIRLA 191


>gi|307726840|ref|YP_003910053.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587365|gb|ADN60762.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 223

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +L+ RE E L  I++G+T+ EIA  L I+  TV  ++  I+RK    +R
Sbjct: 163 DLSVREAEILEHIAQGRTNKEIARALNIAEATVKIHVQHILRKLKLSSR 211


>gi|282863904|ref|ZP_06272961.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560982|gb|EFB66527.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 231

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I +G ++ EIA  L +S +TV  +++ ++ KT  ++R+ A   A RN 
Sbjct: 171 DLTEREVDVLRLIRDGLSNAEIAGELVVSLHTVKTHVSRVLMKTGCQSRAQAAVLA-RNT 229

Query: 245 I 245
           +
Sbjct: 230 L 230


>gi|284041315|ref|YP_003391245.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283820608|gb|ADB42446.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 219

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  I++  T+ EIA  L IS  TV+ +  ++++K   K+  G   +A+R+ 
Sbjct: 158 QLTPRELEILKLIAQEFTTGEIANQLFISEATVDTHRRNMIQKLRAKSIVGLANFAIRHG 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|213850302|ref|ZP_03381200.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 217

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|170726344|ref|YP_001760370.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC
           51908]
 gi|169811691|gb|ACA86275.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Shewanella woodyi ATCC 51908]
          Length = 205

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           ++P  + ++ + L +  LL    ++  +S +       ELT R+ E L W+  GK++ EI
Sbjct: 91  MYPAIQYVVINELLKEVLLNKTTSDEPQSNEGECISTIELTQRQHEILHWVKLGKSNWEI 150

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + IL IS +TV  ++  I ++     R  A+
Sbjct: 151 STILSISIDTVKFHLRGIYKRLGVSNRVQAV 181


>gi|332829196|gb|EGK01860.1| hypothetical protein HMPREF9455_02008 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 292

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S+ +   K   L+ RE++ L  ++ G  + E+A  L IS NTV ++  +I  K   KT S
Sbjct: 214 SHAIKATKAQALSQRELDVLRLVALGLLNKEVADKLNISLNTVLSHRKNITAKLGIKTVS 273

Query: 235 GAIAYAVRNNIV 246
           G I Y + N  +
Sbjct: 274 GLIFYCMTNGYI 285


>gi|317488814|ref|ZP_07947347.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|316912119|gb|EFV33695.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 462

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L +++EG +   I+ +L IS NTV  +I +I RK    +R
Sbjct: 406 LTAREQEILAYLAEGHSGAYISDVLFISPNTVRTHIHNIYRKLDVSSR 453


>gi|317505003|ref|ZP_07962951.1| transcriptional regulator [Prevotella salivae DSM 15606]
 gi|315663885|gb|EFV03604.1| transcriptional regulator [Prevotella salivae DSM 15606]
          Length = 318

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +L+ RE + +  + +G ++ EIA  L IS NTV  +  +I RK    + +G   YA+ 
Sbjct: 248 DDQLSQREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIV 307

Query: 243 NNIV 246
           N++V
Sbjct: 308 NHLV 311


>gi|163732991|ref|ZP_02140435.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149]
 gi|161393526|gb|EDQ17851.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149]
          Length = 159

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 168 YQANMFKSYDVHWG------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  ++ KSYD+H G      K FE  G+  E L  I     + +  + LGIS   VN+Y 
Sbjct: 42  HNESLLKSYDIHLGFAPVGHKQFEGDGKTPEGLYRIDRRNPNSDFHLSLGISYPNVNDYA 101

Query: 222 ASIMRKTATKTRSGAI 237
           A+   K   K+  G I
Sbjct: 102 AA---KAVGKSAGGDI 114


>gi|153808058|ref|ZP_01960726.1| hypothetical protein BACCAC_02344 [Bacteroides caccae ATCC 43185]
 gi|149129667|gb|EDM20881.1| hypothetical protein BACCAC_02344 [Bacteroides caccae ATCC 43185]
          Length = 184

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++  E+  +  + +G  ++EIA  L +S +TV N+I S+  K     +S  I YA +NN+
Sbjct: 122 ISDAEMRVMQMVYQGANNEEIADKLYLSPHTVKNHIKSVYIKLGIHEKSEFIQYAHKNNL 181


>gi|145588866|ref|YP_001155463.1| response regulator receiver protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047272|gb|ABP33899.1| response regulator receiver protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 187

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           S DV   +D+E LT RE E   W+ +G  + +IAV LG +  T+  + A +M K
Sbjct: 109 SLDVETKRDYENLTPREREVCAWLVKGLLNKDIAVKLGTTDATIKVHKARVMDK 162


>gi|54023132|ref|YP_117374.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54014640|dbj|BAD56010.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 863

 Score = 37.7 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+  L  +  G+T  +IA  LG+S NTV  ++  I  K    +R GA+  A R+ +
Sbjct: 803 LTDTELLVLKQLPTGRTVGQIAADLGVSINTVKTHLRGIYGKLGANSRVGALDTARRSGL 862

Query: 246 V 246
           +
Sbjct: 863 L 863


>gi|310643281|ref|YP_003948039.1| transcriptional regulatory protein degu (protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
 gi|309248231|gb|ADO57798.1| Transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
          Length = 216

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +++G  + E+A  L IS  TV    A IM K   K+R   + YA++  +
Sbjct: 154 LSKRELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLNLKSRPELVQYALKKKM 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|298245139|ref|ZP_06968945.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552620|gb|EFH86485.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 337

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LTGRE E L  +  G+ + EIA  L I+ +TV+ ++ +I  K   + R+ AI +
Sbjct: 221 LTGREREILDLMRLGRKNREIAKELCIAESTVHKHVQNIFEKLRARNRTEAIYF 274


>gi|291301776|ref|YP_003513054.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570996|gb|ADD43961.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 132

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  +  +S GK++  I   L IS +TV  Y   + RK     R+ A+A A+R  +
Sbjct: 71  LTERELTVVIGMSNGKSNARIGRELHISEDTVKTYARRLFRKLGVGDRTQAVAVALRTGL 130

Query: 246 V 246
           +
Sbjct: 131 I 131


>gi|288926112|ref|ZP_06420040.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
 gi|288337152|gb|EFC75510.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
          Length = 313

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  + +G T+ EIA  L IS NTV  +  +I +K    + +G   YA+ NN+
Sbjct: 246 LSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIAKKLQIHSPAGLTIYAIVNNL 305

Query: 246 V 246
           V
Sbjct: 306 V 306


>gi|226315402|ref|YP_002775298.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226098352|dbj|BAH46794.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 596

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 31/63 (49%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE E L  +S+G     IA  L +S  TV NY +++  K     R  AI  A   
Sbjct: 534 YGLTKREREILQLLSDGLRYKSIATKLYLSEGTVRNYCSTLYSKLGVSNREEAIELARTE 593

Query: 244 NIV 246
           NI+
Sbjct: 594 NIL 596


>gi|167839763|ref|ZP_02466447.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 257

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   KD  ELT RE + L +++  KT+ +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 149 SYRIDSPKDARELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 208

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 209 NELIDLAA 216


>gi|17988034|ref|NP_540668.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62289171|ref|YP_220964.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|17983780|gb|AAL52932.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62195303|gb|AAX73603.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str.
           9-941]
          Length = 230

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 165 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 213


>gi|13471370|ref|NP_102936.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099]
 gi|14022112|dbj|BAB48722.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099]
          Length = 206

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE E L  +S+G T+ +IA   GIS NTV  ++ ++  K   + R+ A+A   R
Sbjct: 139 QLTVRERELLAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVALYAR 196


>gi|87309029|ref|ZP_01091167.1| two-component system response regulator-like protein (Nar family
           protein) [Blastopirellula marina DSM 3645]
 gi|87288372|gb|EAQ80268.1| two-component system response regulator-like protein (Nar family
           protein) [Blastopirellula marina DSM 3645]
          Length = 220

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E  T I  G+TS EIA  L +S +TV+ +   + RK + K+ +  I  A++
Sbjct: 158 LTNREREIFTMIGHGQTSAEIASQLNLSVHTVDTHRERLCRKISAKSSAELIRRAMQ 214


>gi|330468719|ref|YP_004406462.1| regulatory protein LuxR [Verrucosispora maris AB-18-032]
 gi|328811690|gb|AEB45862.1| regulatory protein, LuxR [Verrucosispora maris AB-18-032]
          Length = 956

 Score = 37.7 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  ++EG T+ EI   L IS  T+  +++ I  K   +TR  A A  +R+
Sbjct: 897 LTAREREVLAAVAEGLTNREIGQRLYISERTIGVHVSHIFDKLQVRTRVQASAIFLRS 954


>gi|302535729|ref|ZP_07288071.1| luxR family two component system response regulator [Streptomyces
           sp. C]
 gi|302444624|gb|EFL16440.1| luxR family two component system response regulator [Streptomyces
           sp. C]
          Length = 203

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S   K   + R 
Sbjct: 132 AADAISAGDSPLTAREAEVLELAADGAPIAEIAERASLSQGTVRNYLSSAATKLGAENRH 191

Query: 235 GAI 237
            A+
Sbjct: 192 TAV 194


>gi|254713235|ref|ZP_05175046.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M644/93/1]
 gi|254716411|ref|ZP_05178222.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M13/05/1]
          Length = 245

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228


>gi|239944389|ref|ZP_04696326.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239990844|ref|ZP_04711508.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291447858|ref|ZP_06587248.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350805|gb|EFE77709.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 217

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G T+ EIA  L IS  TV  ++  +  K   K R+ A+A      I
Sbjct: 156 LSAREREVLVLVARGTTNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVAVGYDRGI 215

Query: 246 V 246
           +
Sbjct: 216 L 216


>gi|254461185|ref|ZP_05074601.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacterales bacterium HTCC2083]
 gi|206677774|gb|EDZ42261.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 251

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 26/36 (72%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LT R+ E L W+ +GKT+ +IA+++G++  TV  ++
Sbjct: 185 LTDRQREALEWVGDGKTTQDIALLMGLTAATVEKHL 220


>gi|170728910|ref|YP_001762936.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169814257|gb|ACA88841.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 198

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           G++  L+ +E + L   SEGKT+ EIA +L I+  TV NY++    K     R
Sbjct: 133 GENDPLSDKERKALRLASEGKTTSEIAALLFIAEGTVRNYLSEATSKLHGSNR 185


>gi|312960770|ref|ZP_07775275.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284428|gb|EFQ63004.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 218

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ + L  I+ GKT+ EIA  L IS  TV  +++++++     TR+ A A
Sbjct: 149 LTARQKQVLGLIAAGKTNKEIAKQLDISPFTVRIHVSTLLKSLGVPTRAAAAA 201


>gi|308454233|ref|XP_003089765.1| hypothetical protein CRE_07125 [Caenorhabditis remanei]
 gi|308269000|gb|EFP12953.1| hypothetical protein CRE_07125 [Caenorhabditis remanei]
          Length = 831

 Score = 37.7 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E +  ++   ++ EIA+ LG+SR TV N++A+ +RKT+ + R     +  +N
Sbjct: 775 LSKREAE-VARLAVTMSNPEIAMRLGLSRRTVENHVANALRKTSLRNRRELAEFVEQN 831


>gi|302538423|ref|ZP_07290765.1| response regulator [Streptomyces sp. C]
 gi|302447318|gb|EFL19134.1| response regulator [Streptomyces sp. C]
          Length = 223

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT REVE L  I+ G  +  IA  L +S  TV N+I  +  K    +R+ A+A A
Sbjct: 159 LTSREVEVLELIARGHDNRRIARELVLSEKTVRNHITHVFEKLQVTSRAEAVARA 213


>gi|318060483|ref|ZP_07979206.1| regulatory protein LuxR [Streptomyces sp. SA3_actG]
 gi|318076515|ref|ZP_07983847.1| regulatory protein LuxR [Streptomyces sp. SA3_actF]
          Length = 223

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I +G ++ EIA  L +S +TV  +++ ++ KT  ++R+ A   A RN 
Sbjct: 163 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLA-RNT 221

Query: 245 I 245
           +
Sbjct: 222 L 222


>gi|261212992|ref|ZP_05927276.1| transcriptional regulator VpsT [Vibrio sp. RC341]
 gi|260838057|gb|EEX64734.1| transcriptional regulator VpsT [Vibrio sp. RC341]
          Length = 224

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NN
Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216

Query: 245 I 245
           I
Sbjct: 217 I 217


>gi|291302684|ref|YP_003513962.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290571904|gb|ADD44869.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 134

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ GK++ EI   L I+ +TV  +   + RK   + R+ A+A A R  I
Sbjct: 73  LSARESQVLLAIASGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRVGI 132

Query: 246 V 246
           +
Sbjct: 133 L 133


>gi|311740276|ref|ZP_07714107.1| LuxR family DNA-binding response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304659|gb|EFQ80731.1| LuxR family DNA-binding response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 205

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L  +S G ++ E+A  L IS  TV  ++  I +K   +TR+ A+  A
Sbjct: 145 LSTRELEILRALSTGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVA 199


>gi|297589527|ref|ZP_06948168.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MN8]
 gi|283471613|emb|CAQ50824.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Staphylococcus aureus subsp. aureus
           ST398]
 gi|297578038|gb|EFH96751.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MN8]
 gi|298695655|gb|ADI98877.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|312437187|gb|ADQ76258.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|323439615|gb|EGA97334.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323442719|gb|EGB00346.1| two-component response regulator [Staphylococcus aureus O46]
          Length = 200

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K++   + YA++  +
Sbjct: 138 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKL 197

Query: 246 V 246
           +
Sbjct: 198 L 198


>gi|194467990|ref|ZP_03073976.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
 gi|194452843|gb|EDX41741.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
          Length = 217

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 172 MFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           + K   +H+  G    L+ RE E L  I  G T+ EIA  + IS  TV  +   IM+K  
Sbjct: 139 VIKGGSMHFDLGNYIALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLN 198

Query: 230 TKTRSGAIAYAVRNNIV 246
             + +  + YAV++ +V
Sbjct: 199 LASHAELLHYAVKHQLV 215


>gi|42782344|ref|NP_979591.1| response regulator receiver domain-containing protein [Bacillus
           cereus ATCC 10987]
 gi|42738269|gb|AAS42199.1| Response regulator receiver domain protein [Bacillus cereus ATCC
           10987]
          Length = 592

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 529 YELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            I+
Sbjct: 589 GII 591


>gi|291530798|emb|CBK96383.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium siraeum 70/3]
          Length = 207

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE++ +  I++G ++ EIA  L +S  TV NYI+ I+ KT  + R+
Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRT 196


>gi|291614955|ref|YP_003525112.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291585067|gb|ADE12725.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 216

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 167 AYQANMFKSY-DVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           A  A+M   + + H    F ELT RE   L  +S+G T+ EI     ++  TV +Y+ SI
Sbjct: 131 ALAADMLTEFSNPHPIDSFSELTARETTILELLSQGLTNREIGERTYLAEKTVKHYMTSI 190

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           ++K   ++R+ A   A++ +
Sbjct: 191 LQKLHVRSRTEAALIAMQRH 210


>gi|167749619|ref|ZP_02421746.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702]
 gi|167657372|gb|EDS01502.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702]
          Length = 207

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE++ +  I++G ++ EIA  L +S  TV NYI+ I+ KT  + R+
Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRT 196


>gi|83815376|ref|YP_444329.1| ECF subfamily RNA polymerase sigma-70 factor [Salinibacter ruber
           DSM 13855]
 gi|83756770|gb|ABC44883.1| possible sigma-70 factor, ECF subfamily, putative [Salinibacter
           ruber DSM 13855]
          Length = 194

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMR 226
           QA+  +  D  W    ELTGR+ E L     EG + +E A ++GIS  TVNN+I   ++
Sbjct: 117 QADADQLEDRLWQWIGELTGRQREALVLTRFEGLSHEEAADVMGISPRTVNNHIVRALK 175


>gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 231

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ +
Sbjct: 168 IDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227

Query: 244 NIV 246
            + 
Sbjct: 228 GLA 230


>gi|311109177|ref|YP_003982030.1| response regulator 18 [Achromobacter xylosoxidans A8]
 gi|310763866|gb|ADP19315.1| response regulator 18 [Achromobacter xylosoxidans A8]
          Length = 236

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE + L  +SEG  + EIA  L +SR TV  ++  I RK A  +R+ AI +A R 
Sbjct: 175 LSPRESQILRLVSEGLGNREIAEELHLSRYTVECHVKHIYRKLAVSSRTRAI-HAART 231


>gi|303237715|ref|ZP_07324275.1| transcriptional regulator, LuxR family [Prevotella disiens
           FB035-09AN]
 gi|302482167|gb|EFL45202.1| transcriptional regulator, LuxR family [Prevotella disiens
           FB035-09AN]
          Length = 203

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ + +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV +  
Sbjct: 138 LSNREIEVLSLVVQGYINKEIASKLCISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 197

Query: 246 V 246
           V
Sbjct: 198 V 198


>gi|302036302|ref|YP_003796624.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604366|emb|CBK40698.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 216

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +   G    LTGR+ E L  I+EG ++ +IA  L +S  TV  + A +M +       G 
Sbjct: 144 EAQTGPLARLTGRQREILQLIAEGCSTKQIAQRLDLSVKTVETHRAQLMERLDIHDVPGL 203

Query: 237 IAYAVRNNIV 246
           +  A+R  +V
Sbjct: 204 VRLAIRTGLV 213


>gi|300694488|ref|YP_003750461.1| transcription regulator protein luxr [Ralstonia solanacearum PSI07]
 gi|299076525|emb|CBJ35850.1| putative transcription regulator protein LuxR [Ralstonia
           solanacearum PSI07]
          Length = 216

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           F LT REV+    ++ G     IA  LGISR+TV  ++  + RKT T 
Sbjct: 153 FHLTRREVDVADLLARGAGPALIARTLGISRDTVRTHLKHVYRKTNTH 200


>gi|297194468|ref|ZP_06911866.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718721|gb|EDY62629.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 227

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 13/122 (10%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           D R   L   +  +  G  LL P    R+I R       +L+A Q     + +   G D 
Sbjct: 112 DTRPADLLAAIRTVAAGESLLSPGPTSRLIAR-------VLSAPQ---VPAANGAGGPDV 161

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + LT ++ G  + EIA  LG+S  T   +++ IM K   + R+  +  A  + 
Sbjct: 162 -LTDRERQVLTLVARGLNNTEIAESLGLSPLTAKTHVSRIMSKLCARDRAQLVIVAYESG 220

Query: 245 IV 246
           +V
Sbjct: 221 LV 222


>gi|160890178|ref|ZP_02071181.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492]
 gi|156860566|gb|EDO53997.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492]
          Length = 254

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           D +L+ RE E L  I +G  S EIA  LG+S  TVNN+  +I+ K
Sbjct: 190 DKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNHRKNILSK 234


>gi|116694576|ref|YP_728787.1| LuxR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529075|emb|CAJ95422.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16]
          Length = 379

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K F LT  E+E    + +G T DE A+ LGI +NT   ++  I  KT   TR   +   +
Sbjct: 313 KLFHLTPTEIELALLMVDGLTLDEAAMRLGIKKNTARAHLRGIFAKTGA-TRQALLVKML 371

Query: 242 RNNIV 246
            +++V
Sbjct: 372 LSSVV 376


>gi|21222053|ref|NP_627832.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256786858|ref|ZP_05525289.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289770753|ref|ZP_06530131.1| two-component system regulator [Streptomyces lividans TK24]
 gi|4753862|emb|CAB42025.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
 gi|289700952|gb|EFD68381.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 221

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +  S    +G   +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   +
Sbjct: 147 LMPSAQAAYG---DLTDRETEVLVLIAQGLSNGEIAERLVVAESTIKTHVSRILVKLGLR 203

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A    +V
Sbjct: 204 DRTQAAVFAYEARLV 218


>gi|15595232|ref|NP_248724.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107099028|ref|ZP_01362946.1| hypothetical protein PaerPA_01000036 [Pseudomonas aeruginosa PACS2]
 gi|116053755|ref|YP_788190.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152985987|ref|YP_001345432.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218888780|ref|YP_002437644.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254237723|ref|ZP_04931046.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719]
 gi|254243146|ref|ZP_04936468.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192]
 gi|296386510|ref|ZP_06876009.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|13959718|sp|P24908|TRPO_PSEAE RecName: Full=Putative transcriptional regulator
 gi|9945855|gb|AAG03424.1|AE004443_2 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115588976|gb|ABJ14991.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169654|gb|EAZ55165.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719]
 gi|126196524|gb|EAZ60587.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192]
 gi|150961145|gb|ABR83170.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218769003|emb|CAW24761.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 207

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L +++ G T+  IA  L +S  TV+ Y + IM K    + +G I +A R+ +
Sbjct: 147 LSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHEL 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|297156827|gb|ADI06539.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 222

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G T+DEIA  L +S  T   +++ IM K   + RS  +  A  + +
Sbjct: 155 LTDREREVMRLVAAGLTNDEIAARLVLSPATAKTHVSRIMTKLDVRDRSQLVVLAYESGM 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|296130130|ref|YP_003637380.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296021945|gb|ADG75181.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 208

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY-AVRNN 244
           LT  E+  L  I EG ++ EIA  LG++  TV N+I S++ K   + R+   A+ A R N
Sbjct: 140 LTPSELRVLDLIGEGMSNREIAERLGVAEKTVKNHITSLLAKMGLQRRTQVAAWVASRKN 199


>gi|258593101|emb|CBE69412.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 227

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L +I+ G+T+  IA  L IS  T  N+   I+ K    T+  A+A A R
Sbjct: 167 LTPREQEVLRFIARGETAKGIAKALQISTTTARNHTQKILVKLGLHTKLEAVAVAYR 223


>gi|291085111|ref|ZP_06352103.2| nitrate/nitrite response regulator protein NarL [Citrobacter
           youngae ATCC 29220]
 gi|291072010|gb|EFE10119.1| nitrate/nitrite response regulator protein NarL [Citrobacter
           youngae ATCC 29220]
          Length = 225

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 164 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214


>gi|282864894|ref|ZP_06273948.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560319|gb|EFB65867.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 210

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  + EG ++ +I+  L +S+ TV +++  I  K    +R+ A+A A    +
Sbjct: 148 LTKRELEVLQLVGEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|291299247|ref|YP_003510525.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568467|gb|ADD41432.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 188

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E +  +++G T+ EIA  L IS  T  N++A++  K     R G  A+A
Sbjct: 124 LSERELEVVALVAQGLTNAEIAEKLFISAGTAKNHLANVQAKLGVGNRVGIAAWA 178


>gi|207722432|ref|YP_002252868.1| hypothetical protein RSMK05040 [Ralstonia solanacearum MolK2]
 gi|206587611|emb|CAQ18193.1| hypothetical protein RSMK05040 [Ralstonia solanacearum MolK2]
          Length = 218

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE +    ++ G     IA  LGISR+TV  ++  + RKT T ++
Sbjct: 155 FHLTRREADVADLLARGAGPALIASTLGISRDTVRTHLKHVYRKTNTHSQ 204


>gi|297193217|ref|ZP_06910615.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720487|gb|EDY64395.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 221

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + R+ A AY  R
Sbjct: 157 LTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMERRAQAAAYVAR 213


>gi|190894996|ref|YP_001985289.1| transcriptional activator protein [Rhizobium etli CIAT 652]
 gi|190700657|gb|ACE94739.1| transcriptional activator protein [Rhizobium etli CIAT 652]
 gi|327193288|gb|EGE60194.1| transcriptional activator protein [Rhizobium etli CNPAF512]
          Length = 241

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE++CL   + G  + +I   L IS + V  Y+AS  RK    T S A+A A
Sbjct: 181 LSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARA 235


>gi|170741132|ref|YP_001769787.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168195406|gb|ACA17353.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 251

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ELT ++V  L  I +GK + +IA  LG+  +TV  +++ I+RK    +R+
Sbjct: 181 ELTPQQVRVLLMIRQGKLNKQIAHELGVGDSTVKAHVSEILRKLGVISRT 230


>gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 237

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+++ +V
Sbjct: 177 TPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALQHRLV 236


>gi|85858970|ref|YP_461172.1| LuxR family regulatory protein [Syntrophus aciditrophicus SB]
 gi|85722061|gb|ABC77004.1| bacterial regulatory protein, LuxR family [Syntrophus
           aciditrophicus SB]
          Length = 310

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 7/50 (14%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGIS-------RNTVNNYIASIMRKT 228
            T +E++  + I EGK + EIA ILGIS       RN++ N +  I +KT
Sbjct: 251 FTPKEIQVASLIKEGKRTKEIAQILGISKSAIDLHRNSIRNKLGLINKKT 300


>gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 231

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ +
Sbjct: 168 IDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227

Query: 244 NIV 246
            + 
Sbjct: 228 GLA 230


>gi|42523606|ref|NP_968986.1| two-component response regulator [Bdellovibrio bacteriovorus HD100]
 gi|39575812|emb|CAE79979.1| two-component response regulator [Bdellovibrio bacteriovorus HD100]
          Length = 204

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            LLA  +   F S ++    D      LT RE+E    I+ G+++ EIA +LG S  T+ 
Sbjct: 117 ALLALKRGERFLSANIREAIDKAGVEVLTKREIEVARMIATGRSNKEIAEVLGCSDQTIK 176

Query: 219 NYIASIMRKTATKT 232
            +  +IM K    T
Sbjct: 177 THKTNIMTKLGVNT 190


>gi|326624070|gb|EGE30415.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 198

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 137 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 187


>gi|313673833|ref|YP_004051944.1| two component transcriptional regulator, luxr family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940589|gb|ADR19781.1| two component transcriptional regulator, LuxR family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 209

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT  E      ++EGKT  EIA   G S  TV N   +IM+K   KT    I  A++ 
Sbjct: 145 FGLTNAEKIVFKMLAEGKTPKEIAYETGKSIKTVENQRGAIMKKLNFKTEVELIKLALKL 204

Query: 244 NIV 246
           NI+
Sbjct: 205 NII 207


>gi|290963094|ref|YP_003494276.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260652620|emb|CBG75753.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 37/70 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D H  +   LT RE + L  ++EG ++ EI  ++ +S  TV +++++I+ K     R  A
Sbjct: 141 DEHVARFGLLTERERQVLVLVAEGLSNAEIGTVVHLSEGTVKDHVSAILGKLGVAGRVRA 200

Query: 237 IAYAVRNNIV 246
              A R  ++
Sbjct: 201 ALLAQRAGLL 210


>gi|255532850|ref|YP_003093222.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345834|gb|ACU05160.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 206

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 36/75 (48%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           Y    F S  +       +T RE E L  I+EG T+ EIA  L IS  TVN +  S++ K
Sbjct: 128 YSQEAFSSLRIPAPDQLLITRREKEVLLLIAEGLTNAEIAEKLFISIPTVNTHRKSLIEK 187

Query: 228 TATKTRSGAIAYAVR 242
              K  +  I  A++
Sbjct: 188 FNVKNTAMLIGKAIK 202


>gi|255533128|ref|YP_003093500.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255346112|gb|ACU05438.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 263

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W++EG +S  IA  + +S +T+ ++  ++  KT T   +  I++A++ +I
Sbjct: 203 FSKREKEVLLWMAEGLSSKMIAEKMFVSEHTIISHRRNMQDKTNTPNATALISFALKKSI 262

Query: 246 V 246
           +
Sbjct: 263 I 263


>gi|88196315|ref|YP_501137.1| hypothetical protein SAOUHSC_02675 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|269204023|ref|YP_003283292.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus ED98]
 gi|87203873|gb|ABD31683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|262076313|gb|ACY12286.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus ED98]
 gi|269941974|emb|CBI50386.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           TW20]
 gi|302752262|gb|ADL66439.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|312830737|emb|CBX35579.1| transcriptional regulatory protein degU (Protease production
           enhancerprotein) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|329315077|gb|AEB89490.1| Oxygen regulatory protein nreC [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 200

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K++   + YA++  +
Sbjct: 138 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKL 197

Query: 246 V 246
           +
Sbjct: 198 L 198


>gi|82699111|ref|YP_413685.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|163842464|ref|YP_001626868.1| monoamine regulon transcriptional regulator [Brucella suis ATCC
           23445]
 gi|189023446|ref|YP_001934214.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225851728|ref|YP_002731961.1| monoamine regulon transcriptional regulator [Brucella melitensis
           ATCC 23457]
 gi|254690497|ref|ZP_05153751.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|254696618|ref|ZP_05158446.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254701000|ref|ZP_05162828.1| Monoamine regulon transcriptional regulator [Brucella suis bv. 5
           str. 513]
 gi|254709343|ref|ZP_05171154.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|254731531|ref|ZP_05190109.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|256030866|ref|ZP_05444480.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256045986|ref|ZP_05448858.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256112698|ref|ZP_05453619.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           bv. 3 str. Ether]
 gi|256264760|ref|ZP_05467292.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260169768|ref|ZP_05756579.1| Monoamine regulon transcriptional regulator [Brucella sp. F5/99]
 gi|260546468|ref|ZP_05822208.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260563267|ref|ZP_05833753.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|261759311|ref|ZP_06003020.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|294851595|ref|ZP_06792268.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL
           07-0026]
 gi|82615212|emb|CAJ10153.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           biovar Abortus 2308]
 gi|163673187|gb|ABY37298.1| Monoamine regulon transcriptional regulator [Brucella suis ATCC
           23445]
 gi|189019018|gb|ACD71740.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225640093|gb|ACO00007.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           ATCC 23457]
 gi|260096575|gb|EEW80451.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260153283|gb|EEW88375.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|261739295|gb|EEY27291.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|263095169|gb|EEZ18838.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|294820184|gb|EFG37183.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL
           07-0026]
 gi|326408219|gb|ADZ65284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326537934|gb|ADZ86149.1| monoamine regulon transcriptional regulator [Brucella melitensis
           M5-90]
          Length = 245

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228


>gi|327479056|gb|AEA82366.1| DNA-binding response regulator CorR [Pseudomonas stutzeri DSM 4166]
          Length = 194

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+   +G ++ EIA  L +S +T+ ++I +++RK     R+ A AY +R+++
Sbjct: 128 LTLREREILSLAGKGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNRAEA-AYLLRSHL 186


>gi|315608389|ref|ZP_07883377.1| transcriptional regulator [Prevotella buccae ATCC 33574]
 gi|315249849|gb|EFU29850.1| transcriptional regulator [Prevotella buccae ATCC 33574]
          Length = 318

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  + +G T+ EIA  L IS NTV  +  +I +K    + +G   YA+ NN+
Sbjct: 251 LSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIAKKLQIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|258654718|ref|YP_003203874.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258557943|gb|ACV80885.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 207

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G+++ EIA  L I+  TV +++  I  K    +R+ A++ A    I
Sbjct: 145 LSPREIEVLERVAAGRSNGEIARELVITEQTVKSHLVHIYTKLGVSSRTAAVSLARERGI 204

Query: 246 V 246
           +
Sbjct: 205 L 205


>gi|254488074|ref|ZP_05101279.1| two component response regulator [Roseobacter sp. GAI101]
 gi|214044943|gb|EEB85581.1| two component response regulator [Roseobacter sp. GAI101]
          Length = 218

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 182 KDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           KD E   LT RE   L  +++G+++ E+A+ L IS  TV  +  +I RK    + +G   
Sbjct: 144 KDDERESLTEREQTILLQLAQGQSNKEVALTLDISVRTVETHRKNIKRKLGISSTAGLTR 203

Query: 239 YAVRNNIV 246
           YA+ + ++
Sbjct: 204 YAMEHGVL 211


>gi|254390344|ref|ZP_05005561.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704048|gb|EDY49860.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 221

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A A+  R
Sbjct: 157 LTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAFVAR 213


>gi|254418089|ref|ZP_05031813.1| HTH DNA binding domain family [Brevundimonas sp. BAL3]
 gi|196184266|gb|EDX79242.1| HTH DNA binding domain family [Brevundimonas sp. BAL3]
          Length = 147

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE+EC+       ++ EIA +LGI+ +TV NY+ S   K  T  R  A
Sbjct: 4   LTRREIECVQLAGLRLSNQEIADVLGITPSTVANYLQSANAKLGTSHRRAA 54


>gi|171910618|ref|ZP_02926088.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 213

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E LT +++G    EIA  LGIS +TV  ++  I  K   +TR+ A+
Sbjct: 155 LTPREFEILTQLAKGLQYKEIADQLGISTSTVRGHLHVIYGKLHVQTRTEAV 206


>gi|320537074|ref|ZP_08037052.1| transcriptional regulator, LuxR family [Treponema phagedenis F0421]
 gi|320146077|gb|EFW37715.1| transcriptional regulator, LuxR family [Treponema phagedenis F0421]
          Length = 386

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           K+F L+ RE   L  I +G T  EIA  L +   T+ NY + + +K     R  A
Sbjct: 315 KNFNLSKREYIILELICQGSTGKEIAYKLNLKEQTIKNYTSRLYKKLGVTGRVEA 369


>gi|320538833|ref|ZP_08038509.1| putative AHL-dependent transcriptional regulator [Serratia
           symbiotica str. Tucson]
 gi|320030993|gb|EFW12996.1| putative AHL-dependent transcriptional regulator [Serratia
           symbiotica str. Tucson]
          Length = 82

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           RE E L W S GKT  EIA I GIS +TV  ++ +I+ K
Sbjct: 41  RENEVLYWSSMGKTYGEIAAIAGISVSTVKFHMGNIVSK 79


>gi|302327479|gb|ADL26680.1| transcriptional regulator, LuxR family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 450

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT R+ E L+ + +G T+ EI   LGIS NTV  ++A+I +      R  A++     N
Sbjct: 9   ELTPRQKEILSLLRKGLTNAEICRTLGISANTVKVHLANIYKILEVTNRIEAVSTQEEPN 68

Query: 245 I 245
           +
Sbjct: 69  V 69


>gi|288962972|ref|YP_003453266.1| two-component response regulator [Azospirillum sp. B510]
 gi|288915238|dbj|BAI76722.1| two-component response regulator [Azospirillum sp. B510]
          Length = 216

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +++  L  I+EGK + +IA  + ++  TV  ++ +I+RK    TR+ A   A
Sbjct: 148 LTPQQLRVLAGIAEGKLNKQIAYEMNVAETTVKAHVTTILRKLGVLTRTQAAVLA 202


>gi|284041993|ref|YP_003392333.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946214|gb|ADB48958.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 122

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +   LT RE E L WI+ G+   + A ++GIS  TV  ++ ++  K   +T
Sbjct: 41  EGLGLTPREAEALRWIALGRRGPDAARLMGISPRTVEKHLQNVYAKLGVRT 91


>gi|262164491|ref|ZP_06032229.1| transcriptional regulator VpsT [Vibrio mimicus VM223]
 gi|262026871|gb|EEY45538.1| transcriptional regulator VpsT [Vibrio mimicus VM223]
          Length = 224

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NN
Sbjct: 158 KLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216

Query: 245 I 245
           I
Sbjct: 217 I 217


>gi|254718410|ref|ZP_05180221.1| Monoamine regulon transcriptional regulator [Brucella sp. 83/13]
 gi|306840178|ref|ZP_07472961.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653]
 gi|306404743|gb|EFM61039.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653]
          Length = 245

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 180 LTAREVEVVHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228


>gi|271965569|ref|YP_003339765.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508744|gb|ACZ87022.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 216

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  I++G+T+ EIA  L +S  TV  ++  I+ K   + R  A+ +A
Sbjct: 153 LTDREREVLRHIAQGETNAEIAGCLFLSEGTVKTHVGRILAKLQLRDRVQAVIWA 207


>gi|218672647|ref|ZP_03522316.1| transcriptional regulator, LuxR family protein [Rhizobium etli
           GR56]
          Length = 265

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            LT RE ECL   +EG ++ EI+ I+G S  TV  ++ +  +K   + R+ A+  A 
Sbjct: 198 HLTERERECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRAT 254


>gi|163737655|ref|ZP_02145072.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis BS107]
 gi|163740771|ref|ZP_02148164.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161385762|gb|EDQ10138.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161389181|gb|EDQ13533.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis BS107]
          Length = 210

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE E  + + EGKTS EIA  LG+S  TV  + A +++K
Sbjct: 142 LTRREREVYSLLCEGKTSKEIARSLGLSYRTVEVHRARLLKK 183


>gi|221069285|ref|ZP_03545390.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220714308|gb|EED69676.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 212

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I+ G+   EIA  L +S  TV+ Y A ++ K    + +   AYA++N +
Sbjct: 149 LSEREMQTLLKIASGQRQTEIAQELMLSPKTVSVYRARVLEKLGMGSNAELTAYAIKNGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|27382418|ref|NP_773947.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355589|dbj|BAC52572.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 225

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   +  ++EG ++  I+ IL +S  T   + A+ MRK    + +G + YAVR  +
Sbjct: 163 LTPREQLVVKLVAEGYSNKGISAILNLSVKTTEAHRAAAMRKLDVNSTAGLVRYAVRAQL 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|89070144|ref|ZP_01157473.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044261|gb|EAR50407.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 211

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  +++G+++ E+A++L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 146 LTTREQTILLRLAQGRSNKEVALLLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 205

Query: 246 V 246
           +
Sbjct: 206 L 206


>gi|325000569|ref|ZP_08121681.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Pseudonocardia
           sp. P1]
          Length = 101

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  + EG T+ +IA  L +S  TV N++  ++RK     R   +  A+ + +
Sbjct: 41  LSPRESEVLRLVVEGLTAKQIAGRLVLSPRTVENHVQRLLRKFGVPGRGALVRRAIEHGL 100


>gi|282863714|ref|ZP_06272772.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561415|gb|EFB66959.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 222

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    
Sbjct: 158 DLTERETEVLVLIAQGLSNQEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|256158896|ref|ZP_05456746.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|256254270|ref|ZP_05459806.1| Monoamine regulon transcriptional regulator [Brucella ceti B1/94]
          Length = 245

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228


>gi|254485770|ref|ZP_05098975.1| two component transcriptional regulator, LuxR family [Roseobacter
           sp. GAI101]
 gi|214042639|gb|EEB83277.1| two component transcriptional regulator, LuxR family [Roseobacter
           sp. GAI101]
          Length = 204

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +L+ RE++ L  ++EGK + EIA  L IS  TV  ++ ++ RK     R+ A
Sbjct: 143 KLSSRELQVLKGLTEGKANKEIARDLDISEPTVKLHMKTLYRKVGAANRTQA 194


>gi|253987735|ref|YP_003039091.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638613|emb|CAR67232.1| similar to probable transcription regulator sdia of escherichia
           coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779185|emb|CAQ82345.1| similar to probable transcription regulator SdiA of Escherichia
           coli [Photorhabdus asymbiotica]
          Length = 242

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 36/58 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +   + RE+E L + ++G  S EIA  + ++++TV+ ++ +I++K   + +  AIA A
Sbjct: 179 EISFSHRELEVLRYTADGMISSEIASTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKA 236


>gi|254442066|ref|ZP_05055542.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256374|gb|EDY80682.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 220

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE + L W+S G ++ EIA  L ++  TV N++++++ K     R+ A   A
Sbjct: 160 LSQREEQVLVWLSRGCSNKEIASHLDLAEGTVKNHVSNVLGKLGVLDRTQAALMA 214


>gi|159037162|ref|YP_001536415.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157915997|gb|ABV97424.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 212

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + R+ A   A R
Sbjct: 150 LTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSMLAKLGLERRTQAAVLATR 206


>gi|325833702|ref|ZP_08166117.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|325485242|gb|EGC87712.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 462

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L +++EG +   I+ +L IS NTV  +I +I RK    +R
Sbjct: 406 LTAREQEILAYLAEGHSGAYISDVLFISPNTVRTHIHNIYRKLDVSSR 453


>gi|298247093|ref|ZP_06970898.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297549752|gb|EFH83618.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 202

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L  RE+E L  ++EG+++ EIA  L ++++T+  Y+  I  K    +R+ AI  A
Sbjct: 141 LNKRELEVLRLLAEGRSNQEIADTLIVAKSTIKWYLKQIYSKLNAHSRTQAIVCA 195


>gi|298251835|ref|ZP_06975638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546427|gb|EFH80295.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1065

 Score = 37.7 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE E L  ++ G ++ EIA  L IS +TV  ++  ++ K     R+ AIA A
Sbjct: 1005 LTRREQEVLCLLAAGASNQEIAQTLVISLDTVKKHVGRLLDKLGATNRTQAIAQA 1059


>gi|296104780|ref|YP_003614926.1| two-component system, NarL family, response regulator EvgA
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059239|gb|ADF63977.1| two-component system, NarL family, response regulator EvgA
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 209

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           + RE+  L ++ +GK++ EIA  L +S  T++ Y A +M+K+ 
Sbjct: 149 SDREIAVLNYLKQGKSNKEIADRLALSNKTISTYKARMMKKSG 191


>gi|295394380|ref|ZP_06804604.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972732|gb|EFG48583.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 221

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D H  K   LT RE E    ++ GK++ EIA  L ++  TV  +++ I+ K   + R  A
Sbjct: 152 DEHAQKLERLTAREREVFELVARGKSNAEIAGELFMAGPTVKTHVSHILTKLEVRDRIHA 211

Query: 237 IAYAVRNNIV 246
           + +A    +V
Sbjct: 212 VIFAYEAGVV 221


>gi|240142370|ref|YP_002966880.1| LuxR type transcriptional regulator [Methylobacterium extorquens
           AM1]
 gi|240012314|gb|ACS43539.1| LuxR type transcriptional regulator [Methylobacterium extorquens
           AM1]
          Length = 242

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LTW + GK+S + A I+ I+  T   +  +   K     R+ A+  A+++  
Sbjct: 180 LTQREQEVLTWAALGKSSRDTAEIMQITERTALAHAVNATHKLGAANRTQAVVRAMQSKF 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|218258057|ref|ZP_03474484.1| hypothetical protein PRABACTJOHN_00137 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225776|gb|EEC98426.1| hypothetical protein PRABACTJOHN_00137 [Parabacteroides johnsonii
           DSM 18315]
          Length = 202

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N +
Sbjct: 135 LSAREKEIVVCVVKGMTNREIADRLFLSTHTVVTHRRNIARKLQVHSASGLTVYAIVNKL 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|254472864|ref|ZP_05086263.1| hypothetical protein PJE062_3930 [Pseudovibrio sp. JE062]
 gi|211958328|gb|EEA93529.1| hypothetical protein PJE062_3930 [Pseudovibrio sp. JE062]
          Length = 381

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 28/42 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT +E E +  ++ G ++ + A +LGIS NT  N+IA++ R+
Sbjct: 316 LTPKETEVVKALTNGASTRDAADLLGISYNTARNHIANVSRR 357


>gi|85858634|ref|YP_460836.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85721725|gb|ABC76668.1| response regulator with a HTH DNA-binding domain [Syntrophus
           aciditrophicus SB]
          Length = 210

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  ++ GKT  EIA  L +S  T++ Y + I+ K   K  +    YAV+N++
Sbjct: 149 LSDREYQVMLMLASGKTVTEIAEELCLSVKTISTYRSRILEKMNMKKNAELTLYAVQNHL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|78062243|ref|YP_372151.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383]
 gi|77970128|gb|ABB11507.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. 383]
          Length = 913

 Score = 37.7 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 156 RDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           RDRL  I     G  A YQ +   +      +D  L+ RE + +  I+ G+++ EIA  L
Sbjct: 814 RDRLAYIERLLDGCRAQYQQDAQPARAAQ--RDM-LSVRERDIVELIAHGQSNKEIARTL 870

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GI+  TV ++I S+  K     R+ A+A A
Sbjct: 871 GIAPETVKSHIKSLFMKLEVDKRARAVAVA 900


>gi|312889298|ref|ZP_07748852.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311298175|gb|EFQ75290.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 186

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F+ T RE++    +++G T  EIA  L IS +TV+++   I +K+   +R
Sbjct: 124 FQFTAREIDVCLLLAKGMTYTEIAETLHISNSTVDSHTQKIYKKSGVNSR 173


>gi|261218196|ref|ZP_05932477.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320956|ref|ZP_05960153.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923285|gb|EEX89853.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293646|gb|EEX97142.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 254

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 237


>gi|302546067|ref|ZP_07298409.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302463685|gb|EFL26778.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G  +DEIA  L +S  TV  ++   M K   + R+  +  A    +
Sbjct: 161 LTGREREVLVQVAGGHPNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYETGL 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|254489762|ref|ZP_05102957.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010]
 gi|224464847|gb|EEF81101.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010]
          Length = 212

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           D  LT RE E L  ++EG  +  IA  LGIS  TV  +I +I+RK    +R
Sbjct: 151 DAGLTDRENEILDCLAEGMNNKNIARKLGISDTTVKVHIKNILRKLNLTSR 201


>gi|170695914|ref|ZP_02887054.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170139212|gb|EDT07400.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 181

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 26/46 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    +  GKTS +I   L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRALAISPRTVDVYRARLMRKYDT 168


>gi|225155470|ref|ZP_03723961.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224803771|gb|EEG22003.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 225

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG  + ++A  LGIS  TV  +   +M K      +G   +A+   +
Sbjct: 156 LTTREAEVLQLVAEGAANKQVAAELGISIKTVEKHRQQLMNKLDIHDTAGLTRHAIATGV 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|119964172|ref|YP_949850.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119951031|gb|ABM09942.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 218

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GREV+ L  ++ G ++  +A  L IS  TV  ++  I  K     R+ AIA A +  I
Sbjct: 155 LSGREVQLLELLATGMSNRAMAKQLFISEATVKTHLVHIYSKLGVDNRTAAIAVATQRRI 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|108801402|ref|YP_641599.1| ATP-dependent transcription regulator LuxR [Mycobacterium sp. MCS]
 gi|119870555|ref|YP_940507.1| putative GAF sensor protein [Mycobacterium sp. KMS]
 gi|108771821|gb|ABG10543.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Mycobacterium sp. MCS]
 gi|119696644|gb|ABL93717.1| putative GAF sensor protein [Mycobacterium sp. KMS]
          Length = 285

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+GRE++ LT ++ G T+ E A  L +   TV +Y+ S   K  T+TR  +++ A
Sbjct: 224 LSGRELDVLTQVAMGCTNAEAAQRLSLRPETVKSYLRSASAKLGTRTRHESVSRA 278


>gi|108760284|ref|YP_633423.1| LuxR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108464164|gb|ABF89349.1| transcriptional regulator, LuxR family [Myxococcus xanthus DK 1622]
          Length = 292

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L  RE + L  + +G    +IA  LGISR TVN Y  ++ R+   ++R+  IA
Sbjct: 200 LAPRERQTLELLLQGLGDKQIAARLGISRFTVNQYTKTLYRRFGVQSRAALIA 252


>gi|300698182|ref|YP_003748843.1| LuxR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074906|emb|CBJ54475.1| putative transcription regulator protein LuxR [Ralstonia
           solanacearum CFBP2957]
          Length = 218

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           F LT RE +    ++ G     IA  LGISR+TV  ++  + RKT T ++
Sbjct: 155 FHLTRREADVADLLARGADPALIASTLGISRDTVRTHLKHVYRKTNTHSQ 204


>gi|212636693|ref|YP_002313218.1| regulatory protein LuxR:response regulator receiver [Shewanella
           piezotolerans WP3]
 gi|212558177|gb|ACJ30631.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella
           piezotolerans WP3]
          Length = 209

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE+E L  ++EG+++  +A  L IS  TV  ++ +++RK   K+R+
Sbjct: 152 LTPRELEILQHLAEGQSNRVVAEQLHISEGTVKVHVKNLLRKANAKSRT 200


>gi|167622780|ref|YP_001673074.1| LuxR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352802|gb|ABZ75415.1| transcriptional regulator, LuxR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 317

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE + +  I +G T  +IA  L +S +TV+N++  I  K    TRS  ++ A
Sbjct: 257 ELTARERQIVAEICKGGTFKQIARKLALSPSTVSNHLYRIYAKLGINTRSELVSIA 312


>gi|159044888|ref|YP_001533682.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157912648|gb|ABV94081.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
          Length = 220

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  ++ GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 153 LTSREQTILLQLASGKSNKEVAATLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|114706302|ref|ZP_01439204.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506]
 gi|114538163|gb|EAU41285.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506]
          Length = 205

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE E L+ ++ G T+ +IA   GIS+NTV  Y+ ++  K   + R+ A+A
Sbjct: 145 KLTVRERELLSMLALGWTNVQIAARTGISQNTVKYYLKNLYEKLDVQNRAMAVA 198


>gi|94313908|ref|YP_587117.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357760|gb|ABF11848.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 237

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE E L  ++ G T  EIA  L IS NTV  +I +I  K A  +RS A+
Sbjct: 174 LSARESEILDLVARGYTYAEIARHLSISVNTVAAHIRNIYGKLAVNSRSEAV 225


>gi|330959979|gb|EGH60239.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 264

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+V+    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 193 KLSPRQVDVAKLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 249


>gi|307332571|ref|ZP_07611620.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306881779|gb|EFN12916.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 231

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G+  ELT RE E L  +++G ++ EIA  L ++ +TV  +++ I+ K   + R+ A  +
Sbjct: 161 QGRLAELTERENEVLVLVAQGCSNAEIAERLIVAESTVKTHVSRILVKLGLRDRTQAAVF 220

Query: 240 AVRNNIV 246
           A    +V
Sbjct: 221 AYEARLV 227


>gi|258622087|ref|ZP_05717113.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
 gi|258585411|gb|EEW10134.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
          Length = 282

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D +LT RE E L  +  GK    IA ++GIS  TV  Y A +  K    ++   I  A
Sbjct: 196 GADLKLTARESEVLFLLLYGKKPQHIARVMGISIKTVEGYEAKLRSKFGALSKDQLIDLA 255

Query: 241 V 241
           +
Sbjct: 256 L 256


>gi|284032031|ref|YP_003381962.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283811324|gb|ADB33163.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 225

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LTGRE E L  +  G+T+  IA +L IS  TV  ++  I  K   ++R+ A+
Sbjct: 162 LTGREQEVLKLLGAGRTNAGIAGVLVISEATVRTHVYRIQTKLGLQSRTEAV 213


>gi|259907792|ref|YP_002648148.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae
           Ep1/96]
 gi|224963414|emb|CAX54902.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae
           Ep1/96]
 gi|283477661|emb|CAY73577.1| Nitrate/nitrite response regulator protein homolog [Erwinia
           pyrifoliae DSM 12163]
 gi|310768295|gb|ADP13245.1| Nitrate/nitrite response regulator protein NarP [Erwinia sp.
           Ejp617]
          Length = 209

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE E L  ++ G T+ ++A  L IS  TV  +I +++RK   +TR  A
Sbjct: 150 LTVREQEVLKEVASGLTNKQVAENLAISEQTVKVHIRNVLRKLNVRTRVAA 200


>gi|224539069|ref|ZP_03679608.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519314|gb|EEF88419.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 250

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE E L  I++GK S +IA  L IS NTVN +  +I+ K
Sbjct: 190 LSDREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEK 231


>gi|157144856|ref|YP_001452175.1| transcriptional regulator NarP [Citrobacter koseri ATCC BAA-895]
 gi|157082061|gb|ABV11739.1| hypothetical protein CKO_00584 [Citrobacter koseri ATCC BAA-895]
          Length = 215

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|126437385|ref|YP_001073076.1| putative GAF sensor protein [Mycobacterium sp. JLS]
 gi|126237185|gb|ABO00586.1| putative GAF sensor protein [Mycobacterium sp. JLS]
          Length = 285

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+GRE++ LT ++ G T+ E A  L +   TV +Y+ S   K  T+TR  +++ A
Sbjct: 224 LSGRELDVLTQVAMGCTNAEAAQRLSLRPETVKSYLRSASAKLGTRTRHESVSRA 278


>gi|104782132|ref|YP_608630.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95111119|emb|CAK15839.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 204

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 161 EIG--LLAAYQANMFKSYD----VHW-GKDFEL---TGREVECLTWISEGKTSDEIAVIL 210
           EIG  LLA  +  +   Y     +H  G D EL   T R+ + L  I++GKT+ EIA  L
Sbjct: 112 EIGAALLAVREGEVVVRYAPSGLLHQEGADSELEQLTHRQHDVLRLIAQGKTNKEIAREL 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGA 236
            IS  TV  +++S+++     TR+ A
Sbjct: 172 DISPFTVRIHVSSLLKTLNVPTRTAA 197


>gi|222109041|ref|YP_002551307.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
 gi|4883686|gb|AAD31600.1| TraR [Agrobacterium radiobacter K84]
 gi|221727963|gb|ACM31013.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
          Length = 234

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ GKT +EIA + G+  N+V   +   M++   ++++   A A+R  +
Sbjct: 174 LDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDIRSKAHLTALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|317126429|ref|YP_004100541.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590517|gb|ADU49814.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           E   L  I+EG T+ ++   L ++  TV NY++S++ K   +TR+ A  YA 
Sbjct: 163 ERRILDLIAEGLTNRQVGDRLHLAEKTVKNYVSSVLSKMGMETRTQAAVYAA 214


>gi|312196246|ref|YP_004016307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227582|gb|ADP80437.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 230

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L ++++G ++ E+A    +S  TV  ++A I+ K   + R+ A+  A    +
Sbjct: 161 LTPRELEVLEFLAQGLSNAELAARFQLSEATVKTHVARILAKLQVRDRAQAVIVAYETGL 220

Query: 246 V 246
           +
Sbjct: 221 I 221


>gi|302548323|ref|ZP_07300665.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302465941|gb|EFL29034.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 226

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E +   +EGK++ EIA IL +S  TV  +I   M K   + R+  +  A +  
Sbjct: 158 ELTDREREVMGLAAEGKSNTEIAEILVLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTG 217

Query: 245 IV 246
           + 
Sbjct: 218 LA 219


>gi|302529224|ref|ZP_07281566.1| two component system response regulator [Streptomyces sp. AA4]
 gi|302438119|gb|EFL09935.1| two component system response regulator [Streptomyces sp. AA4]
          Length = 213

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E    + +G ++ EIA  LG+S  TV  ++  IM KT    R+
Sbjct: 153 LTPREREVAVAVGQGSSNAEIARALGLSEATVKVHLGRIMAKTEAANRT 201


>gi|229178244|ref|ZP_04305615.1| Response regulator [Bacillus cereus 172560W]
 gi|228605374|gb|EEK62824.1| Response regulator [Bacillus cereus 172560W]
          Length = 212

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   ++N+ ++ +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVI-----LDKIKSNLMENKEEECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|332526411|ref|ZP_08402533.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332110543|gb|EGJ10866.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 211

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K      S    YA+RN 
Sbjct: 148 KLSDRELQTLVMIASGKRLADIAEELMLSPKTVSVYRARVLEKLQLANNSELTVYAIRNG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|301065076|ref|ZP_07205418.1| transcriptional regulator, LuxR family [delta proteobacterium
           NaphS2]
 gi|300440797|gb|EFK05220.1| transcriptional regulator, LuxR family [delta proteobacterium
           NaphS2]
          Length = 315

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           F LT RE+E  + + EGK++ EIA +L +S  T++ +  +I  K   K++ 
Sbjct: 254 FNLTPREIEIASLVKEGKSTKEIAQLLALSPRTIDLHRLNIREKLGLKSKK 304


>gi|293374136|ref|ZP_06620470.1| transcriptional regulator, LuxR family [Turicibacter sanguinis
           PC909]
 gi|325837421|ref|ZP_08166403.1| spore germination protein GerE [Turicibacter sp. HGF1]
 gi|292647239|gb|EFF65215.1| transcriptional regulator, LuxR family [Turicibacter sanguinis
           PC909]
 gi|325490953|gb|EGC93251.1| spore germination protein GerE [Turicibacter sp. HGF1]
          Length = 70

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E    +    T+ EIA  L IS  TV N+I++++ K   K RS AI
Sbjct: 8   LTKREQEIFNLLVRNMTTSEIAEELKISEKTVRNHISNVILKLNVKGRSQAI 59


>gi|260756053|ref|ZP_05868401.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759277|ref|ZP_05871625.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760999|ref|ZP_05873342.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|261316853|ref|ZP_05956050.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261751522|ref|ZP_05995231.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|265987924|ref|ZP_06100481.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265992398|ref|ZP_06104955.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994141|ref|ZP_06106698.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|260669595|gb|EEX56535.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671431|gb|EEX58252.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676161|gb|EEX62982.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|261296076|gb|EEX99572.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261741275|gb|EEY29201.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262765122|gb|EEZ11043.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263003464|gb|EEZ15757.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264660121|gb|EEZ30382.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
          Length = 254

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 237


>gi|225626731|ref|ZP_03784770.1| Monoamine regulon transcriptional regulator [Brucella ceti str.
           Cudo]
 gi|237814663|ref|ZP_04593661.1| Monoamine regulon transcriptional regulator [Brucella abortus str.
           2308 A]
 gi|225618388|gb|EEH15431.1| Monoamine regulon transcriptional regulator [Brucella ceti str.
           Cudo]
 gi|237789500|gb|EEP63710.1| Monoamine regulon transcriptional regulator [Brucella abortus str.
           2308 A]
          Length = 257

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 192 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 240


>gi|218679157|ref|ZP_03527054.1| LuxR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 265

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE ECL   +EG ++ EI+ I+G S  TV  ++ +  +K   + R+ A+  A 
Sbjct: 192 LTERERECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRAT 247


>gi|295839362|ref|ZP_06826295.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197699050|gb|EDY45983.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 226

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A    +
Sbjct: 161 LTGREREVLVQVAAGLSNDEIAERLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGL 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|237507456|ref|ZP_04520171.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           MSHR346]
 gi|254190212|ref|ZP_04896721.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254193496|ref|ZP_04899930.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           S13]
 gi|254265145|ref|ZP_04956010.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710a]
 gi|254300471|ref|ZP_04967917.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           406e]
 gi|157810179|gb|EDO87349.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           406e]
 gi|157937889|gb|EDO93559.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169650249|gb|EDS82942.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           S13]
 gi|234999661|gb|EEP49085.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           MSHR346]
 gi|254216147|gb|EET05532.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710a]
          Length = 261

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   +D  ELT RE + L +++  KT+ +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 149 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 208

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 209 NELIDLAA 216


>gi|15614776|ref|NP_243079.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174832|dbj|BAB05932.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 217

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +++G+++ EIA  L IS  TV  ++++I  K     R+ A  +A++  
Sbjct: 151 DLTNREKDVLRELAKGQSNKEIASELHISEKTVKTHVSNIFWKLDVHDRTQAALFAIKYG 210

Query: 245 I 245
           I
Sbjct: 211 I 211


>gi|323137329|ref|ZP_08072407.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
 gi|322397316|gb|EFX99839.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
          Length = 220

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE   L  ++ GK + EIA  +G++  TV N++++I+ K   ++R+
Sbjct: 162 LTDREKAVLAHVAAGKGNREIAREMGLAEGTVKNHVSTILAKLHLRSRT 210


>gi|284043113|ref|YP_003393453.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283947334|gb|ADB50078.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 227

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE E L  I+ G    E+A+ LGIS  TV  ++++++RK     R
Sbjct: 160 QLTQREREVLRHIARGYLYKEVALRLGISAKTVEAHVSAVLRKLQLSNR 208


>gi|259418337|ref|ZP_05742255.1| nitrate/nitrite regulatory protein NarP [Silicibacter sp.
           TrichCH4B]
 gi|259345732|gb|EEW57576.1| nitrate/nitrite regulatory protein NarP [Silicibacter sp.
           TrichCH4B]
          Length = 224

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +  G  + EIA +L +   TV + + SIM+KT    R+     AV+  +
Sbjct: 154 LTQRETQVLGQLLRGAPNKEIARVLSVPLTTVKSDVKSIMQKTGAANRTALAVSAVQAGL 213

Query: 246 V 246
           +
Sbjct: 214 M 214


>gi|317054006|ref|YP_004118031.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
 gi|316952001|gb|ADU71475.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 239

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 23/219 (10%)

Query: 31  DLLARMIPL--DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           D L  MIP+   C   W ++  + + +V  +   L   +L    K+  ++  + P     
Sbjct: 19  DFLKIMIPIWNRCDEPWGVKDES-SRFVYVNDSFLKLLNLPLNYKIAGMLHENMP----- 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
               SE  K+    Q   +L       +    T P G   +  S  FD        + LF
Sbjct: 73  ----SETAKFARQFQENDKLVASTLKRVTSIETHPFGESQKISSYLFDK-------IPLF 121

Query: 149 PKGRI----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            K       +   R +EI  +  +  N        +     LT RE + +     G+ + 
Sbjct: 122 NKDNEYIGNMFHGRKFEILDINLFYTNKLSGAVTFYSPSALLTDREWDVVFLKLRGENNK 181

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EI+ IL ISR TV   I+SI  K    + S    + +RN
Sbjct: 182 EISRILKISRRTVEKIISSIYDKCEVSSWSALRGFLIRN 220


>gi|254705374|ref|ZP_05167202.1| LuxR family transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 135

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 70  LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 118


>gi|241766322|ref|ZP_04764211.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241363555|gb|EER58994.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 210

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    +++G+T+ +IA  L +S  TV+ Y   +M K +  + S    YA++N 
Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKALSLSVKTVSTYRTRLMEKMSLSSNSDLTYYALKNR 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|271968550|ref|YP_003342746.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511725|gb|ACZ90003.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 201

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L   ++G  S+EIA  L +S  TV N+++ IM KT  + R  A+  A
Sbjct: 141 LTRRELDVLRLAAQGARSNEIADQLFLSVGTVRNHMSRIMCKTHARNRLDAVRIA 195


>gi|229174002|ref|ZP_04301538.1| Response regulator [Bacillus cereus MM3]
 gi|228609334|gb|EEK66620.1| Response regulator [Bacillus cereus MM3]
          Length = 566

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R  AI  A   
Sbjct: 504 YGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNREEAIKKARTE 563

Query: 244 NIV 246
           NI+
Sbjct: 564 NIL 566


>gi|224477373|ref|YP_002634979.1| response regulator of the two-component regulatory [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|81321267|sp|Q7WZY4|NREC_STACT RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|32330234|gb|AAP79640.1| NreC [Staphylococcus carnosus]
 gi|222421980|emb|CAL28794.1| response regulator of the two-component regulatory [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 217

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM+K   K++   + YA++  +
Sbjct: 155 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALKKKL 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|317489390|ref|ZP_07947902.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325832371|ref|ZP_08165345.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|316911497|gb|EFV33094.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486007|gb|EGC88462.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 488

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A  Q +  ++   H  +   LT RE E L  + +G+T+  I+  L +S NTV  +I SI 
Sbjct: 406 AEQQGDALEARCAHVAEAHGLTPRESEILVHLGQGRTARAISEKLVVSENTVKYHIKSIY 465

Query: 226 RKTATKTR 233
           +K    +R
Sbjct: 466 QKLDVHSR 473


>gi|256379381|ref|YP_003103041.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923684|gb|ACU39195.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 213

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ RE E L  I++G  + EIA  L  S+ TV + +  I  +   + R+ A+AYA+R  +
Sbjct: 153 MSNRETEVLRLIADGYETREIAERLCYSQRTVKSILHDITNRFGLRNRAHAVAYALREGL 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|146308469|ref|YP_001188934.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp]
 gi|145576670|gb|ABP86202.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp]
          Length = 221

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ELT RE + L  I  G ++ +IA  LGIS  TV  Y+ S++RK    +R
Sbjct: 19  ELTEREGQTLALIGAGLSNKQIARELGISDGTVKIYVRSLLRKFRLSSR 67


>gi|53722159|ref|YP_111144.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76818644|ref|YP_335251.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|52212573|emb|CAH38599.1| putative LuxR family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76583117|gb|ABA52591.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710b]
          Length = 267

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   +D  ELT RE + L +++  KT+ +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 155 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 214

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 215 NELIDLAA 222


>gi|220924070|ref|YP_002499372.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948677|gb|ACL59069.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 251

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ELT ++V  L  I +GK + +IA  LG+  +TV  +++ I+RK    +R+
Sbjct: 181 ELTPQQVRVLLMIRQGKLNKQIAHELGVGDSTVKAHVSEILRKLGVISRT 230


>gi|118619050|ref|YP_907382.1| two component transcriptional regulatory protein [Mycobacterium
           ulcerans Agy99]
 gi|118571160|gb|ABL05911.1| two component transcriptional regulatory protein [Mycobacterium
           ulcerans Agy99]
          Length = 218

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L ++++G ++ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 157 LTERETEILRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQLANRVELTRYAIEHGL 216


>gi|121595802|ref|YP_987698.1| two component LuxR family transcriptional regulator [Acidovorax sp.
           JS42]
 gi|120607882|gb|ABM43622.1| two component transcriptional regulator, LuxR family [Acidovorax
           sp. JS42]
          Length = 239

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    +++G+T+ +IA  L +S  TV+ Y   +M K    + S    YA++N 
Sbjct: 177 QLSEREFQVFLKLAKGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNK 236

Query: 245 IV 246
           ++
Sbjct: 237 LI 238


>gi|119946176|ref|YP_943856.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
 gi|119864780|gb|ABM04257.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
          Length = 216

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE+  L  +S+G+ + +IAV L IS  TV ++++SI++K     R
Sbjct: 153 LTRRELMVLKNLSQGEANKQIAVNLFISEATVKSHVSSILKKLGASNR 200


>gi|10955045|ref|NP_059701.1| hypothetical protein pTi_029 [Agrobacterium tumefaciens]
 gi|6094514|sp|P33905|TRAR_AGRTU RecName: Full=Transcriptional activator protein traR
 gi|3377775|gb|AAC28121.1| traR [Agrobacterium tumefaciens]
 gi|81176493|gb|ABB59515.1| TraR [Agrobacterium tumefaciens]
          Length = 234

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ GKT +EIA + G+  N+V   +   M++   ++++   A A+R  +
Sbjct: 174 LDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|296268892|ref|YP_003651524.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091679|gb|ADG87631.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 197

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE + L   +EG T  EIA  + +S  TV NY+++ + K     R  AI  A
Sbjct: 134 DCPLTQRERDALKLAAEGATVAEIAAAIHLSEGTVRNYLSNAITKLGAGNRITAIRVA 191


>gi|269961289|ref|ZP_06175655.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833955|gb|EEZ88048.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 214

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G +++++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 153 DLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|265983374|ref|ZP_06096109.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|264661966|gb|EEZ32227.1| two component transcriptional regulator [Brucella sp. 83/13]
          Length = 254

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 189 LTAREVEVVHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 237


>gi|256826810|ref|YP_003150769.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582953|gb|ACU94087.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 470

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G++  LT REVE L  +  G++ + IA  L IS NTV ++   I RK    +R  A+
Sbjct: 409 GRERGLTEREVEVLELLCRGRSKNYIADTLFISENTVRSHARHIYRKLDVHSRQEAM 465


>gi|284030612|ref|YP_003380543.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809905|gb|ADB31744.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 227

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G T+ EIA  L +   TV  +++ ++ K   + R  A+ +A    
Sbjct: 158 ELTDREREVLGLIARGLTNTEIAGQLFVGEATVKTHVSRVLLKLGLRDRVQAVVFAYECG 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|148556258|ref|YP_001263840.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148501448|gb|ABQ69702.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 373

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT  E      ++EG    E+A  LGIS NTV  ++ SI  KT  K +S
Sbjct: 307 LTQGEAAVAAHLAEGLAPAEVAARLGISANTVRAHLRSIFGKTGVKRQS 355


>gi|126444037|ref|YP_001062591.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126223528|gb|ABN87033.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           668]
          Length = 254

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   +D  ELT RE + L +++  KT+ +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 142 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 201

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 202 NELIDLAA 209


>gi|299066579|emb|CBJ37769.1| putative transcriptional regulator; LuxR family [Ralstonia
           solanacearum CMR15]
          Length = 181

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+    H      LT RE +    + EGKTS +I   L IS  TV  Y A +M+K A  T
Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAAST 170


>gi|296446535|ref|ZP_06888477.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
 gi|296255889|gb|EFH02974.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
          Length = 209

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE++ L  +++GK   E+A  + +S  T+ N  A + RK   ++RS  I  AV N +
Sbjct: 145 LNERELDILRHLADGKDMTEMAFAMKVSYKTIANSCALLKRKLGARSRSDLIRIAVENRL 204


>gi|296270643|ref|YP_003653275.1| LuxR family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296093430|gb|ADG89382.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM
           43833]
          Length = 74

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE E +  I+ G ++ EIA  L +S  TV N++  I  K   ++R+ AI 
Sbjct: 11  LSKRETEVMELIASGHSNGEIARRLFLSEKTVKNHVNRIYAKLGVRSRTSAIG 63


>gi|307727191|ref|YP_003910404.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587716|gb|ADN61113.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 210

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +F++Y         L+ RE + L  ++ GK+ +EIA    +S  T++ +   +M+K    
Sbjct: 134 VFETYSGDAPPHEILSDREFQVLQMLALGKSLNEIAEAFALSAKTISTHKMRLMQKLGLA 193

Query: 232 TRSGAIAYAVRNNIV 246
             +  I YA+R+ +V
Sbjct: 194 NNADLIRYAIRHGLV 208


>gi|320009389|gb|ADW04239.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 210

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L  +S+G  + +IA  L IS  TV  ++  I  K    TR+GA++ A
Sbjct: 149 LTERELDILGQLSQGLGNRDIARALFISEATVKTHLGRIYEKLGVDTRAGAVSVA 203


>gi|255019078|ref|ZP_05291204.1| two-component response regulator [Listeria monocytogenes FSL
           F2-515]
          Length = 64

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 2   LLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 54


>gi|271961694|ref|YP_003335890.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504869|gb|ACZ83147.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 204

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE + L   +EG  + EIA  L +S  TV N++ +I+ K   ++R+ A+  A
Sbjct: 141 DNPLTPRESDVLRLTAEGAEATEIAARLFLSAGTVRNHLTAIVSKLNARSRTDAVRIA 198


>gi|254443862|ref|ZP_05057338.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198258170|gb|EDY82478.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 220

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + + +++ G T+ EIA  LG+S  TV ++ ++I +K      +G   +AVR  +
Sbjct: 158 LSDREKQIVVFVASGMTNKEIAQNLGLSIKTVESHRSNISKKLKIFDIAGVTLFAVRTGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|127511776|ref|YP_001092973.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126637071|gb|ABO22714.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 209

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 176 YDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           Y++  G D +     LT RE++ L  ++EGK++  I+  L IS  TV  ++ +++RK   
Sbjct: 137 YELKDGADEQAWIDNLTPRELQILEQLAEGKSNRVISEQLHISEGTVKVHVKNLLRKANA 196

Query: 231 KTRS 234
           K+R+
Sbjct: 197 KSRT 200


>gi|111026189|ref|YP_708472.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|40787202|gb|AAR90120.1| response regulator [Rhodococcus sp. DK17]
 gi|110825032|gb|ABH00314.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 209

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE++ L  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+
Sbjct: 148 LSSRELDVLKMIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRA 196


>gi|49484607|ref|YP_041831.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|82751986|ref|YP_417727.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|257423874|ref|ZP_05600303.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257426557|ref|ZP_05602959.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429193|ref|ZP_05605580.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257431839|ref|ZP_05608202.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257434799|ref|ZP_05610850.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|258425065|ref|ZP_05687936.1| two-component system response regulator [Staphylococcus aureus
           A9635]
 gi|282902306|ref|ZP_06310199.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906734|ref|ZP_06314582.1| two-component system NarL family response regulator NreC
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909710|ref|ZP_06317519.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911956|ref|ZP_06319752.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282915251|ref|ZP_06323028.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282917742|ref|ZP_06325492.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920975|ref|ZP_06328693.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925881|ref|ZP_06333529.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C101]
 gi|283767476|ref|ZP_06340391.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus H19]
 gi|283959174|ref|ZP_06376615.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293497647|ref|ZP_06665501.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511227|ref|ZP_06669923.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus M809]
 gi|293549835|ref|ZP_06672507.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295428978|ref|ZP_06821600.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|81696432|sp|Q6GE42|NREC_STAAR RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|123741052|sp|Q2YZ42|NREC_STAAB RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|49242736|emb|CAG41461.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|82657517|emb|CAI81959.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|257272892|gb|EEV04994.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257276188|gb|EEV07639.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279674|gb|EEV10261.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282718|gb|EEV12850.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285395|gb|EEV15511.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257844899|gb|EEV68942.1| two-component system response regulator [Staphylococcus aureus
           A9635]
 gi|282312710|gb|EFB43114.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315390|gb|EFB45774.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C427]
 gi|282318027|gb|EFB48387.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus D139]
 gi|282320972|gb|EFB51306.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282323652|gb|EFB53968.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326284|gb|EFB56588.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282329633|gb|EFB59154.1| two-component system NarL family response regulator NreC
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596765|gb|EFC01724.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|283461355|gb|EFC08439.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus H19]
 gi|283788766|gb|EFC27593.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290918882|gb|EFD95958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096578|gb|EFE26836.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465853|gb|EFF08383.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus M809]
 gi|295126737|gb|EFG56381.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|302334020|gb|ADL24213.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|315194884|gb|EFU25272.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 217

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K++   + YA++  +
Sbjct: 155 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKL 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|323699571|ref|ZP_08111483.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. ND132]
 gi|323459503|gb|EGB15368.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans ND132]
          Length = 226

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++EG T+  +A  L IS  TV N+  ++M+K   K+    + YA R  +
Sbjct: 159 LTPREQEVMRMLAEGLTAKAVAEQLFISPKTVENHRTNLMKKLGLKSSVELVRYAARLGL 218

Query: 246 V 246
           +
Sbjct: 219 I 219


>gi|317481525|ref|ZP_07940584.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|316902311|gb|EFV24206.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 99

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           D +L+ RE E L  I +G  S EIA  LG+S  TVNN+  +I+ K
Sbjct: 37  DKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNHRKNILSK 81


>gi|302039113|ref|YP_003799435.1| putative sensory transcriptional regulator, LuxR family [Candidatus
           Nitrospira defluvii]
 gi|300607177|emb|CBK43510.1| putative Sensory transcriptional regulator, LuxR family [Candidatus
           Nitrospira defluvii]
          Length = 235

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             L  RE E L  ++ GK+  +IA +L IS  TV N+I  I+ K    +R  A+A A
Sbjct: 169 LPLGEREREILRGLAAGKSGKDIADLLCISPVTVRNHIQHILEKLGAHSRLQALAIA 225


>gi|282877369|ref|ZP_06286192.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC
           35310]
 gi|281300421|gb|EFA92767.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC
           35310]
          Length = 203

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I +G  + EIA  L I   TV  +  +IM K   K+ S    YAV +  
Sbjct: 138 LSDREIEVLSLIVQGYINKEIADQLNIGMTTVITHRKNIMDKLGVKSVSALTIYAVMHGY 197

Query: 246 V 246
           V
Sbjct: 198 V 198


>gi|302528623|ref|ZP_07280965.1| predicted protein [Streptomyces sp. AA4]
 gi|302437518|gb|EFL09334.1| predicted protein [Streptomyces sp. AA4]
          Length = 324

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + LT RE + +  + +G  + +IA  L +S +TVN ++ ++ RKTA   R   +A
Sbjct: 266 YRLTPRERQVVQHLCDGAAAKQIARRLDLSVHTVNEHLKAVFRKTAASGRDELVA 320


>gi|167621873|ref|YP_001676658.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351614|gb|ABZ74344.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 74

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT R  E L   S+G T+ +I   LG+S  TVN Y++   ++   + R+ A+  AV+
Sbjct: 6   LTPRLREVLILASDGLTAIQIGDALGLSYRTVNQYLSDAYKRLGARNRTQAVTIAVQ 62


>gi|85860164|ref|YP_462366.1| two-component response regulator [Syntrophus aciditrophicus SB]
 gi|85723255|gb|ABC78198.1| two-component response regulator [Syntrophus aciditrophicus SB]
          Length = 215

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG T+ EIA  L +S  TV  +  +I +K      +  I YA+R  +
Sbjct: 153 LTAREREMLQLMAEGMTAKEIAAHLFVSVKTVETHRRNIAQKLNINRAAELIKYAIREGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|15889313|ref|NP_354994.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
 gi|15157150|gb|AAK87779.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
          Length = 231

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            KD  LT  E +CL  ++EG     +A  LG+S + +N   A I+ K +   R  A+A A
Sbjct: 164 AKDIALTDTERKCLELMAEGYAPVRLARALGLSGSDLNTLEAKIIGKFSASNRFQAVAKA 223

Query: 241 V 241
           V
Sbjct: 224 V 224


>gi|17546288|ref|NP_519690.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428585|emb|CAD15271.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 181

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+    H      LT RE +    + EGKTS +I   L IS  TV  Y A +M+K A  T
Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAAST 170


>gi|119714199|ref|YP_919341.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526108|gb|ABL79478.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 215

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +++G ++ EIA  L +   TV  ++A ++ K   + R  A+  A    
Sbjct: 154 DLTSRERDVLVLLAQGHSNAEIAARLVVGEGTVKTHVAHVLAKLGVRDRLQAVVSAFNAG 213

Query: 245 IV 246
           +V
Sbjct: 214 VV 215


>gi|306844463|ref|ZP_07477053.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1]
 gi|306275276|gb|EFM57026.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1]
          Length = 245

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228


>gi|298249276|ref|ZP_06973080.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297547280|gb|EFH81147.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1035

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+ +E + L  +  G+T  E+A  L +S NT+ + ++SI RK     R+ A+A   R N+
Sbjct: 975  LSRQEQQVLRLLMVGQTYAEMAQTLVVSLNTIKSQVSSIYRKLGVSRRTEAMAVTTRLNL 1034

Query: 246  V 246
            +
Sbjct: 1035 L 1035


>gi|270489958|ref|ZP_06207032.1| putative nitrate/nitrite response regulator protein NarL [Yersinia
           pestis KIM D27]
 gi|270338462|gb|EFA49239.1| putative nitrate/nitrite response regulator protein NarL [Yersinia
           pestis KIM D27]
          Length = 240

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 12/131 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180
           G D R   LT   AR  +  M+       +L+D   EI L     AA   N+F    + +
Sbjct: 76  GSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQY 135

Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 136 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195

Query: 233 RSGAIAYAVRN 243
           R  A    + N
Sbjct: 196 RVAATIMYLEN 206


>gi|261221423|ref|ZP_05935704.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|265997385|ref|ZP_06109942.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260920007|gb|EEX86660.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|262551853|gb|EEZ07843.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 254

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 237


>gi|226312417|ref|YP_002772311.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095365|dbj|BAH43807.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 214

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E +  I  G ++ E+A  L IS  TV N+  +IM+K    ++   I YA++N
Sbjct: 150 LTLREKELVRLIVLGYSNKEMADKLLISVKTVENHKTNIMQKLGLDSKHQLIQYAIKN 207


>gi|161520265|ref|YP_001583692.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189353558|ref|YP_001949185.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160344315|gb|ABX17400.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189337580|dbj|BAG46649.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
          Length = 209

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L +++EG  +  IA  LG+S  TV  +I +I R      R+ A A   +  +
Sbjct: 149 LTPRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|83748291|ref|ZP_00945316.1| Hypothetical Protein RRSL_02593 [Ralstonia solanacearum UW551]
 gi|207724045|ref|YP_002254443.1| hypothetical protein RSMK01503 [Ralstonia solanacearum MolK2]
 gi|207742938|ref|YP_002259330.1| hypothetical protein RSIPO_01113 [Ralstonia solanacearum IPO1609]
 gi|83725023|gb|EAP72176.1| Hypothetical Protein RRSL_02593 [Ralstonia solanacearum UW551]
 gi|206589253|emb|CAQ36215.1| hypothetical protein RSMK01503 [Ralstonia solanacearum MolK2]
 gi|206594333|emb|CAQ61260.1| hypothetical protein RSIPO_01113 [Ralstonia solanacearum IPO1609]
          Length = 181

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+    H      LT RE +    + EGKTS +I   L IS  TV  Y A +M+K A  T
Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAANT 170


>gi|315654297|ref|ZP_07907205.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491332|gb|EFU80949.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
          Length = 201

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  LT RE+E L    +G    EIA  + +S  TV NY++S + KT   T +GA
Sbjct: 138 DNPLTEREIEVLKIAEKGLKVQEIATQVYLSPGTVRNYLSSAIGKTHADTSAGA 191


>gi|306842522|ref|ZP_07475173.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2]
 gi|306287378|gb|EFM58858.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2]
          Length = 245

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 228


>gi|291008910|ref|ZP_06566883.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 199

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE++ L  +SEG    +IA  L  S  TV N +     +     R+ A++YA+R+ +
Sbjct: 139 VTNREIDVLGLVSEGNELKDIAQKLHFSERTVKNILYQFTSRFNLHNRAHAVSYAIRSGL 198

Query: 246 V 246
           +
Sbjct: 199 I 199


>gi|284043079|ref|YP_003393419.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283947300|gb|ADB50044.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 229

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  I+ G ++ EIA  L +++ TV  ++A ++ K   + R  A+  A    
Sbjct: 159 ELTERELEVLELIACGLSNAEIAERLVVAQTTVKTHVARVLMKLGLRDRVQAVVLAYEAG 218

Query: 245 IV 246
           +V
Sbjct: 219 VV 220


>gi|260567168|ref|ZP_05837638.1| LOW QUALITY PROTEIN: bacterial regulatory protein [Brucella suis
           bv. 4 str. 40]
 gi|261756088|ref|ZP_05999797.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Brucella suis bv. 3 str. 686]
 gi|260156686|gb|EEW91766.1| LOW QUALITY PROTEIN: bacterial regulatory protein [Brucella suis
           bv. 4 str. 40]
 gi|261745841|gb|EEY33767.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Brucella suis bv. 3 str. 686]
          Length = 222

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 157 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 205


>gi|256392339|ref|YP_003113903.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256358565|gb|ACU72062.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             G   EL+G+E + L  ++ G+   +IA+ +GIS  TV +Y+  I  K   + R+
Sbjct: 151 QAGPRLELSGQEKQVLRLVAAGERDRDIAMAMGISVRTVRSYLDRIRDKIGARRRA 206


>gi|255692220|ref|ZP_05415895.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
 gi|260622084|gb|EEX44955.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
          Length = 219

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  I
Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|239943004|ref|ZP_04694941.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989462|ref|ZP_04710126.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446476|ref|ZP_06585866.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349423|gb|EFE76327.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 222

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    
Sbjct: 158 DLTERETEVLVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|256395226|ref|YP_003116790.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361452|gb|ACU74949.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 235

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EIA  + I   TV  +++ I+ K   + R  A+ YA  + +
Sbjct: 169 LTDREREVLAHLARGLSNSEIAAHIYIGEGTVKTHVSRILAKLDLRDRVQAVVYAYESGL 228

Query: 246 V 246
           V
Sbjct: 229 V 229


>gi|156975940|ref|YP_001446847.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116]
 gi|156527534|gb|ABU72620.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116]
          Length = 214

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G +++++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 153 DLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|157371727|ref|YP_001479716.1| two component LuxR family transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157323491|gb|ABV42588.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 210

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A
Sbjct: 149 ELTERELDVLQEVARGLSNKQVAAQLHISEETVKVHIRNMLRKLDVRSRVAA 200


>gi|330958946|gb|EGH59206.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 208

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  TKT    I  A RN +V
Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTKTLVELIEMAKRNALV 208


>gi|330466893|ref|YP_004404636.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328809864|gb|AEB44036.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
          Length = 238

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G ++ EIA  L +   TV ++++ ++ K   + R  A+ +A    
Sbjct: 173 DLTPREREVLVLVAGGASNAEIATALHLGEATVKSHVSRVLAKLELRDRVQAVVFAYEQG 232

Query: 245 IV 246
           +V
Sbjct: 233 VV 234


>gi|325283103|ref|YP_004255644.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324314912|gb|ADY26027.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 233

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +++G ++ EIA  LG+S +TV +++A +  K     R+ A++ A
Sbjct: 172 LTPRESEVLPLLAQGLSNKEIARELGVSPDTVKDHLARMYGKLDACDRTEAVSRA 226


>gi|229819546|ref|YP_002881072.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229565459|gb|ACQ79310.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 222

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  ++EG ++ EIA    +S  TV  ++  ++ K   + R  A+  A    
Sbjct: 158 ELTPRELEVLVAVAEGLSNLEIADRFVVSEATVKTHVGRVLAKLGLRDRVQAVVLAYETG 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|159898692|ref|YP_001544939.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891731|gb|ABX04811.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 218

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L  I+ G T+  IA  L +S  TV N++++I+ K     R+ A   AV + +
Sbjct: 153 LTERELAVLNLIATGHTNASIAEQLRLSEGTVRNHVSTILSKLDVADRTQAALLAVEHGL 212


>gi|56459266|ref|YP_154547.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56178276|gb|AAV80998.1| Response regulator, LuxR family (CheY-HTH) [Idiomarina loihiensis
           L2TR]
          Length = 214

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT +E++ +  ++ G  + EIA  L IS +TV  +++SI RKT  + R
Sbjct: 154 LTPQELKVIELVATGARNKEIAEHLNISAHTVKTHLSSIFRKTGARNR 201


>gi|312141833|ref|YP_004009169.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311891172|emb|CBH50491.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 866

 Score = 37.7 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE   L  ++ G ++ EIA  L +S NTV + + ++ RK    +R  A+  A R  
Sbjct: 804 ELTERERAVLAELARGLSTLEIARTLFVSTNTVKSQLRTLYRKIDAHSRDEALEIAYRTG 863

Query: 245 IV 246
           ++
Sbjct: 864 LI 865


>gi|300703871|ref|YP_003745473.1| transcriptional regulator; luxr family [Ralstonia solanacearum
           CFBP2957]
 gi|299071534|emb|CBJ42858.1| putative transcriptional regulator; LuxR family [Ralstonia
           solanacearum CFBP2957]
          Length = 181

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+    H      LT RE +    + EGKTS +I   L IS  TV  Y A +M+K A  T
Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAANT 170


>gi|319762911|ref|YP_004126848.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330824990|ref|YP_004388293.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317117472|gb|ADU99960.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329310362|gb|AEB84777.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 208

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +LTGRE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T
Sbjct: 145 KLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANT 192


>gi|297161006|gb|ADI10718.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 54

 Score = 37.7 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+  +EG +  EIA  L +S  T+ NY+A+I RKT  + R  AI
Sbjct: 2   LSLAAEGASIAEIARSLHLSNGTIRNYMAAITRKTGARNRVDAI 45


>gi|325672904|ref|ZP_08152598.1| exopolyphosphatase [Rhodococcus equi ATCC 33707]
 gi|325556157|gb|EGD25825.1| exopolyphosphatase [Rhodococcus equi ATCC 33707]
          Length = 854

 Score = 37.7 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE   L  ++ G ++ EIA  L +S NTV + + ++ RK    +R  A+  A R  
Sbjct: 792 ELTERERAVLAELARGLSTLEIARTLFVSTNTVKSQLRTLYRKIDAHSRDEALEIAYRTG 851

Query: 245 IV 246
           ++
Sbjct: 852 LI 853


>gi|282863886|ref|ZP_06272944.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561587|gb|EFB67131.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E + L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  R
Sbjct: 156 LTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLAKLGMERRSQAAAYVAR 212


>gi|284033583|ref|YP_003383514.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283812876|gb|ADB34715.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 225

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G ++ EIA +  +S  TV  +I  I+ KT  + R   +       
Sbjct: 160 DLTAREREVLVEVARGLSNTEIARLFTLSEATVKTHIGRILAKTGLRDRVALVVLGYETG 219

Query: 245 IV 246
           +V
Sbjct: 220 LV 221


>gi|218458210|ref|ZP_03498301.1| LuxR family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 93

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+ RE++CL   + G  + +I+  L IS + V  Y+AS  RK    T S A+A A
Sbjct: 32  HLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKA 87


>gi|163757014|ref|ZP_02164120.1| transcriptional regulator, LuxR family protein [Kordia algicida
           OT-1]
 gi|161323018|gb|EDP94361.1| transcriptional regulator, LuxR family protein [Kordia algicida
           OT-1]
          Length = 204

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L  I++ KTS EIA +L IS++T++ +  ++++K   +  +  + YA+   
Sbjct: 143 LSRREKEILALIAQRKTSKEIAELLFISKSTIDTHRKNMIQKLQLQGANELLGYAIEQK 201


>gi|219669440|ref|YP_002459875.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219539700|gb|ACL21439.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 204

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE      + +G T+ EIA  L IS NT  N+++SIM K    +R
Sbjct: 147 DLTAREKIIYQMMRKGYTNKEIAKQLSISTNTARNHVSSIMHKLNISSR 195


>gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 231

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ +
Sbjct: 168 IDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227

Query: 244 NIV 246
            + 
Sbjct: 228 GLA 230


>gi|15925381|ref|NP_372915.1| response regulators of two-component regulatory [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927969|ref|NP_375502.1| hypothetical protein SA2179 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21284042|ref|NP_647130.1| hypothetical protein MW2313 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487173|ref|YP_044394.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650934|ref|YP_187192.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|87162341|ref|YP_494972.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|148268828|ref|YP_001247771.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394900|ref|YP_001317575.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151222503|ref|YP_001333325.1| transcriptional regulator DegU family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980706|ref|YP_001442965.1| hypothetical protein SAHV_2375 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510583|ref|YP_001576242.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141331|ref|ZP_03565824.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253314728|ref|ZP_04837941.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253730063|ref|ZP_04864228.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734193|ref|ZP_04868358.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255007165|ref|ZP_05145766.2| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794731|ref|ZP_05643710.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|258407411|ref|ZP_05680554.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|258422261|ref|ZP_05685173.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|258439653|ref|ZP_05690399.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|258442790|ref|ZP_05691350.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258446510|ref|ZP_05694665.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258450373|ref|ZP_05698465.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224]
 gi|258451304|ref|ZP_05699337.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|258455251|ref|ZP_05703211.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|262048801|ref|ZP_06021682.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30]
 gi|262051545|ref|ZP_06023766.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3]
 gi|282893837|ref|ZP_06302069.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A8117]
 gi|282920376|ref|ZP_06328099.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A9765]
 gi|282928424|ref|ZP_06336025.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A10102]
 gi|284025411|ref|ZP_06379809.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848934|ref|ZP_06789679.1| two-component system [Staphylococcus aureus A9754]
 gi|295405079|ref|ZP_06814892.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819]
 gi|296276000|ref|ZP_06858507.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297209789|ref|ZP_06926185.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297244136|ref|ZP_06928026.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796]
 gi|300910801|ref|ZP_07128251.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304379589|ref|ZP_07362322.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81693835|sp|Q5HDG5|NREC_STAAC RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81696270|sp|Q6G6T0|NREC_STAAS RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81704173|sp|Q7A029|NREC_STAAW RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81705142|sp|Q7A3U5|NREC_STAAN RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81855884|sp|Q99RN8|NREC_STAAM RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|123735950|sp|Q2FEA6|NREC_STAA3 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829240|sp|A7X623|NREC_STAA1 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829241|sp|A6U4C0|NREC_STAA2 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829243|sp|A5IVH2|NREC_STAA9 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829244|sp|A6QJN1|NREC_STAAE RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829245|sp|A8Z580|NREC_STAAT RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829309|sp|Q2FVM7|NREC_STAA8 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|13702340|dbj|BAB43481.1| SA2179 [Staphylococcus aureus subsp. aureus N315]
 gi|14248165|dbj|BAB58553.1| response regulators of two-component regulatory [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21205485|dbj|BAB96178.1| MW2313 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245616|emb|CAG44095.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285120|gb|AAW37214.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|87128315|gb|ABD22829.1| transcriptional regulator, DegU family [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|147741897|gb|ABQ50195.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947352|gb|ABR53288.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150375303|dbj|BAF68563.1| transcriptional regulator DegU family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722841|dbj|BAF79258.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369392|gb|ABX30363.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726276|gb|EES95005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727888|gb|EES96617.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257788703|gb|EEV27043.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|257840923|gb|EEV65374.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|257841692|gb|EEV66129.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|257847429|gb|EEV71431.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|257851911|gb|EEV75845.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257854578|gb|EEV77526.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257856465|gb|EEV79374.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224]
 gi|257861096|gb|EEV83911.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|257862462|gb|EEV85230.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|259160529|gb|EEW45552.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3]
 gi|259163059|gb|EEW47620.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30]
 gi|282589819|gb|EFB94903.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A10102]
 gi|282594322|gb|EFB99308.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A9765]
 gi|282763895|gb|EFC04023.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A8117]
 gi|285818052|gb|ADC38539.1| Two-component response regulator [Staphylococcus aureus 04-02981]
 gi|294824313|gb|EFG40737.1| two-component system [Staphylococcus aureus A9754]
 gi|294970024|gb|EFG46042.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819]
 gi|296885462|gb|EFH24399.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297178914|gb|EFH38159.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796]
 gi|300887781|gb|EFK82976.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304341765|gb|EFM07671.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315128595|gb|EFT84599.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315197413|gb|EFU27750.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139097|gb|EFW30979.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142526|gb|EFW34335.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329723454|gb|EGG59983.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21172]
 gi|329726678|gb|EGG63139.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21189]
 gi|329730103|gb|EGG66493.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21193]
          Length = 217

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K++   + YA++  +
Sbjct: 155 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKL 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|332283747|ref|YP_004415658.1| LuxR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330427700|gb|AEC19034.1| LuxR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 203

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE E   +I  G T  E A+ LGIS  TV  + A +M+K   K  +  ++  V
Sbjct: 137 KTTDLTPREQEVSGFIVNGLTCKETAIALGISHRTVEVHRARVMKKLGAKNTAELVSKIV 196


>gi|281425332|ref|ZP_06256245.1| hypothetical protein HMPREF0971_02305 [Prevotella oris F0302]
 gi|281400625|gb|EFB31456.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris F0302]
          Length = 318

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +L+ RE + +  + +G ++ EIA  L IS NTV  +  +I RK    + +G   YA+ 
Sbjct: 248 DDQLSEREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIV 307

Query: 243 NNIV 246
           N++V
Sbjct: 308 NHLV 311


>gi|302867778|ref|YP_003836415.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315505818|ref|YP_004084705.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570637|gb|ADL46839.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412437|gb|ADU10554.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 208

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE + L  +++G ++ EIA  L I   TV  +I S+M KT +  R
Sbjct: 150 DLTAREQDVLDLVADGLSNTEIADRLHIGVTTVKTHITSLMTKTGSANR 198


>gi|167638833|ref|ZP_02397108.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
 gi|167513297|gb|EDR88668.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
          Length = 233

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+ +S +     D  L T RE+  +
Sbjct: 128 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKSLFTERELSII 181

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 182 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226


>gi|146318597|ref|YP_001198309.1| DNA-binding response regulator, [Streptococcus suis 05ZYH33]
 gi|146320797|ref|YP_001200508.1| DNA-binding response regulator [Streptococcus suis 98HAH33]
 gi|253751721|ref|YP_003024862.1| response regulator protein [Streptococcus suis SC84]
 gi|145689403|gb|ABP89909.1| DNA-binding response regulator, putative [Streptococcus suis
           05ZYH33]
 gi|145691603|gb|ABP92108.1| DNA-binding response regulator, putative [Streptococcus suis
           98HAH33]
 gi|251816010|emb|CAZ51628.1| response regulator protein [Streptococcus suis SC84]
          Length = 199

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 9/75 (12%)

Query: 177 DVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           D+ +GK++         ELT RE E L  +  G+   +IA  L IS  T+ N+I +I+ K
Sbjct: 120 DISYGKNYFPNQNYFIDELTEREKEILIHLGNGEKRKDIAKSLYISDRTLTNHIQNILEK 179

Query: 228 TATKTRSGAIAYAVR 242
               +   A+  A +
Sbjct: 180 LEVDSTLKAVIKAQK 194


>gi|134097389|ref|YP_001103050.1| regulatory protein [Saccharopolyspora erythraea NRRL 2338]
 gi|291004621|ref|ZP_06562594.1| regulatory protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133910012|emb|CAM00124.1| hypothetical regulator protein [Saccharopolyspora erythraea NRRL
           2338]
          Length = 231

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 25/115 (21%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
           D+R+  L FD+  +  G  L             +E    A +++     +D+HW    E 
Sbjct: 98  DDRFALLPFDLTHLGRGAYL-------------FENAPAAPHRS----LFDLHWDNAREP 140

Query: 186 -------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  L+GRE+E    + +G T  E+A  L +S  TV   +A + ++  T +R
Sbjct: 141 ETPAQPGLSGRELEVARLLIDGATDAEVADRLHVSARTVRTAVARLQQRYGTSSR 195


>gi|94971090|ref|YP_593138.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553140|gb|ABF43064.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 213

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT R+ E L  ++EG++  E+  IL ++  TV  +   IM+    +  +  + YA++
Sbjct: 148 DVPLTERQREVLQLLAEGRSMKEVGAILKLTTRTVAFHKYRIMKAVHARNNAELVRYAIK 207

Query: 243 NNIV 246
            +I+
Sbjct: 208 KHIL 211


>gi|317407768|gb|EFV87695.1| hypothetical protein HMPREF0005_03216 [Achromobacter xylosoxidans
           C54]
          Length = 223

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G T  E+A  L IS  TV  +  ++MRK      +  +AYAVR  I
Sbjct: 163 LTRREQQILALIATGATGTEVARRLYISPLTVRKHRENLMRKLEVHNTAELVAYAVRLGI 222


>gi|300691308|ref|YP_003752303.1| transcriptional regulator; LuxR family [Ralstonia solanacearum
           PSI07]
 gi|299078368|emb|CBJ51018.1| putative transcriptional regulator; LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 181

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+    H      LT RE +    + EGKTS +I   L IS  TV  Y A +M+K A  T
Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAANT 170


>gi|229012429|ref|ZP_04169604.1| Two-component protein Kinase [Bacillus mycoides DSM 2048]
 gi|228748788|gb|EEL98638.1| Two-component protein Kinase [Bacillus mycoides DSM 2048]
          Length = 592

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY +S   K   + +  A+  A+  
Sbjct: 529 YELTTREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASSAYTKLGVRNKEEAVQKALEI 588

Query: 244 NIV 246
            ++
Sbjct: 589 GVI 591


>gi|291457263|ref|ZP_06596653.1| two-component system response regulator [Bifidobacterium breve DSM
           20213]
 gi|291381098|gb|EFE88616.1| two-component system response regulator [Bifidobacterium breve DSM
           20213]
          Length = 227

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  I+ G T  E+AV L IS  TV  +++S++RK     R+    +A    I
Sbjct: 167 LSAREQEVMRLIARGYTYKEVAVELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 226

Query: 246 V 246
           V
Sbjct: 227 V 227


>gi|254384074|ref|ZP_04999419.1| luxR family two component system response regulator [Streptomyces
           sp. Mg1]
 gi|194342964|gb|EDX23930.1| luxR family two component system response regulator [Streptomyces
           sp. Mg1]
          Length = 203

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 29/63 (46%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L    +G    EIA    +S+ TV NY++S   K   + R 
Sbjct: 132 AADAISAGDSPLTAREAEVLELAGDGAPIAEIAERASLSQGTVRNYLSSAASKLGAENRH 191

Query: 235 GAI 237
            A+
Sbjct: 192 TAV 194


>gi|148657524|ref|YP_001277729.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148569634|gb|ABQ91779.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 223

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L  ++ G ++ EIA  L I+  TV  +I++I+ K   + R+ A+  A
Sbjct: 159 LTERELDVLKALARGMSNKEIAAALVITEGTVKTHISNILAKLDVRDRTQAVLKA 213


>gi|84501129|ref|ZP_00999364.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Oceanicola batsensis HTCC2597]
 gi|84391196|gb|EAQ03614.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Oceanicola batsensis HTCC2597]
          Length = 269

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 26/36 (72%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LT R+ E L W+ +GKT+ +IA+++G++  TV  ++
Sbjct: 204 LTKRQREALQWVGDGKTTADIALLMGLTSATVEKHL 239


>gi|83955493|ref|ZP_00964124.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83840137|gb|EAP79312.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 220

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  +++GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 153 LTEREQTILLQLAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|325279884|ref|YP_004252426.1| transcriptional regulator, LuxR family [Odoribacter splanchnicus
           DSM 20712]
 gi|324311693|gb|ADY32246.1| transcriptional regulator, LuxR family [Odoribacter splanchnicus
           DSM 20712]
          Length = 206

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +T + +G T+ EIA  L +S +TV  +  +I RK    + +G   YA+ N +
Sbjct: 137 LSSREKEIITCVVKGMTNKEIADALYLSAHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 196

Query: 246 V 246
           V
Sbjct: 197 V 197


>gi|322506326|gb|ADX01780.1| ER transcriptional regulator [Acinetobacter baumannii 1656-2]
          Length = 58

 Score = 37.7 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +EGKTS EIA ILG++  TVN ++++ M+K     +  A   AV
Sbjct: 10  AEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAV 53


>gi|298247364|ref|ZP_06971169.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297550023|gb|EFH83889.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1035

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+ +E + L  +  G+T  E+A  L +S NT+ + ++SI RK     R+ A+A   R N+
Sbjct: 975  LSRQEQQVLRLLMVGQTYAEMAQTLVVSLNTIKSQVSSIYRKLGVSRRTEAMAVTTRLNL 1034

Query: 246  V 246
            +
Sbjct: 1035 L 1035


>gi|285016912|ref|YP_003374623.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283472130|emb|CBA14637.1| putative two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 221

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT +++  L  +  G+ + +IA  L +S  T+  ++ +I+RK     R+ A+  A + +
Sbjct: 149 ELTPQQIRVLQMLGAGRLNKQIAYDLSVSEATIKAHVTAILRKLGVTNRTQAVLLAGKLS 208

Query: 245 I 245
           I
Sbjct: 209 I 209


>gi|268316568|ref|YP_003290287.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
 gi|262334102|gb|ACY47899.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
          Length = 211

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           RI+ +   W    +A     +F+          +LT RE E L  ++ G ++ EIA  L 
Sbjct: 116 RIVHQGGSWMSAGVARRALELFRHQLAPAAALQQLTPREQEVLHLLARGLSNAEIAERLY 175

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +S  TV  +I  I RK   + R+ A++  ++N
Sbjct: 176 LSIETVRTHIRHIYRKLQARNRAEAVSRLLQN 207


>gi|261324311|ref|ZP_05963508.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261300291|gb|EEY03788.1| two component transcriptional regulator [Brucella neotomae 5K33]
          Length = 161

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+
Sbjct: 96  LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRT 144


>gi|320007637|gb|ADW02487.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 210

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  + EG ++ +I+  L +S+ TV +++  I  K    +R+ A+A A    +
Sbjct: 148 LTRRELEVLQLVGEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|322418556|ref|YP_004197779.1| LuxR family two component transcriptional regulator [Geobacter sp.
           M18]
 gi|320124943|gb|ADW12503.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M18]
          Length = 224

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  ++EG +S  IA  L +S  TV N+  ++M+K    +R   + YA R  +
Sbjct: 158 LSPREQQVMRLVAEGGSSRSIAEALQVSAKTVENHRTNLMKKLDVHSRIELVRYAARLGL 217

Query: 246 V 246
           +
Sbjct: 218 I 218


>gi|169631593|ref|YP_001705242.1| two-component LuxR family response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169243560|emb|CAM64588.1| Putative two-component system response regulator, LuxR family
           [Mycobacterium abscessus]
          Length = 222

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +++G ++ +IA  L +S  TV N++ S +RK     R     YA+ + +
Sbjct: 161 LSDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQSTLRKLQLGNRVELTRYAIEHGL 220


>gi|163786051|ref|ZP_02180499.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
 gi|159877911|gb|EDP71967.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
          Length = 206

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT R+VE L  IS+GKTS EIA  L I  +TV+ +  +++R    + +   + YA+
Sbjct: 145 LTKRQVEILGLISQGKTSREIADELFIGVHTVDTHRKNMIRILGLQGKGELMRYAL 200


>gi|116695906|ref|YP_841482.1| response regulator [Ralstonia eutropha H16]
 gi|113530405|emb|CAJ96752.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 215

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E +    +G    +IA  LG S +T+++     MRK   +T +G I YA  N 
Sbjct: 154 ELTQRELEVIRLYVQGLQLTDIAGKLGRSVSTISSQKTVAMRKLGVQTNTGLIRYAYENR 213

Query: 245 IV 246
           ++
Sbjct: 214 LI 215


>gi|15896192|ref|NP_349541.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025991|gb|AAK80881.1|AE007791_1 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510347|gb|ADZ21983.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 215

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++LT R++E +  I  G ++ EIA    ++  TV N+I  I+ K   + R+    +A++N
Sbjct: 153 YKLTDRQIEIIIAIGSGLSNKEIAEKQYVTEGTVKNHITEILSKLEMRDRTQIAIFALKN 212

Query: 244 NIV 246
            +V
Sbjct: 213 ELV 215


>gi|332525929|ref|ZP_08402070.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109480|gb|EGJ10403.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 242

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE E L W  EGK++  I  IL +S +TV  ++ + M K    ++  A+  A+
Sbjct: 181 KLTPREREVLQWTREGKSAWAIGQILSMSEHTVVFHLRNAMTKLEVSSKHSAVLKAM 237


>gi|326331785|ref|ZP_08198073.1| putative large transcriptional regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325950584|gb|EGD42636.1| putative large transcriptional regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 960

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 32/50 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +L+ REVE +  ++ G T+ ++A  L IS  TV+ ++++ MRK    +R+
Sbjct: 893 QLSPREVEVIQLVARGMTNKQVADTLFISPRTVHRHVSTAMRKLDVSSRT 942


>gi|288922580|ref|ZP_06416759.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288346054|gb|EFC80404.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 209

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +++G+ + + A  LGIS  T  ++I ++M K   +++  A+  A    +
Sbjct: 143 LTPRELDVLRQLAQGRDAQQTAATLGISLYTARDHIKALMAKLGARSQLEAVVSATSLGL 202

Query: 246 V 246
           V
Sbjct: 203 V 203


>gi|229588188|ref|YP_002870307.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229360054|emb|CAY46908.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 262

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ R+++    + +G+T+ +IA  LGI+ NTV  Y++ ++R T    R+  +A A+  N
Sbjct: 193 QLSPRQLDVARLVGKGQTNYQIACELGITENTVKLYVSQVLRLTHMHNRT-QLALALSPN 251


>gi|294813824|ref|ZP_06772467.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442243|ref|ZP_08216977.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326423|gb|EFG08066.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 205

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A A+  R
Sbjct: 141 LTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAFVAR 197


>gi|254507717|ref|ZP_05119849.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           16]
 gi|219549414|gb|EED26407.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           16]
          Length = 196

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A Y A+   S DV      ELT RE++ L  +++G  + +IA  L IS +TV  ++ S+
Sbjct: 117 VAKYLADRENSTDVFD----ELTDREMQILKEVAKGYRNKQIADTLFISESTVKVHMKSL 172

Query: 225 MRKTATKTRSGA 236
           ++K +  +R+ A
Sbjct: 173 LKKLSVPSRTAA 184


>gi|167723585|ref|ZP_02406821.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
 gi|167819715|ref|ZP_02451395.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
 gi|167828097|ref|ZP_02459568.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
 gi|167849564|ref|ZP_02475072.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|167898163|ref|ZP_02485565.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
 gi|167914883|ref|ZP_02501974.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
 gi|167922725|ref|ZP_02509816.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217418612|ref|ZP_03450119.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           576]
 gi|226200238|ref|ZP_03795783.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|217397916|gb|EEC37931.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           576]
 gi|225927746|gb|EEH23788.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 254

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   +D  ELT RE + L +++  KT+ +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 142 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 201

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 202 NELIDLAA 209


>gi|309812776|ref|ZP_07706515.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
 gi|308433293|gb|EFP57186.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
          Length = 231

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE + +T I  G  +  IA  L +S NT+ +YI S  R     +RS A+ + 
Sbjct: 161 GRAEGLTEREAQAVTLICRGLPNGAIAHELNVSLNTLKSYIRSAYRTMGVASRSEAVLWG 220

Query: 241 VRNNI 245
           V   +
Sbjct: 221 VARGL 225


>gi|302334993|ref|YP_003800200.1| transcriptional regulator, MarR family [Olsenella uli DSM 7084]
 gi|301318833|gb|ADK67320.1| transcriptional regulator, MarR family [Olsenella uli DSM 7084]
          Length = 366

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 186 LTGREVECLTWISEGK--TSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L+WI E    T  E+A   GISR++V  +++S+MRK A   R
Sbjct: 4   LTERERQILSWIEENPAVTQSELAGRAGISRSSVAVHVSSLMRKGAILGR 53


>gi|255325217|ref|ZP_05366323.1| two-component system response regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311739691|ref|ZP_07713526.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297782|gb|EET77093.1| two-component system response regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311305507|gb|EFQ81575.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 247

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  ++ G ++ EI+    +S  TV  ++  I+ KT ++ R  A+ YA+ + 
Sbjct: 177 DLTPRELDVLKLMALGYSNTEISECEFVSMATVKTHVRHILTKTGSRDRVHAVLYALTHG 236

Query: 245 IV 246
           +V
Sbjct: 237 VV 238


>gi|91776339|ref|YP_546095.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91710326|gb|ABE50254.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 215

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + LT I+ G +  EIA  L +S  TV+ Y A ++ K   +  +    YA++NN+
Sbjct: 154 LSNREFQTLTMIASGLSVSEIAENLSLSVKTVSMYRARLLEKLNLRHNAELTHYAIKNNL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|22125339|ref|NP_668762.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           KIM 10]
 gi|45442440|ref|NP_993979.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Microtus str. 91001]
 gi|167399199|ref|ZP_02304723.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|21958219|gb|AAM85013.1|AE013747_3 nitrate/nitrite response regulator [Yersinia pestis KIM 10]
 gi|45437305|gb|AAS62856.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Microtus str. 91001]
 gi|167051703|gb|EDR63111.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. UG05-0454]
          Length = 220

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 159 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 217


>gi|148821388|ref|YP_001286142.1| LuxR family two component transcriptional regulator [Mycobacterium
           tuberculosis F11]
 gi|167970318|ref|ZP_02552595.1| transcriptional regulator, LuxR family protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215406188|ref|ZP_03418369.1| LuxR family two component transcriptional regulator [Mycobacterium
           tuberculosis 02_1987]
 gi|215414060|ref|ZP_03422719.1| LuxR family two component transcriptional regulator [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215425401|ref|ZP_03423320.1| LuxR family two component transcriptional regulator [Mycobacterium
           tuberculosis T92]
 gi|215433115|ref|ZP_03431034.1| LuxR family two component transcriptional regulator [Mycobacterium
           tuberculosis EAS054]
 gi|215448474|ref|ZP_03435226.1| LuxR family two component transcriptional regulator [Mycobacterium
           tuberculosis T85]
 gi|218755931|ref|ZP_03534727.1| LuxR family two component transcriptional regulator [Mycobacterium
           tuberculosis GM 1503]
 gi|219555992|ref|ZP_03535068.1| LuxR family two component transcriptional regulator [Mycobacterium
           tuberculosis T17]
 gi|253797117|ref|YP_003030118.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis KZN 1435]
 gi|254233582|ref|ZP_04926908.1| hypothetical protein TBCG_00193 [Mycobacterium tuberculosis C]
 gi|254366646|ref|ZP_04982690.1| hypothetical two component transcriptional regulatory protein
           (probably luxR-family) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549134|ref|ZP_05139581.1| two component system transcriptional regulator, luxR-family protein
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289552447|ref|ZP_06441657.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis KZN 605]
 gi|289747962|ref|ZP_06507340.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|308394867|ref|ZP_07491786.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu012]
 gi|124603375|gb|EAY61650.1| hypothetical protein TBCG_00193 [Mycobacterium tuberculosis C]
 gi|134152158|gb|EBA44203.1| hypothetical two component transcriptional regulatory protein
           (probably luxR-family) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148719915|gb|ABR04540.1| two component transcriptional regulatory protein, luxR-family
           [Mycobacterium tuberculosis F11]
 gi|253318620|gb|ACT23223.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis KZN 1435]
 gi|289437079|gb|EFD19572.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis KZN 605]
 gi|289688490|gb|EFD55978.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|308367544|gb|EFP56395.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu012]
 gi|323717184|gb|EGB26393.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis CDC1551A]
 gi|326905951|gb|EGE52884.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis W-148]
 gi|328456904|gb|AEB02327.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 4207]
          Length = 232

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  REV  L  +++G ++ ++AV L     T+ N +  I+ +   + R+ A+A+A+R  +
Sbjct: 172 LAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGL 231

Query: 246 V 246
           +
Sbjct: 232 I 232


>gi|158314150|ref|YP_001506658.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158109555|gb|ABW11752.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec]
          Length = 151

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 33/55 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + LT RE E +   ++G+++ ++A  LGI   T  +++ ++  KT  +TR+  +A
Sbjct: 62  YGLTPREREVVGLAAQGRSTRQMATALGIPPFTAQDHLKAVFTKTGVRTRAELVA 116


>gi|15598241|ref|NP_251735.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107102595|ref|ZP_01366513.1| hypothetical protein PaerPA_01003659 [Pseudomonas aeruginosa PACS2]
 gi|116051046|ref|YP_790127.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890755|ref|YP_002439619.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254236018|ref|ZP_04929341.1| hypothetical protein PACG_01974 [Pseudomonas aeruginosa C3719]
 gi|254241748|ref|ZP_04935070.1| hypothetical protein PA2G_02459 [Pseudomonas aeruginosa 2192]
 gi|296388460|ref|ZP_06877935.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313108339|ref|ZP_07794371.1| LOW QUALITY PROTEIN: putative two-component response regulator
           [Pseudomonas aeruginosa 39016]
 gi|9949150|gb|AAG06433.1|AE004729_7 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115586267|gb|ABJ12282.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167949|gb|EAZ53460.1| hypothetical protein PACG_01974 [Pseudomonas aeruginosa C3719]
 gi|126195126|gb|EAZ59189.1| hypothetical protein PA2G_02459 [Pseudomonas aeruginosa 2192]
 gi|218770978|emb|CAW26743.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310880873|gb|EFQ39467.1| LOW QUALITY PROTEIN: putative two-component response regulator
           [Pseudomonas aeruginosa 39016]
          Length = 207

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 180 WGKDFELTGR----EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +  D EL GR    EV  L ++S+G ++ +I+  + IS  TV+ Y A ++ K    +   
Sbjct: 137 YSDDVELLGRLSDREVSVLQYLSQGYSNKQISEQMFISNKTVSTYKARLLLKLNAGSLVD 196

Query: 236 AIAYAVRNNIV 246
            I +A RN ++
Sbjct: 197 LIEFAKRNTLI 207


>gi|300791111|ref|YP_003771402.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800625|gb|ADJ51000.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 222

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 36/71 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D    +   LT RE + L  +++G T+ +IA  L +S  TV N++ S +RK     R 
Sbjct: 149 SEDAAGAEPPRLTERETDVLRLVAKGLTARQIAERLVLSHRTVENHVQSTLRKLQLHNRV 208

Query: 235 GAIAYAVRNNI 245
               YA+ + +
Sbjct: 209 ELARYAIEHGL 219


>gi|299141524|ref|ZP_07034660.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
 gi|298576860|gb|EFI48730.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
          Length = 318

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +L+ RE + +  + +G ++ EIA  L IS NTV  +  +I RK    + +G   YA+ 
Sbjct: 248 DDQLSEREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIV 307

Query: 243 NNIV 246
           N++V
Sbjct: 308 NHLV 311


>gi|256424453|ref|YP_003125106.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256039361|gb|ACU62905.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 219

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  + +LT RE+E L  I    T+ EI+  + +S  TV      ++ KT  K   G + +
Sbjct: 152 FRNEVQLTDRELEVLRLICNEHTTQEISKEIFLSPRTVEGLRQKLLEKTGAKNIVGLVMH 211

Query: 240 AVRNNIV 246
           A RN I+
Sbjct: 212 AFRNGII 218


>gi|257791938|ref|YP_003182544.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257475835|gb|ACV56155.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 258

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    I+EG ++ +I + L IS NTV  ++  I +K     R   +A   R   
Sbjct: 194 LTAREQEIAALIAEGLSNQQIGLRLFISENTVKKHVKGIFQKMGVSNRHQLMAELYRTAA 253

Query: 246 V 246
           +
Sbjct: 254 I 254


>gi|189467258|ref|ZP_03016043.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM
           17393]
 gi|189435522|gb|EDV04507.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM
           17393]
          Length = 250

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE E L  I++GK S +IA  L IS NTVN +  +I+ K
Sbjct: 190 LSEREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEK 231


>gi|182436186|ref|YP_001823905.1| transcriptional regulator [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326776812|ref|ZP_08236077.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|31044104|dbj|BAA33536.2| transcriptional regulator [Streptomyces griseus]
 gi|178464702|dbj|BAG19222.1| transcriptional regulator [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326657145|gb|EGE41991.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 201

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  L+ RE+  L+    G T   IA  L ++  TV NY+A+ +RK+  + R  AI  A
Sbjct: 138 DMPLSPRELSVLSMAEGGDTVAGIAGRLHLTPGTVRNYLAAAIRKSGARNRLDAIRRA 195


>gi|300786703|ref|YP_003766994.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796217|gb|ADJ46592.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G  +  IA  L +S+ TV N+++ I RK     RS AIA A    I
Sbjct: 153 LTLREQEILRLVARGMGNASIAEELVLSQKTVRNHVSHIFRKLRVTDRSQAIAKAKEAGI 212


>gi|227549911|ref|ZP_03979960.1| possible nitrate/nitrite response regulator protein NarP
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078007|gb|EEI15970.1| possible nitrate/nitrite response regulator protein NarP
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 215

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE+E L  ++ G T  EI   L IS  TV  + ++I+RKT T  R
Sbjct: 155 LTRRELEVLRLLARGYTYKEIGAQLFISVKTVETHASNILRKTQTSNR 202


>gi|153834026|ref|ZP_01986693.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
 gi|148869670|gb|EDL68656.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
          Length = 214

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G +++++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 153 DLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|77459476|ref|YP_348983.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77383479|gb|ABA74992.1| putative luxR family response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 201

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT R+ E L  I++GKT+ EIA  L IS  TV  +++S++R     +R+ A
Sbjct: 143 LTPRQQEVLRLIAQGKTNKEIARELDISPFTVRIHVSSLLRVLNVPSRAAA 193


>gi|308445190|gb|ADO32764.1| putative two-component response regulator [Streptomyces
           vietnamensis]
          Length = 202

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G +  LT RE+E L   + G  + EIA    +S  TV NY+ S++ K   + R  A+  A
Sbjct: 136 GAESPLTKRELEVLRLTAAGDEAPEIAARPHLSTGTVRNYLTSVVTKLNARNRVDAVRIA 195


>gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
 gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
          Length = 273

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D   T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ 
Sbjct: 209 DLVFTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFIKTGTASRTELVRYALE 268

Query: 243 NNIV 246
           + +V
Sbjct: 269 HGLV 272


>gi|156741128|ref|YP_001431257.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232456|gb|ABU57239.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 222

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L  ++ G ++ EIA  L I+  TV  +I++I+ K   + R+ A+  A
Sbjct: 159 LTERELDVLKALARGMSNKEIAAALVITEGTVKTHISNILAKLDVRDRTQAVLKA 213


>gi|73539733|ref|YP_294253.1| LuxR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72117146|gb|AAZ59409.1| transcriptional regulator, LuxR family [Ralstonia eutropha JMP134]
          Length = 381

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           F L+  E      + +GK  DE A   G+S NTV   + +I  KT+T++++ A++
Sbjct: 314 FGLSTAEAAVAEALIDGKAPDEYAATAGVSVNTVRTQLRAIYDKTSTRSKTEAVS 368


>gi|300088662|ref|YP_003759184.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528395|gb|ADJ26863.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 248

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+  L  +S+G T+ EIA+ L  S + V  Y+  IM K     R+     A + N
Sbjct: 186 QLSPREMSTLRLVSDGMTNKEIAMKLNCSESAVKGYVTRIMNKLNVTNRTQIALKASQLN 245

Query: 245 IV 246
           I+
Sbjct: 246 II 247


>gi|182439415|ref|YP_001827134.1| LuxR family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178467931|dbj|BAG22451.1| putative LuxR-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 98

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LTGRE + L  ++ G T  EIA  L +   T   ++A+++ KT  + R+ A+
Sbjct: 23  LTGREADVLRLMAAGLTDAEIAGRLQVGPATAKTHVAAVLAKTGARDRTQAV 74


>gi|149187161|ref|ZP_01865459.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148838697|gb|EDL55636.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 227

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  + +G ++ EIA  L +S NTV  ++ +  +K   K R  A+ + V+NN
Sbjct: 161 KLTKREQQIIKLLGDGASNTEIADTLFVSENTVKAHLHNAFKKIKVKNRLQALLW-VKNN 219

Query: 245 I 245
           I
Sbjct: 220 I 220


>gi|21654819|gb|AAK76734.1| quorum sensing regulator SprR [Serratia proteamaculans]
          Length = 249

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            T RE E L W S GKT  EIA I  IS +TV  ++ +I+ K        AI   V
Sbjct: 181 FTPRENEVLYWASMGKTYGEIATIASISLSTVKFHMGNIVVKLGVSNARQAIRLGV 236


>gi|326381419|ref|ZP_08203113.1| two component transcriptional regulator, LuxR family protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326199666|gb|EGD56846.1| two component transcriptional regulator, LuxR family protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 209

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G D  ELT REV+ L  +  G ++ +IA  L I   TV  +++ ++ K   ++R  A   
Sbjct: 141 GPDLSELTDREVQVLGGLGAGLSNAQIAGRLTIGEATVKTHVSRVLMKLGVQSRVQAAVL 200

Query: 240 AVRNNI 245
           A R+ +
Sbjct: 201 AARSGV 206


>gi|319944660|ref|ZP_08018927.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
 gi|319742099|gb|EFV94519.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
          Length = 233

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G+++ EIA  L ++ +TV  ++ +I++K    +R     YAV N +
Sbjct: 169 LTAREREIMQCLARGESNKEIARRLDVAESTVKIHVQNILKKLNLSSRVQIAVYAVENGL 228


>gi|297538155|ref|YP_003673924.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257502|gb|ADI29347.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 215

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 152 RIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           RI+ + + +   E+G + A Q  M      H      L+ RE + +T I+ G T  EIA 
Sbjct: 121 RIVAKGKKYISPEVGEILANQVGMETEKAPHES----LSDREFQTMTLIASGFTVGEIAE 176

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  T++ Y   ++ K   +  +    YA++N++V
Sbjct: 177 KLALSVKTISMYRTRMLEKLNLRHNAELTHYAIKNHLV 214


>gi|196250317|ref|ZP_03149010.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|196210206|gb|EDY04972.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
          Length = 552

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE++ L  + +G ++ EI+  L IS +TV N+I +I +K     RS  IA
Sbjct: 482 QLTSREMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 535


>gi|182437202|ref|YP_001824921.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777832|ref|ZP_08237097.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465718|dbj|BAG20238.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658165|gb|EGE43011.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 222

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    
Sbjct: 158 DLTERETEVLVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|126458443|ref|YP_001075546.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134283506|ref|ZP_01770206.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           305]
 gi|167742549|ref|ZP_02415323.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|242312929|ref|ZP_04811946.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106b]
 gi|126232211|gb|ABN95624.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106a]
 gi|134245255|gb|EBA45349.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           305]
 gi|242136168|gb|EES22571.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106b]
          Length = 252

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   +D  ELT RE + L +++  KT+ +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 140 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 199

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 200 NELIDLAA 207


>gi|120403820|ref|YP_953649.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119956638|gb|ABM13643.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 207

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G T+ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 146 LTERETEILRHVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQIGNRVELARYAIEHGL 205


>gi|86741458|ref|YP_481858.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86568320|gb|ABD12129.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 306

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE   L  ++ G ++ EIA  L ++  TV  Y+   MRK     R  A  YA 
Sbjct: 217 QALGLTSRERAVLGQLARGLSNAEIACELALAEATVKRYLTGAMRKIGQPDRLRAGLYAY 276

Query: 242 RNNIV 246
           R+ ++
Sbjct: 277 RHGLL 281


>gi|83716364|ref|YP_439443.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|167577886|ref|ZP_02370760.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167616010|ref|ZP_02384645.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142565|ref|ZP_05590827.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|83650189|gb|ABC34253.1| DNA-binding response regulator, LuxR family [Burkholderia
           thailandensis E264]
          Length = 215

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    I+ G+T  EIA  L +S  TV+ Y A I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVFRRIAAGETITEIAQALDVSAKTVSTYKARILEKMQMPHDAALVRYAIRHKL 208


>gi|322437485|ref|YP_004219575.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165378|gb|ADW71081.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 244

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  +++G ++ EIA  L ++ +T+  ++ S++ K     R+ A+  A++  
Sbjct: 181 KLSEREIEVLRLVAKGNSNKEIAAQLFVTEDTIKVHVRSMLAKLHASDRTQAVVIAIQRG 240

Query: 245 IV 246
           ++
Sbjct: 241 LL 242


>gi|291007043|ref|ZP_06565016.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 198

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +++G  + EIA  L  S  TV N +  +  +   + R  A+AYA+R  +
Sbjct: 138 LTTREIDVLRLMADGLDTAEIAQKLCYSERTVKNVVYGVTSRLNLRNRPHAVAYAMRAGV 197

Query: 246 V 246
           +
Sbjct: 198 I 198


>gi|268322279|emb|CBH32801.1| putative regulatory gene [Streptomyces sp. C23201NS3]
          Length = 201

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R++E L   + G    EIA  L +S  TV NY++S+  K   +TR  A+  A
Sbjct: 141 LTERQLEILRLAAAGDGVPEIAARLHLSPGTVRNYLSSVTTKLNARTRMDAVRIA 195


>gi|256841922|ref|ZP_05547427.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256736238|gb|EEU49567.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 194

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  + E    D+IA +L IS +TV N+I +I  KT+T+T +  + Y   +N+
Sbjct: 134 LSFRETNVLRLVIERYKVDDIAQLLHISPHTVANHIRNIHEKTSTRTIADLVDYWHTHNL 193


>gi|226356417|ref|YP_002786157.1| DNA-binding response regulator [Deinococcus deserti VCD115]
 gi|226318407|gb|ACO46403.1| putative DNA-binding response regulator [Deinococcus deserti
           VCD115]
          Length = 194

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  LG+S +TV +++A +  K     R+ A++ A
Sbjct: 133 LTPRESEVLPLLALGYSNKEIAKNLGVSPDTVKDHLARLYSKLDAGDRTEAVSRA 187


>gi|188592307|ref|YP_001796905.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|170938681|emb|CAP63668.1| putative transcriptionat regulator, LuxR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 379

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K F LT  E+E    + +G T DE A  LG+ +NT   ++  I  KT   TR   +   +
Sbjct: 313 KLFHLTPTEIELALLMVDGLTLDEAATRLGVKKNTARAHLRGIFAKTGA-TRQAVLVKML 371

Query: 242 RNNIV 246
            +++V
Sbjct: 372 LSSVV 376


>gi|32035561|ref|ZP_00135492.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207547|ref|YP_001052772.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae L20]
 gi|126096339|gb|ABN73167.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 209

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    +R  A
Sbjct: 149 LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|325269083|ref|ZP_08135704.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324988704|gb|EGC20666.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 217

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S    YAV
Sbjct: 152 LSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAV 207


>gi|308231489|ref|ZP_07412623.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu001]
 gi|308369330|ref|ZP_07417366.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu002]
 gi|308370340|ref|ZP_07421139.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu003]
 gi|308371615|ref|ZP_07425507.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu004]
 gi|308372832|ref|ZP_07430042.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu005]
 gi|308373913|ref|ZP_07434085.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu006]
 gi|308375096|ref|ZP_07442660.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu007]
 gi|308376332|ref|ZP_07438447.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu008]
 gi|308378574|ref|ZP_07483048.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu009]
 gi|308379720|ref|ZP_07487281.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu010]
 gi|308380921|ref|ZP_07491499.2| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu011]
 gi|308217119|gb|EFO76518.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu001]
 gi|308328057|gb|EFP16908.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu002]
 gi|308332337|gb|EFP21188.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu003]
 gi|308336088|gb|EFP24939.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu004]
 gi|308339719|gb|EFP28570.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu005]
 gi|308343725|gb|EFP32576.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu006]
 gi|308347445|gb|EFP36296.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu007]
 gi|308351495|gb|EFP40346.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu008]
 gi|308352073|gb|EFP40924.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu009]
 gi|308356023|gb|EFP44874.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu010]
 gi|308359978|gb|EFP48829.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis SUMu011]
          Length = 213

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  REV  L  +++G ++ ++AV L     T+ N +  I+ +   + R+ A+A+A+R  +
Sbjct: 153 LAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGL 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|218458076|ref|ZP_03498167.1| LuxR family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 49

 Score = 37.4 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+R
Sbjct: 1   DGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIR 44


>gi|170700161|ref|ZP_02891180.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134936|gb|EDT03245.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 395

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT  E E    + +G T DE A   GI++NT   ++  I  KT   TR   +   + N
Sbjct: 331 FRLTPMETEIALLLVDGLTLDEAAAATGITKNTARAHLRGIFAKTGA-TRQAVLVKTLLN 389

Query: 244 NIV 246
           ++V
Sbjct: 390 SVV 392


>gi|154493931|ref|ZP_02033251.1| hypothetical protein PARMER_03275 [Parabacteroides merdae ATCC
           43184]
 gi|154086191|gb|EDN85236.1| hypothetical protein PARMER_03275 [Parabacteroides merdae ATCC
           43184]
          Length = 202

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N +
Sbjct: 135 LSAREKEIVVCVVKGMTNREIADRLFLSTHTVVTHRRNIARKLQVHSASGLTVYAIVNKL 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|149911017|ref|ZP_01899646.1| regulatory protein CsgD [Moritella sp. PE36]
 gi|149805920|gb|EDM65906.1| regulatory protein CsgD [Moritella sp. PE36]
          Length = 230

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  +  G ++ EIA  L +S +T+ +++ ++ +K   K R  A+++A
Sbjct: 170 ELTTREQEILRQLMTGSSNLEIADALYVSEHTIKSHLYNVFKKIKVKNRLQAVSWA 225


>gi|116620528|ref|YP_822684.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223690|gb|ABJ82399.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 251

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + ++ +S+G  + EIA  L IS  TV  Y++ + +K   K R     + ++N
Sbjct: 139 LTQREGQLVSLLSQGLKNKEIATTLMISEGTVKVYLSRLFQKVGVKDRFELALFGLKN 196


>gi|300786261|ref|YP_003766552.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795775|gb|ADJ46150.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L+ +E   L  ++EG T+ +IA  L ++  TV NY++S++ K   + R+ A  Y
Sbjct: 153 QLSPQERRVLDLVAEGLTNRQIAERLFLAEKTVKNYVSSVLHKLGVERRTSAAVY 207


>gi|157850157|gb|ABV89904.1| acyl-homoserine lactone receptor [Burkholderia pyrrocinia]
          Length = 137

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 21/33 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           LT RE E L W +EGKT+ EI  IL IS  TV 
Sbjct: 102 LTAREREVLCWTAEGKTACEIGQILSISERTVT 134


>gi|182437557|ref|YP_001825276.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466073|dbj|BAG20593.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 219

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  R
Sbjct: 157 LTEQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 213


>gi|330998685|ref|ZP_08322414.1| transcriptional regulatory protein FixJ [Parasutterella
           excrementihominis YIT 11859]
 gi|329576424|gb|EGG57936.1| transcriptional regulatory protein FixJ [Parasutterella
           excrementihominis YIT 11859]
          Length = 226

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +LT RE   L  I  G+ + +IA  LGIS  TV  + ASIM KT + T
Sbjct: 156 KLTPREQHVLERIVSGRLNKQIAADLGISIKTVEAHRASIMDKTNSGT 203


>gi|323359244|ref|YP_004225640.1| DNA-binding HTH domain-containing proteins [Microbacterium
           testaceum StLB037]
 gi|323275615|dbj|BAJ75760.1| DNA-binding HTH domain-containing proteins [Microbacterium
           testaceum StLB037]
          Length = 283

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 155 LRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +R RL E+   LAA   +  +S +     D  L+ RE++ L   + G T+ EIA  L + 
Sbjct: 193 VRRRLEELEARLAALTGDAPRSGE---DADIHLSRREIDVLACAAVGSTNGEIAASLHLR 249

Query: 214 RNTVNNYIASIMRKTATKT 232
             TV +Y+AS M K    T
Sbjct: 250 ETTVKSYLASAMAKLDAST 268


>gi|239929933|ref|ZP_04686886.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438267|ref|ZP_06577657.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341162|gb|EFE68118.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 221

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +  S    +G   +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   +
Sbjct: 147 LMPSAQAAYG---DLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLR 203

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A    +V
Sbjct: 204 DRTQAAVFAYEARLV 218


>gi|239929196|ref|ZP_04686149.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
          Length = 291

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           F+L+ RE E +  I+ G  + +IA    IS  TV N+I  I  K  + +RS A A
Sbjct: 223 FQLSTREAEIMDLIASGMNNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAA 277


>gi|291299597|ref|YP_003510875.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568817|gb|ADD41782.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 135

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ GK++ EI   L I+ +TV  +   + RK   + R+ A+A A R  I
Sbjct: 73  LSQRETQVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRTGI 132

Query: 246 V 246
           +
Sbjct: 133 L 133


>gi|256826588|ref|YP_003150547.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582731|gb|ACU93865.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 261

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   +LT RE E L +++ G +++EIA  L IS  TV  ++A IM K     R+  +  A
Sbjct: 192 GGLVDLTDREREILRFVARGMSNEEIADDLVISPATVKTHLARIMGKLDAHDRAQLVVAA 251

Query: 241 VRNNIV 246
             + +V
Sbjct: 252 YESGLV 257


>gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 229

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ +
Sbjct: 166 IDLTPREQSVLNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 225

Query: 244 NIV 246
            + 
Sbjct: 226 GLA 228


>gi|83717618|ref|YP_439471.1| transcription regulator LuxR family protein [Burkholderia
           thailandensis E264]
 gi|83651443|gb|ABC35507.1| transcription regulator LuxR family VCA1078 [Burkholderia
           thailandensis E264]
          Length = 268

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   +D  ELT RE + L +++  KT+ +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 155 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 214

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 215 NELIDLAA 222


>gi|89094462|ref|ZP_01167402.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89081354|gb|EAR60586.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 221

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++   LT ++EG  + +IA  L +S  T+  ++ +I+RK    +R+ A+  A R
Sbjct: 154 LTPQQFRVLTMLTEGLLNKQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQR 210


>gi|260062316|ref|YP_003195396.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Robiginitalea biformata
           HTCC2501]
 gi|88783878|gb|EAR15049.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Robiginitalea biformata
           HTCC2501]
          Length = 217

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  I++G+TS +IA  L +SR T++ +  +I +K   ++  G +  A
Sbjct: 148 LTRRERQVLELIAQGRTSQQIAESLKLSRFTIDTHRKNIHKKMGIRSNIGLLKAA 202


>gi|94972309|ref|YP_594349.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554360|gb|ABF44275.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 209

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G  + EIA  L IS +TV  ++  I+ K     R+ A   A+R  +
Sbjct: 149 LTPRELDVLRLIADGLANKEIAAALEISVSTVKLHVQEILVKLQAADRTQAAVKALRAGL 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|297162504|gb|ADI12216.1| LuxR family two-component response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E LT I EG T+ EI   L +S  TV N+I+ ++ K   + R  A   A
Sbjct: 151 LSTREREILTLIGEGMTNREIGKRLYLSEKTVKNHISRLLSKLGVERRVQAAVIA 205


>gi|238899236|ref|YP_002924919.1| hypothetical protein HDEF_2226 [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466997|gb|ACQ68771.1| hypothetical protein, HTH domain protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 88

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +L+ RE+E L+    G T  EIA+ L IS +TV+NY  + M K
Sbjct: 18  KLSKREIEVLSMSRSGLTRSEIALELNISVSTVDNYFNNAMHK 60


>gi|209863937|gb|ACI88882.1| AlnR5 two component response regulator [Streptomyces sp. CM020]
          Length = 201

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   +LT REV+ L   + G+    IA  L +S  TV NY+ +I+ K   + R  A+  A
Sbjct: 136 GPAQQLTPREVDVLRLAAAGEDVRVIAKELHLSIGTVRNYLTTIVHKLGARNRVDAVRIA 195

Query: 241 VRNNIV 246
             N ++
Sbjct: 196 RDNGVI 201


>gi|87199644|ref|YP_496901.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135325|gb|ABD26067.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 244

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE+E    +  G+ +  IA  LGI+  TV  ++ +I+RK   K R+ A+A+A+
Sbjct: 161 LSEREIETFRRMCRGEPNKVIAQNLGITEATVKVHVKAILRKLHLKNRTQAVAWAL 216


>gi|86361169|ref|YP_473056.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86285271|gb|ABC94329.1| transcriptional regulator (activator) protein, LuxR family
           [Rhizobium etli CFN 42]
          Length = 241

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+ RE++CL   + G  + +I+  L IS + V  Y+AS  RK    T S A+A A
Sbjct: 180 HLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKA 235


>gi|49079490|gb|AAT49898.1| PA3045 [synthetic construct]
          Length = 208

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 180 WGKDFELTGR----EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +  D EL GR    EV  L ++S+G ++ +I+  + IS  TV+ Y A ++ K    +   
Sbjct: 137 YSDDVELLGRLSDREVSVLQYLSQGYSNKQISEQMFISNKTVSTYKARLLLKLNAGSLVD 196

Query: 236 AIAYAVRNNIV 246
            I +A RN ++
Sbjct: 197 LIEFAKRNTLI 207


>gi|17232127|ref|NP_488675.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133772|dbj|BAB76334.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 219

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE E L  I+ G  + EIA  L IS  TV N++ +I+ +   + R+ A   A
Sbjct: 153 DLTPREKEVLRLIAAGANNREIAQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 208


>gi|298244409|ref|ZP_06968215.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551890|gb|EFH85755.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I++  T+ EI   L +S  TV N++++I  K    TR+ AI  A
Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLVLSPKTVRNHVSNIFSKLQVATRAQAIIRA 213


>gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
 gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 246

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ +
Sbjct: 183 IDLTPREQSVLDLVAQGLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEH 242

Query: 244 NI 245
            +
Sbjct: 243 GL 244


>gi|260769447|ref|ZP_05878380.1| two component transcriptional regulator LuxR family [Vibrio
           furnissii CIP 102972]
 gi|260614785|gb|EEX39971.1| two component transcriptional regulator LuxR family [Vibrio
           furnissii CIP 102972]
          Length = 159

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  +S+G T+ EIA  + +S  T++ Y   +M K  + +    I +A RN +
Sbjct: 99  LSDREMMVLQQLSQGLTNKEIADKMILSNKTISTYKTRLMEKLGSSSLLELIEFAKRNGV 158

Query: 246 V 246
           V
Sbjct: 159 V 159


>gi|254498951|ref|ZP_05111654.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254351809|gb|EET10641.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 258

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +LT ++  CL  +++GK + EIA  + IS  TV +Y+A  M 
Sbjct: 199 QLTHQQAACLKLLAQGKAAKEIARTMNISYRTVEDYLAKTME 240


>gi|253688783|ref|YP_003017973.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755361|gb|ACT13437.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 210

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  ++ G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 150 LTERELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNMLRKLNVRSRVAA 200


>gi|271963218|ref|YP_003337414.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506393|gb|ACZ84671.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 197

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L   S G +  EIAV L ++  TV NY++S + K     R  AI  A
Sbjct: 137 LTERERDALALASRGASVGEIAVSLHLTEGTVRNYLSSAITKLGASNRITAIHAA 191


>gi|284990646|ref|YP_003409200.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063891|gb|ADB74829.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 220

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  +  G  + +IA  LGI  +TV  ++ S+ ++   + R+ A  +A
Sbjct: 145 ELTEREQEVLALVGHGLANKQIARRLGIRESTVKAHLTSVFQRIGVRDRTSATLWA 200


>gi|328886268|emb|CCA59507.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 203

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E L   +EG    EIA  L +S  TV NY+ S++ K   + R  AI  A+
Sbjct: 142 LTTRETEVLRLAAEGLEPIEIAGRLRLSLGTVRNYLTSVVTKLNARNRVDAIKIAM 197


>gi|320094467|ref|ZP_08026245.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319978600|gb|EFW10165.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 243

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTG+EVE L  I+ G T+ EI     +S  TV  ++  ++ KT  + R   +  A+R  +
Sbjct: 170 LTGKEVEILRLIARGLTNQEICDAQWVSMATVKTHVGHLLAKTGARDRVQLVLLALRAGL 229

Query: 246 V 246
           +
Sbjct: 230 M 230


>gi|302340328|ref|YP_003805534.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637513|gb|ADK82940.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 217

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +L+ RE E    + +G ++DEIA +L I+  TV N+I SI  K+    RS  I
Sbjct: 160 QLSRREREVYGLMLQGYSNDEIAEMLFIATQTVKNHIRSIYSKSGFHNRSDII 212


>gi|302337621|ref|YP_003802827.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634806|gb|ADK80233.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 214

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + EGK + EIA  L IS  TV ++I  I RK     R  A+  A    I
Sbjct: 152 LTTREKDVLRCMLEGKENKEIADELFISCETVKSHIKHIFRKLEVTNRVQAVQVAAEKKI 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|291452585|ref|ZP_06591975.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355534|gb|EFE82436.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 220

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 181 GKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G D  L+G   +E   L  I EG T+  I   L ++  T+ NY+++++ K   + RS A 
Sbjct: 149 GDDDRLSGLTEQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSALLAKLGMERRSQAA 208

Query: 238 AYAVR 242
           AY  R
Sbjct: 209 AYVAR 213


>gi|222112002|ref|YP_002554266.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|221731446|gb|ACM34266.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 210

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    +++G+T+ +IA  L +S  TV+ Y   +M K    + S    YA++N 
Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNK 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|182677301|ref|YP_001831447.1| two component LuxR family transcriptional regulator [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633184|gb|ACB93958.1| two component transcriptional regulator, LuxR family [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 229

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +L+ RE E L ++ EGK+  EIA  L +   TV N ++ + +K    T    I +AV
Sbjct: 155 DLSEREREVLHFMGEGKSLGEIARALSLGYKTVANIVSMLKQKLGVTTSPALIKFAV 211


>gi|241663249|ref|YP_002981609.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|309782519|ref|ZP_07677243.1| transcriptional regulator, LuxR family [Ralstonia sp. 5_7_47FAA]
 gi|240865276|gb|ACS62937.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12D]
 gi|308918856|gb|EFP64529.1| transcriptional regulator, LuxR family [Ralstonia sp. 5_7_47FAA]
          Length = 181

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+    H      LT RE +    + EGKTS +I   L IS  TV  Y A +M+K A  T
Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLEISPRTVEIYRARLMKKYAANT 170


>gi|94968001|ref|YP_590049.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550051|gb|ABF39975.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 227

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K+F LT RE+E L  I  G T+ EIA    +S +TV +++ +I  K    +R
Sbjct: 159 KNFGLTKREMEILGTIVAGFTNKEIAKKFNLSEDTVKHHLTNIFDKVGVSSR 210


>gi|91975755|ref|YP_568414.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91682211|gb|ABE38513.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
          Length = 318

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE+  L+W+  G    +IA  + IS  TV++++ +++RK   K RS A   A  N 
Sbjct: 241 LSYREMVVLSWLMIGMADRDIAAEMFISERTVHSHVTALLRKLKVKRRSQAAIIAALNR 299


>gi|152965318|ref|YP_001361102.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151359835|gb|ABS02838.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 249

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G   +LT RE+E L  ++ G ++ EIA    +S  TV  ++  ++ KT ++ R  A+  
Sbjct: 173 QGVPADLTPRELEVLECMAHGLSNGEIAARFVVSEATVKTHVGRVLAKTRSRDRVQAVVL 232

Query: 240 AVRNNIV 246
           A    +V
Sbjct: 233 AYAAGLV 239


>gi|329928715|ref|ZP_08282564.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937496|gb|EGG33914.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 216

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           F LT  E + +  I+EG ++ EIA  L +S  TV NY+  I+ K   + R+
Sbjct: 154 FGLTPAEKKVVALIAEGLSNKEIAAQLYLSEGTVKNYVTDILGKLNLRDRT 204


>gi|317501835|ref|ZP_07960020.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896725|gb|EFV18811.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 199

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 28/56 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E +  I  GKT  EIA  L IS  T+ N+I SI  K   K    A   A+
Sbjct: 135 LTDREAEIIKAIGTGKTKHEIAQELYISERTLYNHIQSIYDKLGAKNAIEAYNKAI 190


>gi|319791965|ref|YP_004153605.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594428|gb|ADU35494.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 237

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I++G ++ +IA  + +S NT+  +  SI RK A K+R+ A+  A+++ +
Sbjct: 176 LSPRELKVLRLIAQGWSNRQIAEAVYLSVNTIEFHAKSIYRKLAVKSRTQAVHEAMQHGL 235

Query: 246 V 246
           +
Sbjct: 236 L 236


>gi|221067196|ref|ZP_03543301.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|264678380|ref|YP_003278287.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|299532225|ref|ZP_07045619.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|220712219|gb|EED67587.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|262208893|gb|ACY32991.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|298719887|gb|EFI60850.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 217

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +LTGRE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T
Sbjct: 145 KLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANT 192


>gi|138894013|ref|YP_001124466.1| response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|134265526|gb|ABO65721.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Geobacillus thermodenitrificans
           NG80-2]
          Length = 531

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE++ L  + +G ++ EI+  L IS +TV N+I +I +K     RS  IA
Sbjct: 461 QLTSREMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 514


>gi|37521779|ref|NP_925156.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212777|dbj|BAC90151.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 224

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A +A  +    +H      LT RE E L+ IS+  T+ EIA  L IS  TV+++ A +M+
Sbjct: 145 AEEAGKYSKLAIH------LTEREREILSLISQEFTNIEIAERLFISPRTVDSHRARLMQ 198

Query: 227 KTATKTRSGAIAYAV 241
           K  T+  +G +  A+
Sbjct: 199 KLGTRNTAGLVRIAM 213


>gi|303258101|ref|ZP_07344109.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
 gi|302859120|gb|EFL82203.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
          Length = 222

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +LT RE   L  I  G+ + +IA  LGIS  TV  + ASIM KT + T
Sbjct: 152 KLTPREQHVLERIVSGRLNKQIAADLGISIKTVEAHRASIMDKTNSGT 199


>gi|298252261|ref|ZP_06976064.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546853|gb|EFH80721.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1056

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+ +E   L  ++ G+++ EIA  L IS NTV  ++ SI RK    +R  A A A R  +
Sbjct: 996  LSTQEQRVLALLAAGRSNPEIAETLIISVNTVKGHVKSIYRKLDVNSRIEASAAASRLKL 1055

Query: 246  V 246
            +
Sbjct: 1056 I 1056


>gi|320012915|gb|ADW07765.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 204

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  I +G ++ EIA  L +S +TV+ +++ ++ KT  ++R+ A   A RN 
Sbjct: 144 DLTEREIDVLRLIRDGLSNAEIAERLVVSLHTVSTHVSRVLTKTGCQSRAQAAVLA-RNT 202

Query: 245 I 245
           +
Sbjct: 203 L 203


>gi|254703683|ref|ZP_05165511.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 3 str. 686]
 gi|261754322|ref|ZP_05998031.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261744075|gb|EEY32001.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 213

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+
Sbjct: 149 LTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAV 200


>gi|256423489|ref|YP_003124142.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Chitinophaga
           pinensis DSM 2588]
 gi|256038397|gb|ACU61941.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Chitinophaga
           pinensis DSM 2588]
          Length = 196

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 22/28 (78%)

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMR 226
           EGK+ DE++++LGIS +TVNN+I    R
Sbjct: 146 EGKSHDEVSLLLGISPSTVNNHIVKATR 173


>gi|170079118|ref|YP_001735756.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886787|gb|ACB00501.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 226

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 41/62 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + ++++++G ++ EIA  L +S+ T+ +++++++ KT+   R+    +A+ + 
Sbjct: 165 ELTPTETKVVSFVAQGLSNREIAEKLNVSQRTIESHVSNMLNKTSLNNRTELARWAMDSR 224

Query: 245 IV 246
           +V
Sbjct: 225 LV 226


>gi|134099110|ref|YP_001104771.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133911733|emb|CAM01846.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 209

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE++ L  +SEG    +IA  L  S  TV N +     +     R+ A++YA+R+ +
Sbjct: 149 VTNREIDVLGLVSEGNELKDIAQKLHFSERTVKNILYQFTSRFNLHNRAHAVSYAIRSGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|56476467|ref|YP_158056.1| two-component response regulator [Aromatoleum aromaticum EbN1]
 gi|56312510|emb|CAI07155.1| Two-component response regulator [Aromatoleum aromaticum EbN1]
          Length = 218

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE E L  +  G +S E+A ILGIS  TV  +   +M K   K+    I  A+
Sbjct: 146 LSQREKEILDLVVGGNSSKEVARILGISHKTVEAHRGRLMSKLGVKSLGELIQLAM 201


>gi|119775211|ref|YP_927951.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767711|gb|ABM00282.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 238

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           GK  +LT ++   L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+
Sbjct: 165 GKLADLTPQQYRVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV 221


>gi|294788302|ref|ZP_06753545.1| nitrate/nitrite response regulator protein NarL [Simonsiella
           muelleri ATCC 29453]
 gi|294483733|gb|EFG31417.1| nitrate/nitrite response regulator protein NarL [Simonsiella
           muelleri ATCC 29453]
          Length = 220

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVIL 210
           R +  D ++   + A    ++ + ++   G   + LT RE+E L  ++ G ++  IA  L
Sbjct: 120 RAVDGDNVFSPEMTARLVQSLIRPHNAGTGSALDTLTPRELEILGHLAAGHSNKIIARQL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++  T+  ++ +I+RK    +R  A  YAV++ +
Sbjct: 180 DLAEFTIKVHVQNILRKLELSSRVQAAVYAVQHKV 214


>gi|312194794|ref|YP_004014855.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226130|gb|ADP78985.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 219

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  RE E    + EG ++ +IA  LG+S  TV NY++S++ K    +R+ A   A + +
Sbjct: 147 LGDREREVFHLLGEGLSNRQIAGRLGLSDKTVKNYVSSMLSKLRLTSRTQAAILATKTD 205


>gi|290962909|ref|YP_003494091.1| response regulator [Streptomyces scabiei 87.22]
 gi|260652435|emb|CBG75568.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 288

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  ++ G T+ +I+  L I   TV  Y+ S MRK  T TR  A+  A R  +
Sbjct: 227 LSPRELDVLAAVAAGCTNLDISGRLDIGLETVKGYLRSAMRKLGTTTRFEAVTAARRAGL 286

Query: 246 V 246
           +
Sbjct: 287 L 287


>gi|167622824|ref|YP_001673118.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167352846|gb|ABZ75459.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 211

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE+E L  ++EG+++  +A  L IS  TV  ++ +++RK   K+R+
Sbjct: 152 LTPRELEILQHLAEGQSNRIVAEQLHISEGTVKVHVKNLLRKANAKSRT 200


>gi|218780409|ref|YP_002431727.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761793|gb|ACL04259.1| two component transcriptional regulator, LuxR family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 212

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  ++ G T+ EIA    IS  TV+ Y A +++K   +  +    +A++NN+
Sbjct: 150 LSKRELQVLRHLASGHTNREIADSYHISVKTVDTYRARLLKKLNLRNNADISRFAIQNNL 209

Query: 246 V 246
           +
Sbjct: 210 I 210


>gi|146280789|ref|YP_001170942.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501]
 gi|145568994|gb|ABP78100.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501]
          Length = 218

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+   +G ++ EIA  L +S +T+ ++I +++RK     R+ A AY +R+++
Sbjct: 152 LTLREREILSLAGKGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNRAEA-AYLLRSHL 210


>gi|157960657|ref|YP_001500691.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157845657|gb|ABV86156.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 209

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE+E L  ++EG+++  +A  L IS  TV  ++ +++RK   K+R+
Sbjct: 152 LTPRELEILQHLAEGQSNRIVAEQLHISEGTVKVHVKNLLRKANAKSRT 200


>gi|11465487|ref|NP_045122.1| regulatory component of sensory transduction system [Cyanidium
           caldarium]
 gi|6466390|gb|AAF12972.1|AF022186_95 unknown [Cyanidium caldarium]
          Length = 209

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT +E   L  I++G  + +I  +  I    V NY++ +++K+ +  RS  +  ++
Sbjct: 144 KPIKLTEKEQCILNLIAQGVVNKKIKKLTFIGARYVENYVSKMLKKSQSNNRSELVIKSI 203

Query: 242 RNNIV 246
           +N IV
Sbjct: 204 KNKIV 208


>gi|325283032|ref|YP_004255573.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324314841|gb|ADY25956.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 219

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L   + G ++ EIA  LGIS  TV  ++ ++  K    +R+ A+   +R  
Sbjct: 153 DLSPRELEVLRAAARGGSNKEIARALGISPRTVQVHLGNVFSKLNVGSRTEAVLAGIRRG 212


>gi|310640405|ref|YP_003945163.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245355|gb|ADO54922.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 199

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE   L  I++GK + EIA  L ++  TV NYI+ I+ K     R  AI
Sbjct: 138 LTEREKTVLALIADGKNTKEIAGELFLTTGTVRNYISVILDKLGVSNRIEAI 189


>gi|308067670|ref|YP_003869275.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
 gi|305856949|gb|ADM68737.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
          Length = 199

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE   L  I++GK + EIA  L ++  TV NYI+ I+ K     R  AI
Sbjct: 138 LTEREKTVLALIADGKNTKEIAGELYLTTGTVRNYISVILDKLGVSNRIEAI 189


>gi|302391963|ref|YP_003827783.1| LuxR family transcriptional regulator [Acetohalobium arabaticum DSM
           5501]
 gi|302204040|gb|ADL12718.1| transcriptional regulator, LuxR family [Acetohalobium arabaticum
           DSM 5501]
          Length = 259

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ++ + RE+E    +  G  ++EIA  L IS NTV  ++ SI RK    +R+
Sbjct: 196 YKFSNREIEVAKLVVSGLNNEEIAGELFISINTVKKHLYSIFRKIGVNSRA 246


>gi|299138245|ref|ZP_07031424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298599491|gb|EFI55650.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 162

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +T RE+E LT I+ G ++ EIA  L +S NTV  + A    K     R+ A+
Sbjct: 101 ITARELETLTLIARGFSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAV 152


>gi|227327331|ref|ZP_03831355.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 224

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            + RE E L W S GKT  EIA+IL I  +TV  +I ++++ +A
Sbjct: 180 FSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKNSA 223


>gi|269925647|ref|YP_003322270.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789307|gb|ACZ41448.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 217

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L+ ++ G T+ EIA  L ++  TV +++ +I RK   K R  A++ A
Sbjct: 156 LSERELEILSLMASGHTNSEIARELYVAVGTVKSHVNNIYRKLGAKNRVEALSRA 210


>gi|297193917|ref|ZP_06911315.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720280|gb|EDY64188.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 231

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT REVE L  ++EG+ +  IAV +GI+ +T   ++  ++ K    +R
Sbjct: 156 LTPREVEVLVRVAEGEDTRLIAVGMGIAPSTARTHVQRVLMKLGVGSR 203


>gi|220921119|ref|YP_002496420.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219945725|gb|ACL56117.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 245

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A  A+      +  G+  ELT R+ + L  + EGK++ EIA  L +   TV  ++A+++R
Sbjct: 166 ARPASEAAEGGLRGGRSVELTPRQRDVLALLVEGKSNKEIARQLQLGEGTVKVHMAALLR 225

Query: 227 KTATK 231
               +
Sbjct: 226 SLGVQ 230


>gi|84622783|ref|YP_450155.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366723|dbj|BAE67881.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 552

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R  A+A A
Sbjct: 479 RELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSRESALAQA 530


>gi|5834774|emb|CAA74720.1| response regulatory protein [Streptomyces reticuli]
          Length = 217

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  +S G ++  IA  L IS  TV  ++  I  K    TR+GA+A A
Sbjct: 156 LTPREQDILAHLSRGLSNHAIARALYISEATVKTHLRRIYDKLGVDTRAGAVAVA 210


>gi|17987890|ref|NP_540524.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M]
 gi|23501222|ref|NP_697349.1| LuxR family DNA-binding response regulator [Brucella suis 1330]
 gi|62289309|ref|YP_221102.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|82699239|ref|YP_413813.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|161618298|ref|YP_001592185.1| two component LuxR family transcriptional regulator [Brucella canis
           ATCC 23365]
 gi|163842602|ref|YP_001627006.1| two component LuxR family transcriptional regulator [Brucella suis
           ATCC 23445]
 gi|189023562|ref|YP_001934330.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225626842|ref|ZP_03784881.1| glycerol metabolism activator [Brucella ceti str. Cudo]
 gi|225851861|ref|YP_002732094.1| LuxR family two component transcriptional regulator [Brucella
           melitensis ATCC 23457]
 gi|237814800|ref|ZP_04593798.1| glycerol metabolism activator [Brucella abortus str. 2308 A]
 gi|254688629|ref|ZP_05151883.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 6 str. 870]
 gi|254696752|ref|ZP_05158580.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701135|ref|ZP_05162963.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 5 str. 513]
 gi|254707944|ref|ZP_05169772.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M163/99/10]
 gi|254709478|ref|ZP_05171289.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis B2/94]
 gi|254718509|ref|ZP_05180320.1| two component transcriptional regulator, LuxR family protein
           [Brucella sp. 83/13]
 gi|254729661|ref|ZP_05188239.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 4 str. 292]
 gi|256030972|ref|ZP_05444586.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M292/94/1]
 gi|256044043|ref|ZP_05446954.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060463|ref|ZP_05450634.1| two component transcriptional regulator, LuxR family protein
           [Brucella neotomae 5K33]
 gi|256112839|ref|ZP_05453760.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|256159018|ref|ZP_05456855.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M490/95/1]
 gi|256254376|ref|ZP_05459912.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti B1/94]
 gi|256256876|ref|ZP_05462412.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 9 str. C68]
 gi|256264624|ref|ZP_05467156.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256368775|ref|YP_003106281.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260168107|ref|ZP_05754918.1| DNA-binding response regulator, LuxR family protein [Brucella sp.
           F5/99]
 gi|260545936|ref|ZP_05821677.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260563402|ref|ZP_05833888.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260567065|ref|ZP_05837535.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260754100|ref|ZP_05866448.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757320|ref|ZP_05869668.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761144|ref|ZP_05873487.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883126|ref|ZP_05894740.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261221537|ref|ZP_05935818.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261315435|ref|ZP_05954632.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317000|ref|ZP_05956197.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261324454|ref|ZP_05963651.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751668|ref|ZP_05995377.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261757557|ref|ZP_06001266.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|265983478|ref|ZP_06096213.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|265988037|ref|ZP_06100594.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265990454|ref|ZP_06103011.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994282|ref|ZP_06106839.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265997500|ref|ZP_06110057.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|294851704|ref|ZP_06792377.1| two component LuxR family transcriptional regulator [Brucella sp.
           NVSL 07-0026]
 gi|297247726|ref|ZP_06931444.1| two component LuxR family transcriptional regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306838316|ref|ZP_07471162.1| two component LuxR family transcriptional regulator [Brucella sp.
           NF 2653]
 gi|306842417|ref|ZP_07475069.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306844955|ref|ZP_07477536.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO1]
 gi|17983624|gb|AAL52788.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M]
 gi|23347103|gb|AAN29264.1| DNA-binding response regulator, LuxR family [Brucella suis 1330]
 gi|62195441|gb|AAX73741.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1
           str. 9-941]
 gi|82615340|emb|CAJ10301.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Brucella melitensis biovar Abortus 2308]
 gi|161335109|gb|ABX61414.1| two component transcriptional regulator, LuxR family [Brucella
           canis ATCC 23365]
 gi|163673325|gb|ABY37436.1| two component transcriptional regulator, LuxR family [Brucella suis
           ATCC 23445]
 gi|189019134|gb|ACD71856.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225618499|gb|EEH15542.1| glycerol metabolism activator [Brucella ceti str. Cudo]
 gi|225640226|gb|ACO00140.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis ATCC 23457]
 gi|237789637|gb|EEP63847.1| glycerol metabolism activator [Brucella abortus str. 2308 A]
 gi|255998933|gb|ACU47332.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260097343|gb|EEW81218.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260153418|gb|EEW88510.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156583|gb|EEW91663.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260667638|gb|EEX54578.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671576|gb|EEX58397.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674208|gb|EEX61029.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872654|gb|EEX79723.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260920121|gb|EEX86774.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261296223|gb|EEX99719.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300434|gb|EEY03931.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261304461|gb|EEY07958.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737541|gb|EEY25537.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|261741421|gb|EEY29347.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262551968|gb|EEZ07958.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|262765395|gb|EEZ11184.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001238|gb|EEZ13813.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094991|gb|EEZ18699.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660234|gb|EEZ30495.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|264662070|gb|EEZ32331.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|294820293|gb|EFG37292.1| two component LuxR family transcriptional regulator [Brucella sp.
           NVSL 07-0026]
 gi|297174895|gb|EFH34242.1| two component LuxR family transcriptional regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306274587|gb|EFM56376.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO1]
 gi|306287439|gb|EFM58916.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306406607|gb|EFM62840.1| two component LuxR family transcriptional regulator [Brucella sp.
           NF 2653]
 gi|326408357|gb|ADZ65422.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326538072|gb|ADZ86287.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis M5-90]
          Length = 213

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+
Sbjct: 149 LTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAV 200


>gi|311743852|ref|ZP_07717658.1| two component system response regulator [Aeromicrobium marinum DSM
           15272]
 gi|311312982|gb|EFQ82893.1| two component system response regulator [Aeromicrobium marinum DSM
           15272]
          Length = 218

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L  ++ G+T+ EIA  L I+ +TV  ++A++M K   + R
Sbjct: 156 LTEREEEVLLTVARGRTNAEIADELHITLSTVKTHVAALMNKLGARNR 203


>gi|257142596|ref|ZP_05590858.1| transcription regulator LuxR family protein [Burkholderia
           thailandensis E264]
          Length = 255

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   +D  ELT RE + L +++  KT+ +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 142 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 201

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 202 NELIDLAA 209


>gi|209518473|ref|ZP_03267295.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501106|gb|EEA01140.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 262

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           LT RE   L  I+EG+T+ ++   L +S  T+  Y AS+M K A
Sbjct: 156 LTARERSVLKLIAEGRTNRQVGEYLNLSPKTIEKYRASVMHKLA 199


>gi|154486396|ref|ZP_02027803.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis
           L2-32]
 gi|154084259|gb|EDN83304.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis
           L2-32]
          Length = 221

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + ++  ++G    EIA  L IS NTV  ++  I++K   KT   A+A  VR++
Sbjct: 161 LTVREEQIISLCADGMLDREIAERLDISENTVRKHMQGILKKLNCKTARQAVALWVRSH 219


>gi|38637927|ref|NP_942901.1| nitrate/nitrite response regulator [Ralstonia eutropha H16]
 gi|32527265|gb|AAP86015.1| nitrate/nitrite response regulator [Ralstonia eutropha H16]
          Length = 220

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G+++ EIA  LG++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 157 LTVREREIVQELARGESNKEIARTLGVAASTVKIHVQNILKKLNLASRVQVAVYAVEHRL 216


>gi|77361820|ref|YP_341395.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76876731|emb|CAI87953.1| putative transcriptional regulator, LuxR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 218

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 152 RIILRDRLW---EIGLLAAYQANMFKSYDVH--WGKDFE---LTGREVECLTWISEGKTS 203
           R++L D+LW   +I   A  +   F    +H     D E   LT RE   ++ +S G  +
Sbjct: 113 RLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSNGSKN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            EIA  L IS +TV  ++ S  RKT  + R   +++A
Sbjct: 173 KEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWA 209


>gi|327439322|dbj|BAK15687.1| DNA-binding HTH domain-containing protein [Solibacillus silvestris
           StLB046]
          Length = 73

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + +  ++ EI+  LGIS  TV N+I++ ++K    +R+ AI   +R
Sbjct: 10  LTKREREIFELLIKDYSTREISTKLGISEKTVRNHISNTIQKLGVSSRTQAILELLR 66


>gi|282896939|ref|ZP_06304945.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198348|gb|EFA73238.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 210

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT  E++ + +++ G  + EIA  L +S+ TV +++++++ KT    R+    +A+ 
Sbjct: 147 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 206

Query: 243 NNI 245
           N +
Sbjct: 207 NQM 209


>gi|270294227|ref|ZP_06200429.1| transcriptional regulator [Bacteroides sp. D20]
 gi|270275694|gb|EFA21554.1| transcriptional regulator [Bacteroides sp. D20]
          Length = 254

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           D +L+ RE E L  I +G  S EIA  LG+S  TVNN+  +I+ K
Sbjct: 190 DKQLSNREKEILRLIRQGFLSKEIAHQLGVSIYTVNNHRKNILSK 234


>gi|262173251|ref|ZP_06040928.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
 gi|261890609|gb|EEY36596.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
          Length = 237

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D +LT RE E L  +  GK    IA ++GIS  TV  Y A +  K    ++   I  A
Sbjct: 151 GADLKLTARESEVLFLLLYGKKPQHIARVMGISIKTVEGYEAKLRSKFGALSKDQLIDLA 210

Query: 241 V 241
           +
Sbjct: 211 L 211


>gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 246

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ +
Sbjct: 183 IDLTPREQSVLDLVAQGLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEH 242

Query: 244 NI 245
            +
Sbjct: 243 GL 244


>gi|145594340|ref|YP_001158637.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303677|gb|ABP54259.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 230

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G ++ EIA  L +   TV  +++ ++ K   + R  A+ +A  + 
Sbjct: 165 DLTPREHEVLVLVASGASNAEIAANLRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHG 224

Query: 245 IV 246
           +V
Sbjct: 225 VV 226


>gi|120401374|ref|YP_951203.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954192|gb|ABM11197.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 392

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 157 DRLWEIGLLA--AYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGIS 213
           D L E GL      +A+     D   G+    LT RE +    +  G ++ EIA  L I+
Sbjct: 302 DELCESGLDTPRGAEADRCGDTDGQTGRPPVTLTEREADVFDLMVTGASNQEIADRLVIT 361

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             TV +++  I+RK     R+ AIA+A+   
Sbjct: 362 EGTVKSHVKHILRKYGAVNRAQAIAWALNGG 392


>gi|330811339|ref|YP_004355801.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379447|gb|AEA70797.1| Putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 208

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y   ++ K   ++    I  A RN +
Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|299069878|emb|CBJ41160.1| putative transcription regulator protein LuxR [Ralstonia
           solanacearum CMR15]
          Length = 232

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           F LT RE +    ++ G     IA  LGISR+TV  ++  + RKT T 
Sbjct: 169 FHLTRREADVADLLARGAGPALIASTLGISRDTVRTHLKHVYRKTNTH 216


>gi|229492601|ref|ZP_04386404.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
 gi|229320587|gb|EEN86405.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
          Length = 358

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E LT+++ G ++ EI   L  S  TV  ++  I+ K    +R  A   A    I
Sbjct: 294 LTARELEVLTYLARGLSNAEIGRELHASHRTVATHVERILDKLDCHSRVAAAGIATAEGI 353

Query: 246 V 246
           V
Sbjct: 354 V 354


>gi|229821513|ref|YP_002883039.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567426|gb|ACQ81277.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 232

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 165 LAAYQANMFKSY--DVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LA +  + F +   DV  G + + LT RE E +  I+ G T  E+A  L IS  TV  ++
Sbjct: 148 LAGFVLDAFGAIGGDVATGDELDKLTAREREVMRLIARGYTYREVASELFISIKTVETHV 207

Query: 222 ASIMRKTATKTR 233
           ++++RK    +R
Sbjct: 208 SAVLRKLQLSSR 219


>gi|145599420|ref|YP_001163496.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides F]
 gi|145211116|gb|ABP40523.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides F]
          Length = 209

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 12/131 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180
           G D R   LT   AR  +  M+       +L+D   EI L     AA   N+F    + +
Sbjct: 76  GSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQY 135

Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 136 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195

Query: 233 RSGAIAYAVRN 243
           R  A    + N
Sbjct: 196 RVAATIMYLEN 206


>gi|126650765|ref|ZP_01722981.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592430|gb|EAZ86448.1| two-component response regulator [Bacillus sp. B14905]
          Length = 201

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L  RE+  L  + EG T+ EI+  L +++ T+ NY+++ ++K   ++R  A   A
Sbjct: 141 LNEREIAVLQLVKEGLTTHEISKQLFLTKGTIRNYLSTTIQKLQVESRQQAAQIA 195


>gi|3184128|emb|CAA05049.1| TDIR protein [Thauera aromatica]
          Length = 227

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE+E L  +  G +S EIA +LGIS  TV  +   I+ K   K+    + + +R +
Sbjct: 148 LSQREMEILDKVVAGSSSKEIAKLLGISYKTVEAHRGRIISKLGLKSTGDLMHFVMRGS 206


>gi|282878907|ref|ZP_06287671.1| hemerythrin HHE cation binding domain protein [Prevotella buccalis
           ATCC 35310]
 gi|281298906|gb|EFA91311.1| hemerythrin HHE cation binding domain protein [Prevotella buccalis
           ATCC 35310]
          Length = 313

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA+  N+
Sbjct: 246 LSDREKEVVISLVQGMTNKEIAEHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVTNL 305

Query: 246 V 246
           V
Sbjct: 306 V 306


>gi|282898699|ref|ZP_06306687.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196567|gb|EFA71476.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 216

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE+E    +++G T+ EIA  L IS+NTV   +  + +K     R+  +A
Sbjct: 161 LTARELEIAKLVAQGLTNGEIASQLWISQNTVKQSLKRMFKKLGVSARAEMVA 213


>gi|300779752|ref|ZP_07089608.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533862|gb|EFK54921.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 220

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT T  R
Sbjct: 159 KLTRRELEVLRLLARGYTYKEIASELFISVKTVETHASNVLRKTQTSNR 207


>gi|256422989|ref|YP_003123642.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256037897|gb|ACU61441.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 220

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +L+  E   +  I+EG ++ EIA  L IS  TV N+  +I +K      +  I YA++N
Sbjct: 153 KLSKTEFRVMQMIAEGMSTKEIAQSLNISIKTVENHRHNISKKLNLTGHNSLIKYAIKN 211


>gi|253699733|ref|YP_003020922.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251774583|gb|ACT17164.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 216

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  I+EG  +   A  L I+  TV+ +   IM+K   ++ +    YA+R
Sbjct: 149 EVPLTPREREVLQLIAEGNNAKNAAYQLNINVKTVDTHRQQIMKKLKMRSVAELTKYAIR 208

Query: 243 NNIV 246
             ++
Sbjct: 209 EGLI 212


>gi|190149328|ref|YP_001967853.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262641|ref|ZP_07544271.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914459|gb|ACE60711.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872064|gb|EFN03778.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 209

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    +R  A
Sbjct: 149 LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|188995237|ref|YP_001929489.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC
           33277]
 gi|188594917|dbj|BAG33892.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC
           33277]
          Length = 199

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  + +G T+ EIA  L +S +TV  +  +I +K    + SG   YA+ N +
Sbjct: 132 LTNREKEIVVGVVKGMTNKEIAEELFLSTHTVITHRRNIAKKLQIHSPSGLTIYAIMNKL 191

Query: 246 V 246
           V
Sbjct: 192 V 192


>gi|153870575|ref|ZP_01999948.1| regulatory protein, LuxR [Beggiatoa sp. PS]
 gi|152072960|gb|EDN70053.1| regulatory protein, LuxR [Beggiatoa sp. PS]
          Length = 210

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E    ++EGK+ +EIA IL +S  TV ++   I +K    + S     A+R  
Sbjct: 147 QLSPREFEVFLLLAEGKSVNEIAEILTLSSKTVGHHYTHIKKKLKISSISELTRLAIRGG 206

Query: 245 IV 246
           ++
Sbjct: 207 VL 208


>gi|320532007|ref|ZP_08032900.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135771|gb|EFW27826.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 203

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L   + G  + EIA  L +   TV NY++S + KT  + R+ A   A  N 
Sbjct: 143 LTDREKEVLLAAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201


>gi|165975516|ref|YP_001651109.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250537|ref|ZP_07336734.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251881|ref|ZP_07338052.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244860|ref|ZP_07526959.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247035|ref|ZP_07529089.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249257|ref|ZP_07531254.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251580|ref|ZP_07533487.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253814|ref|ZP_07535668.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256079|ref|ZP_07537867.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258270|ref|ZP_07540013.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260511|ref|ZP_07542205.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|165875617|gb|ABY68665.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649311|gb|EFL79496.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650525|gb|EFL80684.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854305|gb|EFM86511.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856487|gb|EFM88636.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858781|gb|EFM90840.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861044|gb|EFM93050.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863298|gb|EFM95238.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865501|gb|EFM97396.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867730|gb|EFM99575.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869823|gb|EFN01606.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 209

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    +R  A
Sbjct: 149 LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|53712701|ref|YP_098693.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60680860|ref|YP_211004.1| putative transcriptional regulatory protein [Bacteroides fragilis
           NCTC 9343]
 gi|253563324|ref|ZP_04840781.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|265762790|ref|ZP_06091358.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|52215566|dbj|BAD48159.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60492294|emb|CAH07059.1| putative transcriptional regulatory protein [Bacteroides fragilis
           NCTC 9343]
 gi|251947100|gb|EES87382.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|263255398|gb|EEZ26744.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|301162406|emb|CBW21951.1| putative transcriptional regulatory protein [Bacteroides fragilis
           638R]
          Length = 225

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 164 LLAAYQANMFKSYDVHW---GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           LL +   N+  +  VH     +D  LT  E   L  I+ GKT+ EIA    +S +T+N++
Sbjct: 133 LLLSGSGNVNTASAVHTFVPQEDRLLTPTEKIILKEIASGKTTKEIAAEKHLSFHTINSH 192

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
             +I RK        A  YA+R  IV
Sbjct: 193 RKNIFRKLGVNNVHEATKYAMRAGIV 218


>gi|15607336|ref|NP_214709.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Rv]
 gi|31791373|ref|NP_853866.1| LuxR family two component transcriptional regulator [Mycobacterium
           bovis AF2122/97]
 gi|121636107|ref|YP_976330.1| LuxR family two component transcriptional regulator [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148659959|ref|YP_001281482.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|224988580|ref|YP_002643267.1| putative two component transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|260185058|ref|ZP_05762532.1| two component system transcriptional regulator, luxR-family protein
           [Mycobacterium tuberculosis CPHL_A]
 gi|260203340|ref|ZP_05770831.1| two component system transcriptional regulator, luxR-family protein
           [Mycobacterium tuberculosis K85]
 gi|289445726|ref|ZP_06435470.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis CPHL_A]
 gi|289568096|ref|ZP_06448323.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis T17]
 gi|289572775|ref|ZP_06453002.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis K85]
 gi|289748671|ref|ZP_06508049.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T92]
 gi|289756260|ref|ZP_06515638.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289760298|ref|ZP_06519676.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|289764311|ref|ZP_06523689.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|294994668|ref|ZP_06800359.1| two component system transcriptional regulator, luxR-family protein
           [Mycobacterium tuberculosis 210]
 gi|297632675|ref|ZP_06950455.1| two component system transcriptional regulator, luxR-family protein
           [Mycobacterium tuberculosis KZN 4207]
 gi|297729649|ref|ZP_06958767.1| two component system transcriptional regulator, luxR-family protein
           [Mycobacterium tuberculosis KZN R506]
 gi|298527587|ref|ZP_07014996.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313656975|ref|ZP_07813855.1| two component system transcriptional regulator, luxR-family protein
           [Mycobacterium tuberculosis KZN V2475]
 gi|2909593|emb|CAA17317.1| POSSIBLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
           LUXR-FAMILY) [Mycobacterium tuberculosis H37Rv]
 gi|31616958|emb|CAD93065.1| PUTATIVE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
           LUXR-FAMILY) [Mycobacterium bovis AF2122/97]
 gi|121491754|emb|CAL70216.1| Putative two component transcriptional regulatory protein (probably
           luxR-family) [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148504111|gb|ABQ71920.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|224771693|dbj|BAH24499.1| putative two component transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418684|gb|EFD15885.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis CPHL_A]
 gi|289537206|gb|EFD41784.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis K85]
 gi|289541849|gb|EFD45498.1| two component system transcriptional regulator, luxR-family
           [Mycobacterium tuberculosis T17]
 gi|289689258|gb|EFD56687.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T92]
 gi|289696847|gb|EFD64276.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289711817|gb|EFD75833.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|289715862|gb|EFD79874.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|298497381|gb|EFI32675.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 211

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  REV  L  +++G ++ ++AV L     T+ N +  I+ +   + R+ A+A+A+R  +
Sbjct: 151 LAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|146279618|ref|YP_001169776.1| hypothetical protein Rsph17025_3602 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557859|gb|ABP72471.1| hypothetical protein Rsph17025_3602 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 374

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +  ++D+ W + F L+ RE E    +  G+T  + A    +S+ T+ N + S++RKT T 
Sbjct: 298 LLLTHDILW-RTFGLSARESELAMSLITGETIPDQAQRRKMSKQTLRNQMVSVLRKTETS 356

Query: 232 TRSGAIAYAVR 242
            +S  +A   R
Sbjct: 357 RQSQLVALLTR 367


>gi|317122209|ref|YP_004102212.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315592189|gb|ADU51485.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 280

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT I++G T+ EIA  L IS  TV  + ++IM K           YA+R+ +
Sbjct: 216 LTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHGL 275

Query: 246 V 246
           +
Sbjct: 276 I 276


>gi|282859563|ref|ZP_06268668.1| hemerythrin HHE cation binding domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282587791|gb|EFB92991.1| hemerythrin HHE cation binding domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 318

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  + +G ++ EIA  L IS NTV  +  +I +K    + +G   YA+ NN+
Sbjct: 251 LSDREKDVIVALVQGMSNKEIAEHLCISTNTVITHRRNIAKKLKIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|302551299|ref|ZP_07303641.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468917|gb|EFL32010.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT +  G  + EIA  LG+S  T   +++ IM K A + R+  +  A  + +
Sbjct: 155 LSDREREVLTLVGRGLNNTEIAESLGLSPLTAKTHVSRIMGKLAARDRAQLVIVAYESGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|91789884|ref|YP_550836.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699109|gb|ABE45938.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 208

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+ECL+   +G+T+ E   IL  S  TVN ++++ M K     +  AI  A
Sbjct: 148 LSPRELECLSLAFQGRTARESGDILVCSERTVNFHLSNAMAKLKVDNKLAAIQRA 202


>gi|325002788|ref|ZP_08123900.1| two component transcriptional regulator, LuxR family protein
           [Pseudonocardia sp. P1]
          Length = 225

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  +  G T+ EIA  L IS  T   ++  ++ K   + R   +  A    +
Sbjct: 161 LTGREREVLALVGRGHTNGEIAAQLVISPATARTHVGRLLTKLGARDRVQLVVIAHETGL 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|297156374|gb|ADI06086.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 16/106 (15%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF------ELTGREVECLT 195
           IGL+ +  +G  +L          AA +  +  S D H  +D        LT RE E L 
Sbjct: 115 IGLVRVAAEGHTVLSP--------AAARRLVAASSDGHSARDRARRLVESLTEREAEVLA 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTA--TKTRSGAIAY 239
            + EG ++ +I   L +S  T+  Y++ ++ K     +T++G IA+
Sbjct: 167 GLGEGLSNAQIGARLYLSEATIKGYVSRLLDKLGCVNRTQAGLIAH 212


>gi|258592283|emb|CBE68592.1| Two component transcriptional regulator, LuxR family [NC10
           bacterium 'Dutch sediment']
          Length = 222

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  + EG T+ E A  LG++   V   +  + +KT  +TRS  +  A+  +
Sbjct: 157 LTEREEQVLQAVFEGLTNKETAARLGVTEGAVKATLQHLFQKTGVRTRSQLVRVAIEGS 215


>gi|323528532|ref|YP_004230684.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323385534|gb|ADX57624.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 210

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +F++Y         L+ RE + L  ++ GK+ +EIA    +S  T++ +   +M+K    
Sbjct: 134 VFETYSGDAPPHEILSDREFQVLQMLALGKSLNEIADAFALSAKTISTHKMRLMQKLGLA 193

Query: 232 TRSGAIAYAVRNNIV 246
             +  I YA+R+ +V
Sbjct: 194 NNADLIRYAIRHGLV 208


>gi|237801066|ref|ZP_04589527.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023923|gb|EGI03980.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 208

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN++V
Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNSLV 208


>gi|226364089|ref|YP_002781871.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242578|dbj|BAH52926.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 394

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ELT RE E    ++ GK++ EIA  L IS  TV +++  I+RK     RS AI
Sbjct: 325 ELTMREREVFQLLAAGKSNTEIADELVISVFTVKSHVKKILRKLGAMNRSEAI 377


>gi|223936168|ref|ZP_03628081.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895030|gb|EEF61478.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G+ + ++A  LGIS  T+  +   +M K      +G   YA+   I
Sbjct: 156 LTPREAEVLVLIAKGQPNKQMASELGISIKTIEKHRQQVMNKLNIHDIAGLTRYAISKGI 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|134099153|ref|YP_001104814.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911776|emb|CAM01889.1| transcriptional regulator, LuxR family [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 209

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE++ L  +SEG     IA  L  S  TV N + +   +     R+ A++YA+R+ +
Sbjct: 149 ITNREIDVLRMVSEGFDLKHIAQELHFSERTVKNVLYNFTNRFNLHNRAHAVSYAIRSGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|227818570|ref|YP_002822541.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36958825|gb|AAQ87250.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234]
 gi|227337569|gb|ACP21788.1| transcriptional regulator, LuxR family [Sinorhizobium fredii
           NGR234]
          Length = 240

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT ++ + L  +  G  + +IA  L I+  TV  ++ +IMRK   +TR  A+ +A
Sbjct: 174 LTRQQAKILQLVCAGLMNKQIAYELSIAETTVKAHVTAIMRKLGVQTRMQAVLFA 228


>gi|91787783|ref|YP_548735.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91697008|gb|ABE43837.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 184

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 25/48 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELT RE E    + +G TS EI   L IS  TV  Y A +MRK    T
Sbjct: 126 ELTAREREVAAHLMDGMTSKEIGRALVISHRTVEIYRARLMRKYKAST 173


>gi|78066966|ref|YP_369735.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967711|gb|ABB09091.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 395

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT  E E    + +G T DE A   GI++NT   ++  I  KT   TR   +   + N
Sbjct: 331 FRLTPMETEIALLLVDGLTLDEAAAATGITKNTARAHLRGIFAKTGA-TRQAVLVKTLLN 389

Query: 244 NIV 246
           ++V
Sbjct: 390 SVV 392


>gi|34540945|ref|NP_905424.1| LuxR family transcriptional regulator [Porphyromonas gingivalis
           W83]
 gi|34397260|gb|AAQ66323.1| transcriptional regulator, LuxR family [Porphyromonas gingivalis
           W83]
          Length = 199

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  + +G T+ EIA  L +S +TV  +  +I +K    + SG   YA+ N +
Sbjct: 132 LTNREKEIVVGVVKGMTNKEIAEELFLSTHTVITHRRNIAKKLQIHSPSGLTIYAIMNKL 191

Query: 246 V 246
           V
Sbjct: 192 V 192


>gi|51597079|ref|YP_071270.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808226|ref|YP_652142.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Antiqua]
 gi|108811507|ref|YP_647274.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|149365098|ref|ZP_01887133.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CA88-4125]
 gi|162418673|ref|YP_001607184.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Angola]
 gi|165926835|ref|ZP_02222667.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165935928|ref|ZP_02224498.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011211|ref|ZP_02232109.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212574|ref|ZP_02238609.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167422709|ref|ZP_02314462.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424621|ref|ZP_02316374.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167467011|ref|ZP_02331715.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           FV-1]
 gi|170023626|ref|YP_001720131.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186896169|ref|YP_001873281.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930086|ref|YP_002347961.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CO92]
 gi|229838637|ref|ZP_04458796.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895703|ref|ZP_04510874.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides A]
 gi|229899203|ref|ZP_04514346.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901771|ref|ZP_04516893.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|294504789|ref|YP_003568851.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Z176003]
 gi|51590361|emb|CAH22001.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775155|gb|ABG17674.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|108780139|gb|ABG14197.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Antiqua]
 gi|115348697|emb|CAL21643.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CO92]
 gi|149291511|gb|EDM41585.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CA88-4125]
 gi|162351488|gb|ABX85436.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Angola]
 gi|165916073|gb|EDR34680.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921186|gb|EDR38410.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989889|gb|EDR42190.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206505|gb|EDR50985.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166958416|gb|EDR55437.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167056503|gb|EDR66272.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169750160|gb|ACA67678.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
 gi|186699195|gb|ACC89824.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681700|gb|EEO77794.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|229687605|gb|EEO79678.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695003|gb|EEO85050.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701509|gb|EEO89537.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides A]
 gi|262362851|gb|ACY59572.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           D106004]
 gi|262366775|gb|ACY63332.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           D182038]
 gi|294355248|gb|ADE65589.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Z176003]
 gi|320014400|gb|ADV97971.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 209

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHW 180
           G D R   LT   AR  +  M+       +L+D   EI L     AA   N+F    + +
Sbjct: 76  GSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQY 135

Query: 181 GKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 136 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195

Query: 233 RSGA 236
           R  A
Sbjct: 196 RVAA 199


>gi|326778212|ref|ZP_08237477.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326658545|gb|EGE43391.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 225

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  R
Sbjct: 163 LTEQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVAR 219


>gi|222081960|ref|YP_002541325.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726639|gb|ACM29728.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 244

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 26/35 (74%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           L+ RE++ L W++ GKT+ EIA IL IS+ +V+ Y
Sbjct: 202 LSPREIDVLHWMARGKTAWEIAEILSISQKSVDFY 236


>gi|196033655|ref|ZP_03101067.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196044984|ref|ZP_03112217.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|218902956|ref|YP_002450790.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225863697|ref|YP_002749075.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|228931489|ref|ZP_04094404.1| Response regulator [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229090808|ref|ZP_04222037.1| Response regulator [Bacillus cereus Rock3-42]
 gi|229121388|ref|ZP_04250618.1| Response regulator [Bacillus cereus 95/8201]
 gi|229184030|ref|ZP_04311244.1| Response regulator [Bacillus cereus BGSC 6E1]
 gi|300117584|ref|ZP_07055367.1| response regulator [Bacillus cereus SJ1]
 gi|195994089|gb|EDX58045.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196023986|gb|EDX62660.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|218536231|gb|ACK88629.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225789961|gb|ACO30178.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|228599469|gb|EEK57075.1| Response regulator [Bacillus cereus BGSC 6E1]
 gi|228662077|gb|EEL17687.1| Response regulator [Bacillus cereus 95/8201]
 gi|228692511|gb|EEL46241.1| Response regulator [Bacillus cereus Rock3-42]
 gi|228828170|gb|EEM73890.1| Response regulator [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|298725019|gb|EFI65678.1| response regulator [Bacillus cereus SJ1]
          Length = 212

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+  S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMGSKEDECKIDTSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|149914980|ref|ZP_01903509.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp.
           AzwK-3b]
 gi|149811168|gb|EDM71005.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp.
           AzwK-3b]
          Length = 219

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ + 
Sbjct: 150 QLTNREQTILLQLAQGKSNKDVAHTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHG 209

Query: 245 IV 246
           ++
Sbjct: 210 VL 211


>gi|134101945|ref|YP_001107606.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|134101947|ref|YP_001107608.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914568|emb|CAM04681.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914570|emb|CAM04683.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 150

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +++G  + EIA  L  S  TV N +  +  +   + R  A+AYA+R  +
Sbjct: 90  LTTREIDVLRLMADGLDTAEIAQKLCYSERTVKNVVYGVTSRLNLRNRPHAVAYAMRAGV 149

Query: 246 V 246
           +
Sbjct: 150 I 150


>gi|118590980|ref|ZP_01548380.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118436502|gb|EAV43143.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 217

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I  G+++ EIA  LGIS  TV+ +  S+M+K    +    +A A++  +
Sbjct: 151 LTDRERQTLNLILAGRSNKEIAEGLGISIKTVDKHRTSLMQKLNVHSVPQLMAKALKEGM 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|116071221|ref|ZP_01468490.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116066626|gb|EAU72383.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 239

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 27/114 (23%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG-----------------------REVE 192
           R+RL + G+L+  QA    S  +H   D  +TG                       RE +
Sbjct: 115 RERLGDGGVLSVLQA--MDSDGIHM--DPTITGVCQQSRRRPSHGIAPPLSDVLTLREED 170

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +  G ++ EIA  L ++ +T+ + + S++RK   + R+ A+  A ++N+V
Sbjct: 171 VLRGLCRGLSNQEIADQLHLAVDTIKHAVTSLLRKLEARDRTQAVLVAFQHNLV 224


>gi|320160659|ref|YP_004173883.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994512|dbj|BAJ63283.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 215

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 35/54 (64%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L ++++G ++ EIA +L +S  TV+ +++ I+ K    +R+ A+ YA++  IV
Sbjct: 159 VLQFMAQGYSNAEIARLLVVSNATVHTHVSRILSKLNVSSRTQAVLYALKRGIV 212


>gi|312959247|ref|ZP_07773765.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311286507|gb|EFQ65070.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 210

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y   ++ K   ++    I  A RN +
Sbjct: 150 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|291009365|ref|ZP_06567338.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 214

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE++ L  +SEG     IA  L  S  TV N + +   +     R+ A++YA+R+ +
Sbjct: 154 ITNREIDVLRMVSEGFDLKHIAQELHFSERTVKNVLYNFTNRFNLHNRAHAVSYAIRSGL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|282860465|ref|ZP_06269531.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282564201|gb|EFB69737.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 251

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G    LT RE E L  ++    +  IA+ LG+S  TV ++I  +MRK A  +R+
Sbjct: 140 GSLSPLTQREREVLALVATQPDNTAIALALGVSPLTVKSHINRVMRKLAVSSRA 193


>gi|262204133|ref|YP_003275341.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087480|gb|ACY23448.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 216

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++G +S +IA  L IS  TV N++ + +RK     R     YA+ + +
Sbjct: 154 LTERETQVLREVAKGLSSRQIANRLAISPRTVENHVGATLRKLQLANRVELTRYAIEHGL 213


>gi|238756079|ref|ZP_04617401.1| Two component transcriptional regulator, LuxR family [Yersinia
           ruckeri ATCC 29473]
 gi|238705685|gb|EEP98080.1| Two component transcriptional regulator, LuxR family [Yersinia
           ruckeri ATCC 29473]
          Length = 209

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 148 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATILYLEN 206


>gi|221635975|ref|YP_002523851.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
 gi|221157551|gb|ACM06669.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
          Length = 213

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  L+  ++  L  I++G ++ EIA  L +S NTV  Y+  ++R+   + R  A+  A
Sbjct: 149 DIPLSPHQLSVLRLIAQGLSNREIADRLFLSENTVKGYVQEVLRRLGARNRLEAVMIA 206


>gi|218506954|ref|ZP_03504832.1| transcriptional activator protein [Rhizobium etli Brasil 5]
          Length = 179

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE++CL   + G  + +I   L IS + V  Y+AS  RK    T S A+A A
Sbjct: 119 LSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARA 173


>gi|206560622|ref|YP_002231387.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198036664|emb|CAR52562.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 395

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT  E E    + +G T DE A   GI++NT   ++  I  KT   TR   +   + N
Sbjct: 331 FRLTPMETEIALLLVDGLTLDEAAAATGITKNTARAHLRGIFAKTGA-TRQAVLVKTLLN 389

Query: 244 NIV 246
           ++V
Sbjct: 390 SVV 392


>gi|302036834|ref|YP_003797156.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|190343248|gb|ACE75636.1| response regulator [Candidatus Nitrospira defluvii]
 gi|300604898|emb|CBK41231.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + +  I+ GK+  +IA  L +  +T+N Y A I+ K   K  +    YA+ N 
Sbjct: 148 QLSDREYQVMCLIAVGKSLKDIADDLCVGVSTINTYRARILEKMQLKNNTELTHYAIENR 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|186682728|ref|YP_001865924.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465180|gb|ACC80981.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 221

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I+ G ++ EIA  L IS  TV N++ +I+     + R+ A  +A
Sbjct: 155 ELTPREKEVLRLIATGASNREIAQELYISEGTVKNHVTNILNTLNLRDRTQAAIWA 210


>gi|33594674|ref|NP_882318.1| putative regulatory protein [Bordetella pertussis Tohama I]
 gi|33598469|ref|NP_886112.1| putative regulatory protein [Bordetella parapertussis 12822]
 gi|33603411|ref|NP_890971.1| putative regulatory protein [Bordetella bronchiseptica RB50]
 gi|33564750|emb|CAE44075.1| putative regulatory protein [Bordetella pertussis Tohama I]
 gi|33574598|emb|CAE39247.1| putative regulatory protein [Bordetella parapertussis]
 gi|33577535|emb|CAE34800.1| putative regulatory protein [Bordetella bronchiseptica RB50]
 gi|332384085|gb|AEE68932.1| putative regulatory protein [Bordetella pertussis CS]
          Length = 115

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE +   +++ GK +  IA+ LGISR T   + A I RK
Sbjct: 40  LTARERQVAAYLAAGKANKVIAIDLGISRRTAEAHRARIFRK 81


>gi|226356513|ref|YP_002786253.1| DNA-binding response regulator [Deinococcus deserti VCD115]
 gi|226318503|gb|ACO46499.1| putative DNA-binding response regulator [Deinococcus deserti
           VCD115]
          Length = 216

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E   L  I+ G ++ +IA   G+S  TV  +++ ++ K   ++R+ A  YA+R+ I
Sbjct: 151 LTPKETIVLQLIARGCSNRDIAQDQGVSEATVKTHVSRLLSKLGLESRTQAALYALRHGI 210


>gi|167577917|ref|ZP_02370791.1| transcription regulator LuxR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167616043|ref|ZP_02384678.1| transcription regulator LuxR family protein [Burkholderia
           thailandensis Bt4]
          Length = 255

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   +D  ELT RE + L +++  KT+ +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 142 SYRIDSPRDALELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSK 201

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 202 NELIDLAA 209


>gi|158334970|ref|YP_001516142.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158305211|gb|ABW26828.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 169 QANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           QAN  +    V    D +LT  E + +  +++G ++ EIA  L +S+ TV +++++++ K
Sbjct: 137 QANSLEGELSVQVPFDVDLTPTETKVIQLVAKGMSNREIADDLSVSQRTVESHVSNMLGK 196

Query: 228 TATKTRSGAIAYAVRNNIV 246
           T    R+    +A+   +V
Sbjct: 197 TGLNNRTELARWAIEQRMV 215


>gi|77460736|ref|YP_350243.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77384739|gb|ABA76252.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 208

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y   ++ K   ++    I  A RN +
Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|329935679|ref|ZP_08285485.1| putative two-component system response regulator, LuxR family
           [Streptomyces griseoaurantiacus M045]
 gi|329304857|gb|EGG48729.1| putative two-component system response regulator, LuxR family
           [Streptomyces griseoaurantiacus M045]
          Length = 227

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   L  ++ G  + EIA  LGI+  TV +++ +++RK A + R
Sbjct: 158 LTARERSVLGLLASGLDNTEIAADLGITVGTVKSHVNAVLRKLALRDR 205


>gi|315181979|gb|ADT88892.1| two component transcriptional regulator, LuxR family [Vibrio
           furnissii NCTC 11218]
          Length = 207

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  +S+G T+ EIA  + +S  T++ Y   +M K  + +    I +A RN +
Sbjct: 147 LSDREMMVLQQLSQGLTNKEIADKMILSNKTISTYKTRLMEKLGSSSLLELIEFAKRNGV 206

Query: 246 V 246
           V
Sbjct: 207 V 207


>gi|260222417|emb|CBA31960.1| hypothetical protein Csp_D29730 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 230

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K A    +    YA+RN +
Sbjct: 170 LSERELQTLIKIASGKKLSDIAEELMLSPKTVSVYRARLLEKLALSNNAELTVYAIRNAL 229

Query: 246 V 246
           V
Sbjct: 230 V 230


>gi|256378301|ref|YP_003101961.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922604|gb|ACU38115.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++EG+++ EIA  L I  +TV +++   M K   + R   + +A +N +
Sbjct: 155 LTAREKEVVVLLAEGRSNVEIAEALFIEPSTVKSHLGRAMTKIGARDRLQTVVWAYQNGL 214


>gi|170740380|ref|YP_001769035.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168194654|gb|ACA16601.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 244

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           S  +  G+  ELT R+ + L  + EGK++ EIA  L +   TV  ++A+++R    +
Sbjct: 173 SESLRPGRTVELTPRQRDVLALLVEGKSNKEIARQLQLGEGTVKVHMAALLRSLGVQ 229


>gi|167755832|ref|ZP_02427959.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402]
 gi|167704771|gb|EDS19350.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402]
          Length = 67

 Score = 37.4 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E    + + +++ +IA  LGIS  TV N+I+++++K    +R  A+
Sbjct: 5   LTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAV 56


>gi|167006408|ref|YP_001661631.1| putative two-component system regulator [Streptomyces sp. HK1]
 gi|166162490|gb|ABY83611.1| putative two-component system regulator [Streptomyces sp. HK1]
          Length = 220

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E +  I+ G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + 
Sbjct: 154 DLTERETEVVALIAHGLSNAEIAQRLVLAEQTVKTHVGRILLKLGLRDRTQAAVFAYESG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|311747217|ref|ZP_07721002.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
 gi|126578929|gb|EAZ83093.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
          Length = 254

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ +E++ L  ISEG  S  IA  L +S +T+N +  ++++KT   T S  +  A
Sbjct: 194 LSSKEIKILKMISEGMLSKHIAEKLNLSFHTINTHRRNMLKKTKCNTSSEMVNLA 248


>gi|328880209|emb|CCA53448.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 200

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +T RE + L  ++ G T+ EIA  L IS +TV  ++AS+M K   + R
Sbjct: 136 VTAREEQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNR 183


>gi|329947896|ref|ZP_08294828.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523520|gb|EGF50618.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 203

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L   + G  + EIA  L +   TV NY++S + KT  + R+ A   A  N 
Sbjct: 143 LTDREKEVLQAAATGADAREIAARLHLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201


>gi|315182035|gb|ADT88948.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC
           11218]
          Length = 207

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NN
Sbjct: 142 KLTRREQQIIKLLGSGASNIEIADKLYVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 200

Query: 245 IV 246
           I 
Sbjct: 201 IA 202


>gi|254693110|ref|ZP_05154938.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|261213346|ref|ZP_05927627.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260914953|gb|EEX81814.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 213

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+
Sbjct: 149 LTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAV 200


>gi|239980726|ref|ZP_04703250.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 204

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 181 GKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G D  L+G   +E   L  I EG T+  I   L ++  T+ NY+++++ K   + RS A 
Sbjct: 133 GDDDRLSGLTEQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSALLAKLGMERRSQAA 192

Query: 238 AYAVR 242
           AY  R
Sbjct: 193 AYVAR 197


>gi|269929059|ref|YP_003321380.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788416|gb|ACZ40558.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 214

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ REVE L  +  G ++ EIA  L IS  TV N+++ +  K   + R  A+ +A+++ 
Sbjct: 143 LSTREVEILDCMVRGLSNREIAEALFISEQTVKNHMSRLFHKLHVRDRLQAVLFAIQHG 201


>gi|222080193|ref|YP_002540056.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221738838|gb|ACM39617.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 227

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ GKT +EIA + G+  N+V   +   M++   ++++   A A+R  +
Sbjct: 167 LDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 226

Query: 246 V 246
           +
Sbjct: 227 I 227


>gi|50120831|ref|YP_049998.1| transcriptional regulator NarP [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611357|emb|CAG74804.1| nitrate/nitrite response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 210

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  ++ G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 150 LTERELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNMLRKLNVRSRVAA 200


>gi|330470343|ref|YP_004408086.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328813314|gb|AEB47486.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 213

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E LT ++ G T+ E A  L IS  TV  ++  +  K     R+ A+A A
Sbjct: 148 LSQRELEVLTLVARGSTNREAAAQLFISEATVKTHLLHVYAKLGVNDRAAAVAVA 202


>gi|319648461|ref|ZP_08002677.1| YvfU protein [Bacillus sp. BT1B_CT2]
 gi|317389540|gb|EFV70351.1| YvfU protein [Bacillus sp. BT1B_CT2]
          Length = 197

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L     GKT+ EI+  L +S  TV NYI+ IM+K   K R  A   A
Sbjct: 137 LTEREQDILRLAYIGKTTKEISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIA 191


>gi|316934925|ref|YP_004109907.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315602639|gb|ADU45174.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           DX-1]
          Length = 246

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 37/60 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  ++E L +++ GK++ +IA    +S  TV + +A I++K     R+ A  +A+RN+
Sbjct: 178 ELTPSQLELLPYLASGKSNRQIAKERDMSVFTVKSQVAGIIQKLNVANRTQAALFAMRNS 237


>gi|282898145|ref|ZP_06306138.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Raphidiopsis brookii D9]
 gi|281196969|gb|EFA71872.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Raphidiopsis brookii D9]
          Length = 216

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE+E    +++G T+ EIA  L IS+NTV   +  + +K     R+  +A
Sbjct: 161 LTARELEIAQLVAQGLTNGEIASQLWISQNTVKQSLKRMFKKLGVSARAEMVA 213


>gi|240949973|ref|ZP_04754289.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           NM305]
 gi|240295573|gb|EER46299.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           NM305]
          Length = 209

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    +R  A
Sbjct: 149 LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|291298070|ref|YP_003509348.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567290|gb|ADD40255.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L+    G +++EIA  LGI   TV +++ S+M K   + R  A+  A    +
Sbjct: 157 LTARERDVLSLTGRGLSNNEIATELGIGYETVKSHLRSVMTKLRLRDRVHAVIVAYETGL 216

Query: 246 V 246
           +
Sbjct: 217 L 217


>gi|237734801|ref|ZP_04565282.1| transcriptional regulator [Mollicutes bacterium D7]
 gi|229382129|gb|EEO32220.1| transcriptional regulator [Coprobacillus sp. D7]
          Length = 71

 Score = 37.4 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E    + + +++ +IA  LGIS  TV N+I+++++K    +R  A+
Sbjct: 9   LTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAV 60


>gi|228990797|ref|ZP_04150762.1| Response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228996897|ref|ZP_04156530.1| Response regulator [Bacillus mycoides Rock3-17]
 gi|229004572|ref|ZP_04162310.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228756613|gb|EEM05920.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228762776|gb|EEM11690.1| Response regulator [Bacillus mycoides Rock3-17]
 gi|228769323|gb|EEM17921.1| Response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 212

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+ ++ +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLLENKEEESKIDKTLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI SI+ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSILGKTGLEHRTQIAIY 205


>gi|218660024|ref|ZP_03515954.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 118

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+ RE++CL   + G  + +I+  L IS + V  Y+AS  RK    T S A+A A
Sbjct: 57  HLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKA 112


>gi|187929064|ref|YP_001899551.1| LuxR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725954|gb|ACD27119.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12J]
          Length = 181

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+    H      LT RE +    + EGKTS +I   L IS  TV  Y A +M+K A  T
Sbjct: 111 FEDLSAHRPVTAALTPRERDIAAQLVEGKTSKQIGKQLEISPRTVEIYRARLMKKYAANT 170


>gi|52082580|ref|YP_081371.1| CheY-like [Bacillus licheniformis ATCC 14580]
 gi|52787980|ref|YP_093809.1| YvfU [Bacillus licheniformis ATCC 14580]
 gi|52005791|gb|AAU25733.1| CheY-like [Bacillus licheniformis ATCC 14580]
 gi|52350482|gb|AAU43116.1| YvfU [Bacillus licheniformis ATCC 14580]
          Length = 200

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L     GKT+ EI+  L +S  TV NYI+ IM+K   K R  A   A
Sbjct: 140 LTEREQDILRLAYIGKTTKEISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIA 194


>gi|328948798|ref|YP_004366135.1| LuxR family transcriptional regulator [Treponema succinifaciens DSM
           2489]
 gi|328449122|gb|AEB14838.1| two component transcriptional regulator, LuxR family [Treponema
           succinifaciens DSM 2489]
          Length = 202

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT +E E L  ISE   ++ IA  LGIS+ TV NY++ I  K   K R
Sbjct: 148 LTKKERELLDLISEHLPNEIIASRLGISKRTVENYVSRIFDKFNVKNR 195


>gi|326331183|ref|ZP_08197479.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325951078|gb|EGD43122.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E   L  I EG T+ EIA  + ++  TV NY++SI+ K   + R+ A   A
Sbjct: 156 LTPQEKRLLALIGEGLTNREIAGRMFLAEKTVKNYVSSILAKLGVQRRTQAALMA 210


>gi|303246240|ref|ZP_07332520.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302492303|gb|EFL52175.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 218

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           QA    +YD        LT RE E +  + EG T+ E+A  L IS  T  ++  ++MRK 
Sbjct: 147 QAAPANAYD-------NLTAREREVMRMVVEGLTTKEVAEALAISVKTAEHHRCNLMRKL 199

Query: 229 ATKTRSGAIAYAVRNNIV 246
             +     + YA R  ++
Sbjct: 200 GLQNSVELVRYASRLGLI 217


>gi|264680026|ref|YP_003279935.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262210541|gb|ACY34639.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 161

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    ++ G+T+ +IA  L +S  TV+ Y   +M K    + S    YA++N 
Sbjct: 99  QLSEREFQVFLKLARGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNR 158

Query: 245 IV 246
           ++
Sbjct: 159 LI 160


>gi|260769964|ref|ZP_05878897.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972]
 gi|260615302|gb|EEX40488.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972]
          Length = 223

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NN
Sbjct: 158 KLTRREQQIIKLLGSGASNIEIADKLYVSENTVKTHLHNVFKKINAKNRLQALIWA-KNN 216

Query: 245 IV 246
           I 
Sbjct: 217 IA 218


>gi|297560931|ref|YP_003679905.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845379|gb|ADH67399.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 217

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  + EG +++EIA  L +S  T   +++  M K   + R+  + +A R  +
Sbjct: 156 LTEREREVVGLVGEGLSNEEIAARLVVSPATARTHVSRAMVKLGARDRAQLVVFAFRAGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|218886702|ref|YP_002436023.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757656|gb|ACL08555.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 236

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  +++G T  EIA ++ +S  TV+ Y    MRK     ++  + +A+R+ +
Sbjct: 175 LSAREYEVIARLAQGATVAEIARVMNLSGKTVSTYKTRAMRKLNITNQAELLRFAMRHGL 234


>gi|91204580|emb|CAJ70808.1| similar to two component response regulator [Candidatus Kuenenia
           stuttgartiensis]
          Length = 210

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + + L  RE E +  + +  ++ EIA+ L +S NT+  Y+  +MRK    +R+G I+
Sbjct: 141 RKWHLNRREQEIVQLLLDDHSNKEIALNLNLSYNTIKGYLRLLMRKLDVNSRAGIIS 197


>gi|152978046|ref|YP_001343675.1| two component LuxR family transcriptional regulator [Actinobacillus
           succinogenes 130Z]
 gi|150839769|gb|ABR73740.1| two component transcriptional regulator, LuxR family
           [Actinobacillus succinogenes 130Z]
          Length = 209

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 179 HWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           H  KD  + LT RE++ L  I+ G ++ +IA  L IS  TV  +I +++RK    +R  A
Sbjct: 140 HASKDPIYSLTDREMDVLQQIATGLSNKQIAGKLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|53722189|ref|YP_111174.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|76819050|ref|YP_335286.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1710b]
 gi|126443269|ref|YP_001062630.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 668]
 gi|126458472|ref|YP_001075585.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134283397|ref|ZP_01770097.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|167723630|ref|ZP_02406866.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
 gi|167742598|ref|ZP_02415372.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167819761|ref|ZP_02451441.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
 gi|167828147|ref|ZP_02459618.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
 gi|167849611|ref|ZP_02475119.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|167898207|ref|ZP_02485609.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
 gi|167906569|ref|ZP_02493774.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914925|ref|ZP_02502016.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
 gi|167922765|ref|ZP_02509856.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217418450|ref|ZP_03449957.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226200233|ref|ZP_03795778.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237509813|ref|ZP_04522528.1| response regulator receiver domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|242313775|ref|ZP_04812792.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254190252|ref|ZP_04896761.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254193436|ref|ZP_04899870.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254264632|ref|ZP_04955497.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|254300511|ref|ZP_04967957.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|52212603|emb|CAH38629.1| putative response regulator protein [Burkholderia pseudomallei
           K96243]
 gi|76583523|gb|ABA52997.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710b]
 gi|126222760|gb|ABN86265.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 668]
 gi|126232240|gb|ABN95653.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|134245146|gb|EBA45240.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|157810287|gb|EDO87457.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157937929|gb|EDO93599.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169650189|gb|EDS82882.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|217397754|gb|EEC37769.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225927741|gb|EEH23783.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|235002018|gb|EEP51442.1| response regulator receiver domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|242137014|gb|EES23417.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254215634|gb|EET05019.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 215

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    I+ G+T  EIA  L +S  TV+ Y A I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVFRRIAAGETITEIAQALDVSAKTVSTYKARILEKMQMPHDAALVRYAIRHKL 208


>gi|229818787|ref|YP_002880313.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564700|gb|ACQ78551.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 203

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  LT RE + L   + G T  ++A    +S  TV NY++S + KT  +TR+ A
Sbjct: 140 DSPLTERERDVLLAAASGGTVADVARATHLSEGTVRNYLSSAIGKTGARTRAEA 193


>gi|223041846|ref|ZP_03612034.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           202]
 gi|223017339|gb|EEF15762.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           202]
          Length = 209

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    +R  A
Sbjct: 149 LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|2873371|gb|AAC38168.1| CarR [Serratia marcescens]
          Length = 244

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  +S G T  E++  LGIS  TV  +I + +RK        AI+ A+  N+
Sbjct: 169 ITPRETEVLFLVSRGNTYKEVSRTLGISEATVKFHINNSVRKLNVINSRHAISKALELNL 228


>gi|121605553|ref|YP_982882.1| putative PAS/PAC sensor protein [Polaromonas naphthalenivorans CJ2]
 gi|120594522|gb|ABM37961.1| transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 184

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 24/48 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ELT RE E    +  G TS EI   L IS  TV  Y A +MRK    T
Sbjct: 125 ELTAREREVAAHLMRGLTSKEIGRALAISHRTVEIYRARLMRKFKAST 172


>gi|119714214|ref|YP_919356.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119526123|gb|ABL79493.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 567

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  + EG ++ EIA  L IS  T  +++ +I+ K   ++R+ A AYA+ + +
Sbjct: 497 LSRREQEVLGLVVEGLSNAEIAERLFISVKTAGHHVGNILTKLGVRSRTEATAYALLHPV 556

Query: 246 V 246
            
Sbjct: 557 A 557


>gi|302552999|ref|ZP_07305341.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
 gi|302470617|gb|EFL33710.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
          Length = 221

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +  S    +G   +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   +
Sbjct: 147 LMPSAQAAYG---DLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLR 203

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A    +V
Sbjct: 204 DRTQAAVFAYEARLV 218


>gi|254491454|ref|ZP_05104633.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224462932|gb|EEF79202.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE E    ++EGK  D+IA  L I + TV NY  S+ +K
Sbjct: 151 LTSREFEVFRLLAEGKLVDDIASRLNIGQKTVANYQTSLKQK 192


>gi|92115421|ref|YP_575349.1| LuxR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91798511|gb|ABE60650.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 238

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+E +  +  G ++ EIA  L +S +TV +++ +I RK     R  A+ +A +N
Sbjct: 163 LTHRELEIIGLLGTGASNTEIADQLFVSEHTVKSHLYNIFRKIKVHNRIQAMNWARQN 220


>gi|85705256|ref|ZP_01036355.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
 gi|85670129|gb|EAQ24991.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
          Length = 215

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ + 
Sbjct: 147 QLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIASTAGLTRYALEHG 206

Query: 245 IV 246
           ++
Sbjct: 207 VL 208


>gi|325263089|ref|ZP_08129824.1| transcriptional regulatory protein DegU [Clostridium sp. D5]
 gi|324031482|gb|EGB92762.1| transcriptional regulatory protein DegU [Clostridium sp. D5]
          Length = 243

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K + LT REV  + ++ + KT+ EIA  L +S  TV  ++++++RK   K R
Sbjct: 175 KKYGLTEREVSIIDFLMKRKTNIEIAGSLCLSEKTVKTHVSNVIRKMNVKNR 226


>gi|319795110|ref|YP_004156750.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597573|gb|ADU38639.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS]
          Length = 155

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE++ L  +S+G ++  IA  L  S NT++  I SI RK    +R+ A+  A+ 
Sbjct: 84  NVSLSPRELQVLQLVSQGLSNRRIAEALSRSANTIDTQIKSIYRKLDVNSRTRAVRAAME 143

Query: 243 NNIV 246
             ++
Sbjct: 144 QGLL 147


>gi|307149920|ref|YP_003890963.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306986720|gb|ADN18598.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822]
          Length = 204

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ +E + L ++S G +  EIA  L IS NT+ NY+  +  K   K ++  +  A+R  +
Sbjct: 143 ISSQEQKMLHYLSYGYSYTEIAEALDISLNTLKNYMTDLREKLNAKDKTHLVVIALRTGL 202

Query: 246 V 246
           V
Sbjct: 203 V 203


>gi|291298065|ref|YP_003509343.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567285|gb|ADD40250.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 204

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 28/55 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L+    G T  EIA  L +S  TV NY+A+   K   + R  AI  A
Sbjct: 144 LTAREREVLSITHGGATPKEIASKLQLSVGTVRNYLANACAKLGARNRIEAIRVA 198


>gi|282901307|ref|ZP_06309233.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193802|gb|EFA68773.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 210

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT  E++ + +++ G  + EIA  L +S+ TV +++++++ KT    R+    +A+ 
Sbjct: 147 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 206

Query: 243 NNI 245
           N +
Sbjct: 207 NQM 209


>gi|196231881|ref|ZP_03130737.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224003|gb|EDY18517.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 195

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  I+EG ++ E+A  + I+  TV ++ A +M+K      +    YAVR  +
Sbjct: 131 LTDRERAILQMIAEGMSNKEMAERISIAPKTVEHHRAQVMQKLGMHDVATLTRYAVRMGL 190

Query: 246 V 246
           V
Sbjct: 191 V 191


>gi|126727388|ref|ZP_01743223.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126703383|gb|EBA02481.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 204

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAY 239
           +LT RE E L  +++GK++ EIA  L I   TV  ++ ++ RK   A +T++  +AY
Sbjct: 143 KLTKRECEVLKGLTKGKSNKEIARDLNIQEPTVKLHMKTLYRKIGAANRTQAALMAY 199


>gi|116621801|ref|YP_823957.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224963|gb|ABJ83672.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 225

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I  G ++ EIA  L I+R TV  ++  I+R+     R+ A+  AV+  I
Sbjct: 163 LSPREMDILRLIVRGLSNQEIADALNITRGTVKWHVNIILRRLDVNDRTQAVVVAVQRGI 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|58425447|gb|AAW74484.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 1005

 Score = 37.0 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R  A+A A
Sbjct: 932 RELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSRESALAQA 983


>gi|88861227|ref|ZP_01135860.1| putative transcriptional regulator, LuxR family protein
           [Pseudoalteromonas tunicata D2]
 gi|88816820|gb|EAR26642.1| putative transcriptional regulator, LuxR family protein
           [Pseudoalteromonas tunicata D2]
          Length = 218

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)

Query: 150 KG-RIILRDRLWEIGLLAAYQANMF---KSYDVHWGKD------------FELTGREVEC 193
           KG R++L ++LW       Y+ N+     S  +H+ KD              LT RE   
Sbjct: 110 KGIRLLLDNQLW-------YRRNIMCNALSRLLHFNKDNILQLTDTLAEPISLTKREKAI 162

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +  +S+G  + EIA  L IS +TV  ++ S  RKT  + R   +++A +N
Sbjct: 163 IVLMSKGCKNKEIADELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212


>gi|238799349|ref|ZP_04642788.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
 gi|238716799|gb|EEQ08676.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
          Length = 209

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A
Sbjct: 148 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199


>gi|329939332|ref|ZP_08288668.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329301561|gb|EGG45455.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 230

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   ELT RE E L  I++G ++ EIA  L ++ +T+  +++ ++ K   + R+ A  +A
Sbjct: 162 GAYGELTERETEVLILIAQGLSNAEIAGRLVVAESTIKTHVSRVLVKLGLRDRTQAAVFA 221

Query: 241 VRNNIV 246
               +V
Sbjct: 222 YEARLV 227


>gi|322513935|ref|ZP_08067011.1| nitrate/nitrite response regulator protein NarL [Actinobacillus
           ureae ATCC 25976]
 gi|322120230|gb|EFX92185.1| nitrate/nitrite response regulator protein NarL [Actinobacillus
           ureae ATCC 25976]
          Length = 209

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    +R  A
Sbjct: 149 LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|319794782|ref|YP_004156422.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597245|gb|ADU38311.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 235

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 162 IGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           +G +AA Q ++    + D        LT RE + L  +S+G ++ ++A  L ISR TV  
Sbjct: 148 LGWIAAQQTSLSAVLASDAPSPLPVALTPRERKILELVSQGLSNRDMAESLSISRLTVEC 207

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  +I RK A  +R+ A+    R+ ++
Sbjct: 208 HTKNIYRKLAVTSRTEAVFQGRRHGLL 234


>gi|317124082|ref|YP_004098194.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588170|gb|ADU47467.1| regulatory protein LuxR [Intrasporangium calvum DSM 43043]
          Length = 336

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E++ R+ E L  ++ G     IA  LGI+  TV   I  +MR+  T+TR GA   AV+  
Sbjct: 273 EISDRDREILGLMAAGLKDRAIARSLGITERTVGRRINELMRRLDTETRFGAGVRAVQRG 332


>gi|302206769|gb|ADL11111.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis C231]
 gi|308277014|gb|ADO26913.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis I19]
          Length = 208

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            D  LT RE+E    I+ G+T+ EIA  L IS +TV  ++A I  +   + R
Sbjct: 142 SDLPLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNR 193


>gi|282858615|ref|ZP_06267777.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
 gi|282588619|gb|EFB93762.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F+LT  E E L  I+ G T+ EIA     S +TVN +  +I RK +    + A  YA+R+
Sbjct: 145 FKLTKTETEILIDIALGMTTKEIAEKRFSSFHTVNTHRKNIFRKLSVNNANEATRYALRS 204

Query: 244 NIV 246
            ++
Sbjct: 205 GLI 207


>gi|311742864|ref|ZP_07716672.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311313544|gb|EFQ83453.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 216

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+  ELT RE + L  ++ G ++ EIA  L +S  TV ++++ I+ K   + R  A+  A
Sbjct: 150 GRLDELTERERDVLVLLARGHSNAEIAGELYVSAATVKSHVSHILAKLEVRDRVQAVILA 209

Query: 241 VRNNIV 246
             N ++
Sbjct: 210 FENGLM 215


>gi|290962363|ref|YP_003493545.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22]
 gi|260651889|emb|CBG75019.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22]
          Length = 234

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G  + E+A  LG+S  TV  ++A I+ K   + R  A+  A R  +
Sbjct: 157 LTPRERDVLRLLAGGLNNAELADHLGLSEATVKTHVARILAKLGLRDRVQAVIVAYRTGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|254229254|ref|ZP_04922672.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262393135|ref|YP_003284989.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25]
 gi|151938178|gb|EDN57018.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262336729|gb|ACY50524.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 153 DLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|82701299|ref|YP_410865.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82409364|gb|ABB73473.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 79

 Score = 37.0 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + W+ +GKT+ EI  IL IS  TV N++  I +K     R+ A
Sbjct: 1   MDWVGKGKTNAEIGSILSISEFTVRNHLYHIFQKLGVYNRTQA 43


>gi|329945858|ref|ZP_08293545.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328528306|gb|EGF55284.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 223

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E +  ++EG  + E+A  L +S  TV N+I++I+ K   + R+
Sbjct: 162 LTDREYEVVEAVAEGLDNGEVAARLFMSEGTVRNHISAILAKLGLRNRT 210


>gi|296159395|ref|ZP_06842220.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295890379|gb|EFG70172.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 493

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE E L  IS G ++ E+A  L +S +TV  ++ S+ RK    TR+ A
Sbjct: 433 LSPREAEVLKHISLGASNKEVARALELSPSTVRTHVESVFRKLECSTRAAA 483


>gi|290960962|ref|YP_003492144.1| response regulator [Streptomyces scabiei 87.22]
 gi|260650488|emb|CBG73604.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 225

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E ++  +EG ++DEIA  L +S  TV  ++   M K   + R+  +  A ++ +
Sbjct: 159 LTSREREVMSLAAEGSSNDEIAEKLYVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQSGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|28899484|ref|NP_799089.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308094736|ref|ZP_05891637.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308095423|ref|ZP_05905792.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308125607|ref|ZP_05776200.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|28807720|dbj|BAC60973.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308087209|gb|EFO36904.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093073|gb|EFO42768.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308111203|gb|EFO48743.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 153 DLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|87123578|ref|ZP_01079429.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86169298|gb|EAQ70554.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 250

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ +
Sbjct: 189 FTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRFALQHRL 248

Query: 246 V 246
           V
Sbjct: 249 V 249


>gi|332881678|ref|ZP_08449326.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332680317|gb|EGJ53266.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 326

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 180 WGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +G+D     L+ RE E +  + +G ++ EIA  L IS NTV  +  +I RK    + +G 
Sbjct: 250 YGEDSANDALSDREKEVIVCVVKGMSNKEIAEQLYISVNTVMTHRRNISRKLQIHSPAGL 309

Query: 237 IAYAVRNNIV 246
             YA+ N ++
Sbjct: 310 TIYAIVNGLI 319


>gi|325067026|ref|ZP_08125699.1| LuxR family two component transcriptional regulator [Actinomyces
           oris K20]
          Length = 203

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L   + G  + EIA  L +   TV NY++S + KT  + R+ A   A  N 
Sbjct: 143 LTEREKEVLLAAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201


>gi|308179160|ref|YP_003918566.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307746623|emb|CBT77595.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 234

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++EG ++ EIA    +S  TV  ++  I+ K   + R  A+ YA    
Sbjct: 165 DLTPREQEVLRALAEGLSNAEIAHRFFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 224

Query: 245 IV 246
           +V
Sbjct: 225 LV 226


>gi|239834753|ref|ZP_04683081.1| Glycerone kinase [Ochrobactrum intermedium LMG 3301]
 gi|239822816|gb|EEQ94385.1| Glycerone kinase [Ochrobactrum intermedium LMG 3301]
          Length = 693

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIAEIMGISRATVNSYLADARSRGIVNISIEPARLGSLAIA 86


>gi|297565492|ref|YP_003684464.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296849941|gb|ADH62956.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 211

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE+E L+ +++G ++ EIA  L IS  TV  ++     K     R+ A+  A+ 
Sbjct: 144 DESLSTRELEVLSLVAKGLSNKEIARELKISEATVKTHLLHTFGKLGVDDRTAAVTVALE 203

Query: 243 NNIV 246
             I+
Sbjct: 204 RGIL 207


>gi|254252667|ref|ZP_04945985.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124895276|gb|EAY69156.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 182 KDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           + FEL T RE E L+++  G  + +IA  LG+S  TV  + AS+MRK
Sbjct: 149 QSFELLTRREREVLSYVISGALNKQIASHLGLSLITVKQHRASVMRK 195


>gi|317492747|ref|ZP_07951172.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919270|gb|EFV40604.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 210

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 12/131 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA----NMFK------ 174
           G+D R   LT   +R  +  ++       +L+D   EI L   +QA    N+F       
Sbjct: 77  GVDARIIILTVSDSRSDVYALVDAGADGYLLKDSEPEILLSQIHQAASGKNVFSDTISEY 136

Query: 175 -SYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            S        F +LT RE++ L  ++ G ++ +IA  L IS  TV  +I +++RK   ++
Sbjct: 137 LSSRTELTDPFADLTERELDVLQEVARGLSNKQIASQLHISEETVKVHIRNLLRKLDVRS 196

Query: 233 RSGAIAYAVRN 243
           R  A    + N
Sbjct: 197 RVAATVLYLEN 207


>gi|222080291|ref|YP_002540155.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221738936|gb|ACM39715.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 230

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ GKT +EIA + G+  N+V   +   M++   ++++   A A+R  +
Sbjct: 170 LDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRRL 229

Query: 246 V 246
           +
Sbjct: 230 I 230


>gi|114765164|ref|ZP_01444308.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542439|gb|EAU45466.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 204

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE+E L  ++EGK++ EIA  L I+  T+  ++ ++ RK     R+ A
Sbjct: 144 LTKREMEVLKGLTEGKSNKEIARDLEITEPTIKLHVKTLYRKLDVNNRTQA 194


>gi|331697120|ref|YP_004333359.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951809|gb|AEA25506.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 931

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E  T ++EG+T+ EIA  L +S  TV +++A+++ K     R+
Sbjct: 870 LTPREREITTLLAEGRTNREIAGRLVLSERTVESHVANVLGKLGLARRA 918


>gi|253575444|ref|ZP_04852781.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845091|gb|EES73102.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 201

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +D  LT RE E L     G+++ EIA  L ++  TV NY++  ++K   +TR  A   A
Sbjct: 137 EDNPLTERETEVLRLSHAGRSTREIAETLFLTEGTVRNYLSLAIQKLGVETRQQATERA 195


>gi|296130719|ref|YP_003637969.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
 gi|296022534|gb|ADG75770.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
          Length = 252

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 181 GKDFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G+   LTG   RE + L  + +G  + EIA  L  S  TV   +  + R+   + R+ A+
Sbjct: 184 GQVLALTGVDERERQVLRLLGDGADTREIARRLSYSERTVKVVVQDLTRRFGLRNRTHAV 243

Query: 238 AYAVRNNIV 246
           A+AVR+ ++
Sbjct: 244 AFAVRHGLI 252


>gi|108800345|ref|YP_640542.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119869473|ref|YP_939425.1| response regulator receiver protein [Mycobacterium sp. KMS]
 gi|126435968|ref|YP_001071659.1| response regulator receiver protein [Mycobacterium sp. JLS]
 gi|108770764|gb|ABG09486.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS]
 gi|119695562|gb|ABL92635.1| response regulator receiver protein [Mycobacterium sp. KMS]
 gi|126235768|gb|ABN99168.1| response regulator receiver protein [Mycobacterium sp. JLS]
          Length = 542

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 186 LTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE++ L  I+ +G ++ ++A  + IS  TV  ++A+I  K    +R+ A+A+A ++N
Sbjct: 481 LTKREIDILRRIAADGASNRQLAQQMFISEKTVGRHLANIYLKLQVSSRAAAVAWAHQHN 540

Query: 245 IV 246
           I 
Sbjct: 541 IA 542


>gi|311898017|dbj|BAJ30425.1| putative LuxR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 104

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT RE E    + +G ++ EIA  L +S +TV  ++A I+ KT  +TR+ A   A R
Sbjct: 32  ELTAREREVFDLLGKGLSNAEIADRLVVSGSTVKAHLARILIKTGAETRTRAALMAQR 89


>gi|293115534|ref|ZP_06604529.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM
           2876]
 gi|292809348|gb|EFF68553.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM
           2876]
          Length = 211

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +T +E E +  +++G ++ EIA  L +   TV NY +SI+ K   + R+  + Y  +N
Sbjct: 154 ITEKEFEIIKLVADGLSNKEIASRLYLGEGTVRNYFSSILDKLELRDRTQLVVYYYKN 211


>gi|320007676|gb|ADW02526.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 281

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  REV+ +  ++ G T+   A  LG+   TV +Y+ S MRK    TR  A+  A R  +
Sbjct: 220 LAPREVDVVACVASGATNAVAAERLGLRPETVKSYLRSAMRKLGAHTRLEAVVAARRAGL 279

Query: 246 V 246
           +
Sbjct: 280 L 280


>gi|223936934|ref|ZP_03628843.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894503|gb|EEF60955.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 226

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +L+GRE E L  ++EG ++ EI   L IS  TV  ++  I  K   + R+ A A  +R+
Sbjct: 164 QLSGREQEILALLAEGLSNKEIGSKLNISFTTVRTHLMHIYEKLHVRCRTEAAAKYLRS 222


>gi|116073982|ref|ZP_01471244.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069287|gb|EAU75039.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 249

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++
Sbjct: 186 LSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRFALQH 245

Query: 244 NIV 246
           ++V
Sbjct: 246 HLV 248


>gi|27383173|ref|NP_774702.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27356347|dbj|BAC53327.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 206

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 34/73 (46%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +A  F    +      +++ RE+E L  +  G    E+A  LGIS  TV N  +++  K 
Sbjct: 129 EATTFAGAAIKASPLTQMSARELEILRLLGRGDRISEVAAELGISYKTVANITSALKTKL 188

Query: 229 ATKTRSGAIAYAV 241
             K+ S  +  AV
Sbjct: 189 GAKSHSDLVRIAV 201


>gi|269127816|ref|YP_003301186.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268312774|gb|ACY99148.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 201

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE+E L    EG +  +IA  L ++  TV N+++ I RK   + R  AI  A
Sbjct: 138 DSPLTPRELEVLRLAGEGASVAQIADTLVLTIGTVRNHLSRINRKIGARNRVHAIRIA 195


>gi|239995472|ref|ZP_04715996.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonas macleodii ATCC 27126]
          Length = 211

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 34/53 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ELT ++++ L+++  G  + +IA  + ++  T+  +I++I+RK    TR+ A+
Sbjct: 150 ELTPKQIQVLSYLRAGLMNKQIAHEMNVTEATIKAHISAILRKLEINTRTQAV 202


>gi|269126536|ref|YP_003299906.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311494|gb|ACY97868.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++ G ++ EIA  L +S  TV  ++ +++ K   + R  A+ YA
Sbjct: 160 LTEREREVLKHVARGLSNAEIARELVVSETTVKTHVGNVLAKLGLRDRVQAVVYA 214


>gi|196041201|ref|ZP_03108496.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
 gi|196027909|gb|EDX66521.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
          Length = 212

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+  S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMGSKEDECKIDKSLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|15839575|ref|NP_334612.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           CDC1551]
 gi|13879689|gb|AAK44426.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis
           CDC1551]
          Length = 256

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  REV  L  +++G ++ ++AV L     T+ N +  I+ +   + R+ A+A+A+R  +
Sbjct: 196 LAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGL 255

Query: 246 V 246
           +
Sbjct: 256 I 256


>gi|332298307|ref|YP_004440229.1| two component transcriptional regulator, LuxR family [Treponema
           brennaborense DSM 12168]
 gi|332181410|gb|AEE17098.1| two component transcriptional regulator, LuxR family [Treponema
           brennaborense DSM 12168]
          Length = 230

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           F+L+ +E   +  + +GK++ EIA    I   TV NYI++I  K  T  R   +A A
Sbjct: 165 FDLSPKERTIIKHMLQGKSNKEIAADANIGEQTVRNYISAIYAKLGTSDRRTLLAKA 221


>gi|312131668|ref|YP_003999008.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311908214|gb|ADQ18655.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +DF LT +E + L ++  GK+   IA +L IS  TV  ++ +I  K    + + A+A A+
Sbjct: 148 EDFNLTEQERKVLHYLVAGKSYKMIADVLFISLETVKTHLRNIYLKLQVHSGTEAVAKAL 207

Query: 242 RNNI 245
           ++ I
Sbjct: 208 KHKI 211


>gi|300859067|ref|YP_003784050.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686521|gb|ADK29443.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302331322|gb|ADL21516.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis 1002]
          Length = 208

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            D  LT RE+E    I+ G+T+ EIA  L IS +TV  ++A I  +   + R
Sbjct: 142 SDLPLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNR 193


>gi|297161212|gb|ADI10924.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LTGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+
Sbjct: 162 LTGREREVLVQVAGGLSNDEIAARLEVSPLTVKTHVNRAMAKLGARDRA 210


>gi|258652603|ref|YP_003201759.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258555828|gb|ACV78770.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 363

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+GRE++ L   ++G+ +DEIA  L +S  TV  ++ +I  K   + +S   A   R
Sbjct: 303 LSGRELQVLGLAAQGRDNDEIARRLTLSVRTVERHLQNIYAKLEVQGKSARTAAVAR 359


>gi|223937111|ref|ZP_03629018.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894133|gb|EEF60587.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G +A      F++     GK   L  RE + LT ++ G    EI   LG+S  TV  Y+ 
Sbjct: 128 GHIARKVVGYFRTLGPATGKAKPLAPREEQVLTLLASGYLYKEIGAKLGLSVETVRTYVK 187

Query: 223 SIMRKTATKTRSGAIA 238
           +   K   ++R  A+A
Sbjct: 188 NACTKMHVRSRIEAVA 203


>gi|163843876|ref|YP_001628280.1| 3,4-dihydroxy-2-butanone kinase [Brucella suis ATCC 23445]
 gi|163674599|gb|ABY38710.1| 3,4-dihydroxy-2-butanone kinase [Brucella suis ATCC 23445]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|148560164|ref|YP_001258354.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC
           25840]
 gi|148371421|gb|ABQ61400.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC
           25840]
          Length = 213

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+
Sbjct: 149 LTPQQTRVLTMLTEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAV 200


>gi|78184142|ref|YP_376577.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168436|gb|ABB25533.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 239

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 27/114 (23%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG-----------------------REVE 192
           R+RL + G+L+  QA    S  +H   D  +TG                       RE +
Sbjct: 115 RERLGDGGVLSVLQA--MDSDGIHM--DPTITGVCQQSRRRPILDGPPLLSDVLSLREED 170

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +  G ++ EIA  L ++ +T+ + + S++RK   + R+ A+  A ++N+V
Sbjct: 171 VLRGLCRGLSNQEIADQLHLAIDTIKHAVTSLLRKLEARDRTQAVLIAFQHNLV 224


>gi|307315516|ref|ZP_07595067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|306898770|gb|EFN29428.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 234

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +T ++   L W SEGK+  EIA I  ++   VN ++ +  RK    T++ A A A +
Sbjct: 174 MTAKQALMLKWSSEGKSMSEIATIENMTYANVNFHMNNARRKLGASTQAQATALATK 230


>gi|271963063|ref|YP_003337259.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506238|gb|ACZ84516.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 215

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           L+A Y +   ++   H  +D   LT RE E L+ +  G T+DEIA  L +S  T   +++
Sbjct: 130 LIAEYAS---RAKPPHPSQDLGMLTDREREVLSLVGTGMTNDEIAGKLFMSPATAKTHVS 186

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
             M K   + R+  +  A  + +V
Sbjct: 187 RTMMKLHARDRAQLVVIAYESGLV 210


>gi|150003225|ref|YP_001297969.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|294776005|ref|ZP_06741501.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|149931649|gb|ABR38347.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|294450143|gb|EFG18647.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
          Length = 256

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 37/77 (48%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E  +L      MF    V     F LTGRE+E L  I  G  S EIA  L IS +TV+ +
Sbjct: 170 ECTVLNLRNGEMFSPGVVIMNPAFGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIH 229

Query: 221 IASIMRKTATKTRSGAI 237
             +++RK   +    AI
Sbjct: 230 RQNLLRKLGVQNSLEAI 246


>gi|153839891|ref|ZP_01992558.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260902461|ref|ZP_05910856.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|149746588|gb|EDM57576.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308109572|gb|EFO47112.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|328471379|gb|EGF42274.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 200

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 139 DLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 197


>gi|189424620|ref|YP_001951797.1| LuxR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189420879|gb|ACD95277.1| two component transcriptional regulator, LuxR family [Geobacter
           lovleyi SZ]
          Length = 199

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E +  ++ G +S  I   LGIS  TV+N+  +IM K    T +  + YAV+
Sbjct: 139 LTDREREVIRLVACGMSSRLIGETLGISNKTVDNHRTNIMGKLHIHTTAELVRYAVK 195


>gi|153948784|ref|YP_001400250.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960279|gb|ABS47740.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 31758]
          Length = 209

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 148 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 206


>gi|326802259|ref|YP_004320078.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326553023|gb|ADZ81408.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 36/69 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +D++LT RE   L ++  G +   I   LGIS  T+ +++  + RK    + +  +
Sbjct: 146 VKINRDYQLTLREKTILNYLVNGLSYKMIGHELGISYETIRSHMKKVYRKLEVSSLTEVV 205

Query: 238 AYAVRNNIV 246
           A A++  IV
Sbjct: 206 AKAIKQEIV 214


>gi|298241316|ref|ZP_06965123.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554370|gb|EFH88234.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 215

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+ RE E L  +++G  + EIA  L +S  +V NY+++++ K     R+ AI  A
Sbjct: 153 ELSQREREILALLAQGCKNAEIAERLVVSPKSVRNYVSNVISKLQVADRAQAILRA 208


>gi|291437530|ref|ZP_06576920.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340425|gb|EFE67381.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 268

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           F+L+ RE E +  I+ G  + +IA    IS  TV N+I  I  K  + +RS A A
Sbjct: 200 FQLSTREAEIMDLIASGMNNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAA 254


>gi|221200509|ref|ZP_03573551.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
 gi|221206190|ref|ZP_03579204.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221174202|gb|EEE06635.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221179850|gb|EEE12255.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
          Length = 209

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L +++EG  +  IA  LG+S  TV  +I +I R      R+ A A   +  +
Sbjct: 149 LTPRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|209515667|ref|ZP_03264531.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
 gi|209503903|gb|EEA03895.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
          Length = 489

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE + L  IS G ++ EIA  L +S +TV  ++ S+ RK    TR+ A
Sbjct: 429 LSARETDVLRAISLGASNKEIARELTLSPSTVRTHVESVFRKLGCSTRAAA 479


>gi|144899605|emb|CAM76469.1| DNA-binding response regulator, LuxR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 228

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  + EG+T+ EIA+ L +   T+  ++ ++ RK     R+ A+  A+ + 
Sbjct: 159 KLSRRESEILALLVEGRTNKEIAIALELQEITIKVHLRNVYRKIGAANRAQAVRIAMSSG 218


>gi|118477263|ref|YP_894414.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118416488|gb|ABK84907.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 233

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+  S +     D  L T RE+  +
Sbjct: 128 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMGSKEDECKIDTSLFTERELSII 181

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 182 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226


>gi|320353838|ref|YP_004195177.1| PAS sensor protein [Desulfobulbus propionicus DSM 2032]
 gi|320122340|gb|ADW17886.1| PAS sensor protein [Desulfobulbus propionicus DSM 2032]
          Length = 284

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT +E+E  T + +GK+S EIA +LG+S  TV+ +   + RK
Sbjct: 225 LTPQEIEVATMVRQGKSSQEIADVLGVSVATVSFHRKKLRRK 266


>gi|295133281|ref|YP_003583957.1| bacterial regulatory proteins, luxR family [Zunongwangia profunda
           SM-A87]
 gi|294981296|gb|ADF51761.1| bacterial regulatory proteins, luxR family [Zunongwangia profunda
           SM-A87]
          Length = 52

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EG TS EI+     S NTV  +  +I+ KT  KT +GA+ YA+ + +
Sbjct: 1   MGEGLTSKEISEQFFSSVNTVETHRKNILLKTVEKTTTGAVKYAIESGL 49


>gi|260565891|ref|ZP_05836361.1| glycerone kinase [Brucella suis bv. 4 str. 40]
 gi|260155409|gb|EEW90489.1| glycerone kinase [Brucella suis bv. 4 str. 40]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|269836233|ref|YP_003318461.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785496|gb|ACZ37639.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 223

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+  L  ++ G  + +IA  L ++ +TV N ++++ +K   + R+ A+ +A+   
Sbjct: 155 QLTQRELTLLRLLANGYNNRQIAEQLQLAESTVKNNLSALFQKIGVRDRTQAVLFAISQG 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|152965963|ref|YP_001361747.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360480|gb|ABS03483.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE+E L  I+  +++ EIA  L +S  TV  ++A ++ K   + R  A+  A
Sbjct: 159 DLTPRELEVLRHIAGARSNAEIAAHLFLSEATVKTHVARVLAKLGVRDRVHAVVLA 214


>gi|326771785|ref|ZP_08231070.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
 gi|326637918|gb|EGE38819.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
          Length = 203

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L   + G  + EIA  L +   TV NY++S + KT  + R+ A   A  N 
Sbjct: 143 LTEREKEVLLAAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201


>gi|288927582|ref|ZP_06421429.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330416|gb|EFC69000.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 198

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I +G  + EIA  L I   TV  +  +IM K   K+ S    YAV +  
Sbjct: 133 LSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 192

Query: 246 V 246
           V
Sbjct: 193 V 193


>gi|257483366|ref|ZP_05637407.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|330887959|gb|EGH20620.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 262

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S+G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 191 KLSPRQLDVARLVSKGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 247


>gi|302535883|ref|ZP_07288225.1| response regulatory protein [Streptomyces sp. C]
 gi|302444778|gb|EFL16594.1| response regulatory protein [Streptomyces sp. C]
          Length = 207

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L  ++ G  + +IA  L IS  TV  ++  I  K    TR+GA+A A
Sbjct: 145 LTDRELDILGQLARGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVA 199


>gi|256061671|ref|ZP_05451810.1| dihydroxyacetone kinase family protein [Brucella neotomae 5K33]
 gi|261325681|ref|ZP_05964878.1| glycerone kinase [Brucella neotomae 5K33]
 gi|261301661|gb|EEY05158.1| glycerone kinase [Brucella neotomae 5K33]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|254702342|ref|ZP_05164170.1| 3,4-dihydroxy-2-butanone kinase [Brucella suis bv. 5 str. 513]
 gi|254708282|ref|ZP_05170110.1| 3,4-dihydroxy-2-butanone kinase [Brucella pinnipedialis M163/99/10]
 gi|254710656|ref|ZP_05172467.1| 3,4-dihydroxy-2-butanone kinase [Brucella pinnipedialis B2/94]
 gi|256032150|ref|ZP_05445764.1| 3,4-dihydroxy-2-butanone kinase [Brucella pinnipedialis M292/94/1]
 gi|256370041|ref|YP_003107552.1| dihydroxyacetone kinase family protein [Brucella microti CCM 4915]
 gi|261315783|ref|ZP_05954980.1| glycerone kinase [Brucella pinnipedialis M163/99/10]
 gi|261318228|ref|ZP_05957425.1| glycerone kinase [Brucella pinnipedialis B2/94]
 gi|261752906|ref|ZP_05996615.1| glycerone kinase [Brucella suis bv. 5 str. 513]
 gi|265989259|ref|ZP_06101816.1| glycerone kinase [Brucella pinnipedialis M292/94/1]
 gi|294852936|ref|ZP_06793609.1| dihydroxyacetone kinase domain-containing protein [Brucella sp.
           NVSL 07-0026]
 gi|256000204|gb|ACU48603.1| dihydroxyacetone kinase family protein [Brucella microti CCM 4915]
 gi|261297451|gb|EEY00948.1| glycerone kinase [Brucella pinnipedialis B2/94]
 gi|261304809|gb|EEY08306.1| glycerone kinase [Brucella pinnipedialis M163/99/10]
 gi|261742659|gb|EEY30585.1| glycerone kinase [Brucella suis bv. 5 str. 513]
 gi|264661456|gb|EEZ31717.1| glycerone kinase [Brucella pinnipedialis M292/94/1]
 gi|294821525|gb|EFG38524.1| dihydroxyacetone kinase domain-containing protein [Brucella sp.
           NVSL 07-0026]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|77456868|ref|YP_346373.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77380871|gb|ABA72384.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 269

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 32/50 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +L+ R+++    + +G+T+ +IA  LGI+ NTV  Y++ ++R T    R+
Sbjct: 199 QLSPRQLDVARLVGKGQTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 248


>gi|118581564|ref|YP_902814.1| two component LuxR family transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118504274|gb|ABL00757.1| two component transcriptional regulator, LuxR family [Pelobacter
           propionicus DSM 2379]
          Length = 203

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 27/43 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           ELT RE E L  I+ G T+  IA  LGIS  TVNN+  ++M K
Sbjct: 142 ELTEREREILGLIAHGCTNRMIAQHLGISIKTVNNHRTNLMGK 184


>gi|320161120|ref|YP_004174344.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994973|dbj|BAJ63744.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 355

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+ E L ++ EGK + +IA + G+S  T+ N++  + R    ++R  A+ Y
Sbjct: 147 LTPRQQEILLYLWEGKDNQQIARLTGLSVKTIENHLTRLYRLLNVQSRLEAVNY 200


>gi|306843006|ref|ZP_07475634.1| dihydroxyacetone kinase family protein [Brucella sp. BO2]
 gi|306286829|gb|EFM58368.1| dihydroxyacetone kinase family protein [Brucella sp. BO2]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|306844626|ref|ZP_07477213.1| dihydroxyacetone kinase family protein [Brucella sp. BO1]
 gi|306275070|gb|EFM56833.1| dihydroxyacetone kinase family protein [Brucella sp. BO1]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|261218338|ref|ZP_05932619.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320813|ref|ZP_05960010.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923427|gb|EEX89995.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293503|gb|EEX96999.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 157

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+
Sbjct: 93  LTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAV 144


>gi|300771877|ref|ZP_07081748.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761263|gb|EFK58088.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 459

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 38/62 (61%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   ++++LT RE++ L  + EG ++ E+   L IS NTV  +++++  K   K+R+ A+
Sbjct: 390 VFLKENYQLTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQAL 449

Query: 238 AY 239
            +
Sbjct: 450 KF 451


>gi|269126984|ref|YP_003300354.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311942|gb|ACY98316.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 201

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L   + G   +EIA  L ++  TV NY+AS + K   + R  AI  A
Sbjct: 141 LTERELEVLRIAASGSGVEEIAATLFLTTGTVRNYLASAVSKLNARNRIDAIRIA 195


>gi|33151542|ref|NP_872895.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi
           35000HP]
 gi|33147762|gb|AAP95284.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi
           35000HP]
          Length = 213

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    +R  A
Sbjct: 149 LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|17986681|ref|NP_539315.1| deoxyribonucleoside regulator / dihydroxyacetone kinase [Brucella
           melitensis bv. 1 str. 16M]
 gi|256045241|ref|ZP_05448138.1| deoxyribonucleoside regulator / dihydroxyacetone kinase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|260565165|ref|ZP_05835649.1| glycerone kinase [Brucella melitensis bv. 1 str. 16M]
 gi|265991671|ref|ZP_06104228.1| glycerone kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|17982301|gb|AAL51579.1| deoxyribonucleoside regulator / dihydroxyacetone kinase [Brucella
           melitensis bv. 1 str. 16M]
 gi|260151233|gb|EEW86327.1| glycerone kinase [Brucella melitensis bv. 1 str. 16M]
 gi|263002455|gb|EEZ15030.1| glycerone kinase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|117927726|ref|YP_872277.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648189|gb|ABK52291.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 225

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT +E   L  I EG T+ +I   L ++  TV NY++SI+ K   + R+ A   AV +
Sbjct: 159 LTEQERRVLELIGEGLTNRQIGERLFLAEKTVKNYVSSILAKLGLQRRTQAAVLAVEH 216


>gi|329948190|ref|ZP_08295062.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328522923|gb|EGF50028.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 215

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G ++ EIA  L +  +TV +++  I+ K   + R  A+ +A RN +
Sbjct: 155 LTEREREVIQLLASGMSNAEIAAALVVETSTVKSHLTRILPKIGARDRVQAVVWAYRNGL 214


>gi|300727173|ref|ZP_07060591.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
 gi|299775559|gb|EFI72151.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
          Length = 199

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ +++G  + EIA  L I   TV  +  +I  K   K+ S    YAV +  
Sbjct: 134 LSDREIEVLSLVAQGHINKEIAEKLNIGLTTVITHRKNIQEKLGMKSVSALTIYAVMHGY 193

Query: 246 V 246
           V
Sbjct: 194 V 194


>gi|298253154|ref|ZP_06976946.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
 gi|297532549|gb|EFH71435.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
          Length = 246

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244
           L  +E++ +  +S+G T+++IA  LG+  NT+N +I  I +K     R  AI A+A   N
Sbjct: 159 LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218


>gi|227540152|ref|ZP_03970201.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240013|gb|EEI90028.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 465

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 38/62 (61%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   ++++LT RE++ L  + EG ++ E+   L IS NTV  +++++  K   K+R+ A+
Sbjct: 396 VFLKENYQLTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQAL 455

Query: 238 AY 239
            +
Sbjct: 456 KF 457


>gi|225853095|ref|YP_002733328.1| glycerone kinase [Brucella melitensis ATCC 23457]
 gi|256263418|ref|ZP_05465950.1| glycerone kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|225641460|gb|ACO01374.1| Glycerone kinase [Brucella melitensis ATCC 23457]
 gi|263093430|gb|EEZ17480.1| glycerone kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409641|gb|ADZ66706.1| glycerone kinase [Brucella melitensis M28]
 gi|326539345|gb|ADZ87560.1| glycerone kinase [Brucella melitensis M5-90]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|168699466|ref|ZP_02731743.1| two-component response regulator [Gemmata obscuriglobus UQM 2246]
          Length = 220

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  + +G T  EIA  L +S  TV  Y A +  KT  KTR+  + Y +   
Sbjct: 146 QLSRRETEVLELLVKGLTHQEIADQLFLSVKTVETYRARLREKTGLKTRADYVRYGLEAG 205

Query: 245 IV 246
           ++
Sbjct: 206 LL 207


>gi|160938403|ref|ZP_02085758.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438776|gb|EDP16533.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC
           BAA-613]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + +  +  G ++ EIA  L +S  TV NY+++I+ K   + R+    +AV+ N
Sbjct: 156 ELTKTEWKIIAQVEVGASNREIAEALKLSEGTVRNYLSTILNKLDLRDRTQLAIWAVQTN 215

Query: 245 I 245
           +
Sbjct: 216 V 216


>gi|114321869|ref|YP_743552.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228263|gb|ABI58062.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    ++EG  S EIA +L IS  TV NY + I  K A    +     A+R  +
Sbjct: 152 LSAREFEIFRLLAEGCGSAEIARLLNISYKTVANYGSGIREKLALNNVAEMTRLAIRAGV 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|85859978|ref|YP_462180.1| sensory domain-containing/LuxR family regulatory protein
           [Syntrophus aciditrophicus SB]
 gi|85723069|gb|ABC78012.1| sensory domain linked to a LuxR regulatory protein [Syntrophus
           aciditrophicus SB]
          Length = 716

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E++  + + EGKTS EIA IL   +  ++ +  +I +K     + G+++  +R+
Sbjct: 657 LTKTEIQIASLVREGKTSKEIAAILNSKKRVIDFHRENIRKKLGLNNKKGSLSILLRS 714


>gi|16519697|ref|NP_443817.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a
           [Sinorhizobium fredii NGR234]
 gi|2495425|sp|P55407|TRAR_RHISN RecName: Full=Probable transcriptional activator protein traR
 gi|7465594|pir||T02771 probable transcription activator traR - Rhizobium sp. plasmid
           pNGR234a
 gi|158429605|pdb|2Q0O|A Chain A, Crystal Structure Of An Anti-Activation Complex In
           Bacterial Quorum Sensing
 gi|158429606|pdb|2Q0O|B Chain B, Crystal Structure Of An Anti-Activation Complex In
           Bacterial Quorum Sensing
 gi|2182351|gb|AAB91637.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a
           [Sinorhizobium fredii NGR234]
          Length = 236

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ CL W S+GKT+   A + GI+  TV +Y+     K   ++    +A A    +
Sbjct: 176 LSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGL 235

Query: 246 V 246
           V
Sbjct: 236 V 236


>gi|13471833|ref|NP_103400.1| hypothetical protein mll1934 [Mesorhizobium loti MAFF303099]
 gi|14022577|dbj|BAB49186.1| mll1934 [Mesorhizobium loti MAFF303099]
          Length = 390

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           F+LT  E   L  I  G ++ E A+ LGI  NT+  ++  I  KT TK ++
Sbjct: 322 FDLTPAEARILLRIGSGLSASESALSLGIGENTLKTHLNRIFAKTGTKRQA 372


>gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 34/58 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            ELT  E   L +++ G ++ EIA  L +S+ TV +++++++ KT    R+    +A+
Sbjct: 152 IELTPTETRILQYVARGMSNREIAAELHVSQRTVESHVSNMLGKTGCHNRTELARWAI 209


>gi|260911715|ref|ZP_05918291.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634140|gb|EEX52254.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 206

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I +G  + EIA  L I   TV  +  +IM K   K+ S    YAV +  
Sbjct: 141 LSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 200

Query: 246 V 246
           V
Sbjct: 201 V 201


>gi|260428797|ref|ZP_05782774.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260419420|gb|EEX12673.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 206

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE+E L  +SEGK++ EIA  L ++  T+  ++ ++ RK     R+ A
Sbjct: 146 LTKRELEVLRGLSEGKSNKEIARDLDLTEPTIKLHMKTLYRKLEVNNRTQA 196


>gi|271968610|ref|YP_003342806.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511785|gb|ACZ90063.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 216

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ +  ++ G+T+ E+A  L +S +TV  ++ SI  K   + R    A+A  + +
Sbjct: 155 LTERELDVVRLVARGRTNQEVAAELFVSLSTVKTHLGSIQAKLGARNRVEIAAWAWESGV 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|220912826|ref|YP_002488135.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219859704|gb|ACL40046.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 226

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ +E + L  + +G T+ +I   L ++  TV NY++SI+ K   + R+ A  +  RN+
Sbjct: 164 LSAQEKKVLALVGQGLTNRQIGDELFLAEKTVKNYVSSILAKLGFERRTQAAVFVTRNS 222


>gi|33592739|ref|NP_880383.1| response regulatory protein [Bordetella pertussis Tohama I]
 gi|33572387|emb|CAE41947.1| response regulatory protein [Bordetella pertussis Tohama I]
 gi|332382154|gb|AEE67001.1| response regulatory protein [Bordetella pertussis CS]
          Length = 224

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE + L  I+ G T DEIA  L +SR+TV  ++  I RK    ++  AI  A
Sbjct: 163 LSPRERQVLERITLGYTYDEIASELEVSRHTVQTFVRRIYRKLQVHSKVDAINAA 217


>gi|238783876|ref|ZP_04627894.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
 gi|238715263|gb|EEQ07257.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
          Length = 209

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A
Sbjct: 148 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199


>gi|332670939|ref|YP_004453947.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332339977|gb|AEE46560.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 218

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT  E+  L  I EG ++ EIA  LG++  TV N+I S++ K   + R+   A+
Sbjct: 150 LTPSELRVLDLIGEGLSNREIAERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 203


>gi|260459597|ref|ZP_05807851.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034399|gb|EEW35656.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE E L  +S+G T+ +IA   GIS NTV  ++ ++  K   + R+ A+A   R
Sbjct: 155 QLTVRERELLAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVALYSR 212


>gi|296141417|ref|YP_003648660.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296029551|gb|ADG80321.1| transcriptional regulator, LuxR family [Tsukamurella paurometabola
           DSM 20162]
          Length = 286

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT REV+ L  ++ G T+ E+A  L I   TV  Y+ S  +K  T+TR
Sbjct: 225 LTAREVDVLAQVALGCTNAEVAQRLSIGAETVKAYLRSAGQKLGTRTR 272


>gi|297196862|ref|ZP_06914259.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
 gi|197711546|gb|EDY55580.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
          Length = 856

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE+  L  +    T  EI   + +S NTV  Y  S+ RK    +R  A+A A
Sbjct: 795 ELTDRELSILRALQGSATQREIGAAMFLSINTVKAYNKSLYRKLGVASRQDAVAAA 850


>gi|161619564|ref|YP_001593451.1| 3,4-dihydroxy-2-butanone kinase [Brucella canis ATCC 23365]
 gi|161336375|gb|ABX62680.1| 3,4-dihydroxy-2-butanone kinase [Brucella canis ATCC 23365]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|71737875|ref|YP_276535.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71558428|gb|AAZ37639.1| DNA binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 258

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S+G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 187 KLSPRQLDVARLVSKGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 243


>gi|54022870|ref|YP_117112.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014378|dbj|BAD55748.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 211

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 151 LTPRELEVLRLLARGYTYREIAETLFISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 210


>gi|21218963|ref|NP_624742.1| two-component response regulator [Streptomyces coelicolor A3(2)]
 gi|6138889|emb|CAB59718.1| putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 219

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    +++GK+  EIA  L +S  TV  ++     K   + R+  +A+A R+ +
Sbjct: 155 LTAREREVTALVADGKSDKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 214

Query: 246 V 246
            
Sbjct: 215 A 215


>gi|88855696|ref|ZP_01130359.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88815020|gb|EAR24879.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 225

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L  ++ G ++ EIA  L I+ +TV  ++AS+M K   + R
Sbjct: 158 LTAREEEVLATVARGLSNSEIASELHITVSTVKTHLASLMTKLGVRNR 205


>gi|86135201|ref|ZP_01053783.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
 gi|85822064|gb|EAQ43211.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
          Length = 213

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + KS +     D  L  RE+E L       T  E+A  + +S  T++ Y  ++  K   +
Sbjct: 137 LMKSVNGVLKDDVVLKPREIEFLKLACTEMTYKEVADKMCLSPKTIDGYREALFAKLNVR 196

Query: 232 TRSGAIAYAVRNNI 245
            R G + YAVRN I
Sbjct: 197 NRVGMVIYAVRNKI 210


>gi|271963284|ref|YP_003337480.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506459|gb|ACZ84737.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EIA  L ++  TV  ++  ++ K   + R+  + YA  + +
Sbjct: 151 LTAREREVLVLVARGLSNMEIADRLDLAEATVKTHLGRVLAKLGLRDRAQVVVYAYESGL 210

Query: 246 V 246
           V
Sbjct: 211 V 211


>gi|257095255|ref|YP_003168896.1| two component LuxR family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047779|gb|ACV36967.1| two component transcriptional regulator, LuxR family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 216

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           RI  R+      +L A     F +  V + +   LT RE +    +SEG    E A IL 
Sbjct: 123 RIASRESFVSPDMLPALLDRHFPAGGVSFDR---LTQREFQVFKLLSEGHALPECADILN 179

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  TV+N+   I  K    + +     A+R  +V
Sbjct: 180 LSSKTVSNHFTQIRAKLGVDSPAEMARIAIRQGLV 214


>gi|256114193|ref|ZP_05454947.1| Glycerone kinase [Brucella melitensis bv. 3 str. Ether]
 gi|265995509|ref|ZP_06108066.1| glycerone kinase [Brucella melitensis bv. 3 str. Ether]
 gi|262766622|gb|EEZ12411.1| glycerone kinase [Brucella melitensis bv. 3 str. Ether]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|300022341|ref|YP_003754952.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524162|gb|ADJ22631.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 215

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I + KT+DEIA    +S  TV NY  +I  K   +T    + Y +R  +
Sbjct: 150 LSPREFEILRMILDEKTTDEIAQAFNLSPKTVANYHYAIKSKLGVRTDIELVYYCLRQGL 209


>gi|254714839|ref|ZP_05176650.1| dihydroxyacetone kinase family protein [Brucella ceti M644/93/1]
 gi|254717896|ref|ZP_05179707.1| dihydroxyacetone kinase family protein [Brucella ceti M13/05/1]
 gi|261219744|ref|ZP_05934025.1| glycerone kinase [Brucella ceti M13/05/1]
 gi|261322634|ref|ZP_05961831.1| glycerone kinase [Brucella ceti M644/93/1]
 gi|260924833|gb|EEX91401.1| glycerone kinase [Brucella ceti M13/05/1]
 gi|261295324|gb|EEX98820.1| glycerone kinase [Brucella ceti M644/93/1]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|253996438|ref|YP_003048502.1| two component LuxR family transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983117|gb|ACT47975.1| two component transcriptional regulator, LuxR family [Methylotenera
           mobilis JLW8]
          Length = 213

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 14/107 (13%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSY------------DVHWGKD--FELTGREVECLTWISE 199
           +L+  L +  LLA  +AN  K+Y             +    D    L+ RE E    ++E
Sbjct: 105 VLKSGLADDLLLAVREANSGKTYISPNIAQKIVMQSLAGAADPTERLSAREFEVFRLLAE 164

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G   D+IA++L +S+ TV NY   + +K         +  A+R  ++
Sbjct: 165 GSGVDDIALMLNVSQKTVANYQTILKQKLGITNAVELVRLAIRYGVI 211


>gi|254381845|ref|ZP_04997208.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340753|gb|EDX21719.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 205

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L     G T+ E+A  L +S  TV NY+++ ++K A++ R+ A+  A
Sbjct: 145 LTDREREVLRAAEFGATNAELAERLHLSPGTVRNYLSTAIQKLASRNRAEAVRVA 199


>gi|169827849|ref|YP_001698007.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992337|gb|ACA39877.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 145

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L  REV  L  + EG T+ EI+  L +++ T+ NY+++ ++K   ++R  A   A
Sbjct: 85  LNEREVAVLQLVKEGLTTHEISKQLFLTKGTIRNYLSTSIQKLQVESRQQAAQIA 139


>gi|166710233|ref|ZP_02241440.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|152980614|ref|YP_001353170.1| transcriptional regulator [Janthinobacterium sp. Marseille]
 gi|151280691|gb|ABR89101.1| transcriptional regulator [Janthinobacterium sp. Marseille]
          Length = 197

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ELT RE E    + +GKTS  IA  +G+S  TV  + A +MRK    T S
Sbjct: 132 ELTPREREIAALLVDGKTSKLIAKQIGLSPRTVEMHRAKLMRKFTATTSS 181


>gi|148560429|ref|YP_001259487.1| dihydroxyacetone kinase family protein [Brucella ovis ATCC 25840]
 gi|148371686|gb|ABQ61665.1| dihydroxyacetone kinase family protein [Brucella ovis ATCC 25840]
          Length = 694

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA-----SIMRKTATKTRSGAIAYA 240
           C  +  +G+T  EIA I+GISR TVN+Y+A      I+  +    R G++A A
Sbjct: 34  CWLYYEDGRTQGEIANIMGISRATVNSYLADARNRGIVNISIEPARLGSLAIA 86


>gi|114328570|ref|YP_745727.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316744|gb|ABI62804.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
          Length = 238

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE E    + +G++ +EIAVILG+S  T  +    I  K    + +  I YAV
Sbjct: 174 LSRREREVFDLLGQGRSLNEIAVILGVSYRTAAHAALQIRSKLGYNSAAALIKYAV 229


>gi|332141579|ref|YP_004427317.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551601|gb|AEA98319.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 211

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 34/53 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ELT ++++ L+++  G  + +IA  + ++  T+  +I++I+RK    TR+ A+
Sbjct: 150 ELTPKQIQVLSYLRAGLMNKQIAHEMNVTEATIKAHISAILRKLEINTRTQAV 202


>gi|289666156|ref|ZP_06487737.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670749|ref|ZP_06491824.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|262200127|ref|YP_003271335.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262083474|gb|ACY19442.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 410

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE E L  ++ G+ +  IA  LG+S NT+  ++ SI++K     R  A   A R  I
Sbjct: 348 LNPREREVLGHLALGRRNKSIAAELGVSENTIKFHVTSILQKLHVSNRGEAGLLAARAGI 407


>gi|257455373|ref|ZP_05620608.1| PAS domain containing response regulator, LuxR family
           [Enhydrobacter aerosaccus SK60]
 gi|257447335|gb|EEV22343.1| PAS domain containing response regulator, LuxR family
           [Enhydrobacter aerosaccus SK60]
          Length = 202

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +LT RE +   ++  G T  EI  +LG+S  T+  + A++M+K   +++ 
Sbjct: 123 QLTAREAQIAQYVVNGYTCKEIGKLLGLSPRTIEVHKANLMKKLGARSKG 172


>gi|302559481|ref|ZP_07311823.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302477099|gb|EFL40192.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 221

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    
Sbjct: 157 DLTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 216

Query: 245 IV 246
           +V
Sbjct: 217 LV 218


>gi|256377649|ref|YP_003101309.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921952|gb|ACU37463.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 189

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT ++   L  +++G  +  IA  L  S +TV N I  +  +   + R+ A+A+AVR  +
Sbjct: 129 LTAKQTAVLQLMADGLGNSAIAAALACSEHTVKNVIYELTARLRARNRAHAVAHAVRLGL 188

Query: 246 V 246
           V
Sbjct: 189 V 189


>gi|284041267|ref|YP_003391197.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283820560|gb|ADB42398.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 213

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+   +   ++ RE++ L  I++  +  +IA  L IS  TV  +   +M+K   +T  G 
Sbjct: 144 DLDKPQKITISKRELDVLKLIAQEFSGTQIAEKLFISPTTVETHRKHLMQKLGVQTTIGL 203

Query: 237 IAYAVRNNIV 246
           + YA++ N+V
Sbjct: 204 VKYAIKFNLV 213


>gi|149914863|ref|ZP_01903392.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b]
 gi|149811051|gb|EDM70888.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b]
          Length = 252

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           K   LT R+ E L W+ +GKT  +IAV++G++  TV  ++
Sbjct: 183 KGRTLTRRQREVLAWVGDGKTIQDIAVLMGLTPATVEKHL 222


>gi|83945712|ref|ZP_00958057.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83850913|gb|EAP88773.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 210

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE + L+ I  G  + E A  LG+S +T+  +I S+  K    TR+ A   A R
Sbjct: 149 DLTPRERDVLSLIGRGLRNAEAASALGLSEHTIAGHIKSVYSKLGISTRAEAALLASR 206


>gi|317405260|gb|EFV85592.1| LuxR family Two component transcriptional regulator [Achromobacter
           xylosoxidans C54]
          Length = 210

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE + L  ++EG  + EIA  L +SR TV  +I  I RK A  +R+ AI  A
Sbjct: 149 LSPREGQILRLVAEGLGNREIAEQLHLSRYTVECHIKHIYRKLAVSSRTRAIHTA 203


>gi|310815269|ref|YP_003963233.1| two-component regulator [Ketogulonicigenium vulgare Y25]
 gi|308754004|gb|ADO41933.1| two-component regulator [Ketogulonicigenium vulgare Y25]
          Length = 768

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           D   G    LT +E+  +  + EG T+ EIA +LG+S  TV  ++ ++ RK    TR+
Sbjct: 698 DSDRGAALGLTRQEMRAMYALIEGATNKEIAKLLGLSEATVKFHLKNLYRKLGCATRA 755


>gi|304404077|ref|ZP_07385739.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304347055|gb|EFM12887.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 220

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           F LT  E   +  I++G ++ EIA  L +S  TV NYI+ I+ K   + R+
Sbjct: 160 FGLTAAEQSIVRHIADGLSNKEIAASLFLSEGTVKNYISDILNKLELRDRT 210


>gi|291303089|ref|YP_003514367.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572309|gb|ADD45274.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++G ++ E+A  L +S  TV  ++A I+ K   + R  A+  A    +
Sbjct: 156 LTPRELEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLQLRDRVQAVIVAYETGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|257789986|ref|YP_003180592.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|317489430|ref|ZP_07947941.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830178|ref|ZP_08163635.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|257473883|gb|ACV54203.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|316911483|gb|EFV33081.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325487645|gb|EGC90083.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 487

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q ++ +S+         LT RE + L  + +G+T   IA  LG+S NT+  YI ++ +K+
Sbjct: 409 QVDLLRSF----AAAHALTARETDVLILLCQGRTRTYIADELGLSPNTIKGYIHNVYQKS 464

Query: 229 AT 230
           + 
Sbjct: 465 SA 466


>gi|84625936|ref|YP_453308.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188579161|ref|YP_001916090.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84369876|dbj|BAE71034.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188523613|gb|ACD61558.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|124266879|ref|YP_001020883.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124259654|gb|ABM94648.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 240

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE E L  ++EG ++  IA  LGI+  TV  ++ +++RK   ++R  A A+  R
Sbjct: 176 QLSARERETLALVAEGCSNKLIARQLGIAEATVKIHVQNLLRKLGLESRVHAAAWYAR 233


>gi|317503418|ref|ZP_07961460.1| transcriptional regulator [Prevotella salivae DSM 15606]
 gi|315665470|gb|EFV05095.1| transcriptional regulator [Prevotella salivae DSM 15606]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I++G  + EIA  L I   TV ++  +I+ K   K+ S    YAV +  
Sbjct: 149 LSDREIEVLSLIAQGFINKEIANQLNIGLTTVISHRKNIVEKLGMKSVSALTIYAVMHGY 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|288919627|ref|ZP_06413956.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349025|gb|EFC83273.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 218

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L  ++ G+T+ EIA  L IS  T   ++AS++ K   + R
Sbjct: 156 LTQREEEVLKLVAVGRTNAEIAAELFISLTTAKTHVASLLAKIGARNR 203


>gi|209552217|ref|YP_002284132.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539329|gb|ACI59261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 258

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE ECL   +EG ++ EI+ I+G S  TV  ++ +  +K   + R+ A+  A 
Sbjct: 192 LTERERECLRHSAEGFSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRAT 247


>gi|225155028|ref|ZP_03723524.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224804198|gb|EEG22425.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 217

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++E  T+ +IA  L IS  TV+N+  ++MRK      +    YAV   +
Sbjct: 151 LTDREREILQLVAESYTTKDIATKLDISAKTVDNHRTNLMRKLNLHDVASLTRYAVEIGL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|144898194|emb|CAM75058.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 209

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G  + EIA  L I+  TV  +   IM+K      +    YA+R  +
Sbjct: 148 LTAREMEVLRLIAQGLKNREIADTLSIAIKTVETHRTKIMQKLDLHNSAELATYAIRRGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|159899859|ref|YP_001546106.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892898|gb|ABX05978.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 461

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G +++EIA  L IS NTV  +I +I  K    +R+ A   AVR  +
Sbjct: 7   LSEREIEVLRQLALGASNNEIANTLVISPNTVKVHIRNIYAKLGVLSRAEATLEAVRRGL 66

Query: 246 V 246
           +
Sbjct: 67  I 67


>gi|15807682|ref|NP_285334.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460582|gb|AAF12288.1|AE001862_114 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 211

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           W     LT RE++ L     G+++  IA  LGI   TV NY++  + K   + R+ A
Sbjct: 145 WDAQSPLTEREIQVLRAAETGRSTAAIAAELGIGVGTVRNYLSEAIGKLGAENRAEA 201


>gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 225

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT  E++ + +++ G  + EIA  L +S+ TV +++++++ KT    R+    +A+ 
Sbjct: 162 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 221

Query: 243 NNIV 246
           N + 
Sbjct: 222 NQMA 225


>gi|330987589|gb|EGH85692.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331012581|gb|EGH92637.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 258

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S+G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 187 KLSPRQLDVARLVSKGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 243


>gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 225

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT  E++ + +++ G  + EIA  L +S+ TV +++++++ KT    R+    +A+ 
Sbjct: 162 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 221

Query: 243 NNIV 246
           N + 
Sbjct: 222 NQMA 225


>gi|283782308|ref|YP_003373063.1| two component LuxR family transcriptional regulator [Pirellula
           staleyi DSM 6068]
 gi|283440761|gb|ADB19203.1| two component transcriptional regulator, LuxR family [Pirellula
           staleyi DSM 6068]
          Length = 229

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +SEG+++ EIA  L IS  +V   ++ +  K    T +  + +A    +
Sbjct: 154 LTHREIEVLRQLSEGRSNREIAQSLDISLRSVEKEVSDLKEKVQMSTINELLMFAANEGL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|291302292|ref|YP_003513570.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571512|gb|ADD44477.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 210

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L+ I  G ++ +I   LG++  TV  +++ I+ K   ++R  A   A  N I
Sbjct: 150 LTQREIEVLSHIGRGLSNADIGKDLGMAEATVKTHVSRILSKLELQSRVQAAILAQENGI 209


>gi|254467347|ref|ZP_05080758.1| nitrate/nitrite response regulator protein, putative
           [Rhodobacterales bacterium Y4I]
 gi|206688255|gb|EDZ48737.1| nitrate/nitrite response regulator protein, putative
           [Rhodobacterales bacterium Y4I]
          Length = 204

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 35/55 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L+ RE   L  +S+G T+ E++  L IS NTV  +++++  K + K R+ AIA+
Sbjct: 135 QLSRRERTMLEALSKGLTNKELSKELEISTNTVKFHLSNLYEKLSVKNRAQAIAF 189


>gi|241518233|ref|YP_002978861.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862646|gb|ACS60310.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 236

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DF  + RE  CL W +EG     IA + G++ +TV   +  +  K    T+  A+A A R
Sbjct: 173 DFIFSDREALCLRWAAEGLPMHSIADVTGLTYHTVRWDLDRVKAKLGVYTQKQAVAVASR 232

Query: 243 NNIV 246
             ++
Sbjct: 233 FGLI 236


>gi|108805868|ref|YP_645805.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108767111|gb|ABG05993.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 226

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R+++ L  IS GKT  EI+  L +S  TV N++ +++R     ++  A+A A
Sbjct: 164 LTPRQLDVLQLISRGKTVREISQELYLSEATVRNHVGAVLRALDAHSQLEAVARA 218


>gi|332701939|ref|ZP_08422027.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552088|gb|EGJ49132.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 215

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK+  L+ RE E L  I++G ++DE+   L IS +TV  ++ +I  K     R  A  +A
Sbjct: 151 GKEM-LSAREREVLLLIAQGLSNDEVGDKLCISLSTVKKHLCNIYAKLKISNRIQAAFWA 209

Query: 241 VRN 243
           V+N
Sbjct: 210 VQN 212


>gi|301060636|ref|ZP_07201463.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300445248|gb|EFK09186.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 204

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT  E+     I +GKTS E+A ++G+S NTV+ +   I +K
Sbjct: 147 LTPTEIRVAVLIRKGKTSKEVAEVMGVSLNTVHGHRKKIRKK 188


>gi|299770091|ref|YP_003732117.1| response regulator [Acinetobacter sp. DR1]
 gi|298700179|gb|ADI90744.1| response regulator [Acinetobacter sp. DR1]
          Length = 239

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + LT RE E +  +S+G +  E+A +LGI   T+  ++ + MRK     R+
Sbjct: 181 YGLTPREQEVVHLVSKGLSDKEVASLLGIGFTTLRTHLNNAMRKIGCNNRT 231


>gi|283782679|ref|YP_003373433.1| transcriptional regulator, LuxR family [Gardnerella vaginalis
           409-05]
 gi|283441376|gb|ADB13842.1| transcriptional regulator, LuxR family [Gardnerella vaginalis
           409-05]
          Length = 246

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244
           L  +E++ +  +S+G T+++IA  LG+  NT+N +I  I +K     R  AI A+A   N
Sbjct: 159 LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218


>gi|167763338|ref|ZP_02435465.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC
           43183]
 gi|167698632|gb|EDS15211.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC
           43183]
          Length = 203

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  YA++  I
Sbjct: 136 LTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLNVNNAHEATKYAMKAGI 195

Query: 246 V 246
           V
Sbjct: 196 V 196


>gi|153007753|ref|YP_001368968.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559641|gb|ABS13139.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+
Sbjct: 149 LTPQQTRVLTMLAEGLLNKQIAYELGVSEATVKAHVSAVLQKLGVDSRTQAV 200


>gi|15806567|ref|NP_295281.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6459320|gb|AAF11120.1|AE001999_4 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 225

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E   L  ++ G+++ +IA   G+S  TV  +++ ++ K    +R+ A  YA++  I
Sbjct: 158 LTPKETAVLQLLARGQSNKDIAAEQGVSEATVKTHVSRLLSKLGLDSRTQAALYALKYGI 217


>gi|113970651|ref|YP_734444.1| LuxR family transcriptional regulator [Shewanella sp. MR-4]
 gi|114047880|ref|YP_738430.1| LuxR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113885335|gb|ABI39387.1| transcriptional regulator, LuxR family [Shewanella sp. MR-4]
 gi|113889322|gb|ABI43373.1| transcriptional regulator, LuxR family [Shewanella sp. MR-7]
          Length = 211

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 148 LTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|332885458|gb|EGK05707.1| hypothetical protein HMPREF9456_02509 [Dysgonomonas mossii DSM
           22836]
          Length = 245

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K  +LT RE+  L  I EG  S EI+  L IS +TVN +   I+ K        A+ YA
Sbjct: 180 KASDLTTREIAVLQLIKEGLLSKEISEQLFISVHTVNTHRQRILEKLDVNNSMEAVKYA 238


>gi|320162117|ref|YP_004175342.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995971|dbj|BAJ64742.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 212

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G T+  IAV LG+S  TV  + + +M K      +    +A+R+ +
Sbjct: 149 LTAREKQVLALLASGLTTQAIAVRLGVSPKTVETHRSHVMSKLDLYDIASLTRFALRHGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|290958798|ref|YP_003489980.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260648324|emb|CBG71435.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 256

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++ EIA  L +S +TV  ++ +++ K   + R  A+  A    +
Sbjct: 167 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRVQAVICAYETGL 226

Query: 246 V 246
           +
Sbjct: 227 I 227


>gi|302531315|ref|ZP_07283657.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440210|gb|EFL12026.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 218

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++G T+ +IA  L +S  TV N++ S +RK     R     YA+ + +
Sbjct: 156 LTDRETDVLRLVAKGLTARQIAERLVLSHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 215


>gi|163735511|ref|ZP_02142943.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           litoralis Och 149]
 gi|161391131|gb|EDQ15468.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           litoralis Och 149]
          Length = 221

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ +E   L  +S+G T+ E+A  L IS NTV  ++ ++  K + K R+ AIA+
Sbjct: 150 LSRKERATLDALSKGLTNRELAKELSISTNTVKFHLTNLYEKLSVKNRAQAIAF 203


>gi|157059906|dbj|BAF79713.1| putative two-component system response regulator [Streptomyces
           kasugaensis]
          Length = 215

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  +++G  + +IA  L IS  TV  ++  I  K    TR+GA+A A
Sbjct: 154 LTDRERDILAQLAQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVA 208


>gi|116671431|ref|YP_832364.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611540|gb|ABK04264.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24]
          Length = 545

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ GK +  IA  L +S  TV  +I++I  K   ++R  A  YA  + +
Sbjct: 484 LTPREIEVLRLVAAGKANRVIAGELYLSEKTVARHISNIFLKLGLRSRVAATRYAFEHGL 543

Query: 246 V 246
            
Sbjct: 544 A 544


>gi|325917495|ref|ZP_08179701.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536289|gb|EGD08079.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|319648196|ref|ZP_08002413.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2]
 gi|317389831|gb|EFV70641.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2]
          Length = 213

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +LL  KG ++  D     GLL   + +   S D H      LT  E++ L  ++ GKT+ 
Sbjct: 119 ILLCLKGDVLFPD-----GLLQKLRLDSDLSVDEH------LTDTELDILQKVASGKTNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S   V  +++ I +K    +R  A+      N++
Sbjct: 168 EIAADLQMSTRNVEYHLSKIYKKLKVTSRYCAVKKGTMLNLI 209


>gi|289627373|ref|ZP_06460327.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289647852|ref|ZP_06479195.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298488974|ref|ZP_07006997.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156472|gb|EFH97569.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330867161|gb|EGH01870.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330871049|gb|EGH05758.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 258

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S+G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 187 KLSPRQLDVARLVSKGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 243


>gi|227364555|ref|ZP_03848616.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|325682330|ref|ZP_08161847.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
 gi|227070392|gb|EEI08754.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|324978169|gb|EGC15119.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
          Length = 223

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G    L+ RE E L  I  G T+ EIA  + IS  TV  +   IM+K    + +  + Y
Sbjct: 155 LGNYVALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHY 214

Query: 240 AVRNNIV 246
           AV++ +V
Sbjct: 215 AVKHRLV 221


>gi|119774583|ref|YP_927323.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767083|gb|ABL99653.1| transcriptional regulator, LuxR family [Shewanella amazonensis
           SB2B]
          Length = 210

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 181 GKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           G+D+E     LT RE E L  +  G T+ +IA  L +S +T+  ++    RK    +R  
Sbjct: 137 GEDYEEDSEKLTIREREVLQALLSGSTNLDIANRLFVSESTIKTHLYRAFRKIGVSSRGQ 196

Query: 236 AIAYA 240
           AIA+A
Sbjct: 197 AIAWA 201


>gi|319942697|ref|ZP_08017003.1| hypothetical protein HMPREF9464_02222 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803707|gb|EFW00648.1| hypothetical protein HMPREF9464_02222 [Sutterella wadsworthensis
           3_1_45B]
          Length = 216

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LTGRE E +    +G  + EIA +LGIS  TV  Y A+  +K    T   A  +  R
Sbjct: 151 LTGREREVIDLAVKGMQNKEIADLLGISVTTVKMYRANAFQKLGVNTILAASQFLAR 207


>gi|164686850|ref|ZP_02210878.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM
           16795]
 gi|164604240|gb|EDQ97705.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM
           16795]
          Length = 826

 Score = 37.0 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           ++ KG    ++ + EI +L        K       K  EL+ RE+E     ++G T++EI
Sbjct: 729 IYEKGN--FKEAIDEIRILQKAYEEFLKFVKKEKSKVVELSERELEVANLAAQGFTNNEI 786

Query: 207 AVILGISRNTVNNYIASIMRKTATKTR 233
           A  L +S NTV   + ++ +K   K+R
Sbjct: 787 AKKLFVSVNTVKTILKAVFKKLCIKSR 813


>gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 246

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ +
Sbjct: 183 IDLTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEH 242

Query: 244 NI 245
            +
Sbjct: 243 GL 244


>gi|91225640|ref|ZP_01260714.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269967600|ref|ZP_06181651.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
 gi|91189760|gb|EAS76034.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269827795|gb|EEZ82078.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 153 DLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|21244897|ref|NP_644479.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294626449|ref|ZP_06705049.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294667013|ref|ZP_06732241.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21110608|gb|AAM39015.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|292599248|gb|EFF43385.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603230|gb|EFF46653.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|15966696|ref|NP_387049.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075968|emb|CAC47522.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
          Length = 237

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE++ L  I  G  +  IA  LG+S NTV  ++ +I +K   + R+ A +   RN+
Sbjct: 163 LTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFRND 221


>gi|308178849|ref|YP_003918255.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307746312|emb|CBT77284.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 229

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE   L  ++EGK++  IA +L +S  +V  YI SI +K
Sbjct: 155 LTDRERTVLAAVAEGKSNQAIAALLFLSEASVEKYITSIFQK 196


>gi|241763263|ref|ZP_04761320.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241367538|gb|EER61825.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 191

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT R+++ L  +  GK +  IA  LG+S NTV  ++A+I  +    +RS
Sbjct: 143 LTARQLDVLLQLCTGKPNKVIARNLGLSENTVRVHVAAIFAQLGVNSRS 191


>gi|239942277|ref|ZP_04694214.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988743|ref|ZP_04709407.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445736|ref|ZP_06585126.1| response regulatory protein [Streptomyces roseosporus NRRL 15998]
 gi|291348683|gb|EFE75587.1| response regulatory protein [Streptomyces roseosporus NRRL 15998]
          Length = 214

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  +S+G  + +IA  L IS  TV  ++  I  K    TR+GA++ A
Sbjct: 153 LTDRERDILAQLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVA 207


>gi|271965920|ref|YP_003340116.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509095|gb|ACZ87373.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 219

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    ++ G ++DEIAV + IS  T   +++  M K   + R+  + +A  + +
Sbjct: 154 LTNREREVTALVARGLSNDEIAVHMVISPTTAKTHVSRAMTKLRARDRAQLVVFAYESGL 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|296123997|ref|YP_003631775.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296016337|gb|ADG69576.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 217

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E L  I+ G  + EIA  L IS  TV  Y +  M+K + + R+  + +A++
Sbjct: 153 LSERETEVLKLIAAGHMAKEIAAKLDISLKTVETYKSRGMQKLSLRGRTELVRFAMK 209


>gi|187924738|ref|YP_001896380.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715932|gb|ACD17156.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 181

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 26/46 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ELT RE E    +  GKTS +I   L IS  TV+ Y A +MRK  T
Sbjct: 123 ELTPREREIAAQLVTGKTSKQIGRALDISPRTVDVYRARLMRKYDT 168


>gi|186474727|ref|YP_001863698.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184198686|gb|ACC76648.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 210

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G++ +EIA    +S  T++ Y   +M+K      +  I YA+R+ +
Sbjct: 148 LSDREFQVLQMLAAGRSINEIADACALSAKTISTYKTRLMQKLGFSNNAEVIRYAIRHGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|21233483|ref|NP_639400.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770447|ref|YP_245209.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115332|gb|AAM43282.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575779|gb|AAY51189.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|323358984|ref|YP_004225380.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323275355|dbj|BAJ75500.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 556

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT R+ E    I+ G  + EIA +L +S  TV N+++ I+R+   ++R
Sbjct: 494 LTPRQREIARLIARGLRNSEIARVLSVSDKTVENHVSEILRRLGRRSR 541


>gi|290956290|ref|YP_003487472.1| respose regulatory protein [Streptomyces scabiei 87.22]
 gi|260645816|emb|CBG68907.1| putative respose regulatory protein [Streptomyces scabiei 87.22]
          Length = 238

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  ++ G  + EIA  L IS  TV  ++  I  K   +TR+GA+A A
Sbjct: 177 LSEREHEILGQLARGLGNREIARALFISEATVKTHLGRIYAKLGVETRAGAVAVA 231


>gi|238788099|ref|ZP_04631894.1| Two component transcriptional regulator, LuxR family [Yersinia
           frederiksenii ATCC 33641]
 gi|238723686|gb|EEQ15331.1| Two component transcriptional regulator, LuxR family [Yersinia
           frederiksenii ATCC 33641]
          Length = 194

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A
Sbjct: 133 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 184


>gi|213963027|ref|ZP_03391286.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
 gi|213954368|gb|EEB65691.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
          Length = 235

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE E LT  S+G +S EIA  L IS  TVN +  +I  K   ++   AI  A + 
Sbjct: 173 FTLTPREKEILTLASQGFSSKEIAEKLFISTYTVNRHRQNIREKFNAESLIEAIDIARKK 232

Query: 244 NIV 246
            ++
Sbjct: 233 GVL 235


>gi|196233743|ref|ZP_03132582.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222105|gb|EDY16636.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 249

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E L W+ +GK+   IA  L  S  T+  Y   +  K   ++ S  IA+A R
Sbjct: 169 LSNRELEVLEWMGQGKSVKAIAQRLERSAKTIETYRQRLKEKLNIESNSELIAHAAR 225


>gi|24374266|ref|NP_718309.1| LuxR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24348793|gb|AAN55753.1|AE015711_10 transcriptional regulator, LuxR family [Shewanella oneidensis MR-1]
          Length = 211

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 148 LTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|78049832|ref|YP_366007.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78038262|emb|CAJ26007.1| two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 225

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT  E++ + +++ G  + EIA  L +S+ TV +++++++ KT    R+    +A+ 
Sbjct: 162 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 221

Query: 243 NNIV 246
           N + 
Sbjct: 222 NQMA 225


>gi|302521872|ref|ZP_07274214.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Streptomyces sp. SPB78]
 gi|302430767|gb|EFL02583.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Streptomyces sp. SPB78]
          Length = 274

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  I +G ++ EIA  L +S +TV  +++ ++ KT  ++R+ A   A RN 
Sbjct: 214 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLA-RNT 272

Query: 245 I 245
           +
Sbjct: 273 L 273


>gi|239906056|ref|YP_002952795.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239795920|dbj|BAH74909.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 218

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  + EG ++ E+A  L IS  T  ++  S+MRK   +     + YA +  +
Sbjct: 157 LTPREREVMRLVVEGLSNKEVAAALEISVKTAEHHRGSLMRKLGMQNSVELVRYATKLGL 216

Query: 246 V 246
           +
Sbjct: 217 I 217


>gi|160938544|ref|ZP_02085898.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438531|gb|EDP16289.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC
           BAA-613]
          Length = 211

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  ++ G  + EIA  L ++  TV N I+ ++ K   K R+    +AV++N
Sbjct: 149 DLTPRERDIMRLVARGMDNREIAGALFLAEGTVRNNISRLLEKLKLKDRTQLAVFAVKHN 208

Query: 245 I 245
           +
Sbjct: 209 L 209


>gi|152987185|ref|YP_001347466.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150962343|gb|ABR84368.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 207

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 180 WGKDFELTGR----EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +  D EL GR    EV  L ++S+G ++ +I+  + IS  TV+ Y A ++ K    +   
Sbjct: 137 YSDDVELLGRLSDREVSVLQYLSQGYSNKQISEQMFISNKTVSTYKARLLLKLNAGSLVD 196

Query: 236 AIAYAVRNNIV 246
            I +A RN ++
Sbjct: 197 LIEFAKRNALI 207


>gi|84687579|ref|ZP_01015454.1| transcriptional regulator, LuxR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664369|gb|EAQ10858.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 183

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           LT RE +    ++EG T+ EIA +LGIS  TV  + A ++ K   K
Sbjct: 124 LTERERQVAARLAEGLTAKEIARVLGISHRTVETHRAKLLVKMKAK 169


>gi|332706274|ref|ZP_08426342.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332354979|gb|EGJ34451.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 215

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT  E + + +++ G  + EIA  L +S+ T+ +++++++ KT    R+    +A+ 
Sbjct: 152 DVDLTPTERKVVQFVARGMANREIAQQLNVSQRTIESHVSNMLGKTGLHNRTELARWAIE 211

Query: 243 NNI 245
           N++
Sbjct: 212 NSM 214


>gi|332669021|ref|YP_004452029.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338059|gb|AEE44642.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ +E E    ++ G ++ EIA  +  S +TV  ++ SI+RK A + R   + +A  +
Sbjct: 160 LALSDKEREVFEAVARGLSNTEIAQAVLASESTVKTHVGSILRKLALRDRVQVVVFAHEH 219

Query: 244 NIV 246
            +V
Sbjct: 220 GLV 222


>gi|330998013|ref|ZP_08321844.1| hemerythrin HHE cation binding domain protein [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569314|gb|EGG51094.1| hemerythrin HHE cation binding domain protein [Paraprevotella
           xylaniphila YIT 11841]
          Length = 326

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G ++ EIA  L IS NTV  +  +I RK    + +G   YA+ N +
Sbjct: 259 LSDREKEVIVCVVKGMSNKEIAEQLYISVNTVMTHRRNISRKLQIHSPAGLTIYAIVNGL 318

Query: 246 V 246
           +
Sbjct: 319 I 319


>gi|325927987|ref|ZP_08189208.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325541672|gb|EGD13193.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|297193099|ref|ZP_06910497.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151643|gb|EFH31285.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 219

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++G ++ EIA  L ++ +T+  +++ ++ K   + R+ A  +A    
Sbjct: 155 DLTERETEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEAR 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|289624509|ref|ZP_06457463.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330869296|gb|EGH04005.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 261

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A
Sbjct: 186 KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQA 237


>gi|312200653|ref|YP_004020714.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231989|gb|ADP84844.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 203

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LTGRE + L    +G T  +IA  L +S  TV NY+++ + KT  + R
Sbjct: 143 LTGRERDVLVAARDGATVADIAGRLFLSEGTVRNYLSAAIAKTGARNR 190


>gi|269138467|ref|YP_003295167.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|267984127|gb|ACY83956.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|304558493|gb|ADM41157.1| Nitrate/nitrite response regulator protein [Edwardsiella tarda
           FL6-60]
          Length = 215

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT RE++ L  ++ G ++ +IA  L IS  TV  +I +++RK   ++R  A
Sbjct: 154 DLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIRNLLRKLNVRSRVAA 205


>gi|290958801|ref|YP_003489983.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260648327|emb|CBG71438.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 220

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +T RE + L  ++ G T+ EIA  L IS +TV  ++AS+M K   + R
Sbjct: 156 VTAREEQVLLSVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNR 203


>gi|256396266|ref|YP_003117830.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362492|gb|ACU75989.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE +   +++EG ++DEIA  L +S  TV  ++   M K   + R+  + +A R+ +
Sbjct: 161 LTDRERQITGFVAEGLSNDEIAARLVLSPATVKTHVNRAMVKVGARDRAQLVVFAHRSGL 220


>gi|284031067|ref|YP_003380998.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283810360|gb|ADB32199.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++LT RE E L  +++G ++ EIA  L +   T+  ++A+++ K   + R+ A+  A  +
Sbjct: 155 YDLTEREQEVLRLMAKGLSNAEIATELVLGVQTIKTHVANLLGKLGARDRTQAVILAYES 214

Query: 244 NIV 246
             V
Sbjct: 215 GFV 217


>gi|152981441|ref|YP_001352157.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281518|gb|ABR89928.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 197

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 26/47 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           L+GRE E L  I EGK +  IA  LGIS  TV  + A I  K   KT
Sbjct: 142 LSGREREVLDLILEGKMNKVIADKLGISMRTVEVHRAHIFDKMNVKT 188


>gi|21328680|gb|AAM48686.1| DNA-binding response regulator, LuxR family [uncultured marine
           proteobacterium]
          Length = 199

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           LT RE E L  + +GK + EIAV L +S+ T+  + A I  KT T+
Sbjct: 144 LTDREREVLEHLLKGKLNKEIAVDLNVSQRTIEAHRARIREKTRTR 189


>gi|117920952|ref|YP_870144.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117613284|gb|ABK48738.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3]
          Length = 211

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 148 LTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|331700012|ref|YP_004336251.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954701|gb|AEA28398.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 932

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +T RE + L  ++EG  + EIA  L +S  TV  ++  ++ KT ++ R+  +A A R
Sbjct: 872 VTSRETDVLLLVAEGCGNREIAERLFLSPRTVEKHVERLLAKTGSQRRAELVAAATR 928


>gi|320322715|gb|EFW78808.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320330500|gb|EFW86479.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330873726|gb|EGH07875.1| LuxR family DNA binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 258

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S+G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 187 KLSPRQLDVARLVSKGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 243


>gi|297158850|gb|ADI08562.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 231

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +LT +E   L  I EG T+  I   L ++  T+ NY++ ++ K   + RS A AY  
Sbjct: 132 RSADLTVQERRILLLIGEGLTNRAIGERLHLAEKTIKNYVSGLLAKLGMERRSQAAAYVA 191

Query: 242 R 242
           R
Sbjct: 192 R 192


>gi|288958810|ref|YP_003449151.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911118|dbj|BAI72607.1| two-component response regulator [Azospirillum sp. B510]
          Length = 223

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M  S     G   +LT R+ + L  + +GK++ +IA  LG++  TV  ++ +I+R    +
Sbjct: 152 MEDSAASGGGNGDQLTPRQRDVLVRLRDGKSNKQIAHELGLTEGTVKVHVTAILRHLGVR 211

Query: 232 TRSGA 236
            R+ A
Sbjct: 212 NRTQA 216


>gi|326315443|ref|YP_004233115.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372279|gb|ADX44548.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 254

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+ RE + L  I+ G ++ EIA  L I+  TV  ++  I+RK    +R  A  YA
Sbjct: 189 GGASPLSPREEDVLREIARGASNKEIARALDIAETTVKIHVQHILRKLGLSSRVQAAVYA 248


>gi|255523112|ref|ZP_05390084.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
 gi|255513227|gb|EET89495.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
          Length = 821

 Score = 36.6 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           I L   Y  N+  S +    +  +L+ RE+E LT   +G    EIA  L IS  TV  ++
Sbjct: 741 IDLSKQYNENILSSNE----EKVKLSQREIEILTLTVKGLKRSEIAAKLNISEGTVKTHL 796

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I +K     +  AI  A    IV
Sbjct: 797 QNIYKKLQVSGKFEAIKIAQMYGIV 821


>gi|182437835|ref|YP_001825554.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778470|ref|ZP_08237735.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466351|dbj|BAG20871.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658803|gb|EGE43649.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 214

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  +S+G  + +IA  L IS  TV  ++  I  K    TR+GA++ A
Sbjct: 153 LTDRERDILAQLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVA 207


>gi|154484706|ref|ZP_02027154.1| hypothetical protein EUBVEN_02423 [Eubacterium ventriosum ATCC
           27560]
 gi|149734554|gb|EDM50471.1| hypothetical protein EUBVEN_02423 [Eubacterium ventriosum ATCC
           27560]
          Length = 141

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 179 HWGKDFELTGREVECL-TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ++ + F L+ RE E L T +   K   EIA  L ISR  +  +I+++  KT TK+R G I
Sbjct: 70  NFVQQFSLSKRECEVLETLLKSDKNVKEIAQELYISRAALYRHISNMNEKTDTKSREGLI 129

Query: 238 AY 239
            +
Sbjct: 130 KF 131


>gi|148544128|ref|YP_001271498.1| two component LuxR family transcriptional regulator [Lactobacillus
           reuteri DSM 20016]
 gi|148531162|gb|ABQ83161.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri DSM 20016]
          Length = 217

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G    L+ RE E L  I  G T+ EIA  + IS  TV  +   IM+K    + +  + Y
Sbjct: 149 LGNYVALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHY 208

Query: 240 AVRNNIV 246
           AV++ +V
Sbjct: 209 AVKHRLV 215


>gi|88811077|ref|ZP_01126333.1| two-component system response regulator [Nitrococcus mobilis
           Nb-231]
 gi|88791616|gb|EAR22727.1| two-component system response regulator [Nitrococcus mobilis
           Nb-231]
          Length = 234

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  + +G ++  IA  LG+S+ TV  + A IMRKT     +  I  A+R ++
Sbjct: 145 LTAREWEVLIPMIKGSSNRMIAGELGLSKKTVEAHRARIMRKTEATNLAELIRIALRIDL 204

Query: 246 V 246
           +
Sbjct: 205 L 205


>gi|332292518|ref|YP_004431127.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170604|gb|AEE19859.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 212

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+ RE+E L  +S GK + EIA  L I+  TV+ Y   +++K   +  +  I +A
Sbjct: 149 KLSSREIEVLNLLSNGKRNKEIAAELDINEKTVSTYKMRLLKKLEAQNVAELIKHA 204


>gi|307292969|ref|ZP_07572815.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306881035|gb|EFN12251.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 263

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE +C   ++ GK+  EI+ ILG+S  +V  +++   ++     RS  +A A+
Sbjct: 179 LTRREAQCTALVAVGKSDWEISQILGLSETSVRYFVSHAKQRYGVYKRSELVARAL 234


>gi|300172495|ref|YP_003771660.1| xylose isomerase [Leuconostoc gasicomitatum LMG 18811]
 gi|299886873|emb|CBL90841.1| xylose isomerase [Leuconostoc gasicomitatum LMG 18811]
          Length = 448

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR-----NTVNNYIASIM 225
           N + S+D   G DFE     ++ L   +E KT DEI   L   R     +T+NNYI S++
Sbjct: 387 NRYASFDSGIGADFEAGKVTLKDLAAYAENKTDDEINATLQSGRQEQIKSTLNNYIFSVL 446

Query: 226 RK 227
            +
Sbjct: 447 GR 448


>gi|320009929|gb|ADW04779.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 222

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    
Sbjct: 158 DLTERETEVLVLIAQGLSNLEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|256377650|ref|YP_003101310.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921953|gb|ACU37464.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 206

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  ++EG+ + EIA  L  S  TV   +  I R+   + R+ A+AYA+R  +
Sbjct: 146 LSERERAVLALVAEGRETGEIAKELCYSPRTVTTVVHDITRRFRLRNRAHAVAYALRAGL 205


>gi|238752048|ref|ZP_04613532.1| Two component transcriptional regulator, LuxR family [Yersinia
           rohdei ATCC 43380]
 gi|238709748|gb|EEQ01982.1| Two component transcriptional regulator, LuxR family [Yersinia
           rohdei ATCC 43380]
          Length = 237

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A
Sbjct: 176 ELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 227


>gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 249

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + T RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ +
Sbjct: 186 IDFTAREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEH 245

Query: 244 NI 245
            +
Sbjct: 246 GL 247


>gi|313203941|ref|YP_004042598.1| transcriptional regulator [Paludibacter propionicigenes WB4]
 gi|312443257|gb|ADQ79613.1| transcriptional regulator [Paludibacter propionicigenes WB4]
          Length = 201

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L +S +TV ++  +I RK    + +G   YA+ N +
Sbjct: 133 LSAREKEIIICVVKGLTNKEIAQTLFLSTHTVISHRRNITRKLEIHSTAGLTVYAIMNKL 192

Query: 246 V 246
           +
Sbjct: 193 I 193


>gi|282856726|ref|ZP_06265990.1| two component transcriptional regulator, LuxR family
           [Pyramidobacter piscolens W5455]
 gi|282585422|gb|EFB90726.1| two component transcriptional regulator, LuxR family
           [Pyramidobacter piscolens W5455]
          Length = 215

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L   S+G    E+A  L I+  TV  +++S+  K   K ++ A+  A++N 
Sbjct: 142 QLSPREREVLLLSSQGFPVKEVAAKLFITERTVQAHLSSVYAKFGAKNKTEALIIALKNG 201

Query: 245 IV 246
           I+
Sbjct: 202 II 203


>gi|291298173|ref|YP_003509451.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567393|gb|ADD40358.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 220

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E +   ++G  ++EIA  L IS  T   +I+  M K A + R+  + YA  
Sbjct: 151 DERLTNREREVVVLAAQGLNNEEIAERLVISPTTAKTHISRAMIKLACRDRTQLVVYAYE 210

Query: 243 NNIV 246
           + ++
Sbjct: 211 SGLI 214


>gi|227823159|ref|YP_002827131.1| putative two component transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227342160|gb|ACP26378.1| putative two component transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 213

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE E L  ++ G ++ +IA   GIS NTV  ++ ++  K   + R+ A+A
Sbjct: 149 QLTARETELLGMLANGWSNTQIASRTGISENTVKYHLKNLYDKLEVRNRAMAVA 202


>gi|170781371|ref|YP_001709703.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155939|emb|CAQ01071.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 249

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG  + EIA  L +   TV  +++ ++ K   + R  A+ +A    I
Sbjct: 184 LTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYERGI 243

Query: 246 V 246
           V
Sbjct: 244 V 244


>gi|149371561|ref|ZP_01890977.1| two component transcriptional regulator, LuxR family protein
           [unidentified eubacterium SCB49]
 gi|149355188|gb|EDM43748.1| two component transcriptional regulator, LuxR family protein
           [unidentified eubacterium SCB49]
          Length = 211

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +L+ REVE L  +S GK + +IA  L I+  TV+ Y   +++K
Sbjct: 150 KLSSREVEVLNLLSSGKRNKDIATALKINEKTVSTYKTRLLKK 192


>gi|70732244|ref|YP_262000.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346543|gb|AAY94149.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 205

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT R+ E L  I++GKT+ EIA  L IS  TV  +++S++      +R+ A
Sbjct: 146 QLTTRQQEVLRLIAQGKTNKEIARELDISPFTVRIHVSSLLHTLKVPSRAAA 197


>gi|52082321|ref|YP_081112.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52787713|ref|YP_093542.1| hypothetical protein BLi04036 [Bacillus licheniformis ATCC 14580]
 gi|52005532|gb|AAU25474.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52350215|gb|AAU42849.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 210

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +LL  KG ++  D     GLL   + +   S D H      LT  E++ L  ++ GKT+ 
Sbjct: 116 ILLCLKGAVLFPD-----GLLQKLRLDSDLSVDEH------LTDTELDILQKVASGKTNK 164

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S   V  +++ I +K    +R  A+      N++
Sbjct: 165 EIAADLQMSTRNVEYHLSKIYKKLKVTSRYCAVKKGTMLNLI 206


>gi|38233207|ref|NP_938974.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199466|emb|CAE49117.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 231

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE+E L  ++ G T  EIA  L IS  TV  + ++I+RKT    R
Sbjct: 171 LTRRELEVLKLLARGYTYKEIAAELFISVKTVETHASNILRKTQQSNR 218


>gi|325830372|ref|ZP_08163829.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
 gi|325487839|gb|EGC90277.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
          Length = 213

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE   +  ++EG  + EIA  L +S  TV N+I++I++K   K R+
Sbjct: 155 LTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRT 203


>gi|298250652|ref|ZP_06974456.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297548656|gb|EFH82523.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 54

 Score = 36.6 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L  ++ G+T  E+A  L +SRNT+   ++SI RK     R+ AIA A R
Sbjct: 2   LRLLAAGQTYVEMAQTLIVSRNTIKTQVSSIYRKLGVSRRAEAIALAQR 50


>gi|282857278|ref|ZP_06266517.1| DNA-binding response regulator, LuxR family [Pyramidobacter
           piscolens W5455]
 gi|282584883|gb|EFB90212.1| DNA-binding response regulator, LuxR family [Pyramidobacter
           piscolens W5455]
          Length = 216

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G D  L+ RE++ L  + +G  + +IA  L IS+NTV+ +   I+ K    + +    
Sbjct: 146 EQGSDCPLSERELDVLKLLVKGCNAKQIAEQLSISKNTVDTHRRHILDKLGCNSMAELTR 205

Query: 239 YAVRNN 244
           YA+R  
Sbjct: 206 YAIREG 211


>gi|302547140|ref|ZP_07299482.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464758|gb|EFL27851.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 178

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  + +G  + EIA  LG+S  TV  ++++++ K    +R+  IA
Sbjct: 121 LTSRESEVLQLVRKGMANKEIARRLGLSEKTVKFHVSNVLAKAHVASRAQLIA 173


>gi|254741101|ref|ZP_05198789.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Kruger B]
          Length = 212

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+ +S +     D  L T RE+  +
Sbjct: 107 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKCLFTERELSII 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 161 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|94313637|ref|YP_586846.1| Two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357489|gb|ABF11577.1| Two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 264

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE   L  ++EG+++ ++ + + +S  T+  Y AS+MRK
Sbjct: 156 LTARERSVLKLVAEGRSNRQVGIYMNLSPKTIEKYRASLMRK 197


>gi|326559661|gb|EGE10074.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 46P47B1]
 gi|326559921|gb|EGE10320.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 103P14B1]
 gi|326561209|gb|EGE11574.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 7169]
 gi|326566300|gb|EGE16451.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 12P80B1]
 gi|326567904|gb|EGE18001.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC1]
 gi|326569517|gb|EGE19577.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC8]
 gi|326572718|gb|EGE22704.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC7]
 gi|326573892|gb|EGE23844.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 101P30B1]
 gi|326577343|gb|EGE27230.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis O35E]
          Length = 218

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            ELT RE++    I++G ++  I   LGI+ +TV  ++  I+ K   +TR     +AV
Sbjct: 157 HELTEREIQVAKMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAVWAV 214


>gi|320325633|gb|EFW81695.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 208

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y   ++ K    +    I  A RN +
Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|307296697|ref|ZP_07576516.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877826|gb|EFN09051.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 225

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LT R+ EC+  ++ GKT  EI+ ILGI + TV  ++
Sbjct: 157 LTERQAECVALVARGKTDWEISQILGIGQETVIQHV 192


>gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
 gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
          Length = 234

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ +
Sbjct: 171 IDLTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEH 230

Query: 244 NI 245
            +
Sbjct: 231 GL 232


>gi|300788348|ref|YP_003768639.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797862|gb|ADJ48237.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 223

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E LT ++ G ++ EIA  L +S  TV  ++  I+ K   + R  A+  A
Sbjct: 160 LTERELEVLTKLARGLSNAEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLA 214


>gi|289644029|ref|ZP_06476128.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289506154|gb|EFD27154.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 73

 Score = 36.6 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E    +  G  +++I   L IS  TV ++I +I+RK     RS AIA  +R+
Sbjct: 11  LTSREREVADLMCAGLPNEQIGERLVISPATVKSHIRAILRKLGAANRSHAIAIHLRH 68


>gi|256790030|ref|ZP_05528461.1| two-component response regulator [Streptomyces lividans TK24]
 gi|289773911|ref|ZP_06533289.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289704110|gb|EFD71539.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 223

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    +++GK+  EIA  L +S  TV  ++     K   + R+  +A+A R+ +
Sbjct: 159 LTAREREVTALVADGKSDKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 218

Query: 246 V 246
            
Sbjct: 219 A 219


>gi|121596081|ref|YP_987977.1| two component LuxR family transcriptional regulator [Acidovorax sp.
           JS42]
 gi|222112237|ref|YP_002554501.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|120608161|gb|ABM43901.1| two component transcriptional regulator, LuxR family [Acidovorax
           sp. JS42]
 gi|221731681|gb|ACM34501.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 209

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K      +    YA+RN +
Sbjct: 149 LSERELQTLVKIASGKRLSDIAEELMLSPKTVSVYRARVLEKLKLANNAELTVYAIRNRL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|17549731|ref|NP_523071.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
 gi|17431986|emb|CAD18663.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 232

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           F LT RE +    ++ G     IA  LGISR+TV  ++  + RKT T 
Sbjct: 169 FHLTRREADVADLLARGAGPALIARTLGISRDTVRTHLKHVYRKTNTH 216


>gi|332883601|gb|EGK03882.1| hypothetical protein HMPREF9456_01423 [Dysgonomonas mossii DSM
           22836]
          Length = 292

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE++ L  I+ G  + E+A  L IS NTV ++  +I  K   KT SG I Y +
Sbjct: 225 LSERELDVLRLIALGLLNKEVADKLNISLNTVLSHRKNITAKLGIKTVSGLIFYCI 280


>gi|297193607|ref|ZP_06911005.1| response regulatory protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151843|gb|EFH31371.1| response regulatory protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 207

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  ++ G  + EIA  L IS  TV  ++  I  K    TR+GA+A A
Sbjct: 146 LTDRERDILGQLARGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVA 200


>gi|317127262|ref|YP_004093544.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472210|gb|ADU28813.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 222

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             L  RE E L  I +GK + EIA  L +S  T+ NY +SI +K     R   + Y
Sbjct: 160 ISLYEREKEILAKIMDGKKNSEIARELYLSIGTIKNYTSSIYKKIGVSKRKELVEY 215


>gi|320008468|gb|ADW03318.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 218

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G ++ EIA  L IS  TV  ++  +  K   K R+ A+A A    I
Sbjct: 157 LSVREREVLRLVARGTSNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVATAYERGI 216

Query: 246 V 246
           +
Sbjct: 217 L 217


>gi|73541219|ref|YP_295739.1| LuxR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72118632|gb|AAZ60895.1| transcriptional regulator, LuxR family [Ralstonia eutropha JMP134]
          Length = 383

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K F LT  E+E    + +G T DE A  LGI +NT   ++  I  KT   TR   +   +
Sbjct: 317 KLFRLTPTEIELALLMMDGLTLDEAAGRLGIKKNTARAHLRGIFAKTGA-TRQAVLVKTL 375

Query: 242 RNNIV 246
            +++V
Sbjct: 376 LSSVV 380


>gi|37520382|ref|NP_923759.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211375|dbj|BAC88754.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 212

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G D  L+ RE+E L  I++G T+ EI   L I+  TV  ++++I+ K     R  A  
Sbjct: 144 QAGADNPLSEREMEVLKLIADGLTNAEIGRRLYIASGTVRVHVSNIIAKLGVNDRVQAAV 203

Query: 239 YAVRNN 244
            A+R  
Sbjct: 204 RALREG 209


>gi|298246648|ref|ZP_06970453.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549307|gb|EFH83173.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 920

 Score = 36.6 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++EG ++  IA  L +S  TV  ++ S+  K A   R+ A+A A
Sbjct: 860 LTPREQEVLYLLAEGASNQVIAERLVVSLTTVKKHVGSLFLKLAADNRTHAVALA 914


>gi|284042706|ref|YP_003393046.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946927|gb|ADB49671.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 81

 Score = 36.6 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE+E L  +++G  +  IA  LGI+  TV  ++ ++ R+     R  A  Y 
Sbjct: 15  GRLAALTPRELEVLRLVTKGDRTARIAQQLGITEPTVKRHLTNLYRRLDVTNRVQAATYY 74

Query: 241 VRN 243
           V++
Sbjct: 75  VQH 77


>gi|238025268|ref|YP_002909500.1| Autoinducer-binding domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237879933|gb|ACR32265.1| Autoinducer-binding domain protein [Burkholderia glumae BGR1]
          Length = 273

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT  E   L W  +GKTS E+A IL +S  TVN ++ +I+ K  T  ++
Sbjct: 212 LTEMEKTILRWTVDGKTSGELAEILQVSARTVNFHVQNILAKMNTCNKT 260


>gi|238020554|ref|ZP_04600980.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147]
 gi|237867534|gb|EEP68540.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147]
          Length = 224

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  ++ G ++  IA  L ++ +T+  ++ +I+RK    +R  A  +A+++ 
Sbjct: 150 QLTPRELETLGHLAAGYSNKAIAKNLNLAESTIKVHVQNILRKLKLDSRVQAAVFAIQHK 209

Query: 245 I 245
           +
Sbjct: 210 V 210


>gi|228953499|ref|ZP_04115544.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806238|gb|EEM52812.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 500

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K     +  A+  A+  
Sbjct: 437 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVSNKEEAVQKALEI 496

Query: 244 NIV 246
            I+
Sbjct: 497 GII 499


>gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 225

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT  E++ + +++ G  + EIA  L +S+ TV +++++++ KT    R+    +A+ 
Sbjct: 162 DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIE 221

Query: 243 NNIV 246
           N + 
Sbjct: 222 NQMA 225


>gi|167646051|ref|YP_001683714.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167348481|gb|ABZ71216.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 77

 Score = 36.6 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+EC+   + G T+ E A  + ++  TV  ++ + MRK     +  A+  A++  +
Sbjct: 15  LTAREIECIRLAALGLTTGETAQRIQVAERTVEFHLGNAMRKLGATNKLRAVVIAMQRKL 74

Query: 246 V 246
           +
Sbjct: 75  I 75


>gi|260904160|ref|ZP_05912482.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brevibacterium linens BL2]
          Length = 207

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ +T +++G  + E+A  L ++  TV  +++ I+ K   + R+  +  A  + 
Sbjct: 142 QLTDREIDVMTLVAKGHANAEVAEHLFLAEQTVKTHVSRILSKLGLRDRTQIVVAAYESG 201

Query: 245 IV 246
           +V
Sbjct: 202 LV 203


>gi|296112985|ref|YP_003626923.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis RH4]
 gi|295920679|gb|ADG61030.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis RH4]
 gi|326574060|gb|EGE24009.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis CO72]
          Length = 218

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            ELT RE++    I++G ++  I   LGI+ +TV  ++  I+ K   +TR     +AV
Sbjct: 157 HELTEREIQVAKMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAVWAV 214


>gi|302552868|ref|ZP_07305210.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470486|gb|EFL33579.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 268

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++ EIA  L +S +TV  ++ +++ K   + R  A+  A    +
Sbjct: 155 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|257790333|ref|YP_003180939.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|317489781|ref|ZP_07948280.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|257474230|gb|ACV54550.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|316911127|gb|EFV32737.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 213

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE   +  ++EG  + EIA  L +S  TV N+I++I++K   K R+
Sbjct: 155 LTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRT 203


>gi|261346507|ref|ZP_05974151.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM
           4541]
 gi|282565500|gb|EFB71035.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM
           4541]
          Length = 222

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 151 GRIILRDRLWE----IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           G  +LRD+ +     + L A        ++DV        T +E E +  + EG ++  I
Sbjct: 120 GISVLRDKPFTPQEVVRLNAILPIAELMTFDVLPDSLVSYTPKEQEIIHLVREGASNKRI 179

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           A++LGIS +TV  ++ +I  K     R+  ++
Sbjct: 180 ALLLGISLSTVKTHLRNIFTKANVSNRTELVS 211


>gi|254388484|ref|ZP_05003718.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814098|ref|ZP_06772741.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326442500|ref|ZP_08217234.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197702205|gb|EDY48017.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326697|gb|EFG08340.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 207

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  G    LT RE++ L  ++ G  + EIA  L IS  TV  ++  I  K    TR+GA+
Sbjct: 138 MRGGGRPSLTERELDILGQLARGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAV 197

Query: 238 AYA 240
           + A
Sbjct: 198 SVA 200


>gi|261409608|ref|YP_003245849.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261286071|gb|ACX68042.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 216

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           F LT  E   +  I+EG ++ EIA  L +S  TV NY+  I+ K   + R+
Sbjct: 154 FGLTPAEKRVVALIAEGLSNKEIAAQLYLSEGTVKNYVTEILGKLNLRDRT 204


>gi|167565819|ref|ZP_02358735.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
 gi|167572912|ref|ZP_02365786.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 215

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    I+ G+T  EIA  L +S  TV+ Y A I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVFRRIAAGETITEIAQALNVSAKTVSTYKARILEKMQMPHDAALVRYAMRHKL 208


>gi|89900824|ref|YP_523295.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345561|gb|ABD69764.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 212

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T R+ E L  + +G+++ EI+  L ++ +T  N++ +++R    K+R+  +  A R  
Sbjct: 145 QVTPRQAEVLALLLDGRSNKEISEALALTDDTTKNHVTALLRAFDVKSRTQLVLAASRQG 204


>gi|320534770|ref|ZP_08035192.1| putative nitrate/nitrite response regulator protein NarL
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133012|gb|EFW25538.1| putative nitrate/nitrite response regulator protein NarL
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 223

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EL  R  +  T + EG T+  IA  LGIS NTV  Y++ ++ +    +R+  IA A+ N
Sbjct: 165 ELPPRLQDIYTCLLEGLTNRRIARRLGISENTVRIYVSEVLHRLGHTSRTELIAAALGN 223


>gi|296389611|ref|ZP_06879086.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
          Length = 225

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    ++ G+   E+A  LG+S  TV+N+++ + +K    T++  +  A+ + +
Sbjct: 148 LTRREFEIFRLLARGQALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAELVHRAIDSGV 207

Query: 246 V 246
           +
Sbjct: 208 L 208


>gi|218680259|ref|ZP_03528156.1| transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 234

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ GKT +E+A + G+  N+V + I    ++    T    IA A+R  +
Sbjct: 174 LDPKEGTYLRWIAVGKTMEEVADLEGVKYNSVKSKIEETRKRLGIHTMPHLIALAIRAGL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|297202491|ref|ZP_06919888.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197709982|gb|EDY54016.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 212

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +++G ++ EIA  L IS  TV  ++  +  K   K R+ A+A A    I
Sbjct: 151 LSAREREVLALVAKGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGI 210

Query: 246 V 246
           +
Sbjct: 211 L 211


>gi|196232781|ref|ZP_03131632.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223241|gb|EDY17760.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 215

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE+E L  I  G+T+ EIA  L +   T++ Y A I  K      S  + +A+R
Sbjct: 153 LTDRELEVLELIGRGRTTREIATKLELGIATIDTYRARIKEKMDFNNASELLHFAIR 209


>gi|21222228|ref|NP_628007.1| two-component system response transcriptional regulator
           [Streptomyces coelicolor A3(2)]
 gi|5457253|emb|CAB46941.1| putative two-component system response transcriptional regulator
           [Streptomyces coelicolor A3(2)]
          Length = 218

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A A+  R
Sbjct: 156 LTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKLGMQRRSQAAAFVAR 212


>gi|325001931|ref|ZP_08123043.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 217

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ +E   L  I++G T+ +I   L ++  TV NY++SI+ K     R+ A  YAV
Sbjct: 155 LSPQEQRILELIADGLTNRQIGGELHLAEKTVKNYVSSILHKLGYARRTEAAVYAV 210


>gi|324997306|ref|ZP_08118418.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 226

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE + L  ++ G    EIA  L IS  TV  +++S++RKT T  R
Sbjct: 165 QLTKRERDVLRLLARGYAYKEIAGELFISVKTVETHVSSVLRKTQTSNR 213


>gi|269793700|ref|YP_003313155.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269095885|gb|ACZ20321.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 226

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  ++EG ++ EIA  L +S  TV  ++ +++ K   + R  A+  A  + 
Sbjct: 161 DLTPRETDVLRAVAEGLSNAEIAEQLVLSTTTVKTHVGNMLAKLGVRDRVQAVILAYESG 220

Query: 245 IV 246
           +V
Sbjct: 221 LV 222


>gi|302528110|ref|ZP_07280452.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302437005|gb|EFL08821.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 208

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G T+ E A  L IS  TV  ++     K   K R+ A+A A    +
Sbjct: 146 LSQREIEVLNLVARGSTNKEAAKKLFISEATVKTHLLHAYAKLGVKDRAAAVAVAFERGL 205

Query: 246 V 246
           +
Sbjct: 206 L 206


>gi|198277378|ref|ZP_03209909.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135]
 gi|198269876|gb|EDY94146.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135]
          Length = 215

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  I++G  + EIA +L +S NT+  +  S+M K   +     +  A+   
Sbjct: 149 QLTLREMEVLQAIAKGFNTREIAELLHVSNNTIETHRKSLMSKLEARNAVDLVLKAINLG 208

Query: 245 IV 246
           I+
Sbjct: 209 II 210


>gi|170728440|ref|YP_001762466.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC
           51908]
 gi|169813787|gb|ACA88371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Shewanella woodyi ATCC 51908]
          Length = 797

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ +E   +  +S+ + + EIA+ L IS  TV  ++ ++ RK   K+R  A+A    N
Sbjct: 736 LSIKESAIMALVSQQRRNKEIAIELDISEQTVKFHLKNVYRKLGVKSRKLAVAVLAEN 793


>gi|332140533|ref|YP_004426271.1| putative LuxR-family transcriptional regulator [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550555|gb|AEA97273.1| putative LuxR-family transcriptional regulator [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 198

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L+ I +G ++ EIA  LGI+  TV  Y+ +++ K   K R
Sbjct: 134 LTNRERDVLSCILDGLSNKEIARELGITERTVKEYVGTLLNKFQAKDR 181


>gi|328884073|emb|CCA57312.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 206

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  +  G  + EIA  L IS  TV  ++  I  K    TR+GA+A A
Sbjct: 145 LTDRERDILGQLGRGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVA 199


>gi|311893888|dbj|BAJ26296.1| putative LuxR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 117

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +  G ++ E+A  L +S  TV  ++A I  K   + R+ A+  A    +
Sbjct: 50  LTPRELEVLALLGRGLSTTELAGELTLSEATVKTHVARIFAKLGLRDRAQAVVVAYETGL 109

Query: 246 V 246
           V
Sbjct: 110 V 110


>gi|307300268|ref|ZP_07580048.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307321145|ref|ZP_07600549.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306893220|gb|EFN24002.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904434|gb|EFN35018.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 262

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE++ L  I  G  +  IA  LG+S NTV  ++ +I +K   + R+ A +   RN+
Sbjct: 188 LTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFRND 246


>gi|294010458|ref|YP_003543918.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673788|dbj|BAI95306.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 248

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LT R+ EC+  ++ GKT  EI+ ILGI + TV  ++
Sbjct: 180 LTERQAECVALVARGKTDWEISQILGIGQETVIQHV 215


>gi|221633529|ref|YP_002522754.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
 gi|221156816|gb|ACM05943.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
          Length = 257

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSD-EIAVILGISRNTVNNYIASIMRKTATK 231
           F    VH  +   LT RE E L  + +G TS+ E+A  L IS NTV  ++ +IM K   +
Sbjct: 173 FGREGVHRPEGPALTERERELLELLVQGVTSNRELAQRLFISENTVKYHLRNIMTKLHLE 232

Query: 232 TRSGAIAYAVRNNIV 246
            R+  IAYA+R  +V
Sbjct: 233 NRAQVIAYALRTGLV 247


>gi|152987067|ref|YP_001346289.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150962225|gb|ABR84250.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 212

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +  G TS E+A  L +S  TV+ Y A +MR+   +T +  +  A+   +
Sbjct: 143 LTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMRRMQAQTLADLVGMAIAAGL 202

Query: 246 V 246
           V
Sbjct: 203 V 203


>gi|94497063|ref|ZP_01303636.1| transcriptional regulator, LuxR family protein [Sphingomonas sp.
           SKA58]
 gi|94423435|gb|EAT08463.1| transcriptional regulator, LuxR family protein [Sphingomonas sp.
           SKA58]
          Length = 248

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LT R+ EC+  ++ GKT  EI+ ILGI + TV  ++
Sbjct: 180 LTERQAECVALVARGKTDWEISQILGIGQETVIQHV 215


>gi|54025844|ref|YP_120086.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017352|dbj|BAD58722.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 219

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 183 DFELTG-----REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           D EL+G     R+ E LT  + G+ +  +A + G+S  TVN+Y+  I +K A   R
Sbjct: 138 DPELSGVGLSPRQEEVLTLYASGEKASRVARLTGLSEQTVNDYLGRIRQKYADAGR 193


>gi|17158658|ref|NP_478169.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|17134607|dbj|BAB77165.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 240

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +  LT RE++    +++G T+ EIA  L IS+NTV   +  I RK     R+  +A
Sbjct: 176 EISLTPRELQMAALVAKGLTNAEIAAELWISQNTVKQTLKRIFRKLDVSARAEMVA 231


>gi|120598493|ref|YP_963067.1| response regulator receiver protein [Shewanella sp. W3-18-1]
 gi|120558586|gb|ABM24513.1| transcriptional regulator, LuxR family [Shewanella sp. W3-18-1]
          Length = 211

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 148 LTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|332710029|ref|ZP_08429984.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332351172|gb|EGJ30757.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 241

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L  I  G T+DEIA  L +   TV  +I S++ K     R+ A   A+R+ +
Sbjct: 180 LTERELTVLELIVAGYTNDEIAERLLLGLGTVKTHIRSVLWKLCCDDRTQAAVQALRSGL 239

Query: 246 V 246
           V
Sbjct: 240 V 240


>gi|329935673|ref|ZP_08285479.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329304851|gb|EGG48723.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 220

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +G L      + +    H G     L  REV+ L  +++G  + EIA  L  S  T+ N 
Sbjct: 135 LGRLIEQVGTLHRGAAGHSGAPAVGLLPREVDVLRLVADGLDTSEIAGKLSYSERTIKNV 194

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +  +  +   + R+ A+AYA+R   +
Sbjct: 195 MHGLTTRLHLRNRAHAVAYALREGYI 220


>gi|297617439|ref|YP_003702598.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145276|gb|ADI02033.1| transcriptional regulator, LuxR family [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 218

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 13/131 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLM-----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           G  NR+  L      +R G+M      L P+  +   + +   GLL   + ++  S    
Sbjct: 84  GNPNRFNLLEL----VRTGVMGCLPLRLLPQQIVSAVELVVGAGLLCLPRPDLKTSLGTE 139

Query: 180 WGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            G+       L+ RE E L  ++   ++ EIA  L +S +TV  ++ +I RK   + R+ 
Sbjct: 140 TGESKGTFSILSRREEEVLAMLANKLSTQEIAASLYLSESTVKTHLRNIFRKLGVRNRTE 199

Query: 236 AIAYAVRNNIV 246
           A+A A +  +V
Sbjct: 200 AVAAAYQLGLV 210


>gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 231

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ +
Sbjct: 168 IDLTPREQSVLNLVAQGLMNKEIARKLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227

Query: 244 NI 245
            +
Sbjct: 228 GL 229


>gi|302879267|ref|YP_003847831.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302582056|gb|ADL56067.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 211

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I  GKT  E+A +L +S  TV+ Y + I+ K   +  +    Y ++N +
Sbjct: 149 LSDREYQVLRLIGSGKTVSEVAKLLSLSVKTVSTYRSHILDKMNLRNNAELTLYVIQNGL 208

Query: 246 V 246
           +
Sbjct: 209 M 209


>gi|227111773|ref|ZP_03825429.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 210

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  ++ G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 150 LTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAA 200


>gi|91790427|ref|YP_551379.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91699652|gb|ABE46481.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 236

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  IS G ++  IA  L I+  TV  ++  I+RK    +R  A  YA  +++
Sbjct: 176 LSAREREVLARISHGDSNKVIARKLDIAETTVKIHVQHILRKLQLSSRVQAAVYAAAHDL 235


>gi|16125402|ref|NP_419966.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221234145|ref|YP_002516581.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13422468|gb|AAK23134.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220963317|gb|ACL94673.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 201

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIA 238
           LT RE E L    EG+++ +IA +L +S  TV NY++   +K   A +  +G IA
Sbjct: 141 LTDREREILRLAEEGRSNKDIADVLDLSPGTVRNYLSEAAQKLGAANRVEAGRIA 195


>gi|312959788|ref|ZP_07774304.1| two-component system, NarL family [Pseudomonas fluorescens WH6]
 gi|311285954|gb|EFQ64519.1| two-component system, NarL family [Pseudomonas fluorescens WH6]
          Length = 205

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 181 GKDFEL----TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           G++ EL      RE+  L   ++G+T+ EIA  + +S  TV+ Y   +M+K   K+    
Sbjct: 136 GRELELFKAVNDRELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLQAKSLVEL 195

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 196 IEMAKRNALV 205


>gi|297197302|ref|ZP_06914699.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|297146673|gb|EFH28280.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 228

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A +     S DVH  +D   LT RE+E L  ++ G ++ E+A  L +S  TV  +I  I+
Sbjct: 140 AQREEAVPSADVH--RDLSGLTPRELEVLRLLATGLSNAELAERLFLSPTTVKTHIGRIL 197

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   + R  A+  A  + ++
Sbjct: 198 SKLELRDRVQAVVLAYESGLI 218


>gi|257792653|ref|YP_003183259.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257476550|gb|ACV56870.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 517

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           QA+M K      GK F L+ RE+E +   + G T   +A  L I++ TV+ +I  I  KT
Sbjct: 442 QASM-KHNAEEMGKQFLLSDREIEVMALYALGYTQKRVAEELFITQGTVHAHIKRIYAKT 500

Query: 229 ATKTRSGAIAY 239
              +R   + Y
Sbjct: 501 GLHSRQEILDY 511


>gi|302539397|ref|ZP_07291739.1| two component transcriptional regulator [Streptomyces sp. C]
 gi|302448292|gb|EFL20108.1| two component transcriptional regulator [Streptomyces sp. C]
          Length = 220

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +T RE + L  ++ G T+ EIA  L IS +TV  ++AS+M K   + R
Sbjct: 156 VTAREEQVLLAVARGLTNTEIADALRISLSTVKTHLASLMAKLGARNR 203


>gi|167839791|ref|ZP_02466475.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 215

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    I+ G+T  EIA  L +S  T++ Y A I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVFRRIAAGETITEIAQALDVSAKTISTYKARILEKMQMPHDAALVRYAIRHKL 208


>gi|167038926|ref|YP_001661911.1| ribokinase-like domain-containing protein [Thermoanaerobacter sp.
           X514]
 gi|166853166|gb|ABY91575.1| PfkB domain protein [Thermoanaerobacter sp. X514]
          Length = 380

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 183 DFELTGREVECLTWISEGK--TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L +I +    + +E+A ++GISR+ V  +IA++M+K     R     Y 
Sbjct: 13  DVALTQREKEILRFIKKNPMISQEELAQLMGISRSAVAGHIANLMKKGFILGR----GYV 68

Query: 241 VRN 243
           VR+
Sbjct: 69  VRD 71


>gi|146293428|ref|YP_001183852.1| response regulator receiver protein [Shewanella putrefaciens CN-32]
 gi|145565118|gb|ABP76053.1| transcriptional regulator, LuxR family [Shewanella putrefaciens
           CN-32]
 gi|319426731|gb|ADV54805.1| transcriptional regulator, LuxR family [Shewanella putrefaciens
           200]
          Length = 211

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 148 LTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|311894237|dbj|BAJ26645.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 206

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L   ++G    EIA  L +S  TV NY+A+   K   +TR  A+  A
Sbjct: 141 LTAREAQALALAADGCEPREIARRLHLSAGTVRNYLAAAQLKLDARTRLDAVRIA 195


>gi|254884986|ref|ZP_05257696.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|319640388|ref|ZP_07995112.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|254837779|gb|EET18088.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|317387991|gb|EFV68846.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 256

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           F LTGRE+E L  I  G  S EIA  L IS +TV+ +  +++RK   +    AI
Sbjct: 193 FGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVQNSLEAI 246


>gi|222106434|ref|YP_002547225.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737613|gb|ACM38509.1| two component response regulator [Agrobacterium vitis S4]
          Length = 779

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E++ LT ++EG ++  IA   GIS  TV  ++ ++ RK     R  AIA A
Sbjct: 718 LTQQELKILTMLAEGASNKLIARNSGISEPTVKFHLKNVYRKLGCSRRHEAIAAA 772


>gi|153011389|ref|YP_001372603.1| Glycerone kinase [Ochrobactrum anthropi ATCC 49188]
 gi|151563277|gb|ABS16774.1| Glycerone kinase [Ochrobactrum anthropi ATCC 49188]
          Length = 694

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           C  +  +G+T  EIA I+GISR TVN+Y+A
Sbjct: 34  CWLYYEDGRTQGEIAEIMGISRATVNSYLA 63


>gi|330984843|gb|EGH82946.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 208

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y   ++ K    +    I  A RN +
Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|289770570|ref|ZP_06529948.1| two-component system response transcriptional regulator
           [Streptomyces lividans TK24]
 gi|289700769|gb|EFD68198.1| two-component system response transcriptional regulator
           [Streptomyces lividans TK24]
          Length = 218

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A A+  R
Sbjct: 156 LTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKLGMQRRSQAAAFVAR 212


>gi|228919418|ref|ZP_04082785.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840249|gb|EEM85523.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 217

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDE 205
           +G I+L  ++    + A   AN  ++    + ++ +    LT RE+E    I EGK++  
Sbjct: 119 EGNILLNPKITLKVVKALNSANYKETVKAEFNENKQPSNLLTPRELEVAKHIMEGKSNKA 178

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           I+  L I+  TV NY++ I+ K     R+    Y
Sbjct: 179 ISKELFITEGTVKNYVSRILEKLELNNRTELTLY 212


>gi|239817077|ref|YP_002945987.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803654|gb|ACS20721.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 210

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    +++G+T+ +IA  L +S  TV+ Y   +M K    + S    YA++N 
Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKTLSLSVKTVSTYRTRLMEKMNLSSNSDLTYYALKNK 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|163853743|ref|YP_001641786.1| regulatory protein LuxR [Methylobacterium extorquens PA1]
 gi|218532601|ref|YP_002423417.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|240141169|ref|YP_002965649.1| putative two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|254563682|ref|YP_003070777.1| two-component LuxR family transcriptional regulator
           [Methylobacterium extorquens DM4]
 gi|163665348|gb|ABY32715.1| regulatory protein LuxR [Methylobacterium extorquens PA1]
 gi|218524904|gb|ACK85489.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
 gi|240011146|gb|ACS42372.1| putative two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|254270960|emb|CAX26965.1| putative two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens DM4]
          Length = 253

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REV  L  ++ G+++  IA  L I+  TV  ++ +I+RK   K R+ A  +A+   I
Sbjct: 159 LSSREVNILEGLALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKGI 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|148557095|ref|YP_001264677.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148502285|gb|ABQ70539.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 855

 Score = 36.6 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE E L  +++G ++  IA  L ++ NTV  ++ +I  K    +R  A A A R+
Sbjct: 796 QLTDREAEILAHLADGVSNKLIARRLALTENTVKFHLKNIFAKLGVASRKEAAACAFRD 854


>gi|221065359|ref|ZP_03541464.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|299531846|ref|ZP_07045247.1| two component LuxR family transcriptional regulator [Comamonas
           testosteroni S44]
 gi|220710382|gb|EED65750.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|298720166|gb|EFI61122.1| two component LuxR family transcriptional regulator [Comamonas
           testosteroni S44]
          Length = 210

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    ++ G+T+ +IA  L +S  TV+ Y   +M K    + S    YA++N 
Sbjct: 148 QLSEREFQVFLKLARGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNR 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|297190315|ref|ZP_06907713.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150449|gb|EDY66317.2| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 283

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +  G T+DEIA  L +S  T   +++ IM K   + R+  +  A  + +
Sbjct: 217 LTAREHEVLGLVGAGLTNDEIARRLVLSPATAKTHVSRIMSKLGARDRTQLVITAYESGM 276

Query: 246 V 246
           +
Sbjct: 277 I 277


>gi|284043982|ref|YP_003394322.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948203|gb|ADB50947.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  ++ G  +  IA  L IS +TV N+I+SI+ K     R  A   AVR+ 
Sbjct: 154 QLSPREQEVLRLVAGGMDNAAIAQELFISPHTVKNHISSILTKLHVANRIQAAVRAVRDE 213

Query: 245 IV 246
           I+
Sbjct: 214 IL 215


>gi|254283973|ref|ZP_04958941.1| transcriptional regulator, LuxR family [gamma proteobacterium
           NOR51-B]
 gi|219680176|gb|EED36525.1| transcriptional regulator, LuxR family [gamma proteobacterium
           NOR51-B]
          Length = 206

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E    + +G  + EIA +LG+S  TV  ++ +I  K   + R
Sbjct: 146 LTHREYEVAALVGKGANNKEIAELLGVSERTVKAHLTAIFEKLELRDR 193


>gi|149276764|ref|ZP_01882907.1| hypothetical protein PBAL39_15329 [Pedobacter sp. BAL39]
 gi|149232433|gb|EDM37809.1| hypothetical protein PBAL39_15329 [Pedobacter sp. BAL39]
          Length = 461

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSW-TMRMYALTEY------VGASHFLLVRWDLF 69
           E + SF  H P+    +A+   L+  V+W +  +   T Y      + +  FLL+ WD +
Sbjct: 25  ENKRSFELHNPSTKIYVAKNPFLENDVAWLSSDLSIFTWYRLNRSSISSKRFLLIEWDCW 84

Query: 70  QEQKLDSIVSSDWPFDLV-RCMALSEKDKYY 99
            +  L+S  S  W  D+V  C+   E+D +Y
Sbjct: 85  CDVSLESYFSFAWDQDIVGPCVKYPERDDWY 115


>gi|159036019|ref|YP_001535272.1| LuxR family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914854|gb|ABV96281.1| transcriptional regulator, LuxR family [Salinispora arenicola
           CNS-205]
          Length = 195

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+   L  +++G  +  IA  L  S +TV N I  +M +     R+ A+A A+R  +
Sbjct: 135 LTPRQTAVLNLMADGHPNVAIATALSCSEHTVKNVIYDMMMRLQVNNRAHAVARAIRAGL 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|1934734|emb|CAA73019.1| FlcA [Azospirillum brasilense]
          Length = 215

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + LT R+ E L  +  GK++ +IA  LG+S  TV  ++ +I +    K R+
Sbjct: 154 YGLTQRQREVLDCLRAGKSNKQIAYELGLSEGTVKIHVTAIFKSLGVKNRT 204


>gi|109898298|ref|YP_661553.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109700579|gb|ABG40499.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 213

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 34/56 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           GK  +LT  +++ L  +++G  + +IA  LG+S +T+  ++++++ K     R+ A
Sbjct: 147 GKLAQLTPHQLKVLQLMADGLLNKQIAYELGVSESTIKQHVSAVLHKLGFNNRTQA 202


>gi|328885370|emb|CCA58609.1| Response regulator containing a CheY receiver domain and an HTH
           DNA-binding domain [Streptomyces venezuelae ATCC 10712]
          Length = 237

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G ++ EIA  L +S +TV  ++ +++ K   + R  A+  A    +
Sbjct: 155 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|300791071|ref|YP_003771362.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800585|gb|ADJ50960.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 217

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ +   + G T+ EI   L +S +TV  ++AS+  K   + R    A+A R+ +
Sbjct: 156 LTARELDVVKAAARGLTNTEIGAELFMSLSTVKTHLASVQSKIGARNRVETAAWAWRSGV 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|220917273|ref|YP_002492577.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955127|gb|ACL65511.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 210

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E    ++  ++  EIA  L +S  TV+ Y + I+ K A ++ +  + YAVR+ +
Sbjct: 149 LSPRELEIFLQLAAARSVSEIAERLQLSVKTVSTYRSRILEKMALRSNAELMQYAVRHGL 208

Query: 246 V 246
            
Sbjct: 209 A 209


>gi|28871293|ref|NP_793912.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|66047117|ref|YP_236958.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|213970871|ref|ZP_03398994.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
 gi|257486630|ref|ZP_05640671.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289650462|ref|ZP_06481805.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|289676759|ref|ZP_06497649.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
 gi|298488740|ref|ZP_07006769.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|302059914|ref|ZP_07251455.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           K40]
 gi|302130513|ref|ZP_07256503.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|302184715|ref|ZP_07261388.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|28854543|gb|AAO57607.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|63257824|gb|AAY38920.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
 gi|213924394|gb|EEB57966.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
 gi|298156813|gb|EFH97904.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330877330|gb|EGH11479.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330889570|gb|EGH22231.1| LuxR response regulator receiver [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330898580|gb|EGH29999.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330937554|gb|EGH41495.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330949995|gb|EGH50255.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
 gi|330966557|gb|EGH66817.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|330973098|gb|EGH73164.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330981561|gb|EGH79664.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
 gi|331015675|gb|EGH95731.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 208

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y   ++ K    +    I  A RN +
Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|38232721|ref|NP_938488.1| putative two-component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38198979|emb|CAE48596.1| Putative two-component system response regulator [Corynebacterium
           diphtheriae]
          Length = 219

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +T RE++ L  +++G T+ EI+  LGI+  TV  +I +++ K   + R   + +
Sbjct: 156 ITRREMDVLLCVAQGLTNAEISADLGIAETTVKTHITALLAKVHARDRVALVLF 209


>gi|332528810|ref|ZP_08404787.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332041876|gb|EGI78225.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 181

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           R+ E L  + +G T+ EI  +L +S  TV N++++I+R     TR+ A+  A ++ 
Sbjct: 110 RQEEVLRLLLDGLTNKEIGRLLDLSDETVKNHVSNILRCFGVATRTQAVLAARKHG 165


>gi|330809270|ref|YP_004353732.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377378|gb|AEA68728.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 221

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT R+ E    I+EGKT+ EIA  L IS  TV  +++S++R      R+ A A
Sbjct: 156 KLTSRQREVWQLIAEGKTNKEIAAALEISPFTVRIHVSSLIRALNVPNRAVAAA 209


>gi|302532515|ref|ZP_07284857.1| two-component system regulator [Streptomyces sp. C]
 gi|302441410|gb|EFL13226.1| two-component system regulator [Streptomyces sp. C]
          Length = 259

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G  +DEIA  L ++  TV  ++   M K   ++R+ A+A A    +
Sbjct: 189 LTNREQDVLRLVARGLGNDEIAAELVVTEATVKTHLHRTMTKLGLRSRAQAVAVAYEAGL 248

Query: 246 V 246
           V
Sbjct: 249 V 249


>gi|221210086|ref|ZP_03583067.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD1]
 gi|221170774|gb|EEE03240.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD1]
          Length = 215

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVFRRIAAGQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHKL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|54022382|ref|YP_116624.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54013890|dbj|BAD55260.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 220

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E +  ++EG T+ EI   L +S  T   +++ I+ K   + R+  +  A  + 
Sbjct: 154 ELTDREREVMALVAEGLTNAEIGARLYLSPATARTHVSRILTKLGARDRTQLVVLAYESG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|33601716|ref|NP_889276.1| response regulatory protein [Bordetella bronchiseptica RB50]
 gi|33576153|emb|CAE33232.1| response regulatory protein [Bordetella bronchiseptica RB50]
          Length = 224

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE + L  I+ G T DEIA  L +SR+TV  ++  I RK    ++  AI  A
Sbjct: 163 LSPREHQVLERITLGYTYDEIARDLEVSRHTVQTFVRRIYRKLQVHSKVDAINAA 217


>gi|89092784|ref|ZP_01165736.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
 gi|89082809|gb|EAR62029.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
          Length = 223

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++  + ++EG+T   +A  + +S  TV+ +  +I RK      S  +  A+R+NI
Sbjct: 161 LTKRELQIFSLLAEGRTVSIVAEEMFLSPKTVHAHRTNIFRKLKISNNSELVHLAIRHNI 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|331699969|ref|YP_004336208.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954658|gb|AEA28355.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 542

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G+++ EIA  L I+  TV  +++++  K    +R+ A A+A  + +
Sbjct: 482 LSPRELEVLRLVAAGRSNAEIAAELVIAEKTVARHLSNMFVKLDVGSRTAAAAFAFEHRL 541

Query: 246 V 246
           +
Sbjct: 542 L 542


>gi|261821966|ref|YP_003260072.1| transcriptional regulator NarP [Pectobacterium wasabiae WPP163]
 gi|261605979|gb|ACX88465.1| two component transcriptional regulator, LuxR family
           [Pectobacterium wasabiae WPP163]
          Length = 210

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  ++ G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 150 LTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAA 200


>gi|271965453|ref|YP_003339649.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508628|gb|ACZ86906.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 233

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V R   G  LL P    +LR R+ E  L A  QA    +  V  G    LT RE+E L  
Sbjct: 115 VRRAAAGEPLLAPS---VLR-RVVERALAAEEQA----AVQVPAG----LTDRELEVLAL 162

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  G ++ EIA  L +   TV  ++++ M K   + R+ A   A R  +V
Sbjct: 163 VGVGLSNAEIADALHVGVTTVKTHVSTAMDKLGLRNRTQAAVVAHRIGLV 212


>gi|256833092|ref|YP_003161819.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256686623|gb|ACV09516.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 233

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +  I++GK++ EIA  L ++  TV  ++  I++K   + R   +  A  N +
Sbjct: 169 LTDRERDVMLLIAKGKSNTEIARELFVAEATVKTHVGRILQKFGARDRVQIVVAAYENGL 228

Query: 246 V 246
           V
Sbjct: 229 V 229


>gi|71736868|ref|YP_273631.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71557421|gb|AAZ36632.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 208

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y   ++ K    +    I  A RN +
Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|39935368|ref|NP_947644.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192290925|ref|YP_001991530.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|39649220|emb|CAE27740.1| possible two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
 gi|192284674|gb|ACF01055.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 248

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  ++E L +++ GK++ +IA    +S  T+ + +A I++K     R+ A   A+RN+
Sbjct: 180 ELTPSQLELLPYLASGKSNRQIAKERDMSEFTIKSQVAGIIQKLNVANRTQAALLAMRNS 239


>gi|85710435|ref|ZP_01041499.1| response regulator FixJ [Erythrobacter sp. NAP1]
 gi|85687613|gb|EAQ27618.1| response regulator FixJ [Erythrobacter sp. NAP1]
          Length = 208

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E  +  A +  M ++ D    +   L+ RE E L W++EG ++  IA  L IS  TV  +
Sbjct: 120 EAEIFGAARRRMIEARD----RISSLSTREREVLEWLAEGSSNKVIARELDISPRTVEIH 175

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
            A++M K   +  + A+   +  N+
Sbjct: 176 RANMMHKLGARHAAEAVRLKIEANL 200


>gi|332669983|ref|YP_004452991.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332339021|gb|AEE45604.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 215

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE E L  ++ G+ +  I+  L +S  TV N++A+++ K +   RS AI  A
Sbjct: 152 QLTDREREVLDLVAAGRDNAVISRRLSLSPKTVRNHVANVLTKLSLPDRSAAILRA 207


>gi|330977656|gb|EGH77559.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 208

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208


>gi|325298413|ref|YP_004258330.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
 gi|324317966|gb|ADY35857.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
          Length = 190

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  +++G  + EIA  L IS  TV ++  +I  K   K+ S    YAV + 
Sbjct: 124 DLSPREIEVLVLLTKGCINKEIAERLNISLTTVISHRKNITEKLGIKSVSALAIYAVMHG 183

Query: 245 IV 246
            V
Sbjct: 184 YV 185


>gi|301632710|ref|XP_002945424.1| PREDICTED: response regulator gacA-like, partial [Xenopus
           (Silurana) tropicalis]
          Length = 212

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K      +    YA+RN +
Sbjct: 152 LSERELQTLVKIASGKRLSDIADELMLSPKTVSVYRARVLEKLQLTNNAELTVYAIRNQL 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|29830688|ref|NP_825322.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607800|dbj|BAC71857.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 200

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L + ++G    EIA    ++  TV NY++S + K   + R 
Sbjct: 129 AADAISAGDSPLTVREAEVLEFAADGAPVAEIAERAALAEGTVRNYLSSAVSKLGAENRH 188

Query: 235 GAIAYA 240
            A+  A
Sbjct: 189 TAVRLA 194


>gi|24306039|gb|AAN52499.1| SpnR [Serratia marcescens]
          Length = 247

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            T RE E L W S GKT  +IA I GIS + V  ++ +I+ K        AI   V
Sbjct: 181 FTPRENEVLYWSSMGKTYGDIAAIAGISISMVKFHMGNIVSKLGVSNARQAIRLGV 236


>gi|330965398|gb|EGH65658.1| regulatory protein, LuxR [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 105

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I  K    +   A+  A+R  
Sbjct: 41  QLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRHKFGVTSLKAALVMAIRQG 100


>gi|319795407|ref|YP_004157047.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597870|gb|ADU38936.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 210

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    +++G+T+ +IA  L +S  TV+ Y   +M K    + S    YA++N 
Sbjct: 148 QLSEREFQVFLKLAKGETAGDIAKTLSLSVKTVSTYRTRLMEKMNLSSNSDLTYYALKNK 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|256751073|ref|ZP_05491955.1| PfkB domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749979|gb|EEU63001.1| PfkB domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 380

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 183 DFELTGREVECLTWISEGK--TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE E L +I +    + +E+A ++GISR+ V  +IA++M+K     R     Y 
Sbjct: 13  DVALTQREKEILRFIKKNPMISQEELAQLMGISRSAVAGHIANLMKKGFILGR----GYV 68

Query: 241 VRN 243
           VR+
Sbjct: 69  VRD 71


>gi|302523631|ref|ZP_07275973.1| response regulator receiver [Streptomyces sp. AA4]
 gi|302432526|gb|EFL04342.1| response regulator receiver [Streptomyces sp. AA4]
          Length = 224

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EIA  L +S  TV  Y++ I+ K   + R  A+  A R  +
Sbjct: 160 LTPREREVLVQLARGLSNAEIAEELVLSIETVKTYVSRILAKLDLRDRVQAVVLAYRTGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|239831167|ref|ZP_04679496.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239823434|gb|EEQ95002.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 231

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 33/52 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+
Sbjct: 166 LTPQQTRVLTMLAEGLLNKQIAYELGVSEATVKAHVSAVLQKLGVDSRTQAV 217


>gi|227329494|ref|ZP_03833518.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 210

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  ++ G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 150 LTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAA 200


>gi|300775501|ref|ZP_07085362.1| possible transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
 gi|300505528|gb|EFK36665.1| possible transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
          Length = 223

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EL+  E++ + +  EG ++ EIA  L +S  T++ YI  +  K   KT+   I + V N
Sbjct: 158 ELSPSEIQLMRFCYEGFSNKEIAEKLNLSTRTIDTYINRLTEKLGLKTKLHLIRFCVEN 216


>gi|297199099|ref|ZP_06916496.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297147291|gb|EDY59218.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 224

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+   
Sbjct: 161 ELTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 220

Query: 245 I 245
           +
Sbjct: 221 L 221


>gi|167646079|ref|YP_001683742.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167348509|gb|ABZ71244.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 249

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S  VH   D  L  RE++ L   ++G T  E A  L +SR  V  +++    K  T  ++
Sbjct: 176 SLPVHGTSDAGLNAREMQVLRLAAQGLTEMETAARLKLSRRGVQFHLSRAGAKLDTTNKT 235

Query: 235 GAIAYAVRNNIV 246
            A+A A+   ++
Sbjct: 236 AAVARAISLGLI 247


>gi|33597314|ref|NP_884957.1| response regulatory protein [Bordetella parapertussis 12822]
 gi|33573741|emb|CAE38039.1| response regulatory protein [Bordetella parapertussis]
          Length = 224

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE + L  I+ G T DEIA  L +SR+TV  ++  I RK    ++  AI  A
Sbjct: 163 LSPREHQVLERITLGYTYDEIARDLEVSRHTVQTFVRRIYRKLQVHSKVDAINAA 217


>gi|302337759|ref|YP_003802965.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634944|gb|ADK80371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 886

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K+ D    K   L+ RE+  L  ++ G T+ EIA  L IS  TV  +  +I +K   K R
Sbjct: 813 KASDAGSCKPVTLSNRELMVLRLLARGYTNKEIAEELFISVRTVKWHTVNIYKKLGVKNR 872

Query: 234 SGAIAYAVRNNIV 246
           + A+  A  + I+
Sbjct: 873 TEAVVKANISGII 885


>gi|300789933|ref|YP_003770224.1| SARP family transcriptional regulator fused with ATPase domain
            [Amycolatopsis mediterranei U32]
 gi|299799447|gb|ADJ49822.1| SARP family transcriptional regulator fused with ATPase domain
            [Amycolatopsis mediterranei U32]
          Length = 1199

 Score = 36.6 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LT  EV     ++EG+++ +IA  L + R TV  ++A ++ K  T +RSG +A A R
Sbjct: 1141 LTPIEVRIAGLVAEGRSNPDIAAELSLPRRTVQAHVARLLGKLETPSRSG-VADAFR 1196


>gi|298242112|ref|ZP_06965919.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555166|gb|EFH89030.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 273

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EL+ RE + L  +++G  + EIA  L +S  TV NY+++I+ K     R+ AI  A
Sbjct: 211 ELSHRERDILALLAQGCKNAEIAERLVVSPKTVRNYVSNIISKLQVADRAQAILRA 266


>gi|298241311|ref|ZP_06965118.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554365|gb|EFH88229.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 214

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE E L  I++G+++  IA    +S  TV N++++I  K     R+ AI  A
Sbjct: 153 DLTEREREILLLIAQGESNAAIAKHFTLSLKTVQNHVSNIFSKLQVADRAQAIVRA 208


>gi|257057781|ref|YP_003135613.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587653|gb|ACU98786.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 226

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + +G ++ EIA  L IS  T   ++++++ K    +R+ A   A+R  +
Sbjct: 162 LTARERDILVLVGQGLSNREIADRLVISERTARTHVSNVLSKLQLSSRTQAALLAIREGL 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|226305431|ref|YP_002765389.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184546|dbj|BAH32650.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 219

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 159 LTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHRRQI 218


>gi|110681357|ref|YP_684364.1| nitrate/nitrite response regulator protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109457473|gb|ABG33678.1| nitrate/nitrite response regulator protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 210

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 35/54 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ +E E L  ++EG T+ +++  L IS NTV  ++++I  K + + R+ AIA+
Sbjct: 147 LSRKEREILDALAEGLTNKQLSARLEISTNTVKFHLSNIFDKLSVRNRTQAIAH 200


>gi|78063367|ref|YP_373275.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77971252|gb|ABB12631.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 214

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ +  I  G+T  +IA  L +S  TV+ Y   I+ K      +  + YAVR+++
Sbjct: 149 LSARELDVMRRIVAGQTVTQIATELALSAKTVSTYKTRILEKMELPHEAALVRYAVRHDL 208


>gi|319939711|ref|ZP_08014069.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811129|gb|EFW07438.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 199

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ +E+  L   + G +S EIA  L +S  T+ NY++SI+ K   + R  A+  A  N
Sbjct: 139 LSNQEILVLQAAARGLSSKEIAQKLYLSNGTIRNYMSSILTKLTAENRLEAVRIAQEN 196


>gi|238024126|ref|YP_002908358.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878791|gb|ACR31123.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae
           BGR1]
          Length = 520

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 123 PAGMDNRYCSL--TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           P  +    C L    D+   +   M L      +++D  W    L    AN+ ++     
Sbjct: 375 PVTIHGTECVLMAILDITDRKRSEMELVSAIETVMQDASWFSRTLIEKLANVRRANAPDA 434

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    +LT RE +    + +G +  +IA  L +S  TV N++A+I  K    +R+ AI +
Sbjct: 435 GAHLSDLTARECDVFEQLCKGLSDKDIAKALELSPATVRNHVATIYAKLDVHSRAEAIVW 494

Query: 240 A 240
           A
Sbjct: 495 A 495


>gi|237798778|ref|ZP_04587239.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021631|gb|EGI01688.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 208

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y   ++ K    +    I  A RN +
Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|89894771|ref|YP_518258.1| hypothetical protein DSY2025 [Desulfitobacterium hafniense Y51]
 gi|89334219|dbj|BAE83814.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           D H  K   LT RE+E    +  G  S EIA  L I++ TV+ +I +I+ K   K+R
Sbjct: 162 DPHDDKVASLTLRELEVFNLVVTGLRSKEIAEKLEITKRTVDFHIGNILLKLEAKSR 218


>gi|119025388|ref|YP_909233.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764972|dbj|BAF39151.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 226

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 164 LLAAYQ----ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           +L+A+Q    AN      +H  +   L+ RE E +  I+ G T  E+A  L IS  TV  
Sbjct: 140 VLSAFQNGPSANGAFGGPIHDDELDRLSNREQEVMRLIARGYTYKEVASELFISIKTVET 199

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++S++RK     RS    +A    IV
Sbjct: 200 HMSSVLRKLQLSNRSELTRWAADRRIV 226


>gi|304321086|ref|YP_003854729.1| putative two-component response regulator protein [Parvularcula
           bermudensis HTCC2503]
 gi|303299988|gb|ADM09587.1| putative two-component response regulator protein [Parvularcula
           bermudensis HTCC2503]
          Length = 217

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  ISEGKT+  IA  L IS  TV  ++   + K     R+ A    VR
Sbjct: 155 LTDREREVLRLISEGKTNKAIARELVISPATVKAHVERCLAKLGAADRTQAAVMMVR 211


>gi|330957744|gb|EGH58004.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 208

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y   ++ K    +    I  A RN +
Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|318042198|ref|ZP_07974154.1| DNA-binding response regulator [Synechococcus sp. CB0101]
          Length = 236

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+   T+ EIA  L +S  TV +++A ++ K   ++R  A    +R  +
Sbjct: 170 LTERELEVLQRIAANATNPEIAADLFLSIETVKSHVAQVLHKLDARSRLQAAIKGIRLGL 229

Query: 246 V 246
           V
Sbjct: 230 V 230


>gi|319764111|ref|YP_004128048.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330823614|ref|YP_004386917.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317118672|gb|ADV01161.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329308986|gb|AEB83401.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 210

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    ++ G+T+ +IA  L +S  TV+ Y   +M K    + S    YA++N 
Sbjct: 148 QLSEREFQVFLKLARGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNR 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|312196093|ref|YP_004016154.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227429|gb|ADP80284.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 220

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  + ++  TV  +++ ++ K   + R  A+ YA  + +
Sbjct: 155 LTEREREVLVLIARGLSNTEIAARIYVTEGTVKTHVSRLLAKLNLRDRVQAVVYAYESGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|302543707|ref|ZP_07296049.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461325|gb|EFL24418.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 206

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G +  EIA    +S  TV NY+++   K   + R 
Sbjct: 135 AADAISAGDSPLTARETELLDLAADGASVAEIARRAALSPGTVRNYLSAAAAKLHAENRH 194

Query: 235 GAI 237
            A+
Sbjct: 195 AAV 197


>gi|160897254|ref|YP_001562836.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160362838|gb|ABX34451.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 210

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE +    ++ G+T+ +IA  L +S  TV+ Y   +M K    + S    YA++N 
Sbjct: 148 QLSEREFQVFLKLARGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNR 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|58584166|ref|YP_203182.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428760|gb|AAW77797.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 301

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 228 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 283


>gi|330826961|ref|YP_004390264.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|329312333|gb|AEB86748.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 212

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 33/52 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K A  +R+ A
Sbjct: 148 QLTPQQFRVLLCLADGLLNKQIAAQLGLAENTVKVHVTAILKKLACYSRTQA 199


>gi|296454490|ref|YP_003661633.1| LuxR family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183921|gb|ADH00803.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 230

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +     L+G+E + L   ++G T+ EIA  LGIS  TV  +    + K   ++R+ A
Sbjct: 161 DTSYAHRGALSGKERDTLRMYADGSTTKEIAERLGISVATVATFERRALAKLGARSRAHA 220

Query: 237 IAYAVRNN 244
           I+  V+ +
Sbjct: 221 ISICVKRH 228


>gi|229489617|ref|ZP_04383480.1| response regulator [Rhodococcus erythropolis SK121]
 gi|229323714|gb|EEN89472.1| response regulator [Rhodococcus erythropolis SK121]
          Length = 219

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 159 LTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHRRQI 218


>gi|85858979|ref|YP_461181.1| two-component response regulator [Syntrophus aciditrophicus SB]
 gi|85722070|gb|ABC77013.1| two-component response regulator [Syntrophus aciditrophicus SB]
          Length = 217

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ++EG ++ +IA  L +S  TV  +  +I +K    + +  I YA+R  
Sbjct: 152 ELTPRERELLQLLAEGLSAKQIAANLHVSVKTVETHRRNITQKLGVGSVAELIKYAIREG 211

Query: 245 I 245
           +
Sbjct: 212 L 212


>gi|302524673|ref|ZP_07277015.1| two component transcriptional regulator [Streptomyces sp. AA4]
 gi|302433568|gb|EFL05384.1| two component transcriptional regulator [Streptomyces sp. AA4]
          Length = 202

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L     G +  EIA  L +S  TV NY++  + KT  + R GA+  A
Sbjct: 142 LTARERDVLIAARGGGSVAEIAGSLYLSVGTVRNYLSGAIAKTGARNRMGAVRVA 196


>gi|255015802|ref|ZP_05287928.1| transcriptional regulator [Bacteroides sp. 2_1_7]
          Length = 203

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N +
Sbjct: 136 LSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVNKL 195

Query: 246 V 246
           V
Sbjct: 196 V 196


>gi|291301049|ref|YP_003512327.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570269|gb|ADD43234.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 914

 Score = 36.6 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ RE E L  + E  T+ +IA  L IS  TV N+++S++RK     R    A A
Sbjct: 9   ISKREAEVLAVLGEHLTNAQIAHRLHISVRTVENHVSSLLRKLGAANRQALAAIA 63


>gi|154486926|ref|ZP_02028333.1| hypothetical protein BIFADO_00759 [Bifidobacterium adolescentis
           L2-32]
 gi|154084789|gb|EDN83834.1| hypothetical protein BIFADO_00759 [Bifidobacterium adolescentis
           L2-32]
          Length = 250

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             L+ +E + LT  S G ++ +IA +L +S +T+N YI    RK    ++  A+A
Sbjct: 188 LSLSQQEKQVLTMCSHGYSNADIAQVLDVSPSTINTYITRASRKMGVASKREAVA 242


>gi|150376931|ref|YP_001313527.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150031478|gb|ABR63594.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 259

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 18/109 (16%)

Query: 131 CSLTFDVARIRIGLML----LFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDFE 185
            S++ DV    IGL L      P   I+   RL E G   A+  A MF            
Sbjct: 140 SSVSIDVCIEAIGLALAGGIFVPASSILAMGRLLETGNAVAHPLAGMF------------ 187

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            T R+ E +  +  GK +  IA  L +  +TV  +I +IM+K     R+
Sbjct: 188 -TARQAEVVEALRRGKANKIIAYELNLRESTVKVHIRNIMKKVKATNRT 235


>gi|305664552|ref|YP_003860839.1| two component transcriptional regulator, LuxR family protein
           [Maribacter sp. HTCC2170]
 gi|88708569|gb|EAR00805.1| two component transcriptional regulator, LuxR family protein
           [Maribacter sp. HTCC2170]
          Length = 209

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +L+ REVE L  ++ GK + ++A+ L ++  TV+ Y A +M+K
Sbjct: 148 KLSTREVEVLKLLASGKRNKDVALGLNLNEKTVSTYKARLMKK 190


>gi|126174023|ref|YP_001050172.1| response regulator receiver protein [Shewanella baltica OS155]
 gi|153000313|ref|YP_001365994.1| response regulator receiver protein [Shewanella baltica OS185]
 gi|160874947|ref|YP_001554263.1| LuxR family transcriptional regulator [Shewanella baltica OS195]
 gi|217973656|ref|YP_002358407.1| LuxR family transcriptional regulator [Shewanella baltica OS223]
 gi|304411428|ref|ZP_07393042.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|307305250|ref|ZP_07584998.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
 gi|125997228|gb|ABN61303.1| transcriptional regulator, LuxR family [Shewanella baltica OS155]
 gi|151364931|gb|ABS07931.1| response regulator receiver protein [Shewanella baltica OS185]
 gi|160860469|gb|ABX49003.1| transcriptional regulator, LuxR family [Shewanella baltica OS195]
 gi|217498791|gb|ACK46984.1| transcriptional regulator, LuxR family [Shewanella baltica OS223]
 gi|304350283|gb|EFM14687.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|306911553|gb|EFN41978.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
 gi|315267183|gb|ADT94036.1| transcriptional regulator, LuxR family [Shewanella baltica OS678]
          Length = 211

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 148 LTIREREVLQALLTGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|330951813|gb|EGH52073.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 208

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 179 HWGKDFELTG-REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  + F+L   RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I
Sbjct: 140 HELELFKLVNDRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELI 199

Query: 238 AYAVRNNIV 246
             A RN +V
Sbjct: 200 EMAKRNALV 208


>gi|330808384|ref|YP_004352846.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376492|gb|AEA67842.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 208

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+T+ EIA  + +S  TV+ Y   +M+K   K+    I  A RN +V
Sbjct: 151 RELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLKVKSLVDLIEMAKRNALV 208


>gi|323491516|ref|ZP_08096696.1| putative fimbrial protein Z, transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323314241|gb|EGA67325.1| putative fimbrial protein Z, transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 209

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 164 LLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +L+ Y  N FKS   D+   K  +L+ REV  L ++ +GK++++++ ILG+S  TV+ Y 
Sbjct: 126 VLSGY--NFFKSSQRDIS-SKTPKLSNREVMVLNYLLQGKSNNDVSNILGLSPKTVSTYK 182

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             I+ K    +    I  + R  IV
Sbjct: 183 RRILDKYGVSSVIELIEVSKREAIV 207


>gi|149203772|ref|ZP_01880741.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. TM1035]
 gi|149142889|gb|EDM30931.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. TM1035]
          Length = 200

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ + 
Sbjct: 132 QLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIASTAGLTRYALEHG 191

Query: 245 IV 246
           ++
Sbjct: 192 VL 193


>gi|157962120|ref|YP_001502154.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157847120|gb|ABV87619.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 221

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ + L  I+EG ++ EIA+ + +S  TV  + A IM +      +G + +A+R+ +
Sbjct: 154 LTSRQRQILQLIAEGYSTREIALRMNVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRSKL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|317503562|ref|ZP_07961584.1| transcriptional regulator [Prevotella salivae DSM 15606]
 gi|315665304|gb|EFV04949.1| transcriptional regulator [Prevotella salivae DSM 15606]
          Length = 212

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 11/111 (9%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           ++  IR+GL       R I + R+ E+ LLA  Q  +         +  +LT  E E L 
Sbjct: 106 NLQEIRVGLDYAIHDRRFICQ-RMAEM-LLAPAQPQL---------EHVKLTPTETEILK 154

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G T+ EIA     S +TVN +  +I RK    T   A  YA+R  ++
Sbjct: 155 DIALGMTTREIAEKRFSSFHTVNTHRKNIFRKLGVNTIHEATKYALRAGLI 205


>gi|271967438|ref|YP_003341634.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510613|gb|ACZ88891.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    + D    +  +LT REVE LT + EG ++ +IA  L +S  T+ +Y++ ++ K 
Sbjct: 137 SAGHGAARDRALARIADLTDREVEVLTCLGEGLSNAKIARRLYLSEATIKSYVSRMLVKL 196

Query: 229 --ATKTRSGAIA 238
             + +T++G +A
Sbjct: 197 GFSNRTQAGLLA 208


>gi|300776148|ref|ZP_07086007.1| LuxR family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
 gi|300505281|gb|EFK36420.1| LuxR family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
          Length = 265

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            T REVE +  I++G ++ +I+ +L IS  TV  +  +I+RK+  K  S  I
Sbjct: 205 FTRREVEIINCIAKGYSTGKISDLLNISEETVRTHRKNILRKSDCKNSSELI 256


>gi|297585551|ref|YP_003701331.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297144008|gb|ADI00766.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 199

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E +  ++EG ++  IA  L ++  TV NYI++I+ K     R  AI
Sbjct: 138 LTEREKEVMKLMAEGMSTKLIAETLFLTNGTVRNYISTILDKLEVDNRIEAI 189


>gi|150009195|ref|YP_001303938.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|256841751|ref|ZP_05547257.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|298377017|ref|ZP_06986971.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_19]
 gi|149937619|gb|ABR44316.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|256736645|gb|EEU49973.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|298266001|gb|EFI07660.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_19]
          Length = 203

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N +
Sbjct: 136 LSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVNKL 195

Query: 246 V 246
           V
Sbjct: 196 V 196


>gi|161520802|ref|YP_001584229.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189353016|ref|YP_001948643.1| two-component system invasion response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221196454|ref|ZP_03569501.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2M]
 gi|221203125|ref|ZP_03576144.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|160344852|gb|ABX17937.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189337038|dbj|BAG46107.1| two-component system invasion response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221177059|gb|EEE09487.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221183008|gb|EEE15408.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2M]
          Length = 215

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVFRRIAAGQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHKL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|114798134|ref|YP_759953.1| DNA-binding response regulator FixJ [Hyphomonas neptunium ATCC
           15444]
 gi|114738308|gb|ABI76433.1| DNA-binding response regulator FixJ [Hyphomonas neptunium ATCC
           15444]
          Length = 205

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E L  + +G+T+ EIA+ L IS  TV  + A++M K      S
Sbjct: 143 LTAREKEVLHGLVDGQTNKEIAISLDISPRTVEIHRANVMEKMGASNLS 191


>gi|152984530|ref|YP_001346805.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150959688|gb|ABR81713.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 213

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ELT REVE L     G    EIA+ L  S+ T++   +S MRK    T +G   Y
Sbjct: 152 ELTPREVEVLRLYGSGLAIGEIALRLCRSKQTISAQKSSAMRKLGLDTNAGLYLY 206


>gi|330974001|gb|EGH74067.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 208

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208


>gi|299531248|ref|ZP_07044658.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|298720655|gb|EFI61602.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 212

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I+ G+   +IA  L +S  TV+ Y A ++ K    + +   AYA++N +
Sbjct: 149 LSEREMQTLLKIASGQRQTDIAQELMLSPKTVSVYRARVLEKLGMGSNAELTAYAIKNGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|264676607|ref|YP_003276513.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262207119|gb|ACY31217.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 212

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I+ G+   +IA  L +S  TV+ Y A ++ K    + +   AYA++N +
Sbjct: 149 LSEREMQTLLKIASGQRQTDIAQELMLSPKTVSVYRARVLEKLGMGSNAELTAYAIKNGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|291457497|ref|ZP_06596887.1| putative two-component system response regulator [Bifidobacterium
           breve DSM 20213]
 gi|291381332|gb|EFE88850.1| putative two-component system response regulator [Bifidobacterium
           breve DSM 20213]
 gi|295923855|gb|ADG63083.1| putative two-component system response regulator [Bifidobacterium
           breve]
          Length = 230

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +     L+G+E + L   ++G T+ EIA  LGIS  TV  +    + K   ++R+ A
Sbjct: 161 DTSYAHRGALSGKERDTLRMYADGSTTKEIAERLGISVATVATFERRALAKLGARSRAHA 220

Query: 237 IAYAVRNN 244
           I+  V+ +
Sbjct: 221 ISICVKRH 228


>gi|170726983|ref|YP_001761009.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169812330|gb|ACA86914.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 213

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I+ GK++ +IA  LGI+  TV  ++ ++++K   K+R  A  +AV + I
Sbjct: 152 LTQRELQNLKLIASGKSNKDIANTLGIAETTVKVHVKNLLKKLGLKSRVEAAVWAVEHKI 211


>gi|29899136|gb|AAP03103.1| putative 2-component system response regulator [Streptomyces
           griseochromogenes]
          Length = 222

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+ RE + +  I+ G+T+ E+A  L IS +TV +++A+I  K   + R    A+A
Sbjct: 154 QLSERETQVIRAIARGRTNQEVAAELFISLSTVKSHLATIQNKLQVRNRVEIAAWA 209


>gi|154813|gb|AAA64793.1| regulatory protein [Plasmid Ti]
          Length = 234

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E   L WI+ GKT +EIA + G+  N+V   +   M++   ++++   A A+R  ++
Sbjct: 177 KEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLRERMKRFDVRSKAHLTALAIRRKLI 234


>gi|66045354|ref|YP_235195.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256061|gb|AAY37157.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
          Length = 212

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 155 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 212


>gi|56477414|ref|YP_159003.1| transcriptional regulator NarL [Aromatoleum aromaticum EbN1]
 gi|56313457|emb|CAI08102.1| Nitrate/nitrite TWO-component response regulator NARL [Aromatoleum
           aromaticum EbN1]
          Length = 220

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           GRI++ D L  +   A  Q     S       D  LT +E   L  I+ G ++  IA  L
Sbjct: 128 GRIVVSDALTHLMAAALRQEKRPDSV-----TDAGLTEQEQRILERIAAGLSNKLIAREL 182

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           GI+  TV  ++  ++RK   ++R  A  +AV N 
Sbjct: 183 GIAEGTVKVHVKHVLRKLNFRSRVEAAVWAVANQ 216


>gi|331017354|gb|EGH97410.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 95

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L  + +G T+ EIA  L IS  TV ++++S++RK   KTR+  +A  V
Sbjct: 4   LGLLLQGCTNKEIARQLSISDYTVRDHVSSLLRKNQVKTRAELMARCV 51


>gi|297160149|gb|ADI09861.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 262

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E LT ++EG   D  A  LG+S  T   Y+A IMR    ++R  A   AVR  ++
Sbjct: 203 EVLTLMAEGYKDDAAARKLGLSVRTYRRYVADIMRDLRVESRFQAGVRAVRAGLM 257


>gi|291482971|dbj|BAI84046.1| hypothetical protein BSNT_00932 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 213

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +EV  L  I++G  S  IA  L +S  TV + + SI  K    +R+ A+  A++  
Sbjct: 148 QLTEKEVIVLKAIAKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKG 207

Query: 245 IV 246
           I+
Sbjct: 208 IL 209


>gi|300774649|ref|ZP_07084512.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506464|gb|EFK37599.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 214

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL  RE E + W     T  EIA  + +S  T++ Y  S+  K   K R+G + +A++++
Sbjct: 153 ELRDREKEFIKWACSELTYKEIADKMCLSPKTIDGYRDSVFVKLDIKNRAGLVLFALKHD 212

Query: 245 I 245
           +
Sbjct: 213 L 213


>gi|196229471|ref|ZP_03128336.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226703|gb|EDY21208.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 225

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 27/55 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E    I  GKT+ EIA IL +   TV+ Y   I  K   +  +    YA
Sbjct: 156 LTDRELEVFQLIGAGKTTREIAEILNLGMTTVDTYRTRIKEKLGLRNGTQLQHYA 210


>gi|170758988|ref|YP_001788912.1| transcriptional regulatory protein DegU (protease production
           enhancerprotein) [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405977|gb|ACA54388.1| transcriptional regulatory protein DegU [Clostridium botulinum A3
           str. Loch Maree]
          Length = 219

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E    +S+GK++ +I  IL ++  TV NY+  I+ K     R+
Sbjct: 160 LTPREREVAKLVSQGKSNKDICNILFLTEGTVKNYVTRILEKLELNNRT 208


>gi|73537502|ref|YP_297869.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72120839|gb|AAZ63025.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 215

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E +   ++G   +EIA  LG S +T+++     MRK    T +  I YA  N 
Sbjct: 154 DLTLRELEVVRLYAQGMQLNEIAAKLGRSVSTISSQKTVAMRKLGVNTNTDLIRYAYENG 213

Query: 245 IV 246
           ++
Sbjct: 214 LI 215


>gi|307946995|ref|ZP_07662330.1| putative transcriptional regulatory protein SgaR [Roseibium sp.
           TrichSKD4]
 gi|307770659|gb|EFO29885.1| putative transcriptional regulatory protein SgaR [Roseibium sp.
           TrichSKD4]
          Length = 216

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 34/54 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE   L  +S+G ++ ++A   GIS NTV  +++++  K +  +R+ A+A+
Sbjct: 149 LTKREKALLEALSKGLSNRQLASEFGISANTVKFHLSNLYEKLSVTSRTQAVAF 202


>gi|269956411|ref|YP_003326200.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305092|gb|ACZ30642.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 220

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE LT +  G ++ EIA  L IS +T   ++  +M K     R+  +  A  N +
Sbjct: 155 LTEREVEILTLVGSGLSNAEIADRLVISPHTAKTHVNRVMTKLHAHDRAQLVIAAYENGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|148271583|ref|YP_001221144.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829513|emb|CAN00426.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 245

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG  + EIA  L +   TV  +++ ++ K   + R  A+ +A    I
Sbjct: 180 LTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYERGI 239

Query: 246 V 246
           V
Sbjct: 240 V 240


>gi|301385099|ref|ZP_07233517.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061858|ref|ZP_07253399.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           K40]
 gi|302132157|ref|ZP_07258147.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331016190|gb|EGH96246.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 208

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208


>gi|300790735|ref|YP_003771026.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800249|gb|ADJ50624.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 221

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++   ++ EIA  L +   TV  +++ ++ K     R  A+ YA R+ +
Sbjct: 155 LTSREREVLLLLAGACSNAEIARKLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRHKL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|288801178|ref|ZP_06406633.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288331789|gb|EFC70272.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 318

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  + +G ++ EIA  L IS NTV  +  +I RK    + +G   YA+ NN 
Sbjct: 251 LSERERDVIVSLVQGMSNKEIAEHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVNNF 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|194292413|ref|YP_002008320.1| transcriptional regulator signal receiver n-trem domain,luxr c-term
           domain [Cupriavidus taiwanensis LMG 19424]
 gi|193226317|emb|CAQ72266.1| putative transcriptional regulator, signal receiver N-trem
           domain,LuxR C-term domain [Cupriavidus taiwanensis LMG
           19424]
          Length = 223

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E T RE+E +   ++G    EIA  LG S +TV++     MRK   +T +  I YA  + 
Sbjct: 162 EPTQRELEVIRLFAQGAQLTEIAAKLGRSVSTVSSQKTVAMRKLGVQTNTALIRYAYESG 221

Query: 245 IV 246
           ++
Sbjct: 222 LI 223


>gi|167633195|ref|ZP_02391520.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
 gi|167531233|gb|EDR93911.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
          Length = 233

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
           D  RIR  +  ++  G+ +++D +     L   + N+ +S +     D  L T RE+  +
Sbjct: 128 DPERIRDAIKGVY-NGQTVMQDVV-----LDKIKCNLMESKEDECKIDKCLFTERELSII 181

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 182 ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226


>gi|302554479|ref|ZP_07306821.1| response regulator [Streptomyces viridochromogenes DSM 40736]
 gi|302472097|gb|EFL35190.1| response regulator [Streptomyces viridochromogenes DSM 40736]
          Length = 222

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE++ L  ++EG  + EIA  L  S  TV N +  +  +   + R+ A+A+A+R   
Sbjct: 162 MTPRELDVLRLVAEGLDTGEIASKLSYSERTVKNVMHGLTTRLHLRNRAHAVAHALREGY 221

Query: 246 V 246
           +
Sbjct: 222 I 222


>gi|238061732|ref|ZP_04606441.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883543|gb|EEP72371.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 221

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +T RE + L  ++ G T+ EIA  L IS +TV  ++AS+M K   + R
Sbjct: 157 VTAREEDVLIAVARGLTNVEIADALHISLSTVKTHLASLMGKLGVRNR 204


>gi|209528219|ref|ZP_03276686.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209491341|gb|EDZ91729.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 236

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L  I  G+++ EIA  L I+  TV  ++ SI+ K     R+ A   A+R+ 
Sbjct: 175 LTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSG 233


>gi|254390623|ref|ZP_05005837.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812218|ref|ZP_06770861.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440627|ref|ZP_08215361.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704324|gb|EDY50136.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324817|gb|EFG06460.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 228

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 163 GLLAAYQANMFKSYD----VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           GL+A + A      D      +G+    LTGRE E L  ++ G ++DEI   L +S  TV
Sbjct: 135 GLIARFLAQGGDGADEQRAAAYGERLNALTGREREVLVLVAGGLSNDEIGERLDVSPLTV 194

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++   M K   + R+  +  A  + +V
Sbjct: 195 KTHVNRAMAKLGARDRAQLVVTAYESGLV 223


>gi|55980999|ref|YP_144296.1| response regulator [Thermus thermophilus HB8]
 gi|55772412|dbj|BAD70853.1| response regulator [Thermus thermophilus HB8]
          Length = 192

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++EG ++ EIA  L +S  TV +++ S+  K   + R  A++ A
Sbjct: 131 LTPREEEVLRLLAEGLSTKEIARALRLSPETVRSHLESLYAKLEARNRVEALSRA 185


>gi|291442180|ref|ZP_06581570.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291345075|gb|EFE72031.1| response regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 230

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ +  ++EG  + +IA  L  S  T+ + I  +  +   + R+ A+AYA+R   
Sbjct: 170 LTPREVDVMRLVAEGFGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAYALREGY 229

Query: 246 V 246
           +
Sbjct: 230 I 230


>gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 231

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ +
Sbjct: 168 IDLTPREQSVLNLVAQGLMNKEIARKLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEH 227

Query: 244 NIV 246
            + 
Sbjct: 228 GLA 230


>gi|257486234|ref|ZP_05640275.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289626569|ref|ZP_06459523.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289650161|ref|ZP_06481504.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867642|gb|EGH02351.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330888268|gb|EGH20929.1| LuxR response regulator receiver [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989289|gb|EGH87392.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010548|gb|EGH90604.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 208

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208


>gi|284990174|ref|YP_003408728.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063419|gb|ADB74357.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 201

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           L+ RE + L   ++G T  +IA  L +S  TV NY++S + KT  +TR
Sbjct: 141 LSTREADVLREAADGATVADIARRLFLSEGTVRNYLSSAIGKTGARTR 188


>gi|213970544|ref|ZP_03398671.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
 gi|213924715|gb|EEB58283.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
          Length = 212

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 155 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 212


>gi|166030393|ref|ZP_02233222.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC
           27755]
 gi|166029751|gb|EDR48508.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC
           27755]
          Length = 208

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           V      E T RE+E L  ++ G ++  IA  L IS +TV N+I  ++ KT  ++R+
Sbjct: 137 VGMATSHEFTEREMEVLRLMTTGASNAAIAEKLVISESTVKNHIHRMLEKTGCESRT 193


>gi|330942268|gb|EGH44908.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 208

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208


>gi|302527842|ref|ZP_07280184.1| predicted protein [Streptomyces sp. AA4]
 gi|302436737|gb|EFL08553.1| predicted protein [Streptomyces sp. AA4]
          Length = 340

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + LT RE +    +  G ++ +IA  LGIS NTV +++ S+  K   ++R 
Sbjct: 282 YRLTARERDVCREVLSGLSTSDIAARLGISANTVQDHLKSVFGKVGVRSRG 332


>gi|223935182|ref|ZP_03627100.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896066|gb|EEF62509.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 267

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 25/44 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           FELT RE+E L  I  GK +  IA  +GIS  TV  +   +M K
Sbjct: 180 FELTERELETLGHIVAGKPNKVIACDMGISIKTVEKHRQQVMNK 223


>gi|163788538|ref|ZP_02182983.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1]
 gi|159875775|gb|EDP69834.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1]
          Length = 207

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE + L  +SEG + D IA  L IS+NT+  ++ +I  K    +   A+  A + N
Sbjct: 146 ELSKREKDVLLQLSEGNSYDSIAENLFISKNTIKFHLKNIYIKLQVNSNIEAVQKANKEN 205

Query: 245 IV 246
           ++
Sbjct: 206 LL 207


>gi|160893007|ref|ZP_02073795.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50]
 gi|156865090|gb|EDO58521.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50]
          Length = 207

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT +E E +  +++G  + EIA  L +S  TV NY+++I+ K   + R+    +  +N
Sbjct: 146 YNLTEKEFELIRLVADGLNNKEIAEQLFLSEGTVRNYLSNILMKLDLRDRTQVACFYYKN 205


>gi|87200639|ref|YP_497896.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87136320|gb|ABD27062.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 207

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT  +++ L  + EGK + +IA  LG+S  TV  ++ +IMRK   + R+ A
Sbjct: 144 LTPTQLKVLLAVLEGKLNKQIAYDLGMSEATVKAHMTAIMRKLDVQNRTQA 194


>gi|167565790|ref|ZP_02358706.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
          Length = 261

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   KD   LT RE + L +++  KT+ +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 149 SYRIDSPKDALALTERERQVLFFLARNKTAKDIANILGLSVRTIEQYMENLRCKFSASSK 208

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 209 NELIDIAA 216


>gi|167463449|ref|ZP_02328538.1| Response regulator (CheY-like recever domain and HTH DNA-binding
           domain) [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + LT  E   +  ISEG ++ EIA  L +S  TV NYI+ I+ K + + R+
Sbjct: 158 YGLTKAEQAIVEKISEGLSNKEIAGTLFLSEETVKNYISGILDKFSLRDRT 208


>gi|153800849|ref|ZP_01955435.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3]
 gi|124123559|gb|EAY42302.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3]
          Length = 208

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT REVE    + +GK   EIA  L +S  TV+ + A+I+ K         I +A++++
Sbjct: 144 ELTKREVEVFDLLVKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHH 203

Query: 245 IV 246
           ++
Sbjct: 204 LL 205


>gi|118473768|ref|YP_890456.1| two-component system, regulatory protein [Mycobacterium smegmatis
           str. MC2 155]
 gi|118175055|gb|ABK75951.1| two-component system, regulatory protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 216

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  ++ G ++++I   L IS  T   ++++IMRK     R+ A+  A +  
Sbjct: 155 QLTDREIEVLRLLAAGLSNNKIGEKLFISATTAKFHVSNIMRKLDVSRRAEAVYAASKRG 214

Query: 245 IV 246
           ++
Sbjct: 215 LI 216


>gi|120436827|ref|YP_862513.1| LuxR family transcriptional regulator protein [Gramella forsetii
           KT0803]
 gi|117578977|emb|CAL67446.1| LuxR family transcriptional regulator protein [Gramella forsetii
           KT0803]
          Length = 199

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D EL  R+++ +   ++   +  IA  L IS  T+  +   + RKT T++R+G ++ + +
Sbjct: 135 DNELNNRDIKIILMAAKDLPNKAIAAELNISDRTLEYHNTRLFRKTGTQSRTGLVSTSYK 194

Query: 243 NNIV 246
           N+++
Sbjct: 195 NHLI 198


>gi|331010111|gb|EGH90167.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 208

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y   ++ K    +    I  A RN +
Sbjct: 148 LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|329944179|ref|ZP_08292438.1| putative nitrate/nitrite response regulator protein NarL
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530909|gb|EGF57765.1| putative nitrate/nitrite response regulator protein NarL
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 223

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT 202
           +L   +G  ++  R  ++ L+ AYQ+   ++      ++   EL  R  +  T + EG T
Sbjct: 124 LLRASRGEPVMSSRPTKM-LVDAYQSEQKRATAEARIQELVNELPPRLQDVYTCLLEGLT 182

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  IA  LGIS NTV  Y++ ++ +    +R+  IA A+
Sbjct: 183 NRRIARKLGISENTVRIYVSEVLHRLGHTSRTELIAAAL 221


>gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300075725|gb|ADJ65124.1| nitrate/nitrite response regulator transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   +  I+ G+++ EIA  L ++ +TV  ++ +++RK    +R     YAV + 
Sbjct: 155 KLTARERATMVCIARGQSNKEIARSLEVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHG 214

Query: 245 I 245
           +
Sbjct: 215 L 215


>gi|290475675|ref|YP_003468564.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Xenorhabdus bovienii SS-2004]
 gi|289174997|emb|CBJ81800.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Xenorhabdus bovienii SS-2004]
          Length = 219

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 27/36 (75%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           EL+ RE++ +T I++G+  +EI+ +L +S  TVN+Y
Sbjct: 148 ELSERELQIMTMITQGRKVNEISTLLNLSPKTVNSY 183


>gi|295680795|ref|YP_003609369.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440690|gb|ADG19858.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 210

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G++ ++IA    +S  T++ +   +M+K      +  I YA+R+ +
Sbjct: 148 LTDREFQVLQLIASGQSINDIAEACSLSAKTISTHKMRLMQKLGLSNNAEVIRYAIRHGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|238783332|ref|ZP_04627356.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970]
 gi|238715755|gb|EEQ07743.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970]
          Length = 238

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 36/56 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE+  L +  +G TS EIA  + IS++TV+ ++ +I++K   K +  AI+ A+
Sbjct: 178 LTKRELMILMFSVDGMTSHEIAGKIFISKSTVDFHMLNIIKKLNCKNKFQAISKAL 233


>gi|291299253|ref|YP_003510531.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568473|gb|ADD41438.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 228

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E LT ++ G ++ EIA  L +S  TV  +I  ++RK   + R+  +  A  + +
Sbjct: 159 VTEREREVLTLVARGLSNTEIAERLHLSLATVKTHIGHLLRKLTARDRAQLVIAAYESGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|124268100|ref|YP_001022104.1| ATP-dependent transcriptional regulator-like protein [Methylibium
           petroleiphilum PM1]
 gi|124260875|gb|ABM95869.1| ATP-dependent transcriptional regulator-like protein protein
           [Methylibium petroleiphilum PM1]
          Length = 905

 Score = 36.2 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE + L  + + ++++EIA  L +SR+TV  ++ +I  K   KTR  AI
Sbjct: 843 LTKREHKVLAMLVDYQSNEEIASALCVSRDTVKFHVRNIYSKLGVKTRLEAI 894


>gi|68249325|ref|YP_248437.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           86-028NP]
 gi|145628395|ref|ZP_01784196.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.1-21]
 gi|145638479|ref|ZP_01794089.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittII]
 gi|68057524|gb|AAX87777.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           86-028NP]
 gi|144980170|gb|EDJ89829.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.1-21]
 gi|145272808|gb|EDK12715.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittII]
 gi|309751610|gb|ADO81594.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R2866]
 gi|309973777|gb|ADO96978.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R2846]
          Length = 208

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             +G +IL D +  + L   ++ N   S          LT RE+  L  I+ G ++ +IA
Sbjct: 121 IAQGEVILSDSIKNLLLERTHEDNPLDS----------LTDREMGVLRQIATGLSNKQIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGA 236
             L IS  TV  +I +++RK    +R  A
Sbjct: 171 AQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|298486655|ref|ZP_07004713.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298158870|gb|EFH99932.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 212

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 155 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 212


>gi|262384081|ref|ZP_06077217.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|262294979|gb|EEY82911.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
          Length = 203

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N +
Sbjct: 136 LSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVNKL 195

Query: 246 V 246
           V
Sbjct: 196 V 196


>gi|83312988|ref|YP_423252.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947829|dbj|BAE52693.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 290

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R+ E L  + +GK++ EIA +L ++  TV  ++ +I++      R+ A+  A
Sbjct: 224 LTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAA 278


>gi|16272666|ref|NP_438884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           Rd KW20]
 gi|145630463|ref|ZP_01786243.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|145632075|ref|ZP_01787810.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           3655]
 gi|145634865|ref|ZP_01790573.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittAA]
 gi|145637737|ref|ZP_01793389.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittHH]
 gi|148827914|ref|YP_001292667.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittGG]
 gi|229844595|ref|ZP_04464734.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           6P18H1]
 gi|260579818|ref|ZP_05847648.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           RdAW]
 gi|260583177|ref|ZP_05850957.1| nitrate/nitrite response regulator protein narP [Haemophilus
           influenzae NT127]
 gi|319775331|ref|YP_004137819.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3047]
 gi|319897771|ref|YP_004135968.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3031]
 gi|329122673|ref|ZP_08251251.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           aegyptius ATCC 11116]
 gi|1171656|sp|P44845|NARP_HAEIN RecName: Full=Nitrate/nitrite response regulator protein homolog
 gi|1573730|gb|AAC22384.1| nitrate/nitrite response regulator protein (narP) [Haemophilus
           influenzae Rd KW20]
 gi|144983853|gb|EDJ91295.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|144986982|gb|EDJ93512.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           3655]
 gi|145268031|gb|EDK08027.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittAA]
 gi|145269086|gb|EDK09037.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittHH]
 gi|148719156|gb|ABR00284.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittGG]
 gi|229812309|gb|EEP47999.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           6P18H1]
 gi|260093102|gb|EEW77035.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           RdAW]
 gi|260093795|gb|EEW77703.1| nitrate/nitrite response regulator protein narP [Haemophilus
           influenzae NT127]
 gi|301169444|emb|CBW29044.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Haemophilus influenzae 10810]
 gi|317433277|emb|CBY81652.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3031]
 gi|317449922|emb|CBY86134.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3047]
 gi|327472547|gb|EGF17977.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           aegyptius ATCC 11116]
          Length = 208

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             +G +IL D +  + L   ++ N   S          LT RE+  L  I+ G ++ +IA
Sbjct: 121 IAQGEVILSDSIKNLLLERTHEDNPLDS----------LTDREMGVLRQIATGLSNKQIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGA 236
             L IS  TV  +I +++RK    +R  A
Sbjct: 171 AQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|289675088|ref|ZP_06495978.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
 gi|302185631|ref|ZP_07262304.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
          Length = 208

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208


>gi|194291957|ref|YP_002007864.1| response regulator protein [Cupriavidus taiwanensis LMG 19424]
 gi|193225861|emb|CAQ71807.1| Response regulator protein; Response regulator receiver domain, HTH
           LuxR domain; higly similar to B. subtilis
           Transcriptional regulatory protein degU (Protease
           production enhancer protein) [Cupriavidus taiwanensis
           LMG 19424]
          Length = 223

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT +E   L  ++EG+++ EIA  LG S  TV  +   + RK     R+  + YAV
Sbjct: 149 LTPKEATVLKLLAEGRSNKEIAERLGTSVRTVETHRLHLRRKLRVGGRAELVKYAV 204


>gi|329907901|ref|ZP_08274727.1| transcriptional regulator, LuxR-family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546883|gb|EGF31801.1| transcriptional regulator, LuxR-family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 186

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E    + EGKTS  IA  +G+S  TV  + A +M+K +  T SG + +
Sbjct: 126 KLTPREREIAALLVEGKTSKLIARQIGMSPRTVEMHRAKLMKKFSAST-SGELVH 179


>gi|327405789|ref|YP_004346627.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Fluviicola taffensis DSM 16823]
 gi|327321297|gb|AEA45789.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Fluviicola taffensis DSM 16823]
          Length = 186

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  ++ RE+E L  I++G ++ EIA  L +S NT+  + + +  K     R+ A+  A 
Sbjct: 120 EELGISKRELEVLELIAQGFSNHEIAERLFVSLNTIKTHSSKLFEKLEVNRRTQAVEVAK 179

Query: 242 RNNIV 246
           R  I+
Sbjct: 180 RLGII 184


>gi|300691205|ref|YP_003752200.1| two component transcriptional regulator, LuxR family [Ralstonia
           solanacearum PSI07]
 gi|299078265|emb|CBJ50913.1| two component transcriptional regulator, LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 215

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 32/69 (46%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        L+ RE+E    +  G+   EIA  L +S  TV+ Y   +M K    + +  
Sbjct: 140 DSQIAAHTRLSDREMEVYRRLVRGEPLTEIAASLCVSAKTVSTYKMRLMAKLQLPSEAAL 199

Query: 237 IAYAVRNNI 245
           + YA+RN +
Sbjct: 200 VRYAIRNQL 208


>gi|319764745|ref|YP_004128682.1| regulatory protein luxr [Alicycliphilus denitrificans BC]
 gi|317119306|gb|ADV01795.1| regulatory protein LuxR [Alicycliphilus denitrificans BC]
          Length = 212

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 33/52 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K A  +R+ A
Sbjct: 148 QLTPQQFRVLLCLADGLLNKQIAAQLGLAENTVKVHVTAILKKLACYSRTQA 199


>gi|295085346|emb|CBK66869.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bacteroides xylanisolvens XB1A]
          Length = 245

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI
Sbjct: 184 LTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 235


>gi|218886230|ref|YP_002435551.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757184|gb|ACL08083.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 231

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++EG  + EIA +L +S  TV  + A++ RK +  +++ A A+A
Sbjct: 158 LTPREREVLHLVAEGYRNREIAGLLVVSDRTVEKHRANLFRKLSLHSQADARAWA 212


>gi|111020362|ref|YP_703334.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110819892|gb|ABG95176.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1094

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 36/80 (45%)

Query: 167  AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            A Q    K          +LT RE E    ++EG T+ EIA  L IS  T   ++  I+ 
Sbjct: 1010 ALQKRTSKPAPATPAAKVKLTPREKEVGKLVAEGLTNKEIAERLVISPRTAEGHVDRILT 1069

Query: 227  KTATKTRSGAIAYAVRNNIV 246
            KT  ++R+   A+  R   +
Sbjct: 1070 KTGHRSRAQLAAWIAREESI 1089


>gi|320324215|gb|EFW80294.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 190

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 133 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 190


>gi|301310989|ref|ZP_07216918.1| transcriptional regulator, LuxR family [Bacteroides sp. 20_3]
 gi|300831052|gb|EFK61693.1| transcriptional regulator, LuxR family [Bacteroides sp. 20_3]
          Length = 203

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N +
Sbjct: 136 LSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKLQIHSASGLTIYAIVNKL 195

Query: 246 V 246
           V
Sbjct: 196 V 196


>gi|300785664|ref|YP_003765955.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299795178|gb|ADJ45553.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 345

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EL+ RE++ L  ++ G +  EIA  LGIS +T + ++++I  K    +R
Sbjct: 284 ELSERELDVLRLVAHGLSDQEIARRLGISAHTAHRHVSNIRGKLGVSSR 332


>gi|239817406|ref|YP_002946316.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803983|gb|ACS21050.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 224

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I++G ++ +IA  + +S NT+  +  +I RK + K+R+ A+  A +  +
Sbjct: 163 LSPRELKVLRLIAQGWSNQQIAEAVSLSVNTIEFHAKNIYRKLSVKSRTQAVHQATQQGL 222


>gi|254468811|ref|ZP_05082217.1| two component transcriptional regulator, LuxR family [beta
           proteobacterium KB13]
 gi|207087621|gb|EDZ64904.1| two component transcriptional regulator, LuxR family [beta
           proteobacterium KB13]
          Length = 199

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           ++G M    K  I   D L++         N F      + +  +L  RE E    I+ G
Sbjct: 94  KLGAMGFVTKSDI--SDNLFQAVEHILNGGNFFPETKASYNQLNQLNEREFEIFKMIASG 151

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRK 227
           K+   IA  + IS+ TV NY  SI +K
Sbjct: 152 KSIKNIAADMNISQKTVANYQTSIKQK 178


>gi|4883696|gb|AAD31608.1|AF065246_2 conjugal transfer regulatory protein [Agrobacterium tumefaciens]
          Length = 234

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ G T +EIA + G+  N+V   +   M++    +++  IA A+R  +
Sbjct: 174 LDPKEASYLRWIAVGMTMEEIADVEGVKYNSVRVKLREAMKRFDVHSKAHLIALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|326772247|ref|ZP_08231532.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326638380|gb|EGE39281.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 230

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G ++ EIA  L +  +TV +++  I+ K   + R  A+ +A RN +
Sbjct: 170 LTEREREVVQLLAGGMSNAEIAAELVVETSTVKSHLTRILPKIGARDRVQAVVWAFRNGL 229

Query: 246 V 246
           V
Sbjct: 230 V 230


>gi|325291416|ref|YP_004267597.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966817|gb|ADY57596.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 208

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           KG I+L   +      A   ++M +       +   ++ RE   L  + EG ++ EI   
Sbjct: 119 KGNIVLEREV------ATALSSMLREGKKTTPEQLAISPREFAILKLVGEGCSNREIGRE 172

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L IS  TV NY+ +++ K   + R+    + ++N
Sbjct: 173 LKISEGTVRNYVTALLEKLGFRDRTQLAIFYIKN 206


>gi|307705686|ref|ZP_07642533.1| DNA-binding response regulator [Streptococcus mitis SK597]
 gi|307620766|gb|EFN99855.1| DNA-binding response regulator [Streptococcus mitis SK597]
          Length = 199

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A
Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDASNRTDA 189


>gi|298247654|ref|ZP_06971459.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550313|gb|EFH84179.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 907

 Score = 36.2 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L  I  G+++  IA  L +S NTV  +++ I  K    +R+ A+A A
Sbjct: 839 LSERELEVLQCIMRGQSNQTIADHLQVSLNTVKTHMSHIFAKLHVNSRTQAVARA 893


>gi|254294922|ref|YP_003060945.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Hirschia baltica ATCC 49814]
 gi|254043453|gb|ACT60248.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Hirschia baltica ATCC 49814]
          Length = 905

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+E L +++ G ++ EIA +  IS NTV   + S+ +K     R  A+  A    +
Sbjct: 839 LTSGELEILNYLNNGLSNKEIARLTSISPNTVKFRLKSVFKKLDVSKRRDAVMIAREKGL 898

Query: 246 V 246
           V
Sbjct: 899 V 899


>gi|251795142|ref|YP_003009873.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542768|gb|ACS99786.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 230

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++G ++ EIA  L I   TV  +I +I  K   + R+ A  YA +  
Sbjct: 168 DLTEREMDVLKRVAQGMSNQEIADELFIGVKTVKFHITNIFNKLDVEDRTQAAIYAHKQG 227

Query: 245 I 245
           I
Sbjct: 228 I 228


>gi|190014846|ref|YP_001967610.1| TraR [Agrobacterium tumefaciens]
 gi|71849649|gb|AAZ50597.1| TraR [Agrobacterium tumefaciens]
          Length = 234

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ G T +EIA + G+  N+V   +   M++    +++  IA A+R  +
Sbjct: 174 LDPKEASYLRWIAVGMTMEEIADVEGVKYNSVRVKLREAMKRFDVHSKAHMIALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|46198976|ref|YP_004643.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46196600|gb|AAS81016.1| two-component response regulator [Thermus thermophilus HB27]
          Length = 192

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  ++EG ++ EIA  L +S  TV +++ S+  K   + R  A++ A
Sbjct: 131 LTPREEEVLRLLAEGLSTKEIARALRLSPETVRSHLESLYAKLEARNRVEALSRA 185


>gi|27367857|ref|NP_763384.1| response regulator [Vibrio vulnificus CMCP6]
 gi|27359430|gb|AAO08374.1|AE016813_126 Response regulator [Vibrio vulnificus CMCP6]
          Length = 119

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           EL+ RE   + ++ +GKT+ EIA IL IS  T++ Y   ++ K
Sbjct: 62  ELSDREAAVMNYLLKGKTNREIAKILSISDKTISTYKRRLLNK 104


>gi|127512655|ref|YP_001093852.1| LuxR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637950|gb|ABO23593.1| transcriptional regulator, LuxR family [Shewanella loihica PV-4]
          Length = 208

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 141 GAD-NLTIREREVLQALLSGSTNVDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 199


>gi|302543904|ref|ZP_07296246.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461522|gb|EFL24615.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 218

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A A+  R
Sbjct: 156 LTEQERRILLLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAFVAR 212


>gi|149921547|ref|ZP_01909998.1| luxR family two component system response regulator [Plesiocystis
           pacifica SIR-1]
 gi|149817622|gb|EDM77090.1| luxR family two component system response regulator [Plesiocystis
           pacifica SIR-1]
          Length = 236

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +F LT R+ E L  +SEG    +IA  +G+S + V   +A+   K   K+R+  I + V
Sbjct: 172 EFGLTARQTEALERVSEGHRDRQIAEDMGVSYSRVRQLLAAGFGKLGVKSRNDFIRFLV 230


>gi|46201852|ref|ZP_00208275.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 238

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R+ E L  + +GK++ EIA +L ++  TV  ++ +I++      R+ A+  A
Sbjct: 172 LTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAA 226


>gi|297622465|ref|YP_003703899.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297163645|gb|ADI13356.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 176

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE E L  +++G ++  I   LGIS  TV  ++A++  K   +TR
Sbjct: 119 QLTEREREVLGLLAQGLSNRAIGERLGISERTVKTHVANLFDKFGVRTR 167


>gi|302530526|ref|ZP_07282868.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302439421|gb|EFL11237.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 207

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  +++G+T+ EI   L I   TV  ++  +  K     R+ A+  A+  ++
Sbjct: 146 LSAREVEVLRLVAKGRTNAEIGRELHIGEATVKTHLLRVFSKLGVSDRTAAVTTALDRHL 205

Query: 246 V 246
           +
Sbjct: 206 L 206


>gi|302529845|ref|ZP_07282187.1| hypothetical protein SSMG_06227 [Streptomyces sp. AA4]
 gi|302438740|gb|EFL10556.1| hypothetical protein SSMG_06227 [Streptomyces sp. AA4]
          Length = 170

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG  + E A  +  S   V   I  + ++   + R+ A+AYA+RN  
Sbjct: 110 LTQREIDVLRLLAEGLDTAETAEKINFSERAVKKVIHDLSQRLDLRNRTHAVAYALRNGA 169

Query: 246 V 246
           +
Sbjct: 170 I 170


>gi|255532183|ref|YP_003092555.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255345167|gb|ACU04493.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 151

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE E L  +++G ++ EIA  L IS +TV  +++++  K   K+R  A+  A R  I
Sbjct: 90  LNSREYEILQLLAKGHSNAEIAGDLFISLSTVKTHVSNLFVKMNVKSRIKALEKAKRLKI 149

Query: 246 V 246
           +
Sbjct: 150 I 150


>gi|256831432|ref|YP_003160159.1| transcriptional regulator, LuxR family [Jonesia denitrificans DSM
           20603]
 gi|256684963|gb|ACV07856.1| transcriptional regulator, LuxR family [Jonesia denitrificans DSM
           20603]
          Length = 85

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K  +LT RE   L  + E  T ++IA  L ++RNTV + + S+ RK    TR+ A+ +A
Sbjct: 16  KAKDLTRRERIVLANLREDVTLEQIASKLFVTRNTVKSQVRSVYRKIGVSTRADAVQWA 74


>gi|218289394|ref|ZP_03493628.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240500|gb|EED07681.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 200

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  L+ RE++ L     G T+ ++A  L +S  TV NY++  + K    TR  AI  A
Sbjct: 137 DSPLSAREIDVLRLAKRGLTTRQMAKELFLSEGTVRNYLSGALAKLGCATRQEAIRKA 194


>gi|145640801|ref|ZP_01796383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|148826630|ref|YP_001291383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittEE]
 gi|229845772|ref|ZP_04465884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           7P49H1]
 gi|145274315|gb|EDK14179.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.4-21]
 gi|148716790|gb|ABQ99000.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittEE]
 gi|229810776|gb|EEP46493.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           7P49H1]
          Length = 208

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             +G +IL D +  + L   ++ N   S          LT RE+  L  I+ G ++ +IA
Sbjct: 121 IAQGEVILSDSIKNLLLERTHEDNPLDS----------LTDREMGVLRQIATGLSNKQIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGA 236
             L IS  TV  +I +++RK    +R  A
Sbjct: 171 AQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>gi|15893467|ref|NP_346816.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023003|gb|AAK78156.1|AE007530_7 Response regulator, CheY-like receiver domain and HTH DNA-binding
           domain [Clostridium acetobutylicum ATCC 824]
 gi|325507583|gb|ADZ19219.1| Response regulator, CheY-like receiver domain protein and HTH
           DNA-binding domain protein [Clostridium acetobutylicum
           EA 2018]
          Length = 213

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE++    + +GK++  IA  L ++  T+ NY++ I+ K     RS  I Y
Sbjct: 155 LTPREMDVANHVLKGKSNRAIAEALFLTEGTIKNYVSKILEKLELGNRSELILY 208


>gi|330826718|ref|YP_004390021.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|329312090|gb|AEB86505.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 209

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K      +    YA+RN +
Sbjct: 149 LSERELQTLVKIASGKRLSDIAEELMLSPKTVSVYRARVLEKLRLANNAELTVYAIRNRL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|284050135|ref|ZP_06380345.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
 gi|291569796|dbj|BAI92068.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 236

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L  I  G+++ EIA  L I+  TV  ++ SI+ K     R+ A   A+R+ 
Sbjct: 175 LTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSG 233


>gi|239993792|ref|ZP_04714316.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           macleodii ATCC 27126]
          Length = 222

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A  AN     D    +  +LT  +++ L  +S+G  + +IA  L IS +TV  ++++++R
Sbjct: 142 ASNANGHSGQDDFTNRLKQLTPHQLKVLRMVSDGLLNKQIAYELAISESTVKQHVSAVLR 201

Query: 227 KTATKTRSGA-IAY 239
           K     R+ A IA+
Sbjct: 202 KLGVINRTKAGIAF 215


>gi|256380091|ref|YP_003103751.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924394|gb|ACU39905.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ +E   L  I+EG T+ +IA  L ++  TV NY++S++ K     R+ A  YA +
Sbjct: 152 LSPQERRILDLIAEGLTNRQIAGRLFLAEKTVKNYVSSLLHKLGFDRRTEAGVYAAK 208


>gi|212635701|ref|YP_002312226.1| regulatory protein LuxR [Shewanella piezotolerans WP3]
 gi|212557185|gb|ACJ29639.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3]
          Length = 211

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +  G T+ +IA  L +S +T+  ++    RK    +R  AIA+A  N
Sbjct: 148 LTMREREVLQVLRSGSTNIDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWAQTN 205


>gi|303238259|ref|ZP_07324795.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302594305|gb|EFL64017.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 215

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +L  REVE +  I+EG ++ EIA  L +S     N I+ I+ K     R+   ++A +N
Sbjct: 153 IDLKEREVEIIRMIAEGMSNKEIASKLCLSFGRTKNIISEILAKLDLSDRNQLASFAFKN 212

Query: 244 NIV 246
            ++
Sbjct: 213 KLI 215


>gi|319764502|ref|YP_004128439.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317119063|gb|ADV01552.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 209

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K      +    YA+RN +
Sbjct: 149 LSERELQTLVKIASGKRLSDIAEELMLSPKTVSVYRARVLEKLRLANNAELTVYAIRNRL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|295690124|ref|YP_003593817.1| LuxR family two component transcriptional regulator [Caulobacter
           segnis ATCC 21756]
 gi|295432027|gb|ADG11199.1| two component transcriptional regulator, LuxR family [Caulobacter
           segnis ATCC 21756]
          Length = 201

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIA 238
           LT RE E L    EG+++ +IA +L +S  TV NY++   +K   A +  +G IA
Sbjct: 141 LTDREREILRLAEEGRSNKDIAEVLELSPGTVRNYLSEAAQKLGAANRVEAGRIA 195


>gi|256786676|ref|ZP_05525107.1| two-component system response transcriptional regulator
           [Streptomyces lividans TK24]
          Length = 202

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A A+  R
Sbjct: 140 LTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKLGMQRRSQAAAFVAR 196


>gi|288574415|ref|ZP_06392772.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570156|gb|EFC91713.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 211

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L + + G +S E+A  L IS  TV  ++ASI  K     ++ A+  A++  
Sbjct: 143 DLSPREREVLLFAARGLSSKEVASHLFISERTVQTHLASIYDKLGAHNKTEAMLLALKYG 202

Query: 245 IV 246
           ++
Sbjct: 203 LL 204


>gi|256376957|ref|YP_003100617.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921260|gb|ACU36771.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 492

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DF L+ RE++ L+ ++ G  + EIA  + +S  T+  ++  I  K    TR  A A AV 
Sbjct: 408 DFGLSARELDVLSRVARGLRNREIAREIQLSPATIKFHLVRIFEKLGVGTRGEAAAVAVE 467

Query: 243 NNIV 246
             +V
Sbjct: 468 FGLV 471


>gi|224368482|ref|YP_002602645.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691198|gb|ACN14481.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 212

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  ++ G T+ EIA    IS  TV+ Y A +++K   +  +    +A++N I
Sbjct: 150 LSMRELQVLRKLALGHTNHEIAASYNISVKTVDTYRARVLKKLNLRNNADLSRFAIKNRI 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|53717385|ref|YP_105375.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           ATCC 23344]
 gi|67643685|ref|ZP_00442429.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           GB8 horse 4]
 gi|254174245|ref|ZP_04880907.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|254204067|ref|ZP_04910426.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|254209044|ref|ZP_04915391.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|254355678|ref|ZP_04971958.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|52423355|gb|AAU46925.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 23344]
 gi|147744951|gb|EDK52032.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|147750267|gb|EDK57337.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|148023771|gb|EDK82833.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|160695291|gb|EDP85261.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|238525073|gb|EEP88502.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           GB8 horse 4]
          Length = 212

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    ++ G T  +IA  LGIS  TV  Y A ++ K      +  + YAV + I
Sbjct: 149 LSRREFEVFRRLAAGDTPADIAQALGISAKTVRIYKAHVLDKLELPNETALVRYAVAHRI 208


>gi|330875537|gb|EGH09686.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 208

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208


>gi|324997550|ref|ZP_08118662.1| putative GAF sensor protein [Pseudonocardia sp. P1]
          Length = 380

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+E +  ++ G T+ +IA +L ++  TV  ++  I+RK     R+ A+   +R+
Sbjct: 323 LTPRELEVMELMAAGHTNGKIASLLFVTEATVKAHVKHILRKLPAANRAEAVCRYLRD 380


>gi|323357662|ref|YP_004224058.1| DNA-binding HTH domain-containing proteins [Microbacterium
           testaceum StLB037]
 gi|323274033|dbj|BAJ74178.1| DNA-binding HTH domain-containing proteins [Microbacterium
           testaceum StLB037]
          Length = 471

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 11/113 (9%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---------DFELT 187
            AR R+   L+     + LRD    +G +    A      + + G             LT
Sbjct: 341 AARARLSPALIIGLAAVDLRDVAEWLGDVTPEAAEFLSRLEQYRGSLPNPPSPSVVPVLT 400

Query: 188 GREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E L W I +G ++ EI+   G+S NTV   ++++ RK    TR  A+A+
Sbjct: 401 SRE-ESLAWSIYDGASNKEISEKDGVSVNTVKVQLSTLYRKLGVSTRKQALAF 452


>gi|313149427|ref|ZP_07811620.1| response regulator receiver protein [Bacteroides fragilis 3_1_12]
 gi|313138194|gb|EFR55554.1| response regulator receiver protein [Bacteroides fragilis 3_1_12]
          Length = 251

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K 
Sbjct: 190 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 236


>gi|261497168|gb|ACX83628.1| putative two-component response regulator [uncultured soil
           bacterium V167]
          Length = 191

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L   +EG  S EIA  L ++  T+ NY+ S + K   + R  AI  A
Sbjct: 130 LTQREIDTLRLAAEGAGSSEIADQLHLAVGTIRNYLTSAVLKLHARNRLDAILIA 184


>gi|291614056|ref|YP_003524213.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584168|gb|ADE11826.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 208

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  + +GK+ +E+A  L IS  TV+ + A +M+K   +  +  I Y V + +
Sbjct: 148 LSEREYTILHLLVQGKSVNEVAAELVISNKTVSTHKARLMQKLNLQNNAELIRYGVEHGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|237713861|ref|ZP_04544342.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262409230|ref|ZP_06085774.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|294645794|ref|ZP_06723478.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294809468|ref|ZP_06768172.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446017|gb|EEO51808.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262352977|gb|EEZ02073.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|292638873|gb|EFF57207.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294443340|gb|EFG12103.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 255

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI
Sbjct: 194 LTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 245


>gi|294139532|ref|YP_003555510.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea
           DSS12]
 gi|224613098|dbj|BAH24209.1| regulator protein [Shewanella violacea]
 gi|293326001|dbj|BAJ00732.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea
           DSS12]
          Length = 209

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 32/49 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE++ L  +++GK++  ++  L IS  TV  ++ +++RK   K+R+
Sbjct: 152 LTPRELQILQLVAQGKSNRTLSEHLHISEGTVKVHVKNLLRKANAKSRT 200


>gi|188591560|ref|YP_001796159.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus
           taiwanensis]
 gi|170938955|emb|CAP63962.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus
           taiwanensis LMG 19424]
          Length = 210

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE + L  ++ G+T +EIA  L +S  T++ +   +M+K   +  +  I YA+R+ 
Sbjct: 148 LSDREFQVLQRLATGQTVNEIAESLSLSAKTISTHKMRLMQKLGLQNNAELIRYAIRHG 206


>gi|134095692|ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxydans]
 gi|133739595|emb|CAL62646.1| Response regulator receiver, LuxR family [Herminiimonas
           arsenicoxydans]
          Length = 210

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    + +G    +IA  L +S  TV+ Y A +++K   +  +G I YA++ N+
Sbjct: 149 LSKREYEIFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNMENNAGIIYYAIKQNL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|94314859|ref|YP_588068.1| LuxR family response regulator [Cupriavidus metallidurans CH34]
 gi|93358711|gb|ABF12799.1| DNA-binding response regulator, LuxR family (two-component response
           regulator activity) [Cupriavidus metallidurans CH34]
          Length = 220

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +EVE L  ++ G ++  I   L IS  TV++Y   +M+K A  +    I +A R  
Sbjct: 158 KLTDKEVEILRMLTRGMSNKAIGKALFISNKTVSSYKTRVMKKLAADSLVDLIDFARRCR 217

Query: 245 IV 246
           ++
Sbjct: 218 LI 219


>gi|260433757|ref|ZP_05787728.1| transcriptional regulatory protein DegU [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417585|gb|EEX10844.1| transcriptional regulatory protein DegU [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 213

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE E L  +++G ++ EIA  L I   TV +Y+ SI+ K   + R
Sbjct: 152 DLTHREEEILRRVAKGLSNKEIAAELSIQEKTVKHYMTSILSKLHARNR 200


>gi|239933771|ref|ZP_04690724.1| response regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 188

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ +  ++EG  + +IA  L  S  T+ + I  +  +   + R+ A+AYA+R   
Sbjct: 128 LTPREVDVMRLVAEGFGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAYALREGY 187

Query: 246 V 246
           +
Sbjct: 188 I 188


>gi|239928815|ref|ZP_04685768.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437136|ref|ZP_06576526.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340031|gb|EFE66987.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 217

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G ++ EIA  L IS  TV  ++  +  K   K R+ A+A A    I
Sbjct: 156 LSAREREVLALVARGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYDRGI 215

Query: 246 V 246
           +
Sbjct: 216 L 216


>gi|255034528|ref|YP_003085149.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254947284|gb|ACT91984.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 206

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE + +  I EG T+ E+AV + IS  TV  +I +I  K    +R   I+   R
Sbjct: 150 LTPREAQIVLAIEEGLTNKEVAVRMDISLETVKYHIKNIYEKLQVNSRHALISRKFR 206


>gi|297198108|ref|ZP_06915505.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714199|gb|EDY58233.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G ++ EIA  L +   TV ++++ ++ K   + R+ A+  A  + 
Sbjct: 157 QLTEREAEVLRLMTRGLSNAEIAARLVVGTETVKSHVSGVLAKLGARDRTQAVIAAYESG 216

Query: 245 IV 246
            V
Sbjct: 217 FV 218


>gi|167572884|ref|ZP_02365758.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 261

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   KD   LT RE + L +++  KT+ +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 149 SYRIDSPKDALALTERERQVLFFLARNKTAKDIANILGLSVRTIEQYMENLRCKFSASSK 208

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 209 NELIDIAA 216


>gi|320328623|gb|EFW84625.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882548|gb|EGH16697.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 208

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    I  A RN +V
Sbjct: 151 RELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVELIEMAKRNALV 208


>gi|312195733|ref|YP_004015794.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227069|gb|ADP79924.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 404

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            E+T RE+  L  +++G T+  IA  L IS  TV N++ S+ RK     R  A+  A
Sbjct: 242 LEITPREITVLVALADGLTAAGIARRLNISVRTVGNHLTSLYRKLDAPDRLTAVLRA 298


>gi|170782304|ref|YP_001710637.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156873|emb|CAQ02041.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 222

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +T RE + L  +  G ++ EIA  + +S  TV +++AS+MRK A + R   +A AVR
Sbjct: 161 ITPREGDVLQGVLLGWSNAEIAEEIALSSETVKSHVASLMRKLACRNR---VALAVR 214


>gi|160883554|ref|ZP_02064557.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483]
 gi|156110967|gb|EDO12712.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483]
          Length = 275

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             LT RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI
Sbjct: 212 LNLTNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 265


>gi|88808256|ref|ZP_01123766.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
 gi|88787244|gb|EAR18401.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
          Length = 235

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           EL+ RE+E    ++ G  ++ IA +LG+S  TV +++ + M K   + R+
Sbjct: 170 ELSPRELEVAAGVARGLKNNAIASLLGLSVETVKSHVGNAMDKLGARDRT 219


>gi|23006356|ref|ZP_00048713.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 180

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L  ++ G+++  IA  L I+  TV  ++ +I+RK   K R+ A  +A+   
Sbjct: 85  SLSSREVNILEGLALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKG 144

Query: 245 IV 246
           IV
Sbjct: 145 IV 146


>gi|331695587|ref|YP_004331826.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950276|gb|AEA23973.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 219

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  +++G T+  I   LG+S  TV +++ + +RK     R+  + YA+   +
Sbjct: 157 LTERETGVLRLVAKGLTARAIGERLGLSHRTVESHVQNTLRKLQLHNRAQLVRYAIEQGL 216


>gi|300728290|ref|ZP_07061658.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
 gi|299774525|gb|EFI71149.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
          Length = 322

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE + +  + +G T+ EI   L IS NTV  +  +I +K    + +G   YA+ 
Sbjct: 252 DEALSEREKDVIVALVQGMTNKEIGDHLCISINTVITHRRNIAKKLQIHSPAGLTIYAIV 311

Query: 243 NNIV 246
           NN++
Sbjct: 312 NNLI 315


>gi|290957183|ref|YP_003488365.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260646709|emb|CBG69806.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 974

 Score = 36.2 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G+T+ +I   L I+  T + ++++I+ K    +R+ A+A A R  +
Sbjct: 911 LTARESDVLRLLALGRTNRQIGDELFITGKTASVHVSNILAKLGAASRTEAVAIAYREGL 970

Query: 246 V 246
           +
Sbjct: 971 I 971


>gi|269793570|ref|YP_003313025.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269095755|gb|ACZ20191.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 862

 Score = 36.2 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT RE E L  +  G  + EIA  L +S+ T  N+++ ++RK    +R  A
Sbjct: 800 QLTPREREVLELVVAGLKNGEIAERLTLSKRTAENHVSRLLRKLGVSSREEA 851


>gi|253566600|ref|ZP_04844053.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5]
 gi|251944772|gb|EES85247.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5]
          Length = 278

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K 
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263


>gi|228999272|ref|ZP_04158852.1| Spore germination protein gerE [Bacillus mycoides Rock3-17]
 gi|228760469|gb|EEM09435.1| Spore germination protein gerE [Bacillus mycoides Rock3-17]
          Length = 52

 Score = 36.2 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R
Sbjct: 3   QDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLR 46


>gi|226365679|ref|YP_002783462.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244169|dbj|BAH54517.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 219

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 159 LTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 218


>gi|53715583|ref|YP_101575.1| putative transcriptional regulator [Bacteroides fragilis YCH46]
 gi|52218448|dbj|BAD51041.1| putative transcriptional regulator [Bacteroides fragilis YCH46]
          Length = 278

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K 
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263


>gi|84385413|ref|ZP_00988445.1| putative tetrathionate reductase complex: response regulator
           [Vibrio splendidus 12B01]
 gi|84380010|gb|EAP96861.1| putative tetrathionate reductase complex: response regulator
           [Vibrio splendidus 12B01]
          Length = 200

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           LT RE++ L  I +GK + +IA  L I+  TV  + AS+M+K + KT
Sbjct: 142 LTEREIDILKQIIDGKRNQKIADELCIAMRTVEVHRASLMKKFSAKT 188


>gi|330445311|ref|ZP_08308963.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489502|dbj|GAA03460.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 208

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 34/52 (65%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT RE++ L  +++G+ + +IA  L IS  TV  ++ S+++K   K+R+ A
Sbjct: 147 QLTERELQILQEVAKGQRNRQIAEQLFISEATVKVHMKSLLKKLQVKSRTAA 198


>gi|298249917|ref|ZP_06973721.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547921|gb|EFH81788.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 219

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+ RE++ L  I++G ++ EIA  L IS  TV  ++++I+ K     R+ A  +A
Sbjct: 153 QLSDRELDVLRLIADGCSNSEIAQKLIISEKTVKGHVSNILGKLHMVDRTQAAVFA 208


>gi|326775725|ref|ZP_08234990.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656058|gb|EGE40904.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 213

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  + EG ++ +I+  L +S+ TV +++  I  K    +R+ A+A A    +
Sbjct: 151 LTRRELEVLQLVGEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|325674370|ref|ZP_08154059.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325555050|gb|EGD24723.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 780

 Score = 36.2 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E    ++EG T+ EIA  L ISR TV+ ++  I+ K    +R
Sbjct: 719 LTKREHEVAELVAEGLTNKEIAQRLTISRRTVDGHVDHILTKLGFTSR 766


>gi|291297909|ref|YP_003509187.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567129|gb|ADD40094.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 134

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ GK++ EI   L I+ +TV  +   + RK   + R+ A+A A R  I
Sbjct: 73  LSERETQVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRIGI 132

Query: 246 V 246
           +
Sbjct: 133 L 133


>gi|261251165|ref|ZP_05943739.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP
           102891]
 gi|260938038|gb|EEX94026.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP
           102891]
          Length = 205

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 33/52 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ELT RE++ L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A
Sbjct: 142 ELTDREMQILKEVAKGLRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAA 193


>gi|222085009|ref|YP_002543538.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722457|gb|ACM25613.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 213

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  I  G+++ EIA  LGI+  T   +  ++ RK    T +G I YA+ + I
Sbjct: 149 LTPREHHILGLIVTGRSNREIAEELGITPATAETHRKNLKRKLGIATTAGLIRYALDHGI 208


>gi|254387494|ref|ZP_05002733.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064]
 gi|294815121|ref|ZP_06773764.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443484|ref|ZP_08218218.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701220|gb|EDY47032.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327720|gb|EFG09363.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 230

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L+ + EG ++ EIAV L ++  TV  +++ ++ K   ++R  A   A
Sbjct: 171 LTRREREVLSAVGEGLSNAEIAVRLSMAEATVKTHVSRLLNKLELRSRVQAAVLA 225


>gi|83592836|ref|YP_426588.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodospirillum rubrum ATCC 11170]
 gi|83575750|gb|ABC22301.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Rhodospirillum rubrum ATCC 11170]
          Length = 1483

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            L+ R+ E +  +  G+ S  IA  LGIS+ TV ++ A IM+K   K+
Sbjct: 1417 LSARQREIMEMVLAGQPSKNIAADLGISQRTVESHRALIMKKLGVKS 1463


>gi|60683534|ref|YP_213678.1| transcriptional regulator GerE [Bacteroides fragilis NCTC 9343]
 gi|60494968|emb|CAH09784.1| putative transcriptional regulator GerE, LuxR family [Bacteroides
           fragilis NCTC 9343]
          Length = 278

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K 
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263


>gi|89092860|ref|ZP_01165812.1| DNA-binding response regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
 gi|89082885|gb|EAR62105.1| DNA-binding response regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
          Length = 211

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E    ++ G++S  IA  L ++  TV+NYI +I  K    + +  +  AV   
Sbjct: 146 ELTQREFEVFVMLARGQSSQIIADTLELNIKTVSNYITTIKSKLQISSTAEIVHLAVEAG 205

Query: 245 IV 246
           +V
Sbjct: 206 VV 207


>gi|87308851|ref|ZP_01090990.1| putative two-component system response regulator [Blastopirellula
           marina DSM 3645]
 gi|87288562|gb|EAQ80457.1| putative two-component system response regulator [Blastopirellula
           marina DSM 3645]
          Length = 233

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L  ++ GKT  EIA  L +S  TVN  +  +  K A ++ +  + ++V   +
Sbjct: 163 LTHREISVLRELAAGKTQLEIAAALDLSERTVNKEVGDLKEKLALRSLNELLIFSVNEGL 222


>gi|312140819|ref|YP_004008155.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311890158|emb|CBH49476.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 224

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 164 LTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 223


>gi|260428295|ref|ZP_05782274.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260422787|gb|EEX16038.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 220

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L  +++GK++ EIA  L I   TV  ++ ++ RK     R+ A  +A
Sbjct: 160 LSRREMEVLERLTQGKSNKEIARDLDIREPTVKLHVKTLYRKIGAANRTQAAIFA 214


>gi|171741205|ref|ZP_02917012.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC
           27678]
 gi|283455432|ref|YP_003359996.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|306823500|ref|ZP_07456875.1| two component system response regulator [Bifidobacterium dentium
           ATCC 27679]
 gi|309802650|ref|ZP_07696754.1| transcriptional regulator, LuxR family [Bifidobacterium dentium
           JCVIHMP022]
 gi|171276819|gb|EDT44480.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC
           27678]
 gi|283102066|gb|ADB09172.1| Two-component response regulator [Bifidobacterium dentium Bd1]
 gi|304553207|gb|EFM41119.1| two component system response regulator [Bifidobacterium dentium
           ATCC 27679]
 gi|308220714|gb|EFO77022.1| transcriptional regulator, LuxR family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 230

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+    +A    I
Sbjct: 170 LSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 229

Query: 246 V 246
           V
Sbjct: 230 V 230


>gi|332140807|ref|YP_004426545.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550829|gb|AEA97547.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 222

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA-IAY 239
           +LT  +++ L  +S+G  + +IA  L IS +TV  ++++++RK     R+ A IA+
Sbjct: 160 QLTPHQLKVLRMVSDGLLNKQIAYELAISESTVKQHVSAVLRKLGVINRTKAGIAF 215


>gi|265767479|ref|ZP_06095145.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16]
 gi|263252784|gb|EEZ24296.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16]
          Length = 278

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K 
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263


>gi|255011592|ref|ZP_05283718.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 278

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K 
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263


>gi|220914644|ref|YP_002489953.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219861522|gb|ACL41864.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 230

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++EG ++ EIA    +S  TV  ++  I+ K   + R  A+ YA    
Sbjct: 162 DLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|111023173|ref|YP_706145.1| response regulator [Rhodococcus jostii RHA1]
 gi|110822703|gb|ABG97987.1| response regulator [Rhodococcus jostii RHA1]
          Length = 219

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 159 LTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 218


>gi|120406420|ref|YP_956249.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119959238|gb|ABM16243.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 212

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REVE L  ++ G ++++I   L IS  T   ++++IMRK     R+ A+  A +  
Sbjct: 151 QLTDREVEVLRLLAAGLSNNKIGERLYISATTAKFHVSNIMRKLEVSRRAEAVYAASKRG 210

Query: 245 IV 246
           ++
Sbjct: 211 LI 212


>gi|54024802|ref|YP_119044.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016310|dbj|BAD57680.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 314

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ++G  + EIA  L I  +TV  ++ +I+R+T +  R+ A  YA R
Sbjct: 263 AQGAANTEIARALRIGASTVATHVEAILRRTGSPNRTAAAVYATR 307


>gi|126445165|ref|YP_001062130.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 668]
 gi|126224656|gb|ABN88161.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 668]
          Length = 212

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    ++ G T  +IA  LGIS  TV  Y A ++ K      +  + YAV + I
Sbjct: 149 LSRREFEVFRRLAAGDTPADIAQALGISAKTVRIYKAHVLDKLELPNETALVRYAVAHRI 208


>gi|332307927|ref|YP_004435778.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175256|gb|AEE24510.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 916

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E LT + EG ++ EIA  L ++ NTV  ++ ++  K A   R   I  A+   +V
Sbjct: 857 TKRELEILTLVVEGASNTEIADRLFVTANTVKFHMKNLYSKLAVNNRVKLITTAIHLGLV 916


>gi|332520649|ref|ZP_08397111.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
 gi|332044002|gb|EGI80197.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
          Length = 212

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%)

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE ++ I+E  T+ EIA  L +S++T+ +Y  +++ K   +  +G   YA++   V
Sbjct: 153 KREVEVISLIAEEFTTQEIADKLFLSKHTIESYRKNLITKLNVRNLAGLTKYAIKKGYV 211


>gi|330959015|gb|EGH59275.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 87

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GKT+ EI+ I   S  TV+ + ++I RK    +   A+  A+R  
Sbjct: 23  QLTVKERQILEWVAIGKTAWEISRIQECSEATVHFHTSNIRRKFEVHSLRAALVIAIRQG 82

Query: 245 IV 246
           ++
Sbjct: 83  VI 84


>gi|330938306|gb|EGH41953.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330976814|gb|EGH76848.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 260

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 189 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245


>gi|322392560|ref|ZP_08066020.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321144552|gb|EFX39953.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 199

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +EV  L  +++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEVAVLHGVAQGLSNQEIADQLYLSNGTVRNYMTNILSKLGASNRTEAAKTA 193


>gi|239988349|ref|ZP_04709013.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 224

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAVRN 243
           LT RE E L  +  G +++EI   L +SR TV ++++S++ K   A + ++  IA  +R 
Sbjct: 155 LTAREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIASGMRR 214

Query: 244 N 244
            
Sbjct: 215 E 215


>gi|116672676|ref|YP_833609.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116612785|gb|ABK05509.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 250

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG ++ EIA    +S  TV  ++  I+ K   + R  A+ YA    +
Sbjct: 183 LTPREMEMLEAMAEGLSNAEIAHRFFLSEATVKTHVRRILAKLHLRDRVQAVVYAYETGL 242

Query: 246 V 246
           V
Sbjct: 243 V 243


>gi|317125093|ref|YP_004099205.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589181|gb|ADU48478.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 238

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           ELT RE E L +++ G    EIA  L +S  TV N++ +I  K
Sbjct: 172 ELTDRETEILKYVATGMGYKEIAAALFLSHRTVQNHVQNIFGK 214


>gi|298482318|ref|ZP_07000505.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
 gi|298271605|gb|EFI13179.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
          Length = 255

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI
Sbjct: 194 LTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 245


>gi|290957194|ref|YP_003488376.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260646720|emb|CBG69817.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 1089

 Score = 36.2 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LTGRE + L  ++ G+T+ +IA  L IS  T + ++++I+ K     R  A A A R
Sbjct: 1018 LTGREHDVLRLVAVGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHR 1074


>gi|259047361|ref|ZP_05737762.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035983|gb|EEW37238.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 202

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE E L  ++EG  + EIA  + +S  TV NY+++++ K   + R+    Y
Sbjct: 144 LSERENELLYLVAEGFNNKEIAEKMYLSEGTVRNYLSALLEKLELRDRTQLAVY 197


>gi|167723020|ref|ZP_02406256.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
          Length = 212

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    ++ G T  +IA  LGIS  TV  Y A ++ K      +  + YAV + I
Sbjct: 149 LSRREFEVFRRLAAGDTPADIAQALGISAKTVRIYKAHVLDKLELPNETALVRYAVAHRI 208


>gi|126729492|ref|ZP_01745306.1| Response regulator [Sagittula stellata E-37]
 gi|126710482|gb|EBA09534.1| Response regulator [Sagittula stellata E-37]
          Length = 218

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+EG ++  IA  L IS  TV+N+   +M K    + +  +AYA+++ +
Sbjct: 152 LTMRERQVLYLIAEGCSNAAIAERLSISVKTVDNHRTRLMAKLQVHSVAQLVAYALKSGL 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|330836852|ref|YP_004411493.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
 gi|329748755|gb|AEC02111.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
          Length = 180

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S+    G+   L+ RE +  +  + G T  EIA  LG+  +TV  +  +I RKT   + S
Sbjct: 109 SFHSPSGEAICLSARECQVASLTANGMTCKEIAWELGVKESTVAAHRRNIYRKTGLSSSS 168

Query: 235 GAIAYAVRNNI 245
              A+ VR+ I
Sbjct: 169 QLAAWVVRSEI 179


>gi|331267046|ref|YP_004326676.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|326683718|emb|CBZ01336.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 199

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  + 
Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIATESG 197


>gi|257485770|ref|ZP_05639811.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|302130292|ref|ZP_07256282.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|331012866|gb|EGH92922.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 257

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LTGRE+E L     G ++ EIA  L +S  TV  +  +   K   K++S   AY  ++ 
Sbjct: 196 QLTGREIEVLKLALSGFSNSEIAGKLSVSPETVKVHRRNFYSKLNIKSQSELFAYFFQST 255

Query: 245 I 245
           I
Sbjct: 256 I 256


>gi|239945308|ref|ZP_04697245.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991767|ref|ZP_04712431.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448770|ref|ZP_06588160.1| two component system DNA binding response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291351717|gb|EFE78621.1| two component system DNA binding response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 217

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  + EG ++ +I+  L +S+ TV +++  I  K    +R+ A+A A    +
Sbjct: 155 LTRRELEVLQLVGEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRL 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|108802949|ref|YP_642886.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764192|gb|ABG03074.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 222

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG ++ EIA  L +S +T   ++ +I+ K    +R  A+  A R  +
Sbjct: 156 LTPREREVLQALAEGLSNREIAERLHMSVDTERTHMVNILSKLGAHSRLQALVLAARAGV 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|306828869|ref|ZP_07462061.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304429047|gb|EFM32135.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 199

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  + 
Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLNAGNRTEAANIATESG 197


>gi|284046201|ref|YP_003396541.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950422|gb|ADB53166.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 201

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R +  +R+ + GL AA  +            D  LT RE E L       T  E+A  L 
Sbjct: 117 RAVAGERIVDPGLAAAALST----------GDSPLTPREREVLAAARTEGTVAELASALH 166

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAI 237
           +S  T  N++++IMRK    +R  AI
Sbjct: 167 LSHGTARNHLSAIMRKLGANSRIEAI 192


>gi|256372218|ref|YP_003110042.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008802|gb|ACU54369.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 223

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           EL+ +E      I +GKT+ EIA  + ++  TV NY+++I+ K     RS   A   R
Sbjct: 150 ELSPQERRIFDLIVDGKTNREIAESVFLAEKTVKNYVSNILSKLGMHHRSEIAALGAR 207


>gi|326381911|ref|ZP_08203604.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199337|gb|EGD56518.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 221

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +AV   I
Sbjct: 161 LTRREMEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQQSNRNALTRWAVNRQI 220


>gi|301165031|emb|CBW24597.1| putative transcriptional regulator GerE, LuxR family [Bacteroides
           fragilis 638R]
          Length = 278

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K 
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKN 263


>gi|297243056|ref|ZP_06926994.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis AMD]
 gi|296889267|gb|EFH28001.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis AMD]
          Length = 246

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244
           L  +E++ +  +++G T+++IA  LG+  NT+N +I  I +K     R  AI A+A   N
Sbjct: 159 LPPQELKIMDLLAKGYTTNQIAAQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218


>gi|270313641|gb|ACZ73896.1| FixJ [Azospirillum brasilense]
          Length = 230

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L W+ EGK++  IA  L IS  TV  + A +M K    +    +  A+   I
Sbjct: 166 LTPRERDVLQWLVEGKSNKVIAFELSISPRTVEIHRARVMEKMRADSLPSLVRMALAAGI 225


>gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 226

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  +++G  + EIA  L  S   +  Y++ +  KT T +R+  + +A+ +
Sbjct: 163 IDLTPREQSVLDLVAQGLMNKEIARHLNTSVRNIEKYVSRLFSKTGTNSRTELVRFALEH 222

Query: 244 NI 245
            +
Sbjct: 223 GL 224


>gi|167840151|ref|ZP_02466835.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 214

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT RE + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R
Sbjct: 146 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYR 203


>gi|149928347|ref|ZP_01916588.1| hypothetical protein LMED105_00475 [Limnobacter sp. MED105]
 gi|149822932|gb|EDM82177.1| hypothetical protein LMED105_00475 [Limnobacter sp. MED105]
          Length = 203

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +T R+V  L  IS+G+++ EIA  LG+S  TV  ++ SI+ +   + R
Sbjct: 135 ITERQVSVLYRISKGESNHEIAQNLGLSPETVKTHVRSILARLNARNR 182


>gi|126740186|ref|ZP_01755875.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
 gi|126718641|gb|EBA15354.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
          Length = 215

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ +E   L  +++G ++ E++  L IS NTV  ++++I  K + K R+ AIAY
Sbjct: 147 LSRKERAILESLAKGMSNRELSKALQISTNTVKFHLSNIYEKLSVKNRAQAIAY 200


>gi|187926842|ref|YP_001893187.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|241665171|ref|YP_002983530.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728596|gb|ACD29760.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|240867198|gb|ACS64858.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 218

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G+++ EIA  L ++ +TV  ++ ++++K    +R     YAV + +
Sbjct: 156 LTPREREIVKGLARGESNKEIARTLDVAESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGL 215


>gi|72160692|ref|YP_288349.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71914424|gb|AAZ54326.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 201

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     +  LT RE++ L   S G +   IA  L +S  TV NY++S + K     R 
Sbjct: 130 AADAMMAGENPLTAREIDVLRAASTGASVAAIARTLHLSEGTVRNYLSSAISKLGEANRI 189

Query: 235 GAI 237
            AI
Sbjct: 190 AAI 192


>gi|325965270|ref|YP_004243176.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323471357|gb|ADX75042.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 230

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++EG ++ EIA    +S  TV  ++  I+ K   + R  A+ YA    
Sbjct: 162 DLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|322388622|ref|ZP_08062222.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321140542|gb|EFX36047.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 199

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +EV  L  +++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTNILSKLGASNRTEAAKTA 193


>gi|307323931|ref|ZP_07603140.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890380|gb|EFN21357.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G  + EIA  L IS  TV  ++  I  K   +TR+GA+A A    +
Sbjct: 180 LSERERDILRQLARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVATERRL 239

Query: 246 V 246
           +
Sbjct: 240 L 240


>gi|293401509|ref|ZP_06645652.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305147|gb|EFE46393.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 83

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E    +    ++ EIA  +GIS  TV N+I+++M K   K R+ A+
Sbjct: 21  LTPREKEVFELLIANYSTREIAKRMGISDKTVRNHISNVMLKLGVKGRAQAV 72


>gi|295701248|ref|YP_003610249.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295441571|gb|ADG20738.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 210

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G++ +EIA    +S  T++ +   +MRK      +  I YA+R+ +
Sbjct: 148 LSDREFQVLQMLAAGRSINEIAETCTLSAKTISTHKMRLMRKLGLSNNAELIRYAIRHGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|290957262|ref|YP_003488444.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646788|emb|CBG69885.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G  + EIA  L IS  TV  ++  +  K   K R+ A+A A    I
Sbjct: 163 LSAREREVLALVARGTANREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGI 222

Query: 246 V 246
           +
Sbjct: 223 L 223


>gi|239941886|ref|ZP_04693823.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291445336|ref|ZP_06584726.1| response regulator [Streptomyces roseosporus NRRL 15998]
 gi|291348283|gb|EFE75187.1| response regulator [Streptomyces roseosporus NRRL 15998]
          Length = 234

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAVRN 243
           LT RE E L  +  G +++EI   L +SR TV ++++S++ K   A + ++  IA  +R 
Sbjct: 155 LTAREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIASGMRR 214

Query: 244 N 244
            
Sbjct: 215 E 215


>gi|153852992|ref|ZP_01994429.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814]
 gi|149754634|gb|EDM64565.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814]
          Length = 223

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           DV   +   LT  E + +  +  G ++ EIA  L +S  TV NY++ I+ K   + R+  
Sbjct: 148 DVDQKRTENLTKTEWKIINEVGRGSSNKEIAENLNLSEGTVRNYLSGILNKLEFRDRTQL 207

Query: 237 IAYAVRNNI 245
             +AV+N +
Sbjct: 208 AIWAVQNKV 216


>gi|149280063|ref|ZP_01886188.1| putative transcriptional regulator GerE, LuxR family protein
           [Pedobacter sp. BAL39]
 gi|149229260|gb|EDM34654.1| putative transcriptional regulator GerE, LuxR family protein
           [Pedobacter sp. BAL39]
          Length = 254

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 26/42 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           L+ RE E LT I  GK S EIA +  IS NTVN +  +I+ K
Sbjct: 194 LSVREKEILTLIRSGKMSIEIADLCSISINTVNRHRQNILEK 235


>gi|78063560|ref|YP_373468.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77971445|gb|ABB12824.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 216

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+E L  I EG T  +IA  +G S NTV  +  +I RK      +  I ++  N
Sbjct: 152 LSPREIEILRMIGEGLTKQQIAERIGHSANTVEAHRTNIKRKLGLDNNAELIRFSALN 209


>gi|330895602|gb|EGH27910.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 260

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 189 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245


>gi|300784836|ref|YP_003765127.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794350|gb|ADJ44725.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 212

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE++ +  ++ G+T+DEI   L +S  TV  +I +  RK   + R+
Sbjct: 151 LTPRELDVVKAVARGETNDEICRSLVVSMPTVKTHIGAAKRKLGVRNRT 199


>gi|139439378|ref|ZP_01772819.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC
           25986]
 gi|133775157|gb|EBA38977.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC
           25986]
          Length = 209

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
           LT RE E    I+ G  + EIA    +   TV N+I+SI+ K   + R+  AIAY
Sbjct: 152 LTDREFEVAELIARGLDNKEIAATAYMGEGTVRNHISSILAKMGLRNRTQIAIAY 206


>gi|41409369|ref|NP_962205.1| hypothetical protein MAP3271c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398189|gb|AAS05819.1| hypothetical protein MAP_3271c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 222

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A + N
Sbjct: 150 LTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASKLN 208


>gi|325067354|ref|ZP_08126027.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
          Length = 244

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +S+G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    +
Sbjct: 183 LTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETGL 242

Query: 246 V 246
           +
Sbjct: 243 M 243


>gi|302531276|ref|ZP_07283618.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440171|gb|EFL11987.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 229

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ +   + G T+ EI   L +S +TV  ++AS+  K   + R    A+A R+ +
Sbjct: 168 LTARELDVVKAAARGLTNTEIGAELFLSLSTVKTHLASVQGKVGARNRVEIAAWAWRSGV 227

Query: 246 V 246
           V
Sbjct: 228 V 228


>gi|325675545|ref|ZP_08155229.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|325553516|gb|EGD23194.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 224

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 164 LTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 223


>gi|227511558|ref|ZP_03941607.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227085203|gb|EEI20515.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 202

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ +E+  L   ++G T+ EIA  L +S  TV NY+++I  K     R  A+  A  
Sbjct: 138 DNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKN 197

Query: 243 N 243
           N
Sbjct: 198 N 198


>gi|171911633|ref|ZP_02927103.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 222

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +L+ RE E      EGKT+ EIA  L +S  TV+ +   I  K    T +  I  AVR+
Sbjct: 159 KLSDREFEVFRLFGEGKTAKEIAAQLNLSPKTVSVHRDHIKEKLGFSTSAEMIRQAVRH 217


>gi|167577459|ref|ZP_02370333.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 214

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT RE + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R
Sbjct: 146 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYR 203


>gi|53721797|ref|YP_110782.1| GerE family regulatory protein [Burkholderia pseudomallei K96243]
 gi|76819120|ref|YP_337498.1| GerE family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|126457704|ref|YP_001075083.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134279390|ref|ZP_01766103.1| GerE family regulatory protein [Burkholderia pseudomallei 305]
 gi|167742004|ref|ZP_02414778.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167819187|ref|ZP_02450867.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
 gi|167827561|ref|ZP_02459032.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
 gi|167849035|ref|ZP_02474543.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|167897634|ref|ZP_02485036.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
 gi|167905997|ref|ZP_02493202.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914299|ref|ZP_02501390.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
 gi|167922205|ref|ZP_02509296.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217418343|ref|ZP_03449850.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226195056|ref|ZP_03790647.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507638|ref|ZP_04520353.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|242313653|ref|ZP_04812670.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254183194|ref|ZP_04889786.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|254189816|ref|ZP_04896325.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254192904|ref|ZP_04899339.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254262376|ref|ZP_04953241.1| GerE family regulatory protein [Burkholderia pseudomallei 1710a]
 gi|254300090|ref|ZP_04967536.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|52212211|emb|CAH38231.1| GerE family regulatory protein [Burkholderia pseudomallei K96243]
 gi|76583593|gb|ABA53067.1| GerE family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|126231472|gb|ABN94885.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|134249809|gb|EBA49890.1| GerE family regulatory protein [Burkholderia pseudomallei 305]
 gi|157810211|gb|EDO87381.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157937493|gb|EDO93163.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169649658|gb|EDS82351.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|184213727|gb|EDU10770.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|217397647|gb|EEC37662.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225932861|gb|EEH28857.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999843|gb|EEP49267.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|242136892|gb|EES23295.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254213378|gb|EET02763.1| GerE family regulatory protein [Burkholderia pseudomallei 1710a]
          Length = 212

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    ++ G T  +IA  LGIS  TV  Y A ++ K      +  + YAV + I
Sbjct: 149 LSRREFEVFRRLAAGDTPADIAQALGISAKTVRIYKAHVLDKLELPNETALVRYAVAHRI 208


>gi|118466851|ref|YP_883258.1| DevR family transcriptional regulator [Mycobacterium avium 104]
 gi|254776535|ref|ZP_05218051.1| two component transcriptional regulatory protein devr
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118168138|gb|ABK69035.1| two component transcriptional regulatory protein devr
           [Mycobacterium avium 104]
          Length = 222

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A + N
Sbjct: 150 LTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASKLN 208


>gi|94314355|ref|YP_587564.1| LuxR family LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93358207|gb|ABF12295.1| ATP-dependent transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 904

 Score = 36.2 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+  L  ++EG ++  IA  L +S +TV  ++ +I  K    +R+ A+A A R  +
Sbjct: 843 LTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRTHLRNINNKICAHSRTQAVAIARRLGV 902

Query: 246 V 246
           +
Sbjct: 903 I 903


>gi|296784937|dbj|BAJ08165.1| putative LuxR-family transcriptional regulator [Streptomyces
           murayamaensis]
          Length = 381

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           K +ELT RE+E   +I+ G  + E+A  L +S +TV +++ +I  K    +R   +A
Sbjct: 305 KAYELTDRELEITQYIARGLGTAEMAGKLFLSPHTVRDHVKAIFEKVRVSSRGELVA 361


>gi|291007044|ref|ZP_06565017.1| hypothetical protein SeryN2_21195 [Saccharopolyspora erythraea NRRL
            2338]
          Length = 1190

 Score = 35.8 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+  E+     ++EG+++ EIA +L + R  +   +ASI+ K    +RS AI   VR  +
Sbjct: 1128 LSPEEIRIAALVAEGRSNPEIAALLALPRRVIQGRVASILGKLNAHSRS-AIVGEVRERL 1186


>gi|271964325|ref|YP_003338521.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270507500|gb|ACZ85778.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
          Length = 418

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE++    I+EG ++  IAV L I++ TV+ ++ +I+ K    +R+   A+   N+
Sbjct: 355 LSARELQVAELITEGLSNPMIAVRLDIAKRTVDAHVRNILAKGGLASRTQVAAWVAEND 413


>gi|297197233|ref|ZP_06914630.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717281|gb|EDY61315.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G   EL+ RE + L  ++ G  + EIA  LG+S  T   +++ IM K   + R+  +  
Sbjct: 152 LGGPSELSERERQVLALVARGLNNAEIADALGLSPLTAKTHVSRIMGKLGARDRAQLVIV 211

Query: 240 AVRNNIV 246
           A  + +V
Sbjct: 212 AYESGLV 218


>gi|134101944|ref|YP_001107605.1| hypothetical protein SACE_5446 [Saccharopolyspora erythraea NRRL
            2338]
 gi|133914567|emb|CAM04680.1| hypothetical protein SACE_5446 [Saccharopolyspora erythraea NRRL
            2338]
          Length = 1184

 Score = 35.8 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+  E+     ++EG+++ EIA +L + R  +   +ASI+ K    +RS AI   VR  +
Sbjct: 1122 LSPEEIRIAALVAEGRSNPEIAALLALPRRVIQGRVASILGKLNAHSRS-AIVGEVRERL 1180


>gi|170728356|ref|YP_001762382.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC
           51908]
 gi|169813703|gb|ACA88287.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Shewanella woodyi ATCC 51908]
          Length = 896

 Score = 35.8 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + L+ RE +    +S+G T+ +I+  LGIS NTV  ++ ++ +K     R  A+
Sbjct: 836 WHLSSREQQICPLLSQGFTNKQISTTLGISENTVKFHLKNLFQKLGVINRQQAV 889


>gi|86750181|ref|YP_486677.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86573209|gb|ABD07766.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 217

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L  ++ + L  + +G T+ EIA  LGIS  T   ++++I+ K     R+ A   AVR
Sbjct: 149 EITLGSQQKKVLALLVKGFTNSEIAERLGISLPTARYHVSAILVKLGASNRAEAAGLAVR 208

Query: 243 NNIV 246
            NIV
Sbjct: 209 LNIV 212


>gi|54024864|ref|YP_119106.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016372|dbj|BAD57742.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 215

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 37/77 (48%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA  A +    +   G    LT +E   L  + EG T+ +IA  + ++  TV NY++ ++
Sbjct: 131 AALMAKLRAEAEADTGPLAALTEQERTLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLL 190

Query: 226 RKTATKTRSGAIAYAVR 242
            K   + R+ A   A +
Sbjct: 191 TKLGVERRTQAAVLAAK 207


>gi|289675728|ref|ZP_06496618.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
          Length = 260

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 189 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245


>gi|260774008|ref|ZP_05882923.1| two component transcriptional regulator LuxR family [Vibrio
           metschnikovii CIP 69.14]
 gi|260610969|gb|EEX36173.1| two component transcriptional regulator LuxR family [Vibrio
           metschnikovii CIP 69.14]
          Length = 202

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+    ++  G +++EIA  + IS  TV+ Y   IM K   K     I+ A RNN+
Sbjct: 143 LSAREIVVFNYLVSGLSNNEIAEKMLISNKTVSTYKKRIMDKLNAKNIVDLISIAKRNNV 202


>gi|240171514|ref|ZP_04750173.1| two-component transcriptional regulatory protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 218

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A R
Sbjct: 150 LTEQERTLLGHLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASR 206


>gi|269125868|ref|YP_003299238.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310826|gb|ACY97200.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 201

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L   ++G    +IA  +G+S  TV NY+++ + K     R  A+  A
Sbjct: 141 LTPRELDALRAAADGSPISKIARSMGLSEGTVRNYLSAAVTKLGADNRHAAVRAA 195


>gi|218258047|ref|ZP_03474480.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225811|gb|EEC98461.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii
           DSM 18315]
          Length = 202

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N +
Sbjct: 135 LSSREKEIVVCVVKGMTNREIADRLYLSTHTVITHRRNIARKLQVHSASGLTVYAIVNKL 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|223934694|ref|ZP_03626614.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896649|gb|EEF63090.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 229

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    I EG ++ EIA  + +S  TV  +  +I  K   KT +  I Y VR
Sbjct: 163 LTDREFEVFRLIGEGLSTKEIAANMHVSAKTVEVHRMNIKTKLGLKTAAELIRYTVR 219


>gi|188584049|ref|YP_001927494.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347547|gb|ACB82959.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 263

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REV  L  ++ G+++  IA  L I+  TV  ++ +I+RK   K R+ A  +A+   I
Sbjct: 163 LSSREVNILEGLALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKGI 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|206969319|ref|ZP_03230274.1| Two-component protein Kinase [Bacillus cereus AH1134]
 gi|206736360|gb|EDZ53518.1| Two-component protein Kinase [Bacillus cereus AH1134]
          Length = 595

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K     +  A+  A+  
Sbjct: 532 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALEI 591

Query: 244 NIV 246
            I+
Sbjct: 592 GII 594


>gi|111222400|ref|YP_713194.1| putative sensory transduction protein [Frankia alni ACN14a]
 gi|111149932|emb|CAJ61626.1| Hypothetical sensory transduction protein [Frankia alni ACN14a]
          Length = 232

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L  ++ G ++ EIA  L +S  TV  ++  I+ K   + R  A+ +A    +
Sbjct: 159 LTDRELVVLGEVAAGHSNAEIAAHLVLSEATVKTHVGRILAKLELRDRVQAVVFAYETGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|56476749|ref|YP_158338.1| two-component response regulator [Aromatoleum aromaticum EbN1]
 gi|56312792|emb|CAI07437.1| Two-component response regulator [Aromatoleum aromaticum EbN1]
          Length = 206

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    L+ RE++ L  +  GKT  EI+V L +S  TV+ +   +MRK      +  I Y
Sbjct: 142 GPQEPLSEREIQVLRMLQLGKTVTEISVELSLSPKTVSTHKVHLMRKLGIANNADLIRY 200


>gi|291295457|ref|YP_003506855.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470416|gb|ADD27835.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 209

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +++G ++ EIA  L IS  TV  ++     K     R+ A+  A+   I
Sbjct: 145 LSVRELEVLALVAKGFSNKEIARELKISEATVKTHLLHTFEKLGVDDRTAAVTVAIERGI 204

Query: 246 V 246
           +
Sbjct: 205 L 205


>gi|167615608|ref|ZP_02384243.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257142156|ref|ZP_05590418.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 214

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT RE + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R
Sbjct: 146 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYR 203


>gi|312960767|ref|ZP_07775272.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284425|gb|EFQ63001.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 206

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A +F+  DV  GK   LT R+ E    I++GKT+ EIA  L IS  TV  +++S++R   
Sbjct: 134 APLFEGNDV-MGK---LTSRQREVWRLIAQGKTNKEIAAELEISPYTVRIHVSSLIRVLN 189

Query: 230 TKTRSGAIA 238
              R+ A A
Sbjct: 190 VPNRAVAAA 198


>gi|266631096|emb|CBH32096.1| putative two-component response regulator [Streptomyces albaduncus]
          Length = 201

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L   + G+    IA  L +S  TV NY+ ++  K   +TR  A+  A
Sbjct: 141 LTDRELEVLRLTATGEAVPAIATRLHLSPGTVRNYLTTVESKLNARTRVDAVRIA 195


>gi|261338216|ref|ZP_05966100.1| two-component system response regulator [Bifidobacterium gallicum
           DSM 20093]
 gi|270276862|gb|EFA22716.1| two-component system response regulator [Bifidobacterium gallicum
           DSM 20093]
          Length = 230

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +L+A+Q       D     D EL   + RE E +  I+ G T  E+A  L IS  TV  +
Sbjct: 145 VLSAFQGAPAAGADNDVNADEELDRLSSREQEVMRLIARGYTYREVAAELFISVKTVETH 204

Query: 221 IASIMRKTATKTRS 234
           +++++RK     RS
Sbjct: 205 MSAVLRKLQLSNRS 218


>gi|254445229|ref|ZP_05058705.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198259537|gb|EDY83845.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 225

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE + L  ++E  ++ EIA  L IS  TV+N+  +IMRK      +    YA++
Sbjct: 159 EIPLSDREKQILQLVAESFSTKEIASRLNISVRTVDNHRTNIMRKLNLHDVAALTRYAIK 218

Query: 243 NNIV 246
           + ++
Sbjct: 219 HELI 222


>gi|329901490|ref|ZP_08272828.1| two component transcriptional regulator, LuxR family
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549098|gb|EGF33698.1| two component transcriptional regulator, LuxR family
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 210

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    +S+G+   +IA  L +S  TV+ Y A +++K    + +  I YA++ N+
Sbjct: 149 LSAREYEIFYKLSQGEGVTKIADELCLSVKTVSTYRARVLQKMNMTSNADIIYYAIKQNL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|238060903|ref|ZP_04605612.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237882714|gb|EEP71542.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 223

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 181 GKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G+D +   LT RE E L  +++G +  +IA  LG+S  TV N++ + + K     R    
Sbjct: 154 GRDTDAPRLTDRETEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELT 213

Query: 238 AYAVRNNI 245
            YA+   +
Sbjct: 214 RYAIERGL 221


>gi|66047603|ref|YP_237444.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258310|gb|AAY39406.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
          Length = 265

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 194 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 250


>gi|52143628|ref|YP_083200.1| response regulator [Bacillus cereus E33L]
 gi|51977097|gb|AAU18647.1| response regulator [Bacillus cereus E33L]
          Length = 212

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           +L   + N+  S +     D  L T RE+  +  I++G ++ EI+  L IS  T+ NYI 
Sbjct: 129 VLDKIKCNLMGSKEDECKIDTSLFTERELSIIALIAKGFSNKEISKQLFISEGTIANYIT 188

Query: 223 SIMRKTATKTRSGAIAY 239
           S++ KT  + R+    Y
Sbjct: 189 SVLGKTGLEHRTQIAIY 205


>gi|116620874|ref|YP_823030.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224036|gb|ABJ82745.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 247

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  +++G  + E+A  + IS  TV N++ +I  K     R     YA+ NN+
Sbjct: 184 LSQREREIVALVAQGFKNKEMAEKMFISEQTVKNHLHNIFDKLGVSDRLELALYAIHNNL 243


>gi|330974043|gb|EGH74109.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 257

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LTGRE+E L     G ++ EIA  L +S  TV  +  +   K   K++S   AY  ++ 
Sbjct: 196 QLTGREIEVLKLALSGFSNSEIAGKLSVSPETVKVHRRNFYAKLNIKSQSELFAYFFQST 255

Query: 245 I 245
           I
Sbjct: 256 I 256


>gi|329924693|ref|ZP_08279708.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
 gi|328940527|gb|EGG36849.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
          Length = 220

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            T RE++ +  I++G  + EI+  L IS  T+ N+I S++ KT  + R+
Sbjct: 159 FTERELDIMALIAKGLANKEISKKLFISEGTIANHITSVLSKTGLEHRT 207


>gi|54025695|ref|YP_119937.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017203|dbj|BAD58573.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 231

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +  G ++ EIA  L ++  TV  +++SI+R T  + R  A   AV  +
Sbjct: 160 LTPREQEILRLVGRGWSNAEIAAELHLAPGTVKVHVSSILRTTGARNRVEAALVAVHAD 218


>gi|302185174|ref|ZP_07261847.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
          Length = 260

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 189 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245


>gi|268679430|ref|YP_003303861.1| regulatory protein LuxR [Sulfurospirillum deleyianum DSM 6946]
 gi|268617461|gb|ACZ11826.1| regulatory protein LuxR [Sulfurospirillum deleyianum DSM 6946]
          Length = 202

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS  V+     +L+ +E E  + I EG ++ EIA+  GI+  TV  ++ SI  KT  K R
Sbjct: 136 KSLHVNQNLLEKLSCKEKEIASLIKEGLSNKEIALREGITERTVKAHLTSIYEKTGLKDR 195


>gi|308235093|ref|ZP_07665830.1| transcriptional regulator, LuxR family protein [Gardnerella
           vaginalis ATCC 14018]
 gi|311115228|ref|YP_003986449.1| hypothetical protein HMPREF0421_21344 [Gardnerella vaginalis ATCC
           14019]
 gi|310946722|gb|ADP39426.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 246

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244
           L  +E++ +  +++G T+++IA  LG+  NT+N +I  I +K     R  AI A+A   N
Sbjct: 159 LPPQELKIMDLLAKGYTTNQIASQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218


>gi|145588917|ref|YP_001155514.1| response regulator receiver protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047323|gb|ABP33950.1| two component transcriptional regulator, LuxR family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 215

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +LTGRE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T
Sbjct: 153 KLTGRERQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNT 200


>gi|322374953|ref|ZP_08049467.1| DNA-binding response regulator [Streptococcus sp. C300]
 gi|321280453|gb|EFX57492.1| DNA-binding response regulator [Streptococcus sp. C300]
          Length = 199

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193


>gi|294677045|ref|YP_003577660.1| LuxR family two component transcriptional regulator [Rhodobacter
           capsulatus SB 1003]
 gi|294475865|gb|ADE85253.1| two component transcriptional regulator, LuxR family [Rhodobacter
           capsulatus SB 1003]
          Length = 206

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I  G+T+ EIA  + +   TV  ++ ++ RK   + R+ A   A  N 
Sbjct: 146 LTARETEVLRGICAGRTNKEIAREMDLQEVTVKLHVRTLTRKIGARNRTHAAMIARENG 204


>gi|188993657|ref|YP_001905667.1| Two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735417|emb|CAP53632.1| Two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 274

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 201 DLTPQQFRVLQMLGVGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 256


>gi|170783491|ref|YP_001741984.1| putative DNA binding response regulator [Arthrobacter sp. AK-1]
 gi|150034978|gb|ABR66989.1| putative DNA binding response regulator [Arthrobacter sp. AK-1]
          Length = 212

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE+E L   ++G +  +IA  L IS  TV  ++  I  K     R+ A+A A+R  
Sbjct: 151 LSPREIEILRLAADGYSGQKIASELHISLATVKTHLQHIYDKLDVSDRASAVAQAIRRG 209


>gi|159900854|ref|YP_001547101.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893893|gb|ABX06973.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 343

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT R+ E L  + +G  +  IA  +G+S  TV N++  + R+   ++R  A+ YA ++
Sbjct: 150 LTPRQRELLWCLQQGDDNHAIARRIGLSVKTVENHLTRLYRQIGVQSRLEAVHYAAQH 207


>gi|292490863|ref|YP_003526302.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291579458|gb|ADE13915.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 213

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE + +  I +GK +  +A+ LGIS  TV  + A +M K   K  +  I  A
Sbjct: 145 QLTSRERQVMELIVKGKPNKVVAIELGISTKTVEIHRARVMEKLEAKNLADLIHLA 200


>gi|271966129|ref|YP_003340325.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509304|gb|ACZ87582.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  I+ G  + E+A  L IS  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 152 RELEVLRLIARGAANKEVARALLISETTVKTHLKHVFAKLGVDNRAAAVVVAMEQRLI 209


>gi|254516346|ref|ZP_05128405.1| transcriptional regulator [gamma proteobacterium NOR5-3]
 gi|219674769|gb|EED31136.1| transcriptional regulator [gamma proteobacterium NOR5-3]
          Length = 925

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++   + +I   L IS +TV +++  + +K     R  AIA A R  
Sbjct: 857 DLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKATRTG 916

Query: 245 IV 246
           ++
Sbjct: 917 LL 918


>gi|168700566|ref|ZP_02732843.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 216

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 31/65 (47%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G   +L+ RE E +  I+ G ++ EIA  L +S  TV  Y    M K   +TR   + Y
Sbjct: 147 GGTGADLSERETEVVRLIALGYSNKEIAGRLKLSVKTVETYKTRSMEKLGVRTRVDIVQY 206

Query: 240 AVRNN 244
           A R  
Sbjct: 207 AARRG 211


>gi|154684718|ref|YP_001419879.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350569|gb|ABS72648.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 214

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE++    I EGK++  IA  L ++  TV NY++ I+ K     R+    Y
Sbjct: 156 LTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVSNRTELTLY 209


>gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281541|gb|ABR89951.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 210

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    + +G    +IA  L +S  TV+ Y A +++K   +  +G I YA++ N+
Sbjct: 149 LSKREYEIFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNMENNAGIIYYAIKQNL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|111222013|ref|YP_712807.1| putative two-compnent system regulatory protein [Frankia alni
           ACN14a]
 gi|111149545|emb|CAJ61238.1| putative Two-compnent system regulatory protein ( two-component
           system response regulator) [Frankia alni ACN14a]
          Length = 240

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E +  ++E  T+ +IA  LGI+ +TV  ++++I+ K    +R  A+  A
Sbjct: 157 LSKREMEVIEIVAEAATNMQIARRLGITEDTVKRHVSNILMKLGAVSRLDAVKKA 211


>gi|83716526|ref|YP_439048.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83650351|gb|ABC34415.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 223

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT RE + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R
Sbjct: 155 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYR 212


>gi|46581079|ref|YP_011887.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450500|gb|AAS97147.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 227

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L +++EG  + EIA +L +S  TV  + A+ M K    + +   A+A R  +
Sbjct: 156 LTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRAFAQRQGL 215


>gi|17549201|ref|NP_522541.1| nitrate/nitrite response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431453|emb|CAD18131.1| probable nitrate/nitrite response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 222

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G+++ EIA  L ++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 160 LTPREREIVRGLARGESNKEIARALDVAESTVKIHVQNILKKLNLTSRVQVAVYAVEHGL 219


>gi|13475730|ref|NP_107297.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14026486|dbj|BAB53083.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 162

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE++    IS+GK   EIA  LGIS  TV  +I  I  K     RS AIA  V
Sbjct: 96  LTRRELQIALLISDGKVDKEIARQLGISGYTVREHIRRIFAKLNIGRRS-AIASCV 150


>gi|317489643|ref|ZP_07948147.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911237|gb|EFV32842.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 509

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           FELT RE E L +++ G+++  IA  L IS NTV  +I  +  KT   ++
Sbjct: 443 FELTPREREILGYLARGRSARFIAETLIISENTVWAHIKRVYAKTGVHSK 492


>gi|315612509|ref|ZP_07887422.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315315490|gb|EFU63529.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 199

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193


>gi|300786429|ref|YP_003766720.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795943|gb|ADJ46318.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 202

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L     G T  EIA  L +S  TV NY+++ + KT  + R  A+  A
Sbjct: 142 LTARERDVLITARSGATIAEIASRLYLSEGTVRNYVSAAIAKTGARNRVEAVRMA 196


>gi|288916240|ref|ZP_06410620.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288352431|gb|EFC86628.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 189

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + LT ++ G ++ EIA  L ++ +T+  ++ +++ KT+++ R+  + +A  + +
Sbjct: 128 LTDRERDVLTRVARGMSNAEIAADLVLATSTIKTHMTNLLAKTSSRDRTQLVIFAYESGL 187

Query: 246 V 246
            
Sbjct: 188 T 188


>gi|302549920|ref|ZP_07302262.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467538|gb|EFL30631.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G ++ EIA  L +   TV +++++++ K   + R+ A+  A  + 
Sbjct: 156 QLTEREAEVLRLMARGLSNAEIAGRLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215

Query: 245 IV 246
            V
Sbjct: 216 FV 217


>gi|228970024|ref|ZP_04130734.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228789688|gb|EEM37560.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 86

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+  
Sbjct: 23  YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEI 82

Query: 244 NIV 246
            I+
Sbjct: 83  GII 85


>gi|218778430|ref|YP_002429748.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759814|gb|ACL02280.1| two component transcriptional regulator, LuxR family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 557

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++L+ RE + +  I+EGKT  EIA  L +S  T+  Y   +  K   +T +  + Y V  
Sbjct: 495 YKLSDRERQVMFMIAEGKTMKEIASELRLSYKTIATYRTRVFEKMHMRTDAQIVRYVVSK 554

Query: 244 NIV 246
            ++
Sbjct: 555 GLL 557


>gi|284993288|ref|YP_003411843.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066534|gb|ADB77472.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 222

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +LT RE E LT ++ G +++ I   L IS  T   ++ ++MRK A   R+ A+
Sbjct: 161 DLTAREREVLTLLARGLSNEAIGRELYISATTAKFHVGNVMRKMAVSRRAEAV 213


>gi|89893086|ref|YP_516573.1| hypothetical protein DSY0340 [Desulfitobacterium hafniense Y51]
 gi|89332534|dbj|BAE82129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 234

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   L+ ++ G ++ EIA  L +S  TV +Y + I  K   KTR   + YA++  
Sbjct: 170 DLTVREQNFLSLMAMGYSNKEIAEELSVSVKTVESYRSKIKDKLNLKTRHELVRYALKKG 229

Query: 245 IV 246
           ++
Sbjct: 230 LM 231


>gi|332668949|ref|YP_004451957.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332337987|gb|AEE44570.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 226

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE++ L  ++EG ++ EIA  L +S  TV  ++ ++  K   + R  A+  A
Sbjct: 160 LTPRELDVLRLVAEGASNVEIAAELVVSEATVKTHVGNVFAKLGARDRVQAVIIA 214


>gi|332666745|ref|YP_004449533.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335559|gb|AEE52660.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 217

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +   + G  + EIA  L +S +TV  +  +IM+K    + S  + YAV   +
Sbjct: 153 LSSREIEIVQLSARGLIAKEIADTLNLSTHTVYTHRKNIMKKLQINSSSELVLYAVSKGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|300023398|ref|YP_003756009.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525219|gb|ADJ23688.1| transcriptional regulator, LuxR family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 241

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   +SY+ H   D  L+ R+ E L  ++ GK++ EI+  L  S NTV  ++ ++++K  
Sbjct: 159 AEPQRSYEAHPDID-SLSPRQREVLLLVAVGKSNLEISEELSCSLNTVKRHVTAVLQKLH 217

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A   A + N++
Sbjct: 218 LPNRTRAANLANQLNLL 234


>gi|229070683|ref|ZP_04203919.1| Two-component protein Kinase [Bacillus cereus F65185]
 gi|228712450|gb|EEL64389.1| Two-component protein Kinase [Bacillus cereus F65185]
          Length = 581

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K     +  A+  A+  
Sbjct: 518 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALEI 577

Query: 244 NIV 246
            I+
Sbjct: 578 GII 580


>gi|227523758|ref|ZP_03953807.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227089073|gb|EEI24385.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 209

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ +E+  L   ++G T+ EIA  L +S  TV NY+++I  K     R  A+  A  
Sbjct: 146 DNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKN 205

Query: 243 N 243
           N
Sbjct: 206 N 206


>gi|222083272|ref|YP_002542675.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221738652|gb|ACM39490.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 234

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ G T +EIA + GI  N+V   +   M++   ++++   A A+R  +
Sbjct: 174 LDPKEATYLRWIAVGMTMEEIADVEGIKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|331698643|ref|YP_004334882.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953332|gb|AEA27029.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 225

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E++ L  ++ G ++ EI   L IS NT   ++ +++RK   K R G +A+
Sbjct: 147 LTDKEIDVLALVAAGLSNQEIGETLLISENTAKFHVGNVIRKFGAK-RRGELAH 199


>gi|320532198|ref|ZP_08033064.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135576|gb|EFW27658.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 245

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +S+G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    +
Sbjct: 184 LTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLTKLDVRDRVQAVVVAYETGL 243

Query: 246 V 246
           +
Sbjct: 244 M 244


>gi|227508573|ref|ZP_03938622.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191905|gb|EEI71972.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 209

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ +E+  L   ++G T+ EIA  L +S  TV NY+++I  K     R  A+  A  
Sbjct: 146 DNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKN 205

Query: 243 N 243
           N
Sbjct: 206 N 206


>gi|261409922|ref|YP_003246163.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261286385|gb|ACX68356.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 217

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            T RE++ +  I++G  + EI+  L IS  T+ N+I S++ KT  + R+
Sbjct: 156 FTERELDIMALIAKGLANKEISKKLFISEGTIANHITSVLSKTGLEHRT 204


>gi|302521740|ref|ZP_07274082.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|318058407|ref|ZP_07977130.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|302430635|gb|EFL02451.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 206

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   + G  + E+A  L +S+ TV NY+++ ++K A + R+ A+  A
Sbjct: 146 LTTREAEVLRAAAGGAGNAELATALHLSQGTVRNYLSTAIQKLAARNRADAVRIA 200


>gi|160934711|ref|ZP_02082097.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753]
 gi|156866164|gb|EDO59536.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753]
          Length = 212

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 183 DFELTG---REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           DF   G   RE++ ++ +++G ++ EIA  L +S  TV NY+++++ K   + R+
Sbjct: 144 DFAARGVSPRELDVISLVAKGLSNKEIAEALFLSEGTVRNYLSAVLDKLELRDRT 198


>gi|297189985|ref|ZP_06907383.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718642|gb|EDY62550.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 380

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E +  ++ G T+  IA  L ++ +T   ++A I+RK   + R+ A+   +R
Sbjct: 319 LSRREIEVMELLAGGATNRVIAARLVVAESTAKAHVAQILRKLEARNRAEAVTKYLR 375


>gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 212

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 15/68 (22%), Positives = 39/68 (57%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +    + ELT  E++ +  +++G  + EIA  L +S+ T+ +++++++ KT+   R+   
Sbjct: 144 IQVPSNVELTPTELKVIQLVAQGMANREIAEKLNVSQRTIESHVSNMLNKTSLHNRTELA 203

Query: 238 AYAVRNNI 245
            +A+   +
Sbjct: 204 RWAIETKM 211


>gi|171912243|ref|ZP_02927713.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 224

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE+E   W+S G  +  IA  LG+   T+  + A+IM +    T    + +AV
Sbjct: 160 LTDREMEVFQWLSRGYGTKRIAERLGLGIKTIETHRANIMARLDLHTAEELVNFAV 215


>gi|120613018|ref|YP_972696.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|326319058|ref|YP_004236730.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|120591482|gb|ABM34922.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
 gi|323375894|gb|ADX48163.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 209

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I+ GK   +IA  L +S  TV+ Y + ++ K      +    YA+RN +
Sbjct: 149 LSERELQTLVKIASGKRLSDIAEELMLSPKTVSVYRSRVLEKLKLSNNAELTVYAIRNQL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|84619202|emb|CAJ42326.1| transcriptional regulator [Streptomyces steffisburgensis]
          Length = 196

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTGRE++ L   + G    +IA  L +   TV NY+ +I+ K   + R  A+  A
Sbjct: 136 LTGRELDVLRLFASGLGPGDIARFLSLQVGTVRNYLTTIVSKLGARNRVDALRIA 190


>gi|229588696|ref|YP_002870815.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360562|emb|CAY47419.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 210

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ G+T+ EIA  + +S  TV+ Y   ++ K   ++    I  A RN +
Sbjct: 150 LSGREMMVLQQLARGRTNKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|183983463|ref|YP_001851754.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
 gi|183176789|gb|ACC41899.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
          Length = 217

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A R
Sbjct: 150 LTEQERTLLGHLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASR 206


>gi|229820223|ref|YP_002881749.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566136|gb|ACQ79987.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 224

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++A + +   +  D H   D +LT RE E ++ +++G +++EI   L +S  T   +++ 
Sbjct: 143 VIAEFTSRSPRPLDPHPHID-QLTNREHEVVSLVAQGLSNEEIGKRLYVSPATARTHVSH 201

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
            M K + + R+  + +A ++ +
Sbjct: 202 AMLKLSARDRAQLVVFAFQSGL 223


>gi|157850153|gb|ABV89902.1| acyl-homoserine lactone receptor [Burkholderia vietnamiensis]
          Length = 141

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 20/31 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNT 216
           LT RE E L W +EGKT+ EI  IL IS  T
Sbjct: 111 LTAREREVLCWTAEGKTACEIGQILSISERT 141


>gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 226

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 167 AYQANMFKSYDVHWGK--------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           A Q    ++  V  GK          +LT RE   L  + +G  + EIA  L  S   + 
Sbjct: 138 AQQIAELRAMLVQQGKRHPTAPPIQLDLTPREASVLQLVVKGLMNKEIASQLNTSVRNIE 197

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            Y++ +  KT T +R+  + +A+ + +
Sbjct: 198 KYVSRLFVKTGTSSRTELVRFALEHGL 224


>gi|325830056|ref|ZP_08163513.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|325487523|gb|EGC89961.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 486

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           FELT RE E L +++ G+++  IA  L IS NTV  +I  +  KT   ++
Sbjct: 420 FELTPREREILGYLARGRSARFIAETLIISENTVWAHIKRVYAKTGVHSK 469


>gi|297202549|ref|ZP_06919946.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|297148137|gb|EFH28852.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 910

 Score = 35.8 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LTGRE + L  ++ G+T+ +IA  L IS  T + ++++I+ K     R  A A A 
Sbjct: 835 RSLGLTGRERDVLRLVTLGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAH 894

Query: 242 R 242
           R
Sbjct: 895 R 895


>gi|312200532|ref|YP_004020593.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231868|gb|ADP84723.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 214

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  ++ G T+  IA  L +S  TV N+++++  K     R+ A+A A
Sbjct: 149 ELTDREREILDLVARGLTNPAIARRLFLSDKTVRNHVSNVFAKLQVADRAEAVARA 204


>gi|270293402|ref|ZP_06199611.1| DNA-binding response regulator [Streptococcus sp. M143]
 gi|270278251|gb|EFA24099.1| DNA-binding response regulator [Streptococcus sp. M143]
          Length = 199

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193


>gi|300781785|ref|ZP_07091639.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533492|gb|EFK54553.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 199

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT REVE       G    +IA  L +S  TV N+I++IM KT    R  A
Sbjct: 139 LTAREVEVAREALTGAEIKQIAARLNLSTGTVRNHISAIMTKTGAPNRYAA 189


>gi|255039459|ref|YP_003090080.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254952215|gb|ACT96915.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 212

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE + L  +  G T  EIA  L +S +TV  Y  S+M K   +  +  I YA+++
Sbjct: 145 LHLSPREKQVLRKVCSGHTIKEIAYELKLSTHTVQYYHRSVMDKLKVRRTTDLIVYAMQH 204

Query: 244 NI 245
            +
Sbjct: 205 GL 206


>gi|256379380|ref|YP_003103040.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923683|gb|ACU39194.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           ELT RE E L  ++ G+ +  IA  L +S  TV N++++I+RK
Sbjct: 155 ELTSREREVLRLMAGGEGNGAIARGLVLSPKTVRNHVSNILRK 197


>gi|159901582|ref|YP_001547828.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894621|gb|ABX07700.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 209

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ++F+L  RE+  L  +S+G  + +IA  L I   TV NYI ++ +K     RS
Sbjct: 144 QEFQLAPREIHILEHLSQGLGTIDIANELNIDGRTVQNYITNLRKKLNCLERS 196


>gi|161523112|ref|YP_001586041.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348066|ref|YP_001941262.1| hypothetical protein BMULJ_05437 [Burkholderia multivorans ATCC
           17616]
 gi|160346665|gb|ABX19749.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338204|dbj|BAG47272.1| hypothetical protein BMULJ_05437 [Burkholderia multivorans ATCC
           17616]
          Length = 381

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F+LT RE      +S G    E A  LGI   T   Y+  I+ KT T  ++  ++  VR
Sbjct: 316 FDLTPREAALAALLSGGLDLGEAAARLGIGIGTARGYLKQILAKTGTHRQAELVSLVVR 374


>gi|158315625|ref|YP_001508133.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111030|gb|ABW13227.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 217

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE + L  ++ G+ +  IA +L +S  TV N++++I  K     R+ AI  A
Sbjct: 151 QLTDRERQVLDELARGRNNASIARVLNVSTRTVANHVSTIFAKLQLADRAEAIVRA 206


>gi|330953036|gb|EGH53296.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 260

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 189 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245


>gi|302545100|ref|ZP_07297442.1| epstein-Barr nuclear antigen 1 [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462718|gb|EFL25811.1| epstein-Barr nuclear antigen 1 [Streptomyces himastatinicus ATCC
           53653]
          Length = 377

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E LT ++EG   D  A  LG+S  T   Y+A IMR    ++R  A   AVR  ++
Sbjct: 318 EVLTLMAEGYKDDAAARKLGLSVRTYRRYVADIMRDLNVESRFQAGVRAVRAGLM 372


>gi|322433940|ref|YP_004216152.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161667|gb|ADW67372.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 190

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L    EG++S EIA  L +S  TV NY++  + K     R
Sbjct: 130 LTDRERQILQRAGEGRSSGEIAGELRLSEGTVRNYLSEAISKLGAANR 177


>gi|320010324|gb|ADW05174.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 230

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT REVE L  ++EG+ +  IA  +GI+ +T   ++  ++ K    +R
Sbjct: 156 LTPREVEVLVRVAEGEDTRLIAAGMGIAPSTARTHVQRVLMKLGVGSR 203


>gi|256786258|ref|ZP_05524689.1| response regulatory protein [Streptomyces lividans TK24]
 gi|289770149|ref|ZP_06529527.1| response regulatory protein [Streptomyces lividans TK24]
 gi|289700348|gb|EFD67777.1| response regulatory protein [Streptomyces lividans TK24]
          Length = 223

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  ++ G  + EIA  L IS  TV  ++  I  K    TR+GA+A A
Sbjct: 162 LTDRERDILAQLATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVA 216


>gi|222106363|ref|YP_002547154.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737542|gb|ACM38438.1| two component response regulator [Agrobacterium vitis S4]
          Length = 896

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G   ELT RE + L  +  G ++ EIA  L I+ NTV ++  +I  K   K+R+ A+
Sbjct: 835 GSLTELTQREDDVLQLMRWGLSNSEIATRLDINLNTVKSHAKNIFAKLGVKSRTQAV 891


>gi|171315760|ref|ZP_02904992.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia ambifaria MEX-5]
 gi|171099059|gb|EDT43839.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia ambifaria MEX-5]
          Length = 891

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+  L  ++EG ++  IA  L +S +TV  ++ +I  K    +R+ A+A + R  +
Sbjct: 830 LTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRTHLRNINNKVGAHSRTQAVAISRRLGV 889

Query: 246 V 246
           +
Sbjct: 890 I 890


>gi|91776067|ref|YP_545823.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91710054|gb|ABE49982.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 213

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    +++GKT++EIA IL +S  TV  ++ +I +K      +     A+R+ +
Sbjct: 151 LSDREFEVFMALAKGKTTNEIADILSLSPRTVGTHLYNIKQKLNASNSAEIALIAMRSGL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|326385152|ref|ZP_08206820.1| two-component transcriptional regulatory protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196117|gb|EGD53323.1| two-component transcriptional regulatory protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 217

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 37/77 (48%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A     + K  +   G   + T +E   L  + EG T+ +IA  + ++  TV NY++ ++
Sbjct: 132 AVLMERLRKQQEQDAGPLADFTQQERTLLALLGEGLTNRQIADRMHLAEKTVKNYVSRLL 191

Query: 226 RKTATKTRSGAIAYAVR 242
            K   + R+ A  +A R
Sbjct: 192 TKLGMERRTQAAVFATR 208


>gi|293364262|ref|ZP_06610988.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307702507|ref|ZP_07639461.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|291317108|gb|EFE57535.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623919|gb|EFO02902.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
          Length = 199

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193


>gi|172039771|ref|YP_001799485.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171851075|emb|CAQ04051.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 248

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ELT RE E L  ++ G T  E+A  L IS  TV  ++++I+RKT    R
Sbjct: 188 ELTPREHEVLRLLARGYTYKEMAERLFISVKTVETHVSNILRKTQQTNR 236


>gi|295132306|ref|YP_003582982.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980321|gb|ADF50786.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 205

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT R++E L  + +GKT+ +IA  L I + TV  +  +++RK         + YA++
Sbjct: 144 LTKRQIEILKLVGKGKTNQQIADALFIGKTTVETHRKNMIRKLGLHGPGELLRYALQ 200


>gi|21224518|ref|NP_630297.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|4455739|emb|CAB36602.1| putative response regulator [Streptomyces coelicolor A3(2)]
          Length = 279

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  REV+ L  ++ G T+   A  LG+   TV +Y+ S MRK   +TR+ A+A A R  
Sbjct: 218 LAPREVDVLACVAAGATNGAAAERLGVGPETVKSYLRSAMRKLGARTRTEAVAAARRTG 276


>gi|326382928|ref|ZP_08204618.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198518|gb|EGD55702.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 217

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LTG+E E  T I +G T+ +IA  + ++  T+ NY++ I+ K   + R+
Sbjct: 155 LTGQEREVFTLIGQGMTNRQIADRMFLAEKTIKNYVSRILSKLDMQRRT 203


>gi|325271130|ref|ZP_08137690.1| response regulator [Pseudomonas sp. TJI-51]
 gi|324103735|gb|EGC01022.1| response regulator [Pseudomonas sp. TJI-51]
          Length = 241

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT REV  +  ++ G +  EIA ++GI   TV  ++ + M KT    R+
Sbjct: 184 LTRREVSVIEHVAAGCSDKEIARLMGIGFTTVRTHLKNAMHKTGASNRT 232


>gi|307326345|ref|ZP_07605541.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888008|gb|EFN18998.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 228

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTGRE++    ++ G+T+ EI   L +S +TV  ++++I  K A + R    A+A
Sbjct: 165 LTGRELDVARLVAVGRTNQEICAELHLSLSTVKTHLSNIQTKLAVRNRVEIAAWA 219


>gi|295395258|ref|ZP_06805465.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971893|gb|EFG47761.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 226

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  I+ G+T+ EI   L ++  T+  +I ++  KT  + R   + +A+R  
Sbjct: 162 ELTPRERDILALIARGRTNQEICDELWLTMPTIKTHIGNLRAKTQARDRVQLVLFALRVG 221

Query: 245 IV 246
           I 
Sbjct: 222 IA 223


>gi|297563788|ref|YP_003682761.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848237|gb|ADH70255.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 232

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE++ +  ++ G T+ E+A  L ++ +TV  ++AS+  K   + R    A+A R
Sbjct: 168 DGGLTVRELDIVRAVARGLTNTEVAGELFVTVSTVKTHLASVQAKLGARNRVEVAAWAYR 227

Query: 243 NN 244
           N 
Sbjct: 228 NG 229


>gi|223937686|ref|ZP_03629588.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893658|gb|EEF60117.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 454

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +S+G    EIA  LGIS  TV+N++ +   K    TR+ A
Sbjct: 397 LTDRELKVLNCVSKGYLDKEIAHELGISLWTVHNHLKNTYEKLNVHTRTEA 447


>gi|126661059|ref|ZP_01732143.1| hypothetical transcriptional regulator [Cyanothece sp. CCY0110]
 gi|126617670|gb|EAZ88455.1| hypothetical transcriptional regulator [Cyanothece sp. CCY0110]
          Length = 108

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +   LT RE E L W+S G +  E+A  + IS NT+ NY   +  K      S  ++
Sbjct: 29  QQIRLTRREQELLEWLSLGYSYQEMAEGINISVNTIKNYFLRLREKFNAHNNSHLLS 85


>gi|328883008|emb|CCA56247.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 227

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT REVE L  ++EG+ +  IA  +GI+ +T   ++  ++ K    +R
Sbjct: 156 LTQREVEVLVRVAEGEDTRLIAAGMGIAPSTARTHVQRVLMKLGVGSR 203


>gi|330469956|ref|YP_004407699.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328812927|gb|AEB47099.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 218

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G +  +IA  LG+S  TV N++ + + K     R     YA+   +
Sbjct: 157 LTERETEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTRYAIERGL 216


>gi|238059115|ref|ZP_04603824.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237880926|gb|EEP69754.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 220

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT REVE +  +++G +++EIA  L IS  T   +++ I+ K   + R+  + +A
Sbjct: 154 LTNREVEIMDLVAQGLSNEEIAGRLEISHATTKTHVSRILTKLGLRDRAQLVVWA 208


>gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 233

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  ++ G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ +
Sbjct: 170 IDLTPREQSVLDLVARGLMNKEIARDLSTSVRNVEKYVSRLFTKTGTNSRTELVRYALEH 229

Query: 244 NI 245
            +
Sbjct: 230 GL 231


>gi|313897472|ref|ZP_07831015.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312957842|gb|EFR39467.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 210

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++L  RE+  +  +++G  + E+A  L +S  TV NY++S++ K   + R+    +  +N
Sbjct: 145 YDLNERELHFIQLVAKGLNNKELAQTLFLSEGTVRNYLSSLLEKLQLRDRTQLAIFYYQN 204


>gi|241889344|ref|ZP_04776645.1| two-component response transcriptional regulator [Gemella
           haemolysans ATCC 10379]
 gi|241863887|gb|EER68268.1| two-component response transcriptional regulator [Gemella
           haemolysans ATCC 10379]
          Length = 199

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 7/67 (10%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N+F S++        LT +E   L  I EG  + EIA  L +S  T+ NYI++I+ K   
Sbjct: 131 NIFNSHN-------PLTNQEKIILLKIKEGLPNKEIANELFLSEGTIRNYISNILTKLNC 183

Query: 231 KTRSGAI 237
           K R+ A+
Sbjct: 184 KNRTEAV 190


>gi|149012406|ref|ZP_01833437.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147763462|gb|EDK70398.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
          Length = 199

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A
Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEA 189


>gi|56696017|ref|YP_166371.1| hypothetical protein SPO1120 [Ruegeria pomeroyi DSS-3]
 gi|56677754|gb|AAV94420.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 251

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  R+ E L W+++GKT  +I V+ G+S + +  ++         +T + A+A A   N+
Sbjct: 184 LNQRQRELLEWVADGKTMQDIQVLTGLSVSAIEKHLRKARDALGVETSAQAVAKAAFLNL 243

Query: 246 V 246
           +
Sbjct: 244 I 244


>gi|298207898|ref|YP_003716077.1| DNA-binding response regulator, LuxR family protein [Croceibacter
           atlanticus HTCC2559]
 gi|83850539|gb|EAP88407.1| DNA-binding response regulator, LuxR family protein [Croceibacter
           atlanticus HTCC2559]
          Length = 210

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE+E L +IS+G  + +IA +L I+  TV+ Y   + +K    + +G I
Sbjct: 150 LSSREIEVLNFISKGLKNKDIAEMLKINEKTVSTYKTRLQKKLNVDSVAGLI 201


>gi|306825879|ref|ZP_07459218.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432240|gb|EFM35217.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 199

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A
Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLNAGNRTEA 189


>gi|228964507|ref|ZP_04125619.1| hypothetical protein bthur0004_13540 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795209|gb|EEM42703.1| hypothetical protein bthur0004_13540 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 176

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I
Sbjct: 137 ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNI 176


>gi|257790178|ref|YP_003180784.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257474075|gb|ACV54395.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 486

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           FELT RE E L +++ G+++  IA  L IS NTV  +I  +  KT   ++
Sbjct: 420 FELTPREREILGYLARGRSARFIAETLIISENTVWAHIKRVYAKTGVHSK 469


>gi|222082949|ref|YP_002542314.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727628|gb|ACM30717.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 219

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE + L   ++G+TS ++A  LGIS  T   +  ++MRK    + +   AYAVR
Sbjct: 157 LTLRERQVLLLSAQGQTSRQMAERLGISPLTARKHRENLMRKLNLHSTAEVTAYAVR 213


>gi|314924490|gb|EFS88321.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|315094740|gb|EFT66716.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315102902|gb|EFT74878.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328589|gb|EGE70349.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 242

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +
Sbjct: 178 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 237

Query: 246 V 246
           V
Sbjct: 238 V 238


>gi|313836389|gb|EFS74103.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928854|gb|EFS92685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971268|gb|EFT15366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906399|gb|EGG26174.1| putative two-component response regulator [Propionibacterium sp.
           P08]
          Length = 224

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +
Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|300934165|ref|ZP_07149421.1| putative transcription regulator [Corynebacterium resistens DSM
           45100]
          Length = 240

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ELT RE E L  ++ G T  E+A  L IS  TV  ++++I+RKT    R
Sbjct: 182 ELTRREKEVLRLLARGYTYREMAERLFISVKTVETHVSNILRKTQQSNR 230


>gi|209528286|ref|ZP_03276747.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209491272|gb|EDZ91666.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 203

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/81 (23%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 165 LAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L  Y+ ++ + S  +   +  ELT  E++ +  +++GK + EI+ I+ +S+ T+ ++I++
Sbjct: 121 LTRYRKSVIEASQKIRVREGVELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISN 180

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           ++ KT    R+    +A+ + 
Sbjct: 181 MLGKTGLHNRTQLARWALESQ 201


>gi|91786204|ref|YP_547156.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91695429|gb|ABE42258.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 222

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE +    ++ GK+  EI   L ++ NTV+ Y A I+ KT T+       YA R+
Sbjct: 159 LSHREHQVFRLLTAGKSVGEIGAQLNLAPNTVSTYRARILEKTGTRNDVELALYAERH 216


>gi|330969423|gb|EGH69489.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 255

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 184 KLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 240


>gi|258591000|emb|CBE67295.1| Two component transcriptional regulator, LuxR family [NC10
           bacterium 'Dutch sediment']
          Length = 216

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           LT RE E + W+ +G T+ EIA  L IS  TV  ++++I  K
Sbjct: 156 LTDREQEIVGWVIQGMTNKEIAARLEISDKTVKAHLSNIFSK 197


>gi|258510658|ref|YP_003184092.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477384|gb|ACV57703.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 200

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  L+ RE++ L     G T+ ++A  L +S  TV NY++  + K    TR  AI  A
Sbjct: 137 DNPLSAREIDVLRLAKRGLTTRQMAKELFLSEGTVRNYLSGALAKLGCATRQEAIRKA 194


>gi|197335139|ref|YP_002156737.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri
           MJ11]
 gi|197316629|gb|ACH66076.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri
           MJ11]
          Length = 203

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT RE+E L  +++G  + ++A  L IS  TV  ++ S+++K   K+R  A
Sbjct: 145 QLTARELEILQHVAKGMRNKQVADQLFISEATVKVHMKSLLKKLNVKSRVAA 196


>gi|126666054|ref|ZP_01737034.1| probable transcriptional regulator [Marinobacter sp. ELB17]
 gi|126629376|gb|EAZ99993.1| probable transcriptional regulator [Marinobacter sp. ELB17]
          Length = 257

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R++  L  +S+G+++ +IA  L I+  TV  ++++I+RK +   R  AI  A
Sbjct: 192 LTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRKLSVHNRVQAILSA 246


>gi|15901823|ref|NP_346427.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111656996|ref|ZP_01407802.1| hypothetical protein SpneT_02001776 [Streptococcus pneumoniae
           TIGR4]
 gi|148995258|ref|ZP_01824066.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|168490006|ref|ZP_02714205.1| DNA-binding response regulator [Streptococcus pneumoniae SP195]
 gi|5830548|emb|CAB54585.1| response regulator [Streptococcus pneumoniae]
 gi|14973509|gb|AAK76067.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|147926803|gb|EDK77860.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|183571627|gb|EDT92155.1| DNA-binding response regulator [Streptococcus pneumoniae SP195]
 gi|332072085|gb|EGI82572.1| response regulator [Streptococcus pneumoniae GA17570]
          Length = 199

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193


>gi|326331141|ref|ZP_08197437.1| two-component system response regulator TcsR2 [Nocardioidaceae
           bacterium Broad-1]
 gi|325951036|gb|EGD43080.1| two-component system response regulator TcsR2 [Nocardioidaceae
           bacterium Broad-1]
          Length = 202

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L    +G +  +IA  L ++ +TV NY+++ + KT+T+ ++ A   A RN 
Sbjct: 141 LTSRERDVLAASEDGSSIADIASRLFLAPSTVRNYLSAAIGKTSTRNKTEAALTARRNG 199


>gi|323491776|ref|ZP_08096951.1| response regulator [Vibrio brasiliensis LMG 20546]
 gi|323313911|gb|EGA67000.1| response regulator [Vibrio brasiliensis LMG 20546]
          Length = 210

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 33/52 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ELT RE++ L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A
Sbjct: 147 ELTDRELQILKEVAKGFRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAA 198


>gi|170747190|ref|YP_001753450.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653712|gb|ACB22767.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 228

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             G+   LT RE E L ++S G ++ E+A  L +S  TV  +  ++ RKT T
Sbjct: 135 EAGESLGLTPREAEVLRFLSSGFSNKEVARRLALSVRTVETHRLNLRRKTQT 186


>gi|21222669|ref|NP_628448.1| response regulatory protein [Streptomyces coelicolor A3(2)]
 gi|8248775|emb|CAB93036.1| putative respose regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 223

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  ++ G  + EIA  L IS  TV  ++  I  K    TR+GA+A A
Sbjct: 162 LTDRERDILAQLATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVA 216


>gi|326798146|ref|YP_004315965.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326548910|gb|ADZ77295.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 211

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I+EGKT+ EI   L IS +TV  +  ++M+K      +  I  A +  
Sbjct: 150 KLTRREQEVLRCIAEGKTTVEIGETLFISPHTVETHRRNLMQKFEVSNAAALIRVATQYQ 209

Query: 245 IV 246
           ++
Sbjct: 210 LI 211


>gi|300694462|ref|YP_003750435.1| nitrate/nitrite response regulator in two-component regulatory
           system with narx, regulates anaerobic respiration and
           fermentation (luxr/uhpa familiy) [Ralstonia solanacearum
           PSI07]
 gi|299076499|emb|CBJ35824.1| Nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           PSI07]
          Length = 217

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +  +  G ++ EIA  L ++ +TV  ++ +I++K    +R     YAV N +
Sbjct: 155 LTARERDIVQGLVRGDSNKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214


>gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 216

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 38/61 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT  E++ +  +++GK + EI+ I+ +S+ T+ ++I++++ KT    R+    +A+ +
Sbjct: 154 VELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISNMLGKTGLHNRTQLARWALES 213

Query: 244 N 244
            
Sbjct: 214 Q 214


>gi|289167132|ref|YP_003445399.1| response regulator [Streptococcus mitis B6]
 gi|288906697|emb|CBJ21531.1| response regulator [Streptococcus mitis B6]
          Length = 199

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLHAGNRTEAANIA 193


>gi|229818194|ref|ZP_04448476.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM
           20098]
 gi|229784445|gb|EEP20559.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM
           20098]
          Length = 226

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 164 LLAAYQ----ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           +L+A+Q     N      +H  +   L+ RE E +  I+ G T  E+A  L IS  TV  
Sbjct: 140 VLSAFQNGSSTNSSIGGSIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISVKTVET 199

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++S++RK     R+    +A    IV
Sbjct: 200 HVSSVLRKLQLSNRTELTRWAADRRIV 226


>gi|171060520|ref|YP_001792869.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170777965|gb|ACB36104.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 224

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LTGRE+E L  +  G   +  A  +G+S  TV+NY   I +K         + YA ++ 
Sbjct: 162 QLTGRELEVLQLLLAGLGVEVAAARIGLSEKTVSNYQTQIRQKLGVANSIELVHYARQHG 221

Query: 245 IV 246
           ++
Sbjct: 222 LM 223


>gi|148658361|ref|YP_001278566.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570471|gb|ABQ92616.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 226

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + +GKT+ EIA  L IS  TV  ++  I+ K     R+ A   A+   +
Sbjct: 163 LTAREQQVLKLLMQGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGL 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|91775168|ref|YP_544924.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91709155|gb|ABE49083.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 213

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    ++ GK  +EI+ IL IS+ TV NY   + +K    +    +  A+++ +
Sbjct: 151 LSAREFEVFRLLAAGKGVEEISTILKISQKTVANYQTLLKQKLGITSPIELVRLAIKHGV 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|320011210|gb|ADW06060.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 229

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           GL+A++ A    + +     ++      LTGRE E L  ++ G ++D+IA  L +S  TV
Sbjct: 136 GLIASFLAQGGSAGEGADAAEYAERLAALTGREREVLVQVAGGHSNDQIADRLVVSPLTV 195

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++   M K   + R+  +  A  + +V
Sbjct: 196 KTHVNRAMAKLGARDRAQLVVIAYESGLV 224


>gi|154509662|ref|ZP_02045304.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799296|gb|EDN81716.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC
           17982]
          Length = 216

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 165 LAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LA +  + F + +V    D EL   + RE E +  I+ G T  E+A  L IS  TV  ++
Sbjct: 133 LAGFVLDAFGTGEVST-TDTELDLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHV 191

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           +S++RK     R+    +A++ +IV
Sbjct: 192 SSVLRKLQLSNRNELTRWAMQRHIV 216


>gi|59712516|ref|YP_205292.1| DNA-binding response regulator in two-component regulatory system
           with NarQ [Vibrio fischeri ES114]
 gi|59480617|gb|AAW86404.1| DNA-binding response regulator in two-component regulatory system
           with NarQ [Vibrio fischeri ES114]
          Length = 203

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT RE+E L  +++G  + ++A  L IS  TV  ++ S+++K   K+R  A
Sbjct: 145 QLTARELEILQHVAKGMRNKQVADKLFISEATVKVHMKSLLKKLNVKSRVAA 196


>gi|84498640|ref|ZP_00997397.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
 gi|84381037|gb|EAP96923.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
          Length = 215

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G D+E LT RE E L   ++G ++ EIA    +S  TV  +++ I+ K A + R   + Y
Sbjct: 149 GADYERLTPREREILLRAAQGLSNAEIAAAEFLSEATVKTHVSRILGKLALRDRVQLVVY 208

Query: 240 AVRNNIV 246
           A  + ++
Sbjct: 209 AYEHGLL 215


>gi|317123319|ref|YP_004097431.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587407|gb|ADU46704.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM
           43043]
          Length = 985

 Score = 35.8 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE+E L  ++ G ++ +I   L IS  TV+ ++++++ K     R+ A A A
Sbjct: 923 ELTPRELEVLALVARGLSNGQIGKQLYISTKTVSVHVSNLLAKLGASGRTEAAAIA 978


>gi|237650688|ref|ZP_04524940.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237821211|ref|ZP_04597056.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 199

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193


>gi|226366081|ref|YP_002783864.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244571|dbj|BAH54919.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 222

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  +  +LT RE E +T I+EG T+ EI   L +S  T   +++ I+ K   + R+  + 
Sbjct: 149 HSSRLDDLTDREREVMTLIAEGLTNAEIGSRLFLSPATARTHVSRILLKLGARDRTQLVV 208

Query: 239 YA 240
            A
Sbjct: 209 MA 210


>gi|114765847|ref|ZP_01444940.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541846|gb|EAU44883.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 204

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+ RE+E L  +++GK++ EIA  L I   TV  ++ S+ RK     R+ A   A
Sbjct: 143 KLSPRELEVLEGLTQGKSNKEIARDLDIREPTVKLHVKSLYRKINASNRTHAAMIA 198


>gi|21224033|ref|NP_629812.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7801256|emb|CAB91120.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 237

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE E LT I+ G ++ EIA  L I+ +TV  +I  +  K   + R+ A+  A
Sbjct: 164 DLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVA 219


>gi|328551897|gb|AEB22389.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
          Length = 214

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE++    I EGK++  IA  L ++  TV NY++ I+ K     R+    Y
Sbjct: 156 LTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVSNRTELTLY 209


>gi|239981698|ref|ZP_04704222.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 243

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT REVE L  ++EG+ +  IA  +GI+ +T   ++  ++ K    +R
Sbjct: 156 LTPREVEVLVRVAEGEDTRVIAAGMGIAPSTARTHVQRVLMKLGVGSR 203


>gi|238024634|ref|YP_002908866.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Burkholderia glumae BGR1]
 gi|237879299|gb|ACR31631.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Burkholderia glumae BGR1]
          Length = 214

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVFRRIAAGQTLTEIANALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHRL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|284989297|ref|YP_003407851.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284062542|gb|ADB73480.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 270

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 33/49 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT R+ +  T ++EG +++EIA  L +S  TV +++ ++MR+   +TR+
Sbjct: 208 LTERQRDVATLVAEGLSNEEIASRLFLSPATVKSHLTAVMRRLDIRTRT 256


>gi|157850155|gb|ABV89903.1| acyl-homoserine lactone receptor [Burkholderia ubonensis]
          Length = 133

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 20/31 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNT 216
           LT RE E L W +EGKT+ EI  IL IS  T
Sbjct: 103 LTAREREVLCWTAEGKTACEIGQILSISERT 133


>gi|184200079|ref|YP_001854286.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183580309|dbj|BAG28780.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 252

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT  E E L WI++G  + EIA  + +S  +V +Y++ +  K A + R
Sbjct: 178 KLTDCEQETLQWIAKGLNNAEIAERMSVSHGSVKSYVSHLCEKLAVRDR 226


>gi|87122320|ref|ZP_01078202.1| transcriptional regulatory protein degu [Marinomonas sp. MED121]
 gi|86162463|gb|EAQ63746.1| transcriptional regulatory protein degu [Marinomonas sp. MED121]
          Length = 206

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           Y V   +  ELT RE+  L  ++ G  +  IA  L IS  TV  +  ++ +K    + +G
Sbjct: 136 YQVQEDEKEELTKRELAVLKELASGAANKTIANNLSISVRTVETHRQNLKQKLGIHSAAG 195

Query: 236 AIAYAVRNNIV 246
              YA+ + ++
Sbjct: 196 LTKYAIEHKLI 206


>gi|85708110|ref|ZP_01039176.1| two-component response regulator [Erythrobacter sp. NAP1]
 gi|85689644|gb|EAQ29647.1| two-component response regulator [Erythrobacter sp. NAP1]
          Length = 217

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E +  ++EG T+ EIA  L IS  TV  ++  ++ K     R+ A   AV+
Sbjct: 152 LTSREQEVVELVAEGLTNKEIARKLDISPATVKVHVERLIGKLGVADRTQAAVMAVK 208


>gi|291545304|emb|CBL18412.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 206

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ++ RE++ +  I+ G ++ EIA  L +S  TV NY++SI+ K   + R+
Sbjct: 148 ISERELDIIRLIANGYSNKEIAAELFLSEGTVRNYLSSILDKLQLRDRT 196


>gi|262279135|ref|ZP_06056920.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259486|gb|EEY78219.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 239

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + LT RE E +  +S+G +   +A +LGIS  T+  ++ + MRK     R+
Sbjct: 181 YGLTPREQEVVRLVSKGLSDKHVANLLGISFTTLRTHLNNAMRKIGCNNRT 231


>gi|302346377|ref|YP_003814675.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
 gi|302151055|gb|ADK97316.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
          Length = 214

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E E L  I+ G T+ EIA     S +TVN +  +I RK        AI YA+R+ +
Sbjct: 147 LTKTETEILKEIALGATTREIAEKRFSSFHTVNTHRKNIFRKLGVNNVHEAIRYAMRSGL 206

Query: 246 V 246
           V
Sbjct: 207 V 207


>gi|254477704|ref|ZP_05091090.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11]
 gi|214031947|gb|EEB72782.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11]
          Length = 261

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E L+ ++EG  +  IA  LG+S   V+ + A+  +     TR  A+A A+    
Sbjct: 199 LTQRQREVLSLLAEGMMTARIAETLGLSEAAVSLHFANARKALGASTREHALALALTRGF 258

Query: 246 V 246
           +
Sbjct: 259 I 259


>gi|145295107|ref|YP_001137928.1| hypothetical protein cgR_1050 [Corynebacterium glutamicum R]
 gi|140845027|dbj|BAF54026.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 203

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L    +G +++EIAV   ++  T  NY++  M K   + R
Sbjct: 143 LTNREEEVLELAGQGLSAEEIAVAAHLAPGTTRNYLSQAMTKVGAQNR 190


>gi|113867311|ref|YP_725800.1| ATP-dependent transcription regulator LuxR [Ralstonia eutropha H16]
 gi|113526087|emb|CAJ92432.1| ATP-dependent transcriptional regulator,MalT-family [Ralstonia
           eutropha H16]
          Length = 947

 Score = 35.4 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           EL+ RE + +  + +G  + +IA  LG+S  TV  ++ +I RK    +R  A+A
Sbjct: 878 ELSDREADVVRLLGQGLPNKKIARTLGLSPETVKWHLRNIFRKLGVSSRDEAVA 931


>gi|56479349|ref|YP_160938.1| LuxR family DNA-binding response regulator [Aromatoleum aromaticum
           EbN1]
 gi|56315392|emb|CAI10037.1| DNA-binding response regulator, LuxR family [Aromatoleum aromaticum
           EbN1]
          Length = 215

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE + L  I+EG TS  IA  L ++ +TV  +  +IMRK    + +    YA+R+ I
Sbjct: 151 ITARERQVLQLIAEGYTSTRIADRLHLAPSTVEVHRRNIMRKLDLHSVAELTKYAIRSGI 210


>gi|114562693|ref|YP_750206.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333986|gb|ABI71368.1| transcriptional regulator, LuxR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 210

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           YQ+ M  ++D       +LT RE E L  +  G T+ +IA  L +S +T+  ++    RK
Sbjct: 132 YQSLMSVNHD---DDSEQLTIREREVLQTLLSGSTNLDIANQLFVSESTIKTHLYRAFRK 188

Query: 228 TATKTRSGAIAYA 240
               +R  AIA+A
Sbjct: 189 IGVSSRGQAIAWA 201


>gi|325048879|dbj|BAJ79306.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis]
          Length = 420

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EL  RE E L  +  G+ +  I+  LG+S +TV  ++A ++RK + ++R
Sbjct: 356 ELAPREFEVLEHLVAGRRNKAISERLGVSESTVKFHVAGVLRKLSVESR 404


>gi|302868454|ref|YP_003837091.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302571313|gb|ADL47515.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 256

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V+  +D  L+ RE+E L   +EG ++ +IA  L ++  TV  ++ +I  K +  +R  A+
Sbjct: 161 VYGRRDEVLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSRIDAV 220

Query: 238 AYAVRNNIV 246
             AV  +I+
Sbjct: 221 NKAVAASII 229


>gi|261212443|ref|ZP_05926728.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341]
 gi|260838374|gb|EEX65030.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341]
          Length = 208

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REVE    + +GK   EIA  L +S  TV+ + A+I+ K         I +A++++
Sbjct: 144 DLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHH 203

Query: 245 IV 246
           ++
Sbjct: 204 LL 205


>gi|302533992|ref|ZP_07286334.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442887|gb|EFL14703.1| two-component system response regulator [Streptomyces sp. C]
          Length = 233

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+
Sbjct: 167 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 226

Query: 242 RNNI 245
              +
Sbjct: 227 ERGL 230


>gi|157375088|ref|YP_001473688.1| putative nitrate/nitrite response regulator; NarL [Shewanella
           sediminis HAW-EB3]
 gi|157317462|gb|ABV36560.1| putative nitrate/nitrite response regulator; NarL [Shewanella
           sediminis HAW-EB3]
          Length = 213

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I+ GK++ +IA  LGI+  TV  ++ ++++K   K+R  A  +AV + I
Sbjct: 152 LTQRELQNLKLIAAGKSNKDIANKLGIAETTVKVHVKNLLKKLGLKSRVEAAVWAVEHKI 211


>gi|149926201|ref|ZP_01914463.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149825019|gb|EDM84231.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 228

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE + LT I++G+   EIA +L +S  T++ Y A +++K    +    + YA+
Sbjct: 166 QLTRRERQVLTLIAQGRPRREIAELLKVSPRTIDAYRARLLQKLNLDSSVQLVKYAI 222


>gi|103487939|ref|YP_617500.1| two component LuxR family transcriptional regulator [Sphingopyxis
           alaskensis RB2256]
 gi|98978016|gb|ABF54167.1| two component transcriptional regulator, LuxR family [Sphingopyxis
           alaskensis RB2256]
          Length = 210

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA--IAYA 240
           LT RE E L  ++ G  +  IA  LG+S  TV  + AS+M K A ++ S A  IA+A
Sbjct: 143 LTPREKEVLDGLARGYPNKTIAYDLGVSSRTVEVHRASLMSKLAVRSLSDALRIAFA 199


>gi|330963452|gb|EGH63712.1| DNA binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 262

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 189 KLSRRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245


>gi|167573291|ref|ZP_02366165.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 205

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE + L  I++G  + EIA +L IS+ TV+ +   +M+K   +  +  I +A R
Sbjct: 137 KLTRREKQILKLIADGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVIHWAYR 194


>gi|293189077|ref|ZP_06607804.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           odontolyticus F0309]
 gi|292821991|gb|EFF80923.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           odontolyticus F0309]
          Length = 216

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 165 LAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LA +  + F + +V    D EL   + RE E +  I+ G T  E+A  L IS  TV  ++
Sbjct: 133 LAGFVLDAFGTGEVSI-TDTELDLLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHV 191

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           +S++RK     R+    +A++ +IV
Sbjct: 192 SSVLRKLQLSNRNELTRWAMQRHIV 216


>gi|291453559|ref|ZP_06592949.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356508|gb|EFE83410.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 236

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT REVE L  ++EG+ +  IA  +GI+ +T   ++  ++ K    +R
Sbjct: 149 LTPREVEVLVRVAEGEDTRVIAAGMGIAPSTARTHVQRVLMKLGVGSR 196


>gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
          Length = 203

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 38/61 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT  E++ +  +++GK + EI+ I+ +S+ T+ ++I++++ KT    R+    +A+ +
Sbjct: 141 VELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISNMLGKTGLHNRTQLARWALES 200

Query: 244 N 244
            
Sbjct: 201 Q 201


>gi|282865473|ref|ZP_06274524.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282559517|gb|EFB65068.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 230

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT REVE L  ++EG+ +  IA  +GI+ +T   ++  ++ K    +R
Sbjct: 156 LTPREVEVLLRVAEGEDTRLIAAGMGIASSTARTHVQRVLMKLGVGSR 203


>gi|307710890|ref|ZP_07647317.1| transcriptional regulatory protein degU [Streptococcus mitis SK321]
 gi|307617335|gb|EFN96508.1| transcriptional regulatory protein degU [Streptococcus mitis SK321]
          Length = 199

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193


>gi|307324296|ref|ZP_07603504.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890027|gb|EFN21005.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT REVE L  ++EG+ +  IA  +GI+ +T   ++  ++ K    +R
Sbjct: 156 LTPREVEVLVRVAEGEDTRLIAAGMGIAPSTARTHVQRVLMKLGVGSR 203


>gi|256784889|ref|ZP_05523320.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 226

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE E LT I+ G ++ EIA  L I+ +TV  +I  +  K   + R+ A+  A
Sbjct: 153 DLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVA 208


>gi|183980166|ref|YP_001848457.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
 gi|183173492|gb|ACC38602.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
          Length = 220

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 35/63 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  G   EL+ RE + L  ++ G+T+ +IA  L ++ NTV +Y+ S++     + R  A+
Sbjct: 152 ISTGNPLELSRREYQVLERLAIGETNAQIAQKLQLAPNTVKSYVQSLLAHLDARNRLDAV 211

Query: 238 AYA 240
             A
Sbjct: 212 IKA 214


>gi|148273247|ref|YP_001222808.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831177|emb|CAN02129.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 220

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    ++ G ++ E+A +  +S +TV  +++SI+ K A + R   + YA  + +
Sbjct: 155 LSAREKDVFGHVARGLSNAEVAALEFVSESTVKTHVSSILAKLALRDRVQLVVYAHDHRL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|158313488|ref|YP_001505996.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158108893|gb|ABW11090.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 217

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++ E+A    +S  TV  ++A I+ K   + R  A+  A    +
Sbjct: 151 LTPRELEVLRFLARGLSNAELAARFQLSEATVKTHVARILGKLRLRDRVQAVVVAYETGL 210

Query: 246 V 246
           V
Sbjct: 211 V 211


>gi|325964357|ref|YP_004242263.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470444|gb|ADX74129.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 241

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G  + EIA  L +S  TV  ++  I+ K     RS A+A A R+ +
Sbjct: 178 LTAREREVLGAMAVGLKNAEIANKLFLSETTVKTHVHRILLKLGLSDRSQAVAVAYRSGL 237

Query: 246 V 246
           +
Sbjct: 238 I 238


>gi|307825543|ref|ZP_07655761.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
 gi|307733429|gb|EFO04288.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
          Length = 132

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K+  V+ G+   LT RE +    ++EG     IA +L +S  TVN ++ +I  K    +
Sbjct: 3   IKAKMVNQGR---LTAREADVAMLMAEGHADKVIARLLAVSIRTVNAHVGNIYEKLELHS 59

Query: 233 RSGAIAYAVRNN 244
            S  ++ AV NN
Sbjct: 60  ESIGVSTAVINN 71


>gi|315505170|ref|YP_004084057.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315411789|gb|ADU09906.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 256

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V+  +D  L+ RE+E L   +EG ++ +IA  L ++  TV  ++ +I  K +  +R  A+
Sbjct: 161 VYGRRDEVLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSRIDAV 220

Query: 238 AYAVRNNIV 246
             AV  +I+
Sbjct: 221 NKAVAASII 229


>gi|269794456|ref|YP_003313911.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269096641|gb|ACZ21077.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 224

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT  EV  +  I EG ++ EIA  L I+  TV N+I S++ K   + R+   A+
Sbjct: 154 DLTPSEVRVVDLIGEGLSNREIAERLSIAEKTVKNHITSLLAKMGLQRRTQVAAW 208


>gi|218549608|ref|YP_002383399.1| transcriptional regulator NarP [Escherichia fergusonii ATCC 35469]
 gi|218357149|emb|CAQ89784.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia fergusonii ATCC 35469]
 gi|325498005|gb|EGC95864.1| transcriptional regulator NarP [Escherichia fergusonii ECD227]
          Length = 216

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA  L IS  TV  +I +++RK   ++R  A
Sbjct: 156 LTERELDVLHELAKGLSNKQIASALNISEQTVKVHIRNLLRKLNVRSRVAA 206


>gi|149004513|ref|ZP_01829227.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147757571|gb|EDK64593.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
          Length = 189

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 129 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 183


>gi|325520232|gb|EGC99400.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. TJI49]
          Length = 215

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ +  I  G+T  +IA  L +S  TV+ Y   I+ K      +  I YAVR+++
Sbjct: 149 LSTRELDVMRRIVAGQTVTQIASALDLSAKTVSTYKMRILEKMELPHEAALIRYAVRHDL 208


>gi|300310532|ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073317|gb|ADJ62716.1| virulence regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    + +G+   +IA  L +S  TV+ Y + +++K +    +  I YA++NN+
Sbjct: 148 LSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNNADIIYYAIKNNL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|226308958|ref|YP_002768918.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226188075|dbj|BAH36179.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 420

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EL  RE E L  +  G+ +  I+  LG+S +TV  ++A ++RK   ++R
Sbjct: 356 ELAPREFEVLEHLVAGRRNKAISERLGVSESTVKFHVAGVLRKLGVESR 404


>gi|21730643|pdb|1L3L|A Chain A, Crystal Structure Of A Bacterial Quorum-Sensing
           Transcription Factor Complexed With Pheromone And Dna
 gi|21730644|pdb|1L3L|B Chain B, Crystal Structure Of A Bacterial Quorum-Sensing
           Transcription Factor Complexed With Pheromone And Dna
 gi|21730645|pdb|1L3L|C Chain C, Crystal Structure Of A Bacterial Quorum-Sensing
           Transcription Factor Complexed With Pheromone And Dna
 gi|21730646|pdb|1L3L|D Chain D, Crystal Structure Of A Bacterial Quorum-Sensing
           Transcription Factor Complexed With Pheromone And Dna
 gi|23200109|pdb|1H0M|A Chain A, Three-Dimensional Structure Of The Quorum Sensing Protein
           Trar Bound To Its Autoinducer And To Its Target Dna
 gi|23200110|pdb|1H0M|B Chain B, Three-Dimensional Structure Of The Quorum Sensing Protein
           Trar Bound To Its Autoinducer And To Its Target Dna
 gi|23200111|pdb|1H0M|C Chain C, Three-Dimensional Structure Of The Quorum Sensing Protein
           Trar Bound To Its Autoinducer And To Its Target Dna
 gi|23200112|pdb|1H0M|D Chain D, Three-Dimensional Structure Of The Quorum Sensing Protein
           Trar Bound To Its Autoinducer And To Its Target Dna
          Length = 234

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ GKT +EIA + G+  N+V   +    ++   ++++   A A+R  +
Sbjct: 174 LDPKEATYLRWIAVGKTXEEIADVEGVKYNSVRVKLREAXKRFDVRSKAHLTALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|318081701|ref|ZP_07989013.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 85

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   + G  + E+A  L +S+ TV NY+++ ++K A + R+ A+  A
Sbjct: 25  LTTREAEVLRAAAGGAGNAELATALHLSQGTVRNYLSTAIQKLAARNRADAVRIA 79


>gi|324114391|gb|EGC08360.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 214

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE++ L  +++G ++ +IA  L IS  TV  +I +++RK   ++R  A
Sbjct: 154 LTERELDVLHELAKGLSNKQIASALNISEQTVKVHIRNLLRKLNVRSRVAA 204


>gi|300933646|ref|ZP_07148902.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Corynebacterium resistens DSM
           45100]
          Length = 201

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT REV+    +  GK+S  IA  L +S  TV N+++S + KT    R
Sbjct: 141 LTPREVDVCREVLTGKSSANIAKALHLSEGTVRNHVSSAITKTQASNR 188


>gi|37675987|ref|NP_936383.1| putative fimbrial protein Z, transcriptional regulator [Vibrio
           vulnificus YJ016]
 gi|320158130|ref|YP_004190508.1| putative two-component response regulator [Vibrio vulnificus
           MO6-24/O]
 gi|37200527|dbj|BAC96353.1| putative fimbrial protein Z, transcriptional regulator [Vibrio
           vulnificus YJ016]
 gi|319933442|gb|ADV88305.1| putative two-component response regulator [Vibrio vulnificus
           MO6-24/O]
          Length = 199

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           EL+ RE   + ++ +GKT+ EIA IL IS  T++ Y   ++ K
Sbjct: 142 ELSDREAAVMNYLLKGKTNREIANILSISDKTISTYKRRLLNK 184


>gi|329937421|ref|ZP_08286979.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|329303297|gb|EGG47184.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
          Length = 229

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E +   +EG ++ EIA  L +S  TV  +I   M K   + R+  +  A +  
Sbjct: 154 ELTARERETMAMAAEGMSNSEIAEALVLSPLTVRTHIYRAMAKLGARDRAQLVVIAYQTG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|318042426|ref|ZP_07974382.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 253

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE E L  +++GK + EIA  L I+  T  +Y++SI+ K     R+ A A+A+ + 
Sbjct: 190 DLNQREREILPLLAKGKKNREIAAELFIAETTTRDYVSSILSKLQVSNRAAAAAWAIEHG 249

Query: 245 IV 246
            V
Sbjct: 250 FV 251


>gi|315937155|gb|ADU56162.1| hypothetical protein CA915-41 [uncultured organism CA915]
          Length = 805

 Score = 35.4 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +LT  E+   T  + G T+ +IA  L I+ +TV  ++  + RK   ++RSG
Sbjct: 750 QLTDAELRVATLAAAGNTNRQIAARLSITVSTVEQHLTKVYRKLNVRSRSG 800


>gi|295112119|emb|CBL28869.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Synergistetes bacterium SGP1]
          Length = 229

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+ RE   L W+S+G ++ E+A    +S  TV N+++ +++K   + R+ A   A
Sbjct: 149 DLSPREKVVLYWLSQGMSNQEVAQKTVLSEKTVKNHVSHMLKKLELRDRTQAAILA 204


>gi|256838723|ref|ZP_05544233.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739642|gb|EEU52966.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 254

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           D +LT RE E L  I +G  S EIA  L +S  TVNN+  +I+ K
Sbjct: 190 DQQLTKREKEILLLIRQGFLSKEIAYKLNLSIYTVNNHRKNILAK 234


>gi|154509006|ref|ZP_02044648.1| hypothetical protein ACTODO_01523 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798640|gb|EDN81060.1| hypothetical protein ACTODO_01523 [Actinomyces odontolyticus ATCC
           17982]
          Length = 204

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A
Sbjct: 133 HEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAA 192

Query: 239 Y 239
           +
Sbjct: 193 W 193


>gi|67641422|ref|ZP_00440201.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|126444300|ref|YP_001063145.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126447142|ref|YP_001077967.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126456927|ref|YP_001076095.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134281974|ref|ZP_01768680.1| BipB protein [Burkholderia pseudomallei 305]
 gi|166999878|ref|ZP_02265708.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167725537|ref|ZP_02408773.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167743182|ref|ZP_02415956.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167820355|ref|ZP_02452035.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167828726|ref|ZP_02460197.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167850181|ref|ZP_02475689.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167898791|ref|ZP_02486192.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167907119|ref|ZP_02494324.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167915473|ref|ZP_02502564.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167923317|ref|ZP_02510408.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217425144|ref|ZP_03456639.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226196039|ref|ZP_03791625.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507699|ref|ZP_04520414.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|242312836|ref|ZP_04811853.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254176376|ref|ZP_04883034.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254185184|ref|ZP_04891773.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|254186839|ref|ZP_04893355.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254204939|ref|ZP_04911292.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254263032|ref|ZP_04953897.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|254301472|ref|ZP_04968916.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|126223791|gb|ABN87296.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126230695|gb|ABN94108.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|126239996|gb|ABO03108.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134246503|gb|EBA46591.1| BipB protein [Burkholderia pseudomallei 305]
 gi|147754525|gb|EDK61589.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|157811119|gb|EDO88289.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157934523|gb|EDO90193.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697418|gb|EDP87388.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|184215776|gb|EDU12757.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|217391749|gb|EEC31776.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225931932|gb|EEH27933.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999904|gb|EEP49328.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|238522359|gb|EEP85804.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242136075|gb|EES22478.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|243064182|gb|EES46368.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254214034|gb|EET03419.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 214

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT RE + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R
Sbjct: 146 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYR 203


>gi|307133584|dbj|BAJ19074.1| putative transcriptional regulator [Streptomyces sp. SANK 62799]
          Length = 431

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT  +V  L+ ++EG ++ +IA  L +SR TV+ +++ +       TR   +A A
Sbjct: 352 LTAAQVRILSLLAEGSSNGDIATSLQLSRQTVDYHLSRLRHALGAATRPALVARA 406


>gi|303243469|ref|ZP_07329811.1| transcriptional regulator, LysR family [Methanothermococcus
           okinawensis IH1]
 gi|302486030|gb|EFL48952.1| transcriptional regulator, LysR family [Methanothermococcus
           okinawensis IH1]
          Length = 277

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK----TRSGAIAYAV 241
           +T +++E L  ISE K+ +++A IL I  ++VN  I  + +K   K    + SG I    
Sbjct: 17  ITEKQIEILKLISENKSQNKVAKILNIPPSSVNIQIKRLEKKLGVKLIYSSTSGTILTES 76

Query: 242 RNNIV 246
             NIV
Sbjct: 77  AQNIV 81


>gi|257792554|ref|YP_003183160.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257476451|gb|ACV56771.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 550

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            ++  LT RE E L +++ G+T   IA  L ++ NTV +++ +I  K    TR
Sbjct: 489 AREGGLTEREAEILVYLARGRTKAYIADALFVTENTVRSHVRNIYSKLDVHTR 541


>gi|120601631|ref|YP_966031.1| two component LuxR family transcriptional regulator [Desulfovibrio
           vulgaris DP4]
 gi|120561860|gb|ABM27604.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris DP4]
          Length = 235

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L +++EG  + EIA +L +S  TV  + A+ M K    + +   A+A R  +
Sbjct: 164 LTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRAFAQRQGL 223


>gi|19552175|ref|NP_600177.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389840|ref|YP_225242.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323716|dbj|BAB98342.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325175|emb|CAF19656.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 203

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L    +G +++EIAV   ++  T  NY++  M K   + R
Sbjct: 143 LTNREEEVLELAGQGLSAEEIAVAAHLAPGTTRNYLSQAMTKVGAQNR 190


>gi|121603701|ref|YP_981030.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120592670|gb|ABM36109.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 214

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E    I+ G +  +IA  L +S  T++ + A++M+K   + +S  I YA+++ 
Sbjct: 148 KLTDREFEVFRLIAIGMSVTDIAGRLNLSAKTISTHKANLMQKMNLQNQSELIRYAIKHG 207

Query: 245 I 245
           +
Sbjct: 208 V 208


>gi|325298451|ref|YP_004258368.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
 gi|324318004|gb|ADY35895.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
          Length = 202

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  +  G T+ EIA  L IS +TV  +  +I RK    + +G   YA+ N +
Sbjct: 133 LSQREKEIICCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIHSAAGLTIYAIVNKL 192

Query: 246 V 246
           V
Sbjct: 193 V 193


>gi|320333847|ref|YP_004170558.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755136|gb|ADV66893.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 215

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G ++ EIA  L  +  TV +Y+++++ K   + R+ A+  A+   +
Sbjct: 155 LTDRECDVLRLLAGGYSNREIAGALRTTEGTVKSYVSNVLSKLGVRDRTRAVLKALELGV 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|148974075|ref|ZP_01811608.1| putative tetrathionate reductase complex: response regulator
           [Vibrionales bacterium SWAT-3]
 gi|145965772|gb|EDK31020.1| putative tetrathionate reductase complex: response regulator
           [Vibrionales bacterium SWAT-3]
          Length = 200

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           LT RE++ L  I +GK + +IA  L I+  TV  + AS+M+K + KT
Sbjct: 142 LTEREIDILKQIIDGKRNQKIADELCIAVRTVEVHRASLMKKFSAKT 188


>gi|330820500|ref|YP_004349362.1| DNA-binding response regulator, LuxR family [Burkholderia gladioli
           BSR3]
 gi|327372495|gb|AEA63850.1| DNA-binding response regulator, LuxR family [Burkholderia gladioli
           BSR3]
          Length = 214

 Score = 35.4 bits (80), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVFRRIATGQTLTEIANALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHRL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|307296354|ref|ZP_07576181.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878156|gb|EFN09379.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 250

 Score = 35.4 bits (80), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L W+  G  +  I+  + IS  TV  ++ +++RK   K R+ A  +A  + +
Sbjct: 158 LSDRELEILRWLIMGCPNKVISKRMNISEATVKVHVKAVLRKLRVKNRTQAAIWAANHGM 217


>gi|293192365|ref|ZP_06609476.1| DNA-binding response regulator VraR [Actinomyces odontolyticus
           F0309]
 gi|292820280|gb|EFF79274.1| DNA-binding response regulator VraR [Actinomyces odontolyticus
           F0309]
          Length = 204

 Score = 35.4 bits (80), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A
Sbjct: 133 HEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAA 192

Query: 239 Y 239
           +
Sbjct: 193 W 193


>gi|186470607|ref|YP_001861925.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184196916|gb|ACC74879.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 215

 Score = 35.4 bits (80), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    I  G+T+  IA+ L +S  TV+ + A I+ K      +G + YA+R+ +
Sbjct: 149 LSPREFDVFRRIVAGQTTTGIALELCLSVKTVSTHKAHILEKMQMPNENGLVRYAIRHKL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|333024623|ref|ZP_08452687.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744475|gb|EGJ74916.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 190

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L   + G  + E+A  L +S+ TV NY+++ ++K A + R+ A+  A
Sbjct: 130 LTTREAEVLRAAAGGAGNAELATALHLSQGTVRNYLSTAIQKLAARNRADAVRIA 184


>gi|308172085|ref|YP_003918790.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307604949|emb|CBI41320.1| two-component response regulator RBAM_002490 [Bacillus
           amyloliquefaciens DSM 7]
 gi|328910154|gb|AEB61750.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens
           LL3]
          Length = 214

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE++    I EGK++  IA  L ++  TV NY++ I+ K     R+    Y
Sbjct: 156 LTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVTNRTELTLY 209


>gi|297580291|ref|ZP_06942218.1| transcriptional regulator UhpA [Vibrio cholerae RC385]
 gi|297535937|gb|EFH74771.1| transcriptional regulator UhpA [Vibrio cholerae RC385]
          Length = 208

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REVE    + +GK   EIA  L +S  TV+ + A+I+ K         I +A++++
Sbjct: 144 DLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHH 203

Query: 245 IV 246
           ++
Sbjct: 204 LL 205


>gi|229491697|ref|ZP_04385518.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis
           SK121]
 gi|229321378|gb|EEN87178.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis
           SK121]
          Length = 420

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EL  RE E L  +  G+ +  I+  LG+S +TV  ++A ++RK   ++R
Sbjct: 356 ELAPREFEVLEHLVAGRRNKAISERLGVSESTVKFHVAGVLRKLGVESR 404


>gi|228968226|ref|ZP_04129225.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791489|gb|EEM39092.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 213

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+E L  +S+G ++ +IA  L +S   V   +  I +K    +RS A+  A+R+ I
Sbjct: 149 LTQKELEILESVSKGSSNKQIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRHGI 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|288574077|ref|ZP_06392434.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569818|gb|EFC91375.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 832

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE +    +SEG ++ EIA  L +S NTV  Y+ SI +K    +R
Sbjct: 775 LTFRENDVALLVSEGLSNREIAKRLFLSENTVKFYLKSIFQKLGISSR 822


>gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 229

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + T RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ +
Sbjct: 166 IDFTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEH 225

Query: 244 NI 245
            +
Sbjct: 226 GL 227


>gi|134095013|ref|YP_001100088.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
 gi|133738916|emb|CAL61963.1| Transcriptional regulator, LuxR family [Herminiimonas
           arsenicoxydans]
          Length = 185

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E    + +GKTS  IA  +G+S  TV  + A +MRK    T S
Sbjct: 126 LTPREREIAAMLVDGKTSKLIARQIGLSPRTVEMHRAKLMRKFTASTTS 174


>gi|72161171|ref|YP_288828.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71914903|gb|AAZ54805.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 221

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E +  + EG +++EIA  L +S  TV  +++  M K   + R+  +  A    
Sbjct: 154 DLTDREREVVALVGEGLSNEEIAARLVLSPATVKTHVSRAMAKLRVRDRAQLVVVAYETG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|121725788|ref|ZP_01679088.1| transcriptional regulator UhpA [Vibrio cholerae V52]
 gi|147671836|ref|YP_001215461.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|153211907|ref|ZP_01947754.1| transcriptional regulator UhpA [Vibrio cholerae 1587]
 gi|153830962|ref|ZP_01983629.1| transcriptional regulator UhpA [Vibrio cholerae 623-39]
 gi|229528490|ref|ZP_04417881.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)]
 gi|254285705|ref|ZP_04960668.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226]
 gi|262168530|ref|ZP_06036226.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27]
 gi|262191666|ref|ZP_06049843.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT
           5369-93]
 gi|121631553|gb|EAX63921.1| transcriptional regulator UhpA [Vibrio cholerae V52]
 gi|124116983|gb|EAY35803.1| transcriptional regulator UhpA [Vibrio cholerae 1587]
 gi|146314219|gb|ABQ18759.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|148873558|gb|EDL71693.1| transcriptional regulator UhpA [Vibrio cholerae 623-39]
 gi|150424202|gb|EDN16140.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226]
 gi|227015255|gb|ACP11464.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|229334852|gb|EEO00338.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)]
 gi|262023059|gb|EEY41764.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27]
 gi|262032455|gb|EEY51016.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT
           5369-93]
 gi|327485694|gb|AEA80100.1| Transcriptional regulatory protein UhpA [Vibrio cholerae LMA3894-4]
          Length = 208

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REVE    + +GK   EIA  L +S  TV+ + A+I+ K         I +A++++
Sbjct: 144 DLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHH 203

Query: 245 IV 246
           ++
Sbjct: 204 LL 205


>gi|320533369|ref|ZP_08034060.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134411|gb|EFW26668.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 166

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 100 DLTNAERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 154


>gi|296119033|ref|ZP_06837606.1| DNA-binding response regulator [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968131|gb|EFG81383.1| DNA-binding response regulator [Corynebacterium ammoniagenes DSM
           20306]
          Length = 207

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           D  LT RE E +    +G + +EIA ++ ++  T  NY++S M K   + R
Sbjct: 144 DSPLTEREAEVVNAAGQGGSVEEIAQLVFLAPGTTRNYLSSAMTKIGAQNR 194


>gi|322377555|ref|ZP_08052045.1| DNA-binding response regulator [Streptococcus sp. M334]
 gi|321281320|gb|EFX58330.1| DNA-binding response regulator [Streptococcus sp. M334]
          Length = 199

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193


>gi|307709859|ref|ZP_07646308.1| DNA-binding response regulator [Streptococcus mitis SK564]
 gi|307619408|gb|EFN98535.1| DNA-binding response regulator [Streptococcus mitis SK564]
          Length = 199

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A
Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEA 189


>gi|302526792|ref|ZP_07279134.1| predicted protein [Streptomyces sp. AA4]
 gi|302435687|gb|EFL07503.1| predicted protein [Streptomyces sp. AA4]
          Length = 195

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE + L  +++G  + EIA  L  S  TV   +  I  +   + R+ A+A+A+R  +
Sbjct: 135 LDARERDVLRMVADGHETAEIASALAYSARTVTTIVHDITHRLRLRNRAHAVAFALRQGL 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|256832826|ref|YP_003161553.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256686357|gb|ACV09250.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 226

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E    ++EG ++ EIA  L +   TV  ++ S M KT T  R+
Sbjct: 163 LTDREREITALVAEGFSTAEIATRLYLGEATVKTHLKSAMNKTGTDNRT 211


>gi|226307737|ref|YP_002767697.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226186854|dbj|BAH34958.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 239

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ L  ++ G  + EIA  L +SR TV  ++ +I  KT T +R  A   A +
Sbjct: 177 LSPREIQVLQLVARGAGNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQAAVRAAK 233


>gi|209519712|ref|ZP_03268500.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209499856|gb|EDZ99923.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 215

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    I  G++  EIA  L +S  T++ +   I+ K      +G + YA+R+N+
Sbjct: 149 LSDREFEVFRRIVAGQSVTEIAHELCVSVKTISTHKTRILDKMQMPNENGLVRYAIRHNL 208


>gi|304321066|ref|YP_003854709.1| Two Component Transcriptional Regulator, LuxR family protein
           [Parvularcula bermudensis HTCC2503]
 gi|303299968|gb|ADM09567.1| Two Component Transcriptional Regulator, LuxR family protein
           [Parvularcula bermudensis HTCC2503]
          Length = 226

 Score = 35.4 bits (80), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT R+ E    + E  ++ EIA  LG+S NTV  +I SI  K   + R+   A A+R
Sbjct: 160 KLTPRQKEIFIQLGEEASNQEIADNLGLSINTVRVHIQSIATKLNERNRTKIAALALR 217


>gi|307611008|emb|CBX00632.1| hypothetical protein LPW_23511 [Legionella pneumophila 130b]
          Length = 233

 Score = 35.4 bits (80), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT ++ ECL ++  GK+  EIA IL  S  T+ ++I  +  K    T+S  I  A +
Sbjct: 162 KLTNKQSECLFYLLRGKSMKEIAFILNRSPRTIEDHINLLKYKFNCVTKSQLIDKAFQ 219


>gi|291444045|ref|ZP_06583435.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346992|gb|EFE73896.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 214

 Score = 35.4 bits (80), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+
Sbjct: 148 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 207

Query: 242 RNNI 245
              +
Sbjct: 208 ERGL 211


>gi|258513767|ref|YP_003189989.1| transcriptional regulator, LuxR family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777472|gb|ACV61366.1| transcriptional regulator, LuxR family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 470

 Score = 35.4 bits (80), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +  T  E     +I +G T  EIA  L ISR+TV  ++ +++RK     R   +A  V N
Sbjct: 407 YNFTASEKRVYEFICKGWTDPEIAAHLNISRHTVKFHVRNLLRKAGVSNRKELLAQLVSN 466


>gi|227549492|ref|ZP_03979541.1| possible transcriptional regulator [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078435|gb|EEI16398.1| possible transcriptional regulator [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 240

 Score = 35.4 bits (80), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++  +T+ EIA  L I   TV  Y++ ++ K   + R G   +A  + I
Sbjct: 171 LTPRELEVLERVALAETNAEIAAHLHIGAATVKTYVSRLIAKLGVRDRVGLAVWAHTSGI 230

Query: 246 V 246
           V
Sbjct: 231 V 231


>gi|222054376|ref|YP_002536738.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           FRC-32]
 gi|221563665|gb|ACM19637.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           FRC-32]
          Length = 212

 Score = 35.4 bits (80), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            G++  L+ RE E L  ++ G+T+ +IA   GIS  TV +Y + I+ K
Sbjct: 146 QGRERLLSDREKEVLVKLALGETNGDIAAFFGISVRTVESYFSRIIAK 193


>gi|56478683|ref|YP_160272.1| two-component system response regulator [Aromatoleum aromaticum
           EbN1]
 gi|56314726|emb|CAI09371.1| Two-component system response regulator [Aromatoleum aromaticum
           EbN1]
          Length = 210

 Score = 35.4 bits (80), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 170 ANMFKSYD-VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           AN+    D    G   E LT RE++ +  I  G +  ++ V + +S  TV+ Y   I+ K
Sbjct: 131 ANLLMQMDRAREGAPHEKLTAREMQVMMKIVRGMSLTDVGVQMCLSVKTVSTYRMRILEK 190

Query: 228 TATKTRSGAIAYAVRNNIV 246
            +  + +  + YA+RN ++
Sbjct: 191 LSLSSNAELVQYAMRNGLL 209


>gi|328883517|emb|CCA56756.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 219

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++EG+++DEIA  L IS  T   +I+  + K   + R   +  A  + +
Sbjct: 151 LTARENEVVRLVAEGRSNDEIAAALVISPLTAKTHISRAITKLGLRDRVQLVITAYEHGL 210

Query: 246 V 246
           V
Sbjct: 211 V 211


>gi|229493950|ref|ZP_04387722.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
 gi|229319227|gb|EEN85076.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
          Length = 239

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ L  ++ G  + EIA  L +SR TV  ++ +I  KT T +R  A   A +
Sbjct: 177 LSPREIQVLQLVARGAGNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQAAVRAAK 233


>gi|163839051|ref|YP_001623456.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952527|gb|ABY22042.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 158

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  +  G T+ +IA  LGI+  TV  +++ I  K    +R  A  + V + 
Sbjct: 97  ELTARELEVLRAVGAGWTNQQIANRLGIAETTVKTHVSRIFNKLDLVSRVQAAIFCVEHQ 156

Query: 245 I 245
           +
Sbjct: 157 L 157


>gi|53717636|ref|YP_106110.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|53722543|ref|YP_111528.1| two-component response regulator [Burkholderia pseudomallei K96243]
 gi|76819257|ref|YP_335719.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|52212957|emb|CAH38995.1| putative two-component response regulator [Burkholderia
           pseudomallei K96243]
 gi|52423606|gb|AAU47176.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76583730|gb|ABA53204.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
          Length = 223

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT RE + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R
Sbjct: 155 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYR 212


>gi|315109607|gb|EFT81583.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
          Length = 224

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +
Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|307707707|ref|ZP_07644186.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
 gi|307616205|gb|EFN95399.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
          Length = 199

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193


>gi|290961118|ref|YP_003492300.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260650644|emb|CBG73760.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 215

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+
Sbjct: 149 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 208

Query: 242 RNNI 245
              +
Sbjct: 209 ERGL 212


>gi|295131556|ref|YP_003582219.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|291375244|gb|ADD99098.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313771696|gb|EFS37662.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313810519|gb|EFS48233.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313831559|gb|EFS69273.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313832545|gb|EFS70259.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314974910|gb|EFT19005.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977995|gb|EFT22089.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314984592|gb|EFT28684.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315095475|gb|EFT67451.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327332792|gb|EGE74524.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327448413|gb|EGE95067.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448489|gb|EGE95143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|328762067|gb|EGF75572.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
          Length = 224

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +
Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|311745088|ref|ZP_07718873.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
 gi|126577601|gb|EAZ81821.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
          Length = 269

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           K   LT +E + +  I +G  S EI  +L IS NTV+ +  +I+RK   K
Sbjct: 202 KTVSLTKKEKQIVKMILDGMKSKEIGQVLNISFNTVSTHRKNILRKLGAK 251


>gi|309779367|ref|ZP_07674129.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp.
           5_7_47FAA]
 gi|308921925|gb|EFP67560.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp.
           5_7_47FAA]
          Length = 250

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           E + L W +EGKT+ E+A IL ++   VN +I + + K     ++ A+  A 
Sbjct: 190 ERQTLHWTAEGKTAAEVAAILEMTERNVNFHIRNAVTKLNAANKTHAVVKAA 241


>gi|309775442|ref|ZP_07670445.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916831|gb|EFP62568.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 209

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++L  RE+  +  +++G  + E+A  L +S  TV NY++S++ K   + R+    +  +N
Sbjct: 145 YDLNERELHFIQLVAKGLNNKELAQTLFLSEGTVRNYLSSLLEKLQLRDRTQLAIFYYQN 204


>gi|302547743|ref|ZP_07300085.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302465361|gb|EFL28454.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 227

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE + L  ++ G  + EIA  L IS  TV  ++  I  K    TR+GA+A A
Sbjct: 166 LSERERDILQQLARGLGNREIARALFISEATVKTHLGRIYGKLGVDTRAGAVAVA 220


>gi|256378000|ref|YP_003101660.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922303|gb|ACU37814.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 250

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   L  ++EG T+D IA  L IS  TV+ ++  + RK  T  R
Sbjct: 189 LTQRERTVLVVLAEGLTADAIARRLDISPRTVHRHLQHLYRKLGTTDR 236


>gi|269215500|ref|ZP_06159354.1| transcriptional regulator, LuxR family [Slackia exigua ATCC 700122]
 gi|269130987|gb|EEZ62062.1| transcriptional regulator, LuxR family [Slackia exigua ATCC 700122]
          Length = 484

 Score = 35.4 bits (80), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE E +T ++EG+ S  I   L I++NT   ++ ++ RKT    +   IA+
Sbjct: 413 LSPREQEVMTLLAEGRDSPYIQSTLVIAQNTAKTHMRNVYRKTGVSNKQELIAF 466


>gi|332072188|gb|EGI82674.1| response regulator [Streptococcus pneumoniae GA41301]
          Length = 199

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E+  L  +++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEISVLKGVAQGLSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIA 193


>gi|325832726|ref|ZP_08165489.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|325485865|gb|EGC88326.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 527

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            ++  LT RE E L +++ G+T   IA  L ++ NTV +++ +I  K    TR
Sbjct: 466 AREGGLTEREAEILVYLARGRTKAYIADALFVTENTVRSHVRNIYSKLDVHTR 518


>gi|325270893|ref|ZP_08137480.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324986690|gb|EGC18686.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 246

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT  E E L  I+ G T+ EIA     S +TVN +  +I RK    +   A+ YA+R+ 
Sbjct: 178 KLTKTETEILKEIALGMTTREIAEKRFSSFHTVNTHRKNIFRKLGVNSVHEAMRYAMRSG 237

Query: 245 IV 246
           +V
Sbjct: 238 LV 239


>gi|317482156|ref|ZP_07941179.1| luxR family Bacterial regulatory protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916390|gb|EFV37789.1| luxR family Bacterial regulatory protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 232

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+    +A    I
Sbjct: 171 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 230

Query: 246 V 246
           V
Sbjct: 231 V 231


>gi|296284992|ref|ZP_06862990.1| two component LuxR family transcriptional regulator [Citromicrobium
           bathyomarinum JL354]
          Length = 216

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G +  LT RE + L  I+ G    E+A  L I+  TV  +I ++ RK    + + A+A A
Sbjct: 151 GLEIRLTAREKDILRLIAHGFKRQEVADKLNITVGTVGTHINNVYRKLEVGSNTQAVATA 210

Query: 241 VR 242
            R
Sbjct: 211 NR 212


>gi|296454799|ref|YP_003661943.1| LuxR family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184231|gb|ADH01113.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 185

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+    +A    I
Sbjct: 125 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 184

Query: 246 V 246
           V
Sbjct: 185 V 185


>gi|229193374|ref|ZP_04320323.1| Two-component response regulator ComA [Bacillus cereus ATCC 10876]
 gi|228590088|gb|EEK47958.1| Two-component response regulator ComA [Bacillus cereus ATCC 10876]
          Length = 213

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+E L  +S+G ++ +IA  L +S   V   +  I +K    +RS A+  A+R  I
Sbjct: 149 LTQKELEILESVSKGSSNKQIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGI 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|225020543|ref|ZP_03709735.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679908|ref|ZP_07402718.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
 gi|224946673|gb|EEG27882.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660528|gb|EFM50025.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 232

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE+E L  ++ G T  EIA  L IS  TV  + ++I+RKT    R
Sbjct: 172 LTRRELEVLRLLARGYTYKEIAGQLFISIKTVETHASNILRKTQQSNR 219


>gi|315604390|ref|ZP_07879456.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314096|gb|EFU62147.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 218

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A
Sbjct: 147 HEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAA 206

Query: 239 Y 239
           +
Sbjct: 207 W 207


>gi|315505714|ref|YP_004084601.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315412333|gb|ADU10450.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 221

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++G ++ EIA  + ++  TV  ++  I+ K   + R  A+  A  + 
Sbjct: 156 QLTDREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESG 215

Query: 245 IV 246
           +V
Sbjct: 216 LV 217


>gi|227503398|ref|ZP_03933447.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227075901|gb|EEI13864.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 253

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  ++ G ++ EI+    +S  TV  ++  ++ KT ++ R  A+ YA  + 
Sbjct: 181 ELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLYAYTHG 240

Query: 245 IV 246
           +V
Sbjct: 241 VV 242


>gi|297194849|ref|ZP_06912247.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152490|gb|EDY64595.2| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 224

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+
Sbjct: 158 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 217

Query: 242 RNNI 245
              +
Sbjct: 218 ERGL 221


>gi|209517666|ref|ZP_03266503.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501841|gb|EEA01860.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 210

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G++ +EIA    +S  T++ +   +M+K      +  I YA+R+ +
Sbjct: 148 LSDREFQVLQMLAAGRSINEIAQACSLSAKTISTHKMRLMQKLGLSNNAEVIRYAIRHGM 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|149203886|ref|ZP_01880855.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
 gi|149143003|gb|EDM31045.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
          Length = 202

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  I  GK++ EIA  L I   TV  ++ ++ RK   K R+ A   A
Sbjct: 142 LTPRETDVLVGILHGKSNKEIARDLDIQEVTVKLHLKTLSRKLGAKNRTHAAMIA 196


>gi|146338352|ref|YP_001203400.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146191158|emb|CAL75163.1| putative transcriptional regulatory protein, LuxR family
           [Bradyrhizobium sp. ORS278]
          Length = 269

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT  +++ L  ++ G T+ +IA+  GIS NTV   +A++ R      R+    +A RN 
Sbjct: 206 KLTRSQLDILGHLAIGATNRDIAIARGISINTVKTQVAALTRTLKFSNRTQTALFAARNG 265


>gi|54023878|ref|YP_118120.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54015386|dbj|BAD56756.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 207

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT +E + L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   A R
Sbjct: 146 DLTEQERKLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVLATR 203


>gi|302038390|ref|YP_003798712.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300606454|emb|CBK42787.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 215

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G+T  +IA  + +S  T++ Y A I+ K   K  +    YA+++ +
Sbjct: 154 LSDREYEVLCLIASGQTVSDIAESIHLSVTTISTYRARILDKMNLKNNAELTRYALQHGL 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|28871951|ref|NP_794570.1| DNA binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|301383654|ref|ZP_07232072.1| DNA binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302063177|ref|ZP_07254718.1| DNA binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131267|ref|ZP_07257257.1| DNA binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28855204|gb|AAO58265.1| DNA binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331014726|gb|EGH94782.1| DNA binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 260

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 189 KLSRRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 245


>gi|51894231|ref|YP_076922.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857920|dbj|BAD42078.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 211

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 36/80 (45%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  Y     +S      +   L  +++  +  +++G T+ EIA  + +S  TV  Y+A  
Sbjct: 130 VVGYLMQQMRSPSADKEERIPLNRQQLAIIRLVAQGYTNREIAERMFLSEKTVKGYLAEA 189

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           MR+   K R  A   A +N 
Sbjct: 190 MRRMGVKNRVEAAMVASKNG 209


>gi|119025065|ref|YP_908910.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764649|dbj|BAF38828.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 221

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + ++  ++G    EIA  L IS +TV  ++  I++K   KT   A+A  VR++
Sbjct: 161 LTVREEQIISLCADGMLDREIAERLDISESTVRKHMQGILKKLNCKTARQAVALWVRSH 219


>gi|319440533|ref|ZP_07989689.1| putative transcription regulator [Corynebacterium variabile DSM
           44702]
          Length = 146

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT REVE +  ++ G T  E+A  L IS  TV  +++ ++RKT    R
Sbjct: 85  DLTPREVEVMRLLARGYTYREMAKRLFISVKTVETHVSHVLRKTQQTNR 133


>gi|302560214|ref|ZP_07312556.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477832|gb|EFL40925.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 231

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT REVE L  ++EG+ +  IA  +GI+ +T   ++  ++ K    +R
Sbjct: 164 LTPREVEVLVRVAEGEDTRLIAAGMGIAPSTARTHVQRVLMKLGVGSR 211


>gi|256378341|ref|YP_003102001.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922644|gb|ACU38155.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 261

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           + LT RE   L  +++G T D IA  L IS  TV+  +  + RK  T+T
Sbjct: 193 YRLTRREATVLEGVAQGLTDDTIADRLAISPRTVHRRLRHVSRKLGTET 241


>gi|311234756|gb|ADP87610.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris RCH1]
          Length = 250

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L +++EG  + EIA +L +S  TV  + A+ M K    + +   A+A R  +
Sbjct: 179 LTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRAFAQRQGL 238


>gi|168700050|ref|ZP_02732327.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 219

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE E     + G  + EIA  L +S  TV  Y A  + K   K+R+  ++YA +  
Sbjct: 155 ELSEREAEVARLTAAGHGNKEIAARLELSVKTVETYRARALEKLGLKSRAELVSYAFQQG 214


>gi|167906527|ref|ZP_02493732.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 255

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 175 SYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           SY +   +D  ELT RE + L +++  K + +IA ILG+S  T+  Y+ ++  K +  ++
Sbjct: 142 SYRIDSPRDALELTERERQVLFFLARNKMAKDIANILGLSARTIEQYMENLRCKFSASSK 201

Query: 234 SGAIAYAV 241
           +  I  A 
Sbjct: 202 NELIDLAA 209


>gi|50843473|ref|YP_056700.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289425764|ref|ZP_06427519.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289427938|ref|ZP_06429642.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|50841075|gb|AAT83742.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289153870|gb|EFD02576.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289158821|gb|EFD07021.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|313763833|gb|EFS35197.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313793774|gb|EFS41805.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803088|gb|EFS44296.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808301|gb|EFS46772.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313813848|gb|EFS51562.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313817004|gb|EFS54718.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818081|gb|EFS55795.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820939|gb|EFS58653.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823990|gb|EFS61704.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827075|gb|EFS64789.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829809|gb|EFS67523.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313839286|gb|EFS77000.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916571|gb|EFS80402.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918956|gb|EFS82787.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314920977|gb|EFS84808.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926967|gb|EFS90798.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932382|gb|EFS96213.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956691|gb|EFT00943.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959601|gb|EFT03703.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961786|gb|EFT05887.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964770|gb|EFT08870.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968723|gb|EFT12821.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314979700|gb|EFT23794.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314988252|gb|EFT32343.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990339|gb|EFT34430.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079262|gb|EFT51265.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082275|gb|EFT54251.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083754|gb|EFT55730.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087395|gb|EFT59371.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089812|gb|EFT61788.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315100153|gb|EFT72129.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102475|gb|EFT74451.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315107818|gb|EFT79794.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327326525|gb|EGE68313.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327335184|gb|EGE76894.1| two-component system response regulator [Propionibacterium acnes
           HL097PA1]
 gi|327449654|gb|EGE96308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455799|gb|EGF02454.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456107|gb|EGF02762.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327457944|gb|EGF04599.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757114|gb|EGF70730.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757308|gb|EGF70924.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757492|gb|EGF71108.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|332676424|gb|AEE73240.1| putative two-component response regulator [Propionibacterium acnes
           266]
          Length = 224

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +
Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|318057452|ref|ZP_07976175.1| response regulator receiver [Streptomyces sp. SA3_actG]
          Length = 151

 Score = 35.4 bits (80), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + GR+++ L +++EG T++EIA  LG+  +TV  +   +      + R+ A+A
Sbjct: 81  VAGRQLQVLRFLAEGLTAEEIAAQLGLKPSTVIEHCTRLYATLGARHRAHAVA 133


>gi|284029107|ref|YP_003379038.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808400|gb|ADB30239.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 216

 Score = 35.4 bits (80), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +  G +++EI   L +S  T   Y++ ++ K   + RS  +  A +  +
Sbjct: 155 LTARELDILAHVGRGLSNEEIGQALFLSPETARTYVSRLLAKLGVRDRSQLVVLAHKAGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|213968029|ref|ZP_03396175.1| DNA binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|213927372|gb|EEB60921.1| DNA binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
          Length = 264

 Score = 35.4 bits (80), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+  A+A++
Sbjct: 193 KLSRRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLALAFS 249


>gi|254382632|ref|ZP_04997990.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194341535|gb|EDX22501.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 215

 Score = 35.4 bits (80), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+
Sbjct: 149 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 208

Query: 242 RNNI 245
              +
Sbjct: 209 ERGL 212


>gi|170692985|ref|ZP_02884146.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170141983|gb|EDT10150.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 210

 Score = 35.4 bits (80), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +F++Y         L+ RE + L  ++ GK+ ++IA    +S  T++ +   +M+K    
Sbjct: 134 VFETYSGDAPPHEILSDREFQVLQMLALGKSLNDIADAFALSAKTISTHKMRLMQKLGLA 193

Query: 232 TRSGAIAYAVRNNIV 246
             +  I YA+R+ +V
Sbjct: 194 NNAELIRYAIRHGLV 208


>gi|27376291|ref|NP_767820.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|8708916|gb|AAF78807.1| two-component system transcriptional regulator ElmR [Bradyrhizobium
           japonicum]
 gi|27349431|dbj|BAC46445.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 214

 Score = 35.4 bits (80), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 33/73 (45%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +A  F    +      ++T RE+E L  +  G    E+A  LGIS  TV N  + + +K 
Sbjct: 137 EAVTFSGAAIKANPASQMTPRELEILRLLGRGDKIVEVAEALGISYKTVANTTSLLKQKL 196

Query: 229 ATKTRSGAIAYAV 241
             K  S  I  AV
Sbjct: 197 GAKNHSDLIRIAV 209


>gi|148264823|ref|YP_001231529.1| two component LuxR family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146398323|gb|ABQ26956.1| two component transcriptional regulator, LuxR family [Geobacter
           uraniireducens Rf4]
          Length = 214

 Score = 35.4 bits (80), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L   +EG  + EIA  LG+S   +  +  +I +K   K+ +    YAVR  +
Sbjct: 151 LTKREREVLKLTAEGYNTKEIAFTLGVSIKMIEIHRMNIRKKLGLKSIAQLATYAVRIGL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|311897240|dbj|BAJ29648.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 200

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE + L   ++G    EIA    +S  TV NY++S   K   + R  A+  A
Sbjct: 137 DSPLTPRETDVLELAADGSPVAEIAERAALSPGTVRNYLSSAAGKLGAENRHAAVRIA 194


>gi|306836360|ref|ZP_07469338.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304567720|gb|EFM43307.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 253

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  ++ G ++ EI+    +S  TV  ++  ++ KT ++ R  A+ YA  + 
Sbjct: 181 ELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLYAYTHG 240

Query: 245 IV 246
           +V
Sbjct: 241 VV 242


>gi|227505091|ref|ZP_03935140.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198294|gb|EEI78342.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 218

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +T RE+E L  I+ G T+ EIA  L ++  TV  +++S+M K   + R
Sbjct: 158 VTRRELEVLRLITSGATNREIAQELVLAETTVKTHVSSLMSKLQARDR 205


>gi|149907604|ref|ZP_01896351.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
 gi|149809274|gb|EDM69203.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
          Length = 197

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ R++  L  +++GK++ ++A  L IS  TV  +  SIM+    KT +  I YA+ + 
Sbjct: 135 KLSSRQISVLQLLAQGKSARQVADELFISPRTVEFHKYSIMKLVNAKTSAELIQYALNHG 194

Query: 245 IV 246
           ++
Sbjct: 195 LM 196


>gi|320011831|gb|ADW06681.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 520

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 175 SYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           + D+H  +D   LT RE+E L  ++ G ++ E+A  L ++  TV  ++A ++ K   + R
Sbjct: 438 TADLH--RDLASLTPRELEVLGLLARGLSNAELAARLHLAETTVKTHVARVLAKLGLRDR 495

Query: 234 SGAIAYAVRNNIV 246
             A+  A    +V
Sbjct: 496 VQAVIVAYETGLV 508


>gi|228908960|ref|ZP_04072790.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200]
 gi|228850682|gb|EEM95506.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200]
          Length = 451

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +ELT RE+E L  +++G     IA  L +S  TV NY ++   K     +  A+  A+  
Sbjct: 388 YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALEI 447

Query: 244 NIV 246
            I+
Sbjct: 448 GII 450


>gi|83952011|ref|ZP_00960743.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius nubinhibens ISM]
 gi|83837017|gb|EAP76314.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius nubinhibens ISM]
          Length = 252

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E L W+ +GKT  +IA++L ++  TV  ++       + +T + A+  A   N 
Sbjct: 186 LTARQREVLGWVGDGKTVQDIALLLNLTPATVEKHLRLARDALSVETTAQAVLKASFQNQ 245

Query: 246 V 246
           +
Sbjct: 246 I 246


>gi|116618242|ref|YP_818613.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097089|gb|ABJ62240.1| DNA-binding response regulator (Rec-wHTH domains) [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 210

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D+ L+ +E++ L+ ++ G     IA+ + +S  T+ + +  I  K    T   A+A AV
Sbjct: 143 QDYNLSEKELKILSRVARGVKIKLIALEMHLSERTIKSNLTDIYIKMNVSTGVQAVALAV 202

Query: 242 RNNIV 246
           +NN++
Sbjct: 203 KNNLI 207


>gi|302527637|ref|ZP_07279979.1| predicted protein [Streptomyces sp. AA4]
 gi|302436532|gb|EFL08348.1| predicted protein [Streptomyces sp. AA4]
          Length = 316

 Score = 35.4 bits (80), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE++ +  +S G +++ I+  LGI+  TV +++ S + K     R+    +A+ +++
Sbjct: 246 LTGRELDVVGLVSRGWSNERISSALGITVRTVRSHVESSLVKLDCPNRTALARHALEHDL 305


>gi|162146990|ref|YP_001601451.1| two-component system regulatory protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544054|ref|YP_002276283.1| two component LuxR family transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785567|emb|CAP55138.1| putative two-component system regulatory protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531731|gb|ACI51668.1| two component transcriptional regulator, LuxR family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 201

 Score = 35.4 bits (80), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK--TA 229
           M  ++D   G D  LT RE + L    EG ++ +IA  LG+S  TV NY+++   K   A
Sbjct: 130 MAAAWDA--GAD-PLTARERDALRLAEEGLSNKDIARRLGLSPGTVRNYLSTAAGKLNAA 186

Query: 230 TKTRSGAIAYA 240
            +  +G IA A
Sbjct: 187 NRIEAGRIARA 197


>gi|119511948|ref|ZP_01631045.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463368|gb|EAW44308.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 69

 Score = 35.4 bits (80), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I+ G  + EI+  L IS  TV N++ +I+ +   + R+ A   A
Sbjct: 3   ELTPREKEVLRLIAVGANNREISQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 58


>gi|1498492|gb|AAC45136.1| ORF1; homolog to response regulator of a putative signal
           transduction system [Streptomyces lividans]
          Length = 225

 Score = 35.4 bits (80), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +D + LT RE+E L  +++G ++ E+A  L +S  TV  ++  I+ K   + R  A+  A
Sbjct: 154 RDLQTLTPRELEVLQLLAQGLSNAELAERLYLSETTVKTHVGRILAKLQLRDRVQAVVTA 213

Query: 241 VRNNIV 246
               +V
Sbjct: 214 YETGLV 219


>gi|312137865|ref|YP_004005201.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325673369|ref|ZP_08153061.1| response regulator [Rhodococcus equi ATCC 33707]
 gi|311887204|emb|CBH46513.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325555959|gb|EGD25629.1| response regulator [Rhodococcus equi ATCC 33707]
          Length = 212

 Score = 35.4 bits (80), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I+ G  +  I+  L +S  TV N++++++ K     RS AI  A
Sbjct: 150 ELTEREHEVLDLIARGHDNATISRRLVLSPKTVRNHVSNVLTKLGVPDRSTAIVRA 205


>gi|293400727|ref|ZP_06644872.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305753|gb|EFE46997.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 205

 Score = 35.4 bits (80), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 31/51 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ++L  RE + ++ ++ G  + EIA  L +S  TV NY+++++ K   + R+
Sbjct: 144 YDLNDREQQFISLVANGLNNKEIAETLFLSEGTVRNYLSNLLDKLGLRDRT 194


>gi|254516347|ref|ZP_05128406.1| putative transcriptional regulator [gamma proteobacterium NOR5-3]
 gi|219674770|gb|EED31137.1| putative transcriptional regulator [gamma proteobacterium NOR5-3]
          Length = 934

 Score = 35.4 bits (80), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++   + +I   L IS +TV +++  + +K     R  AIA A+R  
Sbjct: 866 DLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKAMRVG 925

Query: 245 IV 246
           ++
Sbjct: 926 LL 927


>gi|282854807|ref|ZP_06264141.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282581953|gb|EFB87336.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314967298|gb|EFT11397.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981731|gb|EFT25824.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092496|gb|EFT64472.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
          Length = 224

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +
Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|218233335|ref|YP_002369918.1| competence protein A [Bacillus cereus B4264]
 gi|228961368|ref|ZP_04122983.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229153297|ref|ZP_04281475.1| Two-component response regulator ComA [Bacillus cereus m1550]
 gi|218161292|gb|ACK61284.1| competence protein A [Bacillus cereus B4264]
 gi|228629901|gb|EEK86552.1| Two-component response regulator ComA [Bacillus cereus m1550]
 gi|228798326|gb|EEM45324.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 213

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+E L  +S+G ++ +IA  L +S   V   +  I +K    +RS A+  A+R  I
Sbjct: 149 LTQKELEILESVSKGSSNKQIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGI 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|153006198|ref|YP_001380523.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029771|gb|ABS27539.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 232

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I EG  ++E A  LGI+  TV N++  I  K     R   + +A  + +
Sbjct: 168 LTPREREIVALIGEGLRNEEAARRLGITEKTVRNHLTLIFDKVGVSGRLELLVWAYEHGL 227

Query: 246 V 246
           V
Sbjct: 228 V 228


>gi|329768816|ref|ZP_08260247.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325]
 gi|328839589|gb|EGF89164.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325]
          Length = 199

 Score = 35.0 bits (79), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ +E   L  + EG ++ EI+  L +S  T+ NYI++I+ K   K R+ A+  A
Sbjct: 139 LSNQEKILLAKVKEGLSNKEISSELYLSEGTIRNYISNILTKLNCKNRTEAVKKA 193


>gi|309799510|ref|ZP_07693740.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308116866|gb|EFO54312.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 199

 Score = 35.0 bits (79), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +EV  L  +++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A
Sbjct: 139 LTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTNILSKLNASNRTEAAKTA 193


>gi|302542997|ref|ZP_07295339.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460615|gb|EFL23708.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 231

 Score = 35.0 bits (79), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT REVE L  ++EG+ +  IA  +GI+ +T   ++  ++ K    +R
Sbjct: 156 LTPREVEVLMRVAEGEDTRLIAAGMGIAPSTARTHVQRVLMKLGVGSR 203


>gi|227494681|ref|ZP_03924997.1| response regulator DegU family protein [Actinomyces coleocanis DSM
           15436]
 gi|226831863|gb|EEH64246.1| response regulator DegU family protein [Actinomyces coleocanis DSM
           15436]
          Length = 216

 Score = 35.0 bits (79), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A
Sbjct: 145 HGDPTADLTPAERKVLNLIGDGLSNREIGEKLGVAEKTVKNHITSLLAKMGLQRRTQVAA 204

Query: 239 Y 239
           +
Sbjct: 205 W 205


>gi|317475733|ref|ZP_07934992.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908116|gb|EFV29811.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 70

 Score = 35.0 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T RE + L  +++G  + EIA +LGIS NTV  +   ++ K   K     +  AV
Sbjct: 8   TKREQDVLQAVAKGLNTHEIAHLLGISENTVETFRKKLLSKFGAKNAIDLVVKAV 62


>gi|319795895|ref|YP_004157535.1| ATP-dependent transcriptional regulator malt-like, luxr family
           [Variovorax paradoxus EPS]
 gi|315598358|gb|ADU39424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Variovorax paradoxus EPS]
          Length = 914

 Score = 35.0 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+  L  ++EG +++ +A  L +S +TV  ++ +I  K   K+R+ A+A A +  +
Sbjct: 853 LTRKEIRVLQLLAEGYSNNAMAEKLFVSDSTVRTHLRNINMKLDAKSRTQAVAIARKVGV 912

Query: 246 V 246
           +
Sbjct: 913 I 913


>gi|300698157|ref|YP_003748818.1| nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           CFBP2957]
 gi|299074881|emb|CBJ54450.1| Nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           CFBP2957]
          Length = 217

 Score = 35.0 bits (79), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +  +  G ++ EIA  L ++ +TV  ++ +I++K    +R     YAV N +
Sbjct: 155 LTSRERDIVQGLVRGDSNKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214


>gi|288958558|ref|YP_003448899.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910866|dbj|BAI72355.1| two-component response regulator [Azospirillum sp. B510]
          Length = 213

 Score = 35.0 bits (79), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + LT R+ E L  +  GK++ +IA  LG+S  TV  ++ +I +    K R+
Sbjct: 152 YGLTQRQREVLECLRLGKSNKQIAYELGLSEGTVKIHVTAIFKSLGVKNRT 202


>gi|269128746|ref|YP_003302116.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313704|gb|ACZ00079.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 220

 Score = 35.0 bits (79), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE + L  + +G ++ EIA  L +   TV  Y+++I+++   + R  A   A    +
Sbjct: 158 LTGRERDVLGLLGQGLSNAEIAARLHLVEGTVKGYVSTILQRLNVENRVQAAILAYEAGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|225350985|ref|ZP_03742008.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158441|gb|EEG71683.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 228

 Score = 35.0 bits (79), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 164 LLAAYQ----ANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           +L+A+Q    A M  S    +H  +   L+ RE E +  I+ G T  E+A  L IS  TV
Sbjct: 140 VLSAFQNGSPAGMGGSASGPIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISIKTV 199

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++S++RK     R+    +A    IV
Sbjct: 200 ETHVSSVLRKLQLSNRTELTRWAADRRIV 228


>gi|124383175|ref|YP_001025881.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|254194028|ref|ZP_04900460.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254200975|ref|ZP_04907340.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254359059|ref|ZP_04975331.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|147748587|gb|EDK55662.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|148028246|gb|EDK86206.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|169650779|gb|EDS83472.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|261827167|gb|ABM99233.2| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
          Length = 264

 Score = 35.0 bits (79), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT RE + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R
Sbjct: 196 ELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYR 253


>gi|317488846|ref|ZP_07947376.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911920|gb|EFV33499.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 503

 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            ++  LT RE E L +++ G+T   IA  L ++ NTV +++ +I  K    TR
Sbjct: 442 AREGGLTEREAEILVYLARGRTKAYIADALFVTENTVRSHVRNIYSKLDVHTR 494


>gi|239981289|ref|ZP_04703813.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
 gi|291453147|ref|ZP_06592537.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
 gi|291356096|gb|EFE82998.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
          Length = 211

 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++EG ++  I+  L +S+ TV +++  I  K    +R+ A+A A+   +
Sbjct: 149 LSRRETEVLGLVAEGMSNLRISERLHLSQATVKSHLVHIYAKLGVDSRTAAVAAALERGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|146280183|ref|YP_001170340.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558424|gb|ABP73035.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 207

 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ +E+E L  ++ G  + EIA  LGIS  TV  ++ SI  K   K R+ A
Sbjct: 147 LSPKELEVLRCLTNGLMNKEIAQTLGISEVTVKMHVRSICAKMNVKNRTQA 197


>gi|242280780|ref|YP_002992909.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242123674|gb|ACS81370.1| transcriptional regulator, LuxR family [Desulfovibrio salexigens
           DSM 2638]
          Length = 405

 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 181 GKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           G  FE     LT REVE   +I  GK+++ I  +L I+ +TV  +  +I RK   + +  
Sbjct: 334 GDQFEELLLKLTPREVEICRYIEAGKSTERIGELLSITADTVRTHRKNIRRKLGLQGKRV 393

Query: 236 AIAYAVRNNI 245
           ++   +++ I
Sbjct: 394 SLISYLKHQI 403


>gi|331694595|ref|YP_004330834.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|331696119|ref|YP_004332358.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949284|gb|AEA22981.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950808|gb|AEA24505.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 214

 Score = 35.0 bits (79), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 178 VHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +  G+D E      L+ +E   L  +++G T+ +I   L ++  TV NY++S++ K    
Sbjct: 139 LRRGEDTEDPRYAGLSPQERRILDLVADGLTNKQIGAELFLAEKTVKNYVSSLLHKLGFS 198

Query: 232 TRSGAIAYAVR 242
            R+ A  YA R
Sbjct: 199 RRTEAAVYAER 209


>gi|260599500|ref|YP_003212071.1| transcriptional regulatory protein entR [Cronobacter turicensis
           z3032]
 gi|260218677|emb|CBA34025.1| Transcriptional regulatory protein entR [Cronobacter turicensis
           z3032]
          Length = 201

 Score = 35.0 bits (79), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE   L W SEG +++EIA  +GI+  TV  Y  +I  K     R
Sbjct: 141 LTLREERILEWWSEGMSNEEIARKMGIAVKTVYTYKRNIRMKLGADNR 188


>gi|253998833|ref|YP_003050896.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200921|ref|YP_004039579.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985512|gb|ACT50369.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312440237|gb|ADQ84343.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 210

 Score = 35.0 bits (79), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    ++ G ++ EIA  L IS  TV+ Y   I+ K + KT +    YA++N +
Sbjct: 149 LSDREFQVFFKLAGGLSATEIADELCISVKTVSTYRTRILEKMSLKTNADLTYYAIKNGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|239940608|ref|ZP_04692545.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987090|ref|ZP_04707754.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 233

 Score = 35.0 bits (79), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+
Sbjct: 167 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 226

Query: 242 RNNI 245
              +
Sbjct: 227 ERGL 230


>gi|256374257|ref|YP_003097917.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255918560|gb|ACU34071.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 209

 Score = 35.0 bits (79), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E   L+ I EG ++ +IA  L ++  TV N++ +++ K   + R+ A A+  R  
Sbjct: 150 LTEQERRVLSLIGEGLSNRQIAERLFVAEKTVKNHVTAVLSKLGMERRTQAAAWVARRG 208


>gi|170747693|ref|YP_001753953.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654215|gb|ACB23270.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 220

 Score = 35.0 bits (79), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E +  + +G  + +IA  LGIS  TV  +  ++MR    K  +G++A  VR  
Sbjct: 157 LTAREAEVMAHVVKGLLNKQIAYALGISEITVKIHRGNVMR----KMEAGSVADLVRKT 211


>gi|291006817|ref|ZP_06564790.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 215

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+  L  ++ G ++ +I   L IS  T   ++ +IMRK    TR+ A+  A +  
Sbjct: 154 ELTERELGVLRLLAAGSSNRQIGGQLYISETTAKFHVRNIMRKLDVSTRAEAVYEASKRG 213

Query: 245 IV 246
           ++
Sbjct: 214 LI 215


>gi|261254003|ref|ZP_05946576.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP
           102891]
 gi|260937394|gb|EEX93383.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP
           102891]
          Length = 215

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +  G ++ +IA  + IS  TV +++  I +K + K R  A A+A ++
Sbjct: 154 DLTTREIQILRCLMVGSSNIQIAEDMFISEFTVKSHLQKIFKKLSVKNRVQAAAWAKQH 212


>gi|189461600|ref|ZP_03010385.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136]
 gi|189431710|gb|EDV00695.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136]
          Length = 202

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+D  L+ RE E +  +  G T+ EIA  L IS +TV  +  +I RK    + +G   YA
Sbjct: 129 GQD-TLSQREKEIIGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIHSAAGLTIYA 187

Query: 241 VRNNIV 246
           + N +V
Sbjct: 188 IVNKLV 193


>gi|182413518|ref|YP_001818584.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840732|gb|ACB74984.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 213

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE   L   +EG ++ EIA  L IS  T   +  +++RK   +T++  + +A+R  +
Sbjct: 151 ITPRERMVLQLAAEGASNSEIAEKLFISPRTAETHRTNLLRKLGLQTQTDLVRFAIRKGL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|320532105|ref|ZP_08032984.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135680|gb|EFW27749.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 226

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E +  ++EG  + E A  L +S  TV N+I++I+ K   + R+
Sbjct: 165 LTDREYEVVEAVAEGLDNAEAAARLFVSEGTVRNHISAILAKLGLRNRT 213


>gi|284044784|ref|YP_003395124.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949005|gb|ADB51749.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 429

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L  RE+E L  ++ G  + +IA  L I+ +TV  ++A+I+RK    +R 
Sbjct: 370 LNARELEVLAELARGGRNRQIAEALAITPHTVKFHVANILRKLGVSSRG 418


>gi|182435087|ref|YP_001822806.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463603|dbj|BAG18123.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 213

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  + EG ++  I+  L +S+ TV +++  I  K    +R+ A+A A    +
Sbjct: 151 LTRRELEVLQLVGEGLSNLRISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|170749677|ref|YP_001755937.1| response regulator FixJ [Methylobacterium radiotolerans JCM 2831]
 gi|170656199|gb|ACB25254.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 205

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +  GK +  I + LGIS  TV  Y A++M    +K ++G+++  VR  
Sbjct: 141 ELTERERQVLEGLVAGKANKVIGLDLGISPRTVEIYRANVM----SKLQAGSLSELVRMA 196

Query: 245 IV 246
           ++
Sbjct: 197 LI 198


>gi|154493926|ref|ZP_02033246.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC
           43184]
 gi|154086186|gb|EDN85231.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC
           43184]
          Length = 202

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N +
Sbjct: 135 LSSREKEIVICVVKGMTNREIADRLYLSTHTVITHRRNIARKLQVHSASGLTVYAIVNKL 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|326381846|ref|ZP_08203539.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199272|gb|EGD56453.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 210

 Score = 35.0 bits (79), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E +  +  G T+ EIA  L IS  TV +++  I  K    +RS  +A A +  +
Sbjct: 149 LTARELEVVVLLDAGLTNREIAKRLFISEATVKSHLVHIFDKLDVTSRSKVVATARQRGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|229490268|ref|ZP_04384110.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229322800|gb|EEN88579.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 224

 Score = 35.0 bits (79), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E +T ++ G ++DEIA  L IS  T   ++   M K   + R+  +  A +  
Sbjct: 156 QLTPRELEVVTLVAMGMSNDEIAAELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCG 215

Query: 245 IV 246
           +V
Sbjct: 216 LV 217


>gi|115358524|ref|YP_775662.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria AMMD]
 gi|170703717|ref|ZP_02894440.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|171323018|ref|ZP_02911678.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|172063277|ref|YP_001810928.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|115283812|gb|ABI89328.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria AMMD]
 gi|170131372|gb|EDS99976.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|171091598|gb|EDT37191.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171995794|gb|ACB66712.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
          Length = 215

 Score = 35.0 bits (79), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVFRRIAAGQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|255971090|ref|ZP_05421676.1| predicted protein [Enterococcus faecalis T1]
 gi|255962108|gb|EET94584.1| predicted protein [Enterococcus faecalis T1]
          Length = 202

 Score = 35.0 bits (79), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  +S+G     IA  + I+  T+ NY+ SI  K  T +   ++  A+   I
Sbjct: 137 ITPREKEVLRILSQGVKQSAIASKMNITERTLRNYVYSINEKLGTNSAIASVVKAIELGI 196

Query: 246 V 246
           +
Sbjct: 197 I 197


>gi|239995139|ref|ZP_04715663.1| putative LuxR-family transcriptional regulator [Alteromonas
           macleodii ATCC 27126]
          Length = 198

 Score = 35.0 bits (79), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L+ I +G ++ EIA   GI+  TV  Y+ +++ K   K R
Sbjct: 134 LTNREKDVLSGILDGLSNKEIAREHGITERTVKEYVGTLLHKFEAKDR 181


>gi|171909690|ref|ZP_02925160.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 212

 Score = 35.0 bits (79), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L+ RE E +  ++ G    EIA  LGI   TV  Y+ +I  K   K R+ A+A
Sbjct: 152 KLSPREGEVIELLASGYIYKEIADKLGIGTETVRTYVKNICVKLRVKNRTEAVA 205


>gi|187920901|ref|YP_001889933.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187719339|gb|ACD20562.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 210

 Score = 35.0 bits (79), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G++ +EIA    +S  T++ +   +M+K      +  I YAVR+ +
Sbjct: 148 LSDREFQVLQMLAAGQSINEIAESCSLSAKTISTHKMRLMQKLGLNNNAELIRYAVRHGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|317131807|ref|YP_004091121.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469786|gb|ADU26390.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
          Length = 225

 Score = 35.0 bits (79), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 181 GKDFELTGR-EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           GK  EL  R E + +  +  G ++ EIA  L +S  TV NY+++I+ K   + R+    +
Sbjct: 151 GKTLELLSRTEKQVVREVGRGLSNKEIARKLNLSEGTVRNYLSTILSKLELRDRTQLAIW 210

Query: 240 AVRNNIV 246
           A ++ I+
Sbjct: 211 ATQSGIL 217


>gi|291614280|ref|YP_003524437.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584392|gb|ADE12050.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 219

 Score = 35.0 bits (79), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG+ +  IA  L +S  TV  + +++MRK      +   +YA+   +
Sbjct: 156 LTLREREVLKLIAEGQGNKHIASYLCVSVKTVEKHRSNLMRKLNLHNAAVLTSYAIEKGM 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|228910956|ref|ZP_04074764.1| Two-component response regulator ComA [Bacillus thuringiensis IBL
           200]
 gi|228848611|gb|EEM93457.1| Two-component response regulator ComA [Bacillus thuringiensis IBL
           200]
          Length = 213

 Score = 35.0 bits (79), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+E L  +S+G ++ +IA  L +S   V   +  I +K    +RS A+  A+R  I
Sbjct: 149 LTQKELEILESVSKGSSNKQIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGI 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|226307167|ref|YP_002767127.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226186284|dbj|BAH34388.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 224

 Score = 35.0 bits (79), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E +T ++ G ++DEIA  L IS  T   ++   M K   + R+  +  A +  
Sbjct: 156 QLTPRELEVVTLVALGMSNDEIAAELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCG 215

Query: 245 IV 246
           +V
Sbjct: 216 VV 217


>gi|260655487|ref|ZP_05860975.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi
           E3_33 E1]
 gi|260629935|gb|EEX48129.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi
           E3_33 E1]
          Length = 212

 Score = 35.0 bits (79), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   + G +S E+A  L IS  TV  ++AS+  K     ++ A+  A+++ +
Sbjct: 145 LSPREREVLLCAARGLSSKEVAAQLYISERTVQTHLASVYDKLGAHNKTEAMLLALKHGL 204

Query: 246 V 246
           +
Sbjct: 205 M 205


>gi|228942278|ref|ZP_04104817.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228975207|ref|ZP_04135765.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981845|ref|ZP_04142140.1| Two-component response regulator ComA [Bacillus thuringiensis
           Bt407]
 gi|228777957|gb|EEM26229.1| Two-component response regulator ComA [Bacillus thuringiensis
           Bt407]
 gi|228784486|gb|EEM32507.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817322|gb|EEM63408.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942934|gb|AEA18830.1| two-component response regulator comA [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 213

 Score = 35.0 bits (79), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+E L  +S+G ++ +IA  L +S   V   +  I +K    +RS A+  A+R  I
Sbjct: 149 LTQKELEILESVSKGSSNKQIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGI 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|167646930|ref|YP_001684593.1| two component LuxR family transcriptional regulator [Caulobacter
           sp. K31]
 gi|167349360|gb|ABZ72095.1| two component transcriptional regulator, LuxR family [Caulobacter
           sp. K31]
          Length = 207

 Score = 35.0 bits (79), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTGRE + L  +++G  +  IA  LGIS  TV  + A++M K   ++ S A+  A
Sbjct: 143 LTGREQDVLKGLAQGLPNKTIAYDLGISPRTVEVHRANLMSKLKVRSLSEALRIA 197


>gi|325068498|ref|ZP_08127171.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
          Length = 205

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 139 DLTNAERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 193


>gi|306834744|ref|ZP_07467810.1| LuxR family DNA-binding response regulator [Corynebacterium
           accolens ATCC 49726]
 gi|304569381|gb|EFM44880.1| LuxR family DNA-binding response regulator [Corynebacterium
           accolens ATCC 49726]
          Length = 205

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E L  ++ G ++ E+A  L IS  TV  ++  I +K    TR+ A+  A
Sbjct: 145 LSTRELEILRALATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVA 199


>gi|288802576|ref|ZP_06408015.1| transcriptional regulator [Prevotella melaninogenica D18]
 gi|288335104|gb|EFC73540.1| transcriptional regulator [Prevotella melaninogenica D18]
          Length = 214

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E E L  I+ G T+ EIA     S +TVN +  +I RK        AI YA+R+ +
Sbjct: 147 LTKTETEILKEIALGATTREIADKRFSSFHTVNTHRKNIFRKLGVNNVHEAIRYAMRSGL 206

Query: 246 V 246
           V
Sbjct: 207 V 207


>gi|257415200|ref|ZP_05592194.1| salavaricin two-component system response regulator [Enterococcus
           faecalis AR01/DG]
 gi|257157028|gb|EEU86988.1| salavaricin two-component system response regulator [Enterococcus
           faecalis ARO1/DG]
          Length = 202

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  +S+G     IA  + I+  T+ NY+ SI  K  T +   ++  A+   I
Sbjct: 137 ITPREKEVLRILSQGVKQSAIASKMNITERTLRNYVYSINEKLGTNSAIASVVKAIELGI 196

Query: 246 V 246
           +
Sbjct: 197 I 197


>gi|258654854|ref|YP_003204010.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558079|gb|ACV81021.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 209

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T RE++ L  +++G ++ EIA  L +S +TV  +   + RK     R+ A+A  +R 
Sbjct: 146 LAVTDRELQILRGMTDGFSNLEIAKQLFVSEDTVKTHARRLFRKLGANDRAHAVALGMRF 205

Query: 244 NIV 246
            +V
Sbjct: 206 ELV 208


>gi|254430257|ref|ZP_05043960.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
 gi|197624710|gb|EDY37269.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
          Length = 291

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE+E L  ++ G ++ EIA  L +S +TV  ++ +++RK   + R+ A    V
Sbjct: 226 LTPRELEVLAQVARGCSNVEIAGSLYLSVDTVKTHLQNVLRKLPARDRAHAAVLGV 281


>gi|73541229|ref|YP_295749.1| LuxR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72118642|gb|AAZ60905.1| transcriptional regulator, LuxR family [Ralstonia eutropha JMP134]
          Length = 394

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           F+LT  E +    ++ G T DE A  LGIS+NT   ++ +I  KT 
Sbjct: 330 FDLTPAETQLALQLANGLTLDEAADELGISKNTARAHLRAIFSKTG 375


>gi|23336584|ref|ZP_00121794.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bifidobacterium longum
           DJO10A]
 gi|189440631|ref|YP_001955712.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|312133936|ref|YP_004001275.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689868|ref|YP_004209602.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691808|ref|YP_004221378.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189429066|gb|ACD99214.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|291516417|emb|CBK70033.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bifidobacterium longum subsp.
           longum F8]
 gi|311773230|gb|ADQ02718.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|320456664|dbj|BAJ67286.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461204|dbj|BAJ71824.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 231

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+    +A    I
Sbjct: 171 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 230

Query: 246 V 246
           V
Sbjct: 231 V 231


>gi|325068150|ref|ZP_08126823.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Actinomyces oris
           K20]
          Length = 226

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT RE E +  ++EG  + E A  L +S  TV N+I++I+ K   + R+
Sbjct: 165 LTDREYEVVEAVAEGLDNAEAAARLFMSEGTVRNHISAILAKLGLRNRT 213


>gi|320093927|ref|ZP_08025762.1| LuxR family DNA-binding response regulator [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979139|gb|EFW10647.1| LuxR family DNA-binding response regulator [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 215

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A
Sbjct: 144 HEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAA 203

Query: 239 Y 239
           +
Sbjct: 204 W 204


>gi|301383778|ref|ZP_07232196.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tomato Max13]
          Length = 104

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y   ++ K    +    I  A RN +
Sbjct: 44  LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGL 103

Query: 246 V 246
           V
Sbjct: 104 V 104


>gi|239942915|ref|ZP_04694852.1| erythropoiesis-stimulating protein [Streptomyces roseosporus NRRL
           15998]
 gi|239989375|ref|ZP_04710039.1| erythropoiesis-stimulating protein [Streptomyces roseosporus NRRL
           11379]
          Length = 331

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G D+  TGR  E +  +S G T + +A  LG+S  TV   ++ +  +    +R  A 
Sbjct: 261 VEPGDDWRPTGRHRELVRMLSGGLTDEAMARKLGLSERTVRRLVSELTERLGAASRFQAG 320

Query: 238 AYAVR 242
             AVR
Sbjct: 321 VCAVR 325


>gi|189461728|ref|ZP_03010513.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136]
 gi|189431488|gb|EDV00473.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136]
          Length = 215

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT  E E L  ++ GKT+ EIA    +S  TV  +  +I RK        AI YA+R  
Sbjct: 147 QLTMTEKEVLRSLTLGKTTKEIAAERFLSVYTVMTHRKNIFRKLNVNNAQEAIRYALRAG 206

Query: 245 IV 246
           IV
Sbjct: 207 IV 208


>gi|182439176|ref|YP_001826895.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779828|ref|ZP_08239093.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178467692|dbj|BAG22212.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660161|gb|EGE45007.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 234

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+
Sbjct: 168 KAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 227

Query: 242 RNNI 245
              +
Sbjct: 228 ERGL 231


>gi|167584244|ref|ZP_02376632.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 215

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 149 LSDREFDVFRRIAAGQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKL 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|91790738|ref|YP_551689.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91700618|gb|ABE46791.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 231

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT ++V+ L     G ++ E A  LG++  TVN ++A+I  K  T+ +  +I+ A+
Sbjct: 171 LTAQQVKVLNLSLHGLSARECAASLGVTERTVNFHLATIQEKFGTQNKQESISKAI 226


>gi|23466193|ref|NP_696796.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23326934|gb|AAN25432.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 231

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+    +A    I
Sbjct: 171 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 230

Query: 246 V 246
           V
Sbjct: 231 V 231


>gi|320106198|ref|YP_004181788.1| LuxR family transcriptional regulator [Terriglobus saanensis
           SP1PR4]
 gi|319924719|gb|ADV81794.1| transcriptional regulator, LuxR family [Terriglobus saanensis
           SP1PR4]
          Length = 219

 Score = 35.0 bits (79), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE++ + +I +G  + EIA+ +G     V NY+ SI  KT    R
Sbjct: 142 LTPRELQIVGFIVQGCKNKEIALQIGTKEQVVKNYLRSIYDKTGVSDR 189


>gi|306407932|dbj|BAJ16474.1| regulatory protein [Streptomyces graminofaciens]
          Length = 243

 Score = 35.0 bits (79), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               L+ +E E +T ++ G +  EIAV + ++  TV NY++ I  K   ++RS A+
Sbjct: 174 PSLALSPQEREIMTRLASGLSVREIAVEMRLAEKTVRNYLSHIYGKLGVRSRSQAL 229


>gi|238059358|ref|ZP_04604067.1| sensor transduction protein [Micromonospora sp. ATCC 39149]
 gi|237881169|gb|EEP69997.1| sensor transduction protein [Micromonospora sp. ATCC 39149]
          Length = 221

 Score = 35.0 bits (79), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++G ++ EIA  + ++  TV  ++  I+ K   + R  A+  A  + 
Sbjct: 156 QLTEREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLRLRDRVQAVVLAYESG 215

Query: 245 IV 246
           +V
Sbjct: 216 LV 217


>gi|329767671|ref|ZP_08259190.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341]
 gi|328839021|gb|EGF88609.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341]
          Length = 199

 Score = 35.0 bits (79), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ +E   L  I EG ++ EIA  L +S  T+ NYI++I+ K   K R+ A+
Sbjct: 139 LSNQEKIILLKIKEGLSNKEIANELFLSEGTIRNYISNILTKLNCKNRTEAV 190


>gi|294012984|ref|YP_003546444.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292676314|dbj|BAI97832.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 248

 Score = 35.0 bits (79), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +T R+ +C+ W + GK+  E + IL ISR TV ++I
Sbjct: 173 ITDRQRDCVQWAARGKSDWETSQILDISRETVTSHI 208


>gi|225872721|ref|YP_002754178.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794134|gb|ACO34224.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 203

 Score = 35.0 bits (79), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L    EGK S +IA  L +S  TV NY++  + K     R
Sbjct: 143 LTERERQILWRAGEGKASQDIAAELHLSEGTVRNYLSEAISKLGAANR 190


>gi|212716361|ref|ZP_03324489.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660614|gb|EEB21189.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM
           16992]
          Length = 228

 Score = 35.0 bits (79), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+    +A    I
Sbjct: 168 LSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 227

Query: 246 V 246
           V
Sbjct: 228 V 228


>gi|326331580|ref|ZP_08197870.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium
           Broad-1]
 gi|325950836|gb|EGD42886.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium
           Broad-1]
          Length = 297

 Score = 35.0 bits (79), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE++ L  ++ G ++ E A  LGI  +TV +Y+ S  RK     R  A+  A    +
Sbjct: 236 LAAREIDVLRQVALGNSNREAAEALGIVESTVKSYLKSATRKLNANNRVHAVRMAREAGL 295

Query: 246 V 246
           +
Sbjct: 296 I 296


>gi|227540406|ref|ZP_03970455.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239730|gb|EEI89745.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 117

 Score = 35.0 bits (79), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 156 RDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ++   +I L+  Y    F   + D    KD + + REV+ +  I+EG +++EIA  L I+
Sbjct: 25  KENTNKISLIGLYGEPSFIHLNVDTQEKKDTKFSKREVDIIKLIAEGLSNNEIAEKLFIA 84

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  +  +I+ K   K  +  I  +V   ++
Sbjct: 85  SVTVKKHRQNILLKAGCKNTAQLIKNSVLQGLI 117


>gi|225166130|ref|ZP_03727857.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224799629|gb|EEG18131.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 214

 Score = 35.0 bits (79), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L     G  ++E+A   G++  TV N+  +IM K    +    + YA+ N 
Sbjct: 147 LTDREIEALRLFGLGLGNEEVAGRFGVNPLTVRNHRRAIMTKLGIHSTPELVRYAIENG 205


>gi|10954690|ref|NP_066625.1| hypothetical protein pRi1724_p045 [Agrobacterium rhizogenes]
 gi|8918690|dbj|BAA97755.1| riorf44 [Agrobacterium rhizogenes]
 gi|10567354|dbj|BAB16163.1| riorf44 [Agrobacterium rhizogenes]
          Length = 67

 Score = 35.0 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTV 217
           E+ CL WI+ GK+ D+IA++ GI+R  V
Sbjct: 11  EIVCLQWIAHGKSIDDIALLEGITRELV 38


>gi|330822044|ref|YP_004350906.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
 gi|327374039|gb|AEA65394.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
          Length = 215

 Score = 35.0 bits (79), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE++ L  ++EG +S +IA+  G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 155 LTPRELDILDALAEGLSSKQIALQNGLSVRTVETHRLNLKRKLGIEGQAELIKFAVEH 212


>gi|311897623|dbj|BAJ30031.1| putative LuxR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 331

 Score = 35.0 bits (79), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRII----LRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           D +   L  D    R G ++L   G +     L + +W+         N     DV   +
Sbjct: 213 DRQQAVLPIDTEDARAGAVVLRGAGTVAALCALFESVWD---------NAIPVGDVPKCE 263

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              +  +E+  L  +S+G T + IA  +G+S  T   + A++M +   ++R  A  +AV+
Sbjct: 264 ADGMPPQELAVLKMLSQGYTDEAIAKRMGVSPRTARRFAANLMERLDARSRFEAGVHAVQ 323

Query: 243 NN 244
           + 
Sbjct: 324 DG 325


>gi|227546539|ref|ZP_03976588.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227212856|gb|EEI80735.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 231

 Score = 35.0 bits (79), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+    +A    I
Sbjct: 171 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 230

Query: 246 V 246
           V
Sbjct: 231 V 231


>gi|74317308|ref|YP_315048.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056803|gb|AAZ97243.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 209

 Score = 35.0 bits (79), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + +  I++G++ ++IA  L +S  T++ Y A  M+K      +  + YA+ ++
Sbjct: 148 QLSDREFQIVRLIAQGESLNQIADKLSLSAKTISTYKARSMQKLGISNHTELVRYAIAHH 207


>gi|114047794|ref|YP_738344.1| transcriptional regulator NarL [Shewanella sp. MR-7]
 gi|113889236|gb|ABI43287.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 221

 Score = 35.0 bits (79), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209
           G+I+L D +      A   A   +       +D E LT RE + +  +S+G ++  IA  
Sbjct: 131 GKIVLSDAI------APILATGLRHNPPATKRDIESLTAREKDIIRLVSQGLSNKMIARK 184

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L I+  TV  ++ ++++K + K+R  A  + ++ NI
Sbjct: 185 LIITEGTVKVHVKNLLKKLSFKSRVEATVWILQENI 220


>gi|326329224|ref|ZP_08195550.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325952959|gb|EGD44973.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 232

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           D ELT RE+E L  ++ G ++  I   L IS  T   ++ +I+RK     R+ A+
Sbjct: 169 DSELTSRELEVLELLAHGLSNRAIGHRLYISDTTAKFHVGNILRKLGVSRRAEAV 223


>gi|159036018|ref|YP_001535271.1| LuxR family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914853|gb|ABV96280.1| transcriptional regulator, LuxR family [Salinispora arenicola
           CNS-205]
          Length = 202

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE   L  +++G  + EIA  L  S  TV + +  I R+   + R+ A+AY +R
Sbjct: 139 DPRLSERERAVLRLVADGHETGEIAKQLCYSSRTVTSVVHDITRRFRLRNRAHAVAYTLR 198

Query: 243 NNIV 246
             ++
Sbjct: 199 AGLL 202


>gi|39995364|ref|NP_951315.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982126|gb|AAR33588.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
          Length = 215

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  + EGK S EIA IL +S  ++  Y + +M K         + +A+ + +
Sbjct: 152 LSQREREVLQLVVEGKKSSEIAEILSLSPKSIETYRSRLMIKLGITNIPSLVKFALLHGV 211


>gi|27380799|ref|NP_772328.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27353964|dbj|BAC50953.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 217

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +L  RE+E L   + G T+++IA  L +S  TV NY   I  KT  +T
Sbjct: 154 QLGEREIEILRQFAGGATTEQIATHLNLSVKTVQNYHYLIKTKTGART 201


>gi|326773634|ref|ZP_08232917.1| DNA-binding response regulator, LuxR family [Actinomyces viscosus
           C505]
 gi|326636864|gb|EGE37767.1| DNA-binding response regulator, LuxR family [Actinomyces viscosus
           C505]
          Length = 217

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 151 DLTNAERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 205


>gi|302540939|ref|ZP_07293281.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302458557|gb|EFL21650.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces himastatinicus ATCC 53653]
          Length = 214

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E L  I +G T+ EIA  L ++ +TV  ++  ++ K   + R  A+   VR+
Sbjct: 157 LSDREREVLVAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVIMGVRH 214


>gi|300788042|ref|YP_003768333.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797556|gb|ADJ47931.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE + L  ++ G+T+ EI   L I+ +TV  +IAS+M K   + R
Sbjct: 155 LTDREEQVLLSVARGRTNREITEELYITLSTVKTHIASLMAKLGARNR 202


>gi|298504366|gb|ADI83089.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 214

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  + EGK S EIA IL +S  ++  Y + +M K         + +A+ + +
Sbjct: 151 LSQREREVLQLVVEGKKSSEIAEILSLSPKSIETYRSRLMIKLGITNIPSLVKFALLHGV 210


>gi|296169094|ref|ZP_06850753.1| LuxR family DNA-binding response regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896214|gb|EFG75876.1| LuxR family DNA-binding response regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 223

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A +
Sbjct: 150 LTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASK 206


>gi|289706741|ref|ZP_06503085.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289556541|gb|EFD49888.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 224

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT REV+ L     G +   IA  L +S  TV N++++ + KTAT TR  A   A
Sbjct: 164 LTPREVDVLREALTGASVRAIAGRLHLSAGTVRNHLSAAIGKTATSTRGEAATVA 218


>gi|198275681|ref|ZP_03208212.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135]
 gi|198271310|gb|EDY95580.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135]
          Length = 202

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  +  G T+ EIA  L IS +TV  +  +I RK    + +G   YA+ N +
Sbjct: 133 LSQREKEIVGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIHSAAGLTIYAIVNKL 192

Query: 246 V 246
           V
Sbjct: 193 V 193


>gi|119717167|ref|YP_924132.1| two component LuxR family transcriptional regulator [Nocardioides
           sp. JS614]
 gi|119537828|gb|ABL82445.1| two component transcriptional regulator, LuxR family [Nocardioides
           sp. JS614]
          Length = 215

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  ++EG  + +IA  LGIS  TV  +   I  K    +R+ A+  A+  N+
Sbjct: 148 LTDRERAVLRLLAEGMHNKQIASRLGISARTVERHCDRIYGKLGVTSRTEAVVRAISANL 207

Query: 246 V 246
           +
Sbjct: 208 L 208


>gi|317507118|ref|ZP_07964879.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254612|gb|EFV13921.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 214

 Score = 35.0 bits (79), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT +E   L  I EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   AVR 
Sbjct: 155 LTEQERVLLDLIGEGLTNRQIAERMFLAEKTVRNYVSKLLAKLGVERRTQAAVLAVRT 212


>gi|301631649|ref|XP_002944911.1| PREDICTED: oxygen regulatory protein nreC-like [Xenopus (Silurana)
           tropicalis]
          Length = 241

 Score = 35.0 bits (79), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE + L  +++G ++ EIA  L +SR TV +++  + RK A  +R  A+  A
Sbjct: 180 LSVREGQILRLVADGLSNREIAEQLFLSRYTVESHVKRVYRKLAVSSRMNAVREA 234


>gi|118580732|ref|YP_901982.1| LuxR family transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118503442|gb|ABK99924.1| transcriptional regulator, LuxR family [Pelobacter propionicus DSM
           2379]
          Length = 201

 Score = 35.0 bits (79), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ +E E +  +S+G T+ EIA  L IS  TV  +I +I +KT    R+  +   ++
Sbjct: 138 LSNKEREVVISVSQGLTNREIAARLYISEQTVKTHINNIFKKTNMARRTQLVPLGIK 194


>gi|229514137|ref|ZP_04403598.1| transcriptional regulatory protein UhpA [Vibrio cholerae TMA 21]
 gi|229348117|gb|EEO13075.1| transcriptional regulatory protein UhpA [Vibrio cholerae TMA 21]
          Length = 208

 Score = 35.0 bits (79), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REVE    + +GK   EIA  L +S  TV+ + A+I+ K         I +A+++ 
Sbjct: 144 DLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHQ 203

Query: 245 IV 246
           ++
Sbjct: 204 LL 205


>gi|172062531|ref|YP_001810182.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|171995048|gb|ACB65966.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
          Length = 203

 Score = 35.0 bits (79), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ +  I  G+T   IA  L +S  TV+ Y   I+ K      +  + YAVR+++
Sbjct: 137 LSARELDVMRRIVAGQTVTRIAAELTLSAKTVSTYKTRILEKMELPHEAALVRYAVRHDL 196


>gi|34497324|ref|NP_901539.1| LuxR family two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|34103180|gb|AAQ59543.1| probable two-component response regulator, LuxR family
           [Chromobacterium violaceum ATCC 12472]
          Length = 222

 Score = 35.0 bits (79), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E L WI+EG +  EIA     S  T++    S+M+K   K   G ++Y
Sbjct: 155 LTKKEWEVLLWIAEGMSVSEIASKKQRSIKTISTQKRSVMKKLGIKNDFGLMSY 208


>gi|226359606|ref|YP_002777384.1| two-component response regulator DevR [Rhodococcus opacus B4]
 gi|226238091|dbj|BAH48439.1| two-component response regulator DevR [Rhodococcus opacus B4]
          Length = 215

 Score = 35.0 bits (79), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 181 GKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           GKD     LT +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A 
Sbjct: 143 GKDGIFAHLTNQERTLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLTKLGVERRTQAA 202

Query: 238 AYAVR 242
             A +
Sbjct: 203 VLATK 207


>gi|225351362|ref|ZP_03742385.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157706|gb|EEG70989.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 220

 Score = 35.0 bits (79), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G+   LT RE + +  ++EG  + EIA  L +S  TV N I+ I+ KT    R+
Sbjct: 157 GRFANLTERERDVMQLVAEGYDNREIAAKLFLSEGTVRNRISDILAKTNVTNRT 210


>gi|239621538|ref|ZP_04664569.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515413|gb|EEQ55280.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 231

 Score = 35.0 bits (79), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+    +A    I
Sbjct: 171 LSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRI 230

Query: 246 V 246
           V
Sbjct: 231 V 231


>gi|54302058|ref|YP_132051.1| putative transcriptional regulator UhpA [Photobacterium profundum
           SS9]
 gi|46915479|emb|CAG22251.1| putative transcriptional regulator UhpA [Photobacterium profundum
           SS9]
          Length = 209

 Score = 35.0 bits (79), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E  T + +GK   E  +IL IS  T++ + A+I+ K         I +A+++ +
Sbjct: 147 LTKREYEVFTHLIQGKDVKEAGIILSISYKTIHVHRANILSKLGLSNNVDLIRFALQHKL 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|331002765|ref|ZP_08326280.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330407178|gb|EGG86682.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 215

 Score = 35.0 bits (79), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+E +  + EG ++ +IA  L +S  TV  ++++I  K    +R+  + +  RN
Sbjct: 144 LTKRELEVVLLLKEGYSNAKIAEELFVSEGTVKKHLSNIFGKLQLYSRTEVLVFVERN 201


>gi|291446388|ref|ZP_06585778.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
 gi|291349335|gb|EFE76239.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
          Length = 337

 Score = 35.0 bits (79), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G D+  TGR  E +  +S G T + +A  LG+S  TV   ++ +  +    +R  A 
Sbjct: 267 VEPGDDWRPTGRHRELVRMLSGGLTDEAMARKLGLSERTVRRLVSELTERLGAASRFQAG 326

Query: 238 AYAVR 242
             AVR
Sbjct: 327 VCAVR 331


>gi|229522252|ref|ZP_04411668.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM
           11079-80]
 gi|229340237|gb|EEO05243.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM
           11079-80]
          Length = 208

 Score = 35.0 bits (79), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REVE    + +GK   EIA  L +S  TV+ + A+I+ K         I +A++++
Sbjct: 144 DLTKREVEVFDLLVKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHH 203

Query: 245 IV 246
           ++
Sbjct: 204 LL 205


>gi|328881828|emb|CCA55067.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 223

 Score = 35.0 bits (79), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+
Sbjct: 157 KAPQLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 216

Query: 242 RNNI 245
              +
Sbjct: 217 ERGL 220


>gi|294013470|ref|YP_003546930.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676800|dbj|BAI98318.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 250

 Score = 35.0 bits (79), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L W+  G  +  I+  + IS  TV  ++ +++RK   K R+ A  +A  + +
Sbjct: 158 LSDRELEILRWLIMGCPNKVISKRMDISEATVKVHVKAVLRKLRVKNRTQAAIWAANHGM 217


>gi|297563666|ref|YP_003682640.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848114|gb|ADH70134.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 223

 Score = 35.0 bits (79), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ELT +E + L  I EG T+ +I   L ++  TV NY+++++ K   K R+ A
Sbjct: 160 ELTPQERQILDLIGEGMTNRQIGERLYLAEKTVKNYVSALLSKLDLKRRTQA 211


>gi|219882706|ref|YP_002477870.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Arthrobacter chlorophenolicus A6]
 gi|219861712|gb|ACL42053.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Arthrobacter chlorophenolicus A6]
          Length = 859

 Score = 35.0 bits (79), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L   +  K ++++A  L +S NTV +   SI++K A  +   A+  A R  +
Sbjct: 797 LTPRELVVLNAFARHKAANDVAAALNVSVNTVKSQRRSILKKLAAHSMEEALTIARRQRL 856

Query: 246 V 246
           +
Sbjct: 857 L 857


>gi|157961641|ref|YP_001501675.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157846641|gb|ABV87140.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC
           700345]
          Length = 211

 Score = 35.0 bits (79), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +  G T+ +IA  L +S +T+  ++    RK    +R  AIA+A  N
Sbjct: 148 LTIREREVLQVLRNGSTNIDIANRLFVSESTIKTHLYRAFRKIGVSSRGQAIAWAQTN 205


Searching..................................................done


Results from round 2




>gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040371|gb|ACT57167.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 246

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH
Sbjct: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI
Sbjct: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW
Sbjct: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA
Sbjct: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240

Query: 241 VRNNIV 246
           VRNNIV
Sbjct: 241 VRNNIV 246


>gi|315121859|ref|YP_004062348.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495261|gb|ADR51860.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 246

 Score =  353 bits (906), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 224/246 (91%), Positives = 234/246 (95%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MNFE+QQVNIVLNREDEQRTS VSHLPTRSDLLARMIPLD TVS  MRMYALTEYVGASH
Sbjct: 1   MNFEMQQVNIVLNREDEQRTSIVSHLPTRSDLLARMIPLDRTVSSKMRMYALTEYVGASH 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           FLLVRWDLFQEQKLDS+VSSDWPFDLVRCM LSEKDKYYNVLQRP ELFCPVFH LPENI
Sbjct: 61  FLLVRWDLFQEQKLDSVVSSDWPFDLVRCMTLSEKDKYYNVLQRPAELFCPVFHILPENI 120

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
             P+GMDNRYC+LTFDV RIRIGLMLLFPKGRI+ +DRLWEIGLLAAYQANMFK+Y+VH 
Sbjct: 121 DLPSGMDNRYCALTFDVGRIRIGLMLLFPKGRIVSQDRLWEIGLLAAYQANMFKNYNVHL 180

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKDFELTGRE+ECLTWISEGKTSDEIAVILGISRNT+NNYIASIMRKTATKTRSGAIAYA
Sbjct: 181 GKDFELTGREIECLTWISEGKTSDEIAVILGISRNTINNYIASIMRKTATKTRSGAIAYA 240

Query: 241 VRNNIV 246
           VRNNIV
Sbjct: 241 VRNNIV 246


>gi|209547914|ref|YP_002279831.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533670|gb|ACI53605.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 248

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/248 (50%), Positives = 162/248 (65%), Gaps = 2/248 (0%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ ++ Q +    +     ++ V  L  R  LL R+  +  T      + ALTEYVGASH
Sbjct: 1   MDMDVIQASKGERQMSNFASAVVPDLLPRDQLLQRLHGVANTGRLQSGLRALTEYVGASH 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118
           +LL R DL QE  LD IVSSDWPFDLVR +A      Y     L++  ++F P F  +P+
Sbjct: 61  YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPD 120

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +   P G   +YCS+TF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +    
Sbjct: 121 SADVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT 180

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA
Sbjct: 181 RVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 240

Query: 239 YAVRNNIV 246
           +AVRNN+V
Sbjct: 241 FAVRNNLV 248


>gi|190890349|ref|YP_001976891.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695628|gb|ACE89713.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 248

 Score =  283 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 127/252 (50%), Positives = 165/252 (65%), Gaps = 10/252 (3%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSH----LPTRSDLLARMIPLDCTVSWTMRMYALTEYV 56
           M+  I Q +    + ++Q  +F S     L  R +L+ R+  +  T      + ALTEYV
Sbjct: 1   MDMSIFQAS----KGEKQMMNFASAVAPALLPRDELIQRLHSVASTGRLQSGLRALTEYV 56

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFH 114
           GASH+LL R DL QE  LD +VSSDWPFDLV+ +A      Y     L++  ++F P F 
Sbjct: 57  GASHYLLARCDLIQESGLDFVVSSDWPFDLVKDIANDLVSGYARSTELEKCMQVFQPNFA 116

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
            LPE+   P G   +YCSLTF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +
Sbjct: 117 LLPESAAVPEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLR 176

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                  +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS
Sbjct: 177 CGGARVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRS 236

Query: 235 GAIAYAVRNNIV 246
            AIA+AVRNN+V
Sbjct: 237 EAIAFAVRNNLV 248


>gi|82940562|emb|CAJ44291.1| putative transcription regulator protein MotR, LuxR family
           [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score =  281 bits (720), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 124/248 (50%), Positives = 161/248 (64%), Gaps = 2/248 (0%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+  + Q +    +     ++ V  L  R  LL R+  +  +      + ALT+YVGASH
Sbjct: 1   MDMNVIQASKGERQMANFASAVVPDLLPRDKLLQRLHGVTSSGRLQSGLRALTDYVGASH 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118
           +LL R DL QE  LD IVSSDWPFDLVR +A      Y     L+R  ++F P F  LP+
Sbjct: 61  YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELERCMQVFQPNFALLPD 120

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +   P G   +YCS+TF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +    
Sbjct: 121 SAEVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT 180

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA
Sbjct: 181 RVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 240

Query: 239 YAVRNNIV 246
           +AVRNN+V
Sbjct: 241 FAVRNNLV 248


>gi|116250468|ref|YP_766306.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255116|emb|CAK06190.1| regulator of flagellar and motility genes, also regulates rem
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 262

 Score =  281 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 124/248 (50%), Positives = 161/248 (64%), Gaps = 2/248 (0%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+  + Q +          ++ V  L  R +LL R+  +  T      + ALT+YVGASH
Sbjct: 15  MDMNVIQASKGERHMANFASAVVPDLLPRDELLQRLHGVASTGRLQSGLRALTDYVGASH 74

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118
           +LL R DL QE  LD IVSSDWPFDLVR +A      Y     L++  ++F P F  LP+
Sbjct: 75  YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPD 134

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +   P G   +YCS+TF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +    
Sbjct: 135 SAEVPDGASRQYCSVTFNVGRSRLSLMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT 194

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA
Sbjct: 195 KVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 254

Query: 239 YAVRNNIV 246
           +AVRNN+V
Sbjct: 255 FAVRNNLV 262


>gi|241203092|ref|YP_002974188.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856982|gb|ACS54649.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 248

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 123/248 (49%), Positives = 162/248 (65%), Gaps = 2/248 (0%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+  + Q +    +     ++ V  L  R +LL R+  +  T      + ALT+YVGAS+
Sbjct: 1   MDMNVIQASKGERQMANFASAAVPDLLPRDELLQRLHGVASTGRLQSGLRALTDYVGASY 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118
           +LL R DL QE  LD IVSSDWPFDLVR +A      Y     L++  ++F P F  LP+
Sbjct: 61  YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPD 120

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +   P G   +YCS+TF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +    
Sbjct: 121 SAEVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT 180

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA
Sbjct: 181 KVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 240

Query: 239 YAVRNNIV 246
           +AVRNN+V
Sbjct: 241 FAVRNNLV 248


>gi|262283887|gb|ACY40751.1| VisN [Rhizobium leguminosarum bv. viciae]
          Length = 262

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 124/248 (50%), Positives = 161/248 (64%), Gaps = 2/248 (0%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+  + Q +          ++ V  L  R +LL R+  +  T      + ALT+YVGASH
Sbjct: 15  MDMNVIQASKGERHMANFASAVVPDLLPRDELLLRLHGVASTGRLQSGLRALTDYVGASH 74

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118
           +LL R DL QE  LD IVSSDWPFDLVR +A      Y     L++  ++F P F  LP+
Sbjct: 75  YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPD 134

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +   P G   +YCS+TF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +    
Sbjct: 135 SAEVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT 194

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA
Sbjct: 195 KVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 254

Query: 239 YAVRNNIV 246
           +AVRNN+V
Sbjct: 255 FAVRNNLV 262


>gi|86356298|ref|YP_468190.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280400|gb|ABC89463.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 234

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 121/229 (52%), Positives = 152/229 (66%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           +     L  R +L+ R+  +  T      + ALT+YVGASH+LL R DL QE  LD IVS
Sbjct: 6   SVVAPALLPRDELVRRLHGVADTGRLQSGLRALTDYVGASHYLLARCDLIQESGLDFIVS 65

Query: 80  SDWPFDLVRCM--ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +   L         L++  ++F P F  LPE    P G   +YCSLTF+V
Sbjct: 66  SDWPFDLVRDIANDLVSTYARSTELEKCMQVFQPNFALLPEGADVPEGASRQYCSLTFNV 125

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 126 GRSRLALMFLFGEGFILSPERLRDVGLLAGYIASFLRCGGAKVDRDFELTDRELECLFWI 185

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 186 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 234


>gi|222084851|ref|YP_002543380.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722299|gb|ACM25455.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 245

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 121/248 (48%), Positives = 163/248 (65%), Gaps = 5/248 (2%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +I Q +     + + R +  S   +R  L+ ++  +         +  LT+YVGASH
Sbjct: 1   MDMQISQAS---KGDKDARAAAPSSAMSRDQLILQLTAVAGPAYLQSGLRVLTDYVGASH 57

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN--VLQRPTELFCPVFHTLPE 118
           +LL R DL QE  LD +VSSDWPFDLVR +A    + Y     L++   LF PVF  LP+
Sbjct: 58  YLLARCDLIQESGLDFVVSSDWPFDLVRRLASELTNGYGRAGELEKSMSLFQPVFAFLPD 117

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           ++ PP G+   YC+LTF+V R R  LMLL     ++  +RL ++GLLA Y A+  +S + 
Sbjct: 118 DVEPPEGVSRHYCALTFNVGRTRFSLMLLARDSLLLSPERLRDVGLLAGYFASFTRSVEG 177

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +DF+LT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA
Sbjct: 178 KLERDFDLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 237

Query: 239 YAVRNNIV 246
           +AVRNN+V
Sbjct: 238 FAVRNNLV 245


>gi|150395470|ref|YP_001325937.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150026985|gb|ABR59102.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 245

 Score =  263 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 112/246 (45%), Positives = 158/246 (64%), Gaps = 3/246 (1%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E+ + + V + E   R  +   + +R  L+ R+  L         +  LTEYVGA+H+L
Sbjct: 1   MEMSRSDAVWSSETAARRMYGRRI-SREQLIRRLGELASGTGLGNGLAVLTEYVGATHYL 59

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           L R D+ Q+  LD +V SDWPFD+VR ++  ++  +     L++      PVFH +P++I
Sbjct: 60  LARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLNSKTTELEKCRAQLQPVFHAMPDDI 119

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
             P G+   YC++TF +   R  LMLLFP+  I+ +D L ++ +LA Y A+     DV  
Sbjct: 120 GLPRGVSRSYCAVTFSIGPTRFSLMLLFPEDVILSQDALRDVAVLAGYVASHKIKADVRH 179

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+A
Sbjct: 180 DRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHA 239

Query: 241 VRNNIV 246
           VRNN+V
Sbjct: 240 VRNNLV 245


>gi|15964400|ref|NP_384753.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15073577|emb|CAC45219.1| Transcriptional regulator of motility genes, LuxR family
           [Sinorhizobium meliloti 1021]
          Length = 245

 Score =  261 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 114/246 (46%), Positives = 157/246 (63%), Gaps = 3/246 (1%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E+ + + V + E          + +R  L+ R+  +         + ALTEYVGA+H+L
Sbjct: 1   MEMSRSDAVWSSETAAPRVCGRKI-SREQLIRRLGEVASGAGLGNGLAALTEYVGATHYL 59

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           L R D+ Q+  LD +V SDWPFD+VR ++  ++        L+R      P FHT+P++I
Sbjct: 60  LARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLHAKITELERCLAQLQPAFHTMPDDI 119

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
             P G+   YC++TF V R R  LMLLFP+  I+ ++ L +I +LA Y A+     DV  
Sbjct: 120 GLPRGVSRSYCAVTFSVGRTRFSLMLLFPEDVILSQEALRDIAVLAGYVASHKIKADVRH 179

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+A
Sbjct: 180 DRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHA 239

Query: 241 VRNNIV 246
           VRNN+V
Sbjct: 240 VRNNLV 245


>gi|2916781|emb|CAA11948.1| unnamed protein product [Sinorhizobium meliloti]
          Length = 245

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 113/246 (45%), Positives = 157/246 (63%), Gaps = 3/246 (1%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E+ + + V + E          + +R  L+ R+  +         + ALTEYVGA+H+L
Sbjct: 1   MEMSRSDAVWSSETAAPRVCGRKI-SREQLIRRLGEVASGAGLGNGLAALTEYVGATHYL 59

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           L R D+ Q+  LD +V SDWPFD+VR ++  ++        L++      P FHT+P++I
Sbjct: 60  LARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLHAKITELEKCLAQLQPAFHTMPDDI 119

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
             P G+   YC++TF V R R  LMLLFP+  I+ ++ L +I +LA Y A+     DV  
Sbjct: 120 GLPRGVSRSYCAVTFSVGRTRFSLMLLFPEDVILSQESLRDIAVLAGYVASHKIKADVRH 179

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+A
Sbjct: 180 DRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHA 239

Query: 241 VRNNIV 246
           VRNN+V
Sbjct: 240 VRNNLV 245


>gi|227820843|ref|YP_002824813.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227339842|gb|ACP24060.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 245

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 111/225 (49%), Positives = 149/225 (66%), Gaps = 2/225 (0%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           S   +R  L+ R+       S    +  LTEYVGA+H LL R DL Q+  LD ++ SDWP
Sbjct: 21  SRGISREQLIRRLGEAAERSSLANGLAILTEYVGATHHLLARHDLSQDGGLDFVLCSDWP 80

Query: 84  FDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           FD+VR +A  +   +     L++      P F  LP++I  P G++  YCS+TF+V R R
Sbjct: 81  FDVVRRLASIVIGLNAKTTELEKCLAALQPCFQVLPDDIDLPRGVNRSYCSVTFNVGRSR 140

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             LMLLFP+  I+ ++ L +I +LA+Y A+      V   +DFELT RE+ECL WI+EGK
Sbjct: 141 FSLMLLFPEDVILSQEGLRDIAVLASYLASFKAGAGVRHDRDFELTEREIECLFWIAEGK 200

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS+EIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVR+N+V
Sbjct: 201 TSEEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRHNLV 245


>gi|307311542|ref|ZP_07591183.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318897|ref|ZP_07598328.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306895311|gb|EFN26066.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306899559|gb|EFN30188.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 210

 Score =  249 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 108/210 (51%), Positives = 143/210 (68%), Gaps = 2/210 (0%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKD 96
           +         + ALTEYVGA+H+LL R D+ Q+  LD +V SDWPFD+VR ++  ++   
Sbjct: 1   MASGAGLGNGLAALTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLH 60

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                L+R      P FHT+P++I  P G+   YC++TF V R R  LMLLFP+  I+ +
Sbjct: 61  AKITELERCLAQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSLMLLFPEDVILSQ 120

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + L +I +LA Y A+     DV   ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT
Sbjct: 121 EALRDIAVLAGYVASHKIKADVRHDRECELTERELECLFWIAEGKTSDEIAVILGISRNT 180

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +NNYI S+MRKTAT+TRS AIA+AVRNN+V
Sbjct: 181 INNYITSVMRKTATRTRSEAIAHAVRNNLV 210


>gi|222149995|ref|YP_002550952.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736977|gb|ACM37940.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 248

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 152/237 (64%), Gaps = 3/237 (1%)

Query: 13  NREDEQRTSFVSHLPT-RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
                Q+T+     P  R  ++ ++     +    + M+ LT+Y GASH+LL R+DL QE
Sbjct: 12  QGIRSQKTANRPEGPRLRDAMIRQLSSAASSGKLRVAMHILTDYAGASHYLLARYDLIQE 71

Query: 72  QKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
             LD +V++DWPFDL R +A  LS        L++   L    F  LP+++  P G   +
Sbjct: 72  HGLDFVVTADWPFDLARGVATELSAACSRATELEKCLGLLQAKFVLLPDDLELPLGASRQ 131

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           YCS+ F+V R R+ L++L P G +I  DRL ++GLLAAY  ++         +DFELT R
Sbjct: 132 YCSVMFNVGRTRLALVMLLPDGFVISPDRLRDVGLLAAYCVSLSTGRSQKADRDFELTER 191

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+ECL WI+EGKTSDEIA ILGISRNT+NNYI S+MRKTATKTRS AIAYAVRNN+V
Sbjct: 192 ELECLFWIAEGKTSDEIATILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 248


>gi|325291913|ref|YP_004277777.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059766|gb|ADY63457.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 251

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 105/222 (47%), Positives = 142/222 (63%), Gaps = 2/222 (0%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
             R  L   +       + +  +  L  Y GASH+LL R DL +E  L  I++SDWPFDL
Sbjct: 30  LPRDQLAKNVAASAAAGNVSGALDLLVTYAGASHYLLAREDLLEETGLKFIITSDWPFDL 89

Query: 87  VRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR +   L+      + +++   L  P    LP++++ P G+D +Y +L+F V RIR+ L
Sbjct: 90  VRRLGAELANSQNRSSEMEKCLSLLQPRLLVLPDDVSVPFGIDRQYSALSFCVGRIRLSL 149

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +LLFP+  +   DRL EI LL  Y  +   + +    +D +LT RE+ECL WI+EGKTSD
Sbjct: 150 LLLFPEHSVPSPDRLREIALLTGYCVSFGIASEAKAVRDIDLTERELECLFWIAEGKTSD 209

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA+ILGISRNT+NNYI S+MRKTATKTRS AIAYAVRNN+V
Sbjct: 210 EIAMILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 251


>gi|159184353|ref|NP_353554.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159139669|gb|AAK86339.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 226

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 104/222 (46%), Positives = 140/222 (63%), Gaps = 2/222 (0%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
             R  L   +       +    +  L  Y GASH+LL R DL +E  L  IV+SDWPFDL
Sbjct: 5   LPRDQLAKNVAATAAAGNVAGALDLLVTYAGASHYLLARDDLLEETGLKFIVTSDWPFDL 64

Query: 87  VRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR + +         + +++   L  P    LP++++ P G+D +Y +L+F V RIR+ L
Sbjct: 65  VRRLGIELTNSQNRSSEMEKCLSLLQPRLLLLPDDVSVPYGIDRQYSALSFCVGRIRLSL 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +LLFP+  +   +RL EI LL  Y  +   + +    +D +LT RE+ECL WI+EGKTSD
Sbjct: 125 LLLFPEEAVPSPERLREIALLTGYCVSFGIASEAKTVRDIDLTERELECLFWIAEGKTSD 184

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA+ILGISRNT+NNYI S+MRKTATKTRS AIAYAVRNN+V
Sbjct: 185 EIAMILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 226


>gi|163758000|ref|ZP_02165088.1| putative GerE/LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284289|gb|EDQ34572.1| putative GerE/LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 224

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R+  + ++       S       +++Y GA  +L+ R+D + ++  D +++S+WPFDLVR
Sbjct: 4   RAAFIQQIEDRTICGSIANGFDLISDYTGAKCYLVARYDHYSDRHHDFVLTSNWPFDLVR 63

Query: 89  CMA--LSEKDKYYNVLQRPTELFCPVFHTLPE-NITPPAGMDNRYCSLTFDVARIRIGLM 145
            +   L +     + + R    F P+F  +    +  P  +  R C + ++V ++R+ + 
Sbjct: 64  NLGAGLVDAQARTSEVSRCLHAFEPLFQDVDGVAVNLPENLSPRVCLVPYNVGKVRLLMA 123

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           LLF K   +  DR+ +  L A+Y A  F           +LT REVECL+WI EGKTSDE
Sbjct: 124 LLFEKDAFVSHDRIRDAALAASYHAVHFTEITTTSDSLSDLTDREVECLSWIGEGKTSDE 183

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+I+GISRNTVNNYI SIM KT  KTRS A+A+AVR  I+
Sbjct: 184 IALIIGISRNTVNNYITSIMNKTGAKTRSEAVAFAVRQRII 224


>gi|227821019|ref|YP_002824989.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227340018|gb|ACP24236.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 257

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 20/240 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWP 83
            LP   D  + +  L+        M  +T   G   FL+        ++L +  V S+ P
Sbjct: 19  ELPRGGDFASEIAKLETQFDIIRYMRRITHIFGFKTFLICSIPPIDMERLSAATVISNMP 78

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP----ENITPPAGMD------------ 127
            +L+         ++   ++R  E   P   TL     E  TP +  D            
Sbjct: 79  AELLNKYDSLSMLRFSTGVRRLRETTTPFQITLEDWESEGGTPDSAADYIVMLRENGIFQ 138

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFEL 186
             Y  +  D    R  ++L+ P+  + +   + E+ ++A +  N        W      L
Sbjct: 139 ANYFPVH-DAEGGRGAVILMGPEADLPMTAAM-ELQMIAIHVYNRLAEIGSVWKSSSTTL 196

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++CL+W + GKTS EIA ILG+S +TVN+Y+  + +K     R+ A+  A++   +
Sbjct: 197 SEREIQCLSWTAAGKTSAEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 256


>gi|15964582|ref|NP_384935.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309328|ref|ZP_07588991.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307320064|ref|ZP_07599485.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15073760|emb|CAC45401.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306894279|gb|EFN25044.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306900197|gb|EFN30815.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 277

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 101/240 (42%), Gaps = 20/240 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWP 83
            LP   D  + +  L+        M  +T+  G   FL+      + ++L +  V S+ P
Sbjct: 39  DLPRGGDFASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMP 98

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL---------- 133
            +L+         ++   ++R  E   P F  + E+     G  +               
Sbjct: 99  AELLNKYDSLSMLRFSTGVRRLRETTTP-FQVMLEDWEREGGKPDSAADYIAMLRENGIF 157

Query: 134 ------TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFEL 186
                   D    R  ++L+ P+  + +   + E+ ++A +  N        W   +  L
Sbjct: 158 QANYFPVHDAEGGRGAVILMGPEAELPMTAAM-ELQMIAIHVYNRLAEIGSVWKNTNTVL 216

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++CL+W + GKTS EIA ILG+S +TVN+Y+  + +K     R+ A+  A++   +
Sbjct: 217 SEREIQCLSWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 276


>gi|150395666|ref|YP_001326133.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150027181|gb|ABR59298.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 286

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 20/240 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWP 83
            LP   D  + +  L+        M  +T+  G   FL+      + ++L +  V S+ P
Sbjct: 48  DLPRGGDFASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMP 107

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSL------- 133
            +L+         ++   ++R  E   P F  L E+     G  +    Y ++       
Sbjct: 108 AELLNKYDSLSMLRFSTGVRRLRETTTP-FQILLEDWEKEGGKPDAAADYFAMLRENGLL 166

Query: 134 ------TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFEL 186
                   D    R  ++L+ P+  + +   + E+ ++A +  N        W   +  L
Sbjct: 167 QANYFPVHDAEGGRGAVILMGPEAGLPMTAAM-ELQMIAIHVYNRLAEIGSVWKNTNTVL 225

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++CL W + GKTS EIA ILG+S +TVN+Y+  + +K     R+ A+  A++   +
Sbjct: 226 SEREIQCLNWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 285


>gi|218671090|ref|ZP_03520761.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 202

 Score =  188 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 10/197 (5%)

Query: 1   MNFEIQQVNIVLNREDEQR----TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV 56
           M+  I Q +    + + Q     ++    L  R +L+ R+  +  T      + ALTEYV
Sbjct: 1   MDMNIFQAS----KGERQMINFASAVAPALLPRDELIQRLHSVASTGRLQSGLRALTEYV 56

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFH 114
           GASH+LL R DL QE  LD +V+SDWPFDLV+ +A +    Y     L++  ++F P F 
Sbjct: 57  GASHYLLARCDLIQESGLDFVVASDWPFDLVKDIANNLVSGYARSTELEKCMQVFQPNFA 116

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
            LPE+   P G   +YCSLTF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +
Sbjct: 117 LLPESADVPEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLR 176

Query: 175 SYDVHWGKDFELTGREV 191
                  +DFELT RE+
Sbjct: 177 CGGARVDRDFELTDREL 193


>gi|218658162|ref|ZP_03514092.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 144

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/144 (58%), Positives = 107/144 (74%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           ++  ++F P F  LPE+   P G   +YCSLTF+V R R+ LM LF +G I+  +RL ++
Sbjct: 1   EKCMQVFQPNFALLPESAAVPEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDV 60

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           GLLA Y A+  +       +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI 
Sbjct: 61  GLLAGYVASFLRCGGARVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYIT 120

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 121 SVMRKTATKTRSEAIAFAVRNNLV 144


>gi|307300496|ref|ZP_07580276.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318361|ref|ZP_07597796.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306896043|gb|EFN26794.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904662|gb|EFN35246.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 321

 Score =  185 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 22/243 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKL-DSIVS 79
            S     +++   + P      + +   M  L    G +HF++ R  L  EQ+  + +V 
Sbjct: 82  ASRREAEANMPFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPLADEQRFSERLVL 141

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR--YCSLTFDV 137
           S+WP +LV+     E  +   +++R  +   PV    PE + P      +  +  L    
Sbjct: 142 SNWPAELVQQYDAGETFQTSELVERLRQTKLPVTGG-PELMEPAGKGAGKAAFIRLPPHA 200

Query: 138 ARIRIGLMLLFPKGRIIL--------------RDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 ++L    G   +              R  L+ + LL  ++  + +++D   G  
Sbjct: 201 GMGHFAVLLHTTYGEPFVAVLSGTRDEPAGAERATLY-LALLQLFEC-LERTFDAGSGAR 258

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +L+ REVECL W + GK+SDEIA+ILGIS  TV++Y  S  RK     R  AIA A+R 
Sbjct: 259 EKLSSREVECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRM 318

Query: 244 NIV 246
            ++
Sbjct: 319 KLI 321


>gi|15966467|ref|NP_386820.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075738|emb|CAC47293.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
          Length = 247

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 22/243 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKL-DSIVS 79
            S     +++   + P      + +   M  L    G +HF++ R  L  EQ+  + +V 
Sbjct: 8   ASRREAEANMPFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPLADEQRFSERLVL 67

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR--YCSLTFDV 137
           S+WP +LV+     E  +   +++R  +   PV    PE + P      +  +  L    
Sbjct: 68  SNWPAELVQQYDAGETFQTSELVERLRQTKLPVTGG-PELMEPAGKGAGKAAFIRLPPHA 126

Query: 138 ARIRIGLMLLFPKGRIIL--------------RDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 ++L    G   +              R  L+ + LL  ++  + +++D   G  
Sbjct: 127 GMGHFAVLLHTTYGEPFVAVLSGTRDEPAGAERATLY-LALLQLFEC-LERTFDAGSGAR 184

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +L+ REVECL W + GK+SDEIA+ILGIS  TV++Y  S  RK     R  AIA A+R 
Sbjct: 185 EKLSSREVECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRM 244

Query: 244 NIV 246
            ++
Sbjct: 245 KLI 247


>gi|150397799|ref|YP_001328266.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150029314|gb|ABR61431.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 247

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 18/241 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKL-DSIVS 79
            S     +D+L  + P      + +   M  L    G +HF++ R  +  EQ+  + ++ 
Sbjct: 8   ASRREGETDMLFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQRFSERLML 67

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDV 137
           S+WP +LV+    SE  +   +++R  +   P+    PE + P      +  +  L    
Sbjct: 68  SNWPAELVQQYDASETFQASLLIERLRQTKLPIAGG-PELMEPARKGAGKAPAILLPPHA 126

Query: 138 ARIRIGLMLLFPKGR---IILRDRLWEIG---------LLAAYQANMFKSYDVHWGKDFE 185
                 ++L    G    ++L  +  E            L      + +++D   G   +
Sbjct: 127 DMAHFAVLLHTTYGEPFVVVLSGKRDEPAGGERATLYLALVQLFECLERTFDAGSGAREK 186

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W + GK+SDEIA+ILGIS  TV++Y  S  RK     R  AIA A+R  +
Sbjct: 187 LSSREIECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKL 246

Query: 246 V 246
           +
Sbjct: 247 I 247


>gi|218514697|ref|ZP_03511537.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 124

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/124 (62%), Positives = 96/124 (77%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           P G   +YCSLTF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +
Sbjct: 1   PEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGARVDR 60

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVR
Sbjct: 61  DFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVR 120

Query: 243 NNIV 246
           NN+V
Sbjct: 121 NNLV 124


>gi|260466634|ref|ZP_05812822.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029640|gb|EEW30928.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 236

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 108/244 (44%), Gaps = 31/244 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
           Q  +  S L +R DL           S+ M    LT  +GA  ++LV     Q++    I
Sbjct: 9   QSDTLGSRLTSRGDL----------TSFFME---LTAEIGADSYMLVAMVHDQDRNDARI 55

Query: 78  VSSDWPFDLVRCMA------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           VSS+W FD +  +       L++         RP  L   V    P+     +G + R  
Sbjct: 56  VSSNWIFDAIELIGKRLIAGLAQGTLTVAPGTRPRPL---VAAQAPDADGLVSGEEARLL 112

Query: 132 ---------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                    SL  +V R R+  +        I +  L +  L   Y  +           
Sbjct: 113 DVLGHAEIYSLRLNVGRQRLFALFSAASAGKIDQPALMKAQLKCCYALSHIPQLIAAAAM 172

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE ECL W+SEGKT+DE+AVILG+S NTVN+YI   ++K A   R+ AIA A+R
Sbjct: 173 QDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIR 232

Query: 243 NNIV 246
           + I+
Sbjct: 233 SGII 236


>gi|13472561|ref|NP_104128.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023307|dbj|BAB49914.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 265

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 112/257 (43%), Gaps = 21/257 (8%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q  +   +   +Q+ S  + L     L +R+         T     LT  +GA  ++LV
Sbjct: 15  LQHPDGRNDSGQKQQMSSPAALLQSDTLGSRLT---SRGDLTSFFMELTAEIGADSYMLV 71

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMA------LSEKDKYYNVLQRPTELFCPVFHTLPE 118
                Q++    IVSS+W FD +  +       L++         RP  L   V    P+
Sbjct: 72  AIVHDQDRNDARIVSSNWIFDAIELIGKRLIASLAQGALTVAPGIRPRPL---VAARAPD 128

Query: 119 NITPPAGMDNRYC---------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
                +G + R           SL  +V R R+  +        I +  L +  L   Y 
Sbjct: 129 ADGLVSGEEARLLDVLGHAEIYSLRLNVGRQRLFALFSAATSGQIDQPALMKAQLKCCYA 188

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +              L+ RE ECL W+SEGKT+DE+AVILG+S NTVN+YI   ++K A
Sbjct: 189 LSHIPQLIAAAAMQDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFA 248

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ AIA A+R+ I+
Sbjct: 249 ASNRAMAIATAIRSGII 265


>gi|319781696|ref|YP_004141172.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167584|gb|ADV11122.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 236

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 107/244 (43%), Gaps = 31/244 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
           Q  +  S L +R DL           S+ M+   LT  +GA  ++LV     Q++    I
Sbjct: 9   QSDTLGSRLTSRGDL----------TSFFMQ---LTAEIGADSYMLVAIVHDQDRNDARI 55

Query: 78  VSSDWPFDLVRCMA------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           VSS+W FD +  +       L++         RP  L   V    PE      G + R  
Sbjct: 56  VSSNWIFDAIELIGKRLIAGLAQGALTVAPGIRPQPL---VASRAPEADGLVTGEEARLL 112

Query: 132 ---------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                    SL  +V R R+  +        I +  L    L   Y  +           
Sbjct: 113 DVLGHAEIYSLRLNVGRQRLFALFSAATAGSIDQPALMRAQLKCCYALSHIPQLIAAAAM 172

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE ECL W+SEGKT+DE+AVILG+S NTVN+YI   ++K A   R+ AIA A+R
Sbjct: 173 QDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIR 232

Query: 243 NNIV 246
           + I+
Sbjct: 233 SGII 236


>gi|46370360|gb|AAS89968.1| transcriptional regulator [Agrobacterium vitis]
          Length = 230

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 17/230 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVRCMA 91
           +  +            M  LT++ GA  F+++       + L  S V ++WP D +    
Sbjct: 1   MRELSGYKTQFDVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGSSVITNWPADFLSEYD 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFH--------------TLPENITPPAGMDNRYCSLTFDV 137
           ++       +  R      PV                 L  ++    GM    C      
Sbjct: 61  MASLLSSSPMFNRLRNTSIPVVFDIHVVARERDPKTVELATDLFLRFGMPRGAC-FPVHD 119

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
           A    G + +  +        +  +  LA +  N          +  E LT RE+ECLTW
Sbjct: 120 AHGNRGAVNICGEMPAFSFVDMVLLHYLAGHVFNRLAEIRELDARVTETLTEREIECLTW 179

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + GKTS EIA I+G+S +T+N+Y+    RK  T  R+ A+A A+R +++
Sbjct: 180 TAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229


>gi|222147695|ref|YP_002548652.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221734683|gb|ACM35646.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 230

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 17/230 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVRCMA 91
           +  +            M  LT++ GA  F+++       + L  S V ++WP D +    
Sbjct: 1   MRELSGYKTQFDVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGSSVITNWPADFLSEYD 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFH--------------TLPENITPPAGMDNRYCSLTFDV 137
           ++       +  R      PV                 L  ++    GM    C      
Sbjct: 61  MASLLSSSPMFNRLRNTSIPVVFDVHVVARERDPKTVELATDLFLRFGMPRGAC-FPVHD 119

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
           A    G + +  +        +  +  LA +  N          +  E LT RE+ECLTW
Sbjct: 120 AHGNRGAVNICGEMPAFSFVDMVLLQYLAGHVFNRLAEIRELDARVTETLTEREIECLTW 179

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + GKTS EIA I+G+S +T+N+Y+    RK  T  R+ A+A A+R +++
Sbjct: 180 TAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229


>gi|218680630|ref|ZP_03528527.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 186

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 64/153 (41%), Positives = 88/153 (57%), Gaps = 2/153 (1%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ ++ Q +    +     ++ V+ L  R +LL R+  +  T      + ALTEYVGASH
Sbjct: 1   MDMDVIQASKGERQMSNFASAVVADLLPRDELLQRLHGVADTGRLQSGLRALTEYVGASH 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE 118
           +LL R DL QE  LD IVSSDWPFDLVR +A      Y     L++  ++F P F  +P+
Sbjct: 61  YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPD 120

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           N   P G   +YCSLTF+V R R+ LM LF +G
Sbjct: 121 NADVPDGASRQYCSLTFNVGRSRLALMFLFRRG 153


>gi|190890350|ref|YP_001976892.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695629|gb|ACE89714.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 248

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 32/256 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALT 53
           + V+N  D  R   V+ + +RSDL  R+I +                  +    R+    
Sbjct: 6   SRVMNGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGLPAKQRLVCEL 65

Query: 54  EYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           E  G+S+  F     D + +  LD I  S  P        LS    +      P + F P
Sbjct: 66  ENWGSSNAGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FAP 116

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQA 170
               L + I P +G      +    +  +  G +L          D + E+ G       
Sbjct: 117 FMTRLRDGILPFSG-----LAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMM 171

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++    +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +
Sbjct: 172 DLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDS 231

Query: 231 KTRSGAIAYAVRNNIV 246
             R  AIA A+R   +
Sbjct: 232 VNRIQAIAKAIRLGYI 247


>gi|327193021|gb|EGE59933.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 306

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 32/256 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALT 53
           + V+N  D  R   V+ + +RSDL  R+I +                  +    R+    
Sbjct: 64  SRVINGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGLPAKQRLVCEL 123

Query: 54  EYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           E  G S+  F     D + +  LD I  S  P        LS    +      P + F P
Sbjct: 124 ENWGPSNAGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FAP 174

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQA 170
               L + I P +G      +    +  +  G +L          D + E+ G       
Sbjct: 175 FMTRLRDGILPFSG-----LAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMM 229

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++    +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +
Sbjct: 230 DLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDS 289

Query: 231 KTRSGAIAYAVRNNIV 246
             R  AIA A+R   +
Sbjct: 290 VNRIQAIAKAIRLGYI 305


>gi|218514696|ref|ZP_03511536.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 240

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 96/253 (37%), Gaps = 32/253 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYV 56
           +N  D  R   V+ + +RSDL  R+I +                  +    R+    E  
Sbjct: 1   MNGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGLPAKQRLVCELENW 60

Query: 57  GASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           G+S+  F     D + +  LD I  S  P        LS    +      P + F P   
Sbjct: 61  GSSNAGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FAPFMT 111

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173
            L + I P +G      +    +  +  G +L          D + E+ G       ++ 
Sbjct: 112 RLRDGILPFSG-----LAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLL 166

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R
Sbjct: 167 SLDERRTAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNR 226

Query: 234 SGAIAYAVRNNIV 246
             AIA A+R   +
Sbjct: 227 IQAIAKAIRLGYI 239


>gi|86356299|ref|YP_468191.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280401|gb|ABC89464.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 248

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 96/256 (37%), Gaps = 32/256 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALT 53
           +  +N  D  R   V+ + +RSDL  R+I +                  +    R+    
Sbjct: 6   SRAMNGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGMPAKQRLVCEL 65

Query: 54  EYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           E  G S+  F     D + +  LD I  S  P        LS    +      P + F P
Sbjct: 66  ENWGLSNVGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FSP 116

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQA 170
               L + I P +G      +    +  +  G +L          D + E+ G       
Sbjct: 117 FMTRLKDGILPFSG-----LAFPVRLGAVGNGFILFTGDDIDPSSDTIVELHGRCCHVMM 171

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++    +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +
Sbjct: 172 DLLSLDERRSAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDS 231

Query: 231 KTRSGAIAYAVRNNIV 246
             R  AIA A+R   +
Sbjct: 232 VNRIQAIAKAIRLGYI 247


>gi|116250693|ref|YP_766531.1| LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255341|emb|CAK06416.1| putative LuxR/GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 245

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 15/232 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE   +  F+++         L  S V + WP +L+ 
Sbjct: 13  DDYVQEIAGLKTQFDIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGSTVITSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135
                       VL+R      P F+ +  +N +   G               R      
Sbjct: 73  LYDQEGLMVNSPVLRRLRTSARPFFYDMSRQNWSRDDGKSILVASLFERFKMMRCAYFPT 132

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194
                  G +             + E+  +A +  +      ++       LT RE++CL
Sbjct: 133 HEPSGLRGAVSFAGDREPFSSAEMRELCYIAIHVFDRLAEIRNLDTRMTDTLTDREIDCL 192

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 193 NWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|218661906|ref|ZP_03517836.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 245

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         +  +TE      F+++         L  S V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGSTVLTSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135
                       VL+R      P F+ +  ++     G               R      
Sbjct: 73  LYDQEGLMVDSPVLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAYFPT 132

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194
             A    G +             + E+  +A +  +      ++       LT RE++CL
Sbjct: 133 HEASGLRGAVSFAGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCL 192

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 193 NWTAAGKTSAEIAEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|222085036|ref|YP_002543565.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722484|gb|ACM25640.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 245

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 89/240 (37%), Gaps = 14/240 (5%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-LFQEQKLDSIVS 79
             V   P   D +  +  L         M  +T+      F++V    L   +   + V 
Sbjct: 5   VQVGRSPRGEDYIDEIAGLKTQFDVFRFMKRVTDAYRCRAFMVVNLPSLTSFELQSNSVI 64

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM------------D 127
           ++WP +L+         +   V +R      P  +    N                    
Sbjct: 65  NNWPAELLTVYDQEGLLRNSTVSRRLRVSTLPFVYDTAANTNRDDSKIQLRASLFERFRM 124

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFEL 186
            R   L    A    G ++L         +   ++  +A +  +      ++       L
Sbjct: 125 ARSICLPTHDASGIRGAVILSGDREAFTAEETKDLCYIAIHVFDRLAEIRNLDVRIVDTL 184

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 185 TDRELDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRVGLI 244


>gi|218673534|ref|ZP_03523203.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 245

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 85/232 (36%), Gaps = 15/232 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE      F+++         L  S V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGSTVITSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDN------------RYCSLTF 135
                       VL+R      P F+ +  +N     G               R      
Sbjct: 73  LYDQEGLMVNSPVLRRLRTSARPFFYDMSRQNWPRDDGKSALVVGLFERFRMTRCAYFPT 132

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194
                  G +             + E+  +A +  +      ++       LT RE++CL
Sbjct: 133 HEPSGLRGAVSFAGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRITDALTDREIDCL 192

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 193 NWTAAGKTSAEIAEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|218463393|ref|ZP_03503484.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 245

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         +  +TE      F+++         L  S V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGSTVLTSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135
                       VL+R      P F+ +  ++     G               R      
Sbjct: 73  LYDQEGLMVDSPVLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAYFPT 132

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194
             A    G +             + E+  +A +  +      ++       LT RE++CL
Sbjct: 133 HEASGLRGAVSFAGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTEREIDCL 192

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 193 NWTAAGKTSAEIAEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|209548111|ref|YP_002280028.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533867|gb|ACI53802.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 244

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 87/232 (37%), Gaps = 15/232 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         +  +TE   +  FL++         +  S V + WP +L+ 
Sbjct: 12  DDYIKEIAGLKTQFDIFRFLKRVTEAYRSRAFLVLNLPPITSLDIQGSTVITSWPAELLA 71

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135
                       VL+R      P F+ +  EN +   G               R      
Sbjct: 72  LYDQEGLLVNSPVLRRLRTSARPFFYDMSRENWSRDDGKSILVASLFERFRMMRGAYFPT 131

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194
                  G +             + E+  ++ +  +      ++       LT RE++CL
Sbjct: 132 HEPSGVRGAISFAGDREPFSPAEMRELCYISIHVYDRLAEIRNLDTRITDTLTDREIDCL 191

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 192 NWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243


>gi|262283888|gb|ACY40752.1| VisR [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 98/257 (38%), Gaps = 32/257 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYAL 52
               ++  ++ RT  V+ + +RSDL  R+I +                  +    R+   
Sbjct: 5   AGRTMSSAEQLRTVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGSGLPAKQRLVCE 64

Query: 53  TEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
            E  G+S+  F     D + +  LD I  S  P        LS    Y      P + F 
Sbjct: 65  LENWGSSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FS 115

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQ 169
           P    L + I P +G      +    +  +  G +L          D + E+ G      
Sbjct: 116 PFMTRLQDGILPFSG-----LAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIM 170

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            ++    +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  
Sbjct: 171 MDLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLD 230

Query: 230 TKTRSGAIAYAVRNNIV 246
           +  R  AIA A+R   +
Sbjct: 231 SVNRIQAIAKAIRLGYI 247


>gi|116250469|ref|YP_766307.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255117|emb|CAK06191.1| regulator of flagellar and motility genes, also regulates rem
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 248

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 98/257 (38%), Gaps = 32/257 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYAL 52
               ++  ++ RT  V+ + +RSDL  R+I +                  +    R+   
Sbjct: 5   AGRTMSSAEQLRTVRVNRISSRSDLFPRLIAMQKLAEAQGFAIFRVSGSGLPAKQRLVCE 64

Query: 53  TEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
            E  G+S+  F     D + +  LD I  S  P        LS    Y      P + F 
Sbjct: 65  LENWGSSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FS 115

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQ 169
           P    L + I P +G      +    +  +  G +L          D + E+ G      
Sbjct: 116 PFMTRLQDGILPFSG-----LAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIM 170

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            ++    +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  
Sbjct: 171 MDLLSLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLD 230

Query: 230 TKTRSGAIAYAVRNNIV 246
           +  R  AIA A+R   +
Sbjct: 231 SVNRIQAIAKAIRLGYI 247


>gi|241203295|ref|YP_002974391.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857185|gb|ACS54852.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 244

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 15/232 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE   +  F+++         L  S V + WP +L+ 
Sbjct: 12  DDYVQEIAGLKTQFDIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGSTVITSWPAELLA 71

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135
                       VL+R      P F+ +  +N++   G               R      
Sbjct: 72  LYDQEGLMVNSPVLRRLRTSARPFFYDMSRQNLSRDDGKSILVASLFERFKMMRCAYFPT 131

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194
                  G +             + E+  ++ +  +      ++       LT RE++CL
Sbjct: 132 HEPSGLRGAISFAGDREPFSPAEMRELCYISIHIFDRLAEIRNLDTRMTDTLTDREIDCL 191

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 192 NWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243


>gi|241203093|ref|YP_002974189.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856983|gb|ACS54650.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 248

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 97/253 (38%), Gaps = 32/253 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYV 56
           ++  ++ R   V+ + +RSDL  R+I +                  +    R+    E  
Sbjct: 9   MSSAEQLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGSGIPAKQRLVCELENW 68

Query: 57  GASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           G+S+  F     D + +  LD I  S  P        LS    Y      P + F P   
Sbjct: 69  GSSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FSPFMT 119

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173
            L + I P +G      +    +  +  G +L          D + E+ G       ++ 
Sbjct: 120 RLQDGILPFSG-----LAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLL 174

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R
Sbjct: 175 SLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNR 234

Query: 234 SGAIAYAVRNNIV 246
             AIA A+R   +
Sbjct: 235 IQAIAKAIRLGYI 247


>gi|218681045|ref|ZP_03528942.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 244

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 15/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFD 85
           P   D L  +  L         +  +TE   +  F+++         +  S V + WP +
Sbjct: 9   PEEDDYLKEIAGLKTQFDIFRFLKRVTEAYRSRAFMVLNLPPITSLDIQGSTVITSWPAE 68

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCS 132
           L+             VL+R      P  + +  +N +   G               R   
Sbjct: 69  LLALYDQEGLLVNSPVLRRLRTSARPFSYDMSRDNWSRDDGKSVLVTALFERFRMMRGAY 128

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREV 191
                     G +             + E+  +A +  +      ++       LT RE+
Sbjct: 129 FPTHEPSGLRGAVSFSGDRETFSPAEMRELCYIAVHVYDRLAEIRNLDARITDTLTDREI 188

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 189 DCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243


>gi|86356503|ref|YP_468395.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280605|gb|ABC89668.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 248

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 15/232 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         +  +TE   +  F+++         L  S V + WP +L+ 
Sbjct: 16  DDYINEIAGLKTQFDIFRFLKRVTEAYRSRAFMVLNLPPTTSLDLQGSTVITSWPAELLA 75

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMD------------NRYCSLTF 135
                       VL+R      P F+ +  E  +   G               R      
Sbjct: 76  LYDQEALMVNSPVLRRLRTSTRPFFYDMTRETWSRDDGKSVLVTGLFERFRMMRGAYFPT 135

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194
             A    G +             + E+  +A +  +      ++       LT RE++CL
Sbjct: 136 HEASGLRGAVSFAGDREPFSAAEMRELCYIAIHVFDRLAEIRNLDTRMTDSLTDREIDCL 195

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 196 NWTAAGKTSAEIAEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 247


>gi|82940563|emb|CAJ44292.1| putative transcription regulator protein MotS, LuxR family
           [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 96/253 (37%), Gaps = 32/253 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYV 56
           ++  ++ R   VS + +RSDL  R+I +                  +    R+    E  
Sbjct: 9   MSSAEQLRMVRVSRISSRSDLFPRLIAMQKLVDAQGFAIFRVSGSGLPAKQRLVCELENW 68

Query: 57  GASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           G S+  F     D + +  LD I  S  P        LS    Y      P + F P   
Sbjct: 69  GPSNAGFGKAFTDAYGDILLDHIDKSLLP--------LSWAGGYDRAAPGPAD-FAPFMT 119

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173
            L + I P +G      +    +  +  G +L          D + E+ G       ++ 
Sbjct: 120 RLQDGILPFSG-----LAFPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLL 174

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R
Sbjct: 175 SLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNR 234

Query: 234 SGAIAYAVRNNIV 246
             AIA A+R   +
Sbjct: 235 IQAIAKAIRLGYI 247


>gi|218508993|ref|ZP_03506871.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Brasil 5]
          Length = 245

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE      F+++         L  + V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDN------------RYCSLTF 135
                       VL+R      P  + +  +N +   G  +            R      
Sbjct: 73  LYDQEGLMVNSPVLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 132

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194
                  G +             + E+  +A +  +      ++       LT RE++CL
Sbjct: 133 HEPSGLRGAVSFAGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCL 192

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 193 NWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|327188113|gb|EGE55336.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 245

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE      F+++         L  + V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDN------------RYCSLTF 135
                       VL+R      P  + +  +N +   G  +            R      
Sbjct: 73  LYDQEGLMVNSPVLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 132

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194
                  G +             + E+  +A +  +      ++       LT RE++CL
Sbjct: 133 HEPSGLRGAVSFAGDREPFSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCL 192

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 193 NWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|190890568|ref|YP_001977110.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695847|gb|ACE89932.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 246

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE      F+++         L  + V + WP +L+ 
Sbjct: 14  DDYIKEIAGLKTQFDIFRFMKRMTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 73

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDN------------RYCSLTF 135
                       +L+R      P  + +  +N +   G  +            R      
Sbjct: 74  LYDQEGLMVNSPILRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 133

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194
                  G +             + E+  +A +  +      ++       LT RE++CL
Sbjct: 134 HEPSGLRGAVSFAGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCL 193

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 194 NWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 245


>gi|291287188|ref|YP_003504004.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884348|gb|ADD68048.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 245

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 5/191 (2%)

Query: 59  SHFLLVRWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           +H ++   + F ++  D +V   D+  D V    L+ K+    V   P  +   +F    
Sbjct: 56  THKIIYSDNAFMQRTDDYVVPMEDYAADKVFPQILAGKE-VIKVTNSPVYVHDVIFQHAG 114

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKS 175
              + P   ++RY     +    +I  +++F         +  +I   L A    N  + 
Sbjct: 115 NAGSKPCENEDRYILAKMN-HETQIASLIVFVVNAKESEGKFEQIACYLHAHLLTNYVRI 173

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V      +L+GRE   LTW+  GKTS E+A IL I+ NTVN +I +I  K     R  
Sbjct: 174 LSVSNENIIKLSGREKSVLTWLKYGKTSWEVAKILNITENTVNFHIKNIKNKLNATNRQH 233

Query: 236 AIAYAVRNNIV 246
           A+A A+  +I+
Sbjct: 234 AVAIAIAKSII 244


>gi|325292093|ref|YP_004277957.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059946|gb|ADY63637.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 246

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 105/246 (42%), Gaps = 19/246 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS- 76
           Q+T   +      D +  +  L+        +  LTE  G   F+++        +L   
Sbjct: 2   QKTETAAVQSIGVDCVREIAGLNTQFDIFRFLKRLTEAWGFKAFMVLDLSAEMASELSQC 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------PPAGMDN 128
            + + WP +L++        +   V+ +  +   P   +L   ++        P  G+  
Sbjct: 62  TIITSWPAELLQRYDEEGMLQRSLVMAQLKKSTTPFSVSLDFLVSGDENAPKKPVIGLFE 121

Query: 129 RYC---SLTFDVARI--RIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHW 180
           R+    S+ F V  I    G +        +   +L E+  ++++   + +  +  D+  
Sbjct: 122 RFDMINSVWFPVHDITTMRGAVSFSGNKTTLPTSQLAELFYISSHIFARLSEIRRLDLRV 181

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   L  RE++CL W + GKTS EIA I+ +S +T+N+Y+    +K  T  R+ A+A A
Sbjct: 182 PE--TLNEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKA 239

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 240 LRVGLI 245


>gi|209547915|ref|YP_002279832.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533671|gb|ACI53606.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 248

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 32/253 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYV 56
           ++  ++ R   V+ + +RSDL  R+I +                  +    R+    E  
Sbjct: 9   MSSAEQSRMVRVNRISSRSDLFPRLIAMQKLADAHGFAIFRVSGSGIPAKQRLVCELENW 68

Query: 57  GASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           G+S+  F     D + +  L+ I  S  P        LS           P + F P   
Sbjct: 69  GSSNAGFGKAFTDAYGDALLEHIEKSLLP--------LSWAGGCDRAAPGPAD-FAPFMT 119

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173
            L + I P +G      +    +  +  G ++          D + E+ G       ++ 
Sbjct: 120 RLQDGIVPFSG-----LAFPVRLGAVGNGFIVFTGDEIDPSSDTIVELHGRCCHIMMDLL 174

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R
Sbjct: 175 SLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNR 234

Query: 234 SGAIAYAVRNNIV 246
             AIA A+R   +
Sbjct: 235 IQAIAKAIRLGYI 247


>gi|163758447|ref|ZP_02165535.1| putative LuxR/GerE family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284736|gb|EDQ35019.1| putative LuxR/GerE family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 245

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-WDLFQEQKLDSIVSSDWPFDLVRCM 90
           +  R+            +  +T++   ++F +    D       DSI+ +  P DLVR  
Sbjct: 15  MRQRLNNCTTQFDLLRLLREVTQFHQYTYFFIASGCDGATRSLADSIIITSAPSDLVRRY 74

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT-----PPAGMDNR---------YCSLTFD 136
             +   +   +++       P+   L E IT       A +D+          + +  + 
Sbjct: 75  DETGLMERSPLMRALGGRGTPLQCRLDETITAFTTEQQAALDDFSAEFNIDCCFITPVYH 134

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLT 195
                  +  L  + ++   +    + ++++      +       K D  LT RE ECL 
Sbjct: 135 RDHGPAAVCFLGKRNQMSFSEA-ANLAMISSLAHQKLRRVSAQPSKADSPLTERERECLV 193

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W S GKTS EIA IL +S +TVN+Y+ +  RK     R+ A+A A+R   +
Sbjct: 194 WTSSGKTSVEIARILSLSEHTVNHYLNNAARKLDAVNRTQAVALAIRQGFI 244


>gi|170727337|ref|YP_001761363.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812684|gb|ACA87268.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 250

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 31/207 (14%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQK---LDSIVSSDWPF-------DLVRCMALSEKDKYY 99
             ++   G     +   +++Q++K   +D +VS    F        +   + LSE    +
Sbjct: 65  RVVSSGFGFESKSVEWDNIYQKKKFQYIDPVVSCSASFRRSFNWASVPSMITLSEVQ--F 122

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
           N L+R  E+                G+       +F   +I   L +    G  +  ++L
Sbjct: 123 NFLERAQEM----------------GLKEGASIGSFSTRQIYKELTITSVCGCSLNPEQL 166

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             + L+ A  A   K   +   K   LTGRE E L W SEGK+S EI +I  I+  TV  
Sbjct: 167 ASLELINAVSAQAMKRLILPAEK---LTGRESEILAWSSEGKSSWEIGMICSITERTVKF 223

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +I +K   + R+ AI  A+R  ++
Sbjct: 224 HLKNIYKKLNVQNRAQAIVCAIRLGLI 250


>gi|220921013|ref|YP_002496314.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945619|gb|ACL56011.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 245

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 83/236 (35%), Gaps = 21/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRC 89
           D++ R+       +    +     Y G   F++      Q + L D  +   WP +  + 
Sbjct: 10  DVIGRLQAASSQTALFSELKEAGRYFGYDSFIVTGLPHRQGENLNDCSLLVGWPMEWAKR 69

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPE------------NITPPAGMDNRYCSLTFDV 137
                      V+ +      P                   N +P  G++  +C +    
Sbjct: 70  YTERRYIHVDPVIAQIRRTLDPFMWDEAPYDRSDPGPATVMNESPSFGLNQGFC-VPIHR 128

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-------TGRE 190
              R   +        +  D    + L+A Y  +  ++         +        + RE
Sbjct: 129 IDGREAGVSFGASRMDLSDDARAGLHLVAIYAFSAARALSAMPSNPADPERQPPRCSARE 188

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EC+ W + GKT  EI+ IL +S+ TV  Y+ +  RK     R   IA A+R+ ++
Sbjct: 189 IECMRWAAAGKTGWEISEILSLSQRTVEAYLNNAARKLGVANRVHLIAEAIRHGLI 244


>gi|170745593|ref|YP_001776815.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170752150|ref|YP_001783296.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659247|gb|ACB28299.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659277|gb|ACB28328.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 248

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 87/235 (37%), Gaps = 19/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRC 89
           D++ R+      V     +       G   FL+        + L D  + S WP +  R 
Sbjct: 13  DIVHRLRRASTDVDVYSELRRSGAIFGYDVFLIAGLPRAPHENLYDCSLISGWPPEWGRR 72

Query: 90  MALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPPAGMD----NRYCSLTFDVA 138
                      V++       P            PE +           N    + F   
Sbjct: 73  YQERRHMHVDPVIRHIRGTTDPFLWQEAVDAQVTPEGMVVMEEARAFSLNEGFCVPFHQI 132

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGREV 191
                 +    +   + +D    + L+A Y  +  K+     G           LTGRE 
Sbjct: 133 DGTEAGVSFGGEQVRLSQDERAALHLVAIYAMSTAKAIARRRGLSEDDGTPPSPLTGREA 192

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W S GK++ EI VIL IS  TV +++ S +RK  + TR+ A+A A+R +I+
Sbjct: 193 ECLKWSSTGKSAWEIGVILSISTRTVEHHLGSAVRKLNSVTRTQAVAEALRRHII 247


>gi|163761139|ref|ZP_02168216.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162281690|gb|EDQ31984.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 246

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 80/232 (34%), Gaps = 18/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSI-VSSDWPFDLV 87
           L   +  +  T      +       G  +F ++          Q +  I V S WP +L+
Sbjct: 13  LYEPISKIRTTFDAIQVLRKTCLSYGFRYFSVLTIPAMVSESAQVMSHISVISSWPPELI 72

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV---------- 137
                 E  K   VL+R  +   P+   +    +   G +       F            
Sbjct: 73  ADYDRLELGKNSPVLERLRKQITPLLFEVENIDSERDGAEQASAKELFTRFGVTMGVYFP 132

Query: 138 ---ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVEC 193
               R +   +      + +    L  + + A    +       +       L  RE E 
Sbjct: 133 VQDGRGQRFAVCFMGARKPLSATELPSLAMFATLLVDQLSQITANEDTAKLVLNARETEV 192

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L W +EGKTS EIA I G+S +TVN+Y     +K     R+ A+  A+R  +
Sbjct: 193 LQWTAEGKTSAEIARITGLSEHTVNHYATIATQKLGCSNRTQAVVQAIRLGL 244


>gi|13474692|ref|NP_106261.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025447|dbj|BAB52047.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 243

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 18/234 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---LFQEQKLDSIVSSDWPFDLV 87
           + + ++       +   ++  +T   G +  +           EQ+   ++  DWP + +
Sbjct: 9   EYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSEQQKQHVLLCDWPVEWL 68

Query: 88  RCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTFDV 137
                     +  V+    +L  P           F      +   AG       L F +
Sbjct: 69  ERYVARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSGEVMGDAGAFKLRDGLAFPL 128

Query: 138 A--RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVE 192
                +I ++ L  +   +       + L++ Y             K     ELT RE E
Sbjct: 129 ITLDGQIVMVSLGGEAMQLSAAEFGLVSLVSTYAVGRAMQLHTMATKTIDHIELTPRERE 188

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R   +
Sbjct: 189 CLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|15889561|ref|NP_355242.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157444|gb|AAK88027.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 238

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDL 86
            ++ L   +        W   +  +    G +H  L+R    Q    L  +V S  P  +
Sbjct: 6   RQARLCRDLSAAADKSQWLEALQEVMHAFGYAHVTLLRLPGGQNAFALPLVVESSLPVWV 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPE----NITPPAGMDN-------RYCSLTF 135
           V  M          V++R      P + +L +      +    +++           +  
Sbjct: 66  VNAMTKDGALGDCPVIKRGASSMMPQYWSLEDPEMACGSLVDAVNSVGSMGITSGLMVPV 125

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECL 194
           +       LM        + +  L E+ ++A +    + +   V       LT RE++ +
Sbjct: 126 NGMSGNRHLMNFAGDRDTLPQASLNELCMIALHALETYDRLCRVASKGPSPLTKRELDVV 185

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS EIA +L IS +TVN Y+ + MRK     R+  +A  +R  ++
Sbjct: 186 RWTAQGKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLI 237


>gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 222

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 13/207 (6%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           ++++Y+  S ++++     QE     +V    P  +V  +A+ E D +     V  +P  
Sbjct: 17  SISDYLEMSGYMVISATNGQEAL--ELVEKHQPHLIVTDIAMPEMDGFELVKRVRSQPIF 74

Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV       +  E I       + Y    F++  + + +  L  + ++I  +    I
Sbjct: 75  RLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLLERSQLIEAEWRSRI 134

Query: 163 G-LLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              L+ + ++  K +  H     +  LT RE + L  ++EG ++ +I   L +S  TV  
Sbjct: 135 NEPLSNHTSSSHKRHHFHSFSTTNIHLTEREQQVLNLLTEGLSNIKIGDSLHLSSRTVEK 194

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           Y++S++RKT +  R+  + +A+ N+++
Sbjct: 195 YVSSLLRKTDSSNRAELVRFALENDLI 221


>gi|319785576|ref|YP_004145052.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171464|gb|ADV15002.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 243

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 22/236 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFD 85
           + + ++       +   R+  +T   G +  +            Q+++   ++  DWP +
Sbjct: 9   EYIDQLQHAATAAAVCERLLGITSDFGLTALMAGTVPQPGTPAGQQKQ--HVLLCDWPGE 66

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR------------YCSL 133
            +          +  V+    +L  P                                + 
Sbjct: 67  WLERYVARNYVDHDPVVSHMKQLQAPFQWHEASQGIRIDKSSGEVMGDAGAFKLRDGLAF 126

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGRE 190
                  +I ++ L  +   +      ++ L++ Y             +  +   LT RE
Sbjct: 127 PLITLDGQIVMVSLGGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMANRTIDHIVLTPRE 186

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R   +
Sbjct: 187 RECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|166798330|gb|ABY89693.1| transcriptional regulator [Mesorhizobium loti]
          Length = 243

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 22/236 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFD 85
           + + ++       +   R+  +T   G +  +            Q+++   ++  DWP +
Sbjct: 9   EFIDQLQHAATAAAVCERLLGITADFGLTALMAGTVPQPGTPAGQQKQ--HVLLCDWPGE 66

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR------------YCSL 133
            +          +  V+    +L  P                                + 
Sbjct: 67  WLERYVARNYVDHDPVVSHMKQLQAPFQWREASQSIRIDKSSGEVMGDAGAFKLRDGLAF 126

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGRE 190
                  +I ++ L  +   +      ++ L++ Y             K  +   LT RE
Sbjct: 127 PLVTLDGQIVMVSLGGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMASKSIDHIVLTPRE 186

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R   +
Sbjct: 187 RECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|209526062|ref|ZP_03274594.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209493450|gb|EDZ93773.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 222

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 13/207 (6%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           ++++Y+  S ++++     QE     +V    P  +V  +A+ E D +     V  +P  
Sbjct: 17  SISDYLEMSGYMVISATNGQEAL--ELVEKHQPHLIVTDIAMPEMDGFELVKRVRSQPGF 74

Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV       +  E I       + Y    F++  + + +  L  + ++I  +    I
Sbjct: 75  RLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELDELGVVIRALLERSQLIEAEWRSRI 134

Query: 163 G-LLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              L+ + +  +K +  H     +  LT RE + L  ++EG ++ +I   L +S  TV  
Sbjct: 135 NEPLSNHTSPRYKRHHFHSLSTTNIHLTEREQQVLNLLTEGLSNVKIGNSLHLSSRTVEK 194

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           Y++S++RKT +  R+  + +A+ N+++
Sbjct: 195 YVSSLLRKTDSSNRAALVRFALENDLI 221


>gi|163758577|ref|ZP_02165664.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162283867|gb|EDQ34151.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 237

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 84/232 (36%), Gaps = 15/232 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-FQEQKLDSIVSSDWPFDLVR 88
            DL  R+          + + ALT       F +      F ++    I  S+ P + + 
Sbjct: 5   EDLFQRLKTATTEHELAVSLQALTSEFDFRFFSIFDIPATFSDRLSKHIRLSNLPSEYIE 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF------------- 135
                      +V     +   P+   L   +      + +     F             
Sbjct: 65  EYDSLNLLSNSSVFAMLRQSTAPMTRFLDLAVKERPTEEQQVMRAVFEKHNMTMGVYFPV 124

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECL 194
             +  R   M  +     +       +GL   +  + + K  +    K   +T RE+E L
Sbjct: 125 HGSNGRRAAMAFYGTRPALSFAETGVLGLCVLHAFDAYSKMTNKTGTKANGITTRELEVL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS EIA IL +S +TVN Y+ S MRK     R+  +A A+R +++
Sbjct: 185 HWAANGKTSTEIAAILSLSDHTVNTYMNSAMRKLDCVNRTQLVAKALRLHLI 236


>gi|251799733|ref|YP_003014464.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547359|gb|ACT04378.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 242

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +  T     D    SL   +  +  G   + PK  G++I + R    L E+G++
Sbjct: 100 VFETLRKGATGYLLKDMEAESLINAIRSVVNGHAYIHPKVTGKLINQLRRMTYLDEMGVI 159

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +   A M        G+D  LT RE E L  ++EGK++  I   L IS  TV N+++SI+
Sbjct: 160 SGAAAGMEPGVKFVAGEDNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 219

Query: 226 RKTATKTRSGAIAYAVRNN 244
           +K     R+ A+  +++  
Sbjct: 220 QKMEVDDRTQAVIQSIKYG 238


>gi|260461917|ref|ZP_05810162.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259032164|gb|EEW33430.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 243

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 22/236 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFD 85
           + + ++       +   ++  +T   G +  +            Q+++   ++  DWP +
Sbjct: 9   EYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPAGQQKQ--HVLLCDWPVE 66

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR------------YCSL 133
            +          +  V+    +L  P                                + 
Sbjct: 67  WLERYVARNYVDHDPVVSHMKQLQAPFQWREAAQDIRIDKSSGEVMGDAGAFKLRDGLAF 126

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGRE 190
                  +I ++ L  +   +       + L++ Y            G      ELT RE
Sbjct: 127 PLITLDGQIVMVSLGGEAVELSAAEFGLVSLVSTYAVGRAMQLHTMSGNTIDHVELTPRE 186

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R   +
Sbjct: 187 RECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
          Length = 222

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           ++++Y+  S + ++     QE     +V    P  +V  +A+ E D +     V  +P  
Sbjct: 17  SISDYLEMSGYFVISATNGQEAL--QLVEKHQPHLIVTDIAMPEMDGFELVKRVRSQPGF 74

Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV       +  E I       + Y    F++  + + +  L  + ++I  +    I
Sbjct: 75  RLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLLERSQLIEAEWRSRI 134

Query: 163 G-LLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              L+ + ++  K +  H     +  LT RE + L  ++EG ++ +I   L +S  TV  
Sbjct: 135 NEPLSNHTSSSHKRHHFHSLSTTNIHLTEREQQVLNLLTEGLSNIKIGDSLHLSSRTVEK 194

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           Y++S++RKT +  R+  + +A+ N+++
Sbjct: 195 YVSSLLRKTDSSNRAELVRFALENDLI 221


>gi|166850622|gb|ABY91283.1| transcriptional regulator [Mesorhizobium huakuii]
          Length = 243

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 84/236 (35%), Gaps = 22/236 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFD 85
           + + ++       +   ++  +T   G +  +            Q+++   ++  DWP +
Sbjct: 9   EYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSGQQKQ--HVLLCDWPVE 66

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTF 135
            +          +  V+    +L  P           F    + +   AG       L F
Sbjct: 67  WLERYVARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSDEVMGDAGAFKLRDGLAF 126

Query: 136 DVA--RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGRE 190
            +     +I ++ L  +   +       + L++ Y                   ELT RE
Sbjct: 127 PLITLDGQIVMVSLGGEAVQLSGAEFGLVSLVSTYAVGRAMQIHTMATSTIDHIELTPRE 186

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R   +
Sbjct: 187 RECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|27376173|ref|NP_767702.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349312|dbj|BAC46327.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 242

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 13/229 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D +  +            + A     G    ++       ++    +++  WP       
Sbjct: 12  DFIEGLGVYRKVPDAMNALEAAFGRFGFETIIVTGLPNPDQRFAQMVLAKRWPAGWFNLY 71

Query: 91  ALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDN-----------RYCSLTFDVA 138
             +  D++  V++   +   P  +   P +                    R   +     
Sbjct: 72  TQNNYDRFDPVVRLCRQSVNPFEWSEAPYDAELEPSAAEVMNRAGDFRMSRGFIVPIHGL 131

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWI 197
                 + L      +       + L+A Y  +  +   +        LT RE E ++W 
Sbjct: 132 TGYEAAVSLGGVHLDLNPRSKPALHLMAMYGFDHIRRLLEPTPYPSTRLTPREREVISWA 191

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S+GK++ EI  IL I++ T   ++A+  RK     R+ A+A A+R+ I+
Sbjct: 192 SQGKSAWEIGEILHITQRTAEEHLATAARKLGAVNRTHAVALAIRHKII 240


>gi|307152023|ref|YP_003887407.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306982251|gb|ADN14132.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 226

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 19/212 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           A+ +Y+  S + +V     QE    S++ +  P  LV  + +   D Y     V QRP  
Sbjct: 17  AVKDYLELSGYSVVTAKNGQEAL--SLLETYHPHLLVSDIKMPRTDGYELVAQVRQRPEF 74

Query: 108 LFCPVFHTLPENITP------PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
              PV     ++ T        AG D  Y    F++  +   +  L  + +I+  +  ++
Sbjct: 75  RLLPVVFLTEKSTTHERIRGYQAGCDV-YLPKPFEMEELGAVIRNLLERSQIMESEWRYK 133

Query: 162 IGLLAAYQANMFKS-------YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
              L   QA + KS                ELT RE + L  +++G ++ EI   L +S 
Sbjct: 134 NRQLQEKQAELKKSQPPPPLPELPTLNPPPELTAREKQVLELLAQGLSNVEIGQQLHLSP 193

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  Y++S++RKT T  R+  + +A+ +++V
Sbjct: 194 RTVEKYVSSLLRKTETNNRAELVRFALEHHLV 225


>gi|48375112|gb|AAT42219.1| PcoR [Pseudomonas fluorescens]
          Length = 234

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 17/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L  ++  +   +W+  +++L +  G S  L             S + S++         
Sbjct: 1   MLEEILMCETLDAWSQVLFSLAKDCGFSSVLFGVKPTISTPFSSSTIISNYSKSWRAFYD 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPP---------AGMDNRYCSLTFDVARIRI 142
            +   +   V+        P+  T    I PP         A        +     R   
Sbjct: 61  SNACYEVDPVVFHCLNSSLPLVWTKENFINPPELQLYEAASASGVRSGLCMPIHGPRGEF 120

Query: 143 GLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECL 194
           G++      +    +I    L +  L+  Y    F+       K+FE    LT RE+ECL
Sbjct: 121 GMLNFITDEKSPADLINAQGLPQFALMRDYLIESFQKLQNASEKEFETPPXLTARELECL 180

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W++ GKTS EI+ IL  +  TVN ++ + MRK   ++R  A+   +R+ +V
Sbjct: 181 KWVAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232


>gi|218514308|ref|ZP_03511148.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 254

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 15/231 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE      F+++         L  + V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDN------------RYCSLTF 135
                       VL+R      P  + +  +N +   G  +            R      
Sbjct: 73  LYDQEGLMVNSPVLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 132

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECL 194
                  G +             + E+  +A +  +      ++       LT RE++CL
Sbjct: 133 HEPSGLRGAVSFAGDREPFSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCL 192

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A     ++ +
Sbjct: 193 NWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQARRQGAQDRL 243


>gi|13507195|gb|AAK28504.1| MupR [Pseudomonas fluorescens]
          Length = 234

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 17/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L  ++  +   +W+  ++AL +  G S  L             S + S++         
Sbjct: 1   MLEDILMCETLEAWSKVLFALAKEYGFSSVLFGVKPTISTPFSSSTIISNYSRSWRSIYD 60

Query: 92  LSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCS---LTFDVARIRI 142
            +   +   V+        P       F   PE     A   +  CS   +     R   
Sbjct: 61  ANAYYEVDPVVFHCLNSSLPLVWTKENFINKPEQQLYEAASASGVCSGLCMPIHGPRGEF 120

Query: 143 GLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECL 194
           G++      +    +I    L +  L+  Y    F+       K+ E    LT RE+ECL
Sbjct: 121 GMLNFITDEKSPADVIRSKGLPQFALMRDYLIESFQKIQSAAEKEVEKPPKLTARELECL 180

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W++ GKTS EI+ IL  +  TVN ++ + MRK   ++R  A+   +R+ +V
Sbjct: 181 KWVAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232


>gi|294142230|ref|YP_003558208.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328699|dbj|BAJ03430.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 250

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 33/208 (15%)

Query: 50  YALTEYVGASHFLLVRWDLFQE---QKLDSIVSS--------DWPFDLVRCMALSEKDKY 98
             ++   G         +++Q+   Q +D IVS         +W   +   M+LSE    
Sbjct: 65  RVVSSGFGFEAKSAEWGNIYQKNKFQYIDPIVSCSKSIRSSFNWT-SVPSMMSLSESQ-- 121

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
            N L++  E+                G+       +F    I   L +    GR +  ++
Sbjct: 122 LNFLEQAEEM----------------GLKEGASIGSFSSRHIYKELNITSVSGRSLNSEQ 165

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L  + L+    A              ELT RE E L W SEGK+S EI +I  I+  TV 
Sbjct: 166 LATLELINTVSAQAMTRL---TNPVEELTKREREILAWSSEGKSSWEIGMICSITERTVK 222

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ +I +K   + R+ AI  A+R  ++
Sbjct: 223 FHLKNIYKKLNVQNRAQAIVCAIRQGLI 250


>gi|150395665|ref|YP_001326132.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150027180|gb|ABR59297.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 246

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 78/225 (34%), Gaps = 15/225 (6%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEK 95
             ++        +  ++E  G   F+++         L +  + + WP D +R    +  
Sbjct: 21  GSIENEDDVRGALGRVSEGFGFRGFMVLAIPDSGSHSLTAQALMTTWPMDFLRRYDSARL 80

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-------------LTFDVARIRI 142
                V+QR      P  +   +                           L    A    
Sbjct: 81  IDGSPVIQRLRRSTIPFTYDAHQLARGRVDGKGEAAICVFEQANMPRGVYLPVHDAAGHR 140

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGK 201
             +        +  D L E+ L A    +          +    L+ RE+ECL W + GK
Sbjct: 141 AAVAFGGDRSAVSGDELQELNLWAGLLYSRLSEVRTRDRRGPGSLSRREIECLRWAAAGK 200

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ E+A I+ +S  TVN+Y+    RK  +  R   +A A+R  ++
Sbjct: 201 TTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245


>gi|316931698|ref|YP_004106680.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315599412|gb|ADU41947.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           DX-1]
          Length = 243

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 24/232 (10%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D + R+           +  +L    G + +++           +  +++ WP D    +
Sbjct: 18  DAVERLDAPA----LVSQFESLIASCGFTAYIIAGLPSRNAGLPELTLANGWPRDW-FDL 72

Query: 91  ALSEKDKYYNVLQRPTELFC---------------PVFHTLPENITPPAGMDNRYCSLTF 135
            +SE     + + R                     P  H +         ++     L +
Sbjct: 73  YVSENFSAVDPVPRHVASTVHPFVWSEAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHY 132

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECL 194
           D     I    +  K   +       + L++ Y  +  ++      G+  +LT RE E L
Sbjct: 133 DDGSAAIS---MAGKDPDLSPAARGAMQLVSIYAHSRLRTLGRPKPGRRNKLTARECEIL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKT+ EI++IL I+  TV  ++    RK     R+ A+A A+   ++
Sbjct: 190 QWAAQGKTAWEISMILCIAERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241


>gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 215

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 98/208 (47%), Gaps = 22/208 (10%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           ++++Y+  S + ++  +  QE     +V    P  +V  + + E D Y     +  RP  
Sbjct: 17  SISDYLEISGYTVISAENGQEAL--ELVDKHKPHLIVTDITMPEMDGYDLVKRIRSRPAF 74

Query: 108 LFCPVF----HTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPKGRII---LRDR 158
              PV     HT  ++       G DN Y    F++  + + +  L  + ++I   LR R
Sbjct: 75  RLLPVIFLTAHTAIQSRIRGYQLGCDN-YLPKPFELDELGVVIRALLERSQLIESELRSR 133

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           + E  ++     + F         +  LT RE + L  ++EG+++ +I   L +S  T+ 
Sbjct: 134 VSESPVVTNGATSTF-------SHEISLTEREQQVLDLLTEGRSNVKIGEKLHLSPRTIE 186

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            Y++S++RKT +  R+  + +A++N+++
Sbjct: 187 KYVSSLLRKTESNNRAELVRFALKNHLI 214


>gi|304407706|ref|ZP_07389357.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304343189|gb|EFM09032.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 242

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +  T     D    +L   +  +  G   + PK  G++I + R    L E+G +
Sbjct: 100 VFETLRKGATGYLLKDMEAEALINAIRSVMTGHSYIHPKVTGKLINQLRRMTYLDEMGAV 159

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +   A          G+D  LT RE E L  ++EGK++  I   L IS  TV N+++SI+
Sbjct: 160 SGAAAGKETGVKFVAGEDNPLTRREAEVLRLMAEGKSNKTIGEFLFISEKTVKNHVSSIL 219

Query: 226 RKTATKTRSGAIAYAVRNN 244
           +K     R+ A+ ++++  
Sbjct: 220 QKMEVDDRTQAVIHSIKFG 238


>gi|14586756|gb|AAK70350.1|AF333005_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           stabilis]
          Length = 239

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSIVSSDWPF 84
             R D   +    +       R+ A ++ +G     + + R  L   +   +I  +    
Sbjct: 3   LRRQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGI-RVPLPVSKPSVAIFDTYPDG 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA------ 138
            + R  A +  +    V          V+  +  +   P   D R   L+  VA      
Sbjct: 62  WMARYQAQNYIEIDSTVRDGALSTNMIVWPDVDRSDPGPLWQDAREFGLSVGVAQSSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINILTLQTNWLASLSHSLMSRFMVPKLSPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|192288754|ref|YP_001989359.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192282503|gb|ACE98883.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 243

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 79/218 (36%), Gaps = 20/218 (9%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              R  +L    G + +++           +  +++ WP D    + +SE     + + R
Sbjct: 28  LISRFESLIASCGFTAYIMAGLPSRNAGLPELTLANGWPRDW-FDLYVSENFSAVDPVPR 86

Query: 105 PTELFC---------------PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                                P  H +         ++     L +D     I    +  
Sbjct: 87  HGATTVYPFVWSDAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHYDDGSAAIS---MAG 143

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           K   +       + L++ Y  +  ++       +   LT RE E L W ++GKT+ EI+V
Sbjct: 144 KDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNRLTPRECEILQWAAQGKTAWEISV 203

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IL I+  TV  ++    RK     R+ A+A A+   ++
Sbjct: 204 ILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241


>gi|253575856|ref|ZP_04853190.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844650|gb|EES72664.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 242

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +  T     D    SL   +  +  G   + PK  G++I + R    L E G +
Sbjct: 100 VFETLRKGATGYLLKDMEAESLINAIRTVAEGNAFIHPKVTGKLIQQLRRMEYLSETGAI 159

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A   A          G D  LT RE E L  ++EG+++  I   L IS  TV N+++SI+
Sbjct: 160 AEDTAIREAGVKFVAGDDNPLTRREAEVLRLMAEGRSNKMIGEHLFISEKTVKNHVSSIL 219

Query: 226 RKTATKTRSGAIAYAVRNN 244
           +K     R+ A+  A++  
Sbjct: 220 QKMDVDDRTQAVINAIKFG 238


>gi|88797814|ref|ZP_01113402.1| LuxR, transcriptional regulator [Reinekea sp. MED297]
 gi|88779491|gb|EAR10678.1| LuxR, transcriptional regulator [Reinekea sp. MED297]
          Length = 240

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 92/236 (38%), Gaps = 21/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           DLL R+     T      + ++++ V   +FL            D ++  ++P +  R  
Sbjct: 2   DLLERLQQAQSTSELPEILESISQVVEFDYFLFGLALPNSITHSDILMYDNYPGEWRRVY 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPEN-------------ITPPAGMDNRYCSLTFDV 137
             S   K   ++Q     + PV                        +G+   + SL    
Sbjct: 62  DESGYAKRDPIVQYSISNYMPVTWAQISESPSYSRSDLKIMWEAEASGLKAGF-SLPIHG 120

Query: 138 ARIRIGLMLLFP-----KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGRE 190
           A    G++         + R+   + +  I +L     +  K   V   K+   +LT RE
Sbjct: 121 AVGEFGMISFASNHNTDEQRLKYAEAIPVIQMLVPAIQDAVKRLRVSESKEPPAKLTKRE 180

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +ECLTW +EGK+S EI+ ILG S  T   ++++   K     R  AI+ A+   I+
Sbjct: 181 IECLTWATEGKSSWEISQILGCSERTAIFHLSNAANKLGATNRYQAISKALLCGII 236


>gi|39933398|ref|NP_945674.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39647244|emb|CAE25765.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 243

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 79/218 (36%), Gaps = 20/218 (9%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              R  +L    G + +++           +  +++ WP D    + +SE     + + R
Sbjct: 28  LISRFESLIASCGFTAYIMAGLPSRNAGLPELTLANGWPRDW-FDLYVSENFSAVDPVPR 86

Query: 105 PTELFC---------------PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                                P  H +         ++     L +D     I    +  
Sbjct: 87  HGATTVHPFVWSDAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHYDDGSAAIS---MAG 143

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           K   +       + L++ Y  +  ++       +   LT RE E L W ++GKT+ EI+V
Sbjct: 144 KDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNRLTPRECEILQWAAQGKTAWEISV 203

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IL I+  TV  ++    RK     R+ A+A A+   ++
Sbjct: 204 ILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241


>gi|86358681|ref|YP_470573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282783|gb|ABC91846.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 241

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 93/251 (37%), Gaps = 35/251 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-V 78
            S+++    +S L A +        +   +  ++   G S+  L+     ++  L  + +
Sbjct: 1   MSYMTTSERQSLLAAELAVAGTRGLFAQGLGRVSAAFGLSYATLMHAPSPEDLLLKPLLI 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI------------------ 120
            S  P   VR    +   +      R  E   P+   L + +                  
Sbjct: 61  ESSLPAAYVRDFDRANMMRGCPFGVRLRESAVPLAWHLDDTVNGQAFPAELRALMLRHAI 120

Query: 121 -----TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                 P   +D R     F   R  +G   +     +IL         L AY A     
Sbjct: 121 PAGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIVILHT-------LDAYNAVRRNE 173

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            + H      L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+ 
Sbjct: 174 ENAHSA----LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQ 229

Query: 236 AIAYAVRNNIV 246
            +A A+R  ++
Sbjct: 230 LVAKAIRLKLI 240


>gi|328542023|ref|YP_004302132.1| transcriptional regulator, LuxR family [polymorphum gilvum
           SL003B-26A1]
 gi|326411773|gb|ADZ68836.1| Transcriptional regulator, LuxR family [Polymorphum gilvum
           SL003B-26A1]
          Length = 239

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 97/238 (40%), Gaps = 16/238 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           S L    DL  ++  L+     + R+ AL    G    +L  +          I+++ W 
Sbjct: 2   SRLTEALDLAEQIGRLETAQDVSARLGALARDYGFHAHVLASFQGPGTVAEPRILAAGWA 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIR 141
            +      +++      V+ R T    P      L E    P G+     +  F +    
Sbjct: 62  QEWQERYLVNQYAVDDPVVVRATLASMPFRWSDALNEPWVTPRGVRVFDEARAFRLCDGV 121

Query: 142 I----------GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTG 188
                      G + L  +   +  + L  + L+  Y  +  ++    D  W     LT 
Sbjct: 122 FIPVYGPKGLEGGLSLGGERVDVGAEELKALHLVGLYAYDHVRALSQGDPAWSAGT-LTP 180

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+ECL W++ GKTS EI+ +LGISR+T + Y+A  +RK     R+ A+A A R  ++
Sbjct: 181 RELECLKWVAAGKTSWEISQVLGISRHTADWYLAEAVRKLGAANRTHAVAEAFRRAMI 238


>gi|227821018|ref|YP_002824988.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227340017|gb|ACP24235.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 246

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 78/218 (35%), Gaps = 15/218 (6%)

Query: 44  SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEKDKYYNVL 102
                +  +++  G   F+++         L +  + + WP + +R    +   +   V+
Sbjct: 28  DVKRVLDQISDAFGFRGFMVLAIPDSGCHSLAAQALLTSWPMEFLRRYDSAGLIEGSPVI 87

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA-------------RIRIGLMLLFP 149
           QR      P  +                    F+ A             +     +    
Sbjct: 88  QRLRRSTIPFTYDAHLLARRRVDGKGEAAISVFEAAGMPRGLYLPVHDAKGGRAAIAFGG 147

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAV 208
              ++  D +  +   A    +       H   +   L+ RE+ECL W + GKT+ E+A 
Sbjct: 148 DREVVSSDEMQALNFWAGLLYSRLSEVRTHDRRRPGSLSRREIECLRWAAAGKTTVEMAR 207

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ +S  TVN+Y+    RK  +  R   +A A+R  ++
Sbjct: 208 IMALSEYTVNHYLNRATRKLDSVNRVQTVAKAMRAGLI 245


>gi|254473001|ref|ZP_05086399.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062]
 gi|211957722|gb|EEA92924.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062]
          Length = 239

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 90/239 (37%), Gaps = 18/239 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           + L    + +  +   +     + R+  L +  G + F L            SI+ S W 
Sbjct: 2   NPLTAALEFVESINNEETPDGVSKRIAELGQSFGFTSFCLAAIPEAGASFDGSIMLSGWR 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPPAGMDNRY-----C 131
            +  +     +  +   ++ +      P           L             Y      
Sbjct: 62  PEWQQRYLDRDYVQNDPIVAKARTASRPFLWSSVARDRNLTAAAQQVLSEARDYGMYDGV 121

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYDVHWGKDFELT 187
            +     +   G ML+F    + L +R    L  +G+ A+ +       + +  +   LT
Sbjct: 122 CVPVHGLQGYQG-MLIFGGPEVRLNEREISVLHLVGIYASNKVRELVGANTNRPRH-RLT 179

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+ECL W + GKTS EI+ IL IS++T + Y+AS  RK     R+ A+A   R  ++
Sbjct: 180 PRELECLKWSAAGKTSWEISQILNISQHTADWYLASAARKLHAANRTHAVAEGFRLGLI 238


>gi|15964581|ref|NP_384934.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309327|ref|ZP_07588990.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307320063|ref|ZP_07599484.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15073759|emb|CAC45400.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306894278|gb|EFN25043.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306900196|gb|EFN30814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 246

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 79/225 (35%), Gaps = 15/225 (6%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEK 95
             +D        +  ++E  G   F+++         L +  + + WP D +R    +  
Sbjct: 21  GAIDSEDDVRRALGRVSEGFGFRGFMVLAIPESGSHSLTAQALMTTWPMDFLRRYDSARL 80

Query: 96  DKYYNVLQRPTELFCPV---FHTLPENITPPAGMDN----------RYCSLTFDVARIRI 142
                V+QR      P     H L        G             R   L    A    
Sbjct: 81  IDGSPVIQRLRRSTIPFTYDAHLLARGRVDGKGEAAICVFEQANMPRGVYLPVHDAAGHR 140

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGK 201
             +        +  D +  + L A    +          +    L+ RE+ECL W + GK
Sbjct: 141 AAIAFGGDRSAVSDDEMQALNLWAGLLYSRLSEVRTRDRRGPGSLSRREIECLRWAAAGK 200

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ E+A I+ +S  TVN+Y+    RK  +  R   +A A+R  ++
Sbjct: 201 TTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245


>gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 229

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 20/214 (9%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           A+ +++  S + +V     QE    S++ +  P  LV  + +   + Y     V QRP  
Sbjct: 17  AVKDFLELSGYSVVTAKNGQEAL--SLLETYHPHLLVSDIKMPRTNGYELVAQVRQRPEF 74

Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV       T  E I       + Y    F++  +   +  L  + +II  +  ++ 
Sbjct: 75  RLLPVVFLTEKSTTSERIRGYQAGCDVYLPKPFEMEELGAVIRNLLERSQIIESEWRYKN 134

Query: 163 GLLAAYQANMFKSYDVHWGKDF----------ELTGREVECLTWISEGKTSDEIAVILGI 212
             +A  QA+  K        D           ELT RE + L  +++G ++ EI   L +
Sbjct: 135 RQIAQKQAHSPKIEPEEKIIDPLPPKPTVELPELTEREKQVLELLAQGLSNVEIGQKLHL 194

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  Y++S++RKT T  R+  + +A+ N++V
Sbjct: 195 SPRTVEKYVSSLLRKTETNNRAELVRFALDNDLV 228


>gi|167584437|ref|ZP_02376825.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 239

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 16/231 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           D   +    +       R+ A ++ +G     + + R  L   +   +I  +     +  
Sbjct: 7   DAYHQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGI-RVPLPVSKPAVAIFDTYPDGWMAH 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA------RIRI 142
               +  D    V          V+    +    P   D R   L   VA      R   
Sbjct: 66  YQEQNYIDIDSTVRDGALSTNLIVWPDADKAGASPLWADARASGLAVGVAQSSWAARGAF 125

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANM-------FKSYDVHWGKDFELTGREVECLT 195
           GL+ +      +    +  + L   + AN+       F    +    +  LT RE E L 
Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSGFMVPKLAPEANVVLTAREREVLC 185

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 186 WTAEGKTACEIGQILNISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|12620586|gb|AAG60862.1|AF322012_167 ID375 [Bradyrhizobium japonicum]
          Length = 261

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 92/261 (35%), Gaps = 24/261 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q +  +     +R S    L +  +   +   +         +       G         
Sbjct: 4   QSHGKMPLASSRRESRGPDLFSFIECAIQTRSIAALFDL---LVNFASNEGFDKVAYGAL 60

Query: 67  DLFQEQKLDSIVSS----DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF---HTLPEN 119
               E++L   +      ++P D  +  A  E      V++R   L  P      T    
Sbjct: 61  SCSNERRLPEYLPPPPTINFPSDWCQRYAEQEYQAIDPVVRRTAMLPRPFLWDELTSRYE 120

Query: 120 ITP----------PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA--- 166
           + P           AG+ +      F        +    P      +DR+  +  LA   
Sbjct: 121 LQPRELRVLREAKEAGLKHGMSVPLFGSQGRSAFVSFASPFDDADPQDRMAHLTTLASAF 180

Query: 167 -AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               A +    D     D  LT RE ECL W++EGK++  I  ++ ++ NTVN ++ +++
Sbjct: 181 HNAVAQITPPLDESCETDIPLTPRETECLYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVI 240

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R+ A+A A R  I+
Sbjct: 241 RKLGAANRTNAVAKATRRGII 261


>gi|14586754|gb|AAK70349.1|AF333004_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans ATCC BAA-247]
          Length = 239

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 79/244 (32%), Gaps = 34/244 (13%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSIVSSDWPF 84
             R D   +    +       R+ A ++ +G     + + R  L           S    
Sbjct: 3   LRRQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGI-RVPLP---------VSKPSV 52

Query: 85  DLVRCMALSEKDKY---------YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +           Y           V          V+  + +    P   D R   L+ 
Sbjct: 53  AIFDTYPDGWMAHYQAHNYIEIDSTVRDGALSTNMIVWPDVDQIAPCPLWQDARDFGLSV 112

Query: 136 DVA------RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGK 182
            VA      R   GL+ +      +    +  + L       L+    + F    +    
Sbjct: 113 GVAQSSWAARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAA 172

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+ 
Sbjct: 173 GVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIS 232

Query: 243 NNIV 246
             ++
Sbjct: 233 AGLI 236


>gi|221196069|ref|ZP_03569116.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2M]
 gi|221202743|ref|ZP_03575762.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2]
 gi|221176677|gb|EEE09105.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2]
 gi|221182623|gb|EEE15023.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2M]
          Length = 239

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236


>gi|27376991|ref|NP_768520.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27350133|dbj|BAC47145.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 253

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 17/183 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF---HTLPENITP----------PAGMD 127
           ++P D  +  A  E      V++R   L  P      T    + P           AG+ 
Sbjct: 71  NFPSDWCQRYAEQEYQAIDPVVRRTAMLPRPFLWDELTSRYELQPRELRVLREAKEAGLK 130

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----AYQANMFKSYDVHWGKD 183
           +      F        +    P      +DR+  +  LA       A +    D     D
Sbjct: 131 HGMSVPLFGSQGRSAFVSFASPFDDADPQDRMAHLTTLASAFHNAVAQITPPLDESCETD 190

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL W++EGK++  I  ++ ++ NTVN ++ +++RK     R+ A+A A R 
Sbjct: 191 IPLTPRETECLYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRR 250

Query: 244 NIV 246
            I+
Sbjct: 251 GII 253


>gi|311280044|ref|YP_003942275.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308749239|gb|ADO48991.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 216

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 35/184 (19%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRC------MALSEKDKYYN--VLQRPTELFCPVFHTLPEN 119
           LF  Q +DS     W F L  C      +  +    Y+N  +++ P  +   VFHT  + 
Sbjct: 58  LFDMQSIDSQAMHQWCFALQNCPKQFKVLLFNTPQHYHNRDIVEWP--MISGVFHTETDE 115

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                G+ N        V R                        ++  Y           
Sbjct: 116 EHLIDGIKN--------VCRGEKCF-----------------PKVINDYIVQQLNLSHPQ 150

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +  ELT RE E L  + +G ++ EIA +L IS NTV  +I ++ +K + K R+ A+ +
Sbjct: 151 WNECVELTRREKEILCKLRQGASNIEIAHLLFISENTVKTHIYNLFKKLSVKNRTQAVFW 210

Query: 240 AVRN 243
           A RN
Sbjct: 211 ANRN 214


>gi|161520519|ref|YP_001583946.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353291|ref|YP_001948918.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221209754|ref|ZP_03582735.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           multivorans CGD1]
 gi|160344569|gb|ABX17654.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337313|dbj|BAG46382.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221170442|gb|EEE02908.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           multivorans CGD1]
          Length = 239

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVALTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|82703532|ref|YP_413098.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411597|gb|ABB75706.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 244

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 75/233 (32%), Gaps = 18/233 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L   ++  D           +   +G  HFL          +    + S +P +  +   
Sbjct: 6   LFESLLNCDSVEELHSATTTIARAMGFEHFLYGVQVNTSLTRPYRFILSCYPEEWRKHYD 65

Query: 92  LSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMD---NRYCSLTFDVARIRI 142
                 +   +        P+      F    E        D       S +    R   
Sbjct: 66  KEGYANFDPTVSHCARTSIPIIWKKEIFKGRRETRVRNEAKDCGLVSGASFSVHGGRGEA 125

Query: 143 GLMLLFPKGRIILRDR-----LWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVEC 193
            ++ L                + +  LL  Y     +   +  G    K   LT RE EC
Sbjct: 126 AMLSLATSRESREAQNDILATMAKAQLLTCYLHEAVQRIVLSKGPLPVKKANLTEREQEC 185

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W +EGKT  EIA I+ IS  TV  ++ + ++K     R  AI+ A+   ++
Sbjct: 186 LLWAAEGKTGWEIANIVKISERTVTFHLQNAIQKLGVVNRQQAISRALSMGLI 238


>gi|14627170|gb|AAK50054.2|AF364058_1 transcriptional activator [Burkholderia multivorans ATCC 17616]
          Length = 239

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPETRVALTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|107025997|ref|YP_623508.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692818|ref|YP_838351.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737931|ref|YP_001779191.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895371|gb|ABF78535.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116650818|gb|ABK11458.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
 gi|169820119|gb|ACA94701.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 239

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|12620907|gb|AAG61133.1|AF330022_1 AHL receptor [Burkholderia vietnamiensis]
          Length = 239

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFMLPKLSPAAGVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|206563716|ref|YP_002234479.1| N-acylhomoserine lactone dependent regulatory protein CepR
           [Burkholderia cenocepacia J2315]
 gi|198039756|emb|CAR55726.1| N-acylhomoserine lactone dependent regulatory protein CepR
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|12620899|gb|AAG61129.1|AF330018_1 AHL receptor [Burkholderia cepacia ATCC 25416]
 gi|17939926|emb|CAD19536.1| CepR protein [Burkholderia cepacia]
 gi|288551614|gb|ADC53303.1| transcriptional activator [Burkholderia cepacia]
          Length = 239

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|149187186|ref|ZP_01865484.1| LuxR, transcriptional regulator [Vibrio shilonii AK1]
 gi|148838722|gb|EDL55661.1| LuxR, transcriptional regulator [Vibrio shilonii AK1]
          Length = 259

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D+   + +  + +  +              + ++  +TE +G  H+L          + +
Sbjct: 5   DKINATLIRDIGSNDEFDFE--------DLSGKLAEVTEVIGFEHYLFAVSVPVTVMRAE 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNR 129
           ++V ++ P    +    +E   +  V+        P+       + +P++        + 
Sbjct: 57  NVVLTNQPLAWRQFYEDNEVMYFDQVVLHCRNSMLPLQWRSLLANDIPDDKNVIKLASDF 116

Query: 130 YCS--LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--- 184
                +T  +      L L+    R   R    E  +L+ Y  ++   Y           
Sbjct: 117 GLGDGITIPLRANHGCLGLISFSNRKGTRKIDHESTILSTYVGSLVADYINDIRNHVCEK 176

Query: 185 -------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE  CL W++EGK+S E+A I+G S  TVN +I +   K    +R+ A+
Sbjct: 177 QFGQVKSSLTLREQICLAWVAEGKSSWEVAQIIGCSERTVNFHIQNASEKLNAFSRTQAV 236

Query: 238 AYAVRNNIV 246
           + A+    +
Sbjct: 237 SKALLTGSI 245


>gi|14586760|gb|AAK70352.1|AF333007_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           vietnamiensis]
          Length = 239

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|190890329|ref|YP_001976871.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695608|gb|ACE89693.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 234

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 8/221 (3%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92
             +        +   + A  ++    +F L R            +V ++ P   V     
Sbjct: 13  PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDVVITNVPERRVGLFIA 72

Query: 93  SEKDKYYNVLQRPTELF-CPVFHTLPENITPPAGM------DNRYCSLTFDVARIRIGLM 145
           + ++   NV  +  +    PV     E    P+           +  +       R   +
Sbjct: 73  TLREALGNVRAKSAQFLATPVHGRSAEPAAYPSDRLFNEFRSGVFLFIPLFTPEGRRYCL 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L        +  + ++ L A    +      +       LT RE E + W SEGKTS E
Sbjct: 133 VLSGVREEPDQGEIADMLLDAMRIFDKLYEEILTHEMSGRLTQREAEIVKWTSEGKTSAE 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|115358865|ref|YP_776003.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|13508495|gb|AAK27306.1| AHL receptor [Burkholderia ambifaria]
 gi|115284153|gb|ABI89669.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 239

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMLPKLSPESSVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLRWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236


>gi|144900185|emb|CAM77049.1| regulatory protein, LuxR:Autoinducer-binding [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 242

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 85/235 (36%), Gaps = 17/235 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI----VSSDWP 83
              D + R +  D   +    + +   + G  H +        E+ LD +    V  D+P
Sbjct: 7   RLGDFIERTLRADTAPALMSELKSALVHWGFPH-MACGAFGEPERPLDDMSVPAVVVDYP 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLT 134
            +  +            V+ R  + + P  +  L +   P   M             ++ 
Sbjct: 66  EEWQKYYFEKNYVTIDPVITRACQAYVPYRWDQLRDLTNPQKRMFKEATEAGLRHGITVP 125

Query: 135 FDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMF--KSYDVHWGKDFELTGREV 191
                  I +  +      I   R L    +L     ++     +         LT RE 
Sbjct: 126 VHGPNGSIFVASVASPHTDIDHLRSLSVANVLVTQVYSVLVGMRHPGAPSAPVSLTARER 185

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W + GK+S +I VIL IS NTVN ++ + M K    TR  AI  A+R  ++
Sbjct: 186 ECLIWSARGKSSWDIGVILNISDNTVNFHLKNAMGKLKASTRVLAIVKAIRMGLI 240


>gi|241203072|ref|YP_002974168.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856962|gb|ACS54629.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 234

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 84/221 (38%), Gaps = 8/221 (3%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92
             +        +   + +  ++    +F L R            +V ++     V     
Sbjct: 13  PELSRAINRTDFFRLLKSAAQHYNFDNFALARISEASAPFGERDVVITNVAERRVGLFIT 72

Query: 93  SEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYCSLTFD-----VARIRIGLM 145
           + K+    V  +  +      H       + P   + N + S  F          R   +
Sbjct: 73  TLKEALGTVRAKTAQFLATPVHGRSAQPEVYPSDLVFNEFLSGVFLFIPLFTPEGRRYCL 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L  + +   +  + +I L A    +      +       LT RE E + W SEGKTS E
Sbjct: 133 VLSGERQEPDQSEIADILLDAMRIFDKLYEEILTPEMSGRLTQRESEIVKWTSEGKTSAE 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|12620903|gb|AAG61131.1|AF330020_1 AHL receptor [Burkholderia cepacia]
          Length = 239

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|59940043|gb|AAX12560.1| LuxR-type transcriptional regulator [Aeromonas sobria]
          Length = 258

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 20/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTTVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPVSWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V+Q   +   P++          L E      G+   +      S     
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191
           A    G++      R    D L E   + ++ AN      +         +   LT RE 
Sbjct: 128 AAGETGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQHAALTDRET 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|12620901|gb|AAG61130.1|AF330019_1 AHL receptor [Burkholderia multivorans]
          Length = 239

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L   + AN+  S         +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFVVPKLSPEARVALTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|171322367|ref|ZP_02911189.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171092309|gb|EDT37680.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 239

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIAAGLI 236


>gi|159184428|ref|NP_353732.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159139741|gb|AAK86517.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 201

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 14/185 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC---- 131
             V + WP +L++        +   V+ +  +   P   ++   +     + N+      
Sbjct: 16  YTVITSWPAELLQRYDEEGMLQNSRVMAQLKKSTIPFSVSMDFLVNGEEHIANKTVIGLF 75

Query: 132 -------SLTFDVARI--RIGLMLLFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWG 181
                  S+ F V  +  R G +       ++   RL E+  ++ +  A + +   +   
Sbjct: 76  ERFEMVNSVWFPVHDVTMRRGAISFSGNKAVLPTTRLAELLYISCHVFARLSEIRRLDLR 135

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE++CL W + GKTS EIA I+ +S +T+N+Y+    +K  T  R+ A+A A+
Sbjct: 136 VPETLSEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKAL 195

Query: 242 RNNIV 246
           R  ++
Sbjct: 196 RVGLI 200


>gi|222149185|ref|YP_002550142.1| transcriptional regulator protein [Agrobacterium vitis S4]
 gi|221736170|gb|ACM37133.1| transcriptional regulator protein [Agrobacterium vitis S4]
          Length = 243

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 23/183 (12%)

Query: 68  LFQEQKLDSIVSSDWPF---DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
            FQ+  +  IVSS+  F   D  + + +S  +K+  ++ +  E F     TLP       
Sbjct: 79  AFQDPAIRHIVSSEPSFVWSDFSKTLPISRDEKW--LMDQAKEFFVSNGFTLP-----IL 131

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKD 183
            +D R   +TF                          + L+A+   A   + Y  +  + 
Sbjct: 132 SLDGRRAGVTFA------------GSDIDDSPQARTGMALIASLVFARALELYGANQKQT 179

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E + WI+ GKT  EI+VI G+S   V  ++ +IM K    +RS AIA A R 
Sbjct: 180 TRLTPREREVIGWIANGKTDWEISVIFGVSEKAVTKHVGNIMMKLGAVSRSHAIAEAFRQ 239

Query: 244 NIV 246
            ++
Sbjct: 240 KLI 242


>gi|258510158|ref|YP_003183592.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476884|gb|ACV57203.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 506

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDV--ARIRIGLM 145
           M + + D+    L +  ++  PVF     NI P + ++  + S  L   V   R  +G+M
Sbjct: 337 MRIRQTDRDIPSLTQFVQIAKPVFLKDVGNILPQSYVNKFHLSSLLVCPVIDNRRMLGIM 396

Query: 146 LLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWI 197
           LL   GR    D    R+ E  L  A +  + + Y             LT RE E L  I
Sbjct: 397 LLDHGGRPFTPDNATIRMVEAMLARAGRMIVMQMYRQAGAAPITPLTTLTKREREILQLI 456

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  + EI   L IS  TV  +++SI+RK   K R+ A+A A+R  I+
Sbjct: 457 ADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMRERII 505


>gi|310644345|ref|YP_003949104.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309249296|gb|ADO58863.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 240

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +        D    SL   +  +  G   + PK  G++I + R    L E G +
Sbjct: 99  VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAM 158

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A              G++  LT RE E L  ++EGK++  I   L IS  TV N+++SI+
Sbjct: 159 AEGHTKE-AGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217

Query: 226 RKTATKTRSGAIAYAVRNN 244
           +K     R+ A+  +++  
Sbjct: 218 QKMEVDDRTQAVINSIKYG 236


>gi|308071115|ref|YP_003872720.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305860394|gb|ADM72182.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa
           E681]
          Length = 240

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +        D    SL   +  +  G   + PK  G++I + R    L E G +
Sbjct: 99  VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAM 158

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A              G++  LT RE E L  ++EGK++  I   L IS  TV N+++SI+
Sbjct: 159 AEGHTKE-AGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217

Query: 226 RKTATKTRSGAIAYAVRNN 244
           +K     R+ A+  +++  
Sbjct: 218 QKMEVDDRTQAVINSIKYG 236


>gi|78061902|ref|YP_371810.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969787|gb|ABB11166.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 239

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L   + AN+  S         +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFVVPKLAPAAGVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|66277280|gb|AAY44571.1| LuxR-like protein [Aeromonas caviae]
          Length = 258

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V+Q   +   P++          L E      G+   +      S     
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191
           A    G++      R    D L E   + ++ AN      +         +   LT RE 
Sbjct: 128 APGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|218461489|ref|ZP_03501580.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 81/221 (36%), Gaps = 8/221 (3%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92
             +        +   + A  ++    +F L R            +V +  P   V     
Sbjct: 13  PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDVVITSVPERRVGLFIA 72

Query: 93  SEKDKYYNVLQRPTELFCPVFH-------TLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           + K+    V  +  +      H       T P +          +  +       R   +
Sbjct: 73  TLKETLGTVRAKSAQFLATPVHGRSAEPDTYPSDRLFNEFRSGVFLFIPLFTPEGRRYCL 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L  +     +  + ++ L A    +      +       LT RE E + W SEGKTS E
Sbjct: 133 VLSGEREEPDQGEIADLLLDAMRIFDKLYEEILTQEMSGRLTQRESEIVKWTSEGKTSAE 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|254254249|ref|ZP_04947566.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa
           AUO158]
 gi|12620909|gb|AAG61134.1|AF330023_1 AHL receptor [Burkholderia cepacia]
 gi|124898894|gb|EAY70737.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa
           AUO158]
          Length = 239

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +  +   +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARRADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEASVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|83716915|ref|YP_439706.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|167578146|ref|ZP_02371020.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167616276|ref|ZP_02384911.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257142845|ref|ZP_05591107.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650740|gb|ABC34804.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 239

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            +R   GL+ +      +    +  + L A + ANM  S         +       LT R
Sbjct: 120 ASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|88812489|ref|ZP_01127738.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis
           Nb-231]
 gi|88790275|gb|EAR21393.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis
           Nb-231]
          Length = 249

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 80/223 (35%), Gaps = 20/223 (8%)

Query: 44  SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
                  AL E  G  HF+          K   +V S  P                  +Q
Sbjct: 22  GVQRLCAALGEAYGFDHFIYGASFPTSLIKPAVLVISGHPEAWRDHYQACGYLAVDPAVQ 81

Query: 104 RPTELFCPV----FHTLPENITPPAGMDNRY--------CSLTFDVARIRIGLMLLFPKG 151
             T    P+        P+    P  +             SL+   +R  +G++    + 
Sbjct: 82  HCTRSIRPLIWQDLMLDPKIDEKPFTVMQEAREFGLVSGVSLSIRGSRGELGVLSFSSER 141

Query: 152 -----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTS 203
                R  +   + ++ LL+AY               F   ELT RE ECL W +EGKTS
Sbjct: 142 TAQQTRSEIDSAIPDLYLLSAYVHEAVGRLVTQGSLPFNRPELTAREHECLLWAAEGKTS 201

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA ILGIS  T   ++ +  R+    +R  A+A AV   ++
Sbjct: 202 WEIARILGISERTAIFHLQNAARRLNASSRQQAVARAVSQGLI 244


>gi|59940119|gb|AAX12598.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 258

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V+Q   +   P++          L E      G+   +      S     
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191
           A    G++      R    D L E   + ++ AN      +         +   LT RE 
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|66277284|gb|AAY44573.1| LuxR-like protein [Aeromonas veronii bv. sobria]
          Length = 258

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V+Q   +   P++          L E      G+   +      S     
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191
           A    G++      R    D L E   + ++ AN      +         +   LT RE 
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|172063602|ref|YP_001811253.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996119|gb|ACB67037.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 239

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236


>gi|53717160|ref|YP_105961.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           mallei ATCC 23344]
 gi|53721911|ref|YP_110896.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|67643283|ref|ZP_00442030.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei GB8 horse 4]
 gi|76818142|ref|YP_337635.1| BpsR [Burkholderia pseudomallei 1710b]
 gi|121598108|ref|YP_989940.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei SAVP1]
 gi|124382764|ref|YP_001024423.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10229]
 gi|126442328|ref|YP_001062292.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 668]
 gi|126445689|ref|YP_001078154.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10247]
 gi|126458533|ref|YP_001075258.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106a]
 gi|134278985|ref|ZP_01765698.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 305]
 gi|167000171|ref|ZP_02265991.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei PRL-20]
 gi|167723232|ref|ZP_02406468.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei DM98]
 gi|167742204|ref|ZP_02414978.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 14]
 gi|167819378|ref|ZP_02451058.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 91]
 gi|167827752|ref|ZP_02459223.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 9]
 gi|167849226|ref|ZP_02474734.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei B7210]
 gi|167906168|ref|ZP_02493373.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914491|ref|ZP_02501582.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 112]
 gi|167922390|ref|ZP_02509481.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei BCC215]
 gi|217418339|ref|ZP_03449846.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 576]
 gi|226197543|ref|ZP_03793118.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507418|ref|ZP_04520133.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei MSHR346]
 gi|242313785|ref|ZP_04812802.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106b]
 gi|254174155|ref|ZP_04880817.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei ATCC 10399]
 gi|254183341|ref|ZP_04889933.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1655]
 gi|254193094|ref|ZP_04899529.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei S13]
 gi|254200806|ref|ZP_04907171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei FMH]
 gi|254204776|ref|ZP_04911129.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei JHU]
 gi|254263057|ref|ZP_04953922.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1710a]
 gi|254300240|ref|ZP_04967686.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 406e]
 gi|254357025|ref|ZP_04973300.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei 2002721280]
 gi|37223137|gb|AAQ90167.1| transcriptional activator [Burkholderia pseudomallei]
 gi|40646736|gb|AAR88244.1| BpsR [Burkholderia pseudomallei]
 gi|43469096|gb|AAS46624.1| BpsR [Burkholderia pseudomallei]
 gi|52212325|emb|CAH38349.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|52423130|gb|AAU46700.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           mallei ATCC 23344]
 gi|76582615|gb|ABA52089.1| BpsR [Burkholderia pseudomallei 1710b]
 gi|121225906|gb|ABM49437.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei SAVP1]
 gi|124290784|gb|ABN00054.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10229]
 gi|126221819|gb|ABN85324.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 668]
 gi|126232301|gb|ABN95714.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106a]
 gi|126238543|gb|ABO01655.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10247]
 gi|134249404|gb|EBA49485.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 305]
 gi|147748418|gb|EDK55493.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei FMH]
 gi|147754362|gb|EDK61426.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei JHU]
 gi|148026052|gb|EDK84175.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei 2002721280]
 gi|157809975|gb|EDO87145.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 406e]
 gi|160695201|gb|EDP85171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei ATCC 10399]
 gi|169649848|gb|EDS82541.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei S13]
 gi|184213874|gb|EDU10917.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1655]
 gi|217397643|gb|EEC37658.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 576]
 gi|225930152|gb|EEH26164.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999623|gb|EEP49047.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei MSHR346]
 gi|238524594|gb|EEP88026.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei GB8 horse 4]
 gi|242137024|gb|EES23427.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106b]
 gi|243063823|gb|EES46009.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei PRL-20]
 gi|254214059|gb|EET03444.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1710a]
          Length = 239

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            +R   GL+ +      +    +  + L A + ANM  S         +       LT R
Sbjct: 120 ASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|66736599|gb|AAY54303.1| quorum sensing trancriptional regulator [Aeromonas veronii]
          Length = 258

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V+Q   +   P++          L E      G+   +      S     
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191
           A    G++      R    D L E   + ++ AN      +         +   LT RE 
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|116250449|ref|YP_766287.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255097|emb|CAK06171.1| putative GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 234

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 8/221 (3%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92
             +        +   + +  ++    +F L R            IV ++     V     
Sbjct: 13  PELSRAINRTDFFRLLKSAAQHYNFDNFALARISEASAPFGERDIVITNVAERRVGLFIT 72

Query: 93  SEKDKYYNVLQRPTELFCPVFHT-------LPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           + K+    V  +  +      H         P ++     +   +  +       R   +
Sbjct: 73  TLKEALGTVRAKTAQFLATPVHGRSAQPEDYPSDLVFNEFLSGVFLFIPLFTPEGRRYCL 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L  + +   +  + ++ L A    +      +       LT RE E + W SEGKTS E
Sbjct: 133 VLCGERQEPDQSEIADMLLDAMRIFDKLYEEILTPEMSGRLTQRESEIVKWTSEGKTSAE 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|167897824|ref|ZP_02485226.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 7894]
          Length = 239

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            +R   GL+ +      +    +  + L A + ANM  S         +       LT R
Sbjct: 120 ASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|170700319|ref|ZP_02891331.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134753|gb|EDT03069.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 239

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236


>gi|218515768|ref|ZP_03512608.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 234

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 8/221 (3%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92
             +        +   + A  ++    +F L R            +V ++ P   V     
Sbjct: 13  PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDVVITNVPERRVGLFIA 72

Query: 93  SEKDKYYNVLQRPTELF-CPVFHTLPENITPPAGM------DNRYCSLTFDVARIRIGLM 145
           + ++   NV  +  +    PV     E    P+           +  +       R   +
Sbjct: 73  TLREALGNVRAKSAQFLATPVHGRSAEPAAYPSDRLFNEFRSGVFLFIPLFTPEGRRYCL 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L        +  + ++ L A    +      +       LT RE + + W SEGKTS E
Sbjct: 133 VLSGVREEPDQGEIADMLLDAMRIFDKLYEEILTHEMSGRLTQREADIVKWTSEGKTSAE 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|59940065|gb|AAX12571.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 258

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V+Q   +   P++          L E      G+   +      S     
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191
           A    G++      R    D L E   + ++ AN      +         +   LT RE 
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|4103042|gb|AAD12726.1| transcriptional activator [Burkholderia cepacia]
          Length = 239

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 DREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|66277258|gb|AAY44560.1| LuxR-like protein [Aeromonas veronii]
          Length = 258

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V+Q   +   P++          L E      G+   +      S     
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191
           A    G++      R    D L E   + ++ AN      +         +   LT RE 
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|66277260|gb|AAY44561.1| LuxR-like protein [Aeromonas veronii]
          Length = 258

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V+Q   +   P++          L E      G+   +      S     
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191
           A    G++      R    D L E   + ++ AN      +         +   LT RE 
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|59940029|gb|AAX12553.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 261

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 88/237 (37%), Gaps = 21/237 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRRKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++L F        D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGIILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 187

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 244


>gi|86747544|ref|YP_484040.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570572|gb|ABD05129.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           HaA2]
          Length = 242

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 17/217 (7%)

Query: 44  SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
           S   +  +     G S +++           +  +++ WP                 V +
Sbjct: 27  SLVRQFESHIASAGFSAYIMAALPAPGAGLAELTLANGWPRGWFELYVGRNYMAVDPVPR 86

Query: 104 RPTELFCPV--------------FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                  P                H +  +      +      L +D       ++ +  
Sbjct: 87  HGAATVQPFEWSDAPYDRKRDRAAHQVMTDAAEFGLVRGYCIPLHYDDG---GAMISMAG 143

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +   +       + L+  Y  N  +S +    +   LT RE E L+W ++GKT+ EI++I
Sbjct: 144 EAPDLDPTAKGAMQLIGVYAHNRLRSLNRPKPQRRLLTSRECEILSWAAQGKTAWEISMI 203

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+  TV  ++    RK     R+ A+A A+   ++
Sbjct: 204 LRIAERTVKFHLIEASRKLNAVNRTAAVAKALSLGLI 240


>gi|306021776|gb|ADM80305.1| LuxR [Aeromonas sobria]
          Length = 237

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 29/231 (12%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+  L    +  M      +Y G +  L++       Q+   ++ +  P   V+    + 
Sbjct: 3   RLAGLIGRFTVDMGY----DYYGFT--LII---PMSMQRPKVVLFNQCPISWVQTYTDNN 53

Query: 95  KDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDVARIR 141
                 V+Q   +   P++          L E      G+   +      S     A   
Sbjct: 54  MLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGE 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREVECLT 195
            G++      R    D L E   + ++ AN      +         +   LT RE ECL 
Sbjct: 114 NGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLF 172

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 173 WASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 223


>gi|330831695|ref|YP_004394647.1| LuxR family transcriptional regulator [Aeromonas veronii B565]
 gi|328806831|gb|AEB52030.1| Transcriptional regulator, LuxR family [Aeromonas veronii B565]
          Length = 258

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 20/234 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + +      T      +   +  +G  +F L+       QK    + ++ P       + 
Sbjct: 10  IDKFTKATKTSDIQQLLERFSHQMGFDYFRLLIIFPISMQKSHVALFNNCPTTWFDAYSE 69

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR-------------YCSLTFDVAR 139
           ++      V+    +   P+F    +  +P     +R               S      +
Sbjct: 70  NQYLTQDPVVYLGLKQTQPIFWNKLDCDSPWLPSASRDVMNLAADFGVRNGVSFPLHTPQ 129

Query: 140 IRIGLMLLFPKGRI---ILRDRLWEIGLLAAY----QANMFKSYDVHWGKDFELTGREVE 192
              G++    K +    ++ + +  +   A+Y       + KS         EL+ RE E
Sbjct: 130 GEHGILSFITKDKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDMMKYLTELSDREKE 189

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W SEGKTS EIA ILGIS  TVN ++  +  KT +K RS AIA  + + I+
Sbjct: 190 CLFWASEGKTSWEIATILGISERTVNFHLTQVTNKTDSKNRSQAIAKGITSGII 243


>gi|218291050|ref|ZP_03495082.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218239004|gb|EED06210.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 506

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDV--ARIRIGLM 145
           M + + D+    L +  ++  PVF     NI P   ++  + S  L   V   R  +G+M
Sbjct: 337 MRIRQTDRDIPSLTQFVQIAKPVFLKDVGNILPQPYVNKFHLSSLLVCPVIDQRRLLGIM 396

Query: 146 LLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWI 197
           LL   GR    D    R+ E  L  A +  + + Y             LT RE E L  I
Sbjct: 397 LLDHGGRPFTPDNAAIRMVEAMLARAGRMIVMQMYRQAGAAPITPLTTLTKREREILQLI 456

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  + EI   L IS  TV  +++SI+RK   K R+ A+A A+R  I+
Sbjct: 457 ADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMRERII 505


>gi|190892823|ref|YP_001979365.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190698102|gb|ACE92187.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
 gi|327189482|gb|EGE56638.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 241

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 91/251 (36%), Gaps = 35/251 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-V 78
            S+++    +S L A +        +   +  +    G +H  L+     ++  L  + +
Sbjct: 1   MSYMTTSERQSLLSAELAVAGTRGLFAQALGRVATAFGLAHATLMHAPSPEDLLLKPLLI 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF----------------------HTL 116
            S  P   VR    +   +      R  E   P+                       H +
Sbjct: 61  ESSLPAAYVRDFDRANMMRGCPFGLRLRESAVPLAWHLNDVVNGQAFPAELRALMLHHAI 120

Query: 117 PENI-TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           P  +  P   +D R     F   R  +G   +     IIL         L AY       
Sbjct: 121 PAGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIIILH-------ALDAYNTVRRNE 173

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              H      L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+ 
Sbjct: 174 ESAHNA----LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQ 229

Query: 236 AIAYAVRNNIV 246
            +A A+R  ++
Sbjct: 230 LVAKAIRLKLI 240


>gi|120612451|ref|YP_972129.1| LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120590915|gb|ABM34355.1| transcriptional regulator, LuxR family [Acidovorax citrulli
           AAC00-1]
 gi|227167429|gb|ACP19743.1| LuxR-like protein [Acidovorax citrulli]
          Length = 242

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 80/236 (33%), Gaps = 19/236 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-----IVSSDWPF 84
            D + R                    +G  HF L    L Q+    S     ++S ++P 
Sbjct: 4   RDFIQRANQALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPS 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCP-----------VFHTLPENITPPAGMDNRYCSL 133
             V             V +   +   P               + +  T     D     +
Sbjct: 64  RWVSHYIARNYYLEDPVRRHAPQAMSPYRWKDVSAQGDREAHIMDEATDAGLADGLGLPI 123

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA---NMFKSYDVHWGKDFELTGRE 190
                RI +  +    +  +     +    L+ A+ A     F +         +LT RE
Sbjct: 124 HEPGGRIFLATVASHQQLTLGNDACVRTYALVTAFHALYTMRFATEQTQIPTAVKLTSRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECLTW++ GK+S EI  I+ IS +TVN ++ + M K  T +R  A   A    ++
Sbjct: 184 AECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLI 239


>gi|167572684|ref|ZP_02365558.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 239

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGREV 191
           R   GL+ +      +    + ++ L A + ANM  S         +       LT RE 
Sbjct: 122 RGVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|59940037|gb|AAX12557.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         M   T  +G   +          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTMVTDESRLAEVMSRFTVGIGYDDYRFAVILPTSMQRRKEVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
            ++       ++Q       P++          L E      G+   +      S     
Sbjct: 68  TVNNMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGRE 190
           A    G++    + R      L    +L+            + +           LT RE
Sbjct: 128 ATGESGILSFITRERASSDLLLESSPILSWMSNYIFEAAIRIVRQSMREEDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|261409652|ref|YP_003245893.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329928696|ref|ZP_08282545.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
 gi|261286115|gb|ACX68086.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328937477|gb|EGG33895.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
          Length = 240

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 7/139 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +        D    SL   +  +  G   + PK  G++I + R    + E G +
Sbjct: 99  VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIHQLRRMTYVNEAGAM 158

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A    +         G++  LT RE E L  ++EGK++  I   L IS  TV N+++SI+
Sbjct: 159 AES-GSREAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217

Query: 226 RKTATKTRSGAIAYAVRNN 244
           +K     R+ A+  +++  
Sbjct: 218 QKMEVDDRTQAVINSIKYG 236


>gi|12620905|gb|AAG61132.1|AF330021_1 AHL receptor [Burkholderia stabilis]
          Length = 239

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 16/231 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           D   +    +       R+ A ++ +G     + + R  L   +   +I  +     + R
Sbjct: 7   DAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGI-RVPLPVSKPSVAIFDTYPDGWMAR 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA------RIRI 142
             A +  +    V          V+  +  +   P   D R   L+  VA      R   
Sbjct: 66  YQAQNYIEIDSTVRDGALSTNMIVWPDVDRSDPGPLWQDAREFGLSVGVAQSSWAARGAF 125

Query: 143 GLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           GL+ +      +    +  + L       L+    + F    +       LT RE E L 
Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAREREVLC 185

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 186 WTAEGKTACEIGQILSISGRTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|332981237|ref|YP_004462678.1| LuxR family two component transcriptional regulator [Mahella
           australiensis 50-1 BON]
 gi|332698915|gb|AEE95856.1| two component transcriptional regulator, LuxR family [Mahella
           australiensis 50-1 BON]
          Length = 217

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +V ++   +   +     +  +      +L   QA+    ++V    D +LT 
Sbjct: 102 GYILKDAEVDQLVEAIHKAYRGQLYVQTE--MANPVLKEDQASPLYGFNVGIRYDDDLTQ 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E L  +++G ++ EIA  L IS  TV N+++SI RK     R+ A  YA+++ 
Sbjct: 160 REREVLALVAKGLSNGEIAKKLFISEKTVKNHLSSIFRKLNVSDRTQAAVYAIKHG 215


>gi|167565578|ref|ZP_02358494.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
          Length = 239

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGREV 191
           R   GL+ +      +    + ++ L A + ANM  S         +       LT RE 
Sbjct: 122 RGVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|134293938|ref|YP_001117674.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137095|gb|ABO58209.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 239

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 120 AARGAFGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFMLPKLSPAAGVTLTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K A   +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLAATNKVQAVVKAIAAGLI 236


>gi|86356279|ref|YP_468171.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280381|gb|ABC89444.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 234

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 8/221 (3%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92
             +        +   + A  ++    +F L R            IV ++     V     
Sbjct: 13  PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDIVITNVAERRVGLFIA 72

Query: 93  SEKDKYYNVLQRPTELFCPVFH-------TLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           + ++       +  +      H       T P ++         +  +       R   +
Sbjct: 73  TLREALGTTRAKSAQFLATPVHGRSAQSDTYPSDLLFNEFRSGVFLFIPLFTPEGRRYCL 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L  +     +  + ++ L A    +      +       LT RE E + W SEGKTS E
Sbjct: 133 VLSGEREEPDQGEIADMLLDAMRIFDKLYEEILTPEMSGRLTQRESEIVKWTSEGKTSAE 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|145301148|ref|YP_001143989.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853920|gb|ABO92241.1| transcriptional regulator, LuxR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 260

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 20/234 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R      T     ++   +  +G  +F L+       QK    + ++ P       + 
Sbjct: 12  IDRFTKAKKTSEIQQQLERFSHQMGFDYFRLLIIFPISMQKSHVALFNNCPTSWFEAYSE 71

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR-------------YCSLTFDVAR 139
                   V+    +   P+F    +  +P     +R               S      +
Sbjct: 72  RHYLTQDPVVFLGLKQTQPIFWNKLDCDSPWLPSASREVMNLAADFGVRNGVSFPLHTPQ 131

Query: 140 IRIGLMLLFPKGRI---ILRDRLWEIGLLAAY----QANMFKSYDVHWGKDFELTGREVE 192
              G++    K +    ++ + +  +   A+Y       + KS         EL+ RE E
Sbjct: 132 GEHGILSFISKEKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDLMKHLTELSDREKE 191

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W SEGKTS EIA ILGIS  TVN ++  +  KT +K R+ AIA ++ + I+
Sbjct: 192 CLFWASEGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGII 245


>gi|117618881|ref|YP_855090.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560288|gb|ABK37236.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 261

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 87/237 (36%), Gaps = 21/237 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++L F        D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGIILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 187

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 244


>gi|212640416|ref|YP_002316936.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561896|gb|ACJ34951.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 260

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 97/247 (39%), Gaps = 28/247 (11%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D+  +  VS     + +  R++ +D    +   +  + ++     F +V      ++ L 
Sbjct: 19  DDAHSDSVSEKERGTTMKTRIVLIDDHKLFREGIKRILDF--EQDFEVVAEGSDGDEAL- 75

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-----------------VFHTLPE 118
           ++V    P  ++  + +     + N ++   +L                    V H L  
Sbjct: 76  ALVERYKPDVVIMDINMP----HVNGVEATRQLIEAYPDTKVIILSIHDDESYVMHALQT 131

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                   +    +L   V  +  G   L PK   +  + + E   L A +    +  + 
Sbjct: 132 GAMGYLLKEMDADALIEAVRVVAEGGSYLHPK---VTHNLVKEYRRLVAGEGGGKEKQNQ 188

Query: 179 HWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              + + L T RE E L  +++GK++  IA  L IS  TV N++++I++K     R+ A+
Sbjct: 189 DVCRPYHLLTRRECEVLQLLADGKSNKGIADALYISEKTVKNHVSNILQKLNVNDRTQAV 248

Query: 238 AYAVRNN 244
             A++N 
Sbjct: 249 VVAIKNG 255


>gi|59940107|gb|AAX12592.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
          Length = 258

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 20/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRCAGLIGRFTLDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V+Q   +   P++          L E      G+   +      S     
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH------WGKDFELTGREV 191
           A    G++      R    D L E   + ++ AN      +         +   LT RE 
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRET 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 187 ECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|167464395|ref|ZP_02329484.1| Two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 241

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL-AAYQA 170
           VF TL +  +     D    SL   +  +  G   + PK    L ++L  +  L     A
Sbjct: 100 VFETLRKGASGYLLKDMEAESLINAIRSVVAGHAYIHPKVTGKLINQLRRMTYLDHTGVA 159

Query: 171 NMFKSYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
               ++D            LT RE E L  ++EG+++  I   L IS  TV N+++SI++
Sbjct: 160 GGNPAHDSALRYIDSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQ 219

Query: 227 KTATKTRSGAIAYAVRNN 244
           K     R+ A+  A++N 
Sbjct: 220 KMEVDDRTQAVIIAIKNG 237


>gi|116253270|ref|YP_769108.1| LuxR/GerE family transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257918|emb|CAK09016.1| putative LuxR/GerE family transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 238

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 35/243 (14%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDL 86
            +S L A +        +   +  ++   G SH  L+     ++  L  + + S  P   
Sbjct: 6   RQSLLSAELSTARTRSLFAQALGRISTAFGLSHATLMHAPSPEDLLLKPLLIESSLPAAY 65

Query: 87  VRCMALSEK---------------------DKYYNVLQRPTELFCPVF-HTLPENI-TPP 123
           VR    +                       +   N    P EL   +  H +P  +  P 
Sbjct: 66  VRDFDRAHMMRGCPFGVRLRASAVPPAWHLNDASNGQAFPAELRALMLRHAIPAGVAMPT 125

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              D +     F   R  +G   +     IIL          A    N  K  +      
Sbjct: 126 TAADGQRLVFWFCGERAALGQSEINELVMIILH---------ALDAYNAVKRNE--ECAH 174

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R 
Sbjct: 175 NALSNRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRL 234

Query: 244 NIV 246
            ++
Sbjct: 235 KLI 237


>gi|45453489|gb|AAS65458.1| quorum sensing transcriptional activator [Burkholderia
           thailandensis]
          Length = 239

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            +R   GL+ +      +    +  + L A + ANM  S         +       LT R
Sbjct: 120 ASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVNAIAMGLI 236


>gi|218663535|ref|ZP_03519465.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 240

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 24/241 (9%)

Query: 27  PTRSDLLARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSD 81
               D   R+  +             M  LT+ +G + FL++     +  ++ +  + ++
Sbjct: 1   MKLEDEFNRIEEVAAGFKTHYEVFKYMKGLTQDLGMTAFLIMTLPTVEFVEIGATKIITN 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-------------- 127
           WP ++V             V++R      P F+   E I    G                
Sbjct: 61  WPAEMVDYYDAHNLMVDSPVIRRMLRSTSP-FNYDVEAINTDRGGGKKSTVIDLFRRYGM 119

Query: 128 NRYCSLTFDVARIRIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
            +        A    G M +       +I   ++  I  L   + +     + H  K   
Sbjct: 120 EKGAYFPLHDAAGGRGAMSISGSRNFSMIEMAKILFIATLIYDRLSQLTLNEKH--KPIA 177

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T  E++CL   + G+ S EIA +L +S N VNN+I S+++K    TR+ A+  A+R NI
Sbjct: 178 FTSSELDCLRLTAGGRKSSEIAKLLHLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNI 237

Query: 246 V 246
           +
Sbjct: 238 I 238


>gi|66277262|gb|AAY44562.1| LuxR-like protein [Aeromonas sp. SF6-7]
          Length = 260

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 81/236 (34%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V+    +   P++          LPE      G+   +      S     
Sbjct: 68  TDNHMLACDPVIPLARKQTLPIYWNRLDERARFLPEGTMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGRE 190
           A    G++      R      L    +L+            M +   +       LT RE
Sbjct: 128 ATGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDSDPKDPLTERE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V    V
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSTGHV 243


>gi|14586749|gb|AAK70347.1|AF333002_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           cepacia]
          Length = 239

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +        T R
Sbjct: 120 AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVTQTAR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236


>gi|330828294|ref|YP_004391246.1| LuxR-like protein [Aeromonas veronii B565]
 gi|328803430|gb|AEB48629.1| LuxR-like protein [Aeromonas veronii B565]
          Length = 268

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 86/245 (35%), Gaps = 27/245 (11%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV----GASHFLLVRWDLFQEQKLDSIVSSDW 82
             R  LL  +           R+  L        G  ++          Q+   ++ +  
Sbjct: 9   MNRDQLLEYLEHFTSVTD-GNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQC 67

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY---- 130
           P   V+    +       V++   +   P++          L E      G+   +    
Sbjct: 68  PDSWVQAYTENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRN 127

Query: 131 -CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----- 184
             S     A    G++      R    D L E   + ++ +N      +   +       
Sbjct: 128 GISFPLHGAAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSA 186

Query: 185 ---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V
Sbjct: 187 GKDPLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGV 246

Query: 242 RNNIV 246
              ++
Sbjct: 247 STGLL 251


>gi|209547895|ref|YP_002279812.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533651|gb|ACI53586.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 234

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 8/221 (3%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92
             +        +   + +  ++    +F L R            IV ++     V     
Sbjct: 13  PELSRAINRTDFFRLLKSAAQHYNFDNFALARISETSAPFGERDIVITNVAERRVGLFIT 72

Query: 93  SEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYCSLTFD-----VARIRIGLM 145
           + K+    V  +  +      H   +         + N + S  F          R   +
Sbjct: 73  TLKEALGTVRAKSAQFLATPVHGRSVRPEDYRSDLVFNEFLSGVFLFIPLFTPEGRRYCL 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L  + +   +  + ++ L A    +      +       LT RE E + W SEGKTS E
Sbjct: 133 VLSGERQEPDQSEIADMLLDAMRIFDKLYEEILTQEMSGRLTQREQEIVKWTSEGKTSAE 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|315649841|ref|ZP_07902924.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315274815|gb|EFU38196.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 240

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR----LWEIGLL 165
           VF TL +        D    SL   +  +  G   + PK  G++I + R    + E G +
Sbjct: 99  VFETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYVNEAGAM 158

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A              G++  LT RE E L  ++EGK++  I   L IS  TV N+++SI+
Sbjct: 159 AES-GTREAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSIL 217

Query: 226 RKTATKTRSGAIAYAVRNN 244
           +K     R+ A+  +++  
Sbjct: 218 QKMEVDDRTQAVINSIKYG 236


>gi|330941017|gb|EGH43939.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 262

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 21/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ-EQKLDSIVSSDWPFDLVRC 89
              + +        W   +  +   +G +H+L+    +        + V + +P   + C
Sbjct: 3   QAFSELAREHNPCDWERHLRKVMRQLGFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDC 62

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY------------CSLTFDV 137
                      +L+   +   P+F    +      G    +             S+    
Sbjct: 63  YCCDGLLDIDPILKHCRQELVPMFWA--QQGRRARGRTRHFWQRREEHGLCHGLSIPLRY 120

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAY-QANMFKSYDVHWGKDFELTGREV 191
            R+R  L + F    +   D           +L  Y  + + + +      + +LT RE+
Sbjct: 121 ERLRGTLSVAFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPREL 180

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W S GKTS EI+ IL  S  TV+ ++ +  RK  + +R  A+  A    ++
Sbjct: 181 ECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 235


>gi|306850701|gb|ADN06870.1| transcriptional activator PhzR [Pseudomonas sp. CMR12a]
          Length = 241

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 16/200 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA------LSEKDKYYNVLQRPTELFCPVFH 114
           +       F   K    + S++P   V+         +    K+  +   P      +F 
Sbjct: 44  YGTCSVTPFMRPKTS--IYSNYPEPWVQRYQAQNYALIDPTVKHSKLSSAPILWGNELFR 101

Query: 115 TLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLA 166
             P+  +     +  +  +     A+ R+GL+ L  + + I  +    +        + A
Sbjct: 102 ECPQLWSEARDSNLCHGLAQPSFNAQGRVGLLSLARRNKAISAEEFEALKPVTKAFAMAA 161

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             + +  ++ D       E +GRE + L W ++GKTS+EI VI+G+  +TVN +  +I R
Sbjct: 162 HEKLSELENDDSSLNVQVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQR 221

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K     R  A++YAV    +
Sbjct: 222 KIGASNRVQAVSYAVALGYI 241


>gi|59940069|gb|AAX12573.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGNRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V++   +   P++          L E      G+   +      S     
Sbjct: 68  TENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTER 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   ++
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243


>gi|289628275|ref|ZP_06461229.1| putative LuxR-family regulatory protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 262

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 21/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ-EQKLDSIVSSDWPFDLVRC 89
              + +        W   +  +   +G +H+L+    +        + V + +P   + C
Sbjct: 3   QAFSELAREHNPCDWERHLRKVMRQLGFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDC 62

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY------------CSLTFDV 137
                      +L+   +   P+F    +      G    +             S+    
Sbjct: 63  YCCDGLLDIDPILKHCRQELVPMFWA--QQGRRARGRTRHFWQRREEHGLCHGLSIPLRY 120

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAY-QANMFKSYDVHWGKDFELTGREV 191
            R+R  L + F    +   D           +L  Y  + + + +      + +LT RE+
Sbjct: 121 ERLRGTLSVAFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPREL 180

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W S GKTS EI+ IL  S  TV+ ++ +  RK  + +R  A+  A    ++
Sbjct: 181 ECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 235


>gi|322382401|ref|ZP_08056304.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153618|gb|EFX45997.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 230

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL-AAYQA 170
           VF TL +  +     D    SL   +  +  G   + PK    L ++L  +  L     A
Sbjct: 89  VFETLRKGASGYLLKDMEAESLINAIRSVVAGHAYIHPKVTGKLINQLRRMTYLDHTGVA 148

Query: 171 NMFKSYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
               ++D            LT RE E L  ++EG+++  I   L IS  TV N+++SI++
Sbjct: 149 GGNPAHDSALRYIDSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQ 208

Query: 227 KTATKTRSGAIAYAVRNN 244
           K     R+ A+  A++N 
Sbjct: 209 KMEVDDRTQAVIIAIKNG 226


>gi|66277256|gb|AAY44559.1| LuxR-like protein [Aeromonas caviae]
          Length = 260

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 84/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTMVTDESRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
            L+       ++Q       P++          L E      G+   +      S     
Sbjct: 68  TLNNMLACDPIIQLARRQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGRE 190
           A    G++    + R      L    +L+            + +           LT RE
Sbjct: 128 AAGENGILSFITRERASSDLMLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEPLTERE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|330870194|gb|EGH04903.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 280

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 21/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ-EQKLDSIVSSDWPFDLVRC 89
              + +        W   +  +   +G +H+L+    +        + V + +P   + C
Sbjct: 21  QAFSELAREHNPCDWERHLRKVMRQLGFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDC 80

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY------------CSLTFDV 137
                      +L+   +   P+F    +      G    +             S+    
Sbjct: 81  YCCDGLLDIDPILKHCRQELVPMFWA--QQGRRARGRTRHFWQRREEHGLCHGLSIPLRY 138

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAY-QANMFKSYDVHWGKDFELTGREV 191
            R+R  L + F    +   D           +L  Y  + + + +      + +LT RE+
Sbjct: 139 ERLRGTLSVAFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPREL 198

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W S GKTS EI+ IL  S  TV+ ++ +  RK  + +R  A+  A    ++
Sbjct: 199 ECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 253


>gi|59940143|gb|AAX12610.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V++   +   P++          L E      G+   +      S     
Sbjct: 68  TENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTER 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   ++
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243


>gi|327190710|gb|EGE57792.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 240

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 90/240 (37%), Gaps = 22/240 (9%)

Query: 27  PTRSDLLARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSD 81
               D   R+  +             M  LT+ +G + FL++        ++ +  + ++
Sbjct: 1   MKLEDEFNRIEEVAAGFKTHYEVFKFMKGLTQDLGMTAFLIMTLPTVDFVEIGATKIITN 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-------------- 127
           WP ++V             V++R      P F+   E I    G                
Sbjct: 61  WPAEMVDYYDAHNLMVDSPVIRRMLRSTSP-FNYDVEAINTDRGEGKKSTVIDLFRRYGM 119

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFEL 186
            +        A    G M +       + + + +I  +A    +      +    K    
Sbjct: 120 EKGAYFPVHDAAGGRGAMSISGSRNFTMLE-MAKILFIATLIYDRLSQLTLNEKHKPIAF 178

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E++CL   + G+ S EIA +L +S N VNN+I S+++K    TR+ A+  A+R NI+
Sbjct: 179 TSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238


>gi|146454419|gb|ABQ41883.1| LuxR [Acidovorax citrulli]
          Length = 242

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 80/236 (33%), Gaps = 19/236 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-----IVSSDWPF 84
            D + R                    +G  HF L    L Q+    S     ++S ++P 
Sbjct: 4   RDFIQRANQALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPS 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCP-----------VFHTLPENITPPAGMDNRYCSL 133
             V             V +   +   P               + +  T     D     +
Sbjct: 64  RWVSHYIARNYYLEDPVRRHAPQAMSPYRWKDVSAQGDREAHIMDEATDAGLADGLGLPI 123

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA---NMFKSYDVHWGKDFELTGRE 190
                RI +  +    +  +     +    L+ A+ A     F +         +LT RE
Sbjct: 124 HEPGGRIFLATVASHQQLTLGNDACVRAYALVTAFHALYTMRFATEQTQIPTAVKLTSRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECLTW++ GK+S EI  I+ IS +TVN ++ + M K  T +R  A   A    ++
Sbjct: 184 AECLTWVAYGKSSREIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLI 239


>gi|222086655|ref|YP_002545189.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724103|gb|ACM27259.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 243

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 17/231 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS--SDWPFDLVRC 89
           L A +       ++   +   +   G S    +   + ++  L  +V   S  P   +R 
Sbjct: 13  LSAELATARTQTAFAQALERTSSAFGFSQVAFLNAPVSEDSMLTPLVIEGSVQP-QFLRD 71

Query: 90  MALSEKDKYYNVLQRPTELFCPVF-HTLPENITPPAGMDNRY------------CSLTFD 136
               +  +   +LQR  +   P   H L +NI+    +                  +  +
Sbjct: 72  FDRQQLLRRCPMLQRVRDSVMPRAWHLLEKNISQDMELPRELHALLLSHNCPMGIVIPIN 131

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195
            +  +  +         + +  L E+ ++     +++     + G     L+ RE+E + 
Sbjct: 132 SSDGQRLVFWFMGNRSSLGQSELNELNMIMLQAHDIYNCIKRNDGSVLHMLSARELEVVR 191

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  ++
Sbjct: 192 WTAQGKTSVEIGQILSLSDHTVNAYMMNAIKKLDCVNRTQLVAKAIRLKLI 242


>gi|241205786|ref|YP_002976882.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859676|gb|ACS57343.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 241

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 87/251 (34%), Gaps = 35/251 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-V 78
            S+++    +S L A +        +   +  ++   G SH  L+     ++  L  + +
Sbjct: 1   MSYMTTSERQSLLSAELATARTRSLFAQALGRVSTAFGLSHATLMHAPSPEDLLLKPLLI 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN------------------- 119
            S  P   VR    +   +      R  +   P    L +                    
Sbjct: 61  ESSLPVAYVRDFDRAHMMRGCPFGVRLRQSAVPPAWHLNDASNGQAFPAELRALMLRHAI 120

Query: 120 ----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                 P    D +     F   R  +G         IIL          A    N  K 
Sbjct: 121 PAGVAMPTIAADGQRLVFWFCGERAALGQSETNELAMIILH---------ALDAYNAVKR 171

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +        L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+ 
Sbjct: 172 NE--ECAHNALSTRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQ 229

Query: 236 AIAYAVRNNIV 246
            +A A+R  ++
Sbjct: 230 LVAKAIRLKLI 240


>gi|262196287|ref|YP_003267496.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262079634|gb|ACY15603.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM
           14365]
          Length = 254

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 9/116 (7%)

Query: 140 IRIGLMLLFPKG--RIILRDRLWEIGLLAAYQ-ANMFKSYDVHWG------KDFELTGRE 190
            R+G++ L  +      LRDR+     +A +  +++ +  + H+       + ++L+ RE
Sbjct: 137 GRLGILSLATRDVYSAELRDRIRHAIPIAQFVLSHLVEKLEAHFHVRLEDLQRYKLSERE 196

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W++ GKTS EI  ILGI+  T   ++ + M+K     RS A+A A+++ ++
Sbjct: 197 RECLRWVAAGKTSWEIGHILGIAERTAIFHLNNAMKKLGAVNRSHAVARALQHGVI 252


>gi|59940089|gb|AAX12583.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEATIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940109|gb|AAX12593.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-46]
          Length = 260

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|167839488|ref|ZP_02466172.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           thailandensis MSMB43]
          Length = 239

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            +R   GL+ +      +    +  + L   + ANM  S         +       LT R
Sbjct: 120 ASRGVFGLLTIARHTDRLTIAEINHLTLQTNWLANMSHSLMSRFLVPKLAPESGVALTHR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W  EGKT+ EI  ILGIS  TVN ++ +++ K     +  A+  A+   +V
Sbjct: 180 EREVLCWTGEGKTACEIGQILGISERTVNFHVNNVLDKLGATNKVQAVVKAIAMGLV 236


>gi|209550397|ref|YP_002282314.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536153|gb|ACI56088.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 241

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 89/240 (37%), Gaps = 13/240 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-V 78
            S+++    +S L   +        +   +  ++   G SH  L+     ++  L  + +
Sbjct: 1   MSYMTTSERQSSLSVELATARTRSLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKPLLI 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
            S  P   ++    +   +      R  E   P    L +     A        +     
Sbjct: 61  ESSLPAAYIKEFDRAHMMRGCPFGLRLRESAVPPAWHLNDAANGQAFPAELRALMLRHAI 120

Query: 139 RIRIGLMLLF-----------PKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFEL 186
              + +  +             +   + +  + E+ ++  +  + + +           L
Sbjct: 121 PAGVAMPTIAANGQRLVFWFCGERAALGQSEVNELAMIILHALDAYNAVKRNEECAHNAL 180

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  ++
Sbjct: 181 STRELEVVRWTAQGKTSIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240


>gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 227

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 91/212 (42%), Gaps = 18/212 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           ++++Y+  S + +V  +  QE    ++V +  P  +V  + +   + Y     V Q+P  
Sbjct: 17  SISDYLELSGYSVVTANDGQEAL--AMVDNYHPDLIVTDIIMPRMNGYELVRRVRQQPAF 74

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWE 161
              PV          E I       + Y    F++  +   +  L  + +II  + RL  
Sbjct: 75  RLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLLERSQIIQSEYRLSH 134

Query: 162 IGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISR 214
              L ++  +             +       LT RE E L  ++ G ++ ++   L +S 
Sbjct: 135 KENLGSFVPSKEVEIPNSLSTHIQQSHLLASLTPREQEVLELLTHGFSNADMGHQLHLSP 194

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  Y++S++RKTAT  R+  + +A+++ +V
Sbjct: 195 RTVEKYVSSLLRKTATSNRAELVRFAMKHGLV 226


>gi|325293644|ref|YP_004279508.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325061497|gb|ADY65188.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 238

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 90/236 (38%), Gaps = 13/236 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDW 82
                ++ L   +        W   +  + +    S+  L++    +    L  +V S  
Sbjct: 2   PKTERQARLCRDLSAAIDRPQWLAALQQVMQAFSYSYVTLLKLPSIRNAYALPIVVESSL 61

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI----------TPPAGMD-NRYC 131
           P  +V  M    +     V++R      P + +L +            T   GM      
Sbjct: 62  PVWVVNAMTRDGELADCPVIKRGASSMMPQYWSLDDKDINCGSLLEVSTLLRGMGITSGL 121

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGRE 190
            +  +       LM       ++ +  L E+ ++A +    +        K    LT RE
Sbjct: 122 LVPVNGMDGNRHLMNFAGDCDVLSQGSLNELCMIALHALEAYDRLCRAGSKLPSPLTKRE 181

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ + W ++GKTS EIA +L IS +TVN Y+ + +RK     R+  +A  +R  ++
Sbjct: 182 LDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAIRKLDCVNRAQLVAKTIRLGLI 237


>gi|218677689|ref|ZP_03525586.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 240

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 24/235 (10%)

Query: 33  LARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLV 87
             R+  +             M  LT+ +G + FL +        ++ +  + ++WP ++V
Sbjct: 7   FNRIEEVAAGFNTHYEVFKYMKGLTQDLGMNAFLFMTLPTVDNVEIGATKIITNWPAEMV 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITPPAGMDNRYCS 132
                        V++R      P                  T+ E           Y  
Sbjct: 67  DYYDAHSLLIDSPVIRRMLRSTSPFNYDVEAINTNRGEGKKSTVIELFFRYGMEKGAYFP 126

Query: 133 LTFDVARIRIGLMLLFPKGR-IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +  D A  R  + +  P+   +I   +L  I  L   + +     + H  K  E T  E+
Sbjct: 127 VH-DAAGGRGAMSISGPRNFSMIEMAKLLFIATLIYDRLSQLTLNEKH--KPIEFTPGEL 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +CL   + G+   EIA +L ++ N VNN+I S ++K    TR+ A+  A+R NI+
Sbjct: 184 DCLRLTAGGRKGSEIAKLLDLTENVVNNHIGSAIKKLGCTTRTQAVVSALRLNII 238


>gi|88859162|ref|ZP_01133803.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2]
 gi|88819388|gb|EAR29202.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2]
          Length = 233

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 31/231 (13%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLV----------RWDLFQE--QKLDSIVSS 80
           + ++  ++        +  + +++ A ++                ++ E  + L  ++  
Sbjct: 17  IKKLEKVNSLSDLNNEVNNIAKFLNAKNYAFCVFSTNLNEQESVKIYGELGRALSRLIQD 76

Query: 81  D-----WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           D     +    V+ + LSE   ++ +     +    +F                   + F
Sbjct: 77  DNLIRTYCQTEVKPLKLSEITNFFELKDSRKQKGFSIFCDT--------------LIIPF 122

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                  G ++L  +   +L++  ++  ++  Y  + FK       K    T RE+ECL 
Sbjct: 123 KGTLYDFGCLILRTENNKLLKEEHFKSIVIVIYMYDAFKRCKKKSNKTVNFTKREIECLK 182

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EI+ IL I+  TVN +IA+ +RKT +  R  AIA      I+
Sbjct: 183 WATEGKTSWEISKILTITDRTVNYHIANCIRKTNSSNRQQAIAKFYAMGIL 233


>gi|66277272|gb|AAY44567.1| LuxR-like protein [Aeromonas sp. ym4]
          Length = 260

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLLEDDPQDALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940129|gb|AAX12603.1| LuxR-type transcriptional regulator [Aeromonas sp. ABJ]
          Length = 260

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 87/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  ++ +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLLSVTDGDRLAELIGRFTLGMGYDYYRFALIIPTSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSCGIL 243


>gi|59940049|gb|AAX12563.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. veronii]
          Length = 260

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|46371737|gb|AAS90557.1| transcriptional activator [Burkholderia pseudomallei]
          Length = 239

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            +R   GL+ +      +    +  + L A + ANM  S         +       LT R
Sbjct: 120 ASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 180 ERKVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|218682848|ref|ZP_03530449.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCM 90
           L A +        +   +  ++   G SH  L+     ++  L  + + +  P   +R  
Sbjct: 2   LSAELAGARTRSLFAQALGRVSSAFGLSHATLMHAPSSEDLLLRPLLIETSLPAAYIREF 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF-- 148
             +   +      R  E   P    L + +   A        +        I +  +   
Sbjct: 62  DRAHMMRGCPFGLRLRESAVPPVWHLNDAVNGQAFPAELRALMLRHAIPAGIAMPTITAD 121

Query: 149 ---------PKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWIS 198
                     +   + +  + E+ ++  +  + + +           L+ RE+E + W +
Sbjct: 122 GQRLVFWFCGERAALAQSEVNELAMIILHALDAYNAVKRNEECTHNALSIRELEVVRWTA 181

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  ++
Sbjct: 182 QGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 229


>gi|59940067|gb|AAX12572.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +       +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYFEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940075|gb|AAX12576.1| LuxR-type transcriptional regulator [Aeromonas caviae]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277278|gb|AAY44570.1| LuxR-like protein [Aeromonas sp. CCRC 13980]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +       +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYFEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940151|gb|AAX12614.1| LuxR-type transcriptional regulator [Aeromonas sp. 11m]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277254|gb|AAY44558.1| LuxR-like protein [Aeromonas caviae]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTLVTDGNRLAEVIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
            L+       ++Q       P++          L E      G+   +      S     
Sbjct: 68  TLNNMLACDPIIQLARRQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGRE 190
           A    G++    + R      L    +L+            + +           LT RE
Sbjct: 128 AAGENGILSFITRERASSDLMLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEPLTERE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940123|gb|AAX12600.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
 gi|59940137|gb|AAX12607.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940103|gb|AAX12590.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-30]
 gi|59940105|gb|AAX12591.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940071|gb|AAX12574.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940073|gb|AAX12575.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940077|gb|AAX12577.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
 gi|59940085|gb|AAX12581.1| LuxR-type transcriptional regulator [Aeromonas sp. AE-51]
 gi|59940087|gb|AAX12582.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940099|gb|AAX12588.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-24]
 gi|59940113|gb|AAX12595.1| LuxR-type transcriptional regulator [Aeromonas jandaei]
          Length = 260

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277276|gb|AAY44569.1| LuxR-like protein [Aeromonas sp. CCRC 13881]
          Length = 260

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277274|gb|AAY44568.1| LuxR-like protein [Aeromonas sp. CCRC 13880]
          Length = 260

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 82/236 (34%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGRE 190
           A    G++      R      L    +L+            + +           LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMCNYIFEAAIRIVRVSLRDDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940061|gb|AAX12569.1| LuxR-type transcriptional regulator [Aeromonas encheleia]
 gi|59940121|gb|AAX12599.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940045|gb|AAX12561.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940125|gb|AAX12601.1| LuxR-type transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida]
 gi|59940159|gb|AAX12618.1| LuxR-type transcriptional regulator [Aeromonas sp. 17m]
          Length = 260

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940091|gb|AAX12584.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940093|gb|AAX12585.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940127|gb|AAX12602.1| LuxR-type transcriptional regulator [Aeromonas sp. Manipal A1]
 gi|59940139|gb|AAX12608.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940153|gb|AAX12615.1| LuxR-type transcriptional regulator [Aeromonas sp. 12m]
 gi|59940161|gb|AAX12619.1| LuxR-type transcriptional regulator [Aeromonas sp. 19m]
          Length = 260

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940095|gb|AAX12586.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940097|gb|AAX12587.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|89027173|gb|ABD59317.1| AhyR [Aeromonas hydrophila]
          Length = 260

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|190890862|ref|YP_001977404.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190696141|gb|ACE90226.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 240

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 22/234 (9%)

Query: 33  LARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLV 87
             R+                M  LT+ +G + FL++        ++ +  + ++WP ++V
Sbjct: 7   FNRIEEAAAGFNTHYEVFKYMKGLTQGLGMTAFLIMTLPTVDFVEIGATKIITNWPAEMV 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCSL 133
                        V++R      P  + +                ++    GM+      
Sbjct: 67  DYYDSHNLMVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFP 126

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVE 192
             D A  R  + +   +   +L   + +I  +A    +      +    K    T  E++
Sbjct: 127 VHDAAGGRGAMSISGSRNFTML--EMAKILFIATLIYDRLSQLTLNEKHKPIAFTSSELD 184

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL   + G+ S EIA +L +S N VNN+I S+++K    TR+ A+  A+R NI+
Sbjct: 185 CLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238


>gi|59940115|gb|AAX12596.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|6572977|gb|AAF17494.1|AF195615_2 transcriptional activator PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 17/230 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ AR + +    + T+R+           + +     F   +  + +  ++P D V+  
Sbjct: 15  NIFARTMDMQEFTAVTLRVLREL-RFDFFAYGMCSVTPFMRPR--TCMYGNYPEDWVQRY 71

Query: 91  ALSE------KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIG 143
             +         K+  V   P      +F   P+  +     +  +  +     A+ R+G
Sbjct: 72  QAANYAVIDPTVKHSKVSSAPILWSNELFRGCPDLWSEANDSNLCHGLAQPSFNAQGRVG 131

Query: 144 LMLLFPKGRIILRDRLWEIGLLA-AYQA------NMFKSYDVHWGKDFELTGREVECLTW 196
           ++ L  K   I       + L+  A+ A      +  +S    +  D E +GRE + L W
Sbjct: 132 MLSLARKDNPISLQEFEALKLMTKAFAAAIHEKISELESDVRVFNTDVEFSGRECDVLRW 191

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++GKTS+EI VI+G+  +TVN +  +I RK     R  A++YAV    +
Sbjct: 192 TADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|145300631|ref|YP_001143472.1| transcriptional activator AsaR [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|61218504|sp|P0A3J5|AHYR_AERHY RecName: Full=Transcriptional activator protein AhyR/AsaR
 gi|61218505|sp|P0A3J6|AHYR_AERSA RecName: Full=Transcriptional activator protein AhyR/AsaR
 gi|899145|emb|CAA61654.1| AhyR [Aeromonas hydrophila]
 gi|1519237|gb|AAB70018.1| transcriptional activator [Aeromonas salmonicida]
 gi|142853403|gb|ABO91724.1| transcriptional activator AsaR [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940081|gb|AAX12579.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940101|gb|AAX12589.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940163|gb|AAX12620.1| LuxR-type transcriptional regulator [Aeromonas sp. 26m]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940145|gb|AAX12611.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 21725]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 86/236 (36%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA-----AYQANMFKSYDVHWGKDFE--LTGRE 190
           A    G++      R      L    +L+      +QA +          + +  LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMSNYIFQAAIRNVRVSLRDDEPQGALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|146312149|ref|YP_001177223.1| DNA-binding transcriptional activator SdiA [Enterobacter sp. 638]
 gi|145319025|gb|ABP61172.1| transcriptional activator SdiA [Enterobacter sp. 638]
          Length = 240

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 27/238 (11%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R +   R   +         +   T+ +   ++ L  R  + F   K+   + S +P + 
Sbjct: 10  RRNCFLRFQEMGSADEVYEELQRQTQALEFDYYSLCVRHPVPFTRPKIS--IHSSYPAEW 67

Query: 87  VRCM------ALSEKDKYYNVLQRPTELFCPVF------------HTLPENITPPAGMDN 128
           +         A+    K  N LQ        +F            H L + IT    + N
Sbjct: 68  ISQYQSENYYAIDPVLKRENFLQGHLPWTDALFADAQALWDGARDHGLRKGITQCLMLPN 127

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                       + G M+   +  + L+  L ++ L    +      +++    + + + 
Sbjct: 128 HALGFLSVSRTSQFGKMMDSDEIELRLQ-VLVQMALTTLLR----FEHEMVMPPEMKFSK 182

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA     +
Sbjct: 183 REKEILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGFI 240


>gi|66277270|gb|AAY44566.1| LuxR-like protein [Aeromonas sp. ym3]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940135|gb|AAX12606.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940133|gb|AAX12605.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940033|gb|AAX12555.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 88/245 (35%), Gaps = 27/245 (11%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV----GASHFLLVRWDLFQEQKLDSIVSSDW 82
             +  LL  +  L        R+  L        G  ++          Q+   ++ +  
Sbjct: 1   MKQDQLLEYLEHLTTVTD-EDRLAELISRFTLGMGYDYYRFAVIIPMSMQRPKVVLFNQC 59

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY---- 130
           P   V+    +       ++Q   +   P++          L E      G+   +    
Sbjct: 60  PDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRN 119

Query: 131 -CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------- 182
             S     A    G++      R    D L E   + ++ +N      +   +       
Sbjct: 120 GISFPLHGAAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDD 178

Query: 183 -DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V
Sbjct: 179 PQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGV 238

Query: 242 RNNIV 246
            + I+
Sbjct: 239 SSGIL 243


>gi|59940047|gb|AAX12562.1| LuxR-type transcriptional regulator [Aeromonas jandaei]
 gi|59940057|gb|AAX12567.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
 gi|59940079|gb|AAX12578.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940147|gb|AAX12612.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 70363]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|149193353|gb|ABR21211.1| PhzR [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 241

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 17/213 (7%)

Query: 49  MYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE------KDKYYNV 101
           + AL E       + +     F   +  + +  ++P D V+    +         K+  V
Sbjct: 31  LRALRELRFDFFAYGMCSVTPFMRPR--TYMYGNYPEDWVQRYQAANYAVIDPTVKHSKV 88

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
              P      +F   P+  +     + R+  +      + R+G++ L  K   I      
Sbjct: 89  SSSPILWSNELFRGCPDLWSEANDSNLRHGLAQPSFNTQGRVGVLSLARKDNPISLQEFE 148

Query: 161 EIGLLA-AYQA------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
            + ++  A+ A      +  +S    +  D E +GRE + L W ++GKTS+EI VI+G+ 
Sbjct: 149 ALKVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADGKTSEEIGVIMGVC 208

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TVN +  +I RK     R  A++YAV    +
Sbjct: 209 TDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|288934569|ref|YP_003438628.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889278|gb|ADC57596.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22]
          Length = 240

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 17/233 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R D+L +   +         +   TE +   ++ L  R  + F   ++     S +P   
Sbjct: 10  RRDMLHQFQSVAAGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQ--STYPRAW 67

Query: 87  VRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +             VL+              LF                     C    +
Sbjct: 68  MSHYQAENYFAIDPVLRPENFMRGHLPWEDGLFRDAAALWEGARDHGLKKGVTQCLTLPN 127

Query: 137 VARIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
            A+  + +            D L     +    +  A +    ++    + + + RE+E 
Sbjct: 128 HAQGFLSVSANNRLPGSYPDDELEMRLRMLTELSLLALLRLEDEMVMPPEMKFSRRELEI 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W +EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV   ++
Sbjct: 188 LKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240


>gi|59940117|gb|AAX12597.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTLVTDGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
            ++       ++Q       P++          L E      G+   +      S     
Sbjct: 68  TVNNMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--------WGKDFELTGR 189
           A    G++    + R    D L E   + ++ +N      +               LT R
Sbjct: 128 ATGENGILSFITRERA-SSDLLLESSPILSWMSNYIFEAAIRIVRQSMREEDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|167840217|ref|ZP_02466901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           thailandensis MSMB43]
          Length = 230

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 79/227 (34%), Gaps = 19/227 (8%)

Query: 39  LDCTVSWTMRMYALTEYV-------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L  T+  +  +  L E         G  H  +V            +VS  +P + V    
Sbjct: 2   LSATLPESRDVRTLIETFRQAALQIGYQHHAIVELSGASHPASIDVVSLHYPSEWVEHYT 61

Query: 92  LSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRY---CSLTFDVARIRI 142
            S+      V +   +   P          L E        D       S+       R+
Sbjct: 62  RSDYFAIDPVHRAAFQYSTPFSWNDIATSNLRERHLLMEAEDAGLDNGISIPLHQPLGRV 121

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDFELTGREVECLTWISE 199
            L+ L         D  W    L   Q N+                LT RE  CLTW++ 
Sbjct: 122 LLVSLSGTAPTHDADAKWRNAYLLGMQFNLQFQSMRTCSPIPPSVHLTDREQMCLTWVAR 181

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK+S  IA +L IS+ TV+ +I + M K  T++R+ A   A R  ++
Sbjct: 182 GKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228


>gi|66277264|gb|AAY44563.1| LuxR-like protein [Aeromonas sp. SF8-170]
          Length = 260

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940031|gb|AAX12554.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 87/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTSVTDEDRLAELIGRFTLGMGYDYYRFAVIIPMSMQRRKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|260770016|ref|ZP_05878949.1| transcriptional activator protein vanR [Vibrio furnissii CIP
           102972]
 gi|260615354|gb|EEX40540.1| transcriptional activator protein vanR [Vibrio furnissii CIP
           102972]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 19/189 (10%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-----------FHTLPENITPP 123
           ++I++ ++P    +    +       ++Q     F P+            H + E     
Sbjct: 50  ETIITDNYPASWRQQYDEAGFMHVDPIVQYSMTNFLPIRWSQIPVASNQAHEMFEEARIN 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRI---ILRDRLWEIGL---LAAYQANMFKSYD 177
              +    S+     R   G++           +  D +    L   L ++  +      
Sbjct: 110 GLKEG--FSIPIHGLRGEFGMLSFATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCH 167

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  ELT RE +CLTW +EGK++ EIA I+  S  TV  +IA+  +K     R  AI
Sbjct: 168 KDAAPRIELTARENQCLTWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAI 227

Query: 238 AYAVRNNIV 246
             A+    +
Sbjct: 228 TKAILGGYI 236


>gi|238895474|ref|YP_002920209.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262043448|ref|ZP_06016571.1| regulatory protein SdiA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330001006|ref|ZP_08303866.1| regulatory protein SdiA [Klebsiella sp. MS 92-3]
 gi|238547791|dbj|BAH64142.1| LuxR/UhpA-family transcriptional activator for cell division
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259039190|gb|EEW40338.1| regulatory protein SdiA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328537810|gb|EGF64005.1| regulatory protein SdiA [Klebsiella sp. MS 92-3]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 17/233 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R D+L +   +         +   TE +   ++ L  R  + F   ++     S +P   
Sbjct: 10  RRDMLHQFQSMATGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQ--STYPRAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELF------CPVFHTLPENITPPAG----MDNRYCSLTFD 136
           +             VL+    +         +F   P                 C    +
Sbjct: 68  MSHYQAENYFAIDPVLRPENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPN 127

Query: 137 VARIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
            A+  + +            D L          +    +    ++    + + + RE+E 
Sbjct: 128 HAQGFLSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEI 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W +EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV   ++
Sbjct: 188 LKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240


>gi|116254365|ref|YP_770203.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259013|emb|CAK10122.1| LuxR-family regulator [Rhizobium leguminosarum bv. viciae 3841]
          Length = 251

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDN 128
           +  +  +  +  PF     MA   KD Y+    R  ++    F H L +  I P  G + 
Sbjct: 81  DPMVRYLAHAQRPFRWREAMAAFRKDAYHR---RMEQMMVDAFGHGLEDGYIFPIHGRNG 137

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
              SL+     I +  + +      + R   W +  L        ++ +     D  LT 
Sbjct: 138 ILASLSLAGKPIELSPVEIALL-EAVARKAFWRLLDLKGEA----QALETVLPADTPLTR 192

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+ ++
Sbjct: 193 REMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGLI 250


>gi|222149400|ref|YP_002550357.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736383|gb|ACM37346.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 241

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 90/235 (38%), Gaps = 16/235 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS-SDWPFDL 86
            ++ L   +  ++        +  + +  G SH  ++      +  L  +V  +  P + 
Sbjct: 6   RQTLLSTEITAMESREHCAEILRTVAQAFGLSHGSILLAPCATDVHLLPLVMETTLPMEF 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCP----VFHTLPENITPPAGMDNRYC----------S 132
                  +  K+  V+++      P    +    P ++        R             
Sbjct: 66  GHEFDRHQFVKFCPVVKKFAGSILPRTWDMKFREPNDMAEEWPPAMRDLMMRFKLIVGVV 125

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREV 191
             F     R+  M        + +  + E+G+LA    + +         + + L+ RE+
Sbjct: 126 FIFPSLDSRLYFMRFDGDRSPLSQCEVNELGMLAMAVFDTYDRLRRTELMNVDVLSVREL 185

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W ++GKTS EI  IL +S +T+N Y+ + M+K     R+  +A A+R  ++
Sbjct: 186 EVLRWTAQGKTSVEIGQILSLSDHTINAYMTTAMKKLDCVNRTQLVAKAIRLKLI 240


>gi|59940035|gb|AAX12556.1| LuxR-type transcriptional regulator [Aeromonas caviae]
          Length = 260

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 87/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTTVTDEDRLAELISRFTLGMGYDYYRFAVIIPMSMQRRKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|296101736|ref|YP_003611882.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056195|gb|ADF60933.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 83/233 (35%), Gaps = 17/233 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R D   R   L         +   T+ +   ++ L  R  + F   ++   V + +P   
Sbjct: 10  RRDCFLRFQALTSASEVYQELQRQTQALEFDYYALCLRHPVPFTRPRIS--VHATYPQRW 67

Query: 87  VRCMALSEKDKYYNVL--QRPTELFCP----VFHTLPENITPPAGMDNR----YCSLTFD 136
           +             VL  +   +   P    +F               R     C +  +
Sbjct: 68  MAQYQSENYFAIDPVLKPENFIQGHLPWTDELFADAEALWNGARDHGLRKGITQCLMLPN 127

Query: 137 VARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFK-SYDVHWGKDFELTGREVEC 193
            A   + +     +   +  + L      LL     ++ +   ++    + + + RE E 
Sbjct: 128 HALGFLSVSCTSVQAGAVTSEELELRLQMLLQMALTSLLRFEDEMVMPPEMKFSKREREI 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 188 LKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|206576935|ref|YP_002237709.1| regulatory protein SdiA [Klebsiella pneumoniae 342]
 gi|290508769|ref|ZP_06548140.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55]
 gi|206565993|gb|ACI07769.1| regulatory protein SdiA [Klebsiella pneumoniae 342]
 gi|289778163|gb|EFD86160.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 17/233 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R D+L +   +         +   TE +   ++ L  R  + F   ++     S +P   
Sbjct: 10  RRDMLHQFQSVAAGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQ--STYPRAW 67

Query: 87  VRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +             VL+              LF                     C    +
Sbjct: 68  MSHYQAENYFAIDPVLRPENFMRGHLPWEDGLFRDAAALWDGARDHGLKKGVTQCLTLPN 127

Query: 137 VARIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
            A+  + +            D L     +    +  A +    ++    + + + RE+E 
Sbjct: 128 HAQGFLSVSANNRLPGSYPDDELEMRLRMLTELSLLALLRLEDEMVMPPEMKFSRRELEI 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W +EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV   ++
Sbjct: 188 LKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240


>gi|59940157|gb|AAX12617.1| LuxR-type transcriptional regulator [Aeromonas sp. 15m]
          Length = 260

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYEYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|330820206|ref|YP_004349068.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli
           BSR3]
 gi|327372201|gb|AEA63556.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli
           BSR3]
          Length = 240

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            AR   GL+ +  +   +    +  + L A + AN+  S         +       LT R
Sbjct: 121 AARGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGKFLVPKLSPAASVTLTKR 180

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+  A+   ++
Sbjct: 181 EREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGATNKVQAVVKAIGMGLI 237


>gi|59940149|gb|AAX12613.1| LuxR-type transcriptional regulator [Aeromonas sp. 1m]
          Length = 260

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDEPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLVWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|315182540|gb|ADT89453.1| Transcriptional activator protein vanR [Vibrio furnissii NCTC
           11218]
          Length = 240

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 19/189 (10%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-----------FHTLPENITPP 123
           +++++ ++P    +    +       ++Q     F P+            H + E     
Sbjct: 50  ETLITDNYPASWRQQYDEAGFMHVDPIVQYSMTNFLPIRWSQIPVASNQAHEMFEEARIN 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRI---ILRDRLWEIGL---LAAYQANMFKSYD 177
              +    S+     R   G++           +  D +    L   L ++  +      
Sbjct: 110 GLKEG--FSIPIHGLRGEFGMLSFATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCH 167

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  ELT RE +CLTW +EGK++ EIA I+  S  TV  +IA+  +K     R  AI
Sbjct: 168 KDAAPRIELTARENQCLTWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAI 227

Query: 238 AYAVRNNIV 246
             A+    +
Sbjct: 228 TKAILGGYI 236


>gi|121663600|emb|CAM12358.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae]
          Length = 239

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            AR   GL+ +  +   +    +  + L A + AN+  S         +       LT R
Sbjct: 120 AARGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236


>gi|188586933|ref|YP_001918478.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351620|gb|ACB85890.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 228

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  + E        D    +L   +  +  G   + P    I    L E   LA    N 
Sbjct: 99  FEIVKEGAAGFLLKDVETPTLVQAIQEVNKGNSFIHPT---ITHKLLGEFNRLA---QNS 152

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            ++         ELTGRE E L  +++G T+ EI+  L IS  TV N++++I+RK     
Sbjct: 153 PRNIKSDEAVQSELTGREKEILELMAQGYTNKEISKELYISEKTVKNHVSNILRKMDVTD 212

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+  A++  +V
Sbjct: 213 RTQAVITALKCGVV 226


>gi|238024809|ref|YP_002909041.1| AHL receptor [Burkholderia glumae BGR1]
 gi|55509000|gb|AAV52804.1| AHL receptor [Burkholderia glumae BGR1]
 gi|237879474|gb|ACR31806.1| AHL receptor [Burkholderia glumae BGR1]
          Length = 239

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            AR   GL+ +  +   +    +  + L A + AN+  S         +       LT R
Sbjct: 120 AARGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+  A+   ++
Sbjct: 180 EREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236


>gi|59940053|gb|AAX12565.1| LuxR-type transcriptional regulator [Aeromonas schubertii]
          Length = 260

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIFPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W S GKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + N I+
Sbjct: 187 ETECLFWASRGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAMGISNGIL 243


>gi|209548400|ref|YP_002280317.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534156|gb|ACI54091.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 240

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 24/235 (10%)

Query: 33  LARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLV 87
             R+  +             M  LT+ +G + FL++        ++ +  + ++WP ++V
Sbjct: 7   FNRIEEVAAGFNTHYEVFKYMKGLTQDLGMTAFLIMTLPTVDFAEIGATKIITNWPAEMV 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---------NRY-----CSL 133
                        V++R      P F+   E I    G           NRY        
Sbjct: 67  DYYDAHNLMVDSPVIRRMLRSTSP-FNYDVEAINTDRGEGKKSTVIELFNRYGMEKGAYF 125

Query: 134 TFDVARIRIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               A    G M +       +I   +L  I  L   + +     + H  K  E T  E+
Sbjct: 126 PVHDAAGGRGAMSISGSRNFSMIEMAKLLFIATLIYDRLSQLTLNEKH--KPIEFTRNEL 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +CL   + G+   EIA +L ++ N VNN+I S ++K    TR+ A+  A+R NI+
Sbjct: 184 DCLRLTAGGRKGAEIAKLLDLTENAVNNHIGSAIKKLGCTTRTQAVVSALRLNIL 238


>gi|229588916|ref|YP_002871035.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360782|emb|CAY47640.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 235

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 21/221 (9%)

Query: 44  SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
            W   +  +   +G   +LL           + I+++ +P D ++        +   +++
Sbjct: 16  DWERHLRKILRRIGYERYLLSLGPSTTHDPFNRIMTT-YPSDWLKRYKDENFIQVDPIIR 74

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRY--------------CSLTFDVARIRIGLMLLFP 149
                F P+F           G  NR+                L F+     + +     
Sbjct: 75  HCRHHFAPLFWG--RARLKARGCTNRFWKEREGYGLLRGVSIPLRFNEMAGSLNVAQCVS 132

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHW----GKDFELTGREVECLTWISEGKTSDE 205
               +  D    +G+L      + +    H          LT RE E L W   GKT+ E
Sbjct: 133 DTDELADDLNGPLGMLFMLIPFLLEGSQKHLKTVGEPPSSLTLRESEVLKWTGVGKTTWE 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ ILG S  T+N +IA+  RK  + +R  A+  A+   ++
Sbjct: 193 MSCILGCSERTINFHIANASRKLGSFSRRQAVGVALAQGLI 233


>gi|59940141|gb|AAX12609.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 84/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L               +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFNSSADGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V++   +   P++          L E      G+   +      S     
Sbjct: 68  TENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTER 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   ++
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKEVSTGLL 243


>gi|238917970|ref|YP_002931487.1| two-component system, NarL family, response regulator DegU
           [Eubacterium eligens ATCC 27750]
 gi|238873330|gb|ACR73040.1| two-component system, NarL family, response regulator DegU
           [Eubacterium eligens ATCC 27750]
          Length = 214

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                   D+ + +L   +  +  G   + P    +L   L E               DV
Sbjct: 98  GCDGYILKDSNFDTLKKAIFSVYAGETYIEPSLMPLLNASLAE--------------RDV 143

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              K  ELT RE+E L  I+ G  + EIA  L IS  TV N++++I +K     R+ A  
Sbjct: 144 LKDKVSELTRRELEVLKMIASGAFNKEIASTLNISERTVKNHVSNIFKKIGVSDRTQAAV 203

Query: 239 YAVRNNIV 246
           +A++NNI+
Sbjct: 204 FAIKNNII 211


>gi|330811856|ref|YP_004356318.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379964|gb|AEA71314.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 237

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 20/234 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLV 87
           DLL R   L C          +  +     F    +  +    ++    +  +++P+   
Sbjct: 6   DLLLR--KLSCEKDLQTAYRLVLNFFNNQGFEYCAFAAYLGSPDKHTSKVNLNNYPYGWD 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPA--GMDNRYCSLTFDVAR 139
           R    +       ++    +   P      VF   P+        G+   +     D   
Sbjct: 64  RLYEQNGYASNDPLVAHCNQSSLPILWDETVFAHAPKLWRELNRQGLKYGWTQSVHDEQG 123

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-------SYDVHWGKDFELTGREVE 192
               L  L      I  +  +     A + +           S  +       L+ RE+E
Sbjct: 124 AHCSLFSLARSHCPIDIEEHYANLGYAIFASQRLHALASKKLSDALAIQPKCHLSPREIE 183

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W +EGKT+ E+  IL +S  TVN ++ S MRK     +  A+A A + +++
Sbjct: 184 VLRWSAEGKTASEVGRILCLSERTVNFHVCSCMRKLNVSNKISAVAKAAQIHVI 237


>gi|218463347|ref|ZP_03503438.1| transcriptional regulator, LuxR family protein [Rhizobium etli Kim
           5]
          Length = 240

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 93/238 (39%), Gaps = 24/238 (10%)

Query: 30  SDLLARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPF 84
            D   R+  +             M  LT+ +G + FL +        ++ +  + ++WP 
Sbjct: 4   EDEFNRIEEVAAGFKTHYEVFKYMKGLTQDLGMNAFLFMTLPTVDIVEIGATKIITNWPA 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---------NRY----- 130
           ++V             V++R      P F+   E I    G           NRY     
Sbjct: 64  EMVDYYDAHNLMIDSPVIRRMMRSTSP-FNYDVEAINTNRGGGKKSTVIELFNRYGMEKG 122

Query: 131 CSLTFDVARIRIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  A    G M +       +I   +L  I  L   + +     + H  K  E T 
Sbjct: 123 AYFPVHDAAGGRGSMSISGSRNFSMIEMAKLLFIATLIYDRLSQLTLNEKH--KPIEFTR 180

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E++CL   + G+  +EIA +L ++ N VNN+I S+++K    TR+ A+  A+R NI+
Sbjct: 181 SELDCLRLTAGGRKGNEIAKLLDLTENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238


>gi|325520628|gb|EGC99691.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 109

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 46/100 (46%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L P    +L  +   +  L+    + F    +       LT RE E L W +EGKT+ EI
Sbjct: 7   LTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVALTAREREVLCWTAEGKTACEI 66

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 67  GQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 106


>gi|91974882|ref|YP_567541.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91681338|gb|ABE37640.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB5]
          Length = 242

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
              S   +        G S +++           D  +++ WP                 
Sbjct: 24  DGPSLIRQFETHIASGGFSAYIMAGLPSPGAGLADLTLANGWPRGWFELYVRENYIAVDP 83

Query: 101 VLQRPTELFCPV--------------FHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V +       P                H +  + T    +      L +D     I +  
Sbjct: 84  VPRHGATTVQPFEWSEAPYDRKQNRAAHKVMTHATEFGLVRGYCIPLHYDEGGAVISMAG 143

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
             P    + +  +  IG+   Y  N  +S      +   LT RE E L W + GKT+ EI
Sbjct: 144 DQPDLDPVAKGAMQLIGV---YAHNRIRSLHRPKPQRRLLTSRECEILLWAAHGKTAWEI 200

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++IL I+  TV  ++    +K     R+ A+A A+   ++
Sbjct: 201 SIILHIAERTVKFHLIEASKKLNAVNRTAAVAKALAFGLI 240


>gi|260598411|ref|YP_003210982.1| DNA-binding transcriptional activator SdiA [Cronobacter turicensis
           z3032]
 gi|260217588|emb|CBA31841.1| Regulatory protein sdiA [Cronobacter turicensis z3032]
          Length = 241

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 16/233 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R ++  R   +  +      +   T+ +   +F L         +    + + +P   + 
Sbjct: 10  RREMTTRFQEIQDSGDIYSLLKTETQNMEYDYFALCVRHPVPFTRPKLTLHTTYPEAWLE 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPV------FHTLPE---NITPPAGMDNRY--CSLTFDV 137
                       VL+    L  P+      F    E   N     G+      C +  + 
Sbjct: 70  HYQAENYFVIDPVLKPANYLIGPLSWNDALFAGAAEELWNAARDHGLVKGVTQCVIAPNR 129

Query: 138 ARIRIGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           A+  + +    P+G  +  D    RL  + +  +  A M          + +L+ RE E 
Sbjct: 130 AQGFLSVSGTSPRGHSMPDDELALRLQHL-VEQSLVAMMRLEDPAATVLEMKLSKREKEI 188

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 189 LQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAAIGLI 241


>gi|66277268|gb|AAY44565.1| LuxR-like protein [Aeromonas sp. ym2]
          Length = 260

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TDNHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLLEDDPQDALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS +IA ILGI+  TVN ++  + RKT +  R  AIA  V   I+
Sbjct: 187 ETECLFWASEGKTSGDIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSRGIL 243


>gi|66277266|gb|AAY44564.1| LuxR-like protein [Aeromonas sp. ym1]
          Length = 260

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       V++   +   P++          L E      G+   +      S     
Sbjct: 68  TDNHMLACDPVIRLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDNDPKDPLTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V    V
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGVSTGHV 243


>gi|59940041|gb|AAX12559.1| LuxR-type transcriptional regulator [Aeromonas eucrenophila]
          Length = 260

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 83/232 (35%), Gaps = 22/232 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+  + V   +P   V+  
Sbjct: 8   EYLEHLTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPRAEVFMQYPDPWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--------WGKDFELTGR 189
           A    G++      R    D L E   + ++ +N      +               LT R
Sbjct: 128 AAGENGILSFITSERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREHDPHEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGV 238


>gi|283832684|ref|ZP_06352425.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220]
 gi|291072359|gb|EFE10468.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220]
          Length = 240

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+++    + L         +  + + + +P   V 
Sbjct: 10  RRSMLLRFQEMATAEDVYNELQQQTQHLEFDFYALCVRHPVPFTRPKTSLYTTYPKAWVA 69

Query: 89  CMALSEKDKYYNVL--QRPTELFCPVFHTLPENITPPAGMDNRY---CSLTFDVARIRIG 143
                       VL  +  ++   P   TL  +  P       +     +T  +      
Sbjct: 70  HYQSENYFAIDPVLKPENFSQGHLPWSDTLFRDAQPLWDAARNHGLRKGMTQCLMLPNRA 129

Query: 144 LMLLFPKGRIILRDRLW------EIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLT 195
           L  L      I   RL        + LL     ++      D+    +   + RE E L 
Sbjct: 130 LGFLSVSRANIRNSRLANDEVELRMQLLVRESLSVLMRLEDDMVMVPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|59940111|gb|AAX12594.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +      +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRSLPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|310769028|gb|ADP21168.1| PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 17/213 (7%)

Query: 49  MYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           + AL E       + +     F   +  + +  ++P D V+    +        ++    
Sbjct: 31  LRALRELRFDFFAYGMCSVTPFMRPR--TYMYGNYPEDWVQRYQAANYAVIDPTVKHSKV 88

Query: 108 LFCPVF---HTLPENITPPAGMDNRYCSLTFDV----ARIRIGLMLLFPKGRII------ 154
              P+              +   + +           A+ R+G++ L  K   I      
Sbjct: 89  SSAPILWSNELFRGCADLWSEAKDSHLCHGLAQPSFNAQGRVGVLSLARKNNPISLQEFE 148

Query: 155 -LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
            L+         A  + +  +S    +  D E +GRE + L W ++GKTS+EI VI+G+ 
Sbjct: 149 ALKPVTRAFAAAAHEKISELESDVRVFNTDVEFSGRECDVLRWTADGKTSEEIGVIMGVC 208

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TVN +  +I RK     R  A++YAV    +
Sbjct: 209 TDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|150390890|ref|YP_001320939.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950752|gb|ABR49280.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 217

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 11/156 (7%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITP-PAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +  +    + + T++    FH   E +        N Y     +   +   +  +     
Sbjct: 66  QVLRRLKDMDKTTKVIMLTFHEDREYLFETINLGANGYVLKDAESDSLIKAIRDVAMGES 125

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVI 209
            I          LA+     F   D H  K+    +LT RE E LT I+EG+ + EIA  
Sbjct: 126 YIHPS-------LASQLVKEFNRRDDHHDKEPREGKLTKREYEVLTLIAEGQNNKEIASN 178

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L IS  TV N++++I +K     R+ A  YA ++NI
Sbjct: 179 LFISEKTVKNHVSNIFKKIHVNDRTQAAIYAYKHNI 214


>gi|312199008|ref|YP_004019069.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311230344|gb|ADP83199.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 239

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 2/155 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++        +     +   V     +           Y   +     +   +  +   
Sbjct: 83  GIAATGGVKRAVPGVKIVMLTVSDEENDLFEAIKAGAVGYLLKSIPPHEVADAVRSVHHG 142

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I         L+A + +    + D        LT RE+E L  ++EG+ + EIA  L
Sbjct: 143 QSLISPS--MASKLMAEFASIARGTDDRPRLHTPHLTARELEVLKLVAEGRANREIARKL 200

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 201 FISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235


>gi|83716740|ref|YP_439002.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167577397|ref|ZP_02370271.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167615548|ref|ZP_02384183.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142109|ref|ZP_05590371.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650565|gb|ABC34629.1| transcriptional regulator, LuxR family [Burkholderia thailandensis
           E264]
          Length = 230

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 81/208 (38%), Gaps = 22/208 (10%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-- 113
           +G  H  +V            +VS  +P + V     ++     + + R    +   F  
Sbjct: 26  IGYQHHAIVELSGTSHPASIDVVSLHYPSEWVEHYTRNDYF-TIDPVHRAAFRYSTPFPW 84

Query: 114 -----------HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                      H L E     AG+DN   S+       R+ L+ L         D  W  
Sbjct: 85  NDIATSNLRERHLLMEA--EDAGLDNG-ISIPLHQPLGRVLLVSLSGTAPTHDADAKWRN 141

Query: 163 GLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             L   Q N  +   +   +       LT RE  CLTW++ GK+S  IA +L IS+ TV+
Sbjct: 142 AYLLGMQFN-LQLQSMRTCRPIPPSVHLTDREQMCLTWVARGKSSWVIANMLDISKYTVD 200

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I + M K  T++R+ A   A R  ++
Sbjct: 201 FHIENAMEKLNTRSRTFAAVKATRQGLI 228


>gi|59940131|gb|AAX12604.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTTVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P +          LPE      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPNYWNRLDERARFLPEGSPDVMGLAAEFRLRHGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A     ++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENRILSFITAERA-SSDLLLESSPILSWMSNYIFQAAIRIVRVSLREDEPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|324113634|gb|EGC07609.1| autoinducer binding domain-containing protein [Escherichia
           fergusonii B253]
          Length = 251

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 89/243 (36%), Gaps = 37/243 (15%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL------------------- 68
           R  +L+R   +         +   T+ +   ++ L  R  +                   
Sbjct: 21  RRTMLSRFQEMASAEDVFQELQLQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVS 80

Query: 69  -FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +Q+    +I     P +  +   L   D  ++  Q   +      H L   +T    + 
Sbjct: 81  YYQQHNFLAIDPVLKPENFSQG-HLLWDDALFSEAQPLWDAAR--AHGLRRGVTQYLMLS 137

Query: 128 NRYCSL----TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           NR                I    L  K ++++R+ L    +LA  Q  M  +  + + K 
Sbjct: 138 NRALGFLSLSRMSAREGPIAHDELELKLQLLVRESLN---VLARVQHEMVMTPAMRFSK- 193

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
                RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA   
Sbjct: 194 -----RETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAAT 248

Query: 244 NIV 246
            I+
Sbjct: 249 GII 251


>gi|261340314|ref|ZP_05968172.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316]
 gi|288317405|gb|EFC56343.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316]
          Length = 240

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 82/233 (35%), Gaps = 17/233 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R     R   L C       +   T+ +   +F L  R  + F   K+   V S +P   
Sbjct: 10  RRKCFLRFQELTCADEVYQELQQQTQALEFDYFSLCVRHPVPFTRPKIS--VHSSYPDRW 67

Query: 87  VRCMALSEKDKYYNVL--QRPTELFCPVFHTLPENITPPAGMDNRY--------CSLTFD 136
           +             VL  +   +   P    L  +     G    +        C +  +
Sbjct: 68  MAQYKSENYFAVDPVLKPENFIQGHLPWTDELFADAQELWGGAQDHGIRKGITQCLMLPN 127

Query: 137 VARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMF--KSYDVHWGKDFELTGREVEC 193
            A   + +     +   I  + +   + +L            ++     + + + RE E 
Sbjct: 128 HALGFLSVSRTSLRENAIHHEEIELRLQMLVQMALTSLLRFEHETVMPPEMKFSKREREI 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 188 LKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|296114148|ref|ZP_06832803.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295979224|gb|EFG85947.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 237

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 13/183 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPP---AG 125
            ++ S +P D ++    +       V+      F P       V +   +N+       G
Sbjct: 54  YLIDSTYPDDWMQHYIDNCYQNIDPVIATARHEFLPYGWGSVGVRNKSQKNMMQEFQDIG 113

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIIL-RDRLWEIGLLAAYQANMFKSYDVHWGK-D 183
             + Y ++   V+   + L+ +    + I  RDR      +  Y A   +  +    K D
Sbjct: 114 FRSGY-AVPLPVSPSMLLLVGMASNDKEINFRDRTILQIAINQYHACYMQITNGGTSKED 172

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE ECL W+++GK + EI+ IL IS NTV  ++ +IM+K     R  A+  A+  
Sbjct: 173 CSLSDRERECLLWVAQGKNTLEISSILNISDNTVKYHLKNIMQKLGAHNRIQAVVQAINL 232

Query: 244 NIV 246
            ++
Sbjct: 233 GLI 235


>gi|218548547|ref|YP_002382338.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii
           ATCC 35469]
 gi|218356088|emb|CAQ88705.1| DNA-binding transcriptional activator [Escherichia fergusonii ATCC
           35469]
          Length = 251

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 89/243 (36%), Gaps = 37/243 (15%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL------------------- 68
           R  +L+R   +         +   T+ +   ++ L  R  +                   
Sbjct: 21  RRTMLSRFQEMASAEDVFQELQFQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVS 80

Query: 69  -FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +Q+    +I     P +  +   L   D  ++  Q   +      H L   +T    + 
Sbjct: 81  YYQQHNFLAIDPVLKPENFSQG-HLLWDDALFSEAQPLWDAAR--AHGLRRGVTQYLMLS 137

Query: 128 NRYCSL----TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           NR                I    L  K ++++R+ L    +LA  Q  M  +  + + K 
Sbjct: 138 NRALGFLSLSRMSAREGPIAHDELELKLQLLVRESLN---VLARLQHEMVMTPAMRFSK- 193

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
                RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA   
Sbjct: 194 -----RETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAAT 248

Query: 244 NIV 246
            I+
Sbjct: 249 GII 251


>gi|117619760|ref|YP_858670.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561167|gb|ABK38115.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 203

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/215 (23%), Positives = 77/215 (35%), Gaps = 37/215 (17%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           + R      T     ++   +  +G  +F LL+ + +  ++             L     
Sbjct: 10  IDRFTKAKKTSDIQQQLERFSHQMGFDYFRLLIIFPISMQKSH---------VALFNNCP 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            S  D Y    +R      PV     +   P                        +F   
Sbjct: 61  TSWFDAYS---ERHYLTQDPVVFLGLKQTQP------------------------IFWNK 93

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                  L     +      + KS         EL+ RE ECL W SEGKTS EIA ILG
Sbjct: 94  LDCDSPWLPSASYIFNSALQLIKSRPDLMKYLTELSDREKECLFWASEGKTSWEIATILG 153

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TVN ++  +  KT +K R+ AIA ++ + I+
Sbjct: 154 ISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGII 188


>gi|90023140|ref|YP_528967.1| LuxR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952740|gb|ABD82755.1| transcriptional regulator, LuxR family [Saccharophagus degradans
           2-40]
          Length = 247

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 19/187 (10%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITP---PAGMDN 128
            S++P +  +        ++  V++   +    +            + I         ++
Sbjct: 57  ISNYPDEWFKNYFEEGMQRHDPVVRYCMQNTSAIRWRQLMDLEHYVDAIGEKIMIRASES 116

Query: 129 RYC---SLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDV-----H 179
             C   S+        I +  L       L  R+   +    ++   +F+ Y        
Sbjct: 117 GLCDGLSIPIKAPSGEIAIFSLASNREEGLNQRINACLPFAQSFGTQVFECYSALMLKLA 176

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   LT RE E L W  EGKT+ EI+ IL +S  TV  +++S   K     R  A+A 
Sbjct: 177 QNKQTHLTAREKESLFWACEGKTTWEISKILDVSERTVIFHLSSATSKLGAVNRQHAVAK 236

Query: 240 AVRNNIV 246
           A+ + ++
Sbjct: 237 AILSGLI 243


>gi|241206852|ref|YP_002977948.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860742|gb|ACS58409.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 251

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 32/203 (15%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           +   A  + L+      +  +  +  +  PF     MA   KD Y+    R  ++    F
Sbjct: 70  QIYAAKKYALI------DPMVRYLAHAQRPFRWREAMAAFRKDAYHR---RMEQMMVDAF 120

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                      G+++ Y           +G + L  K   +      EI LL A     F
Sbjct: 121 GH---------GLEDGYI-FPIHGRSGILGSLSLAGKPIELSP---VEIALLEAVARKAF 167

Query: 174 ----------KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                     ++ +     D  LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  
Sbjct: 168 WRLLDLKGEAQALETVLPADTPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNG 227

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +  K   K R  A+A A R+ ++
Sbjct: 228 LQDKLKAKNRQHAVALAFRHGLI 250


>gi|148265144|ref|YP_001231850.1| regulatory protein, LuxR [Geobacter uraniireducens Rf4]
 gi|146398644|gb|ABQ27277.1| transcriptional regulator, LuxR family [Geobacter uraniireducens
           Rf4]
          Length = 250

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 83/208 (39%), Gaps = 16/208 (7%)

Query: 54  EYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA-----LSEKDKYYNVLQRPT 106
           + +G  H  + L + +          ++  +P + +         L +     N      
Sbjct: 41  DLIGFDHAVYGLAKLNHHGCITAYETLNFSYPAEWLDAYRTNNFHLLDPITTENFKNYSL 100

Query: 107 ELFCPVFHT-LPENITPPAGMD----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           + +   F+T   E     A +D    + Y     +  R    +  +    +   R+ L  
Sbjct: 101 QYWKDTFNTYDVEAKFLSAALDFRLVDGYAIGITNSFRTEGCIFSISGPIKKEPRNELV- 159

Query: 162 IGLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           + LLA +    F+   S +        +T RE E L WI +GK+S +I+ IL IS  TV 
Sbjct: 160 LNLLAPHLHQAFRQVLSVEKKGKISTTITIREREVLNWIKKGKSSWDISTILAISERTVK 219

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ ++MRK    +R  A+A A+   ++
Sbjct: 220 FHVDNVMRKLDAVSRIHAVAVALSVGLI 247


>gi|283785661|ref|YP_003365526.1| regulatory protein [Citrobacter rodentium ICC168]
 gi|282949115|emb|CBG88722.1| regulatory protein [Citrobacter rodentium ICC168]
          Length = 240

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 86/239 (35%), Gaps = 29/239 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +    + +   ++ L VR  + F   ++    S  +P   
Sbjct: 10  RRSMLLRFQEMASAKDVYSELQRQAQLLEFDYYALYVRHPVPFTRPRISFQTS--YPEAW 67

Query: 87  VRCMALSEKDKYYNVL--QRPTELFCP----------------VFHTLPENITPPAGMDN 128
           V             VL  +   +   P                  H L + +T    + N
Sbjct: 68  VSRYQAENYSAIDPVLKPENFIQGHLPWSDDLFNDAQTLWDAARAHGLRKGVTQCVMLPN 127

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELT 187
           R       V        +   +  + L+  + E +  L+  +  M  + ++ + K     
Sbjct: 128 RALGFLSVVRASLRSNPIDDDEVELRLQLLVRESLAALSRLEDEMVMAPEMRFSK----- 182

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 183 -REKEILKWTAEGKTSYEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGLI 240


>gi|240141366|ref|YP_002965846.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|240011343|gb|ACS42569.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
          Length = 165

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 3/163 (1%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D V    LS    +      P  +  P    +          D    ++         G 
Sbjct: 4   DPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDG--FTVPLATLEEERGG 61

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTS 203
           +    +   I   +   + LLA+Y        D     +   LT RE E L W++EGKT 
Sbjct: 62  LTFAGRQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKTD 121

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  ++
Sbjct: 122 WEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164


>gi|158317264|ref|YP_001509772.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112669|gb|ABW14866.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 250

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 2/155 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++        + R   +   V     +           Y   +     +   +  +   
Sbjct: 94  GIAAAGAIKRAVPRTRIVMLTVSDEESDLFEAIKAGAVGYLLKSIPPHEVADAVRAVHNG 153

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I         L+  +        D        LT RE+E L  ++EG+ + EIA  L
Sbjct: 154 QSLISPS--MASKLMVEFATMARGGEDRPRAHAPHLTARELEVLKLVAEGRANREIARKL 211

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 212 FISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 246


>gi|269960068|ref|ZP_06174445.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835367|gb|EEZ89449.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL---FPKGRIILR 156
            ++    +    +   +  +  P  G   R     +   +  I L       P    I  
Sbjct: 74  PLIAALQQSNHGIMALMDSHTHPDYGK--RLLLAGYHGDKKAIYLTSFGDRQPSSEEIDA 131

Query: 157 DRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             L    + + ++Y  +     +     + +LT RE E L W+  GK++ EI+ +L IS 
Sbjct: 132 LYLLTPHLYMASSYVCDRNIRVETLPAPESQLTTRECELLPWLKLGKSNWEISRLLNISE 191

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            TV  ++ +I RK     R+ A++ A+   
Sbjct: 192 RTVKYHLQNIYRKLDVHNRTHAVSKAIELG 221


>gi|59940063|gb|AAX12570.1| LuxR-type transcriptional regulator [Aeromonas popoffii]
          Length = 260

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTLVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      +    D L +   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAEQA-SSDLLLDSSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|158320230|ref|YP_001512737.1| two component LuxR family transcriptional regulator [Alkaliphilus
           oremlandii OhILAs]
 gi|158140429|gb|ABW18741.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           oremlandii OhILAs]
          Length = 224

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 22/183 (12%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITP 122
           +Q    +V  D        +   +  +    +    ++    FH   E            
Sbjct: 53  QQLSPDVVLLDISMPKQNGI---QTLRRLKDMDSTIKIIMLTFHEDREYLFETINLGANG 109

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
               D    SL   +  +  GL  ++P     L   L +       + N  +        
Sbjct: 110 YVLKDAESESLIKAIRDVYQGLNYIYPT----LATELVK-------EFNRREVKSQKRNN 158

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE E LT ++EG  + EI   L IS  TV N++++I +K     R+ A  YA +
Sbjct: 159 EDELTRREYEVLTLLAEGINNKEIGDCLFISEKTVKNHVSNIFKKINVNDRTQAAIYAYK 218

Query: 243 NNI 245
           +NI
Sbjct: 219 HNI 221


>gi|66277282|gb|AAY44572.1| LuxR-like protein [Aeromonas popoffii]
          Length = 260

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 88/237 (37%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +      +  +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTMVTDEDRLSELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      +    D L +   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAEQA-SSDLLLDSSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|145594985|ref|YP_001159282.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145304322|gb|ABP54904.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 220

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  S       V      L    F+             + +     
Sbjct: 52  DVVVMDVRMPVLDGIGASRLLAGAGVANPVKVLVVTTFNLDEYVYEALRAGASGFLLKDA 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A++  G+  +     ++  +   +  L+  Y A +  +       D  LT RE+E L 
Sbjct: 112 PPAQLLHGIRTVATGAALLAPEVTRQ--LVGRYAARIRPAEGS--SGDIPLTPRELEVLR 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I++G ++ EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R+ +V
Sbjct: 168 LIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRSGLV 218


>gi|194015561|ref|ZP_03054177.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
 gi|194012965|gb|EDW22531.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
           +   +  + +    +  ++   D   E     IV    P  ++  + +   +      ++
Sbjct: 15  FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70

Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             EL+                V H L          +    +L   V  +  G   L PK
Sbjct: 71  LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPK 130

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207
              +  + + E   LA    +    ++V+      L   T RE E L  +++GK++  I 
Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L IS  TV N++++I++K     R+ A+  A++N 
Sbjct: 188 ESLFISEKTVKNHVSNILQKMNVNNRTQAVVVAIKNG 224


>gi|26417542|gb|AAM75413.1| transcriptional regulator PpuR [Pseudomonas putida]
          Length = 238

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 16/231 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D L R+  ++    W   +  LT  +G S+FL+       +     ++ SD+P       
Sbjct: 7   DELLRLSEMERFEDWLAHLKILTRKLGYSNFLIGLKPAPTDANQQVLIYSDYPDAWRTRY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD----------NRYCSLTFDVARI 140
                     V+Q       P+     +N   P+  +           +  +L     R 
Sbjct: 67  DAESYAAVDPVVQHCLNANRPLLW-DRDNYRRPSESEFFEEAAAHGLQQGLALPLHGPRG 125

Query: 141 RIGLMLLFPKGRIILR-----DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             G++ L P            + L    LL  Y         +       LT RE E L 
Sbjct: 126 EAGMLCLKPSESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVHLTSREKEVLQ 185

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GKT+ EI++IL  + + ++ +  +I RK    +R  A+  A++   +
Sbjct: 186 WSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSI 236


>gi|325496964|gb|EGC94823.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii
           ECD227]
          Length = 240

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 89/243 (36%), Gaps = 37/243 (15%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL------------------- 68
           R  +L+R   +         +   T+ +   ++ L  R  +                   
Sbjct: 10  RRTMLSRFQEMASAEDVFQELQLQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVS 69

Query: 69  -FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +Q+    +I     P +  +   L   D  ++  Q   +      H L   +T    + 
Sbjct: 70  YYQQHNFLAIDPVLKPENFSQGH-LLWDDALFSEAQPLWDAAR--AHGLRRGVTQYLMLS 126

Query: 128 NRYCSL----TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           NR                I    L  K ++++R+ L    +LA  Q  M  +  + + K 
Sbjct: 127 NRALGFLSLSRMSAREGPIAHDELELKLQLLVRESLN---VLARLQHEMVMTPAMRFSK- 182

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
                RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA   
Sbjct: 183 -----RETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAAT 237

Query: 244 NIV 246
            I+
Sbjct: 238 GII 240


>gi|53716260|ref|YP_106160.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53722590|ref|YP_111575.1| N-acylhomoserine lactone-dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|67640560|ref|ZP_00439362.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei GB8 horse 4]
 gi|76818021|ref|YP_335776.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|124383134|ref|YP_001025820.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126442943|ref|YP_001063209.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 668]
 gi|126446904|ref|YP_001077903.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei NCTC 10247]
 gi|126457976|ref|YP_001076161.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106a]
 gi|134281979|ref|ZP_01768685.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 305]
 gi|167002385|ref|ZP_02268175.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei PRL-20]
 gi|167724282|ref|ZP_02407518.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei DM98]
 gi|167743255|ref|ZP_02416029.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 14]
 gi|167820433|ref|ZP_02452113.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 91]
 gi|167828803|ref|ZP_02460274.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 9]
 gi|167850259|ref|ZP_02475767.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei B7210]
 gi|167898862|ref|ZP_02486263.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 7894]
 gi|167907182|ref|ZP_02494387.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei NCTC 13177]
 gi|167915548|ref|ZP_02502639.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 112]
 gi|167923392|ref|ZP_02510483.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei BCC215]
 gi|217425142|ref|ZP_03456637.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 576]
 gi|226195987|ref|ZP_03791573.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pakistan 9]
 gi|237510506|ref|ZP_04523221.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313819|ref|ZP_04812836.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106b]
 gi|254176584|ref|ZP_04883242.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei ATCC 10399]
 gi|254185131|ref|ZP_04891720.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1655]
 gi|254186897|ref|ZP_04893413.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254194457|ref|ZP_04900889.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei S13]
 gi|254201028|ref|ZP_04907393.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei FMH]
 gi|254204993|ref|ZP_04911346.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei JHU]
 gi|254264301|ref|ZP_04955166.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1710a]
 gi|254301416|ref|ZP_04968860.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 406e]
 gi|254359112|ref|ZP_04975384.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei 2002721280]
 gi|52213004|emb|CAH39042.1| putative N-acylhomoserine lactone-dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|52422230|gb|AAU45800.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           23344]
 gi|76582494|gb|ABA51968.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710b]
 gi|126222434|gb|ABN85939.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 668]
 gi|126231744|gb|ABN95157.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106a]
 gi|126239758|gb|ABO02870.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei NCTC 10247]
 gi|134246508|gb|EBA46596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 305]
 gi|147748640|gb|EDK55715.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei FMH]
 gi|147754579|gb|EDK61643.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei JHU]
 gi|148028299|gb|EDK86259.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei 2002721280]
 gi|156105360|gb|ABU49179.1| BpsR3 [Burkholderia pseudomallei]
 gi|157810944|gb|EDO88114.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 406e]
 gi|157934581|gb|EDO90251.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697626|gb|EDP87596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei ATCC 10399]
 gi|169651208|gb|EDS83901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei S13]
 gi|184215723|gb|EDU12704.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1655]
 gi|217391747|gb|EEC31774.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 576]
 gi|225931880|gb|EEH27881.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pakistan 9]
 gi|235002711|gb|EEP52135.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238521303|gb|EEP84756.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei GB8 horse 4]
 gi|242137058|gb|EES23461.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106b]
 gi|243061949|gb|EES44135.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei PRL-20]
 gi|254215303|gb|EET04688.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1710a]
 gi|261827149|gb|ABM99449.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
          Length = 230

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 14/204 (6%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-- 113
           +G  H  +V            +VS  +P + V     ++     + + R    +   F  
Sbjct: 26  IGYQHHAIVELSGASHPASIDVVSLHYPSEWVEHYTRNDYFA-IDPVHRAAFRYSTPFSW 84

Query: 114 -----HTLPENITPPAGMDNRY---CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
                  L E        D       S+       R+ L+ L         D  W    L
Sbjct: 85  NDVATANLRERHLLMEAEDAGLDNGISIPLHQPLGRVLLVSLSGTAPTHDADAKWRNAYL 144

Query: 166 AAYQANM-FKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
              Q N+ F+S            LT RE  CLTW++ GK+S  IA +L IS+ TV+ +I 
Sbjct: 145 LGMQFNLQFQSMRTCRPIPPSVHLTDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIE 204

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           + M K  T++R+ A   A R  ++
Sbjct: 205 NAMEKLNTRSRTFAAVKATRQGLI 228


>gi|1730567|sp|P54303|PHZR_PSECL RecName: Full=Transcriptional activator protein phzR
 gi|496217|gb|AAA21841.1| positive regulatory protein [Pseudomonas chlororaphis subsp.
           aureofaciens]
          Length = 241

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 17/213 (7%)

Query: 49  MYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE------KDKYYNV 101
           + AL E       + +     F   +  + +  ++P D V+    +         K+  V
Sbjct: 31  LRALRELRFDFFRYGMCSVTPFMRPR--TYMYGNYPEDWVQRYQAANYAVIDPTVKHSKV 88

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
              P      +F   P+  +     + R+  +      + R+G++ L  K   I      
Sbjct: 89  SSSPILASNELFRGCPDLWSEANDSNLRHGLAQPSFNTQGRVGVLSLARKDNPISLQEFE 148

Query: 161 EIGLLA-AYQA------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
            + ++  A+ A      +  +S    +  D E +GRE + L W ++GKTS+EI VI+G+ 
Sbjct: 149 ALKVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADGKTSEEIGVIMGVC 208

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TVN +  +I RK     R  A  YAV    +
Sbjct: 209 TDTVNYHHRNIQRKIGASNRVQASRYAVAMGYI 241


>gi|83747411|ref|ZP_00944450.1| SolR [Ralstonia solanacearum UW551]
 gi|207744773|ref|YP_002261165.1| transcriptional activator protein solr [Ralstonia solanacearum
           IPO1609]
 gi|83725868|gb|EAP73007.1| SolR [Ralstonia solanacearum UW551]
 gi|206596183|emb|CAQ63110.1| transcriptional activator protein solr [Ralstonia solanacearum
           IPO1609]
          Length = 236

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190
           A    GL+ L      +    L  + +   + AN+  +         +    +  LT RE
Sbjct: 121 AHGAFGLLTLARHADPLTAAELGRLSIATHWLANLAHTLMSPFLVPKLVPESNAVLTARE 180

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 181 REVLCWTGEGKTAYEIGQILHISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236


>gi|254563872|ref|YP_003070967.1| N-acylhomoserine lactone LuxR family transcriptional regulator
           [Methylobacterium extorquens DM4]
 gi|254271150|emb|CAX27157.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens DM4]
          Length = 165

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 3/163 (1%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D V    LS    +      P  +  P    +          D    ++         G 
Sbjct: 4   DPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDG--FTVPLATLEEERGG 61

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTS 203
           +        I   +   + LLA+Y        D     +   LT RE E L W++EGKT 
Sbjct: 62  LTFAGPQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKTD 121

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  ++
Sbjct: 122 WEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164


>gi|317050861|ref|YP_004111977.1| regulatory protein LuxR [Desulfurispirillum indicum S5]
 gi|316945945|gb|ADU65421.1| regulatory protein LuxR [Desulfurispirillum indicum S5]
          Length = 243

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 95/239 (39%), Gaps = 17/239 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVG----ASHFLLVRWDLFQEQ-KLDSI 77
              +RSDLL     +   ++   +  M++L   +G     +  ++   +  +EQ    ++
Sbjct: 4   RELSRSDLLLACTAIQQALNIEDQDSMHSLLSTLGNCLDFTCAIICLVEFQEEQPLFQTL 63

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---------AGMDN 128
           V    P   +    + +  +   V Q+      P+  +  +N   P          G+ +
Sbjct: 64  VQHQCPEPWLETYVVRKLWRTDPVFQQVRRSPEPLRWSQTQNRHSPNPALLEASRHGLTD 123

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-FKSYDVHWGKDFELT 187
                     R  I L     +   I       + LLA    +   +        D  L+
Sbjct: 124 GISIGYGAGNRTLISLAGSRQQIHAISSLACRVLPLLAPLIHSASVRIAHRQDIPDTNLS 183

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L W +EGK+++EI++IL ISR+TV  ++  I +K     R  AIA A+R  ++
Sbjct: 184 ERERELLFWTAEGKSTEEISMILAISRDTVKYHLKRIYQKLDAVNRHHAIAKALRAGLI 242


>gi|237731962|ref|ZP_04562443.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2]
 gi|226907501|gb|EEH93419.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2]
          Length = 240

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+++    + L         +  + + + +P   V 
Sbjct: 10  RRSMLLRFQEMATAEDVYTELQQQTQHLEFDFYALCVRHPVPFTRPKTSLHTTYPKAWVA 69

Query: 89  CMALSEKDKYYNVL--QRPTELFCPVFHTLPENITPPAGMDNRY---CSLTFDVARIRIG 143
                       VL  +  ++   P   TL  +  P       +     +T  +      
Sbjct: 70  HYQSENYFAIDPVLKPENFSQGHLPWNDTLFRDAQPLWDAARNHGLRKGMTQCLMLPNRA 129

Query: 144 LMLLFPKGRIILRDRLW------EIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLT 195
           L  L      I   RL        + LL     ++      D+    +   + RE E L 
Sbjct: 130 LGFLSVSRASIRNSRLASDEVELRMQLLVRESLSVLTRLEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|115524334|ref|YP_781245.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115518281|gb|ABJ06265.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisA53]
          Length = 246

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 13/204 (6%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV--- 112
            G    ++      ++     +++  WP +  +    +   +   V++   + F P    
Sbjct: 41  YGFETIIVTGIPNHKQSFSQMVMAKRWPDEWFKLYTQNNYHRDDPVVRHLRKSFNPFEWS 100

Query: 113 -----FHTLPENITPPAGMDN----RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
                    P          +    R   +           + L      +       + 
Sbjct: 101 DAPYSRRNEPRAAAVMDRAADFRMSRGFIVPVHGLAGYEAAVSLGGDHIDLNPRSKPALH 160

Query: 164 LLAAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           L+A Y  +  +S           LT RE E L W ++GK++ EI  IL I++ T   ++A
Sbjct: 161 LMAMYAFDRIRSLVSPANDAPPRLTHRECETLNWTAQGKSAWEIGEILQIAQRTAEEHLA 220

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +  RK     ++ A+A A+R  ++
Sbjct: 221 TAARKLGAVNKTHAVAIAIRQKLI 244


>gi|159040348|ref|YP_001539601.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157919183|gb|ABW00611.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 219

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 4/175 (2%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           +    +V  D    ++  +  +       V      L    F+             + + 
Sbjct: 48  RLHPDVVVMDVRMPVLDGIGATRLLAGAGVANPVKVLVVTTFNLDEYVYEALRAGASGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A++  G+  +     ++  +   +  L+  Y A +  + D     +  LT RE+
Sbjct: 108 LKDAPPAQLLHGIRTVASGAALLAPEVTRQ--LVGRYAARIRPAEDS--SSEIPLTPREL 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I++G ++ EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R+ +V
Sbjct: 164 EVLRLIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRSGLV 218


>gi|218662896|ref|ZP_03518826.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 236

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 83/233 (35%), Gaps = 14/233 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDL 86
            +S L A +        +   +  +    G SH  L+     ++  L  + + S  P   
Sbjct: 3   RQSLLSAELAVAGTRGLFAQALGRVATAFGLSHATLMHAPSPEDLLLKPLLIESSLPPAY 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--------LTFDVA 138
           VR    +   +      R  E   P+   L +            C               
Sbjct: 63  VRDFDRANMMRGCPFGLRLRESAVPLAWHLNDARQWSGLSRRTACPDAAPRDTGGRCHAD 122

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAA-YQANMFKSYDVHWGKDFE----LTGREVEC 193
           +++     L        R    E G  A  Y      +Y+     +      L+ RE+E 
Sbjct: 123 QLQSTAAALVFLFLRRTRRTRPERGQRAGDYHPPALDAYNTVRRNEESAHNALSARELEV 182

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  ++
Sbjct: 183 VRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 235


>gi|117620077|ref|YP_855658.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561484|gb|ABK38432.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 264

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           DL+A+        +    +  L+  +G  +F L        Q+ D I+ +  P   V   
Sbjct: 16  DLIAQFETAADERTIVTLLRELSGRMGFDYFRLALIFPSTIQRPDVIIFNGCPQAWVDTY 75

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR-------------YCSLTFDV 137
             S       +++       P+      N         R               +L +  
Sbjct: 76  TSSGFFAIDPIVKCAMTKSTPILWADVVNDEERCDEQGREMMQLANEYGICDGITLPWHG 135

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----VHWGKDFELTGREVEC 193
           A   +GL+          +  L  +  ++    ++F++              L+ RE+E 
Sbjct: 136 ANGHVGLLSFITSTPRTQQQWLSAVPFISWLSMHIFEAVARVCLAGLSPHDALSLRELEV 195

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             W +EGK   +IA ILGI+  TV  ++ +++ K    ++S AI++A++  +V
Sbjct: 196 CRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGMV 248


>gi|152989200|ref|YP_001349253.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7]
 gi|150964358|gb|ABR86383.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7]
          Length = 239

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 21/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +      + W+  +  +   +G S  L        +   ++ +  ++P       
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVAR 139
             +   +    +   T+   P+F           H   E  +    +     ++    AR
Sbjct: 65  DKAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGAR 122

Query: 140 IRIGLMLLFPKGRIIL-RDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELTGREV 191
             +G + L  +       +R  E  L         A Q+    +++    K   LT RE 
Sbjct: 123 GELGALSLSVEAESRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVNKPVVLTSREK 182

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 183 EVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|302878668|ref|YP_003847232.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302581457|gb|ADL55468.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 243

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 18/185 (9%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNR-Y 130
           S++  D +      +                P+             E      G   +  
Sbjct: 56  SNYSADWLNKYTAEKLHHVDPTFSHCISKSTPLIWSPKIFSAQKQKEMYEEACGYGVKSG 115

Query: 131 CSLTFDVARIRIGLMLLFPK---GRIILRDRLWEIGLLAAYQANMFKS------YDVHWG 181
            +L    A+  +G++         +   RD    +  LA ++  + +S            
Sbjct: 116 VTLPIHGAKGELGIVCFVSDTKPDKRFHRDANHHLPELACFRDFILESSLQFMKPSRQVE 175

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               +T RE+ECL W + GK+S EI  IL  +  TVN + ++I RK +T +R  AI  A+
Sbjct: 176 NPISVTHRELECLKWSASGKSSWEIGHILNCTEATVNFHFSNIRRKFSTTSRQQAIVKAI 235

Query: 242 RNNIV 246
              ++
Sbjct: 236 SLGLI 240


>gi|188584215|ref|YP_001927660.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347713|gb|ACB83125.1| transcriptional regulator, LuxR family [Methylobacterium populi
           BJ001]
          Length = 243

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 3/164 (1%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           FD +    LS    +      P  L  P    +          D    ++         G
Sbjct: 81  FDPIVQATLSSTTGFRWSETDPAGLQDPKARQVMNEAVEFGLGDG--FTVPLATLEEERG 138

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKT 202
            +    +   I   +   + L+A+Y        D     +   LT RE E L W++EGKT
Sbjct: 139 GLTFAGRQLDISPGQRGMLTLIASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKT 198

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  ++
Sbjct: 199 DWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242


>gi|218672192|ref|ZP_03521861.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 233

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 35/236 (14%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDL 86
            +S L A +        +   +  ++   G SH  L+     ++  L  + + S  P   
Sbjct: 6   RQSLLSAELAVAGTRGLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKPLLIESSLPAAY 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-----------------------TPP 123
           VR    +   +      R  E   P+   L + +                        P 
Sbjct: 66  VRDFDRANMMRGCPFGLRLRESAVPLAWHLNDAVNGQAFPAELRALMLHHAIPAGVAMPT 125

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             +D R     F   R  +G   +     IIL         L AY         VH    
Sbjct: 126 IAVDGRRLVFWFCGERAALGQSEVNELAIIILH-------ALDAYNTVRRNEESVHNA-- 176

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A 
Sbjct: 177 --LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAK 230


>gi|304397142|ref|ZP_07379021.1| transcriptional regulator, LuxR family [Pantoea sp. aB]
 gi|304355291|gb|EFM19659.1| transcriptional regulator, LuxR family [Pantoea sp. aB]
          Length = 240

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 88/233 (37%), Gaps = 17/233 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHF--LLVRWDLFQEQKLDSIVSSDWPFDL 86
           RS++  +   L         +   TE +G  +F  L+     F   ++   + S +P   
Sbjct: 10  RSEVKQQFQALMACSDLKPLLQQFTESLGFDYFAFLIQHPVPFSRPRIH--LHSTYPKLW 67

Query: 87  VRCMA----------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           V+             LS   +    L    E+F    +   E             ++  +
Sbjct: 68  VKRYEKQNYYAVDPVLSLCQRPGRGLMWTEEMFAGAGNLWREAREYGLQSGFSCSAMAPN 127

Query: 137 VARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFK--SYDVHWGKDFELTGREVEC 193
            A   + +    P    +  + L  ++ LLA    +  +  S D       E + RE+E 
Sbjct: 128 RALGILSISSQQPIPLKLCHEELEVKLHLLAELSLDTLERFSDDAMMVLKKEFSQRELEI 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W  EGKT+ EI++IL IS +TVN +  ++ ++     ++    YA    ++
Sbjct: 188 LKWTGEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240


>gi|116495146|ref|YP_806880.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191638654|ref|YP_001987820.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus
           casei BL23]
 gi|227534839|ref|ZP_03964888.1| LuxR family response regulator [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239632026|ref|ZP_04675057.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066710|ref|YP_003788733.1| CitB family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116105296|gb|ABJ70438.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712956|emb|CAQ66962.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus
           casei BL23]
 gi|227187595|gb|EEI67662.1| LuxR family response regulator [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239526491|gb|EEQ65492.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439117|gb|ADK18883.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382696|gb|AEA54172.1| two component transcriptional regulator, LuxR family [Lactobacillus
           casei LC2W]
 gi|327385883|gb|AEA57357.1| two component transcriptional regulator, LuxR family [Lactobacillus
           casei BD-II]
          Length = 221

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + I +    E  L       M    +    +  ELT RE E L  I++GK++ EIA  L
Sbjct: 112 AKAIRQTAKGERVLEPQVTTKMMNRMNHPQPQYDELTNREREVLQLIAQGKSNQEIATEL 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I+ K   + R+ A  YA+++ +V
Sbjct: 172 FITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207


>gi|229552512|ref|ZP_04441237.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314064|gb|EEN80037.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 233

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 10/221 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R   + RMI +       M    L+ Y+G    L V       Q+   +   D P  ++ 
Sbjct: 6   RYQRMLRMIKVLIVDDHEMVRLGLSTYIGVQPDLEVVDQAENGQEGVEMALKDRPDIILM 65

Query: 89  CMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            + +  KD      +      +    +  +  ++      M+    S     A       
Sbjct: 66  DLVMPVKDGIEATKEILKAWPQARIIILTSFIDDAKVYPAMEAGAASYILKTATAE---- 121

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                 + I +    E  L       M    +    +  ELT RE E L  I++GK++ E
Sbjct: 122 ---EIAKAIRQTASGERVLEPQVTTKMMNRMNHPQPQYDELTNREREVLQLIAQGKSNQE 178

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L I+  TV  ++++I+ K   + R+ A  YA+++ +V
Sbjct: 179 IATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 219


>gi|167828172|ref|ZP_02459643.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
          Length = 210

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128
           ++ S++P         +        ++       PV  + P N +  A        G+ +
Sbjct: 29  LMVSNYPARWQERYIEARFANIDGAVKAALGSDLPVTWSAPANASKSAFWAEALSFGIAH 88

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183
            + S +   A   IG++ L      I     +    +  + AN+  +    +       D
Sbjct: 89  GWSSASR-GADGAIGVLTLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 147

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A   
Sbjct: 148 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 207

Query: 244 NIV 246
            ++
Sbjct: 208 GML 210


>gi|59940083|gb|AAX12580.1| LuxR-type transcriptional regulator [Aeromonas schubertii]
          Length = 260

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSAIL 243


>gi|217419193|ref|ZP_03450700.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226200253|ref|ZP_03795798.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|217398497|gb|EEC38512.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225927761|gb|EEH23803.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 236

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128
           ++ S++P         +        ++       PV  + P N +  A        G+ +
Sbjct: 55  LMVSNYPARWQERYIEARFANIDGAVKAALGSDLPVTWSAPANASKSAFWAEALSFGIAH 114

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183
            + S +   A   IG++ L      I     +    +  + AN+  +    +       D
Sbjct: 115 GWSSASR-GADGAIGVLTLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 173

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A   
Sbjct: 174 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 233

Query: 244 NIV 246
            ++
Sbjct: 234 GML 236


>gi|323528655|ref|YP_004230807.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385657|gb|ADX57747.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001]
          Length = 242

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 73/234 (31%), Gaps = 23/234 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++       W   +  L E  G    L+        +  D+ V S +  +  R    
Sbjct: 9   MAPLLDAADEAEWFSAVAGLAETWGFDRLLVAMLPRPTIRLEDAYVRSTYAPEWRRTYDE 68

Query: 93  SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132
                    +        P+                     H L   +T P    N+   
Sbjct: 69  QGLVHIDPTVAHCATRSTPLVWSPEIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 128

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           +   V               ++    L    ++   Q ++         K   LT RE E
Sbjct: 129 MMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLNTHAQTLLPK---LTPRERE 185

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 186 CLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 239


>gi|73672744|gb|AAZ80478.1| PpuR [Pseudomonas putida]
          Length = 238

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 16/231 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D L R+  ++    W   +  LT  +G S+FL+       +     ++ SD+P       
Sbjct: 7   DELLRLSEMERFEDWLAHLKILTRKLGYSNFLIGLKPAPTDANQQVLIYSDYPDAWRTRY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD----------NRYCSLTFDVARI 140
                     V+Q       P+     +N   P+  +           +  +L     R 
Sbjct: 67  DAESYAAVDPVVQHCLNANRPLLW-DRDNYRRPSESEFFEEAAAHGLQQGLALPLHGPRG 125

Query: 141 RIGLMLL-----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             G++ L      P+    + + L    LL  Y         +       LT RE E L 
Sbjct: 126 EAGMLCLKPFESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVHLTSREKEVLQ 185

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GKT+ EI++IL  + + ++ +  +I RK    +R  A+  A++   +
Sbjct: 186 WSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSI 236


>gi|303241719|ref|ZP_07328216.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302590720|gb|EFL60471.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 216

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 13/216 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++  D        +  + E +     ++ +    +E    +   S  P  ++  + +  
Sbjct: 5   RVLIADDHTMVRQGLKQILE-LEKDMAVIAQAPNGEEAIRLAKECS--PDVILMDINMPG 61

Query: 95  KDKYYNVLQR-----PTELFCPVFHTLPENITPPAGM-DNRYCSLTFDVARIRIGLMLLF 148
            +    + +      P+ +     H   E +     M    Y     D   +   +  + 
Sbjct: 62  MNGLQAIKEMKADNIPSRIIVLTIHEDREYLFKTLQMGAEGYVLKDADPVVLVEAIRSVN 121

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                I  +   E+      + N    +D    ++  LT REVE L  I+EG  + EIA 
Sbjct: 122 RGQSYIQANMTREL----VREFNKITLHDKSKSEESNLTAREVEVLELIAEGMINKEIAK 177

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L IS  TV N++++I RK     R+ A  YA ++N
Sbjct: 178 RLYISEKTVKNHVSNIFRKLNVSDRTQAAIYAFKHN 213


>gi|62180524|ref|YP_216941.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224583549|ref|YP_002637347.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62128157|gb|AAX65860.1| transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family)
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224468076|gb|ACN45906.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322715000|gb|EFZ06571.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 240

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 29/239 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +     +   +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 10  RRAMLLRFQEMAAAEDFYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V             VL +P        H   +++           +  F + R     ++
Sbjct: 68  VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124

Query: 147 L-------------------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           L                   F    + LR +L     L+A         D+    +   +
Sbjct: 125 LPNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSAL---TRFEDDMVMAPEMRFS 181

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 182 KREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 245

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 93/234 (39%), Gaps = 19/234 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  L   +  L        R+ ++++Y+  S + ++  +  QE    ++V    P  +V 
Sbjct: 14  RGVLSMPLTILVVDDDLGTRL-SISDYLELSGYSVITANDGQEAL--TMVEVYHPDLIVT 70

Query: 89  CMALSEKDKYY---NVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARI 140
            + +   + Y     V Q+P     PV          E I       + Y    F++  +
Sbjct: 71  DIVMPRMNGYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEEL 130

Query: 141 RIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDF---ELTGREVE 192
              +  L  + +II  +  +         L +       S   H  K      LT RE E
Sbjct: 131 AAAIHNLLERSQIIQSEYRFSQKDNSGSPLPSKIVESHHSVFTHVEKSHLLSSLTPREQE 190

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G ++ EI   L +S  TV  Y++S++RKT T  R+  + +A+ + +V
Sbjct: 191 VLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHGLV 244


>gi|221633642|ref|YP_002522868.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
 gi|221156159|gb|ACM05286.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
          Length = 245

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 9/181 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNR 129
           ++    ++  D     +  + ++   K          +     H   E +        + 
Sbjct: 46  DELSPDVILVDLSLPGMNGLEVARALKRRQPQ---AGVIILTMHQDDEQLFNAIRAGASA 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS----YDVHWGKDFE 185
           YC+   +  ++ I ++    +G  ++ + +     +A+   + F+          G    
Sbjct: 103 YCTKDIEPEQL-IDVITRVARGEYLINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFSP 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ EIA  L IS  TV N+I SI+RK A   R+ A+ YA+R+  
Sbjct: 162 LTPREIEILDCVARGYSNKEIAQALNISDQTVKNHITSILRKLAVNDRTQAVIYALRHGW 221

Query: 246 V 246
           +
Sbjct: 222 I 222


>gi|62822972|gb|AAY15207.1| transcriptional activator PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 17/213 (7%)

Query: 49  MYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           + AL E       + +     F   +  + +  ++P D V+    +        ++    
Sbjct: 31  LRALRELRFDFFAYGMCSVTPFMRPR--TYMYGNYPEDWVQRYQAANYAVIDPTVKHSKV 88

Query: 108 LFCPVF---HTLPENITPPAGMDNRYCSLTFDV----ARIRIGLMLLFPKGRII------ 154
              P+              +   + +           A+ R+G++ L  K   I      
Sbjct: 89  SSAPILWSNELFRGCADLWSEAKDSHLCHGLAQPSFNAQGRVGVLSLARKNNPISLQEFE 148

Query: 155 -LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
            L+         A  + +  +S    +    E +GRE + L W ++GKTS+EI VI+G+ 
Sbjct: 149 ALKPVTRAFAAAAHEKISELESDVRVFNTGVEFSGRECDVLRWTADGKTSEEIGVIMGVC 208

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TVN +  +I RK     R  A++YAV    +
Sbjct: 209 TDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|307727058|ref|YP_003910271.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587583|gb|ADN60980.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003]
          Length = 242

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 72/234 (30%), Gaps = 23/234 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++       W   +  L E  G    L+        +  D+ + S +     R    
Sbjct: 9   MAPLLNAADEAEWFSAVAKLAETWGFDRLLIAMLPRPTMRLEDAYIRSTYAPAWRRTYDE 68

Query: 93  SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132
                    +        P+                     H L   +T P    N+   
Sbjct: 69  QGLVHIDPTVAHCATRSTPLVWSPEIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 128

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           +   V               ++    L    ++   Q ++         K   LT RE E
Sbjct: 129 MMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLHTHAQSLLPK---LTPRERE 185

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 186 CLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 239


>gi|156933489|ref|YP_001437405.1| DNA-binding transcriptional activator SdiA [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156531743|gb|ABU76569.1| hypothetical protein ESA_01307 [Cronobacter sakazakii ATCC BAA-894]
          Length = 241

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R ++  R   +  +      +   T+ +   +F L         +    + + +P   + 
Sbjct: 10  RREMTTRFQEIQDSSDIYSLLKTETQNMEYDYFALCVRHPVPFTRPKLTLHTTYPEAWLE 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPV------FHTLPE---NITPPAGMDNRY--CSLTFDV 137
                       VL+    L  P+      F    E   N     G+      C +  + 
Sbjct: 70  HYQAENYYVIDPVLKPANYLVGPLSWNDALFAGAAEELWNAARDHGLVKGVTQCVIAPNR 129

Query: 138 ARIRIGLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
           A+  + +    P+G  +  D   L    L+      M +  D      + +L+ RE E L
Sbjct: 130 AQGFLSVSGTSPRGHSMADDELALRLQHLVEQSLVTMMRLEDPAATVLEMKLSKREKEIL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 QWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAAIGLI 241


>gi|199597190|ref|ZP_03210622.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258508705|ref|YP_003171456.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|199591994|gb|EDZ00069.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257148632|emb|CAR87605.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259650011|dbj|BAI42173.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 221

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + I +    E  L       M    +    +  ELT RE E L  I++GK++ EIA  L
Sbjct: 112 AKAIRQTASGERVLEPQVTTKMMNRMNHPQSQYDELTNREREVLQLIAQGKSNQEIATEL 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I+ K   + R+ A  YA+++ +V
Sbjct: 172 FITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207


>gi|16765288|ref|NP_460903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167993519|ref|ZP_02574613.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|2992525|gb|AAC08299.1| SdiA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420484|gb|AAL20862.1| transcriptional regulator of ftsQAZ gene cluster [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|205328435|gb|EDZ15199.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247116|emb|CBG24939.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993936|gb|ACY88821.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158464|emb|CBW17974.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912940|dbj|BAJ36914.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224593|gb|EFX49656.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional
           activator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323130228|gb|ADX17658.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332988839|gb|AEF07822.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 240

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 29/239 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V             VL +P        H   +++           +  F + R     ++
Sbjct: 68  VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAKAMWDAAQRFGLRRGVTQCVM 124

Query: 147 L-------------------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           L                   F    + LR +L     L+A         D+    +   +
Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSAL---TRFEDDMVMAPEMRFS 181

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 182 KREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|300702552|ref|YP_003744152.1| transcriptional activator protein solr [Ralstonia solanacearum
           CFBP2957]
 gi|299070213|emb|CBJ41504.1| Transcriptional activator protein solR [Ralstonia solanacearum
           CFBP2957]
          Length = 236

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190
           A    GL+ L      +    L ++ +   + AN+  +         +    +  LT RE
Sbjct: 121 AHGAFGLLTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAVLTARE 180

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 181 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236


>gi|167552822|ref|ZP_02346573.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322659|gb|EDZ10498.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 240

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 23/236 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V             VL +P        H   +++           +  F + R     ++
Sbjct: 68  VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124

Query: 147 LFPKGR---IILRDRLW-----------EIGLLAAYQANMFKS--YDVHWGKDFELTGRE 190
           L  +      I R  L             + LLA    +       D+    +   + RE
Sbjct: 125 LPNRALGFLSISRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKRE 184

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|75674825|ref|YP_317246.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74419695|gb|ABA03894.1| Transcriptional regulatory protein, LuxR family [Nitrobacter
           winogradskyi Nb-255]
          Length = 241

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 24/234 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---LFQEQKLDSIVSSDWPFDLVR 88
            +AR+            +  +   +G SH L        +  EQ++ ++V   WP     
Sbjct: 12  FIARVDKASTPAEIADAVVDVARPLGFSHVLAGIIPIPGMTAEQQISNVVLHRWPKAWSE 71

Query: 89  CM----------------ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
                               +E   +  +         P    + E      G       
Sbjct: 72  RYFTKGYLFDDPTIQRVNTSTEPFLWSELEPTYRNTPAPT-RVMGEAREFNLGCGFTVPM 130

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           +T +       L     +   ILR +L  I + A  +A        +      LT RE++
Sbjct: 131 ITLNGQTAGFSLASERAEVPSILRGQLQLIAMYAFARA----LGQKYKPAPVNLTPREMD 186

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W++EGK+  EI+VIL +S + V+     +  K     R+  +A A+R+N++
Sbjct: 187 ILQWMAEGKSDWEISVILKVSEHLVDKIARQLRAKLNATNRTQTVAVALRHNLI 240


>gi|269837643|ref|YP_003319871.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786906|gb|ACZ39049.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 234

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLL 147
            +S  +    + +R  +    V     ++    + +    + YC+   D A + + ++  
Sbjct: 61  GMSGLELCRVLKRRHPQAAIVVLTMHEDDEQLFSSIRVGASAYCTKDIDPAEL-VTVIRR 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKS----YDVHWGKDFELTGREVECLTWISEGKTS 203
             +G  ++ + +     +A+   + F+      +V  G    LT REVE L  ++ G ++
Sbjct: 120 VARGEYLINENVLSRPFVASRVLDQFRELAQIDEVSSGVFSPLTPREVEILDCVARGNSN 179

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA +L IS  TV N+I SI+RK A   R+ A+ YA+R+  +
Sbjct: 180 KEIARLLNISDQTVKNHITSILRKLAVNDRTQAVIYALRHGWI 222


>gi|59940039|gb|AAX12558.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTLVTDGNRLAEVIGRFTLGMGYDYYRFALILPTSMQRRKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
            ++       ++Q       P++          L E      G+   +      S     
Sbjct: 68  TVNNMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--------FELTGR 189
           A    G++    + R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITRERA-SSDLLLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEALTER 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W S+GKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFWASDGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKRVSSGIL 243


>gi|237807075|ref|YP_002891515.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187]
 gi|237499336|gb|ACQ91929.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187]
          Length = 254

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 18/230 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + +   R+           ++  L       ++ L        Q+ D  + +  P +  
Sbjct: 7   PQEEQHFRIQNCKTPQMLANQLTILCAANNFEYYQLCLTLRRGLQQTDLTLLTQTPDNWA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVF----------HTLPENITPPAGMDNRYCSLTFDV 137
              A +   +  ++ QR      P+F          + LP +     GM+    ++    
Sbjct: 67  EHYAKNNTIQNDSLYQRAQTQSRPLFWQSEAKPEHENFLPMDCWRQFGMEEG-IAVPLHG 125

Query: 138 ARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
                G   L    +  +R +  + +  L        ++  +   +   L+GRE ECL W
Sbjct: 126 PAGFCGYFALSRHKKEPIRLQDFFHLSYLGHILQE--QAIQLFSPEQSNLSGREKECLFW 183

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +SEGKTS EIA ILGI+  TVN ++ + +RK+  K R   +A     NI+
Sbjct: 184 VSEGKTSWEIAQILGITERTVNFHLNNAIRKSGCKNRYQTVAK----NII 229


>gi|157693950|ref|YP_001488412.1| response regulator DegU [Bacillus pumilus SAFR-032]
 gi|157682708|gb|ABV63852.1| response regulator DegU [Bacillus pumilus SAFR-032]
          Length = 229

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
           +   +  + +    +  ++   D   E     IV    P  ++  + +   +      ++
Sbjct: 15  FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70

Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             EL+                V H L          +    +L   V  +  G   L PK
Sbjct: 71  LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPK 130

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207
              +  + + E   LA    +    ++V+      L   T RE E L  +++GK++  I 
Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L IS  TV N++++I++K     R+ A+  A++N 
Sbjct: 188 ESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNG 224


>gi|49082134|gb|AAT50467.1| PA1430 [synthetic construct]
          Length = 240

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 21/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +      + W+  +  +   +G S  L        +   ++ +  ++P       
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVAR 139
             +   +    +   T+   P+F           H   E  +    +     ++    AR
Sbjct: 65  DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGAR 122

Query: 140 IRIGLMLLFPKGR------IILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREV 191
             +G + L  +          +   L  + +L  Y        +++    K   LT RE 
Sbjct: 123 GELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREK 182

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 183 EVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|193890916|gb|ACF28617.1| quorum sensing regulator [Mesorhizobium tianshanense]
          Length = 275

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 84/245 (34%), Gaps = 17/245 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDS 76
             + ++ +      L  +  L         +  + E  G     +L       +  + + 
Sbjct: 27  SEASIAAMSGLDATLEEIGQLGDAEKIPALLQRIAERYGLKTVAYLGTGTLDRRVPRQEP 86

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV----FHTLPENITPPAGMDNRY-- 130
            ++  +P + V              +Q       P+    F     ++    G  + +  
Sbjct: 87  FIAVTYPPEWVERYRARGYINIDPAIQIGLRRLLPIDWDEFGKAEGDLRQFFGEASEFGL 146

Query: 131 --CSLTFDVARIRIGLMLLFPKGRIILRDRLW-------EIGLLAAYQANMFKSYDVHWG 181
               ++F V        L         R+  W          ++AA+        D  + 
Sbjct: 147 GLRGISFPVHGCGGDRALFSVTADFSKREWHWARRTAFRHFPIIAAHLHEAVLRTDGVFR 206

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE+ECL W SEGKT  E  VILG+S +TV  Y+ S   K    + + A + A 
Sbjct: 207 SQPRLSPRELECLRWTSEGKTVWECGVILGLSPHTVRCYLESARHKLGASSNTHAASLAT 266

Query: 242 RNNIV 246
           ++ ++
Sbjct: 267 KSGLL 271


>gi|111221195|ref|YP_711989.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111148727|emb|CAJ60403.1| Putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 213

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 2/155 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++        + R   +   V     +           Y   +     +   +  +   
Sbjct: 57  GIAAAGAIKRAVPRTRIVMLTVSDEESDLFEAIKAGAVGYLLKSIPPHEVADAVRAVHNG 116

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I         L+  +      + D        LT RE+E L  ++EG+ + EIA  L
Sbjct: 117 QSLISPS--MASKLMVEFATMARGTEDRPRVNAPHLTARELEVLKLVAEGRANREIARKL 174

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 175 FISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 209


>gi|86739750|ref|YP_480150.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86566612|gb|ABD10421.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 238

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 2/155 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++        + R   +   V     +           Y   +     +   +  +   
Sbjct: 82  GIAAAGAIKRAVPRTRIVMLTVSDEESDLFEAIKAGAVGYLLKSIPPHEVADAVRAVHNG 141

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I         L+  +      + D        LT RE+E L  ++EG+ + EIA  L
Sbjct: 142 QSLISPS--MASKLMVEFATMARGTEDRPRAHAPHLTARELEVLKLVAEGRANREIARKL 199

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 200 FISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 234


>gi|45259344|emb|CAF32980.1| uR protein [Pseudomonas putida]
          Length = 238

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 84/231 (36%), Gaps = 16/231 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D L R+  ++    W   +  LT  +G S+FL+       +   + ++ SD+P       
Sbjct: 7   DELLRLNEMERFEDWLAHLKILTRKLGYSNFLIGLKPAPTDANQEVLIYSDYPDAWRTRY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD----------NRYCSLTFDVARI 140
                     V+Q        +     +N   P+  +           +  +L     R 
Sbjct: 67  DAESYAAVDPVVQHCLNANRALLW-DRDNYRRPSESEFFEEAAAHGLQQGLALPLHGPRG 125

Query: 141 RIGLMLLFPKGRIILR-----DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             G++ L P            + L    LL  Y         +       LT RE E L 
Sbjct: 126 EAGMLCLKPSESGPQATATMIESLPTATLLRDYAMEGMLKARIECSTPVHLTSREKEVLQ 185

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GKT+ EI++IL  + + ++ +  +I RK    +R  A+  A++   +
Sbjct: 186 WSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSI 236


>gi|76819232|ref|YP_337020.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1710b]
 gi|76583705|gb|ABA53179.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710b]
          Length = 394

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 19/231 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
              ++   C  S   +       +G  +F   R  +         +   +P +       
Sbjct: 166 FNEILNATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPAEWRLRYDA 223

Query: 93  SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143
           ++      V+Q       P ++H      +    M +           S         I 
Sbjct: 224 ADYLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 283

Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
           ++ +            ILR       L +   A M +  D    +    +LT RE E L 
Sbjct: 284 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 343

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 344 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 394


>gi|320010128|gb|ADW04978.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 219

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 6/172 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLT 134
            +V  D    ++  +A +        +  P ++       L E +        + +    
Sbjct: 52  DVVVMDIRMPVLDGIAATRLLA-GAGVPHPVKVLVVTTFNLDEYVYEALRAGASGFLLKD 110

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               R+  G+  +     ++  D   +  L+  Y A +  +       D  LT RE+E L
Sbjct: 111 APPDRLLHGIRTVAAGAALLDPDVTRQ--LVGRYAARIRPTGGTD--PDIPLTPRELEVL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I+EG ++ EIA  L ISR TV  +++ I+ K   + R  A+ YA R  +V
Sbjct: 167 RLIAEGLSNSEIAASLVISRETVKTFVSRILTKLGLRDRVQAVVYAYRQGLV 218


>gi|258539885|ref|YP_003174384.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|257151561|emb|CAR90533.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 221

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + I +    E  L       M    +    +  ELT RE E L  I++GK++ EIA  L
Sbjct: 112 AKAIRQTASGERVLEPQVTTKMMNRMNHPQPQYDELTNREREVLQLIAQGKSNQEIATEL 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I+ K   + R+ A  YA+++ +V
Sbjct: 172 FITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207


>gi|328555254|gb|AEB25746.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
          Length = 229

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
           +   +  + +    +  ++   D   E     IV    P  ++  + +   +      ++
Sbjct: 15  FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70

Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             EL+                V H L          +    +L   V  +  G   L PK
Sbjct: 71  LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK 130

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207
              +  + + E   LA    +    ++V+      L   T RE E L  +++GK++  I 
Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L IS  TV N++++I++K     R+ A+  A++N 
Sbjct: 188 ESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNG 224


>gi|15596627|ref|NP_250121.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAO1]
 gi|116049375|ref|YP_791822.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892698|ref|YP_002441567.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58]
 gi|254234529|ref|ZP_04927852.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719]
 gi|254239780|ref|ZP_04933102.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192]
 gi|313106426|ref|ZP_07792658.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016]
 gi|125980|sp|P25084|LASR_PSEAE RecName: Full=Transcriptional activator protein lasR
 gi|9947379|gb|AAG04819.1|AE004572_7 transcriptional regulator LasR [Pseudomonas aeruginosa PAO1]
 gi|151326|gb|AAA25874.1| transcriptional activator LasR [Pseudomonas aeruginosa PAO1]
 gi|115584596|gb|ABJ10611.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166460|gb|EAZ51971.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719]
 gi|126193158|gb|EAZ57221.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192]
 gi|156106986|gb|ABU49653.1| LasR [Pseudomonas sp. M18]
 gi|218772926|emb|CAW28738.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58]
 gi|310879160|gb|EFQ37754.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016]
          Length = 239

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 84/235 (35%), Gaps = 21/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +      + W+  +  +   +G S  L        +   ++ +  ++P       
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVAR 139
             +   +    +   T+   P+F           H   E  +    +     ++    AR
Sbjct: 65  DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGAR 122

Query: 140 IRIGLMLLFPKGR------IILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFELTGREV 191
             +G + L  +          +   L  + +L  Y  Q+    +++    K   LT RE 
Sbjct: 123 GELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREK 182

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 183 EVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|541657|dbj|BAA06489.1| LasR [Pseudomonas aeruginosa]
          Length = 239

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 84/235 (35%), Gaps = 21/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +      + W+  +  +   +G S  L        +   ++ +  ++P       
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVAR 139
             +   +    +   T+   P+F           H   E  +    +     ++    AR
Sbjct: 65  DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGAR 122

Query: 140 IRIGLMLLFPKGR------IILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFELTGREV 191
             +G + L  +          +   L  + +L  Y  Q+    +++    K   LT RE 
Sbjct: 123 GELGALSLSVEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREK 182

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 183 EVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|205352355|ref|YP_002226156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272136|emb|CAR36989.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627405|gb|EGE33748.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 240

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 31/240 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH-------------------TLPENITPPAGMD 127
           V             VL +P        H                    L   +T    + 
Sbjct: 68  VTHYQSENYFAIDPVL-KPENFRQGHLHWDDVLFHEEQAMWDAAQRFGLRRGVTQCVMLP 126

Query: 128 NRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           NR    L+F  + +R            +       +  L  ++ +M  + ++ + K    
Sbjct: 127 NRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSK---- 182

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 183 --REKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|168239186|ref|ZP_02664244.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735895|ref|YP_002114983.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|198243442|ref|YP_002215136.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|194711397|gb|ACF90618.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288026|gb|EDY27413.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937958|gb|ACH75291.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|322616943|gb|EFY13851.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618183|gb|EFY15075.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625853|gb|EFY22672.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626305|gb|EFY23115.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632720|gb|EFY29465.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322639062|gb|EFY35755.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640503|gb|EFY37156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322645988|gb|EFY42505.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649891|gb|EFY46312.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655499|gb|EFY51807.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660277|gb|EFY56515.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662958|gb|EFY59165.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668143|gb|EFY64302.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674097|gb|EFY70191.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675550|gb|EFY71624.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322683038|gb|EFY79054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686732|gb|EFY82710.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323195379|gb|EFZ80559.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199270|gb|EFZ84365.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204435|gb|EFZ89441.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207525|gb|EFZ92473.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211850|gb|EFZ96681.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217510|gb|EGA02229.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219586|gb|EGA04070.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323223588|gb|EGA07903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231532|gb|EGA15645.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235975|gb|EGA20054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240545|gb|EGA24588.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245437|gb|EGA29437.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323250207|gb|EGA34099.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253982|gb|EGA37806.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255491|gb|EGA39252.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262088|gb|EGA45651.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266211|gb|EGA49701.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270680|gb|EGA54121.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326622885|gb|EGE29230.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 240

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 29/239 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V             VL +P        H   +++           +  F + R     ++
Sbjct: 68  VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDMLFHEAQAMWDAAQRFGLRRGVTQCVM 124

Query: 147 L-------------------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           L                   F    + LR +L     L+A         D+    +   +
Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSAL---TRFEDDMVMAPEMRFS 181

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 182 KREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|161613489|ref|YP_001587454.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168244797|ref|ZP_02669729.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168462512|ref|ZP_02696443.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822990|ref|ZP_02834990.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194445102|ref|YP_002041215.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448751|ref|YP_002046001.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197250905|ref|YP_002146073.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|204931037|ref|ZP_03221863.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|207856536|ref|YP_002243187.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|238912477|ref|ZP_04656314.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|161362853|gb|ABX66621.1| hypothetical protein SPAB_01206 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403765|gb|ACF63987.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407055|gb|ACF67274.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195634505|gb|EDX52857.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197214608|gb|ACH52005.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|204320081|gb|EDZ05286.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205336361|gb|EDZ23125.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340659|gb|EDZ27423.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|206708339|emb|CAR32642.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|320085432|emb|CBY95213.1| Regulatory protein sdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 240

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 31/240 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH-------------------TLPENITPPAGMD 127
           V             VL +P        H                    L   +T    + 
Sbjct: 68  VTHYQSENYFAIDPVL-KPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLP 126

Query: 128 NRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           NR    L+F  + +R            +       +  L  ++ +M  + ++ + K    
Sbjct: 127 NRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSK---- 182

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 183 --REKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|56413135|ref|YP_150210.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362061|ref|YP_002141698.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56127392|gb|AAV76898.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093538|emb|CAR59000.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 240

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 31/240 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPQAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH-------------------TLPENITPPAGMD 127
           V             VL +P        H                    L   +T    + 
Sbjct: 68  VTHYQSENYFAIDPVL-KPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLP 126

Query: 128 NRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           NR    L+F  + +R            +       +  L  ++ +M  + ++ + K    
Sbjct: 127 NRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSK---- 182

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 183 --REKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|59940059|gb|AAX12568.1| LuxR-type transcriptional regulator [Aeromonas allosaccharophila]
          Length = 260

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TV  ++  + RKT + TR  AIA  V + I+
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVIYHLNQVTRKTGSMTRYQAIAKGVSSGIL 243


>gi|53722204|ref|YP_111189.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|76817623|ref|YP_335301.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei 1710b]
 gi|126444655|ref|YP_001062648.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|52212618|emb|CAH38644.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|76582096|gb|ABA51570.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei 1710b]
 gi|126224146|gb|ABN87651.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
          Length = 234

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128
           ++ S++P         +        ++       PV  + P N +  A        G+ +
Sbjct: 53  LMVSNYPARWQERYIEARFANIDGAVKAALGSDRPVTWSAPANASKSAFWAEALSFGIAH 112

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183
            + S +   A   IG++ L      I     +    +  + AN+  +    +       D
Sbjct: 113 GWSSASR-GADGAIGVLTLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 171

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A   
Sbjct: 172 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 231

Query: 244 NIV 246
            ++
Sbjct: 232 GML 234


>gi|189218591|ref|YP_001939232.1| LuxR family transcriptional regulator [Methylacidiphilum infernorum
           V4]
 gi|189185449|gb|ACD82634.1| Transcriptional regulator LuxR family [Methylacidiphilum infernorum
           V4]
          Length = 251

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 46/99 (46%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            P+   IL    + + L     ++  +           LT RE+E L WI +GKT+ EI+
Sbjct: 151 SPRHETILNGLKYPLHLALLNCSHPQEVEKPAKESPQALTARELEILKWIMDGKTNWEIS 210

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IL IS  TV  ++ +I  K   + R  A+A A    ++
Sbjct: 211 CILKISEATVKFHLKNIFLKLDVQNRCQAVATAFHRRLL 249


>gi|16080602|ref|NP_391429.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|154687664|ref|YP_001422825.1| DegU [Bacillus amyloliquefaciens FZB42]
 gi|221311500|ref|ZP_03593347.1| DegU [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315827|ref|ZP_03597632.1| DegU [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320742|ref|ZP_03602036.1| DegU [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221325027|ref|ZP_03606321.1| DegU [Bacillus subtilis subsp. subtilis str. SMY]
 gi|296330243|ref|ZP_06872724.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305676152|ref|YP_003867824.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|308175281|ref|YP_003921986.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|321313096|ref|YP_004205383.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|118438|sp|P13800|DEGU_BACSU RecName: Full=Transcriptional regulatory protein degU; AltName:
           Full=Protease production enhancer protein
 gi|143089|gb|AAA22545.1| iep protein [Bacillus subtilis]
 gi|143499|gb|AAA22733.1| degU protein (gtg start codon) [Bacillus subtilis]
 gi|143502|gb|AAA22735.1| protein kinase (put.); putative [Bacillus subtilis]
 gi|1762330|gb|AAC44938.1| transcriptional regulator of degradation enzymes [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|2636075|emb|CAB15566.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|126363001|emb|CAM35818.1| two-component response regulator DegU [Bacillus amyloliquefaciens
           FZB42]
 gi|154353515|gb|ABS75594.1| DegU [Bacillus amyloliquefaciens FZB42]
 gi|206967377|gb|ACI22669.1| two-component response regulator DegU [Bacillus subtilis]
 gi|219937642|emb|CAJ97429.1| transcriptional regulatory protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152511|gb|EFG93379.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414396|gb|ADM39515.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|307608145|emb|CBI44516.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|320019370|gb|ADV94356.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|328913615|gb|AEB65211.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens
           LL3]
          Length = 229

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
           +   +  + +    +  ++   D   E     IV    P  ++  + +   +      ++
Sbjct: 15  FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70

Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             EL+                V H L          +    +L   V  +  G   L PK
Sbjct: 71  LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK 130

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207
              +  + + E   LA    +    ++V+      L   T RE E L  +++GK++  I 
Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L IS  TV N++++I++K     R+ A+  A++N 
Sbjct: 188 ESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNG 224


>gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 245

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 19/234 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  L   +  L        R+ ++++Y+  S + ++  +  QE    ++V +  P  +V 
Sbjct: 14  RGVLSMPLTILVVDDDLGTRL-SISDYLELSGYSVITANDGQEAL--TMVEAYHPDLIVT 70

Query: 89  CMALSEKDKYY---NVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARI 140
            + +   + Y     V Q+P     PV          E I       + Y    F++  +
Sbjct: 71  DIVMPRMNGYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEEL 130

Query: 141 RIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDF---ELTGREVE 192
              +  L  + +II  +  +         L +       S   H  K      LT RE E
Sbjct: 131 AAAIRNLLERSQIIQSEYRFSQKDNLGSPLPSKIVESHHSVFTHVEKSHLLSSLTPREQE 190

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G ++ EI   L +S  TV  Y++S++RKT T  R+  + +A+ + +V
Sbjct: 191 VLEMLTHGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHGLV 244


>gi|167839810|ref|ZP_02466494.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 236

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128
           ++ S++P         +        ++       PV  + P N +  A        G+ +
Sbjct: 55  LMVSNYPARWQERYIEARFANVDGAVKAALGSDRPVTWSAPANASKSAFWAEALSFGIAH 114

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183
            + S +   A   IG++ L      I     +    +  + AN+  +    +       D
Sbjct: 115 GWSSASR-GADGAIGVLSLSRTQGPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 173

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A   
Sbjct: 174 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 233

Query: 244 NIV 246
            ++
Sbjct: 234 GML 236


>gi|331696989|ref|YP_004333228.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951678|gb|AEA25375.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 237

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 11/211 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +   ++  + +    E VGA+           E+    +V  D     +R       +  
Sbjct: 22  VREGLTMVLGLMPELEVVGAASDG-AEAVALAERLDPDVVLMD-----LRMPRCDGVEAT 75

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
             + +R   +   V  T  ++ +    +      Y +       IR  L  +      I 
Sbjct: 76  RLLRERRPGVRVVVLTTYSDDRSVLDALRAGARGYLTKDAGGPEIREALRRVLDDRAAID 135

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                +  LL A      +   V   +   LT RE E LT ++EG ++ EIA  L +S  
Sbjct: 136 PA--VQHHLLEALAGGRPEPVPVAPQRPAGLTAREAEVLTLVAEGLSNAEIARRLVVSEG 193

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +++  ++ K   + R+ A+A+A RN +V
Sbjct: 194 TVKSHMNHLLAKIDARDRAQAVAFAYRNGLV 224


>gi|187918993|ref|YP_001888024.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717431|gb|ACD18654.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 234

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 19/232 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++       W   +  L E  G    L+        +  D+ V S +     R    
Sbjct: 1   MAPLLDAADEAEWFGAIAGLAETWGFDKLLIAMLPRPTIRLEDAYVRSTYSPTWRRTYDE 60

Query: 93  SEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
                    +        P      +F T P+                +L         G
Sbjct: 61  QGLVHIDPTVAHCATRATPLIWSPDIFKTAPQLSMYEEARAHGLRSGITLPIHGPNQEAG 120

Query: 144 LMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHWGKDFE-----LTGREVECL 194
           +M  F        +    I +    L   +  +  +   H     +     LT RE ECL
Sbjct: 121 MM-CFVNDNNPNDEFWRHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECL 179

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 180 KWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLGLI 231


>gi|299065227|emb|CBJ36393.1| Transcriptional activator protein solR [Ralstonia solanacearum
           CMR15]
          Length = 236

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190
           A    GL+ L      +    L ++     + AN+  +         +       LT RE
Sbjct: 121 AHGAFGLLTLARGADPLSAAELEQLSATTNWLANLAHALMSPFLMPKLVPESSAALTARE 180

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 181 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236


>gi|172152203|emb|CAP91064.1| BraR protein [Burkholderia kururiensis]
          Length = 234

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           ++ ++       W   +  L    G S  LL        +  D+ V S++     +    
Sbjct: 1   MSPILAASDETQWFDAVAGLAGSWGFSQVLLAILPRPGMRLEDAYVRSNYASSWRQAYTD 60

Query: 93  SEKDKYYNVLQRPTELFCPV------FHTLP-ENITPPAGMDNRYCSLTFDVARIRIGLM 145
                    +   T+   P+      F T P +++   A        +T  +   R    
Sbjct: 61  QGFAYIDPTVSHCTKHSSPLVWSPDLFATTPQKSMYEEASAHGLRAGVTLPIHGPRQEAG 120

Query: 146 LLFPKGRIILRDRLWE--------IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195
           +L         D+ W+        + L+     +  + +     +    +LT RE ECL 
Sbjct: 121 MLCFVNDSNPNDKFWQHIDTALPNLVLMRDLVIDTSQRHLSAHAQTLIPKLTPRERECLK 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 181 WTALGKSTWEISHILNCSEAVVNFHMKNIRAKFGVNSRRAAAVIATQLGLI 231


>gi|168259766|ref|ZP_02681739.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|200391066|ref|ZP_03217677.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603511|gb|EDZ02057.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205351245|gb|EDZ37876.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 240

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 29/239 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V             VL +P        H   +++           +  F + R     ++
Sbjct: 68  VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124

Query: 147 L-------------------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           L                   F    + LR +L     L+A         D+    +   +
Sbjct: 125 LPNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSAL---TRFEDDMVMAPEMRFS 181

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 182 KREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|167736315|dbj|BAG07414.1| AHL-dependent transcriptional regulator [Gluconacetobacter
           intermedius]
          Length = 236

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 14/229 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTE---YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           DLLA++  L+   +    +    +    VG  H  +V  +  ++ K + I    +P + V
Sbjct: 7   DLLAKLHDLENAATKHDLLSIYLDAVLSVGNVHVTIVELNRIEDPKENFI-HVGYPTEWV 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---------NRYCSLTFDVA 138
                +       ++++   +  P F    +NI                 +  ++     
Sbjct: 66  NFYIENNYIVSDPIIKKSRFMSHPYFWHEIKNINKAEKKIIRDVSEFGIKKGLTIPVHTH 125

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWI 197
              I  +      + I R+    +  L+ +    +K  D         LT RE ECLTW 
Sbjct: 126 DRVIYAICFAFTDKNIDREIELYLRALSNFFITGYKKLDEPADMSLPILTPREKECLTWT 185

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++GK+S E  +I+G+S  TVN +I + + K     R   +  A+   ++
Sbjct: 186 AKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234


>gi|167736311|dbj|BAG07412.1| LuxR-like protein [Gluconacetobacter polyoxogenes]
          Length = 236

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 14/229 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTE---YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           DLLA++  L+   +    +    +    VG  H  +V  +  ++ K + I    +P + V
Sbjct: 7   DLLAKLHDLENAATKHDLLSIYLDAVLSVGNVHVTIVELNRIEDPKENFI-HVGYPTEWV 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---------NRYCSLTFDVA 138
                +       ++++   +  P F     NI                 +  ++     
Sbjct: 66  NFYIENNYIVSDPIIKKSRFMSHPYFWHEIRNINKSEKKIIRDVSEFGIKKGLTIPVHTH 125

Query: 139 RIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
              I  +      + + ++  L+   L   + A   K  +        LT RE ECL W 
Sbjct: 126 DRLIYAICFAFTDKNVDQEIELYLRALSNFFIAGYKKLDEPTDMSPPILTPREKECLRWT 185

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++GK+S E  +I+G+S  TVN +I + + K     R   +  A+   ++
Sbjct: 186 AKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234


>gi|331092883|ref|ZP_04586362.2| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331125377|ref|ZP_04592751.2| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020753|gb|EGI00810.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027159|gb|EGI07214.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 235

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 78/232 (33%), Gaps = 17/232 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D  + +        W   +  +   +G   +LL     F   +  + + + +P D ++C 
Sbjct: 3   DDFSCLAKFLDCRDWESHLRKVLCRLGYKTYLL-SIGGFTTNEPSNRIITTYPLDWLKCY 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD----------NRYCSLTFDVARI 140
                     +++     F P+F             +          ++  S+      +
Sbjct: 62  EDENFILIDPIVKHCRRHFMPLFWGGARRRARGRSKEFWRARERHGLSQGVSIPLRCREM 121

Query: 141 RIGLMLLFP--KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECL 194
                +  P         +     G+L      + +    H     E    LT RE E L
Sbjct: 122 LGSFNVAHPVDSNEEFDDEVNVTFGVLFMLVPFLLEGSQRHLKAPGEQSCSLTMRETEVL 181

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W   GKT+ EI+ ILG S  TVN +IA+  RK     R  A+  A+    +
Sbjct: 182 KWSGAGKTTWEISRILGCSERTVNFHIANASRKLGASNRLQAVGMALAQEFI 233


>gi|167742620|ref|ZP_02415394.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 14]
 gi|167914947|ref|ZP_02502038.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 112]
 gi|167922782|ref|ZP_02509873.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
          Length = 210

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128
           ++ S++P         +        ++       PV  + P N +  A        G+ +
Sbjct: 29  LMVSNYPARWQERYIEARFANIDGAVKAALGSDRPVTWSAPANASKSAFWAEALSFGIAH 88

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183
            + S +   A   IG++ L      I     +    +  + AN+  +    +       D
Sbjct: 89  GWSSASR-GADGAIGVLTLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 147

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A   
Sbjct: 148 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 207

Query: 244 NIV 246
            ++
Sbjct: 208 GML 210


>gi|126458323|ref|YP_001075604.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134283391|ref|ZP_01770091.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|167723653|ref|ZP_02406889.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei DM98]
 gi|167819785|ref|ZP_02451465.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167849631|ref|ZP_02475139.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167898230|ref|ZP_02485632.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167906588|ref|ZP_02493793.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|237510070|ref|ZP_04522785.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242312988|ref|ZP_04812005.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254190270|ref|ZP_04896779.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254193498|ref|ZP_04899932.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|254262913|ref|ZP_04953778.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254300529|ref|ZP_04967975.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|126232091|gb|ABN95504.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|134245140|gb|EBA45234.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|156105358|gb|ABU49178.1| BpsR2 [Burkholderia pseudomallei]
 gi|157810414|gb|EDO87584.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|157937947|gb|EDO93617.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169650251|gb|EDS82944.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|235002275|gb|EEP51699.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242136227|gb|EES22630.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254213915|gb|EET03300.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
          Length = 236

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128
           ++ S++P         +        ++       PV  + P N +  A        G+ +
Sbjct: 55  LMVSNYPARWQERYIEARFANIDGAVKAALGSDRPVTWSAPANASKSAFWAEALSFGIAH 114

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183
            + S +   A   IG++ L      I     +    +  + AN+  +    +       D
Sbjct: 115 GWSSASR-GADGAIGVLTLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 173

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A   
Sbjct: 174 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 233

Query: 244 NIV 246
            ++
Sbjct: 234 GML 236


>gi|288733198|emb|CBI71275.1| UnaR protein [Burkholderia unamae]
          Length = 234

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 75/235 (31%), Gaps = 25/235 (10%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           ++ ++      +W   +  L    G S  +L        +  D+ + +++     +    
Sbjct: 1   MSPVLDAPEEAAWFDAVTKLASSWGFSQLMLAILPRPGMRLEDAFIRTNYSAAWRQTYND 60

Query: 93  SEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVARIR 141
                +   +   T    P+             ++ E             +L     R  
Sbjct: 61  HGMAYFDPTVTHCTTRSSPLIWSPELFATEQQQSMYEEARAYGLRAG--ITLPIHGPRQE 118

Query: 142 IGLMLLFPKGRIILRDRLWE----------IGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +G++           D  W+          +        +     D       +LT RE 
Sbjct: 119 VGMLCFV--NDASPSDGFWDDVNRALPNLVLLRDLVLDTSHRHLTDHVQSLIPKLTPREK 176

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 177 ECLKWTALGKSTWEISHILNCSEAVVNFHMKNIRGKFGVNSRRAAAVIATQMGLI 231


>gi|193066393|ref|ZP_03047441.1| regulatory protein SdiA [Escherichia coli E22]
 gi|192925978|gb|EDV80624.1| regulatory protein SdiA [Escherichia coli E22]
          Length = 240

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL---WEIGLLAAYQA 170
           H L   +T    + NR            +       +   IL D L    ++ +  +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVCESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 227

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 86/212 (40%), Gaps = 18/212 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           ++++Y+  S + ++  +  QE     +V    P  +V  + + + + Y     V Q+   
Sbjct: 17  SVSDYLELSGYSVITANDGQEAL--FMVDEYNPDLIVTDIIMPQMNGYELVRRVRQQAMF 74

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWE 161
              PV          E I       + Y    F++  +   +  L  + +II  + R   
Sbjct: 75  RLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLLERSQIIQSEYRFSH 134

Query: 162 IGLLA-------AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
              L            N   +          LT RE E L  ++ G ++ ++   L +S 
Sbjct: 135 KESLGISGLTKPGDAHNSLSTQIQTSHLHSSLTHREQEVLELLTHGLSNADMGHQLHLSP 194

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  Y++S++RKT+T  R+  + +A+++ +V
Sbjct: 195 RTVEKYVSSLLRKTSTSNRAELVRFAMKHGLV 226


>gi|307824873|ref|ZP_07655096.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
 gi|307734231|gb|EFO05085.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
          Length = 236

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 20/231 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           L  +  + C       + + ++ +G  H  + L R  L       +++ +++P       
Sbjct: 9   LQALQSIQCAHQLFQTILSFSKELGFDHCAYGL-RMPL-PLTNPKTLMFNNYPTAWQAQY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA--------RIRI 142
                      +Q       P+  T  +  +P + +    CS    V            +
Sbjct: 67  QAKNYLAIDPTVQHAMRSLLPIIWTD-DLFSPASDLWEEACSFGLRVGWAQSSRDFNGFV 125

Query: 143 GLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           G++ L      I    L            +A    +   +  +    +  L+ RE+E L 
Sbjct: 126 GMLTLARSNEPITEIELDANKFKMAWLTQVAHLGMSRCLTPKLMQEVNVTLSNREIEVLR 185

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W ++GKTS EI+ IL I+  TVN +I +++ K     ++ A   A    ++
Sbjct: 186 WTADGKTSSEISCILNIAERTVNFHINNVVTKLNAANKTSATIKAAMLGLL 236


>gi|13472562|ref|NP_104129.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023308|dbj|BAB49915.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 256

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 85/233 (36%), Gaps = 21/233 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLV--- 87
           L +             R   ++  + AS F L       E+ +L     SD+P   V   
Sbjct: 26  LSSETHHAVTIPDAVRRCRWISVDINASAFGLYFVSPSPERARLVPCFDSDYPGIAVATK 85

Query: 88  -----RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-----PPAGMDNRYCSLTFDV 137
                    +          +  T+        +  N+       P        +     
Sbjct: 86  FIAGANGEEIVRHTHNSTEPRWWTDDGLAAMAEMFGNLAWTAQLSPLAPGTSGIAFPVHA 145

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHWGKDFELTGREVEC 193
            R + GL++       + +D L+EI      L A  A +  S     G+   ++ RE+EC
Sbjct: 146 DRGQCGLVVFLGSKMALPQDALYEIHARCFSLFAAVARIRPSD---AGRMRAISKRELEC 202

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L   + G TS+EIA +L +S +T N Y+    +K     R+ A+A A+R  ++
Sbjct: 203 LKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255


>gi|218532854|ref|YP_002423670.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218525157|gb|ACK85742.1| transcriptional regulator, LuxR family [Methylobacterium
           chloromethanicum CM4]
          Length = 243

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 83/229 (36%), Gaps = 11/229 (4%)

Query: 25  HLPTRSDLLARMIP------LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
              +R D+L  ++P      ++  +S  + +  L       ++L++  +   E       
Sbjct: 18  RAHSREDILRAIMPRLNALGIEYVISAMIPLKRLPARTQ-KNYLILE-NTSDEWNRLYFS 75

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D V    LS    +      P  +  P    +          D    ++     
Sbjct: 76  KGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDG--FTVPLATL 133

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWI 197
               G +        I   +   + LLA+Y        D     +   LT RE E L W+
Sbjct: 134 EEERGGLTFAGPRLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWV 193

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKT  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  ++
Sbjct: 194 AEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242


>gi|218134363|ref|ZP_03463167.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989748|gb|EEC55759.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC
           43243]
          Length = 218

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D A +R  +  +      +          L     +     D+  GK  +LT
Sbjct: 104 DGYVLKDSDSATLRKAITAVHMGEGYVEPS-------LTPLLNSSLVERDIMTGKVNDLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ G  + EIAV L IS  TV N+I++I RK     R+ A  +A++N IV
Sbjct: 157 KRELQVLKLIANGMFNREIAVQLKISERTVKNHISNIFRKINVSDRTQAAVFAIKNKIV 215


>gi|59940051|gb|AAX12564.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIFPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + ++
Sbjct: 187 ETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIANGVSSGML 243


>gi|152970958|ref|YP_001336067.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955807|gb|ABR77837.1| transcriptional activator for cell division (LuxR/UhpA family)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 228

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 17/230 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDLVRC 89
           +L +   +         +   TE +   ++ L  R  + F   ++     S +P   +  
Sbjct: 1   MLHQFQSMATGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQ--STYPRAWMSH 58

Query: 90  MALSEKDKYYNVLQRPTELF------CPVFHTLPENITPPAG----MDNRYCSLTFDVAR 139
                      VL+    +         +F   P                 C    + A+
Sbjct: 59  YQAENYFAIDPVLRPENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPNHAQ 118

Query: 140 IRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             + +            D L          +    +    ++    + + + RE+E L W
Sbjct: 119 GFLSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEILKW 178

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV   ++
Sbjct: 179 TAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 228


>gi|291486102|dbj|BAI87177.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 229

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
           +   +  + +    +  ++   D   E     IV    P  ++  + +   +      ++
Sbjct: 15  FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70

Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             EL+                V H L          +    +L   V  +  G   L PK
Sbjct: 71  LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK 130

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207
              +  + + E   LA    +    ++V+      L   T RE E L  +++GK++  I 
Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L IS  TV N++++I++K     R+ A+  A++N 
Sbjct: 188 ESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNG 224


>gi|288922222|ref|ZP_06416420.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288346413|gb|EFC80744.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 239

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 1/155 (0%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++        + R   +   V     +           Y   +     +   +  +   
Sbjct: 82  GIAAAGAIKRSVPRVRVVMLTVSDEESDLFEAIKAGAVGYLLKSIPPHEVADAVRAVHSG 141

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I      ++ +  A  A      D        LT RE+E L  ++EG+ + EIA  L
Sbjct: 142 QSLISPSMASKLMVEFATMARGG-GEDRPRAHAPHLTARELEVLKLVAEGRANREIARKL 200

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 201 FISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235


>gi|218247226|ref|YP_002372597.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257061439|ref|YP_003139327.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167704|gb|ACK66441.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256591605|gb|ACV02492.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 223

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 14/208 (6%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL---QRPTE 107
           A+ +Y+  S + ++     QE    S++ +  P  LV  + + +KD Y  V    Q P  
Sbjct: 17  AVKDYLELSGYSVITAQNGQEAL--SLLETYRPHLLVSDIKMPQKDGYTLVRHLRQLPEF 74

Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-- 160
              PV       T  E I       + Y    F++  ++  +  L  K +II  +  +  
Sbjct: 75  RLLPVVFLTERGTKEERIQGYEVGCDVYLPKPFEMDELKAVIRNLVEKTQIIQSEWRFSQ 134

Query: 161 -EIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            E       + +  ++  V        LT RE + L  ++ G ++ EI   L +S  TV 
Sbjct: 135 GESQPKPTLEPSQKEAIAVPSLLNSLHLTSRESQVLNLLARGLSNGEIGQNLHLSSRTVE 194

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            Y++S++RKT T  R+  + +A+ ++++
Sbjct: 195 KYVSSLLRKTETNNRAELVRFALDHHLI 222


>gi|16519915|ref|NP_444035.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii
           NGR234]
 gi|2495427|sp|P55629|Y4QH_RHISN RecName: Full=Putative HTH-type transcriptional regulator y4qH
 gi|2182594|gb|AAB92463.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii
           NGR234]
          Length = 326

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---KDF 184
               ++     R    +M           DR      LAA   ++  +   +     K  
Sbjct: 203 RSGITVPLRGPRGSCAIMSFARHCEREFHDRTIAYLQLAATHFHLRVAKIANLNAVQKIP 262

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE EC+ W++ GK+S +I VI+ IS NTVN +I ++MRK  T +R+ A   A+   
Sbjct: 263 ALSLREKECVLWVARGKSSWDIGVIMRISENTVNFHIKNVMRKLGTSSRTVAAIKAISLG 322

Query: 245 IV 246
           I+
Sbjct: 323 II 324


>gi|43288|emb|CAA27327.1| unnamed protein product [Escherichia coli]
          Length = 241

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR---IILRDRLW-EIGLLA--AYQANM 172
                 G+     S+        +G +      R    IL D L  ++ LL   +  A M
Sbjct: 108 EAARAHGLRRGVHSVFNAAQTGALGFLSFSRCSRREIPILSDELQLKMQLLVRESLMALM 167

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     
Sbjct: 168 RLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPN 227

Query: 233 RSGAIAYAVRNNIV 246
           ++    YA    ++
Sbjct: 228 KTQVACYAAATGLI 241


>gi|163853910|ref|YP_001641953.1| autoinducer-binding domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665515|gb|ABY32882.1| Autoinducer-binding domain protein [Methylobacterium extorquens
           PA1]
          Length = 243

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 83/229 (36%), Gaps = 11/229 (4%)

Query: 25  HLPTRSDLLARMIP------LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
              +R D+L  ++P      ++  +S  + +  L       ++L++  +   E       
Sbjct: 18  RAHSREDILRAIMPRLNALGIEYVISAMIPLKRLPARTQ-KNYLILE-NTSDEWNRLYFS 75

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D V    LS    +      P  +  P    +          D    ++     
Sbjct: 76  KGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDG--FTVPLATL 133

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWI 197
               G +        I   +   + LLA+Y        D     +   LT RE E L W+
Sbjct: 134 EEERGGLTFAGPQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWV 193

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKT  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  ++
Sbjct: 194 AEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242


>gi|298490188|ref|YP_003720365.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298232106|gb|ADI63242.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 227

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 86/212 (40%), Gaps = 18/212 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           ++++Y+  S + ++  D  QE    ++V  + P  +V  + +   + Y     V Q+   
Sbjct: 17  SISDYLELSGYSVIMADDGQEAL--AMVEENNPDLIVTDIVMPRLNGYELVRRVRQKAEF 74

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWE 161
              PV          E I       + Y    F++  +   +  L  + +II  + R   
Sbjct: 75  RLLPVILLTERTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLLERSQIIQSEYRFPH 134

Query: 162 IGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISR 214
              L        +  +               LT RE E L  ++ G ++ +I   L +S 
Sbjct: 135 QDNLETSITGKLRDSNHALSTQIHAPKLLSSLTTREQEVLELLTHGLSNADIGNQLHLSP 194

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  Y++S++RKT T  R+  + +A+++ +V
Sbjct: 195 RTVEKYVSSLLRKTLTSNRAELVRFAMKHGLV 226


>gi|212638021|ref|YP_002314541.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559501|gb|ACJ32556.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 208

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             M  S         +LT RE+E L  I++GKT+ EIA  L IS  TV  ++++I+ K  
Sbjct: 131 GKMMNSMRKPSLPHEQLTSREMEVLLLIAQGKTNQEIAEELFISLKTVKVHVSNILAKLD 190

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R+ A+ YA ++ +V
Sbjct: 191 VQDRTQAVIYAFKHGLV 207


>gi|194468906|ref|ZP_03074890.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455270|gb|EDX44109.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 23/236 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPPAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V             VL +P        H   +++           +  F + R     ++
Sbjct: 68  VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124

Query: 147 LFPKGRIIL---RDRLW-----------EIGLLAAYQANMFKS--YDVHWGKDFELTGRE 190
           L  +    L   R  L             + LLA    +       D+    +   + RE
Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKRE 184

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|167564970|ref|ZP_02357886.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
 gi|167572172|ref|ZP_02365046.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 238

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 74/234 (31%), Gaps = 25/234 (10%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
              ++   C  S   +       +G  +F   R  +             +P +       
Sbjct: 10  FNEILSATCKKSLFEQTAYHVRQLGFKNF-AYRHQIAGMSS-SRCTLDGFPAEWRLRYDS 67

Query: 93  SEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVARIR 141
           ++      V+Q       P+              + +       +    C +     R  
Sbjct: 68  ADYLSIDPVVQHCRCRTVPLIWSDDLYTTGRAKIMRDEAKSYGLVYGLSCPVH---DRGG 124

Query: 142 IGLMLLFPKGRIILRDRL-------WEIGLLAAYQANMFKSYDVHWGKD--FELTGREVE 192
              ML         RD +           L +   A M +  D    +    +LT RE E
Sbjct: 125 TISMLSMATDAPFERDTIDVLRLLSLSQLLASFVHAAMQELLDCRLRRQGSCDLTARERE 184

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 185 SLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|125973782|ref|YP_001037692.1| two component LuxR family transcriptional regulator [Clostridium
           thermocellum ATCC 27405]
 gi|256004513|ref|ZP_05429492.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 2360]
 gi|281417939|ref|ZP_06248959.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum JW20]
 gi|125714007|gb|ABN52499.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum ATCC 27405]
 gi|255991518|gb|EEU01621.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 2360]
 gi|281409341|gb|EFB39599.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum JW20]
 gi|316940025|gb|ADU74059.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 1313]
          Length = 216

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 42/77 (54%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + N     +     + +LT RE+E L  I++G  + EIA  L IS  TV N++++I +K 
Sbjct: 138 EFNRVTVNEKAKKTENDLTPRELEVLELIAQGLINKEIAKRLFISEKTVKNHVSNIFKKL 197

Query: 229 ATKTRSGAIAYAVRNNI 245
               R+ A  YA ++NI
Sbjct: 198 NVSDRTQAAIYAYKHNI 214


>gi|311105770|ref|YP_003978623.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760459|gb|ADP15908.1| bacterial regulatory protein, LuxR family protein 7 [Achromobacter
           xylosoxidans A8]
          Length = 237

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 86/233 (36%), Gaps = 20/233 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           DLL          +   ++ A+ + +G S+  + L     F   +   ++ SD+P     
Sbjct: 7   DLLLTTNSATSEQAVFTKVAAVAQELGFSYCAYGLRAALPFTNPQ--FVMISDYPIAWQE 64

Query: 89  CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPP--AGMDNRYCSLTFDVARI 140
             A +   +    ++  +    P      VF   PE        G+   +     D A  
Sbjct: 65  RYAQARYLEIDPTVKHCSRSSIPIVWSDRVFAETPELWDEAQAVGLCVGWSQSNLD-AYG 123

Query: 141 RIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVEC 193
             G++ L  +   +    L    L        A    +           +  LT RE E 
Sbjct: 124 TGGMLTLARQKEQLSDAELLSKELRMRWLVTAAHLAFSKVLLPRFKLAPNVPLTRRETEI 183

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W ++GKTS +++ IL I+ +TV  +  + + K   + R+ A+A A    ++
Sbjct: 184 LKWAADGKTSSDVSEILAIAESTVRFHTKNAISKLGARNRTAAVARAALLGLL 236


>gi|167566223|ref|ZP_02359139.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           oklahomensis EO147]
 gi|167573334|ref|ZP_02366208.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           oklahomensis C6786]
          Length = 230

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 20/207 (9%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-- 113
           +G  H  +V           ++VS  +P + V     ++     + + R    +   F  
Sbjct: 26  IGYQHHAIVELSGASHSASVNVVSLHYPSEWVEHYTRNDYFD-IDPIPRAAFRYSTPFSW 84

Query: 114 -----------HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                      H L E     AG+DN   S+        + L+ L         +  W  
Sbjct: 85  SDVATSNLRERHLLMEA--EDAGLDNG-ISIPLHQPLGHVLLINLSGTAPTHDAEAKWRN 141

Query: 163 GLLAAYQANMF---KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             L   Q ++                LT RE  CLTW++ GK+S  IA +L IS+ TV+ 
Sbjct: 142 AYLLGMQFHLQFQSMRTSRPIPPSVHLTDREQICLTWVARGKSSWVIANMLDISKYTVDF 201

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I + M K  T++R+ A   A R  ++
Sbjct: 202 HIENAMEKLNTRSRTFAAVKATRQGLI 228


>gi|9297032|sp|O30919|SOLR2_RALSO RecName: Full=Transcriptional activator protein solR
 gi|2444467|gb|AAC45947.1| SolR [Ralstonia solanacearum]
          Length = 236

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190
           A    GL+ L      +    L ++ +   + AN+  +         +    +  LT RE
Sbjct: 121 AHGAFGLLTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAVLTTRE 180

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 181 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236


>gi|300689864|ref|YP_003750859.1| transcriptional activator protein solR [Ralstonia solanacearum
           PSI07]
 gi|299076924|emb|CBJ49537.1| Transcriptional activator protein solR [Ralstonia solanacearum
           PSI07]
          Length = 236

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190
           AR   GL+ L      +    L  +     + AN+  +         +    +  LT RE
Sbjct: 121 ARGAFGLLTLARHADPLTAAELDRLSATTNWLANLAHTLMSPFLMPKLVPESNAVLTARE 180

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 181 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIVIGLI 236


>gi|302035554|ref|YP_003795876.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300603618|emb|CBK39949.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 223

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  +    T     D+    +   +  I  G  L+ P    +    L E  L+     +
Sbjct: 92  IFDLVRAGATGYLLKDSESSQIVAAIRAIYRGESLIHPS---VASKILAEFSLM-----S 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K     W +  +LT RE+  L  +++GKT+ EIA  L +S  TV N++ +I  K    
Sbjct: 144 QKKGKKPAWVEH-DLTEREITVLRLVADGKTNKEIANNLDLSEKTVKNHVRNIFHKLQVY 202

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   A+R  ++
Sbjct: 203 DRTQAAILAIRKGLI 217


>gi|91776759|ref|YP_546515.1| LuxR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710746|gb|ABE50674.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus
           KT]
          Length = 272

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L W+  GK++ EIA IL IS  TV N++ +I+RK   + RS A A A R  +
Sbjct: 210 ITPREKEILQWVHTGKSNWEIATILEISPLTVKNHMQNILRKLDVQNRSHAAAKAYRLGL 269

Query: 246 V 246
           +
Sbjct: 270 I 270


>gi|16760896|ref|NP_456513.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29141412|ref|NP_804754.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213053513|ref|ZP_03346391.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213426356|ref|ZP_03359106.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213616131|ref|ZP_03371957.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650336|ref|ZP_03380389.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289824072|ref|ZP_06543670.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25302436|pir||AH0749 cell-division regulatory protein STY2158 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503193|emb|CAD05699.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137039|gb|AAO68603.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 23/236 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPQAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V             VL +P        H   +++           +  F + R     ++
Sbjct: 68  VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124

Query: 147 LFPKGRIIL---RDRLW-----------EIGLLAAYQANMFKS--YDVHWGKDFELTGRE 190
           L  +    L   R  L             + LLA    +       D+    +   + RE
Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKRE 184

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|282863833|ref|ZP_06272891.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561534|gb|EFB67078.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 219

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 5/183 (2%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              DL  + + D +V  D    ++  +  +       V      L    F+         
Sbjct: 41  AAVDLAAKLRPDVVVM-DVRMPVLDGIEATRLLAGAGVPHPVKVLVVTTFNLDEYVYEAL 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +       +++  G+  +     ++  +   +  L+  Y A +  + D    +D
Sbjct: 100 RAGAGGFLLKDAPPSQLLQGIRTVAAGAALLDPEVTRQ--LVGRYAARIRPTGDA--ARD 155

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  I++G +++EIA  L ISR TV  +++ I+ K   + R  A+ YA R 
Sbjct: 156 IPLTPRELEVLRLIADGLSNNEIAAALVISRETVKTFVSRILTKLGLRDRVQAVIYAYRQ 215

Query: 244 NIV 246
            +V
Sbjct: 216 GLV 218


>gi|186473257|ref|YP_001860599.1| LuxR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195589|gb|ACC73553.1| transcriptional regulator, LuxR family [Burkholderia phymatum
           STM815]
          Length = 234

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 23/234 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           ++ ++  +  V+W   +  L +  G    L+        +  D+ + S +     +    
Sbjct: 1   MSPLLEAENDVTWFRELARLADDWGFDRVLVGILPRPGMRLEDAFIRSTYSPTWRQFYNE 60

Query: 93  SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132
                    +        P+                     H L   ++ P     +   
Sbjct: 61  QGFAHIDPTVAHCMTKSSPLIWSPDLFDTYPAQTMYEEARAHGLRAGVSLPIHGPRQESG 120

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L   V               ++    L    ++   Q ++         K   LT RE E
Sbjct: 121 LICFVNDHNPSDDFWRHLDVVLPNLVLLRDLVIDTSQPHLNTHTQALVPK---LTPREQE 177

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 178 CLKWTARGKSTWEISHILNCSEAVVNFHLKNIRTKFGVNSRRAAAVIATQLGLI 231


>gi|326315054|ref|YP_004232726.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323371890|gb|ADX44159.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 308

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
             +   G   L P  R++ R      L E  LL + QA   +          +LT RE E
Sbjct: 196 AQQAGEGATALEPGQRLLARPLGASGLGETMLLLSVQAAGAEP--AARLPRVDLTPRETE 253

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+WI++GKT+ +IA ILG+S  TVN ++  I  K   +TR+ A A A
Sbjct: 254 VLSWIAKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAALA 301


>gi|17548004|ref|NP_521406.1| transcriptional activator SOLR transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|20140008|sp|P58590|SOLR1_RALSO RecName: Full=Transcriptional activator protein solR
 gi|17430310|emb|CAD17075.1| transcriptional activator solr. transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 236

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190
           A    GL+ L  +   +    L ++     + AN+  +         +       LT RE
Sbjct: 121 AHGAFGLLTLARRADPLTAAELEQLSATTNWLANLAHALMSPFLMPKLVPESSAALTARE 180

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 181 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236


>gi|117928967|ref|YP_873518.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649430|gb|ABK53532.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 303

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 5/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           VR    +  +    + +        +     E       +      Y      +  +   
Sbjct: 140 VRMPKRTGIEACAAIKEVCPSAKIIMLTISDEEADLYEAIKAGAMGYLLKEISIDEVAAA 199

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I         LL  + + + +    H     +LT RE+E L  +++G  +
Sbjct: 200 IRAVHGGQSLISPS--MASKLLNEFASLIKRGDARHQVPAPKLTEREMEVLRLVAKGLNN 257

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS NTV N++ +I+ K    +R  A+ YAVR  ++
Sbjct: 258 RDIAKQLFISENTVKNHVRNILEKLQLHSRMEAVVYAVREKLL 300


>gi|209863456|gb|ACI88828.1| PhzR [Pseudomonas sp. G5(2008b)]
          Length = 241

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 17/213 (7%)

Query: 49  MYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           + AL E       + +     F   +  + +  ++P D V+    +        ++    
Sbjct: 31  LRALRELRFDFFAYGMCSVTPFMRPR--TYMYGNYPEDWVQRYQAANYAVIDPTVKHSKV 88

Query: 108 LFCPVF---HTLPENITPPAGMDNRYCSLTFDV----ARIRIGLMLLFPKGRII------ 154
              P+              +   + +           A+ R+G++ L  K   I      
Sbjct: 89  SSAPILWSNELFRGCADLWSEAKDSHLCHGLAQPSFNAQGRVGVLSLARKNNPISLQEFE 148

Query: 155 -LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
            L+         A  + +  +S    +      +GRE + L W ++GKTS+EI VI+G+ 
Sbjct: 149 ALKPVTRAFAAAAHEKISELESDVRVFNTGVAFSGRECDVLRWTADGKTSEEIGVIMGVC 208

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TVN +  +I RK     R  A++YAV    +
Sbjct: 209 TDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|304394107|ref|ZP_07376030.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130]
 gi|303293547|gb|EFL87924.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130]
          Length = 240

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 87/234 (37%), Gaps = 18/234 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +D +  +  L+           L    GAS F ++  D       D  V ++W  +L+  
Sbjct: 7   TDYVDEISRLETAYDVFRYARRLGNDFGASRFSILTLDKQTSAISDLGVVNNWDPELIAV 66

Query: 90  MALSEKDKYYNVL--------------QRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
              +   K   VL                  +   P    L   +     M    C    
Sbjct: 67  YDENGLSKASPVLGHFETGNRVMTYDMDTMLQERAPESAALARELFNDFDMKYGACCPVN 126

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDFELTGREVE 192
           D    R GL+       ++  D    + LL+ Y  +      +  V   +   L+GRE++
Sbjct: 127 DGKGNRGGLVF-SGNELVLNPDDGAMLHLLSNYLYDHLVQISATSVTRSEMPSLSGREMD 185

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL+  + GKTS E A  L +S +TV +Y+A   +K     R  A+A A+R  ++
Sbjct: 186 CLSHAALGKTSKETARDLELSDHTVTHYLALACKKLEAVNRVHAVAKALRLGLL 239


>gi|89095961|ref|ZP_01168855.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89089707|gb|EAR68814.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 227

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L    +     +    +L   V  +  G   L PK   +  + + E   LA+ +  
Sbjct: 91  VTHALKTGASGYLLKEMDADALVEAVKVVADGGSYLHPK---VTHNLVKEYRRLASDENG 147

Query: 172 MFKSY-DVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             + Y  V   +   L T RE E L  +++GK++  I   L IS  TV N++++I++K  
Sbjct: 148 SSEGYTQVEIRRPLHLLTRRECEVLQLLADGKSNRGIGEALFISEKTVKNHVSNILQKMN 207

Query: 230 TKTRSGAIAYAVRNN 244
              R+ A+  A++N 
Sbjct: 208 VNDRTQAVVVAIKNG 222


>gi|326202012|ref|ZP_08191882.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
 gi|325987807|gb|EGD48633.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
          Length = 216

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 41/77 (53%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + N    Y+        LT REVE L  I+EG  + EIA  L IS  TV N+I++I +K 
Sbjct: 138 EFNRVTLYEQDKSIANNLTNREVEVLKLIAEGMINKEIAKTLYISEKTVKNHISNIFKKL 197

Query: 229 ATKTRSGAIAYAVRNNI 245
               R+ A  YA ++NI
Sbjct: 198 DVNDRTQAAIYAFKHNI 214


>gi|167913657|ref|ZP_02500748.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 112]
          Length = 238

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 19/231 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
              ++   C  S   +       +G  +F   R  +         +   +P +       
Sbjct: 10  FNEILSATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPAEWRLRYDA 67

Query: 93  SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143
           ++      V+Q       P ++H      +    M +           S         I 
Sbjct: 68  ADYLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 127

Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
           ++ +            ILR       L +   A M +  D    +    +LT RE E L 
Sbjct: 128 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 187

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 188 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|15965591|ref|NP_385944.1| putative transcription regulator HSL-dependent protein
           [Sinorhizobium meliloti 1021]
 gi|307302711|ref|ZP_07582467.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318559|ref|ZP_07597993.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15074772|emb|CAC46417.1| Quorum sensing system, AHL autoinducer-binding, luxR family,
           regulator of sinI [Sinorhizobium meliloti 1021]
 gi|306895899|gb|EFN26651.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306903075|gb|EFN33666.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 245

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +R      P+F    E      G+     S    +A + IG  +   +     R  L + 
Sbjct: 95  RRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLAIGANMSPVEWSAYRRCHLRDF 154

Query: 163 GLLAA-YQANMFKSYDVHWG---KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            L A  + A+M +   +      +D  LTGRE E LTW + GK+  EIA ILGIS  TV 
Sbjct: 155 QLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVR 214

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ +  RK    + + A+A+AVR+ ++
Sbjct: 215 FFMTNARRKLNVVSNTQAVAHAVRHALI 242


>gi|297153818|gb|ADI03530.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 219

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  +       V      L    F+             + +     
Sbjct: 52  EVVVMDVRMPVLDGIEATRLLAGAGVPHPVKVLVVTTFNLDKYVYEALRAGASGFLLKEA 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             +++  G+  +     ++  +      L+  Y A +  + D    +D  LT RE+E L 
Sbjct: 112 PPSQLLHGIRTVATGAALLDPEVTRR--LVGTYVARIRPAEDT--SRDIPLTPRELEVLR 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I++G ++ EIA  L IS  TV  +++ I+ K   + R  A+ YA R  +V
Sbjct: 168 LIADGFSNSEIAAALQISPETVKTFVSRILTKLDLRDRVQAVVYAYRQGLV 218


>gi|90420983|ref|ZP_01228887.1| possible transcriptional regulator, lysR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334761|gb|EAS48537.1| possible transcriptional regulator, lysR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 294

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 87/248 (35%), Gaps = 14/248 (5%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           + + +   +    +    D L R+ P    ++ T  +  +    G SH  ++      + 
Sbjct: 46  SGQADVGAAVPGAMSGALDRLNRLAPPWDEIALTQLLGDVATDFGFSHAAVLSVPSTDDG 105

Query: 73  KLD-SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF---HTLPENITPP----- 123
                ++ S+W     +        +   V+        P      TL     P      
Sbjct: 106 GTATRLLLSNWSESFGQAYEQLGLHRSKLVVGALKTDPMPFVWDIDTLYGADEPDPSPAA 165

Query: 124 -AGMDNRYCSLTFDVARIRI---GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
              M+  Y +  F          G +    +   +  + + E+ L A     M  +    
Sbjct: 166 RMLMEAEYLAGAFFPVHGLTAFNGALSFAGRSCALPAEAIRELHLFAFALFGMLAAARFE 225

Query: 180 WGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             + +  L+ RE +CL     GKTS EI +IL +S  T++ Y+ +  RK     R+ A+A
Sbjct: 226 ENRRNNPLSVRERDCLKLAMLGKTSSEIGIILSLSEYTISQYLTAAQRKLDASNRTHAVA 285

Query: 239 YAVRNNIV 246
            A +   +
Sbjct: 286 LAAQLGYL 293


>gi|76057938|emb|CAJ30486.1| PlaR protein [Burkholderia plantarii]
          Length = 240

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            AR   GL+ +  +   +    +  + L A + AN+  S         +       LT R
Sbjct: 120 AARGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA-IAYAVRNNIV 246
           E E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A +  A+   ++
Sbjct: 180 EREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVVKAIGMGLI 237


>gi|284034837|ref|YP_003384768.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283814130|gb|ADB35969.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 219

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 6/172 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLT 134
            +V  D    ++  +  +        + RP ++       L E +        + +    
Sbjct: 52  DVVVMDVRMPVLDGIEATRLLA-GEGVARPVKVLVVTTFNLDEYVYEALRAGASGFLLKD 110

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              +++  G+  +     ++  +   +  L+  Y A +  + +     +  LT RE+E L
Sbjct: 111 APASQLLQGIRTVAGGAALLAPEVTRQ--LVGRYAARVRPAENAPA--EVPLTPRELEVL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G ++ EIA  L IS  TV  Y++ I+ K   + R  A+ YA R  +V
Sbjct: 167 LLMADGLSNSEIAATLVISHETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218


>gi|240142370|ref|YP_002966880.1| LuxR type transcriptional regulator [Methylobacterium extorquens
           AM1]
 gi|240012314|gb|ACS43539.1| LuxR type transcriptional regulator [Methylobacterium extorquens
           AM1]
          Length = 242

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 68/230 (29%), Gaps = 14/230 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D +  +            +  +    G  HF++       ++    ++    P       
Sbjct: 11  DFVEGLDDCHDHDQVAHSVERILAEFGFEHFVITGLPNPNDRLDQVLLIRRLPAGWFEHY 70

Query: 91  ALSEKDKYYNVLQRPTELFCPV--------FHTLPENITPPAGMDN----RYCSLTFDVA 138
           A         V +       P           T P  I       +    R  S+     
Sbjct: 71  ARHNYMYLDPVFRNCRATTSPFDWGEAPYDPETEPGAIEVMQRATDFGMARGFSVPIHGP 130

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTW 196
                   +  +   +       + ++A Y     +       K     LT RE E LTW
Sbjct: 131 EGCEACFSMSGRNPDLTGRTKPAVHMIAMYAFERARQVGRRPAKPPSNPLTQREQEVLTW 190

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + GK+S + A I+ I+  T   +  +   K     R+ A+  A+++  +
Sbjct: 191 AALGKSSRDTAEIMQITERTALAHAVNATHKLGAANRTQAVVRAMQSKFI 240


>gi|222350143|emb|CAX32456.1| LuxR-type regulator [Rhizobium leguminosarum]
          Length = 251

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 10/166 (6%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDNRYCSLTFDVARI 140
           PF     MA   KD +    +R  ++    F H L +  I P  G +    SL+     I
Sbjct: 93  PFRWREAMAAFHKDAH---QRRMEQMMVDAFGHGLEDGYIFPIHGRNGTLASLSLAGKPI 149

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            +  + +      + R   W +  L         + +     D  LT RE+E L +++EG
Sbjct: 150 ELSPVEIALL-EAVARKAFWRLLDLKGEA----PALETVLPADTPLTRREMEILHYLAEG 204

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+ ++
Sbjct: 205 MTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGLI 250


>gi|198283772|ref|YP_002220093.1| LuxR family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665417|ref|YP_002426403.1| autoinducer-binding transcriptional regulator, LuxR family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|71044540|gb|AAV53702.2| AfeR [Acidithiobacillus ferrooxidans]
 gi|198248293|gb|ACH83886.1| transcriptional regulator, LuxR family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517630|gb|ACK78216.1| autoinducer-binding transcriptional regulator, LuxR family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 237

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 65/184 (35%), Gaps = 14/184 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRY 130
           ++ S++P          E       ++       PV      F    E          R 
Sbjct: 53  VLFSNYPAVWQARYQAQEYQAIDPTVRHAMRSPSPVVWSDDLFAPARELWEEARSFGLRA 112

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDF 184
                      +G ML   +    +    W+        L+ A   +M +        + 
Sbjct: 113 GLAHTCRDAGGMGGMLTLARAGETVTTAEWQAKACHILWLVQAVHLSMIRVIAPKLQPEI 172

Query: 185 --ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ REVE L W  EGKTS EIA IL I+  TVN +I+  M K     ++ A+  A  
Sbjct: 173 AVQLSCREVEVLRWTGEGKTSGEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAAM 232

Query: 243 NNIV 246
             ++
Sbjct: 233 LGLL 236


>gi|67921004|ref|ZP_00514523.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67857121|gb|EAM52361.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 231

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 19/211 (9%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPT 106
            A+ +Y+    +  +     ++    S+V +  P  L+  + +  KD Y     + Q P 
Sbjct: 16  VAVKDYLEMHGYGCITAQNGEDAF--SLVQTYRPHLLISDIKMPRKDGYTLVKELRQLPE 73

Query: 107 ELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
               PV       T    I       + Y    F++  ++  +  L  + +II  +  W 
Sbjct: 74  FRLLPVVFLTECSTTESRIQGYQVGCDVYLPKPFEMDELKAVIRNLLERSQIIQSE--WR 131

Query: 162 IGLLAAYQAN-------MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                +   N         K       + FELT RE E L  ++ G ++ EI   L +S 
Sbjct: 132 FSQNKSVNQNTPQQQQQAAKISIQAEIEFFELTRRESEVLDLLTMGLSNGEIGQRLHLSP 191

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T+  Y++S++RKT T  R+  + +A  +++
Sbjct: 192 RTIEKYVSSLLRKTDTSNRAELVRFAFDHHL 222


>gi|296331212|ref|ZP_06873685.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675910|ref|YP_003867582.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151663|gb|EFG92539.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414154|gb|ADM39273.1| two-component response regulator [liaS] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 211

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 7/167 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPENITPPAGMDNRYCSLTFDVAR 139
           P  ++  + +   D      Q   EL  P   V  +  ++      ++    S     ++
Sbjct: 48  PDVILMDLVMEGMDGIEATKQICRELPDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSK 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                  +    R   +        +A    +  +    H      LT RE+E L  I+E
Sbjct: 108 AA----EIADAIRAASKGEPKLESKVAGKVLSRLRHSGEHALPHESLTKRELEILCLIAE 163

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++V
Sbjct: 164 GKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLV 210


>gi|323961965|gb|EGB57564.1| autoinducer binding domain-containing protein [Escherichia coli
           H489]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|74311738|ref|YP_310157.1| DNA-binding transcriptional activator SdiA [Shigella sonnei Ss046]
 gi|82543616|ref|YP_407563.1| DNA-binding transcriptional activator SdiA [Shigella boydii Sb227]
 gi|157156210|ref|YP_001463220.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           E24377A]
 gi|187730097|ref|YP_001879705.1| DNA-binding transcriptional activator SdiA [Shigella boydii CDC
           3083-94]
 gi|193071152|ref|ZP_03052076.1| regulatory protein SdiA [Escherichia coli E110019]
 gi|194439563|ref|ZP_03071636.1| regulatory protein SdiA [Escherichia coli 101-1]
 gi|300822312|ref|ZP_07102453.1| autoinducer binding domain protein [Escherichia coli MS 119-7]
 gi|300917358|ref|ZP_07134027.1| autoinducer binding domain protein [Escherichia coli MS 115-1]
 gi|73855215|gb|AAZ87922.1| transcriptional regulator of ftsQAZ gene cluster [Shigella sonnei
           Ss046]
 gi|81245027|gb|ABB65735.1| transcriptional regulator of ftsQAZ gene cluster [Shigella boydii
           Sb227]
 gi|157078240|gb|ABV17948.1| regulatory protein SdiA [Escherichia coli E24377A]
 gi|187427089|gb|ACD06363.1| regulatory protein SdiA [Shigella boydii CDC 3083-94]
 gi|192955547|gb|EDV86026.1| regulatory protein SdiA [Escherichia coli E110019]
 gi|194421472|gb|EDX37486.1| regulatory protein SdiA [Escherichia coli 101-1]
 gi|300415404|gb|EFJ98714.1| autoinducer binding domain protein [Escherichia coli MS 115-1]
 gi|300525195|gb|EFK46264.1| autoinducer binding domain protein [Escherichia coli MS 119-7]
 gi|309702211|emb|CBJ01527.1| regulatory protein [Escherichia coli ETEC H10407]
 gi|320176080|gb|EFW51148.1| DNA-binding transcriptional activator SdiA [Shigella dysenteriae
           CDC 74-1112]
 gi|323165288|gb|EFZ51076.1| regulatory protein sdiA [Shigella sonnei 53G]
 gi|323174570|gb|EFZ60191.1| regulatory protein sdiA [Escherichia coli LT-68]
 gi|323937191|gb|EGB33471.1| autoinducer binding domain-containing protein [Escherichia coli
           E1520]
 gi|323972721|gb|EGB67922.1| autoinducer binding domain-containing protein [Escherichia coli
           TA007]
 gi|332343642|gb|AEE56976.1| regulatory protein SdiA [Escherichia coli UMNK88]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|117624058|ref|YP_852971.1| DNA-binding transcriptional activator SdiA [Escherichia coli APEC
           O1]
 gi|161486200|ref|NP_754222.2| DNA-binding transcriptional activator SdiA [Escherichia coli
           CFT073]
 gi|162138422|ref|YP_541121.2| DNA-binding transcriptional activator SdiA [Escherichia coli UTI89]
 gi|191173269|ref|ZP_03034799.1| regulatory protein SdiA [Escherichia coli F11]
 gi|218558774|ref|YP_002391687.1| DNA-binding transcriptional activator SdiA [Escherichia coli S88]
 gi|218699520|ref|YP_002407149.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI39]
 gi|227885657|ref|ZP_04003462.1| LuxR family protein [Escherichia coli 83972]
 gi|300982244|ref|ZP_07175956.1| autoinducer binding domain protein [Escherichia coli MS 200-1]
 gi|300993973|ref|ZP_07180620.1| autoinducer binding domain protein [Escherichia coli MS 45-1]
 gi|301050730|ref|ZP_07197588.1| autoinducer binding domain protein [Escherichia coli MS 185-1]
 gi|306814260|ref|ZP_07448426.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101]
 gi|331647509|ref|ZP_08348601.1| regulatory protein SdiA [Escherichia coli M605]
 gi|115513182|gb|ABJ01257.1| DNA-binding transcriptional activator [Escherichia coli APEC O1]
 gi|190906386|gb|EDV65995.1| regulatory protein SdiA [Escherichia coli F11]
 gi|218365543|emb|CAR03270.1| DNA-binding transcriptional activator [Escherichia coli S88]
 gi|218369506|emb|CAR17273.1| DNA-binding transcriptional activator [Escherichia coli IAI39]
 gi|222033657|emb|CAP76398.1| Regulatory protein sdiA [Escherichia coli LF82]
 gi|227837230|gb|EEJ47696.1| LuxR family protein [Escherichia coli 83972]
 gi|281178978|dbj|BAI55308.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           SE15]
 gi|294493959|gb|ADE92715.1| regulatory protein SdiA [Escherichia coli IHE3034]
 gi|300297547|gb|EFJ53932.1| autoinducer binding domain protein [Escherichia coli MS 185-1]
 gi|300307314|gb|EFJ61834.1| autoinducer binding domain protein [Escherichia coli MS 200-1]
 gi|300406419|gb|EFJ89957.1| autoinducer binding domain protein [Escherichia coli MS 45-1]
 gi|305852419|gb|EFM52870.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101]
 gi|307553930|gb|ADN46705.1| DNA-binding transcriptional activator [Escherichia coli ABU 83972]
 gi|307626607|gb|ADN70911.1| DNA-binding transcriptional activator SdiA [Escherichia coli UM146]
 gi|312946508|gb|ADR27335.1| DNA-binding transcriptional activator SdiA [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315286610|gb|EFU46043.1| autoinducer binding domain protein [Escherichia coli MS 110-3]
 gi|315290297|gb|EFU49675.1| autoinducer binding domain protein [Escherichia coli MS 153-1]
 gi|315296532|gb|EFU55829.1| autoinducer binding domain protein [Escherichia coli MS 16-3]
 gi|320194372|gb|EFW69003.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           WV_060327]
 gi|323186796|gb|EFZ72116.1| regulatory protein sdiA [Escherichia coli RN587/1]
 gi|323952411|gb|EGB48284.1| autoinducer binding domain-containing protein [Escherichia coli
           H252]
 gi|323956313|gb|EGB52056.1| autoinducer binding domain-containing protein [Escherichia coli
           H263]
 gi|324007279|gb|EGB76498.1| autoinducer binding domain protein [Escherichia coli MS 57-2]
 gi|324013560|gb|EGB82779.1| autoinducer binding domain protein [Escherichia coli MS 60-1]
 gi|330911724|gb|EGH40234.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional
           activator [Escherichia coli AA86]
 gi|331043233|gb|EGI15371.1| regulatory protein SdiA [Escherichia coli M605]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|300935891|ref|ZP_07150848.1| autoinducer binding domain protein [Escherichia coli MS 21-1]
 gi|300458941|gb|EFK22434.1| autoinducer binding domain protein [Escherichia coli MS 21-1]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|194434963|ref|ZP_03067206.1| regulatory protein SdiA [Shigella dysenteriae 1012]
 gi|194416798|gb|EDX32924.1| regulatory protein SdiA [Shigella dysenteriae 1012]
 gi|320178182|gb|EFW53159.1| DNA-binding transcriptional activator SdiA [Shigella boydii ATCC
           9905]
 gi|332095461|gb|EGJ00482.1| regulatory protein sdiA [Shigella dysenteriae 155-74]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|331663414|ref|ZP_08364324.1| regulatory protein SdiA [Escherichia coli TA143]
 gi|323977903|gb|EGB72989.1| autoinducer binding domain-containing protein [Escherichia coli
           TW10509]
 gi|331059213|gb|EGI31190.1| regulatory protein SdiA [Escherichia coli TA143]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|237705872|ref|ZP_04536353.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA]
 gi|26108586|gb|AAN80789.1|AE016762_42 Regulatory protein sdiA [Escherichia coli CFT073]
 gi|91072709|gb|ABE07590.1| regulatory protein SdiA [Escherichia coli UTI89]
 gi|226900629|gb|EEH86888.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA]
          Length = 244

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 117 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 168

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 169 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 228

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 229 PNKTQVACYAAATGLI 244


>gi|223043570|ref|ZP_03613615.1| two-component response regulator [Staphylococcus capitis SK14]
 gi|222443058|gb|EEE49158.1| two-component response regulator [Staphylococcus capitis SK14]
          Length = 207

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 72/179 (40%), Gaps = 17/179 (9%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD--- 127
           L  I     P  ++  + + E +       + ++  ++   V  +  ++    + +D   
Sbjct: 40  LSYIEQHHLPDIVLLDLVMPEMNGIEITEVLKRQYPQVKVLVLTSYVDDEHVISAIDKGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +  ++   +  +    RII  +             ++ ++         +L+
Sbjct: 100 DGYEMKDVEPQKLIETIHKVLNGERIIHPEA-----------KSVIETVSKKPHFTNKLS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 149 KREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207


>gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 221

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 90/204 (44%), Gaps = 15/204 (7%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           ++++Y+  S + +V     ++     +++   P  L+  + + E D Y     V Q+P  
Sbjct: 17  SVSDYLQLSGYSVVTAANGKQAL--EMLNRYQPHLLITDIVMPEMDGYDLVRQVRQQPAF 74

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV          E I       + Y S  F++  +   +  L  + ++I  D     
Sbjct: 75  RLLPVIFLTGRNKTKERIRGYQSGCDVYLSKPFELEELGAVVRNLLDRMQMIQTDWHIRT 134

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
              A  +     +Y     + + LT RE E LT +++G ++ +I   L +S  T+  Y++
Sbjct: 135 KSQARGEMETLAAY-----QQWGLTQREQEVLTLLTKGLSNAQIGDRLHLSARTIEKYVS 189

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S+++KT    R+  + +A+ ++++
Sbjct: 190 SLLQKTEVHNRAELVRFALEHHLL 213


>gi|86356800|ref|YP_468692.1| transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86280902|gb|ABC89965.1| probable transcriptional regulator protein [Rhizobium etli CFN 42]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 24/235 (10%)

Query: 33  LARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLV 87
             R+                M  LT+ +G + FL++        ++ +  + ++WP ++V
Sbjct: 7   FNRIEEAAAGFNTHYEVFKYMKGLTQGLGMTAFLIMTLPTVDFVEIGATKIITNWPAEMV 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD--------------NRYCSL 133
                        V++R      P F+   E I    G                 +    
Sbjct: 67  DYYDAHNLMVDSPVIRRMLRSTSP-FNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYF 125

Query: 134 TFDVARIRIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               A    G M +       ++   +L  I  L   + +     + H  K    T  E+
Sbjct: 126 PVHDAAGGRGAMSISGSRNFSMVEMAKLLFIATLIYDRLSQLTLNEKH--KPVAFTQSEL 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +CL   + G+ S EIA +L +S + VNN I S++RK    TR+ A+  A+R NI+
Sbjct: 184 DCLRLTAGGRKSSEIAKLLDLSESAVNNQIGSVIRKLGCTTRTQAVVSALRLNII 238


>gi|191168286|ref|ZP_03030079.1| regulatory protein SdiA [Escherichia coli B7A]
 gi|194429919|ref|ZP_03062429.1| regulatory protein SdiA [Escherichia coli B171]
 gi|218554500|ref|YP_002387413.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI1]
 gi|260844320|ref|YP_003222098.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O103:H2 str. 12009]
 gi|260868508|ref|YP_003234910.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O111:H- str. 11128]
 gi|293410275|ref|ZP_06653851.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300818660|ref|ZP_07098868.1| autoinducer binding domain protein [Escherichia coli MS 107-1]
 gi|300925008|ref|ZP_07140932.1| autoinducer binding domain protein [Escherichia coli MS 182-1]
 gi|301327706|ref|ZP_07220912.1| autoinducer binding domain protein [Escherichia coli MS 78-1]
 gi|331668610|ref|ZP_08369458.1| regulatory protein SdiA [Escherichia coli TA271]
 gi|331677801|ref|ZP_08378476.1| regulatory protein SdiA [Escherichia coli H591]
 gi|190901658|gb|EDV61414.1| regulatory protein SdiA [Escherichia coli B7A]
 gi|194412008|gb|EDX28320.1| regulatory protein SdiA [Escherichia coli B171]
 gi|218361268|emb|CAQ98852.1| DNA-binding transcriptional activator [Escherichia coli IAI1]
 gi|257759467|dbj|BAI30964.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O103:H2 str. 12009]
 gi|257764864|dbj|BAI36359.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O111:H- str. 11128]
 gi|284921829|emb|CBG34902.1| regulatory protein [Escherichia coli 042]
 gi|291470743|gb|EFF13227.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300418843|gb|EFK02154.1| autoinducer binding domain protein [Escherichia coli MS 182-1]
 gi|300528832|gb|EFK49894.1| autoinducer binding domain protein [Escherichia coli MS 107-1]
 gi|300845750|gb|EFK73510.1| autoinducer binding domain protein [Escherichia coli MS 78-1]
 gi|323158600|gb|EFZ44614.1| regulatory protein sdiA [Escherichia coli E128010]
 gi|323180833|gb|EFZ66373.1| regulatory protein sdiA [Escherichia coli 1180]
 gi|331063804|gb|EGI35715.1| regulatory protein SdiA [Escherichia coli TA271]
 gi|331074261|gb|EGI45581.1| regulatory protein SdiA [Escherichia coli H591]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|260466633|ref|ZP_05812821.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029639|gb|EEW30927.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 256

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDV 178
           P        +L     R + GL++       + +D L+EI      L A  A +  S   
Sbjct: 131 PLAPGTSGIALPVHADRGQCGLVVFLGSEIALPQDTLYEIHARCFSLFAAVARILPSD-- 188

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G+   ++ RE+ECL   + G TS+EIA +L +S +T N Y+    +K     R+ A+A
Sbjct: 189 -AGRTRAISKRELECLKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVA 247

Query: 239 YAVRNNIV 246
            A+R  ++
Sbjct: 248 KALRLGLI 255


>gi|71057001|emb|CAI51628.1| eR transcriptional regulator [Acidithiobacillus ferrooxidans]
          Length = 214

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 65/184 (35%), Gaps = 14/184 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRY 130
           ++ S++P          E       ++       PV      F    E          R 
Sbjct: 30  VLFSNYPAVWQARYQAQEYQAIDPTVRHAMRSPSPVVWSDDLFAPARELWEEARSFGLRA 89

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDF 184
                      +G ML   +    +    W+        L+ A   +M +        + 
Sbjct: 90  GLAHTCRDAGGMGGMLTLARAGETVTTAEWQAKACHILWLVQAVHLSMIRVIAPKLQPEI 149

Query: 185 --ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ REVE L W  EGKTS EIA IL I+  TVN +I+  M K     ++ A+  A  
Sbjct: 150 AVQLSCREVEVLRWTGEGKTSGEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAAM 209

Query: 243 NNIV 246
             ++
Sbjct: 210 LGLL 213


>gi|311070055|ref|YP_003974978.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870572|gb|ADP34047.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
           +   +  + +    +  ++   D   E     IV    P  ++  + +   +      ++
Sbjct: 15  FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70

Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             EL+                V H L          +    +L   V  +  G   L PK
Sbjct: 71  LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK 130

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207
              +  + + E   LA    +    ++V+      L   T RE E L  +++GK++  I 
Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L IS  TV N++++I++K     R+ A+  A++N 
Sbjct: 188 ESLFISEKTVENHVSNILQKMNVNDRTQAVVVAIKNG 224


>gi|308186328|ref|YP_003930459.1| Transcriptional activator protein phzR [Pantoea vagans C9-1]
 gi|308056838|gb|ADO09010.1| Transcriptional activator protein phzR [Pantoea vagans C9-1]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 90/234 (38%), Gaps = 19/234 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHF--LLVRWDLFQEQKLDSIVSSDWPFDL 86
           RS++  +   L  +      +   TE +G  +F  L+     F   ++   + S +P   
Sbjct: 10  RSEVKEKFQALTASFELKTLLQQFTESLGFDYFAFLIQHPVPFTRPRIH--LHSTYPKLW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPA--GMDNRYCSLTFDVA 138
           V+            VL         +      F             G+ + +        
Sbjct: 68  VKRYEKQNYYAVDPVLTLCQRPGRGMAWSEEQFTDAGNLWHEAREYGLQSGFSCSAMAPN 127

Query: 139 RIRIGLMLLFPKGRIILRDRLWEI----GLLAAYQANMFK--SYDVHWGKDFELTGREVE 192
           R+ IG++ +  +  I ++ R  E+     LLA    +  +  S D         + RE+E
Sbjct: 128 RV-IGILSISSQQPISVQLRHAELEVKLHLLAELSLDTLERFSDDAMMVLKKAFSQRELE 186

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W +EGKT+ EI++IL IS +TVN +  ++ ++     ++    YA    ++
Sbjct: 187 ILKWTAEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240


>gi|56421685|ref|YP_149003.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56381527|dbj|BAD77435.1| two-component response regulator (extracellular proteinase response
           regulator) [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    T     +    +L   V  +  G   L PK   +  + + E   L   +  
Sbjct: 91  VMRALQTGATGYLLKEMDADTLIEAVRIVAEGGSYLHPK---VTHNLIREYRRLTTEKGG 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                +V       LT RE E L  +++GK++  I   L IS  TV N+++SI++K    
Sbjct: 148 AVVKQEVRRPLHL-LTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLNVN 206

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A++N 
Sbjct: 207 DRTQAVVVAIKNG 219


>gi|315506070|ref|YP_004084957.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315412689|gb|ADU10806.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 603

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 5/183 (2%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              DL    + D +V  D    ++  +  +       V      L    F+         
Sbjct: 425 AAVDLAGRLRPDLVVM-DVRMPVLDGIEATRLLAGAGVAHPVKVLVVTTFNLDEYVYEAL 483

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +       A++  G+  +     ++  +   +  L+  Y A +  +       D
Sbjct: 484 RAGASGFLLKDAPPAQLLHGIRTVASGAALLAPEVTRQ--LVGRYAARIRPAEGTPA--D 539

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  I++G ++ EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R 
Sbjct: 540 VGLTPRELEVLRLIADGLSNSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRT 599

Query: 244 NIV 246
            +V
Sbjct: 600 GLV 602


>gi|227822236|ref|YP_002826207.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii
           NGR234]
 gi|227341236|gb|ACP25454.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii
           NGR234]
          Length = 244

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 8/136 (5%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLF-----PKGRIILRDRLWEIGLLAA-YQANM 172
                 G+     +L       R+ L+ +      P+     R  L +  L A  + A+M
Sbjct: 106 EAAEDIGLSTEGVALPLPSPAGRMALLAISANMSPPEWAEYRRCHLRDFQLAANLFHASM 165

Query: 173 FKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            +    D    +D  LT RE E LTW + GK+  EIA ILGIS  TV  ++++  RK   
Sbjct: 166 LEQAMADAIDDRDTRLTSRETEVLTWSAAGKSYWEIATILGISERTVRFFMSNARRKLNV 225

Query: 231 KTRSGAIAYAVRNNIV 246
            + + A+A AVR+ ++
Sbjct: 226 VSNTQAVAQAVRHALI 241


>gi|239828352|ref|YP_002950976.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808645|gb|ACS25710.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. WCH70]
          Length = 225

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA- 170
           V   L    T     +    +L   V  +  G   L PK   +  + + E   LA+ +  
Sbjct: 91  VMRALQTGATGYLLKEMDADTLIEAVKIVAEGGSYLHPK---VTHNLIREYRRLASEKGE 147

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N  +  +V W     LT RE E L  +++GK++  I   L IS  TV N++++I++K   
Sbjct: 148 NKERKREVRWPLHL-LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNV 206

Query: 231 KTRSGAIAYAVRNN 244
             R+ A+  A++N 
Sbjct: 207 NDRTQAVVVAIKNG 220


>gi|260773944|ref|ZP_05882859.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP
           69.14]
 gi|260610905|gb|EEX36109.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP
           69.14]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 15/187 (8%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDN 128
           D++++ ++P    +    S+      +++     F P+       H     I       N
Sbjct: 50  DTLIADNYPLAWRQQYDESQFMLIDPIVRYSMTNFLPIRWSEIRAHHQDSQIIFEEARLN 109

Query: 129 RY---CSLTFDVARIRIGLMLLFPKGRI---ILRDRLWEIGLLAAYQA---NMFKSYDVH 179
                 S+     R   G++           +    +    LL    A   +        
Sbjct: 110 GLKEGFSIPVHGLRGEFGMLSFATSDTRHYDLNLPAIQASQLLVPLLAQNIDNIVRCHRD 169

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                ELT RE +CL+W +EGK++ EIA I+  S  TV  ++++  +K     R  AI  
Sbjct: 170 AKPRAELTCREGQCLSWAAEGKSAWEIAQIINTSERTVKFHLSNACKKLGATNRYQAITK 229

Query: 240 AVRNNIV 246
           A+    +
Sbjct: 230 AILGGYI 236


>gi|226314987|ref|YP_002774883.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097937|dbj|BAH46379.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 9/139 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+ TL    +     +     L   V  +  G   + PK   +    + E   L+  +  
Sbjct: 96  VYRTLRAGASGYLLKEMGTSDLVDAVRVVASGGAYIHPK---VTGKLIEEFRRLSEQEGT 152

Query: 172 MFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
             +S+ V   +  +      LT RE E L  ++EGK++  I   L IS  TV N+++SI+
Sbjct: 153 AERSFSVDESQAIDPKVIESLTRREREVLQLMAEGKSNRAIGEFLFISEKTVKNHVSSIL 212

Query: 226 RKTATKTRSGAIAYAVRNN 244
           +K   + R+ A+  +++N 
Sbjct: 213 QKLNVQDRTQAVVISIKNG 231


>gi|167564011|ref|ZP_02356927.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
 gi|167571156|ref|ZP_02364030.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 238

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 83/242 (34%), Gaps = 33/242 (13%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS--SDWPFDLVR 88
           D+L +             +  +   +G  +F      L   +K ++ V   S++P     
Sbjct: 4   DILDQTSSAKTERDIHDILSRIAARLGFDYFFYG--TLSDMRKPENPVKTVSNYPMAWQE 61

Query: 89  CMALSEKDKYYNVLQRPTELFCP--------------VFHTLPENITPPAGMDNRYCSLT 134
               S   +   V++       P               F          AG      S  
Sbjct: 62  KYKSSGYIRIDPVVRHCGHRLIPLQWNDGICHCREQRNFMEDARGHGLVAGA-----SFP 116

Query: 135 FDVARIRIGLMLLFPKG-------RIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDF 184
                  + ++ L  +                +  G LAA    +     S         
Sbjct: 117 VHSRHGEVSILSLASRSAGGTTSLSAKHAPATFAQGALAAAFVREGMERISNRPDHEPSA 176

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+ECL WI+ GK+S EIA+ILGIS N V  ++  +M K   ++R  A+  A+ + 
Sbjct: 177 PLTHRELECLKWIAAGKSSWEIAMILGISENGVLYHVKKLMAKFDVQSRHLAVLKAMASG 236

Query: 245 IV 246
           +V
Sbjct: 237 VV 238


>gi|323702109|ref|ZP_08113777.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532991|gb|EGB22862.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 218

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 4/118 (3%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y        ++   ++ +      I         +LA +  +   S D H  K   LT 
Sbjct: 103 GYVLKDVHPDQLIQTILGVARGESFIPPA--LTAKVLAEF--SRLTSVDHHDKKHSTLTE 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  +++G+++ +IA  L IS  TV N++ +I +K     R+ A  YA++  +V
Sbjct: 159 RELEVLKQVAKGQSNKDIAKTLFISEKTVKNHLTNIFQKIGVADRTQAALYAIKEKLV 216


>gi|312967117|ref|ZP_07781335.1| regulatory protein sdiA [Escherichia coli 2362-75]
 gi|312288581|gb|EFR16483.1| regulatory protein sdiA [Escherichia coli 2362-75]
          Length = 228

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 101 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 152

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 153 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 212

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 213 PNKTQVACYAAATGLI 228


>gi|161724877|emb|CAO85750.1| LasR protein [Pseudomonas aeruginosa]
          Length = 239

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 25/237 (10%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           D    +      + W+  +  +   +G S   F L+  D  Q+ +   IV  ++P     
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLHKD-SQDYENAFIV-GNYPAAWHE 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDV 137
               +   +    + + T+   P+F           H   E  +    +     ++    
Sbjct: 63  HYDRTGYARVDPTVSQCTQNVLPIFWEASIYQTRKQHEFFEEASAAGLVYG--LTMPLHG 120

Query: 138 ARIRIGLMLLFPKGR------IILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFELTGR 189
           AR  +G + L  +          +   L  + +L  Y  Q+    +++    K   LT R
Sbjct: 121 ARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSR 180

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 181 EKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|15802351|ref|NP_288377.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 EDL933]
 gi|15831908|ref|NP_310681.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751842|ref|ZP_02776864.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113]
 gi|168758227|ref|ZP_02783234.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401]
 gi|168771520|ref|ZP_02796527.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486]
 gi|168777340|ref|ZP_02802347.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196]
 gi|168790328|ref|ZP_02815335.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869]
 gi|168802260|ref|ZP_02827267.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508]
 gi|195939220|ref|ZP_03084602.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810274|ref|ZP_03252150.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206]
 gi|208816575|ref|ZP_03257695.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045]
 gi|208820421|ref|ZP_03260741.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042]
 gi|209399275|ref|YP_002271030.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115]
 gi|217329032|ref|ZP_03445113.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588]
 gi|254793566|ref|YP_003078403.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. TW14359]
 gi|261227589|ref|ZP_05941870.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255819|ref|ZP_05948352.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283093|ref|YP_003499911.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str.
           CB9615]
 gi|12516014|gb|AAG56931.1|AE005414_8 transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362122|dbj|BAB36077.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767387|gb|EDU31231.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196]
 gi|188014167|gb|EDU52289.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113]
 gi|189354905|gb|EDU73324.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401]
 gi|189359736|gb|EDU78155.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486]
 gi|189370214|gb|EDU88630.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869]
 gi|189375707|gb|EDU94123.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508]
 gi|208724790|gb|EDZ74497.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206]
 gi|208730918|gb|EDZ79607.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045]
 gi|208740544|gb|EDZ88226.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042]
 gi|209160675|gb|ACI38108.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115]
 gi|209767028|gb|ACI81826.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767030|gb|ACI81827.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767032|gb|ACI81828.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767034|gb|ACI81829.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767036|gb|ACI81830.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|217318379|gb|EEC26806.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588]
 gi|254592966|gb|ACT72327.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. TW14359]
 gi|290762966|gb|ADD56927.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str.
           CB9615]
 gi|320647124|gb|EFX15957.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H- str. 493-89]
 gi|320658009|gb|EFX25771.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320658581|gb|EFX26275.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668479|gb|EFX35306.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326342324|gb|EGD66105.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. 1044]
 gi|326344831|gb|EGD68578.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. 1125]
          Length = 240

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|53717016|ref|YP_106048.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           ATCC 23344]
 gi|67643368|ref|ZP_00442115.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|124382942|ref|YP_001025964.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126445405|ref|YP_001061548.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|126446264|ref|YP_001078053.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10247]
 gi|126457742|ref|YP_001074487.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134284195|ref|ZP_01770887.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|167003599|ref|ZP_02269385.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|167741352|ref|ZP_02414126.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 14]
 gi|167818528|ref|ZP_02450208.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167826910|ref|ZP_02458381.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
 gi|167848430|ref|ZP_02473938.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167896980|ref|ZP_02484382.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167905359|ref|ZP_02492564.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167921599|ref|ZP_02508690.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
 gi|217423225|ref|ZP_03454727.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226194550|ref|ZP_03790147.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237507990|ref|ZP_04520705.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313995|ref|ZP_04813012.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254176241|ref|ZP_04882899.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|254189375|ref|ZP_04895885.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254195237|ref|ZP_04901665.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|254200901|ref|ZP_04907266.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|254204867|ref|ZP_04911220.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|254262915|ref|ZP_04953780.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254299430|ref|ZP_04966879.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|254358982|ref|ZP_04975254.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|52422986|gb|AAU46556.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 23344]
 gi|126224896|gb|ABN88401.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
 gi|126231510|gb|ABN94923.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|126239118|gb|ABO02230.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10247]
 gi|134244398|gb|EBA44504.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|147748513|gb|EDK55588.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|147754453|gb|EDK61517.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|148028169|gb|EDK86129.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|156105362|gb|ABU49180.1| BpsR4 [Burkholderia pseudomallei]
 gi|157809517|gb|EDO86687.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|157937053|gb|EDO92723.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160697283|gb|EDP87253.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|169651984|gb|EDS84677.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|217394133|gb|EEC34153.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225933378|gb|EEH29368.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|235000195|gb|EEP49619.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238524705|gb|EEP88137.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|242137234|gb|EES23637.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|243060902|gb|EES43088.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|254213917|gb|EET03302.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|261827048|gb|ABM99276.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
          Length = 238

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 19/231 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
              ++   C  S   +       +G  +F   R  +         +   +P +       
Sbjct: 10  FNEILNATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPAEWRLRYDA 67

Query: 93  SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143
           ++      V+Q       P ++H      +    M +           S         I 
Sbjct: 68  ADYLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 127

Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
           ++ +            ILR       L +   A M +  D    +    +LT RE E L 
Sbjct: 128 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 187

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 188 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|7385149|gb|AAF61719.1|AF232769_1 acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas fluorescens]
          Length = 241

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 33/239 (13%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHF----------------LLVRWDL-----F 69
           DL   M+ L  +      +    +Y+G   +                +   +       +
Sbjct: 13  DLRMEMLKLQESAQVFALLEREVQYLGFDFYAYGIRHSIPFTRPKTEIYGSYPQPWMERY 72

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--TLPENITPPAGMD 127
           Q+Q   +I  S     ++  +  +E   + +VL     +         L    T P    
Sbjct: 73  QQQNYAAIDPS-----ILNGLRSTEMVVWNDVLFGKGSVLWGEAQDWGLRVGATVPIRTP 127

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +   S+     R       +    R ++R RL  I  LAA + +     +       EL+
Sbjct: 128 DGALSVLSVARR----NTAISAVEREVIRLRLRCIIELAAGRLSELGHSNTQSDPQ-ELS 182

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L W ++GK+S EIA+ILGIS NTVN ++  I +K     ++ A AYA    ++
Sbjct: 183 AREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVLGLI 241


>gi|16129863|ref|NP_416426.1| quorum-sensing transcriptional activator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89108751|ref|AP_002531.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. W3110]
 gi|170081564|ref|YP_001730884.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901125|ref|YP_002926921.1| DNA-binding transcriptional activator [Escherichia coli BW2952]
 gi|253773131|ref|YP_003035962.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|2506570|sp|P07026|SDIA_ECOLI RecName: Full=Regulatory protein SdiA
 gi|1736575|dbj|BAA15736.1| DNA-binding transcriptional activator [Escherichia coli str. K12
           substr. W3110]
 gi|1788224|gb|AAC74983.1| quorum-sensing transcriptional activator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169889399|gb|ACB03106.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. DH10B]
 gi|238860878|gb|ACR62876.1| DNA-binding transcriptional activator [Escherichia coli BW2952]
 gi|253324175|gb|ACT28777.1| transcriptional regulator, LuxR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448967|gb|ACX39389.1| transcriptional regulator, LuxR family [Escherichia coli DH1]
 gi|315136553|dbj|BAJ43712.1| DNA-binding transcriptional activator SdiA [Escherichia coli DH1]
          Length = 240

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|271964817|ref|YP_003339013.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507992|gb|ACZ86270.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 11/214 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++ +D        + AL E VG +    V  +    ++  ++V S  P  +V  + +  
Sbjct: 20  RVLLVDDHPLLRHGLRALLEQVGGAE---VVGEAGDGEEAIALVLSLNPDVVVMDLVMPG 76

Query: 95  K---DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
               +    ++ R  +L   V     ++ +  A +          V +   G   +    
Sbjct: 77  VTGIEATRTLIDRRPDLGVLVLTMSEDDASVFAALRAGARGY---VLKGADGNDFIAAVR 133

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            +   + ++   +  A +   F +     G   ELT RE E L  ++ GK++ EIA  L 
Sbjct: 134 AVARGEAVYGPAV--ARRIRRFLTTGPESGPFPELTQREREILDLLASGKSNAEIARRLF 191

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S+ TV N++ SI  K     R+ A+  A R  +
Sbjct: 192 LSQKTVKNHLTSIFAKLQVADRTQAVVRARRAGL 225


>gi|320191891|gb|EFW66538.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. EC1212]
          Length = 240

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|312973873|ref|ZP_07788045.1| regulatory protein sdiA [Escherichia coli 1827-70]
 gi|310332468|gb|EFP99703.1| regulatory protein sdiA [Escherichia coli 1827-70]
          Length = 221

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           H L   +T    + NR              + +L  + ++ ++  L    L+A  + N  
Sbjct: 94  HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 150

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     +
Sbjct: 151 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 208

Query: 234 SGAIAYAVRNNIV 246
           +    YA    ++
Sbjct: 209 TQVACYAAATGLI 221


>gi|215487121|ref|YP_002329552.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215265193|emb|CAS09582.1| DNA-binding transcriptional activator [Escherichia coli O127:H6
           str. E2348/69]
          Length = 240

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTSEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|222055510|ref|YP_002537872.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
 gi|221564799|gb|ACM20771.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
          Length = 248

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 43/64 (67%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +FEL+ RE+E L W+ +GK+S +I+VIL IS  TV  ++ +IM K    +R+ A+A A+ 
Sbjct: 182 NFELSKREIEVLNWVKKGKSSWDISVILAISVRTVKFHVENIMVKLNAVSRTHAVAIALS 241

Query: 243 NNIV 246
             ++
Sbjct: 242 AGVI 245


>gi|158336238|ref|YP_001517412.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158306479|gb|ABW28096.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 220

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 15/204 (7%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           A+T+Y+ A  + ++     ++     +V    P  LV  + + + D Y     V Q+P  
Sbjct: 17  AVTDYLEAVGYTVISAATGKQAW--QLVQQYRPHLLVTDIRMPQMDGYELVKLVRQQPAF 74

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV +        E I       + Y +  F++  +   +  L  + +I+  +     
Sbjct: 75  RLLPVIYLTECSQTQERIRGYKLGCDAYLAKPFNLEELAAVIRNLLDRVQIVQTE----- 129

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
               +      +  D       +LT RE + L  + EG ++ +I   L +S  TV  Y++
Sbjct: 130 IQAVSQATPSREPVDTALINALDLTQREQQVLRLLMEGLSNAQIGEQLHLSSRTVEKYVS 189

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            +++KT T  R+  + +A+ +N++
Sbjct: 190 KLLQKTETSNRAEIVRFAMEHNLL 213


>gi|320198610|gb|EFW73210.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           EC4100B]
          Length = 240

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|256022426|ref|ZP_05436291.1| DNA-binding transcriptional activator SdiA [Escherichia sp.
           4_1_40B]
          Length = 240

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|9297072|sp|P74946|VANR_VIBAN RecName: Full=Transcriptional activator protein vanR
 gi|1568660|gb|AAC45213.1| VanR [Listonella anguillarum]
          Length = 240

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 17/231 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+     +         +  L   +G   FL         +  +++V+ ++P    +   
Sbjct: 7   LIQENQQITSHDDLENVLNGLNNLIGHEFFLFGLSFQPTLKTSETLVTDNYPNSWRQQYD 66

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPE----------NITPPAGMDNRYCSLTFDVARIR 141
            S       +++     F P+     +                G+   + S+     R  
Sbjct: 67  ESGFMHIDPIVKYSITNFLPIRWDDAKRVNNDGRVIFEEARCNGLKAGF-SIPIHGLRGE 125

Query: 142 IGLMLLFPKGRI---ILRDRLWEIGLLAAYQANMF---KSYDVHWGKDFELTGREVECLT 195
            G++           + +  +    L+    A+       Y         LT REV+CL 
Sbjct: 126 FGMISFATSDTKSYDLNQQSIHTSQLIVPLLAHNIGNITRYHKDAKPRAVLTAREVQCLA 185

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGK++ EIA I+  S  TV  + ++  +K     R  AI  A+    +
Sbjct: 186 WAAEGKSAWEIATIINTSERTVKFHFSNACKKLGATNRYQAITKAILGGYI 236


>gi|53721347|ref|YP_110332.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52211761|emb|CAH37760.1| putative LuxR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
          Length = 234

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 19/231 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
              ++   C  S   +       +G  +F   R  +         +   +P +       
Sbjct: 6   FNEILNATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPAEWRLRYDA 63

Query: 93  SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143
           ++      V+Q       P ++H      +    M +           S         I 
Sbjct: 64  ADYLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 123

Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
           ++ +            ILR       L +   A M +  D    +    +LT RE E L 
Sbjct: 124 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 184 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 234


>gi|188491931|ref|ZP_02999201.1| regulatory protein SdiA [Escherichia coli 53638]
 gi|260855896|ref|YP_003229787.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O26:H11 str. 11368]
 gi|331653323|ref|ZP_08354328.1| regulatory protein SdiA [Escherichia coli M718]
 gi|188487130|gb|EDU62233.1| regulatory protein SdiA [Escherichia coli 53638]
 gi|257754545|dbj|BAI26047.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O26:H11 str. 11368]
 gi|315617861|gb|EFU98459.1| regulatory protein sdiA [Escherichia coli 3431]
 gi|323152751|gb|EFZ39023.1| regulatory protein sdiA [Escherichia coli EPECa14]
 gi|331049421|gb|EGI21493.1| regulatory protein SdiA [Escherichia coli M718]
          Length = 240

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|320652407|gb|EFX20705.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H- str. H 2687]
          Length = 240

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|320641764|gb|EFX11152.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. G5101]
          Length = 240

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|207722200|ref|YP_002252637.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2]
 gi|206587375|emb|CAQ17958.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2]
          Length = 459

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190
           A    GL+ L      +    L  + +   + AN+  +         +    +  LT RE
Sbjct: 344 AHGAFGLLTLARHADPLTAAELGRLSIATHWLANLAHTLMSPFLVPKLVPESNAVLTARE 403

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 404 REVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 459


>gi|84498193|ref|ZP_00996990.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381693|gb|EAP97576.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 202

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 6/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           VR    S  +    + ++       +     +     A +    + Y        +I   
Sbjct: 39  VRMPGNSGIEACTAIKEKAPRTKILILTASDDESDLFAAIKAGASGYLLKDLPTEQIAES 98

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      +I         L+A + + +             LT RE+E L  ++ GK +
Sbjct: 99  VRMAHTGQSMIPP--HMASQLIAEF-SRLSNEPPKEATAGPRLTERELEVLGLVARGKAN 155

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS NTV N++ +I+ K    +R  A  YA+R N++
Sbjct: 156 KEIATQLFISENTVKNHVRNILEKLQLHSRVEAALYAMRRNLI 198


>gi|170683439|ref|YP_001743327.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           SMS-3-5]
 gi|256017886|ref|ZP_05431751.1| DNA-binding transcriptional activator SdiA [Shigella sp. D9]
 gi|307314177|ref|ZP_07593787.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|309795974|ref|ZP_07690387.1| autoinducer binding domain protein [Escherichia coli MS 145-7]
 gi|170521157|gb|ACB19335.1| regulatory protein SdiA [Escherichia coli SMS-3-5]
 gi|306906146|gb|EFN36664.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|308120424|gb|EFO57686.1| autoinducer binding domain protein [Escherichia coli MS 145-7]
 gi|315061216|gb|ADT75543.1| DNA-binding transcriptional activator [Escherichia coli W]
 gi|323378207|gb|ADX50475.1| transcriptional regulator, LuxR family [Escherichia coli KO11]
 gi|323968333|gb|EGB63740.1| autoinducer binding domain-containing protein [Escherichia coli
           M863]
 gi|327253047|gb|EGE64701.1| regulatory protein sdiA [Escherichia coli STEC_7v]
          Length = 240

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|240145753|ref|ZP_04744354.1| nitrate/nitrite response regulator protein NarL [Roseburia
           intestinalis L1-82]
 gi|257202169|gb|EEV00454.1| nitrate/nitrite response regulator protein NarL [Roseburia
           intestinalis L1-82]
 gi|291536999|emb|CBL10111.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis M50/1]
          Length = 213

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y     + A ++  ++ +      I      +  L+    + M    D    K   LT
Sbjct: 100 NGYLLKDSESAELKKAILAVVNGEDYI------QPSLIPVLNSKMLDR-DSDSSKIESLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +S G  + EIA  L IS  TV N++++I +K     R+ A  +A+RNN++
Sbjct: 153 RRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRTQAAVFAIRNNLI 211


>gi|289641016|ref|ZP_06473185.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289509136|gb|EFD30066.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 234

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 2/161 (1%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           + R   +         +     +   +     +           Y      +  +   + 
Sbjct: 73  MPRRGGIDATSAIKQAVPSAKIVMLTISDEEGDLYDAIKAGAMGYLLKEISIDEVATAIR 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     +I         LL+ +   + K+          LT RE+E L  +++G  + +
Sbjct: 133 AVHGGQSLISPS--MASKLLSEFALMIKKADSRPQLPTPRLTDREMEVLRLVAKGLNNRD 190

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS NTV N+I +I+ K    +R  A+ YAVR  ++
Sbjct: 191 IAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 231


>gi|314934012|ref|ZP_07841377.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
 gi|313654162|gb|EFS17919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
          Length = 207

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 73/179 (40%), Gaps = 17/179 (9%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD--- 127
           L  +     P  ++  + + E +       + ++  ++   V  +  ++    + +D   
Sbjct: 40  LSYLEQHHLPDIVLLDLVMPEMNGIEITEVLKRQYPQVKVLVLTSYVDDEHVISAIDKGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +  ++   +  +    RII  +    I  +         S   H+    +L+
Sbjct: 100 DGYEMKDVEPQKLIETIHKVLNGERIIHPEAKSVIEAV---------SKKPHFTN--KLS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 149 KREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207


>gi|218695523|ref|YP_002403190.1| DNA-binding transcriptional activator SdiA [Escherichia coli 55989]
 gi|300904802|ref|ZP_07122630.1| autoinducer binding domain protein [Escherichia coli MS 84-1]
 gi|218352255|emb|CAU98011.1| DNA-binding transcriptional activator [Escherichia coli 55989]
 gi|300403316|gb|EFJ86854.1| autoinducer binding domain protein [Escherichia coli MS 84-1]
 gi|315257253|gb|EFU37221.1| autoinducer binding domain protein [Escherichia coli MS 85-1]
          Length = 240

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           H L   +T    + NR              + +L  + ++ ++  L    L+A  + N  
Sbjct: 113 HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 169

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     +
Sbjct: 170 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 227

Query: 234 SGAIAYAVRNNIV 246
           +    YA    ++
Sbjct: 228 TQVACYAAATGLI 240


>gi|150396769|ref|YP_001327236.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150028284|gb|ABR60401.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 246

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII-------- 154
           +R      P+F    E      G+     +L       R+ L+ +      +        
Sbjct: 95  RRRFPECEPLFVAAEE-----IGLSTEGVALPLPSPAGRMALLAISANMSPVEWSAYRRC 149

Query: 155 -LRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            LRD +L      A+   +   +  +   +D  LTGRE E LTW + GK+  EIA ILGI
Sbjct: 150 HLRDFQLAANLFHASMLEHSAMAGAMEDERDLRLTGRETEVLTWSAAGKSYWEIATILGI 209

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  ++ +  RK    + + A+A+AVR+ ++
Sbjct: 210 SERTVRFFMTNARRKLNVVSNTQAVAHAVRHALI 243


>gi|332278913|ref|ZP_08391326.1| regulatory protein sdiA [Shigella sp. D9]
 gi|332101265|gb|EGJ04611.1| regulatory protein sdiA [Shigella sp. D9]
          Length = 244

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 117 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 168

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 169 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 228

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 229 PNKTQVACYAAATGLI 244


>gi|301029367|ref|ZP_07192464.1| autoinducer binding domain protein [Escherichia coli MS 196-1]
 gi|301645566|ref|ZP_07245495.1| autoinducer binding domain protein [Escherichia coli MS 146-1]
 gi|307138583|ref|ZP_07497939.1| DNA-binding transcriptional activator SdiA [Escherichia coli H736]
 gi|331642538|ref|ZP_08343673.1| regulatory protein SdiA [Escherichia coli H736]
 gi|299877793|gb|EFI86004.1| autoinducer binding domain protein [Escherichia coli MS 196-1]
 gi|301076098|gb|EFK90904.1| autoinducer binding domain protein [Escherichia coli MS 146-1]
 gi|323186308|gb|EFZ71658.1| regulatory protein sdiA [Escherichia coli 1357]
 gi|323948203|gb|EGB44191.1| autoinducer binding domain-containing protein [Escherichia coli
           H120]
 gi|324017952|gb|EGB87171.1| autoinducer binding domain protein [Escherichia coli MS 117-3]
 gi|324118970|gb|EGC12859.1| autoinducer binding domain-containing protein [Escherichia coli
           E1167]
 gi|331039336|gb|EGI11556.1| regulatory protein SdiA [Escherichia coli H736]
          Length = 240

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 113 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 164

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 165 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 225 PNKTQVACYAAATGLI 240


>gi|300951540|ref|ZP_07165374.1| autoinducer binding domain protein [Escherichia coli MS 116-1]
 gi|300956569|ref|ZP_07168849.1| autoinducer binding domain protein [Escherichia coli MS 175-1]
 gi|300316616|gb|EFJ66400.1| autoinducer binding domain protein [Escherichia coli MS 175-1]
 gi|300449215|gb|EFK12835.1| autoinducer binding domain protein [Escherichia coli MS 116-1]
 gi|323940421|gb|EGB36612.1| autoinducer binding domain-containing protein [Escherichia coli
           E482]
 gi|332089650|gb|EGI94752.1| regulatory protein sdiA [Shigella boydii 5216-82]
          Length = 240

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           H L   +T    + NR              + +L  + ++ ++  L    L+A  + N  
Sbjct: 113 HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 169

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     +
Sbjct: 170 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 227

Query: 234 SGAIAYAVRNNIV 246
           +    YA    ++
Sbjct: 228 TQVACYAAATGLI 240


>gi|322381417|ref|ZP_08055416.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154644|gb|EFX46919.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 208

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +A    N F+          +LT RE+E L  I+ GK++ E+A  L I   TV  ++ 
Sbjct: 124 SQVATKIMNRFRQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVT 183

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++++K   + R+ A  YA ++ IV
Sbjct: 184 NVLQKLGVEDRTQAAIYAFKHGIV 207


>gi|293415226|ref|ZP_06657869.1| regulatory protein sdiA [Escherichia coli B185]
 gi|291432874|gb|EFF05853.1| regulatory protein sdiA [Escherichia coli B185]
          Length = 244

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 117 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 168

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 169 LMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 228

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 229 PNKTQVACYAAATGLI 244


>gi|209919338|ref|YP_002293422.1| DNA-binding transcriptional activator SdiA [Escherichia coli SE11]
 gi|293446298|ref|ZP_06662720.1| regulatory protein sdiA [Escherichia coli B088]
 gi|209912597|dbj|BAG77671.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           SE11]
 gi|291323128|gb|EFE62556.1| regulatory protein sdiA [Escherichia coli B088]
          Length = 244

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 117 HGLRRGVTQYLMLPNRALGF--------LSFSRCSAREIPILSDELQLKMQLLVRESLMA 168

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 169 LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 228

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 229 PNKTQVACYAAATGLI 244


>gi|229541561|ref|ZP_04430621.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229325981|gb|EEN91656.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 227

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-- 169
           V H L    T     +    +L   V  +  G   L PK   I  + + E   L+     
Sbjct: 91  VTHALKSGATGYLLKEMDSDALIEAVKVVAEGGSYLHPK---ITHNLVEEFRKLSNRYTP 147

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
              ++           LT RE E L  +++GK++  I   L IS  TV N++++I++K  
Sbjct: 148 GGTYQQPPAVVPPLHLLTPRECEVLQLLADGKSNRAIGDALYISEKTVKNHVSNILQKLK 207

Query: 230 TKTRSGAIAYAVRNN 244
            K R+ A+  A++N 
Sbjct: 208 VKDRTQAVVTAIKNG 222


>gi|52082083|ref|YP_080874.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52787473|ref|YP_093302.1| DegU [Bacillus licheniformis ATCC 14580]
 gi|319647951|ref|ZP_08002169.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2]
 gi|52005294|gb|AAU25236.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52349975|gb|AAU42609.1| DegU [Bacillus licheniformis ATCC 14580]
 gi|56310547|emb|CAE82205.1| two-component response regulator [Bacillus licheniformis]
 gi|106880136|emb|CAJ70739.1| two component response regulator [Bacillus licheniformis]
 gi|106880142|emb|CAJ70744.1| two component response regulator [Bacillus licheniformis]
 gi|317390292|gb|EFV71101.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2]
          Length = 229

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L          +    +L   V  +  G   L PK   +  + + E   LA    +
Sbjct: 92  VTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK---VTHNLVNEFRRLATSGVS 148

Query: 172 MFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
               ++V+      L   T RE E L  +++GK++  I   L IS  TV N++++I++K 
Sbjct: 149 SHAQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKM 208

Query: 229 ATKTRSGAIAYAVRNN 244
               R+ A+  A++N 
Sbjct: 209 NVNDRTQAVVVAIKNG 224


>gi|167463122|ref|ZP_02328211.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 214

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +A    N F+          +LT RE+E L  I+ GK++ E+A  L I   TV  ++ 
Sbjct: 130 SQVATKIMNRFRQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVT 189

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++++K   + R+ A  YA ++ IV
Sbjct: 190 NVLQKLGVEDRTQAAIYAFKHGIV 213


>gi|313902397|ref|ZP_07835800.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467328|gb|EFR62839.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 218

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 1/156 (0%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            M+  E  +        T++     H   E +            L     R  +  + L 
Sbjct: 60  DMSGIEATRQIRAASASTQVLVLTIHDQEEYLLEAIAAGASGFVLKDVEPRTLVEAVRLC 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +G   +   L    +L        +   +  G    LT RE E L  ++EG ++ EI  
Sbjct: 120 CRGEGYVHPTL-SARVLNLGTRRRERWTPLGGGIPEPLTRREFEVLQLVAEGVSNREIGQ 178

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L IS  TV N+I SI RK     R+ A+ +A+R  
Sbjct: 179 RLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREG 214


>gi|329941415|ref|ZP_08290694.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299946|gb|EGG43845.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 226

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 11/225 (4%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSS 80
           P       R++  D      M +  + +       VG         DL ++   D +V  
Sbjct: 5   PPSGSAPTRVLVCDDQALIRMGLVTIIDAQPDMEVVGECGDGRTGVDLARKLDPDVVVM- 63

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           D    ++  +  +       V      L    F+             + +        R+
Sbjct: 64  DIRMPVLDGLEATRLLAGAGVAHPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPDRL 123

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             G+  +     ++  D   +  L+  Y   +  +      +D  LT RE+E L  I++G
Sbjct: 124 LHGIRTVAMGAALLDPDVTRQ--LVGRYATRIRPTDGAP--EDIPLTPRELEVLRLIADG 179

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA R+ +
Sbjct: 180 LSNSEIAATLVISQETVKTFVSRILTKLNLRDRVQAVVYAFRHGL 224


>gi|32472133|ref|NP_865127.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH
           1]
 gi|32397505|emb|CAD72811.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH
           1]
 gi|327539236|gb|EGF25859.1| two-component system response regulator [Rhodopirellula baltica
           WH47]
          Length = 210

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   T  V+R+   L L F   +   R+ L  +            +  ++   D  LT 
Sbjct: 100 GYILKTAPVSRLIEALNLAFDGQQSWTREELRRV-------TGALATPRMNQDIDVPLTQ 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  ++ G T+ EIA +LGIS  TV  ++  I+RK     R+ A  +AVR N+V
Sbjct: 153 RESEVLRQMALGLTNKEIAKMLGISYETVKEHVQHILRKLGVSDRTQAAVWAVRKNLV 210


>gi|317122051|ref|YP_004102054.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315592031|gb|ADU51327.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 218

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 1/156 (0%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            M+  E  +        T++     H   E +            L     R  +  + L 
Sbjct: 60  DMSGIEATREIRSASASTQVLVLTIHDQEEYLLEAIAAGASGFVLKDVEPRTLVEAVRLC 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +G   +   L    +L        +   +  G    LT RE E L  ++EG ++ EI  
Sbjct: 120 CRGEGYVHPTL-SARVLNLGTRRRERWTPLGGGIPEPLTRREFEVLQLVAEGVSNREIGQ 178

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L IS  TV N+I SI RK     R+ A+ +A+R  
Sbjct: 179 RLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREG 214


>gi|307328232|ref|ZP_07607410.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886066|gb|EFN17074.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 219

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 6/172 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLT 134
            +V  D    ++  +  +        +  P ++       L E +        + +    
Sbjct: 52  EVVVMDVRMPVLDGIEATRLLA-GAGVPHPVKVLVVTTFNLDEYVYEALRAGASGFLLKD 110

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              +++  G+  +     ++  +   +  L+  Y A +  +      +D  LT RE+E L
Sbjct: 111 APPSQLLHGIRTVATGAALLDPEVTRQ--LVGTYAARIRPAEGPP--RDIPLTPRELEVL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I+ G ++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA R  +V
Sbjct: 167 RLIANGLSNSEIAATLVISQETVKTFVSRILAKLGLRDRVQAVVYAYRQGLV 218


>gi|138896712|ref|YP_001127165.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249414|ref|ZP_03148112.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
 gi|134268225|gb|ABO68420.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211171|gb|EDY05932.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
          Length = 225

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 21/227 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R+  +D    +   +  + E+ G   F +V       + L  IV    P  ++  + 
Sbjct: 1   MTTRIAIIDDHQLFREGIKRILEFDG--DFEVVAEGSDGREALS-IVEEHRPDLVLMDIN 57

Query: 92  LSEKDKYYNVLQRPTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDV 137
           + + +      ++  E +                V   L    T     +    +L   V
Sbjct: 58  MPDTNG-VEATKQLIETYPDTKVVVLSIHDDENYVMRALQTGATGYLLKEMDADTLIEAV 116

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  G   L PK   +  + + E   L     +              LT RE E L  +
Sbjct: 117 RIVAEGGSYLHPK---VTHNLIREYRRLTTETNSNVMVQQEVRRPLHLLTRRECEVLQLL 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++GK++  I   L IS  TV N+++SI++K     R+ A+  A++N 
Sbjct: 174 ADGKSNRAIGETLYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNG 220


>gi|302543091|ref|ZP_07295433.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460709|gb|EFL23802.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 219

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 5/182 (2%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              DL    + D +V  D    ++  +  +       V Q+   L    F+         
Sbjct: 41  AAVDLAGRLRPDVVVM-DVRMPVLDGIEATRLLAGAGVPQQVKVLVVTTFNLDEYVYEAL 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +       +++  G+  +     ++  +   +  L+  Y A +  +       D
Sbjct: 100 RAGASGFLLKDAPPSQLLHGIRTVATGAALLDPEVTRK--LVGTYAARIRPAAGTPH--D 155

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  I++G+++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA R 
Sbjct: 156 NPLTPRELEVLRLIADGRSNSEIAAALQISQETVKTFVSRILTKLDLRDRVQAVVYAYRQ 215

Query: 244 NI 245
            +
Sbjct: 216 GL 217


>gi|220933015|ref|YP_002509923.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
 gi|219994325|gb|ACL70928.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
          Length = 211

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE E L  +++G ++ +IA  L IS  TV N++++I+RK +   R+ A+  A++  
Sbjct: 147 ELSSREQEVLELLAQGMSNKQIAQELFISEKTVKNHVSNILRKLSVNDRTQAVIVALKRG 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|323139047|ref|ZP_08074106.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC
           49242]
 gi|322395707|gb|EFX98249.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC
           49242]
          Length = 261

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 83/249 (33%), Gaps = 19/249 (7%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA----SHFLLVRWDLFQ 70
                    S +    +++ R+  +         +  +T  +G     +  L    +   
Sbjct: 14  AKPIANWLASRVDATLEIIRRLDSVATADELGDSLLEITSPLGVEAIVAGVLPSSANHHM 73

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---- 126
           +   +      WP  L R  AL++      +L    +    +F                 
Sbjct: 74  DHGDEKT-PGHWPALLTRE-ALAQNKLQSELLIDLEKQTTHIFTRDAATGEASHLRFVYA 131

Query: 127 -DNRYCS------LTFDVARIRIGLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSYD 177
            DN   +      + F +  +          G  + RD   +  +  +A Y        D
Sbjct: 132 RDNDAEAWPDGERIVFPIVTVADMQCGFAFLGENLSRDETAMEILSFIANYAFARMVKVD 191

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  +LT R+ E L W + GKT  EIA IL +S++TV+ Y+           R+ AI
Sbjct: 192 RMCKSKPKLTDRQSEVLKWAALGKTDWEIAAILDVSQHTVDKYMRQSKEALNAVNRTAAI 251

Query: 238 AYAVRNNIV 246
             A+R  ++
Sbjct: 252 VLAMRYGLI 260


>gi|157161388|ref|YP_001458706.1| DNA-binding transcriptional activator SdiA [Escherichia coli HS]
 gi|170019746|ref|YP_001724700.1| DNA-binding transcriptional activator SdiA [Escherichia coli ATCC
           8739]
 gi|218689909|ref|YP_002398121.1| DNA-binding transcriptional activator SdiA [Escherichia coli ED1a]
 gi|218705411|ref|YP_002412930.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           UMN026]
 gi|300899169|ref|ZP_07117448.1| autoinducer binding domain protein [Escherichia coli MS 198-1]
 gi|300928947|ref|ZP_07144451.1| autoinducer binding domain protein [Escherichia coli MS 187-1]
 gi|331673434|ref|ZP_08374202.1| regulatory protein SdiA [Escherichia coli TA280]
 gi|331683468|ref|ZP_08384069.1| regulatory protein SdiA [Escherichia coli H299]
 gi|157067068|gb|ABV06323.1| regulatory protein SdiA [Escherichia coli HS]
 gi|169754674|gb|ACA77373.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739]
 gi|218427473|emb|CAR08247.1| DNA-binding transcriptional activator [Escherichia coli ED1a]
 gi|218432508|emb|CAR13401.1| DNA-binding transcriptional activator [Escherichia coli UMN026]
 gi|300357228|gb|EFJ73098.1| autoinducer binding domain protein [Escherichia coli MS 198-1]
 gi|300463101|gb|EFK26594.1| autoinducer binding domain protein [Escherichia coli MS 187-1]
 gi|331069632|gb|EGI41019.1| regulatory protein SdiA [Escherichia coli TA280]
 gi|331079683|gb|EGI50880.1| regulatory protein SdiA [Escherichia coli H299]
          Length = 240

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           H L   +T    + NR              + +L  + ++ ++  L    L+A  + N  
Sbjct: 113 HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 169

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     +
Sbjct: 170 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 227

Query: 234 SGAIAYAVRNNIV 246
           +    YA    ++
Sbjct: 228 TQVACYAAATGLI 240


>gi|161502928|ref|YP_001570040.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864275|gb|ABX20898.1| hypothetical protein SARI_00987 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 251

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 27/238 (11%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 21  RRAMLLRFQEMATAEGVYTELQYQTQRLEFDYYSLCVRHPVPFTRPKIS--LRTTYPQAW 78

Query: 87  V------RCMALSEKDKYYNVLQRPTELFCPVFH------------TLPENITPPAGMDN 128
           V        +A+    K  N  +        +FH             L   +T    + N
Sbjct: 79  VTHYQAENYIAIDPVLKPENFREGHLHWDNVLFHEAQAMWDAAQRFGLRRGVTQSVMLPN 138

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
           R       V+R  +G    F    + LR +L     L+A         D+    +   + 
Sbjct: 139 RAVGF-LSVSRGSLGCSS-FTYDEVELRLQLLARESLSAL---TRLEDDIVMVPEMRFSK 193

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 194 REKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 251


>gi|222148404|ref|YP_002549361.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|68449749|gb|AAY97861.1| AvsR [Agrobacterium vitis]
 gi|221735392|gb|ACM36355.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 246

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-FQEQKLDSIVSSDWPFD--L 86
           +D L R+  +   +S  + M A     GA   L+ R+   F +Q  D I+  D P    +
Sbjct: 23  TDFLNRL-QISYNLSGCLYMDASITSAGA---LVYRYGHTFDKQAKDPILMLDAPVLRNV 78

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  ++ + +    + L + +E    +   L +   P   +     S+    A + I    
Sbjct: 79  LSQLSRAMEPVDMHDLAQLSEEGLLLRSKLRDLPLPRQAVSYPLLSVDGRGAILAIASNA 138

Query: 147 LFPKGRIILRDRLWEIGLLAA-YQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSD 204
              + R   R    +I LLA  + A + K  D    G    LT RE E L W + GK+  
Sbjct: 139 CEEEWRRFRRCHDRDIHLLAGKFHAGLVKRCDGTRLGGVPTLTRREQETLRWTAAGKSYW 198

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E AVILGIS  TV  ++A+   K    + + A+A A++  ++
Sbjct: 199 ETAVILGISERTVRYFMANARTKLDAVSNTQAVAKALQRGLI 240


>gi|301018234|ref|ZP_07182749.1| autoinducer binding domain protein [Escherichia coli MS 69-1]
 gi|300399821|gb|EFJ83359.1| autoinducer binding domain protein [Escherichia coli MS 69-1]
          Length = 240

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           H L   +T    + NR              + +L  + ++ ++  L    L+A  + N  
Sbjct: 113 HGLRRGVTQYLMLPNRALGFLSFSRSSVREIPILSDELQLKMQL-LVRESLMALMRLN-- 169

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     +
Sbjct: 170 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 227

Query: 234 SGAIAYAVRNNIV 246
           +    YA    ++
Sbjct: 228 TQVACYAAATGLI 240


>gi|295700193|ref|YP_003608086.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439406|gb|ADG18575.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
          Length = 234

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 21/233 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++       W   +  L E  G    L+        +  D+ + S +     +    
Sbjct: 1   MAPLLNAADEAEWFGVITGLAETWGFDRILVAMLPRPTMRLEDAYLRSTYAPAWRQTYDE 60

Query: 93  SEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVARIR 141
                    +        P+             +L E             +L        
Sbjct: 61  QGMVHIDPTVAHCLSRSAPLIWTPEIFATPAQQSLYEEARSYGLGAG--VTLPIHGPNQE 118

Query: 142 IGLMLLFPKGRIIL------RDRLWEIGLLAAYQANMFKSY-DVHWGKDF-ELTGREVEC 193
            G+M      +            L  + LL     +  K + D H      +LT RE EC
Sbjct: 119 AGMMCFVNDDKPADGFRRHVNAALPNLVLLRDLVIDTSKQHLDSHAQSLMPKLTPREREC 178

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 179 LKWTARGKSTWEISHILSCSEAVVNFHMKNIRAKFGVNSRRAAAVIAAQLGLI 231


>gi|166362770|ref|YP_001655043.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|159027464|emb|CAO89429.1| ycf29 [Microcystis aeruginosa PCC 7806]
 gi|166085143|dbj|BAF99850.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 218

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 91/207 (43%), Gaps = 17/207 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           A+ +Y+  + + +V      E    +++ +  P  LV  + +   D Y     V Q+P  
Sbjct: 17  AVKDYLELAGYSVVAASNGLEAL--NLLDTYHPHLLVSDIKMPRLDGYSLVTKVRQQPEF 74

Query: 108 LFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV       +  E I       + Y    F++  ++  +  L  + +++  +R ++ 
Sbjct: 75  RLLPVIFLTERGSTEERIRGYQVGCDIYLPKPFEMEELKAVIRNLLERSQMVQSERQYQK 134

Query: 163 GLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
                      K+ DV       DF+LT RE E L  ++ G ++ EI   L +S  T+  
Sbjct: 135 ----LKPEESPKTRDVLTSSLQDDFKLTNREREVLEHLARGLSNSEIGQKLHLSSRTIEK 190

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           Y++S++RKT T  R+  + +++ + ++
Sbjct: 191 YVSSLLRKTTTNNRAELVRFSLEHRLI 217


>gi|293405402|ref|ZP_06649394.1| regulatory protein sdiA [Escherichia coli FVEC1412]
 gi|298381046|ref|ZP_06990645.1| regulatory protein sdiA [Escherichia coli FVEC1302]
 gi|291427610|gb|EFF00637.1| regulatory protein sdiA [Escherichia coli FVEC1412]
 gi|298278488|gb|EFI20002.1| regulatory protein sdiA [Escherichia coli FVEC1302]
          Length = 244

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           H L   +T    + NR              + +L  + ++ ++  L    L+A  + N  
Sbjct: 117 HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 173

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     +
Sbjct: 174 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNK 231

Query: 234 SGAIAYAVRNNIV 246
           +    YA    ++
Sbjct: 232 TQVACYAAATGLI 244


>gi|160895667|ref|YP_001561249.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160361251|gb|ABX32864.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 339

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
              L E  +L +++A    +      +   LT RE E L+W+S+GKT+ +IA ILG+S  
Sbjct: 248 ASGLGESMVLLSHEAPQTPA--ARRLQQVALTPRETEVLSWLSKGKTNRDIADILGMSPR 305

Query: 216 TVNNYIASIMRKTATKTRSGAIAYA 240
           TVN ++  I  K   +TR+ A A A
Sbjct: 306 TVNKHLEHIFEKLGVETRTAAAAVA 330


>gi|121533453|ref|ZP_01665281.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
 gi|121308012|gb|EAX48926.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
          Length = 225

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 4/135 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +          D     L   +  +  G   ++P     L  RL +  +    +  
Sbjct: 91  VVEVIKAGAAGYLLKDVEPSMLVAAIRAVYEGESFIYPT----LAKRLLDETIRRGEKKK 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +       +  LT RE+E L  +++G ++ EIA  L +S  TV N++ +I RK    
Sbjct: 147 QESAVQPARRGEERLTYRELEVLQLVAQGLSNSEIAQKLYLSEKTVKNHLTNIFRKINVT 206

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+ YA+R+ IV
Sbjct: 207 DRTQALIYAIRHKIV 221


>gi|296156923|ref|ZP_06839760.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295892809|gb|EFG72590.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 234

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++       W   +  L E  G    L+        +  D+ V S +     R    
Sbjct: 1   MAPLLDAADEAEWFGAIAGLAETWGFDKLLIAMLPRPTIRLEDAYVRSTYSPIWRRTYDE 60

Query: 93  SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132
                    +        P+                     H L   +T P    N+   
Sbjct: 61  QGLVHIDPTVSHCATRATPLIWSPDIFTTASQQSMYEEARAHGLRAGVTLPIHGPNQEAG 120

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           +   V                +    L    ++   Q ++         K   LT RE E
Sbjct: 121 MMCFVNDSNPSDEFWRHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPK---LTPRERE 177

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 178 CLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLGLI 231


>gi|91779483|ref|YP_554691.1| LuxR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692143|gb|ABE35341.1| transcriptional regulator, LuxR family [Burkholderia xenovorans
           LB400]
          Length = 234

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++       W   +  L E  G    L+        +  D+ V S +     R    
Sbjct: 1   MAPLLNAADEAEWFGTIAGLVETWGFEKLLIAMLPRPTIRLEDAYVRSTYSPIWRRTYDE 60

Query: 93  SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132
                    +        P+                     H L   +T P    N+   
Sbjct: 61  QGLVHIDPTVSHCATRATPLIWSPDIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 120

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           +   V                +    L    ++   Q ++         K   LT RE E
Sbjct: 121 MMCFVNDSNPNDEFWQHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPK---LTPRERE 177

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 178 CLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLGLI 231


>gi|209518837|ref|ZP_03267650.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
 gi|209500722|gb|EEA00765.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
          Length = 269

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++       W   +  L+E  G    L+        +  D+ + S +     +    
Sbjct: 36  MAPLLDAANEAEWFGVITGLSETWGFDRILVAMLPRPTMRLEDAYLRSTYAPAWRQAYDE 95

Query: 93  SEKDKYYNVLQRPTEL-----------FCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +   +                   P   +L E              +        
Sbjct: 96  QGMVHFDPTVAHCLSRSGPLIWTPEIFATPAQQSLYEEARSYGLGAGVTLPIHGPNQEAG 155

Query: 142 IGLMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195
           +   +   K     R  +   L  + LL     +  + +     +    +LT RE ECL 
Sbjct: 156 MMCFVNDDKPSDGFRRHVNAALPNLVLLRDLVIDTSRQHLNSHAQTLLPKLTPRERECLK 215

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 216 WTARGKSTWEISHILSCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLGLI 266


>gi|261418763|ref|YP_003252445.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297531272|ref|YP_003672547.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319765579|ref|YP_004131080.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375220|gb|ACX77963.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|297254524|gb|ADI27970.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
 gi|317110445|gb|ADU92937.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 210

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   T   + I   +   F    +   +       +A      ++  +     + +LT R
Sbjct: 101 YLLKTSKASEIADAIRATFHGQSVFEPE-------VAGKVMRNYRKQEERLPHE-QLTSR 152

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  +++GKT+ E+A  L IS  TV  ++++I+ K   + R+ A+ YA R+ +V
Sbjct: 153 EMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209


>gi|218678644|ref|ZP_03526541.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 172

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 58/121 (47%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           +   +  +       R   ++L  + +   +  + ++ L A    +      +       
Sbjct: 51  LSGVFLFIPLFTPEGRRYCLVLSGERQEPDQGEIADMLLDAMRIFDKLYEEILTPEMSGR 110

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + W SEGKTS EIA+ILG+S +TVN++I +  RK     R   +A A+RN +
Sbjct: 111 LTQREQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 170

Query: 246 V 246
           V
Sbjct: 171 V 171


>gi|229062451|ref|ZP_04199766.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228716840|gb|EEL68528.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 186

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                L   ++      +       + Y        ++   + ++     +I   R+ + 
Sbjct: 48  PSCRVLVLTMYEHDEYLMAALRAGADGYLLKDSSSDQVVAAIRMVLQGDSVI-HPRMTK- 105

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+  +Q    +S       + ELT RE E L  +++G ++ EIA  L IS  TV  +I 
Sbjct: 106 KLITYHQQTKSESN------ENELTEREKEILFELAKGLSNKEIAEALYISDKTVKIHIN 159

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I RK   K+RS A+ YAVRN +V
Sbjct: 160 KIFRKLNVKSRSQAVIYAVRNQLV 183


>gi|220929282|ref|YP_002506191.1| LuxR family transcriptional regulator [Clostridium cellulolyticum
           H10]
 gi|219999610|gb|ACL76211.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulolyticum H10]
          Length = 216

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 41/77 (53%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + N    Y+        LT REVE L  I+EG  + EIA  L IS  TV N+I++I +K 
Sbjct: 138 EFNRVTLYEQDKSIINNLTNREVEVLKLIAEGMINKEIAKALYISEKTVKNHISNIFKKL 197

Query: 229 ATKTRSGAIAYAVRNNI 245
               R+ A  YA ++NI
Sbjct: 198 DVNDRTQAAIYAFKHNI 214


>gi|229163761|ref|ZP_04291706.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619728|gb|EEK76609.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 186

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      ++      + Y        ++   + ++     +I   R+ +  L
Sbjct: 50  CRVLVLTMYEHDEYLMSALRAGADGYLLKDSSSEQVVAAIRMVLQGDSVI-HPRMTK-KL 107

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q    +S       + ELT RE E L  + +G ++ EIA  L IS  TV  +I  I
Sbjct: 108 ITYHQQTKLESN------ENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 161

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK   K+RS A+ YAVRN +V
Sbjct: 162 FRKLNVKSRSQAVIYAVRNQLV 183


>gi|2495423|sp|Q51786|PHZR_PSEFL RecName: Full=Transcriptional activator protein phzR
 gi|1050313|gb|AAC18899.1| shows homology to luxR family; putative [Pseudomonas fluorescens]
          Length = 244

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 24/196 (12%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR--PTELFC 110
            +   A+++ L+      +  +     S  P      +  +  D +           L  
Sbjct: 71  LQRYQAANYALI------DPTVKHSKVSSAPILWSNELFRNCPDLWSEANDSSLCHGLAQ 124

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
           P F+T            +   SL             L P  +      L +I  L     
Sbjct: 125 PSFNTQGRVGVLSLARKDNAISLQ--------EFEALKPVTKAFAAAALEKISALETDV- 175

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                    +  D E + RE + L W ++GKTS+EI VI+G+  +TVN +  +I RK   
Sbjct: 176 -------RAFNTDVEFSERECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGA 228

Query: 231 KTRSGAIAYAVRNNIV 246
             R  A++YAV    +
Sbjct: 229 SNRVQAVSYAVALGYI 244


>gi|271965882|ref|YP_003340078.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509057|gb|ACZ87335.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 219

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D    ++  +  + +     V      L    F+             + +     
Sbjct: 52  DIVVMDVRMPVLDGIEATRRLAGAGVADPVKVLVVTTFNLDEYVYEALRAGASGFLLKDA 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A++  G+  +     ++  +   +  L+  Y A +  +       +  LT RE+E L 
Sbjct: 112 PPAQLLHGIRTVATGAALLAPEVTRQ--LVGRYAARIRPA--QATPAETALTPRELEVLR 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I++G ++ EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R  +V
Sbjct: 168 LIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218


>gi|297531388|ref|YP_003672663.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297254640|gb|ADI28086.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
          Length = 224

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    T     +    +L   V  +  G   L PK   +  + + E   L   +  
Sbjct: 91  VMRALQTGATGYLLKEMDADTLIEAVRIVAEGGSYLHPK---VTHNLIREYRRLTTEKGG 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                +V       LT RE E L  +++GK++  I   L IS  TV N+++SI++K    
Sbjct: 148 AVVKQEVRRPLHL-LTRRECEVLQLLADGKSNRAIGGALYISEKTVKNHVSSILQKLNVN 206

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A++N 
Sbjct: 207 DRTQAVVVAIKNG 219


>gi|47568085|ref|ZP_00238790.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|229042495|ref|ZP_04190240.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229108243|ref|ZP_04237865.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229194950|ref|ZP_04321731.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|47555239|gb|EAL13585.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|228588518|gb|EEK46555.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228675259|gb|EEL30481.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228726848|gb|EEL78060.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 213

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 7/156 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +   +    +      L   ++      +       + Y        ++   + +L+  
Sbjct: 62  GIEATELVKKIYPSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I   R+ +  L+  +Q  M          + ELT RE E L  + +G ++ EIA +L
Sbjct: 122 DSVI-HPRMTK-KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVL 174

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 175 YISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|19746547|ref|NP_607683.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21910902|ref|NP_665170.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|56808638|ref|ZP_00366364.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Streptococcus pyogenes
           M49 591]
 gi|209559762|ref|YP_002286234.1| Putative two-component response regulator [Streptococcus pyogenes
           NZ131]
 gi|306826950|ref|ZP_07460250.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
 gi|19748758|gb|AAL98182.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS8232]
 gi|21905108|gb|AAM79973.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|209540963|gb|ACI61539.1| Putative two-component response regulator [Streptococcus pyogenes
           NZ131]
 gi|304430968|gb|EFM33977.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 213

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    L   +    VL++  E    V  +  +N      +D             +  
Sbjct: 55  MDLVMP-ELGGVEATLEVLKKWKEAKVLVLTSYLDNEKIYPVIDAGA----------KGY 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++       I+   R    G LA         K++D H     ELT RE + L  +++G 
Sbjct: 104 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLAKGY 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208


>gi|229079676|ref|ZP_04212209.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228703516|gb|EEL55969.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 213

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 7/161 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L     +   +           L   ++      +       + Y        ++   + 
Sbjct: 57  LPEKNGIEATELVKKKYPSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSDQVVAAIR 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L+    +I   R+ +  L+  +Q  M          + ELT RE E L  + +G ++ E
Sbjct: 117 MLYRGDSVI-HPRMTK-KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKE 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 170 IAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|28895408|ref|NP_801758.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50914724|ref|YP_060696.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10394]
 gi|71904035|ref|YP_280838.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|94988957|ref|YP_597058.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94990957|ref|YP_599057.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10270]
 gi|94992850|ref|YP_600949.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS2096]
 gi|94994837|ref|YP_602935.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10750]
 gi|28810654|dbj|BAC63591.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50903798|gb|AAT87513.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10394]
 gi|71803130|gb|AAX72483.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|94542465|gb|ABF32514.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94544465|gb|ABF34513.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10270]
 gi|94546358|gb|ABF36405.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS2096]
 gi|94548345|gb|ABF38391.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10750]
          Length = 215

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    L   +    VL++  E    V  +  +N      +D             +  
Sbjct: 57  MDLVMP-ELGGVEATLEVLKKWKEAKVLVLTSYLDNEKIYPVIDAGA----------KGY 105

Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++       I+   R    G LA         K++D H     ELT RE + L  +++G 
Sbjct: 106 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLAKGY 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 166 DNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 210


>gi|21224466|ref|NP_630245.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256784341|ref|ZP_05522772.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289768220|ref|ZP_06527598.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|4007689|emb|CAA22374.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289698419|gb|EFD65848.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 219

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 5/180 (2%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           DL +E + D +V  D    ++  +  +       V      L    F+            
Sbjct: 44  DLARELRPDVVVM-DIRMPVLDGLEATRLLAGAGVAHPVKVLVVTTFNLDEYVYEALRAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +        R+  G+  +     ++  D      L+  Y A +  +      +D  L
Sbjct: 103 ASGFLLKDAPPDRLLHGIRTVAMGAALLDPDVTRR--LVGRYAARIRPAEGT--ARDIPL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I++G ++ EIA  L IS  TV  +++ I+ K   + R  A+ +A R+ +V
Sbjct: 159 TPRETEVLRLIADGLSNSEIAAALVISPETVKTFVSRILTKLDLRDRVQAVVFAYRHGLV 218


>gi|126658803|ref|ZP_01729947.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126619901|gb|EAZ90626.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 224

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 15/210 (7%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPT 106
            A+ +Y+    +  +     ++    S+V +  P  LV  + +  KD Y     + Q P 
Sbjct: 16  VAVKDYLEMHGYAAITAQNGEDAF--SLVQTYRPHLLVSDIKMPYKDGYTLVKELRQLPE 73

Query: 107 ELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
               PV       T  E I       + Y    F++  ++  +  L  + +II  +  + 
Sbjct: 74  FRLLPVVFLTECDTTEERIQGYQVGCDVYLPKPFEMEELKAVIRNLLERSQIIQSEWRFS 133

Query: 162 -----IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                       Q    K       +  +LT RE E L  ++ G ++ EI   L +S  T
Sbjct: 134 QEQSQTQKNLQQQQEAAKISIQAEMEFLDLTRRESEVLDLLTTGLSNGEIGQRLHLSPRT 193

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  Y++S++RKT T  R+  + +A+ +++V
Sbjct: 194 IEKYVSSLLRKTDTSNRAELVRFALDHHLV 223


>gi|138894116|ref|YP_001124569.1| DNA-binding response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250655|ref|ZP_03149344.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
 gi|134265629|gb|ABO65824.1| DNA-binding response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209874|gb|EDY04644.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
          Length = 210

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 17/136 (12%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170
           VF  L    T      ++   +   +     G  +L P+    ++++R  +   L     
Sbjct: 90  VFAALEAGATSYLLKTSKASEIADAIRATFHGQSVLEPEVAGKVMQNRRRQRARL----- 144

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                         +LT RE+E L  +++GKT+ E+A  L IS  TV  ++++I+ K   
Sbjct: 145 -----------PHEQLTSREMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGV 193

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+ A+ YA R+ +V
Sbjct: 194 QDRTQAVIYAFRHGLV 209


>gi|170693116|ref|ZP_02884277.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170142114|gb|EDT10281.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 255

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 73/234 (31%), Gaps = 23/234 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++      +W   +  L E  G    L+        +  D+ V S +     R    
Sbjct: 22  MAPLLDAADEAAWFGAVADLAETWGFDRLLIAMLPRPTIRLEDAYVRSTYAPAWRRTYDE 81

Query: 93  SEKDKYYNVLQRPTELFCPVF--------------------HTLPENITPPAGMDNRYCS 132
                    +        P+                     H L   +T P    N+   
Sbjct: 82  QGLVHIDPTVAHCATRSTPLVWSPEIFITAPQRSMYEEARAHGLRAGVTLPIHGPNQEAG 141

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           +   V               ++    L    ++   Q ++         K   LT RE E
Sbjct: 142 MMCFVNDANPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLHTHTQTLLPK---LTPRERE 198

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 199 CLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 252


>gi|311898779|dbj|BAJ31187.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 234

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L          D     +   VA +R G   L P+ ++ L +RL             
Sbjct: 95  FSALQAGARGFLTKDAGAEEIARAVADVRSGAAGLSPQVQLRLLERLAGPAAAPEPAPVA 154

Query: 173 FKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            ++      +      LT RE E L  I+ G ++ EIA  L +S  TV  +I ++  KTA
Sbjct: 155 TEAAPEAVRRPSLPDGLTQREAEVLALIAAGLSNAEIAERLFVSPATVKTHINNLFAKTA 214

Query: 230 TKTRSGAIAYAVRNNI 245
            + R+ A+AYA R+ I
Sbjct: 215 VRDRAQAVAYAFRHGI 230


>gi|328552560|gb|AEB23052.1| two-component response regulator (YhcY) [Bacillus amyloliquefaciens
           TA208]
 gi|328910960|gb|AEB62556.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 214

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 48/94 (51%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R +   R      +  +  N     D +  K ++LT RE + L  I++GK++ EIA  L 
Sbjct: 115 REVYSGRYRLSADIVPHVLNHMVQDDQNKEKYYQLTPREKDVLQEIAKGKSNKEIAASLF 174

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IS  TV  ++++++ K     R+ A  YAV+ NI
Sbjct: 175 ISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNI 208


>gi|229143361|ref|ZP_04271792.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228640168|gb|EEK96567.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
          Length = 213

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 7/156 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +   +    +      L   ++      +       + Y        ++   + +L+  
Sbjct: 62  GIEATELVKKIYPSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I   R+ +  L+  +Q  M          + ELT RE E L  + +G ++ EIA +L
Sbjct: 122 DSVI-HPRMTK-KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAKVL 174

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 175 YISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|167628890|ref|YP_001679389.1| transcriptional regulator, luxr family, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591630|gb|ABZ83378.1| transcriptional regulator, luxr family, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 214

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 9/147 (6%)

Query: 102 LQRPTELFCPVFHTLPEN--ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
            ++P      +     E+  I       + Y         +   ++ +   G ++    +
Sbjct: 73  REQPQTAILVLTAHEEEDQIIRLIEAGVDGYLLKDVSPETLYGAIVTVARGGSVLNPAIV 132

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            ++     +   +  S D       ELT RE E L  I++G T+ +IA  L IS  TV N
Sbjct: 133 QKVLAKRRFNRTVAHSGD-------ELTEREKEVLGLIAQGSTNADIASALFISEKTVKN 185

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I +I RK   K R+ A  YA++N +V
Sbjct: 186 HITNIFRKLQVKDRTQAALYAIKNRLV 212


>gi|163848189|ref|YP_001636233.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222526094|ref|YP_002570565.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163669478|gb|ABY35844.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449973|gb|ACM54239.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 228

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 10/181 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYN-----VLQRPTELFCPVFHTLPENITPPAG 125
           +Q    +V  D     V  + ++   K  +     VL  P +    V   +   +     
Sbjct: 46  DQVDPDLVLMDTDLPGVNGLEVARVIKRSHPHIAIVLFGPVQSGAFVVKAIRAGVAACVP 105

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
            +  +  L   + ++R G    +P   ++L     E+              D        
Sbjct: 106 PNIEFADLLGTLRQVRRGE---YPINDLVLAS--PEVAATVLEAFRQMVGDDDIQTIFSP 160

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G T+ EIA  L IS  TV N+I+SI+RK A   R+ A+ YA+R   
Sbjct: 161 LSARELEVLELVAAGHTNREIAARLDISNQTVKNHISSILRKLAVNDRTQAVVYAMRRGW 220

Query: 246 V 246
           +
Sbjct: 221 I 221


>gi|56418969|ref|YP_146287.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56378811|dbj|BAD74719.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 210

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   T   + I   +   F    +   +       +A      ++  +     + +LT R
Sbjct: 101 YLLKTSKASEIADAIRATFHGQSVFEPE-------VAGKVMRNYRKQEERLPHE-QLTSR 152

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  +++GKT+ E+A  L IS  TV  ++++I+ K   + R+ A+ YA R+ +V
Sbjct: 153 EMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209


>gi|197263477|ref|ZP_03163551.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197241732|gb|EDY24352.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 240

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 29/239 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   + + +P   
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKIS--LRTTYPQAW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V             VL +P        H   +++           +  F + R     ++
Sbjct: 68  VTHYQSENYFAIDPVL-KPENFRQGHLHW--DDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124

Query: 147 L-------------------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           L                   F    + LR +L     L+A         D+    +   +
Sbjct: 125 LPNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSAL---TRFEDDMVMAPEMRFS 181

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 182 KREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNPPNKTQIACYAAATGLI 240


>gi|139473330|ref|YP_001128045.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|134271576|emb|CAM29801.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
          Length = 213

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 15/166 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARI 140
            DLV    L   +    VL++  E    V  +  +N      +D     Y   T   A I
Sbjct: 55  MDLVMP-ELGGVEATLEVLKKWKEAKVLVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEI 113

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +      I  +                K++D H     ELT RE + L  +++G
Sbjct: 114 LNAIRKVLKGELAIETE-----------VDKKIKAHDQHPDLHEELTAREYDILHLLAKG 162

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 163 YDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208


>gi|187927560|ref|YP_001898047.1| LuxR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187724450|gb|ACD25615.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12J]
          Length = 253

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSD 204
            P+      D +  + +L A       +  D          LT RE ECL W + GKTS 
Sbjct: 150 APERSQRHTDAISGLAVLTALHLHEAVRRLDASMSNAPIPSLTSREKECLQWAAAGKTSW 209

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA IL +S  TV  +I +  +K     R  A+A A+   ++
Sbjct: 210 EIARILSVSERTVIFHIGNATKKLGATNRRQAVARAISLRLI 251


>gi|57864907|gb|AAW57081.1| 2-component response regulator [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 224

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 87/208 (41%), Gaps = 14/208 (6%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL---QRPTE 107
           A+ +Y+    + ++     QE    S++ +  P  L+  + + +KD Y  V    Q P  
Sbjct: 17  AVKDYLELYSYSVITAKNGQEAL--SLLVAYRPHLLISDIKMPQKDGYTLVRYIRQLPEF 74

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD----R 158
              PV          E I       + Y    F++  ++  +  L  + ++I  +    +
Sbjct: 75  RLLPVIFLTERDSTGERIQGYEVGCDVYLPKPFEMEELKAVVRNLLERTQMIQSELGFSK 134

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
               G      +   +  +         T REV+ L  ++ G ++ +I   L +S  TV 
Sbjct: 135 RKSFGKQKNNFSQETEDKNQSLANYLHFTPREVQVLNLLTTGLSNGDIGQKLHLSPRTVE 194

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            Y++S++RKT T  R+  + +A+ ++++
Sbjct: 195 KYVSSLLRKTETNNRAELVRFALDHHLI 222


>gi|15675498|ref|NP_269672.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|71911145|ref|YP_282695.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|13622694|gb|AAK34393.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|71853927|gb|AAZ51950.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
          Length = 213

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    L   +    VL++  E    V  +  +N      +D             +  
Sbjct: 55  MDLVMP-ELGGVEATLEVLKKWKEAKVLVLTSYLDNEKIYPVIDAGA----------KGY 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++       I+   R    G LA         K++D H     ELT RE + L  +++G 
Sbjct: 104 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLAKGY 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLEVGDRTQAVVYAFRHHLV 208


>gi|295696562|ref|YP_003589800.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295412164|gb|ADG06656.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 220

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 9/170 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +    K +  +   R   L   V     +         N Y     
Sbjct: 50  DLVLMDIRMPVMGGLEAVRKLRAMDPQVRI--LILTVSEEDDDLFEAIRAGANGYLLKNV 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     +I        GLLAA                  LT RE+E L 
Sbjct: 108 DPDELISSIQKVAAGEAVI-------PGLLAARIVAELHKEATPEDVLEPLTSRELEVLG 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++S G ++ EIA  L IS +TV N+I +I+ K     R  A AYA+R  I
Sbjct: 161 YLSTGASNREIAKQLFISEHTVRNHIQNILGKLHLTNRVQAAAYAIRQGI 210


>gi|206972973|ref|ZP_03233895.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134]
 gi|228924979|ref|ZP_04088109.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229182326|ref|ZP_04309600.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229194039|ref|ZP_04320933.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|206731857|gb|EDZ49057.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134]
 gi|228589439|gb|EEK47364.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228601135|gb|EEK58682.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228834642|gb|EEM80151.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 213

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + +L+    +I   R+ +  L
Sbjct: 76  CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q  M          + ELT RE E L  + +G ++ EIA +L IS  TV  +I  I
Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K   K+RS A+ YAVRN +V
Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210


>gi|86359580|ref|YP_471472.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283682|gb|ABC92745.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 251

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 26/186 (13%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +  +  +  +  PF     MA  + D +    +R  ++    F           G+++ Y
Sbjct: 81  DPMVRYLAHAQRPFRWRESMAAFDGDAH---QRRMEQMMVDAFGH---------GLEDGY 128

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF----------KSYDVHW 180
                      +G + L  K   +      EI LL A     F          ++ +   
Sbjct: 129 L-FPIHGRNGILGSLTLGGKPIDLSP---VEIALLEAVARKSFWRLLDLTGEAEALETVL 184

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A
Sbjct: 185 PTETPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALA 244

Query: 241 VRNNIV 246
            R+ ++
Sbjct: 245 FRHGLI 250


>gi|294340032|emb|CAZ88396.1| autoinducer-binding transcriptional regulator LuxR family
           [Thiomonas sp. 3As]
          Length = 237

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 20/228 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           +  + C       + ++   +G  H  + L R  L    +   ++ +++P          
Sbjct: 12  LQTITCDAQLFEIVVSMVHSLGFDHCSYGL-RMPL-PVSRPKVVLLTNYPRAWENRYTEK 69

Query: 94  EKDKYYNVLQRPTELFCPV------FHTLPENITPPA--GMDNRYCSLTFDVARIRIGLM 145
                   ++  T    PV      F +  +        G+   +   + DV    +GL+
Sbjct: 70  GYLAVDPTVRHGTHSLQPVVWSDAFFASSRDLWEEARSFGLCVGWAQSSRDVNST-MGLL 128

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFK-------SYDVHWGKDFELTGREVECLTWIS 198
            +   G  I    L +  +  A+   M         +  +       LT RE+E L W +
Sbjct: 129 SVSRSGEPISEIELRDKEMQLAWLTQMVHLGMSRILTAKLMPAVTAPLTDREIEVLRWTA 188

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKT+ EIA IL IS  T N +IA+ + K     ++ A+  A    ++
Sbjct: 189 DGKTASEIADILNISERTANFHIANAIAKLHAPNKTAAVIRAGMLGML 236


>gi|83716463|ref|YP_440275.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650288|gb|ABC34352.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 425

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 19/231 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
              ++   C  S   +       +G  +F   R  +         +   +P +       
Sbjct: 197 FNEILSATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPTEWRLRYDA 254

Query: 93  SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143
           ++      V+Q       P ++H           M +           S         I 
Sbjct: 255 ADYLSIDPVVQHCRCRTVPLIWHDELYTTGRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 314

Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
           ++ +            ILR       L +   A M +  D    +    +LT RE E L 
Sbjct: 315 MLSMATDDPFEHDANDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 374

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 375 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 425


>gi|167578890|ref|ZP_02371764.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167616988|ref|ZP_02385619.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257140903|ref|ZP_05589165.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
          Length = 238

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 19/231 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
              ++   C  S   +       +G  +F   R  +         +   +P +       
Sbjct: 10  FNEILSATCKKSLFEQTAYHVRQLGFKNF-AYRHQISGAAS-SRCMLDGFPTEWRLRYDA 67

Query: 93  SEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRY--------CSLTFDVARIRIG 143
           ++      V+Q       P ++H           M +           S         I 
Sbjct: 68  ADYLSIDPVVQHCRCRTVPLIWHDELYTTGRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 127

Query: 144 LMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
           ++ +            ILR       L +   A M +  D    +    +LT RE E L 
Sbjct: 128 MLSMATDDPFEHDANDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQ 187

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W   GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 188 WAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|332706485|ref|ZP_08426546.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332354369|gb|EGJ33848.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 230

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           ++++Y+  S + ++  +  Q+    S++ +  P  LV  + +   D Y     V Q+P  
Sbjct: 17  SVSDYLEMSGYSVITAENGQQAL--SMIETYHPHLLVTDINMPRIDGYELVRKVRQKPPL 74

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV          + I       + Y    F++  +   +  L  + ++I  +  +  
Sbjct: 75  RLLPVVFLTELNSTNQRIKGYQSGCDVYLPKPFEMEELGAVIQSLLVRSQVIHTELRFPP 134

Query: 163 GLLAAYQ----ANMFKSYDVHWGKD-------FELTGREVECLTWISEGKTSDEIAVILG 211
                      +    S D++   +        +LT RE + L  ++ G ++ EI   L 
Sbjct: 135 QTTKEPVDKPASRSINSVDINHQSENNTQAYALQLTEREQQVLNLLATGLSNVEIGNQLY 194

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  T+  +++S+ RKT T  R+  + +A+ ++++
Sbjct: 195 RSPRTIEKHVSSLFRKTDTSNRAELLRFALEHHLI 229


>gi|111220761|ref|YP_711555.1| putative protein-glutamate methylesterase [Frankia alni ACN14a]
 gi|111148293|emb|CAJ59965.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a]
          Length = 237

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 2/161 (1%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           + R   +         +     +   +     +           Y      +  +   + 
Sbjct: 76  MPRRGGIDATSAIKEAVPSAKIVMLTISDEEADLYDAIKAGAMGYLLKEISIDEVAADIR 135

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            ++    +I         LL+ + A +    D        LT RE+E L  +++G  + +
Sbjct: 136 AVYGGQSLISPS--MASKLLSEFAAMIKNKDDRPQLPTPRLTDREMEVLRLVAKGMNNRD 193

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS NTV N+I +I+ K    +R  A+ YAVR  ++
Sbjct: 194 IAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234


>gi|311279135|ref|YP_003941366.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308748330|gb|ADO48082.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 240

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 143 GLMLLFPKGRIILRDRLWE------IGLLAAYQANMFKSYDVH--WGKDFELTGREVECL 194
            L  L      I +D L E      + +LA +        D       + + + RE+E L
Sbjct: 129 ALGFLSVSREGIQKDPLAEDETQMRLQMLAEFSTTALLRLDDSAILTPEMKFSKRELEIL 188

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGKTS EI++IL IS NTVN +  ++ +K     ++    YAV   ++
Sbjct: 189 KWTAEGKTSAEISIILSISENTVNFHQKNMQKKFNAPNKTQIACYAVATGLI 240


>gi|311031947|ref|ZP_07710037.1| two-component response regulator DegU [Bacillus sp. m3-13]
          Length = 239

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 10/143 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP---KGRIILRDRLWEIGLLAAY 168
           V H L          +    +L   V  +  G   L P      +    RL E G+ +  
Sbjct: 92  VTHALQTGARGYLLKEMDADALVDAVKVVADGGSYLHPKVTHNLVREYRRLTENGVRSGV 151

Query: 169 QANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +            +  E       LT RE E L  +++GK++  I   L IS  TV N++
Sbjct: 152 RGGNGGGSTATTYQQIEIRRPLHLLTRRECEVLQLLADGKSNKAIGEALFISEKTVKNHV 211

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
           ++I++K     R+ A+  A++N 
Sbjct: 212 SNILQKMNVNDRTQAVVVAIKNG 234


>gi|157145292|ref|YP_001452611.1| DNA-binding transcriptional activator SdiA [Citrobacter koseri ATCC
           BAA-895]
 gi|157082497|gb|ABV12175.1| hypothetical protein CKO_01029 [Citrobacter koseri ATCC BAA-895]
          Length = 240

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 17/233 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDL-FQEQKLDSIVSSDWPFDL 86
           R  +L R   +         +   T+ +   ++ L  R  + F   K+   V + +P   
Sbjct: 10  RRSMLVRFQEMATAEDVYTELQHQTQQLEYDYYALCVRHPVPFTRPKIS--VHTTYPQAW 67

Query: 87  VRCMALSEKDKYYNVL--QRPTELFCP----VFHTLPE--NITPPAGMDNRY--CSLTFD 136
           V             VL  +   +        +F       +     G+      C +  +
Sbjct: 68  VAHYQSENYFSIDPVLKPENFRQGHLAWNDALFSEAQSLWDAARAHGLRRGATQCLMLPN 127

Query: 137 VARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKS--YDVHWGKDFELTGREVEC 193
            A   + +     +      D +   + LL     +       ++    +   + RE E 
Sbjct: 128 RALGFLSVSRASARHAPFAHDEIELRLQLLVRESLSALTRLEDEMVMTPEMRFSKREKEI 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 188 LKWTAEGKTSSEIAMILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|229156108|ref|ZP_04284207.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627429|gb|EEK84157.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 213

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 7/156 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +   +           L   ++      +       + Y        ++   + +L+  
Sbjct: 62  GIEATELVKKFHSSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I   R+ +  L+  +Q  M          + ELT RE E L  + +G ++ EIA +L
Sbjct: 122 DSVI-HPRMTK-KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVL 174

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 175 YISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|319650652|ref|ZP_08004792.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397833|gb|EFV78531.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 57/133 (42%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L    +     +    +L   V  +  G   L PK    L +    +  + A  + 
Sbjct: 91  VTHALKTGASGYLLKEMDADALVEAVKVVADGGSYLHPKVTHNLVNEYRRLSAVGAGSSG 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            + S          LT RE E L  +++GK++  I   L IS  TV N++++I++K    
Sbjct: 151 GYSSQIEIRRPLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVN 210

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A++N 
Sbjct: 211 DRTQAVVVAIKNG 223


>gi|219846976|ref|YP_002461409.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219541235|gb|ACL22973.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 229

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 43/86 (50%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E+              D        L+ RE+E L  ++ G+T+ EIA  L IS  TV N+
Sbjct: 136 EVAATVLEAFRQMVGDDDVQTVFSPLSARELEVLELVAAGRTNREIAAQLDISNQTVKNH 195

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           I+SI+RK A   R+ A+ YA+R   +
Sbjct: 196 ISSILRKLAVNDRTQAVVYAMRRGWI 221


>gi|172036050|ref|YP_001802551.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171697504|gb|ACB50485.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 224

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 15/210 (7%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPT 106
            A+ +Y+    +  +     ++    S+V    P  LV  + +  KD Y     + Q P 
Sbjct: 16  VAVKDYLEMHGYTAITAQNGEDAF--SLVQKYRPHLLVSDIKMPYKDGYTLVKELRQLPE 73

Query: 107 ELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW- 160
               PV       T    I       + Y    F++  ++  +  L  + +II  +  + 
Sbjct: 74  FRLLPVVFLTECDTTENRIQGYQVGCDVYLPKPFEMEELKAVIRNLLERSQIIQSEWRFS 133

Query: 161 -EIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNT 216
            E   +        ++  +    + EL   T RE E L  ++ G ++ EI   L +S  T
Sbjct: 134 QEQAQIQKNLQQQQEAAKISIQAEMELLDLTRRESEVLDLLTMGLSNGEIGQRLHLSPRT 193

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  Y++S++RKT T  R+  + +A+ +++V
Sbjct: 194 IEKYVSSLLRKTDTSNRAELVRFALDHHLV 223


>gi|86739478|ref|YP_479878.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86566340|gb|ABD10149.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 237

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 2/161 (1%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           + R   +         +     +   +     +           Y      +  +   + 
Sbjct: 76  MPRRGGIDATSAIKEAVPSAKIVMLTISDEEADLYDAIKAGAMGYLLKEISIDEVAADIR 135

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            ++    +I         LL+ + A +    D        LT RE+E L  +++G  + +
Sbjct: 136 AVYGGQSLISPS--MASKLLSEFAAMIKNKDDRPQLPTPRLTDREMEVLRLVAKGMNNRD 193

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS NTV N+I +I+ K    +R  A+ YAVR  ++
Sbjct: 194 IAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234


>gi|73662256|ref|YP_301037.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72494771|dbj|BAE18092.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 207

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 76/180 (42%), Gaps = 19/180 (10%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE----LFCPVFHTLPENITPPAGMD-- 127
           LD + ++  P  ++  + + E +    + +   +    +   V  +  ++    + +D  
Sbjct: 40  LDYLENNTLPDIVLLDLVMPEMNG-IEITEWMKKKYPNVKILVLTSYIDDEHVISAIDKG 98

Query: 128 -NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y     +  ++   +  +    +II                ++ ++         +L
Sbjct: 99  ADGYEMKDVEPEQLIKTIKHVLAGEKIIHPQA-----------QHVIETVSKKPHYANKL 147

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E LT +++GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA++NN++
Sbjct: 148 SKRESEVLTEMAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVTDRTQAAIYAMQNNLI 207


>gi|146338047|ref|YP_001203095.1| putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like [Bradyrhizobium sp. ORS278]
 gi|146190853|emb|CAL74858.1| putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like [Bradyrhizobium sp. ORS278]
          Length = 242

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 82/229 (35%), Gaps = 13/229 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D +  +     + S   +   +   +G   +++       +    +I+++ WP +     
Sbjct: 12  DYVDAIEASKTSASVITQFEKMICDLGFHAYIMAGVPAPGQSLQQTILANGWPREWFEMY 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRYCSLTFDVARI-- 140
           A  +  +   + +       P             P          +   +  F V     
Sbjct: 72  AREQFHRCDPIPRHCVSTLNPFAWSEVPYDREDDPGAHEVMMRARDFRLNEGFCVPIHYD 131

Query: 141 -RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
             +G + +  +   +  D    + L++ +  +  ++            L+  E E L+W 
Sbjct: 132 DAVGAVSIAGEHPNLAPDARGALHLISIFTHSRLRALARATAGNPGRRLSRIEAEVLSWA 191

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ E A ILG+S   V  ++    RK ATK ++  +A A+ N  +
Sbjct: 192 ARGKTAWETARILGVSERNVRWHLEEAQRKLATKNKTATVATALVNGEI 240


>gi|148258315|ref|YP_001242900.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410488|gb|ABQ38994.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1]
          Length = 242

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D +  +     + S   +   +   +G   +++       +    +I+++ WP +     
Sbjct: 12  DYVDAIEASKTSASVLSQFEKMIGDLGFHAYIMAGVPAPGQSLQHTILANGWPSEWFDLY 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRYCSLTFDVARI-- 140
           A  +  +Y  + +       P          +  P          +   +  F V     
Sbjct: 72  AREQFHRYDPIPRHCLSTLNPFAWSEAPYDRNDEPGAHEVMTRARDFRLNEGFCVPIHYD 131

Query: 141 -RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
             +G + L  +   +  D    + L++ +  +  ++       G+   L+  E E L+W 
Sbjct: 132 DAVGAVSLAGERPNLAPDARGALHLISIFTHSRLRALARATSGGQSRRLSRIEAEVLSWA 191

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ E A ILG+S   V  ++    RK  TK ++  +A A+ N  +
Sbjct: 192 ARGKTAWETARILGVSERNVRWHLEEAQRKLETKNKTATVATALVNGEI 240


>gi|16080361|ref|NP_391188.1| two-component response regulator YvqE responding to cell wall
           stress [Bacillus subtilis subsp. subtilis str. 168]
 gi|221311254|ref|ZP_03593101.1| hypothetical protein Bsubs1_17956 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315581|ref|ZP_03597386.1| hypothetical protein BsubsN3_17872 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320496|ref|ZP_03601790.1| hypothetical protein BsubsJ_17835 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324780|ref|ZP_03606074.1| hypothetical protein BsubsS_17986 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312856|ref|YP_004205143.1| two-component response regulator YvqE [Bacillus subtilis BSn5]
 gi|68051995|sp|O32197|LIAR_BACSU RecName: Full=Transcriptional regulatory protein liaR
 gi|2635805|emb|CAB15298.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. subtilis str. 168]
 gi|2832821|emb|CAA11745.1| YvqC protein [Bacillus subtilis]
 gi|320019130|gb|ADV94116.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis BSn5]
          Length = 211

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 7/167 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPENITPPAGMDNRYCSLTFDVAR 139
           P  ++  + +   D      Q   EL  P   V  +  ++      ++    S     ++
Sbjct: 48  PDVILMDLVMEGMDGIEATKQICRELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSK 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                  +    R   +        +A    +  +    +      LT RE+E L  I+E
Sbjct: 108 AA----EIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCLIAE 163

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++V
Sbjct: 164 GKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLV 210


>gi|16077998|ref|NP_388814.1| two-component response regulator YhcY [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308771|ref|ZP_03590618.1| hypothetical protein Bsubs1_05153 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313094|ref|ZP_03594899.1| hypothetical protein BsubsN3_05089 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318020|ref|ZP_03599314.1| hypothetical protein BsubsJ_05033 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322294|ref|ZP_03603588.1| hypothetical protein BsubsS_05134 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81814998|sp|O07528|YHCZ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yhcZ
 gi|2226141|emb|CAA74433.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633256|emb|CAB12761.1| two-component response regulator [YhcY] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 214

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 11/175 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-----ENITPPAGMDNRY 130
            ++    P  ++  +++ E D    + +   +        L      E++ P      + 
Sbjct: 40  RVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKA 99

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L        +    +      +    +  +        +M   +D    K ++LT RE
Sbjct: 100 YQLKDTEPEELVKTRQVHGGEYKLSTAIMPHV------LTHMKNQHDPEKEKYYQLTRRE 153

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + LT I+ GK++ EIA  L IS  TV  ++++++ K     R+ A  +AV+ N+
Sbjct: 154 KDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 208


>gi|238027315|ref|YP_002911546.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237876509|gb|ACR28842.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 234

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 87/228 (38%), Gaps = 19/228 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-WDLFQEQKLDSIVSSDWPFDLVRCMA 91
            +R+       +   R+ A+  Y     + + R   L     L     S++P        
Sbjct: 12  FSRIEKPQHLGATLSRVAAILGY-EFVAYGIRRPLPLSNPPSLT---VSNYPARWQERYQ 67

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDNRYCSLTFDVARIRIG 143
                +   V +       PV  +   N +  A        G+ + + S T   A   +G
Sbjct: 68  GLRLAEIDPVARAANASDRPVVWSSQGNDSDQAFWQEASSFGLMHGWSSATR-GAEGTLG 126

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWIS 198
           ++ L   G  I          +  + AN+  +    +       +  LT RE + L W +
Sbjct: 127 VLSLARGGDAIDEVERDRNEFIVHWLANVAHAALAPFLPAAGEPEANLTSRETDVLKWTA 186

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKT+ EI+ IL IS +TVN ++ +IM K  T  +  A+A A    ++
Sbjct: 187 DGKTAYEISRILSISESTVNFHVKNIMSKLGTSNKIQAVAKAALTGML 234


>gi|312199837|ref|YP_004019898.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231173|gb|ADP84028.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 237

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 12/237 (5%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLF 69
           DEQR+      P+  + +  +I +D    +   +  +       E VG +        + 
Sbjct: 4   DEQRSPEAPRAPSEENPIRVLI-VDDHALFRRGLEMVLAQEPDIEVVGEAADGSEAVTMA 62

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
            E   D ++       + R   +         +     +   +     +           
Sbjct: 63  GEMAPDIVLMD---VRMPRRGGIDATSAIKEAVPSAKIVMLTISDEEADLYDAIKAGAMG 119

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      +  +   +  ++    +I         LL+ + + +    D        LT R
Sbjct: 120 YLLKEISIDEVAADIRAVYNGQSLISPS--MASKLLSEFASMIKNKDDRPQLPTPRLTDR 177

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+ YAVR  ++
Sbjct: 178 EMEVLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234


>gi|225182003|ref|ZP_03735435.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167288|gb|EEG76107.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 217

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ++      F+   +    D  L+ RE + LT I+ GK++ EI   L IS  TV N+I +I
Sbjct: 134 ISEKMCGEFQRLALRNVHDEPLSRRETDVLTLIARGKSNKEIGDELYISEKTVKNHITNI 193

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK     R+ A  YAV+N IV
Sbjct: 194 FRKIQVTDRTQAALYAVKNRIV 215


>gi|294501833|ref|YP_003565533.1| two-component response regulator DegU [Bacillus megaterium QM
           B1551]
 gi|295707182|ref|YP_003600257.1| two-component response regulator DegU [Bacillus megaterium DSM 319]
 gi|126540400|emb|CAL44587.1| DegU protein [Bacillus megaterium DSM 319]
 gi|294351770|gb|ADE72099.1| two-component response regulator DegU [Bacillus megaterium QM
           B1551]
 gi|294804841|gb|ADF41907.1| two-component response regulator DegU [Bacillus megaterium DSM 319]
          Length = 227

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 3/134 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L          +    +L   V  +  G   L PK    L      +   A  Q++
Sbjct: 91  VTHALQTGARGYLLKEMDADALIEAVKVVAEGGSYLHPKVTHSLVKEYRRLA--AQGQSS 148

Query: 172 MFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            +    +   +   L T RE E L  +++GK++  I   L IS  TV N++++I++K   
Sbjct: 149 SYPHEPIEIRRPLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNV 208

Query: 231 KTRSGAIAYAVRNN 244
             R+ A+  A++N 
Sbjct: 209 NDRTQAVVVAIKNG 222


>gi|322412404|gb|EFY03312.1| Two-component response regulator yvqC [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 213

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    L   +    +L +  +    V  +  +N      +D             +  
Sbjct: 55  MDLVMP-ELGGVEATLKILDKWKDAKILVLTSYLDNEKIYPVIDAGA----------KGY 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++       I+   R    G LA         K++D H     ELT RE + L  +++G 
Sbjct: 104 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILYLLAKGY 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208


>gi|291483400|dbj|BAI84475.1| hypothetical protein BSNT_01607 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 215

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-----ENITPPAGMDNR- 129
            ++    P  ++  +++ E D    + +   +        L      E++ P      + 
Sbjct: 40  RVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKA 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     +   +   L  +      +    +  +        +M   +D    K ++LT R
Sbjct: 100 YQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHV------LTHMKNQHDPEKEKYYQLTRR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + LT I+ GK++ EIA  L IS  TV  ++++++ K     R+ A  +AV+ N+
Sbjct: 154 EKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209


>gi|228907986|ref|ZP_04071836.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851652|gb|EEM96456.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 213

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + +L+    +I   R+ +  L
Sbjct: 76  CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q  M          + ELT RE E L  + +G ++ EIA +L IS  TV  +I  I
Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K   K+RS A+ YAVRN +V
Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210


>gi|220920328|ref|YP_002495629.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219944934|gb|ACL55326.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 246

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 15/230 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+  +  +        R++   ++VG + F + R     ++   +++ + WP D +    
Sbjct: 15  LIDALDEVRDPFEAQTRIFEHIQHVGFTSFTITRLPRPSDRLGPNMLFNMWPKDWLTHYD 74

Query: 92  LSEKDKYYNVLQRPTELFCPVF-------HTLPENITP------PAGMDNRYCSLTFDVA 138
                ++  V+++      P            P+            G+   +C    D  
Sbjct: 75  RVGHYRFDPVVRQCYRTTEPFAWSEVPFDADQPDRARRVMDEAAAFGLGFGFCIPVHDAL 134

Query: 139 RIRIGLMLLFPKGRIILRDR--LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             + G+ L   +  +  + R  L  +GL A   A               L+ RE + L+W
Sbjct: 135 GFQGGVSLAGERIDLSPKIRRGLHMLGLYAWGAATRTTEDRRRSEPGRLLSARERDVLSW 194

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + G+T +EIA ILG+S  TV  ++ S   K   +  +  +  A+R   +
Sbjct: 195 AAMGRTREEIATILGVSHETVATHLKSARIKIGARNTTQTVVEALRKREI 244


>gi|213418834|ref|ZP_03351900.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 192

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 161 EIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            + LLA    +       D+    +   + RE E L W +EGKTS EIA+IL IS NTVN
Sbjct: 105 RLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVN 164

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  ++ +K     ++    YA    ++
Sbjct: 165 FHQKNMQKKFNAPNKTQIACYAAATGLI 192


>gi|320184745|gb|EFW59537.1| DNA-binding transcriptional activator SdiA [Shigella flexneri CDC
           796-83]
          Length = 159

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 32  HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 83

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 84  LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 143

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 144 PNKTQVACYAAATGLI 159


>gi|242374097|ref|ZP_04819671.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348222|gb|EES39824.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 207

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 74/179 (41%), Gaps = 17/179 (9%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD--- 127
           L  +  ++ P  ++  + + E +       + ++  ++   V  +  ++    + +D   
Sbjct: 40  LSFLKENEQPDIVLLDLVMPEMNGIEITEILKKQYPQIKVLVLTSYVDDEHVISAIDKGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +  ++   +  +    RII  +             N+ ++         +L+
Sbjct: 100 DGYEMKDVEPQKLIETIHKVLNGERIIHPEA-----------KNVIEAVSKKPHFTNKLS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 149 KREVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207


>gi|228918143|ref|ZP_04081650.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841505|gb|EEM86641.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 213

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                L   ++      +       + Y        ++   + +L+    +I   R+ + 
Sbjct: 74  PSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK- 131

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+  +Q  M          + ELT RE E L  + +G ++ EIA +L IS  TV  +I 
Sbjct: 132 KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHIN 186

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I +K   K+RS A+ YAVRN +V
Sbjct: 187 KIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|301052287|ref|YP_003790498.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300374456|gb|ADK03360.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 213

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + +L+    +I   R+ +  L
Sbjct: 76  CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q  M          + ELT RE E L  + +G ++ EIA +L IS  TV  +I  I
Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K   K+RS A+ YAVRN +V
Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210


>gi|229099838|ref|ZP_04230762.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-29]
 gi|228683584|gb|EEL37538.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-29]
          Length = 215

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
           F    H LP      +G    Y     +  ++   +   +     +  D       L + 
Sbjct: 85  FSDQAHVLPALKAGASG----YILKDVEPDQLVEAIRSAYKGNIQLHPD---IASALISQ 137

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                +  + H+     LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K 
Sbjct: 138 TLPQEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKL 197

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A  YAV+N IV
Sbjct: 198 NLSDRTQAALYAVKNGIV 215


>gi|229187725|ref|ZP_04314860.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228595717|gb|EEK53402.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 213

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 7/156 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +   +    +      L   ++      +       + Y        ++   + +L+  
Sbjct: 62  GIEATELVKKIYPSCRVLVFTMYEHDEYLMDALQVGADGYLLKDSSSEQVVAAIRMLYRG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I   R+ +  L+  +Q  M          + ELT RE E L  + +G ++ EIA  L
Sbjct: 122 DSVI-HPRMTK-KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEAL 174

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 175 YISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|107100865|ref|ZP_01364783.1| hypothetical protein PaerPA_01001895 [Pseudomonas aeruginosa PACS2]
 gi|296390203|ref|ZP_06879678.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAb1]
          Length = 223

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 21/217 (9%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           +  +   +G S  L        +   ++ +  ++P         +   +    +   T+ 
Sbjct: 7   LQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQS 66

Query: 109 FCPVF-----------HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR----- 152
             P+F           H   E  +    +     ++    AR  +G + L  +       
Sbjct: 67  VLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGARGELGALSLSVEAENRAEA 124

Query: 153 -IILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +   L  + +L  Y        +++    K   LT RE E L W + GKTS EI+VI
Sbjct: 125 NRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVI 184

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 185 CNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 221


>gi|307130193|ref|YP_003882209.1| transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937]
 gi|306527722|gb|ADM97652.1| Transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937]
          Length = 326

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 25/191 (13%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            + D  Q   LDS     W +      +L              E   PV H +  +    
Sbjct: 153 YQVDPVQIHALDSCAPFTWSYCRPENTSLRRVLN---------EQHRPVSHYMQNH---- 199

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-----LWEIGLLAA-YQANMFKSYD 177
               N  C +T  +   + G + +      +  D      L  IGLLA  +Q ++F  +D
Sbjct: 200 ----NMRCGVTVPLHLPKGGFVTVTAIHTGLDTDNEIETVLARIGLLAHTFQEHVFPLFD 255

Query: 178 VHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             W   +   L+ RE ECL W +EG T+ EIA  L  S  TVN ++ +  RK     R  
Sbjct: 256 EAWYHCRHVHLSPREQECLAWSAEGLTAKEIARKLHRSLATVNLHLNNAARKLGASNRVQ 315

Query: 236 AIAYAVRNNIV 246
           A+  A+   ++
Sbjct: 316 AVVRAMHYRLL 326


>gi|319943177|ref|ZP_08017460.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
 gi|319743719|gb|EFV96123.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
          Length = 236

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 12/218 (5%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                    +   +  +G  H            +      +D+P D       +      
Sbjct: 17  ASEREVFECIQRASRALGFQHVSYGFQAPLPLSRPKFTWLNDYPGDWQTHYMDAGYPAVD 76

Query: 100 NVLQRPTELFCPV------FHTLPENITPPAGMDNRY----CSLTFDVARIRIGLMLLFP 149
             + R  +   P       F  +PE          ++     +L        + L    P
Sbjct: 77  PRIIRARQSSEPFIWNETLFSEVPELWADLQARGIQHGWSQSTLHEPGGIGMLSLCRSTP 136

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIA 207
                L+ RL  +  LA      F              LT RE+E L W ++GK++ +IA
Sbjct: 137 ITEQDLQTRLQHMQWLALLAHKAFSKLIRARIASNAPSLTERELEVLRWTADGKSAQDIA 196

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IL +S+NTV+ +I + + K     ++ A+  AV   +
Sbjct: 197 EILLLSKNTVDFHIRNSINKLDVPNKTAAVVRAVLLGL 234


>gi|291485797|dbj|BAI86872.1| hypothetical protein BSNT_04924 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 211

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 7/167 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPENITPPAGMDNRYCSLTFDVAR 139
           P  ++  + +   D      Q   EL  P   V  +  ++      ++    S     ++
Sbjct: 48  PDVILMDLVMEGMDGIQATKQICRELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSK 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                  +    R   +        +A    +  +    +      LT RE+E L  I+E
Sbjct: 108 AA----EIADAIRAASKGEPKLESKVAGKVLSRLRHSGENELPHESLTKRELEILFLIAE 163

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++V
Sbjct: 164 GKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLV 210


>gi|261420594|ref|YP_003254276.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319768265|ref|YP_004133766.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261377051|gb|ACX79794.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317113131|gb|ADU95623.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 224

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          +    +L   V  +  G   L PK   +  + + E   L   +  
Sbjct: 91  VMRALQTGAAGYLLKEMDADTLIEAVRIVAEGGSYLHPK---VTHNLIREYRRLTTEKGG 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                +V       LT RE E L  +++GK++  I   L IS  TV N+++SI++K +  
Sbjct: 148 AVVKQEVRRPLHL-LTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLSVN 206

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A++N 
Sbjct: 207 DRTQAVVVAIKNG 219


>gi|196041819|ref|ZP_03109108.1| transcriptional regulatory protein DegU [Bacillus cereus
           NVH0597-99]
 gi|229028432|ref|ZP_04184554.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|196027313|gb|EDX65931.1| transcriptional regulatory protein DegU [Bacillus cereus
           NVH0597-99]
 gi|228732881|gb|EEL83741.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 213

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + +L+    +I   R+ +  L
Sbjct: 76  CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q  M          + ELT RE E L  + +G ++ EIA +L IS  TV  +I  I
Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K   K+RS A+ YAVRN +V
Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210


>gi|27468447|ref|NP_765084.1| two-component response regulator-like protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867331|ref|YP_188953.1| LuxR family transcriptional regulator [Staphylococcus epidermidis
           RP62A]
 gi|242243070|ref|ZP_04797515.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811190|ref|ZP_04825663.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875769|ref|ZP_06284636.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366174|ref|ZP_06612860.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315994|gb|AAO05128.1|AE016749_74 two-component response regulator-like protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637989|gb|AAW54777.1| DNA-binding response regulator, LuxR family [Staphylococcus
           epidermidis RP62A]
 gi|242233528|gb|EES35840.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805318|gb|EES57975.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294794|gb|EFA87321.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319696|gb|EFE60056.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329724867|gb|EGG61370.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU144]
 gi|329734273|gb|EGG70588.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU045]
 gi|329737276|gb|EGG73530.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 207

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 19/174 (10%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCS 132
            IV  D     +  + ++E  K     Q+  E+   V  +  ++    + +D   + Y  
Sbjct: 50  DIVLLDLVMPEMNGIEITEILK-----QQYPEIKVLVLTSYVDDEHVISAIDKGADGYEM 104

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              +  ++   +  +    RII                ++ K+         +L+ RE E
Sbjct: 105 KDVEPQKLIETIHKVLQGERIIHPQA-----------KSVIKAVSKKPHYTNKLSKREKE 153

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  + +GKT+ EIA  L +S  TV  +++ I  K     R+ A  YA+ N ++
Sbjct: 154 VLKEMVKGKTNKEIARALFVSEKTVKTHVSHIFSKLEVSDRTQAAIYAMENKLI 207


>gi|323127832|gb|ADX25129.1| Two-component response regulator yvqC [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 213

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    L   +    +L +  +    V  +  +N      +D             +  
Sbjct: 55  MDLVMP-ELGGVEATLEILDKWKDAKVLVLTSYLDNEKIYPVIDAGA----------KGY 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++       I+   R    G LA         K++D H     ELT RE + L  +++G 
Sbjct: 104 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLAKGY 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208


>gi|229105997|ref|ZP_04236618.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-28]
 gi|228677392|gb|EEL31648.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-28]
          Length = 215

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRSGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ASTLISQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  + H+     LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 QEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|163854702|ref|YP_001629000.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258430|emb|CAP40729.1| transcriptional regulator, LuxR-family [Bordetella petrii]
          Length = 71

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE ECL W + GKTS EIAVILG+S  TVN +I +   K     R  A+A A+   
Sbjct: 5   PLSNREHECLHWSAMGKTSWEIAVILGVSERTVNFHIGNACSKLGVYNRRAAVAIALSQG 64

Query: 245 IV 246
           ++
Sbjct: 65  LL 66


>gi|229114235|ref|ZP_04243656.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228669255|gb|EEL24676.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 213

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 7/156 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +   D           L   ++      +       + Y        ++   + +L+  
Sbjct: 62  GIEATDLVKKNYPNCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I   R+ +  L+  +Q  M          + ELT RE E L  + +G ++ EIA  L
Sbjct: 122 DSVI-HPRMTK-KLITYHQQKMK-----LESNENELTEREKEILFELVKGLSNKEIAEAL 174

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 175 YISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|251783082|ref|YP_002997385.1| putative two-component response regulator [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391712|dbj|BAH82171.1| putative two-component response regulator [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 215

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    L   +    +L +  +    V  +  +N      +D             +  
Sbjct: 57  MDLVMP-ELGGVEATLEILDKWKDAKVLVLTSYLDNEKIYPVIDAGA----------KGY 105

Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++       I+   R    G LA         K++D H     ELT RE + L  +++G 
Sbjct: 106 MLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLAKGY 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 166 DNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 210


>gi|224476907|ref|YP_002634513.1| putative two-component response regulator [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421514|emb|CAL28328.1| putative two-component response regulator [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 209

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 13/180 (7%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           DL  ++ L  IV  D     +  + ++EK K          L    +      I+     
Sbjct: 43  DLHAQKILPDIVLLDLVMPEMNGIEVTEKLK--KEFPSIKILVLTSYADDEHVISAINKG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y     +   +   +  +    +II  +              + +          +L
Sbjct: 101 ADGYEMKDVEPDELIQSIHKVLEGNKIIHPE-----------VQKVIEDVAKKPHHINKL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L  +++GKT+ EIA  L +S  TV  +++ I  K     R+ A  YA+ N ++
Sbjct: 150 SNRETEVLKEMAKGKTNKEIAEALYVSEKTVKTHVSHIFSKLQVTDRTQAAIYAMENKLI 209


>gi|218516149|ref|ZP_03512989.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 122

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
             P   +D R     F   R  +G   +     IIL          A    N+ +  +  
Sbjct: 6   AMPTIAVDGRRLVFWFCGERAALGQSEVNELAIIILH---------ALDAYNIVRRNE-- 54

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A 
Sbjct: 55  ESAHNALSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAK 114

Query: 240 AVRNNIV 246
           A+R  ++
Sbjct: 115 AIRLKLI 121


>gi|171316408|ref|ZP_02905627.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098441|gb|EDT43244.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 237

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 16/186 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMD 127
            ++ S++P   V              ++       P+              +     G+ 
Sbjct: 52  FMLQSNYPQTWVDRYVSQNYFAVDPTVRHGLSQMSPLIWRADSQTQSVEFWDEAEHHGLR 111

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHW 180
           + +C +        IGL+ +   G  I    L E G        +A Y  +M        
Sbjct: 112 HGWC-MPSISRTGAIGLVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHLLAKFVP 170

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT RE E L W + GKT  EI  I+ +   TV  ++ + MRK     ++ A   A
Sbjct: 171 EYAVELTARERETLQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKA 230

Query: 241 VRNNIV 246
               ++
Sbjct: 231 AMLGLL 236


>gi|228950550|ref|ZP_04112691.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809127|gb|EEM55607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 213

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                L   ++      +       + Y        ++   + +L+    +I   R+ + 
Sbjct: 74  PSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVLAAIRMLYRGDSVI-HPRMTK- 131

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+  +Q  M          + ELT RE E L  + +G ++ EIA +L IS  TV  +I 
Sbjct: 132 KLITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHIN 186

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I +K   K+RS A+ YAVRN +V
Sbjct: 187 KIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|196047172|ref|ZP_03114389.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108]
 gi|229182965|ref|ZP_04310198.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|196022042|gb|EDX60732.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108]
 gi|228600589|gb|EEK58176.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 213

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + +L+    +I   R+ +  L
Sbjct: 76  CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q  M          + ELT RE E L  + +G ++ EIA +L IS  TV  +I  I
Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K   K+RS A+ YAVRN +V
Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210


>gi|302562273|ref|ZP_07314615.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302479891|gb|EFL42984.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   +  + +G  LL P+              L    A 
Sbjct: 95  VYEALRAGASGFLLKDAPPSQLLHGIRTVAMGAALLDPEV----------TRQLVGRYAA 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  +    +D  LT RE+E L  I++G ++ EIA  L IS+ TV  +++ I+ K   +
Sbjct: 145 RIRPVEDGAPRDLPLTPRELEVLRLIADGLSNSEIAAALLISQETVKTFVSRILAKLGLR 204

Query: 232 TRSGAIAYAVRNNI 245
            R  A+ YA R  +
Sbjct: 205 DRVQAVVYAYRRGL 218


>gi|269925915|ref|YP_003322538.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789575|gb|ACZ41716.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 226

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 10/189 (5%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITP-- 122
           +    Q    +V    P  +V  + L   +      V++R       V  T+ E+     
Sbjct: 33  EASDGQAAIRLVDKLSPDVVVVDINLEGLNGLEATRVIRRRYPNVGVVILTMHEDDEQLF 92

Query: 123 --PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK---SYD 177
                    Y +      R+ + ++    KG  I+ + L     +A+     F+   + +
Sbjct: 93  NAIKAGAAAYVTKDTSPDRL-VDIIRRVGKGEYIINENLITKPFVASRVLKQFRDLAALE 151

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT REVE L  I+ G ++ EIA  + IS  TV N+I SI+RK A   R+ A+
Sbjct: 152 DEENLFTPLTSREVEILDCIARGMSNKEIARQMSISDQTVKNHITSILRKLAVNDRTQAV 211

Query: 238 AYAVRNNIV 246
            YA++   +
Sbjct: 212 IYALKRGWI 220


>gi|225862611|ref|YP_002747989.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102]
 gi|225789899|gb|ACO30116.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102]
          Length = 213

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + +L+    +I   R+ +  L
Sbjct: 76  CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q  M          + ELT RE E L  + +G ++ EIA  L IS  TV  +I  I
Sbjct: 134 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K   K+RS A+ YAVRN +V
Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210


>gi|541659|dbj|BAA06490.1| LasR [Pseudomonas aeruginosa]
          Length = 239

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 21/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +      + W+  +  +   +G S  L        +   ++ +  ++P       
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVF-----------HTLPENITPPAGMDNRYCSLTFDVAR 139
             +   +    +   T+   P+F           H   E  +    +     ++    AR
Sbjct: 65  DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYG--LTMPLHGAR 122

Query: 140 IRIGLMLLFPKGR------IILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREV 191
             +G + L  +          +   L  + +L  Y        +++    K   LT  E 
Sbjct: 123 GELGALSLSVEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSWEK 182

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 183 EVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|320162421|ref|YP_004175646.1| putative LysR family transcriptional regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996275|dbj|BAJ65046.1| putative LysR family transcriptional regulator [Anaerolinea
           thermophila UNI-1]
          Length = 455

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +    +  L+ RE+E L  ++ G ++ EIA  L IS NTV  ++ +I  K    +R+ A 
Sbjct: 1   MELPNNEPLSEREIEILRLVATGASNKEIAQALSISPNTVKVHLRNIFAKIGVVSRTEAT 60

Query: 238 AYAVRNNI 245
            YA+RN I
Sbjct: 61  LYAIRNGI 68


>gi|301059949|ref|ZP_07200832.1| transcriptional regulator, LuxR family [delta proteobacterium
           NaphS2]
 gi|300445958|gb|EFK09840.1| transcriptional regulator, LuxR family [delta proteobacterium
           NaphS2]
          Length = 294

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L  ++EG +++EI+ +L IS +TV ++I  I  K     R+ A  +A R
Sbjct: 231 PTPLTPRELEVLCILAEGTSNNEISHMLNISPHTVKSHIIHIFNKLGVNDRTQAAVWAAR 290

Query: 243 NNIV 246
           +N++
Sbjct: 291 HNLI 294


>gi|13625780|gb|AAK35156.1|AF296284_2 transcriptional activator BviR [Burkholderia cepacia]
 gi|116878313|gb|ABK32010.1| transcriptional regulator [Burkholderia vietnamiensis]
 gi|116878322|gb|ABK32016.1| transcriptional regulator [Burkholderia vietnamiensis]
          Length = 237

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 75/235 (31%), Gaps = 20/235 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDL 86
           R   L             +   A    +G  H  F L R  L    K   ++ S++P   
Sbjct: 5   REKYLNGFATAKSEADVFLEFSADVRALGFDHCSFGL-RIPL-PISKPQFMLQSNYPQTW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVA 138
           V              ++       P+                    G+ + +C +     
Sbjct: 63  VERYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCVQFWEEAGQHGLRHGWC-MPSVSR 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
              IGL+ +   G  I    L E G         A Y  +M     +      ELT RE 
Sbjct: 122 TGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYTVELTVRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W + GKT  EI  I+ +   TV  ++ + MRK     ++ A   A    ++
Sbjct: 182 EALQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236


>gi|319781695|ref|YP_004141171.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167583|gb|ADV11121.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 256

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGR 189
            +      R + GL++       + +D L+E+     +  A + +      G+   ++ R
Sbjct: 139 IAFPVHADRGQCGLVVFLGSEMTLQQDALYEVHARCFSLFAAVARIRPGDAGRMRAISKR 198

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+ECL   + G TS+EIA +L +S +T N Y+    +K     R+ A+A A+R  ++
Sbjct: 199 ELECLKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255


>gi|317121636|ref|YP_004101639.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315591616|gb|ADU50912.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 222

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 11/208 (5%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +  + E  GAS   +V      +  L+  V    P  ++  + L+E D    V + 
Sbjct: 13  IREGLQRVLE--GASGLQVVGHAAAADPLLER-VRQLAPDVVLLDLGLAEDDARDLVGRL 69

Query: 105 PTELFCPVFHTLPENITPPAGMD------NRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
                 PV   + +   P A +         Y     + A +   +        +I  + 
Sbjct: 70  GRAPSAPVVVGITDRADPQALLGLVQAGLGGYLLANREAAGLAEAIRACTAGIFVIDAEI 129

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           + E+   +     +    +V   +   L+ RE+E L+ I+ GK++ ++A  L IS  TV 
Sbjct: 130 MSELAHDSPLYRYVPAPEEVERAR--LLSQRELEVLSRIARGKSTAQVARELYISPKTVR 187

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N+++ IM+K   + R+ A+ +A+R  ++
Sbjct: 188 NHLSHIMQKLGVRDRTQAVLFALRVGLI 215


>gi|293553248|ref|ZP_06673885.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1039]
 gi|291602658|gb|EFF32873.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1039]
          Length = 210

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           +R+ E  +       M +  D    +  ELT RE E L  ISEGK++ EIA  L I+  T
Sbjct: 122 ERVLEPEVTTKMMEKMSRRNDPVLHE--ELTNRENEILMLISEGKSNQEIADELFITLKT 179

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++++I+ K   + R+ A  YA ++ +V
Sbjct: 180 VKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209


>gi|297537928|ref|YP_003673697.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297257275|gb|ADI29120.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 247

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L W+  GKT+ EI+ IL IS+ TV N++ +I+RK   + RS A   A +  +
Sbjct: 183 MTKRESEILQWLHMGKTNWEISSILDISQLTVKNHVQNILRKLDVQNRSQAAVKAAKLGL 242

Query: 246 V 246
           +
Sbjct: 243 I 243


>gi|332096683|gb|EGJ01674.1| regulatory protein sdiA [Shigella boydii 3594-74]
          Length = 147

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   IL D L  ++ LL   +  A
Sbjct: 20  HGLRRGVTQYLMLPNRALGF--------LSFSRCSTREIPILSDELQLKMQLLVRESLMA 71

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 72  LMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 131

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 132 PNKTQVACYAAATGLI 147


>gi|329940013|ref|ZP_08289295.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329300839|gb|EGG44735.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 225

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L          D     +   V  +  G   L P  +  L +RL   G +       
Sbjct: 98  FPALRAGARGYLTKDAGGEEILRAVRSVVSGQAGLAPSVQRRLLERLDRPGTVVT----- 152

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT REVE L  I+EG ++ EIA  L +S  TV  +I ++  KT  K 
Sbjct: 153 -----SPEEAPDGLTVREVEVLVLIAEGLSNQEIARRLHVSTATVKTHINNMFAKTGLKD 207

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA R  +V
Sbjct: 208 RAQAVRYAFRKGLV 221


>gi|229074417|ref|ZP_04207449.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|229095286|ref|ZP_04226278.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229101393|ref|ZP_04232137.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228682098|gb|EEL36231.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228688145|gb|EEL42031.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228708701|gb|EEL60842.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 213

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + +L+    +I   R+ +  L
Sbjct: 76  CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q  M          + ELT RE E L  + +G ++ EIA  L IS  TV  +I  I
Sbjct: 134 ITYHQQKMK-----LESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K   K+RS A+ YAVRN +V
Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210


>gi|152974963|ref|YP_001374480.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152023715|gb|ABS21485.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 210

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 14/181 (7%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAG 125
           +K   +     P  ++  + + E D        + + P      V  F    +       
Sbjct: 37  RKGSELALQLKPDIILMDLVMDEMDGVEATRAIIKEWPEAKIVVVTSFLDDEKLYPVIEA 96

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T   + I   +   +    ++      E  +     + M +  +     D  
Sbjct: 97  GATSYLLKTSRASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD-- 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 149 LTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|90422223|ref|YP_530593.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104237|gb|ABD86274.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB18]
          Length = 245

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 73/229 (31%), Gaps = 16/229 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVRCMA 91
           + R        +    +       G   F++           D  ++   WP        
Sbjct: 16  IERFQTTTSPRALIDAVRDAAAAYGYRSFVIAAAPKLACNAFDKRVLLRHWPEAWFGQYL 75

Query: 92  LSEKDKYYNVLQRPTELFCPV-------------FHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  +     +                     + +       M   +C   F + 
Sbjct: 76  QDNYQDHDPIAAHARQQTRAFCWSDAPWDRSDKKTAAVMDCAAHDYDMRRGFCVPIFGMR 135

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWI 197
                +    P+           + L+A Y  N   +  +    +   L+ RE E + W 
Sbjct: 136 GYEAAISFGGPEIDA-SPAATAAMELIAIYAMNQLMTMREPPARRQTTLSPREREVVAWA 194

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ + A IL IS +TVN ++AS MRK    T++ A+  ++R   +
Sbjct: 195 AVGKTAWDTARILAISTDTVNKHMASAMRKLDACTKTQAVVESIRRGEI 243


>gi|124266442|ref|YP_001020446.1| response regulator [Methylibium petroleiphilum PM1]
 gi|124259217|gb|ABM94211.1| response regulator [Methylibium petroleiphilum PM1]
          Length = 245

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 11/145 (7%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQA 170
           F  L          ++R+  L  ++ +I  G   L P    R++   RL + G +A   A
Sbjct: 101 FPALQCGADGYLLKEDRFEVLVEELQKIVRGQPPLSPAIARRLLSHFRLGDSGSMALDSA 160

Query: 171 N--------MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +           +  V+   D E LT RE E LT++S+G T  EIA ++GI   TVN++I
Sbjct: 161 HAPGDFQPARPAAPAVYAEPDHERLTPRETEVLTYLSKGFTIKEIAGLMGIKWFTVNDHI 220

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I RK    +R+ A   A +  +V
Sbjct: 221 KAIYRKLNVSSRAEAAVLASKQGLV 245


>gi|190893853|ref|YP_001980395.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190699132|gb|ACE93217.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 251

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 10/178 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDN 128
           +  +  +  +  PF     MA    D +    +R  ++    F H L +  + P  G + 
Sbjct: 81  DPMVRYLTHAQRPFRWRESMAAFNSDAH---RRRMEQMMVDAFGHGLEDGYLFPIHGRNG 137

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
              SL+     I +  + +      + R   W +  L        ++ +     +  LT 
Sbjct: 138 ILGSLSLGGRPIELSPVEIALL-EAVARKTFWRLLELTGEA----EALETVLPAETPLTR 192

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+ ++
Sbjct: 193 REMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQGKLKAKNRQQAVALAFRHGLI 250


>gi|308172920|ref|YP_003919625.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605784|emb|CBI42155.1| two-component response regulator [YhcY] [Bacillus amyloliquefaciens
           DSM 7]
          Length = 214

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 48/94 (51%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R +   R      +  +  N     D +  K ++LT RE + L  I++GK++ EIA  L 
Sbjct: 115 REVYSGRYRLSADIVPHVLNHMVQDDQNKEKYYQLTPREKDVLQEIAKGKSNKEIAASLF 174

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IS  TV  ++++++ K     R+ A  YAV+ N+
Sbjct: 175 ISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNV 208


>gi|118476319|ref|YP_893470.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415544|gb|ABK83963.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 216

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + +L+    +I   R+ +  L
Sbjct: 79  CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSVI-HPRMTK-KL 136

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q  M          + ELT RE E L  + +G ++ EIA  L IS  TV  +I  I
Sbjct: 137 ITYHQQKMK-----VESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 191

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K   K+RS A+ YAVRN +V
Sbjct: 192 FKKLNVKSRSQAVIYAVRNQLV 213


>gi|78222725|ref|YP_384472.1| LuxR family transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193980|gb|ABB31747.1| transcriptional regulator, LuxR family [Geobacter metallireducens
           GS-15]
          Length = 246

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 165 LAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LA Y     +     D+       LT RE+E ++W++ GK   EI+VILGIS  TV  + 
Sbjct: 159 LAPYFHEALRRTVQTDLPSACLATLTPREIEVISWLANGKNYWEISVILGISERTVKFHT 218

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I++K     RS A+A A+   ++
Sbjct: 219 STIVQKLGAANRSHAVAIAISTGLI 243


>gi|312115398|ref|YP_004012994.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220527|gb|ADP71895.1| transcriptional regulator, LuxR family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 251

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 78  VSSDWPFDLVRCMALSEKDK------YYNVLQRPTELFCPVFHTL--PENITPPAGMDNR 129
           +  ++P D +    L++ +K      Y     RP      V      P+ +      +  
Sbjct: 57  LVCNYPDDWMEHYRLNQYEKKDPVPQYGISASRPFTWASVVAQRKWHPDQMKVMHEAEEA 116

Query: 130 Y----CSLTFDVARIRIGLMLLFPKGRIILRDR--LWEIGLLAAYQANMFKSYD------ 177
                 ++        +    +      +  DR  L ++  LA      F   +      
Sbjct: 117 RLCDGIAVPVCGVNGELAGFGIASSHGGVSPDRTLLHKVQALAIQFHLAFTELEKIETPL 176

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                +  LT RE E ++W +EGK+   IA ILG+S +TV  ++ ++ +K     R+ A 
Sbjct: 177 TENLAEVYLTEREKEIMSWAAEGKSDSVIAEILGVSHSTVRFHMNNVFKKLNANERTLAT 236

Query: 238 AYAVRNNIV 246
             A+R+ ++
Sbjct: 237 VKAIRHGLI 245


>gi|184156458|ref|YP_001844797.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii
           ACICU]
 gi|183208052|gb|ACC55450.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii
           ACICU]
          Length = 238

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 24/237 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            DLL+  + +         + ++   +G  +  + +       E K  +I+ +++P    
Sbjct: 6   EDLLSAFLVVKNEYQLFDIVKSIASRLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITPPAGMDNRYCSLTFDVARIR 141
           +     +  K    +Q       P+        T  E                   +R  
Sbjct: 64  KRYVEQQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDF 123

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-----------YDVHWGK-DFELTGR 189
           IG   +    R    D+L E    A Y    + +            DV + K +  LT R
Sbjct: 124 IGTRGMLTLAR--SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNR 181

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  A   AV   ++
Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|170769400|ref|ZP_02903853.1| regulatory protein SdiA [Escherichia albertii TW07627]
 gi|170121724|gb|EDS90655.1| regulatory protein SdiA [Escherichia albertii TW07627]
          Length = 228

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 11/136 (8%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLA--AYQA 170
           H L   +T    + NR            +       +   +  D L  ++ LL   +  A
Sbjct: 101 HGLRRGVTHYFMLPNRALGF--------LSFSRSSTREIPVPGDELQLKMQLLVRESLMA 152

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K   
Sbjct: 153 LMRLNDEMVMTPEMHFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINA 212

Query: 231 KTRSGAIAYAVRNNIV 246
             ++    YA    ++
Sbjct: 213 PNKTQVACYAAATGLI 228


>gi|299771984|ref|YP_003734010.1| Transcriptional activator protein phzR [Acinetobacter sp. DR1]
 gi|284158686|gb|ADB80058.1| AqsR [Acinetobacter sp. DR1]
 gi|298702072|gb|ADI92637.1| Transcriptional activator protein [Acinetobacter sp. DR1]
          Length = 238

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 16/186 (8%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRYCSLTF 135
           I+ +++P    +     +  +    +Q       P V+ +   N            S   
Sbjct: 53  IMLNNYPEAWQKRYVKQQYVRVDPTVQHCMLSLQPLVWSSQSANTQSQKDFWEEARSYGL 112

Query: 136 DVARIRIGLMLLFPKGRIILR---DRLWEIGLLAAYQANMFKSYDVHWGK---------- 182
           +V   +     +  +G + L    D+L E    A Y    + S  VH             
Sbjct: 113 NVGWAQSSRDFIGTRGMLTLARSTDQLLEKEQKAQYTNMFWLSQTVHSSIAKIVNETEFA 172

Query: 183 --DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  LT RE E L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   A
Sbjct: 173 QFNLYLTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRA 232

Query: 241 VRNNIV 246
           V   I+
Sbjct: 233 VMLGIL 238


>gi|220932804|ref|YP_002509712.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
 gi|219994114|gb|ACL70717.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
          Length = 209

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 44/95 (46%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             I   R  E  L       + K       K   LT RE E L  +  G ++ +IA  L 
Sbjct: 113 EAIKAARRGEPVLTPGVAKKIMKRAARKGRKTEPLTPREKEVLACLVRGNSNRDIAKTLC 172

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  ++++I++K   K R+ A+  A+ NN+V
Sbjct: 173 ISETTVKTHVSNILKKLDVKDRTQAVIKAIENNLV 207


>gi|288960338|ref|YP_003450678.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912646|dbj|BAI74134.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 287

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA + A +    D       +L+ RE E L W S GKTS E  ++LG+S  TVN Y+ + 
Sbjct: 206 LALHSAMVSSEPDDAEEVPCKLSPREREVLDWASRGKTSWETGMVLGLSEKTVNFYLRNA 265

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K    T+  A A AVR  ++
Sbjct: 266 CQKMNAATKVQAAAQAVREGLI 287


>gi|229169497|ref|ZP_04297202.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613996|gb|EEK71116.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 184

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + ++     +I   R+ +  L
Sbjct: 48  CRVLVLTMYEHDEYLMAALRAGADGYLLKDSSSEQVVAAIRMVLQGDSVI-HPRMTK-KL 105

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q    +S       + ELT RE E L  + +G ++ EIA  L IS  TV  ++  I
Sbjct: 106 ITYHQQTKSESN------ENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHVNKI 159

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK   K+RS A+ YAVRN +V
Sbjct: 160 FRKLNVKSRSQAVIYAVRNQLV 181


>gi|254385060|ref|ZP_05000394.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343939|gb|EDX24905.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 224

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D           + E   A   L V  +     +    V +  P  ++  + 
Sbjct: 1   MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57

Query: 92  LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   D               P ++       L E +            L    A   +  
Sbjct: 58  MPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQA 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L   +    LL  Y  ++    D        LT REVE L  ++ G ++ 
Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEDSVPNTLGTLTEREVEVLKLVARGLSNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|330809090|ref|YP_004353552.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377198|gb|AEA68548.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 272

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 84/231 (36%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSDWPFDLVRCMA 91
              +        W   +  +   +G   +L+    +  ++    + + + +P   +    
Sbjct: 23  FTSLAKDANRCDWERLLNKVLRQLGFGSYLISLGPVAPRDTDPLAGLITTFPKRWLEHYR 82

Query: 92  LSEKDKYYNVLQRPTELFCPVF------------HTLPENITPPAGMDNRYCSLTFDVAR 139
                +   +L+       P+F                E              L +++ R
Sbjct: 83  CDGLIEIDPILRHCRRELVPLFWDSERRRARGRSRHFWEQREQHGLRSGVSIPLRYEMLR 142

Query: 140 IRIGLML---LFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDFELTGREVECLT 195
             + +        + +      ++++ +L  Y  A +            +LT +E++CL 
Sbjct: 143 GTLSVAFDDTQITEQKGFSNPAVYQLFMLIPYLLAGIRHQLQRPAQPRQDLTPKEMDCLY 202

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W SEGKT+ EI+ IL  S  T++ ++ +  RK  + +R  A++ AV   +V
Sbjct: 203 WASEGKTTWEISHILTCSERTIDFHLLNARRKLGSVSRQQAVSAAVACGLV 253


>gi|261856181|ref|YP_003263464.1| LuxR family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261836650|gb|ACX96417.1| two component transcriptional regulator, LuxR family
           [Halothiobacillus neapolitanus c2]
          Length = 292

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L+ +G  +L  R+ E GLL+  Q +  ++      + F+LT RE E L W++ GKT+ EI
Sbjct: 195 LWHQGERLLFTRI-EPGLLSI-QRHAAQAEPEALARIFQLTAREAESLYWVALGKTNKEI 252

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             IL IS  TVN ++  +  K   +TR+ A A
Sbjct: 253 GEILQISPRTVNKHLEHVFEKLGVETRTAAAA 284


>gi|229118901|ref|ZP_04248248.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-3]
 gi|228664557|gb|EEL20052.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-3]
          Length = 215

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
           F    H LP      +G    Y     +  ++   +   +     +  D       L + 
Sbjct: 85  FSDQAHVLPALKAGASG----YILKDVEPDQLVEAIRSAYKGNIQLHPD---IASTLISQ 137

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                +  + H+     LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K 
Sbjct: 138 TLPQEERAEEHFVHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKL 197

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A  YAV+N IV
Sbjct: 198 NLSDRTQAALYAVKNGIV 215


>gi|313901723|ref|ZP_07835152.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468011|gb|EFR63496.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 222

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 89/220 (40%), Gaps = 11/220 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + +++           +  + E  GA    +V      E  LD  V    P  ++  ++L
Sbjct: 1   MLKILVATGRPLVREGLQRILE--GAPGLQVVGHAAGPEPLLDR-VRELVPDVVLLDLSL 57

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------NRYCSLTFDVARIRIGLML 146
           +  D    V +       PV   + +   P A +         Y     + A +   +  
Sbjct: 58  AAGDARELVGRIGRMPGSPVVVGITDRADPHALLGLVQAGLGGYLLANREAAGLSEAIRA 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +I  + + E+   +     +    +V   +   L+ RE+E L+ I+ GKT+ ++
Sbjct: 118 CTAGIFVIDAEIMSELASDSPLYRYVPAPEEVERAR--LLSQRELEVLSRIARGKTTAQV 175

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV N+++ IM+K   + R+ A+ +A+R  ++
Sbjct: 176 ARELFISPKTVRNHLSHIMQKLGVRDRTQAVLFALRVGLI 215


>gi|34499545|ref|NP_903760.1| LuxR/UhpA family transcriptional regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|327200688|pdb|3QP6|A Chain A, Crystal Structure Of Cvir (Chromobacterium Violaceum
           12472) Bound To C6-Hsl
 gi|34332902|gb|AAQ61750.2| transcriptional activator, LuxR/UhpA family of regulators
           [Chromobacterium violaceum ATCC 12472]
          Length = 265

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 14/187 (7%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP--------TELFCPVFHTLPENIT 121
           Q Q+++ +++  +P D +   +     ++  +++           E F     +  +   
Sbjct: 68  QIQRMEKVLNVSYPSDWLNQYSQENFAQHDPIMRIHLGQGPVIWEERFSRAKGSEEKRFI 127

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLF------PKGRIILRDRLWEIGLLAAYQANMFKS 175
             A  +     +TF  A  R  +  +       P     L   L  +       A    +
Sbjct: 128 AEASSNGMGSGITFSAASDRNNVGSILSIGGKEPGRNAALVAMLNCLTPHLHQAAVRIAN 187

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                  +  L+ RE +   W+S GKT+ EIA IL IS  TV  ++A+++RK     R+ 
Sbjct: 188 LPPASPSNMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKLNANNRTH 247

Query: 236 AIAYAVR 242
           AI   + 
Sbjct: 248 AIVLGMH 254


>gi|289642814|ref|ZP_06474951.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507383|gb|EFD28345.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 233

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 3/156 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +         +     +   V     +           Y   +     +   +  +   
Sbjct: 76  GIDAASAIKREVPTAKIVMLTVSDDEADLFEAIKAGAVGYLLKSIPPHEVASAVRAVHNG 135

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             +I         L+  + A    S D         LT RE+E L  ++EG+ + EIA  
Sbjct: 136 LSLISPS--MASKLIVEFAALARGSDDRPSRVPAPHLTARELEVLKLVAEGRANREIARK 193

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 194 LFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 229


>gi|163760319|ref|ZP_02167402.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162282718|gb|EDQ33006.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 208

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 11/210 (5%)

Query: 44  SWTMRMYALTEYVGASHFLLVRWDLFQEQK-LDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
            +     AL     + HF+LV      +   L+   S     D           +   ++
Sbjct: 2   DFFRLFKALAAVHDSEHFVLVELSTDDKPLDLNRGHSLHNVSDAFLDAEAVSAKRDDPLV 61

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI---RIGLMLLFPKGRIILRDRL 159
                   P         TP         ++   +      R GL+LL  + R +     
Sbjct: 62  ACLLTSTAPKSFDATTTKTPLIARCGSKSAVVVPLHTAVGKRFGLILLRNRERPL----H 117

Query: 160 WEIGLLAAYQANMFKSY-DVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            E+ L+A   + +F+ Y +V    D    L+ RE++ ++W SEGKTS EIA+ILG+S +T
Sbjct: 118 SEVALIAYDASIVFQRYFEVVLSLDSISGLSEREIQIVSWTSEGKTSSEIAIILGLSEHT 177

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VN+YIA+I+RK     R+  +A A+RN ++
Sbjct: 178 VNSYIAAILRKLQVVNRAQMVASALRNGLI 207


>gi|302867524|ref|YP_003836161.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302570383|gb|ADL46585.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 219

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 5/183 (2%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              DL    + D +V  D    ++  +  +       V      L    F+         
Sbjct: 41  AAVDLAGRLRPDVVVM-DVRMPVLDGIEATRLLAGAGVAHPVKVLVVTTFNLDEYVYEAL 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +       A++  G+  +     ++  +   +  L+  Y A +  +       D
Sbjct: 100 RAGASGFLLKDAPPAQLLHGIRTVASGAALLAPEVTRQ--LVGRYAARIRPAEGTPA--D 155

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  I++G  + EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R 
Sbjct: 156 VGLTPRELEVLRLIADGLANSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRT 215

Query: 244 NIV 246
            +V
Sbjct: 216 GLV 218


>gi|209809715|ref|YP_002265254.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
 gi|21311436|gb|AAM46717.1|AF452135_2 LuxR1 [Aliivibrio salmonicida]
 gi|208011278|emb|CAQ81719.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
          Length = 248

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 17/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++            +  +   +   ++L          K D ++  ++P        
Sbjct: 12  IITKINSSSSNDQINQCLIEVANTLNCEYYLFSIISNKSMIKPDVLILDNYPQKWRDHYD 71

Query: 92  LSEKDKYYNVLQRPTELFCPVF---------HTLPENITPPAGMDNRYCSLTFDVAR--I 140
            +   KY  ++        P+           T   N+   A     Y   +F +     
Sbjct: 72  ETNLIKYDPIVDYCFFNHSPILWDIFGKKTLKTNKPNVIQEAKSLGLYSGFSFPIHSVNG 131

Query: 141 RIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVECL 194
             G++      +    D L+         ++ A   + ++    +     +LT RE ECL
Sbjct: 132 SFGMISFAHSNKKQSTDCLFSTACMYIPLIIPALLDSYYRINKNNTESTHDLTKREKECL 191

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W  EGK+S EI++ILG +  TV  ++ +   K  T  R  +++ A+    +
Sbjct: 192 AWACEGKSSWEISIILGCTERTVAFHLTNSQTKLGTTNRCQSVSKAILTGAI 243


>gi|170697219|ref|ZP_02888313.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137839|gb|EDT06073.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 237

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 16/186 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMD 127
            ++ S++P   V              ++       P+              +     G+ 
Sbjct: 52  FMLQSNYPQTWVDRYVSQNYFAVDPTVRHGLSQMSPLIWRADSQTQSVEFWDEAEHHGLR 111

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHW 180
           + +C +        IGL+ +   G  I    L E G        +A Y  +M        
Sbjct: 112 HGWC-MPSISRTGAIGLVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHLLARFVP 170

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT RE E L W + GKT  EI  I+ +   TV  ++ + MRK     ++ A   A
Sbjct: 171 EYAVELTARERETLQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKA 230

Query: 241 VRNNIV 246
               ++
Sbjct: 231 AMLGLL 236


>gi|205372705|ref|ZP_03225516.1| two-component response regulator [Bacillus coahuilensis m4-4]
          Length = 212

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 17/135 (12%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    T      ++   +   + +   G  +L P+             +     + 
Sbjct: 90  VYPALEAGATSYMLKTSKASDIADAIRKTHGGQSILEPE-------------VTGKMMSR 136

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M K    H     ELT RE+E L  ++EGKT+ EI   L I+  TV  ++++I+ K   +
Sbjct: 137 MRKPSHPHE----ELTNREMEILLLMAEGKTNSEIGEDLFIAHKTVKTHVSNILSKLGVQ 192

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+ YA ++++V
Sbjct: 193 DRTQAVIYAFQHSLV 207


>gi|326440245|ref|ZP_08214979.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 224

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPAHELVQAIRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEEPVPDTLNSLTD 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|296134303|ref|YP_003641550.1| two component transcriptional regulator, LuxR family [Thermincola
           sp. JR]
 gi|296032881|gb|ADG83649.1| two component transcriptional regulator, LuxR family [Thermincola
           potens JR]
          Length = 214

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 4/117 (3%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y      V  +   +  ++    +I       I  +   + N   S     G   ELT 
Sbjct: 102 GYLLKDVSVDALISTIKAVYAGETVIAP----RITQMLLREVNNPVSGGPASGGLAELTA 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E +  I+EGK + EIA  L IS  TV N+I+SI RK     R+ A  YA++ N+
Sbjct: 158 REREIIRLIAEGKNNREIAAELFISEKTVKNHISSIFRKIKVHDRTQAALYAIKTNL 214


>gi|229087315|ref|ZP_04219457.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228696017|gb|EEL48860.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 186

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + ++     +I   R+ +  L
Sbjct: 50  CRVLVLTMYEHDEYLMAALRAGADGYLLKDSSSEQVVAAIRMVLQGDSVI-HPRMTK-KL 107

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q    +S       + ELT RE E L  + +G ++ EIA  L IS  TV  +I  I
Sbjct: 108 ITYHQQTKSESN------ENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 161

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK   K+RS A+ YAVRN +V
Sbjct: 162 FRKLNVKSRSQAVIYAVRNQLV 183


>gi|321314657|ref|YP_004206944.1| two-component response regulator YhcY [Bacillus subtilis BSn5]
 gi|320020931|gb|ADV95917.1| two-component response regulator (YhcY) [Bacillus subtilis BSn5]
          Length = 215

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 10/175 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-----ENITPPAGMDNRY 130
            ++    P  ++  +++ E D    + +   +        L      E++ P      + 
Sbjct: 40  RVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKA 99

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L        +  +     G   L   +     +     +M   +D    K ++LT RE
Sbjct: 100 YQLKDTEPEELVKTLRQVHAGEYKLSTAI-----MPHVLKHMKNQHDPEKEKYYQLTRRE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + LT I+ GK++ EIA  L IS  TV  ++++++ K     R+ A  +AV+ N+
Sbjct: 155 KDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209


>gi|241765736|ref|ZP_04763682.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241364396|gb|EER59519.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 301

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVE 192
               A     + +  P G  +    L   GL  +       + D    + +  LT RE E
Sbjct: 186 WLQSASGAGEIFMPMPGGGRLGARHLGASGLTESMLLLRLAAADTPPRQPEVPLTPRETE 245

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L W+++GKT+ +IA ILG+S  TVN ++  I  K   +TRS A A A +
Sbjct: 246 VLAWLAKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRSAATAVASK 295


>gi|257893584|ref|ZP_05673237.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260560505|ref|ZP_05832679.1| regulatory protein [Enterococcus faecium C68]
 gi|261209022|ref|ZP_05923427.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289565166|ref|ZP_06445618.1| response regulator LiaR [Enterococcus faecium D344SRF]
 gi|293563601|ref|ZP_06678047.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1162]
 gi|293569319|ref|ZP_06680617.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1071]
 gi|294615290|ref|ZP_06695166.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1636]
 gi|294619055|ref|ZP_06698550.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1679]
 gi|314939788|ref|ZP_07847008.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314942017|ref|ZP_07848877.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314950011|ref|ZP_07853304.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314953533|ref|ZP_07856445.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314992148|ref|ZP_07857595.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314995132|ref|ZP_07860248.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|257829963|gb|EEV56570.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260073507|gb|EEW61835.1| regulatory protein [Enterococcus faecium C68]
 gi|260077061|gb|EEW64783.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289162987|gb|EFD10835.1| response regulator LiaR [Enterococcus faecium D344SRF]
 gi|291588025|gb|EFF19875.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1071]
 gi|291591848|gb|EFF23481.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1636]
 gi|291594716|gb|EFF26098.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1679]
 gi|291604451|gb|EFF33939.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1162]
 gi|313590623|gb|EFR69468.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313593289|gb|EFR72134.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594456|gb|EFR73301.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313599194|gb|EFR78039.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313640928|gb|EFS05508.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313643658|gb|EFS08238.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 210

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T     I   +       R++  +      +       M +  D    +
Sbjct: 94  IEAGAAGYLLKTSTAHEIADAIRATQRGERVLEPE------VTTKMMEKMSRRNDPVLHE 147

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +
Sbjct: 148 --ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205

Query: 243 NNIV 246
           + +V
Sbjct: 206 HGLV 209


>gi|222084852|ref|YP_002543381.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722300|gb|ACM25456.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 248

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 89/250 (35%), Gaps = 36/250 (14%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYVGASHF 61
           E + S +  +  RSDL  +++ +                  +    R+    E  G+++ 
Sbjct: 14  ETKLSRLHRISGRSDLFPKLVSMQKLIDAQNFALYRLSGSGLPSKQRLVCELENWGSANP 73

Query: 62  LL--VRWDLFQEQKLDSIVSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           ++     + + E  ++ I  S  P         + +E   +    QR      P      
Sbjct: 74  VMNKAFVEAYGEAMIEHIEKSLLPLMWNGRDSDSTAETPDFAAFTQRLKPHLLPFAGV-- 131

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSY 176
                         +    +  +  G ++   K   +  D + E+ G        +    
Sbjct: 132 --------------AFPVRLGSVGNGYVVFTAKFMDVASDMIVELHGRSCQIMMELLSLD 177

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  A
Sbjct: 178 ERRSPAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQA 237

Query: 237 IAYAVRNNIV 246
           IA A+R   +
Sbjct: 238 IAKAIRFGYI 247


>gi|297583730|ref|YP_003699510.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297142187|gb|ADH98944.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 212

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 21/203 (10%)

Query: 55  YVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQR 104
            +G S +L  + D          ++  ++  S  P  ++  + + + D          + 
Sbjct: 14  RIGVSSYLTAQADIEVVAEAGDGEEAVTLALSHRPDIILMDLVMPKMDGIEATAAIRREW 73

Query: 105 PTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           P      V   L +    PA       Y   T     I   +        I+  +   ++
Sbjct: 74  PEAKIIIVTSFLDDEKVYPALEAGATSYMLKTSRAGDIAKAIRDTHAGQSILEPEVAGKL 133

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                    M + +     +  +LT RE+E L  +S G ++ EI   L IS  TV  +++
Sbjct: 134 ---------MSRMHKKPPAEHEQLTARELEVLELMSRGMSNQEIGDALYISLKTVKVHVS 184

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           +I+ K     R+ A+ YA + N+
Sbjct: 185 NILSKLGVHDRTQAVIYAFKENL 207


>gi|315647821|ref|ZP_07900922.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315276467|gb|EFU39810.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 222

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 4/136 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +          D     L   + R+  G++ L P    +L   +  + L    +++
Sbjct: 90  VLPAIRAGARGYLLKDIEPEELVAAIRRVFQGMVELHPDAAGLL---MTHVTLPEGAESS 146

Query: 172 MFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                     ++  +LT RE E L  I+ G  + EI+  L I+  TV  +++ ++ K   
Sbjct: 147 SGPGRQEEAVQELDKLTRREQEVLQLIASGMNNREISEALYITEKTVKTHVSHLLDKLGV 206

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A  YA+++ IV
Sbjct: 207 ADRTQAAIYALKHGIV 222


>gi|209551411|ref|YP_002283328.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537167|gb|ACI57102.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 251

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 10/178 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDN 128
           +  +  +  +  PF     +A   KD      +R  ++    F H L +  I P  G + 
Sbjct: 81  DPMVRYLAHAQRPFRWRESLAAFGKDA---QRRRMEQMMVDAFGHGLEDGYIFPVHGRNG 137

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
              SL+     + +  + +      + R   W +  L     +  ++ +     D  LT 
Sbjct: 138 ILGSLSLAGKPVELSPVEIA-LFEAVARKSFWRMLEL----KDEAQALETVLPADTPLTR 192

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L +++EG TS EI  +L IS +TV+ Y+  +  K   K R  A+A A R+ ++
Sbjct: 193 REMEILHYLAEGMTSMEIGKVLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHRLI 250


>gi|83716885|ref|YP_439427.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|257142551|ref|ZP_05590813.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650710|gb|ABC34774.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 234

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 14/183 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128
           ++ S++P         +      + ++       PV  +   N +  A        G+ +
Sbjct: 53  LMVSNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSASTNASKSAFWAEALSFGIAH 112

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183
            + S +   A   IG++ L  +   I     +    +  + AN+  +    +       D
Sbjct: 113 GWSSASR-GADGTIGVLSLSRRQDAIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 171

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A   
Sbjct: 172 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 231

Query: 244 NIV 246
            ++
Sbjct: 232 GML 234


>gi|27382417|ref|NP_773946.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355588|dbj|BAC52571.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 211

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 19/221 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-------KLDSIVSSDWPFD 85
           + R++  D        + A+ E    S++++       EQ        +  IV  D+   
Sbjct: 1   MKRILIADDHAVVRSGLRAIVET--QSNWIVAGEATNGEQAVGLAVETMSDIVIVDYSMP 58

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L+  + +S + K  ++     E+     H   E ++       R      D  +  I  +
Sbjct: 59  LMNGLEVSRRLKALDLRT---EVLILTMHEDEELLSEAVLAGVRGFLFKSDAKKHLISAI 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                GR      L E  LL  YQ N       H   D  LT RE   +  I+EG T+  
Sbjct: 116 EALLDGRPYFTSALVE-KLLHDYQLNK------HGRSDMLLTSREQSVVQLIAEGHTNRS 168

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++VIL +S  TV  + AS MRK    + +  + YA+R  +V
Sbjct: 169 MSVILKLSVKTVETHRASAMRKLGMSSTAELVRYAIRKKLV 209


>gi|322835285|ref|YP_004215311.1| LuxR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170486|gb|ADW76184.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602]
          Length = 251

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
            ++  R ++L  PV H + +N  P       +     +   + +  +       + + D 
Sbjct: 102 TSLQNRLSDLNKPVTHYMCDNNMPSGATVPLHLP---NGGFVTVTGIHTGAGHELDIHDV 158

Query: 159 LWEIGLLA-AYQANMFKSYDVH--WGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           L E+ LLA  +Q  +F  +D      +   L+ RE ECLTW +EG T+ EIA  L  S  
Sbjct: 159 LAELSLLALTFQECVFPLFDSSILTCRHVRLSKRERECLTWAAEGLTAKEIARKLNRSIA 218

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  ++ +  RK     R  A+  A+   ++
Sbjct: 219 TVTLHLNTAARKLGASNRVQAVVRAMHYRLL 249


>gi|76667926|dbj|BAE45354.1| two component response regulater [Bacillus subtilis]
          Length = 229

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 80/217 (36%), Gaps = 24/217 (11%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
           +   +  + +    +  ++   D   E     IV    P  ++  + +   +      ++
Sbjct: 15  FREGVKRILD-FEPTFEVVAEGDDGDEAA--RIVEHYHPDVVIMDINMPNVNG-VEATKQ 70

Query: 105 PTELFCP--------------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             EL+                V H L          +    +L   V  +  G   L PK
Sbjct: 71  LVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPK 130

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207
              +  + + E   LA    +    ++V+      L   T RE E L  +++GK++  I 
Sbjct: 131 ---VTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG 187

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L IS   V N++++I++K     R+ A+  A++N 
Sbjct: 188 ESLFISEKAVKNHVSNILQKINVNDRTQAVVVAIKNG 224


>gi|55823331|ref|YP_141772.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|116628130|ref|YP_820749.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|55739316|gb|AAV62957.1| response regulator (homolog to RR03 Spn) [Streptococcus
           thermophilus CNRZ1066]
 gi|116101407|gb|ABJ66553.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus
           thermophilus LMD-9]
 gi|312278734|gb|ADQ63391.1| Two-component response transcriptional regulator (CheY-like
           receiver and HTH DNA-binding domains), putative
           [Streptococcus thermophilus ND03]
          Length = 214

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136
           P  +V  + + E D     L+   E     +     +   E I P        Y   T  
Sbjct: 51  PDVVVMDLVMPELDGVQATLELLKEWPEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +  ++     I  +             N  K +D H     +LT RE + L  
Sbjct: 111 AAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPNLHDDLTARERDILAL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209


>gi|323704464|ref|ZP_08116042.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535926|gb|EGB25699.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 210

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            I+  D     V  +  ++  K  +   +   +F  +++     +         Y     
Sbjct: 49  DIILMDINMPNVNGIKAAKMIKSNDPKNKI--MFLTIYNDKEYLMEALKIGVEGYILKDA 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   + ++   G  I    + EI  L   +               +LT RE E L 
Sbjct: 107 DSDELIKAIRIISNGGVYIHPSLIREIESLEKNECKK------------DLTDREFEILN 154

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            I+EG ++ EIA  L +S  TV N++ +I RK   K R+ A  Y ++NN
Sbjct: 155 LIAEGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIYLLKNN 203


>gi|294811706|ref|ZP_06770349.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324305|gb|EFG05948.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 253

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 71  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 130

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 131 SGFLLKDAPAHELVQAIRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEEPVPDTLNSLTD 189

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 190 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 247


>gi|228942557|ref|ZP_04105092.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228975490|ref|ZP_04136045.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228982123|ref|ZP_04142415.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis Bt407]
 gi|228777661|gb|EEM25936.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis Bt407]
 gi|228784284|gb|EEM32308.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817150|gb|EEM63240.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326943209|gb|AEA19105.1| two-component response regulator yhcZ [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 215

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  + H  +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEHSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|300783016|ref|YP_003763307.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792530|gb|ADJ42905.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 4/170 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  +       V      L    F+             + +     
Sbjct: 52  DVVVMDVRMPVLDGIEATRLLAGAGVAHPVKVLVLTTFNLDEYVYEALRAGASGFLLKDA 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              R+  G+  +     ++  +       L    A   +        +  LT RE+E L 
Sbjct: 112 PPDRLLHGIRTVATGAALLDPEVTRR---LVGRHAARIRPV-PGAAPEVPLTPRELEVLR 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++EG ++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA R+ +
Sbjct: 168 LLAEGLSNSEIAERLVISQETVKTFVSRILTKLDLRDRVQAVVYAYRHGL 217


>gi|182439643|ref|YP_001827362.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326780308|ref|ZP_08239573.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178468159|dbj|BAG22679.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660641|gb|EGE45487.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 223

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D           + E   A   L V  +     +    V +  P  ++  + 
Sbjct: 1   MAIRVLLVDDQPLLRTGFRMILE---AEGDLAVVGEAGDGLQAIDQVRALQPDVVLMDIR 57

Query: 92  LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   D               P ++       L E +            L    A   +  
Sbjct: 58  MPRMDGVEATRQITGPGKDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAAELVQA 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L   +    LL  Y  ++    D        LT REVE L  ++ G ++ 
Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYADHLPSGEDPVPDALHTLTDREVEVLKLVARGLSNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|332523307|ref|ZP_08399559.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314571|gb|EGJ27556.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 213

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    L   +    +LQ+ +E    V  +  +N      ++             +  
Sbjct: 55  MDLVMP-ELGGVEATLEILQKWSEAKILVLTSYLDNEKIYPVIEAGA----------KGY 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++       I+   R    G LA         K+++ H     ELT RE + L  +++G 
Sbjct: 104 MLKTSSAAEILNAIRKVAKGQLAIETEVDKKIKAHNQHPDLHEELTAREYDILYLLAKGY 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 164 DNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHHLV 208


>gi|325124101|gb|ADY83624.1| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 238

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 83/237 (35%), Gaps = 24/237 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            DLL+  + +         + +    +G  +  + +       E K  +I+ +++P    
Sbjct: 6   EDLLSEFLIVKNEYQLFEIVKSTASKLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           +     +  K    +Q       P         T  E                   +R  
Sbjct: 64  KRYMEQQYVKIDPTVQHCMVSLQPLVWSSQFAKTQEEKDFWEEARSYGLNVGWAQSSRDF 123

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------------DFELTGR 189
           IG   +    R    D+L E    A Y    + S  VH               +  LT R
Sbjct: 124 IGTRGMLTLAR--SNDQLSEKEQKAQYTNMYWLSQTVHSSIAKVVNEVEFAQFNLYLTNR 181

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   AV   ++
Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|258510526|ref|YP_003183960.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477252|gb|ACV57571.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 231

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           E    +F  +    +           L   V ++  G      +  +     +  I   +
Sbjct: 93  ETEEMLFEAVKSGASGYVLKSVSPERLIECVRQVYEG------EPVVPSSLAMKMIAEFS 146

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                   S +       ELT RE E L ++S G ++ EIA  L IS NTV N++  I+ 
Sbjct: 147 RTAETRMPSSESV----TELTEREREVLQYLSAGASNKEIARALFISENTVRNHVRHILD 202

Query: 227 KTATKTRSGAIAYAVRNNI 245
           K     R+ A AYAVRN I
Sbjct: 203 KLHLSNRAQAAAYAVRNGI 221


>gi|229010064|ref|ZP_04167278.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229136711|ref|ZP_04265367.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228646748|gb|EEL02927.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228751197|gb|EEM01009.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 213

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + +L+    +I   R+ +  L
Sbjct: 76  CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVIAAIRMLYRGDSVI-HPRMTK-KL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q  M          + ELT RE E L  + +G ++ EIA  L IS  TV  +I  I
Sbjct: 134 ITYHQQKMK-----LESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K   K+RS A+ YAVRN +V
Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210


>gi|297161877|gb|ADI11589.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 223

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 76/222 (34%), Gaps = 11/222 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D           + E   A   L V  +     +    V +  P  ++  + 
Sbjct: 1   MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57

Query: 92  LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   D               P ++       L E +            L    A   +  
Sbjct: 58  MPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAHELVQA 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L   +    LL  Y  ++    +        LT REVE L  +++G ++ 
Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEEPVPDTLHTLTEREVEVLKLVAKGLSNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|322373351|ref|ZP_08047887.1| DNA-binding response regulator VraR [Streptococcus sp. C150]
 gi|321278393|gb|EFX55462.1| DNA-binding response regulator VraR [Streptococcus sp. C150]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136
           P  +V  + + E D     L+   E     +     +   E I P        Y   T  
Sbjct: 51  PDVVVMDLVMPELDGVQATLELLKEWPEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +  ++     I  +             N  K +D H     +LT RE + L  
Sbjct: 111 AAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDDLTARERDILAL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209


>gi|167577870|ref|ZP_02370744.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
          Length = 236

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 14/183 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128
           ++ S++P         +      + ++       PV  +   N +  A        G+ +
Sbjct: 55  LMVSNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSASTNASKSAFWAEALSFGIAH 114

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183
            + S +   A   IG++ L  +   I     +    +  + AN+  +    +       D
Sbjct: 115 GWSSASR-GADGTIGVLSLSRRQDAIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 173

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A   
Sbjct: 174 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 233

Query: 244 NIV 246
            ++
Sbjct: 234 GML 236


>gi|257885240|ref|ZP_05664893.1| regulatory protein [Enterococcus faecium 1,231,501]
 gi|257821092|gb|EEV48226.1| regulatory protein [Enterococcus faecium 1,231,501]
          Length = 210

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T     I   +       R++  +      +       M +  D    +
Sbjct: 94  IEAGAAGYLLKTSTAHEIADAIRATQRGERVLEPE------VTTKMMEKMSRRNDPVLHE 147

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +
Sbjct: 148 --ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205

Query: 243 NNIV 246
           + +V
Sbjct: 206 HGLV 209


>gi|229015963|ref|ZP_04172924.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229022180|ref|ZP_04178730.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228739111|gb|EEL89557.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228745323|gb|EEL95364.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 213

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   ++      +       + Y        ++   + +L+    +I   R+ +  L
Sbjct: 76  CRVLVFTMYEHDEYLMDALQSGADGYLLKDSSSEQVVAAIRMLYQGDSVI-HPRMTK-KL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +Q  M          + ELT RE E L  + +G ++ EIA  L IS  TV  +I  I
Sbjct: 134 ITYHQQKMK-----LESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K   K+RS A+ YAVRN +V
Sbjct: 189 FKKLNVKSRSQAVIYAVRNQLV 210


>gi|55821406|ref|YP_139848.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55737391|gb|AAV61033.1| response regulator (homolog to RR03 Spn) [Streptococcus
           thermophilus LMG 18311]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136
           P  +V  + + E D     L+   E     +     +   E I P        Y   T  
Sbjct: 51  PDVVVMDLVMPELDGVQATLELLKEWPEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +  ++     I  +             N  K +D H     +LT RE + L  
Sbjct: 111 AAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPNLHDDLTARERDILAL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209


>gi|167590019|ref|ZP_02382407.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 233

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 86/234 (36%), Gaps = 20/234 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGA---SHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
             +L  +           ++ A    VG    +++L   W L    +    + +++P   
Sbjct: 2   EQILFDLESTRSEHDAYEKIAAAVREVGFEYSAYYLHTPWPL---SRPKIYMLTNFPEAW 58

Query: 87  VRCMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRY-CSLTFDVAR 139
            +    +       V++   + + P      VF   P           RY  SL      
Sbjct: 59  QQRYHAARYVDVDPVIRHARQSYAPIIWSDAVFEETPHLWQEAQAHGLRYGYSLAAVSNC 118

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVE 192
              G+M +      + R  L +  L        A           +      ELT REVE
Sbjct: 119 GVAGMMSMARSHGPLTRRELQQQELKMRWLVNAAHLAITRAVLPKLSPDNAIELTAREVE 178

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W+++GKT+ EI++I+ IS  TVN ++ + + K  T   + A+A A    ++
Sbjct: 179 VLKWVADGKTASEISMIMLISVYTVNFHVKNAVTKLKTSNTTAAVARAAMLGLL 232


>gi|238027886|ref|YP_002912117.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877080|gb|ACR29413.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae
           BGR1]
          Length = 243

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
             P  I     +     SL   +    I + L     + I      E  + AA    +  
Sbjct: 116 GDPAAIRTVLQLKCEDESLHSALILSFIAMHLHAALTQKIPDRSHGEARMPAAETDGVGS 175

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +     G+ F+ T +E E + W+ EGKT+ EI  IL +S  TV  ++ ++  K     R+
Sbjct: 176 AD----GEGFQFTRKESEVVKWVVEGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRA 231

Query: 235 GAIAYAVRNNIV 246
            A+A   R  ++
Sbjct: 232 QAVAKVSRLGLI 243


>gi|228477324|ref|ZP_04061962.1| DNA-binding response regulator [Streptococcus salivarius SK126]
 gi|228251343|gb|EEK10514.1| DNA-binding response regulator [Streptococcus salivarius SK126]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136
           P  +V  + + E D     L+   E     +     +   E I P        Y   T  
Sbjct: 51  PDVVVMDLVMPELDGVQATLELLKEWPEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +  ++     I  +             N  K +D H     +LT RE + L  
Sbjct: 111 AAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDDLTARERDILAL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209


>gi|313890015|ref|ZP_07823651.1| response regulator receiver domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121606|gb|EFR44709.1| response regulator receiver domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 213

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    L   +    +LQ+ +E    V  +  +N      ++             +  
Sbjct: 55  MDLVMP-ELDGVEATLEILQKWSEAKILVLTSYLDNEKIYPVIEAGA----------KGY 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++       I+   R    G LA         K+++ H     ELT RE + L  +++G 
Sbjct: 104 MLKTSSAAEILNAIRKVAKGQLAIETEVDKKIKAHNQHPDLHEELTAREYDILYLLAKGY 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 164 DNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHHLV 208


>gi|288904712|ref|YP_003429933.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|306830715|ref|ZP_07463880.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977633|ref|YP_004287349.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731437|emb|CBI12989.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304427223|gb|EFM30330.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177561|emb|CBZ47605.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 79/208 (37%), Gaps = 20/208 (9%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
            +   + +    E VG +   L   +L  E K D +V      DLV    +S  +    +
Sbjct: 19  GLKSFLNLQPDVEVVGEAGNGLDGINLALELKPDVVV-----MDLVMP-EMSGVEATLKL 72

Query: 102 LQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           L+   E    V  +  +N             Y   T   A I   +  +      I  + 
Sbjct: 73  LEEWKEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIQKVARGELAIETE- 131

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                          K++D+      +LT RE + L  +++G  +  IA  L IS  TV 
Sbjct: 132 ----------VDKKIKAHDMQPELHEDLTARERDILRLLAKGYDNQTIADELFISLKTVK 181

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++++I+ K     R+ A+ YA ++++V
Sbjct: 182 THVSNILAKLEVDDRTQAVVYAFKHHLV 209


>gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
 gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
          Length = 304

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           L E +  P     R    +F +       + L P GR+   + L+ +   A  +A   ++
Sbjct: 181 LGEWLDGPHSSGERR--KSFMLGLSENLAVQLHPLGRVGPDENLFRV--TAEDEAGQVQA 236

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                   FELT RE E L WI++GK++ +I  ILG+S  TVN ++  I  K   + R+ 
Sbjct: 237 ----LQGSFELTQREAEVLIWIAKGKSNKDIGEILGLSPRTVNKHLEQIFVKLGVENRAS 292

Query: 236 AIAYAVR 242
           A   A  
Sbjct: 293 AAVRAAE 299


>gi|83956361|ref|ZP_00964786.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter
           sp. NAS-14.1]
 gi|83839409|gb|EAP78592.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter
           sp. NAS-14.1]
          Length = 269

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 21/241 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDW 82
              + S+  +        +     +  L+   G  +  +         +   + I+ + +
Sbjct: 29  RSMSLSEDFSSRAKSTPELDLETTLNDLSTLYGLKNITYFSASIPYAND--DEHILITTY 86

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITPPAGMD 127
               V      +      VL   +    PV               F    E      G+ 
Sbjct: 87  STTWVEHYFSLKYQDVDPVLHAGSRSLLPVDWGHLSTTGETSRNFFGEAKEYGIGETGLT 146

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFE 185
                +  + A I +   L      +  R+ + +    A    +         H     +
Sbjct: 147 IPVRGMLGEEAMISLNSDLRARDWELFCREMISDFTYFAHLLHDSVTRSRIHQHETDHPQ 206

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L W + GKT+ E  +ILG++  TV+ Y+ +   K    T++ A+A+AV+  +
Sbjct: 207 LTKREAQVLRWAARGKTAWETGIILGLTEKTVSFYLGNACAKLKVATKTQAVAFAVKERL 266

Query: 246 V 246
           +
Sbjct: 267 I 267


>gi|21220150|ref|NP_625929.1| two-component response regulator [Streptomyces coelicolor A3(2)]
 gi|256788738|ref|ZP_05527169.1| two-component response regulator [Streptomyces lividans TK24]
 gi|289772632|ref|ZP_06532010.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|6119696|emb|CAB59507.1| putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289702831|gb|EFD70260.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 223

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D           + E   A   L V  +     +    V +  P  ++  + 
Sbjct: 1   MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57

Query: 92  LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   D               P ++       L E +            L    A   +  
Sbjct: 58  MPRMDGVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALKAGASGFLLKDAPANELVQA 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L   +    LL  Y  ++    +        LT REVE L  ++ G ++ 
Sbjct: 118 IRVVANGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLHTLTDREVEVLKLVARGLSNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|312864942|ref|ZP_07725172.1| response regulator receiver domain protein [Streptococcus downei
           F0415]
 gi|311099562|gb|EFQ57776.1| response regulator receiver domain protein [Streptococcus downei
           F0415]
          Length = 213

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 9/166 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  +V  + + E D     L    E        L       + +DN       +    + 
Sbjct: 50  PDVVVMDLVMPEMDGVEATLAILKEWKAAKILVLT------SYLDNEKIYPVIEAG-AKG 102

Query: 143 GLMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            ++       I+   R    G +A         K +D H     +LT RE + L  +++G
Sbjct: 103 YMLKTSSAAEILNSIRKVAQGQVAIETEVDQKIKYHDQHPDLHDDLTARERDVLALLAKG 162

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  IA  L IS  TV  ++++I+ K   + R+ A+ YA ++N+V
Sbjct: 163 YDNQTIADELFISLKTVKTHVSNILAKLNVEDRTQAVVYAFQHNLV 208


>gi|295402434|ref|ZP_06812387.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112712|ref|YP_003991028.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975525|gb|EFG51150.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217813|gb|ADP76417.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 210

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 14/170 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136
           P  ++  + + E D        + Q P      V   L +    PA       Y   T  
Sbjct: 48  PDIILMDLVMPEMDGIEATKQIIAQWPEAKIIVVTSFLDDEKVYPALEAGATSYMLKTSK 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   +   F    ++  +   ++       A M +  ++   +  ELT RE+E L  
Sbjct: 108 ANEIANAIRATFYGQSVLEPEVTNKV------MAKMKQKKELLPHE--ELTNREMEVLLL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++GKT+ EIA  L I+  TV  ++++I+ K   + R+ A+ YA ++++V
Sbjct: 160 MAQGKTNQEIADELFIAVKTVKVHVSNILSKLGVQDRTQAVIYAFKHSLV 209


>gi|308070694|ref|YP_003872299.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
 gi|305859973|gb|ADM71761.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
          Length = 233

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +A+   N F+          ELT RE+E L  +++GK++ +IA  L I   TV  ++ 
Sbjct: 149 SQVASKMMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVT 208

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           +++ K   + R+ A  YA +N +
Sbjct: 209 NLLAKLGVEDRTQAAIYAYKNGL 231


>gi|306832892|ref|ZP_07466025.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304424967|gb|EFM28100.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 79/208 (37%), Gaps = 20/208 (9%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
            +   + +    E VG +   L   +L  E K D +V      DLV    +S  +    +
Sbjct: 19  GLKSFLNLQPDVEVVGEAGNGLDGINLALELKPDVVV-----MDLVMP-EMSGVEATLKL 72

Query: 102 LQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           L+   E    V  +  +N             Y   T   A I   +  +      I  + 
Sbjct: 73  LEEWKEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIQKVARGELAIETE- 131

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                          K++D+      +LT RE + L  +++G  +  IA  L IS  TV 
Sbjct: 132 ----------VDKKIKAHDMQPELHDDLTARERDILRLLAKGYDNQTIADELFISLKTVK 181

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++++I+ K     R+ A+ YA ++++V
Sbjct: 182 THVSNILAKLEVDDRTQAVVYAFKHHLV 209


>gi|238926042|ref|YP_002939560.1| two-component response regulator (extracellular proteinase response
           regulator) [Eubacterium rectale ATCC 33656]
 gi|238877719|gb|ACR77426.1| two-component response regulator (extracellular proteinase response
           regulator) [Eubacterium rectale ATCC 33656]
 gi|291526556|emb|CBK92143.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale DSM 17629]
 gi|291529198|emb|CBK94784.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale M104/1]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 8/154 (5%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-NRYCSLTFDVARIRIGLMLLFPKGR 152
           E  K     +   ++     H   E +     +  N Y     + A ++  +  +     
Sbjct: 65  EVLKALKDRKSKVKVLVLTVHNETEYLMKAVDIGINGYVLKDSESAELKKAIFTIADGET 124

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            I      +  L+ A  + M +  +     D  LT RE+E L  ++ GK + +IA  + I
Sbjct: 125 YI------QPSLIPALNSKMIQKNEDELKID-ALTKREMEVLKEMAVGKFNRDIAKEMKI 177

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV N+I+SI +K     R+ A  +A+RNNI+
Sbjct: 178 SERTVKNHISSIFKKLEVTDRTQAAVFAIRNNII 211


>gi|29833213|ref|NP_827847.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610335|dbj|BAC74382.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D           + E   A   L V  +     +    V +  P  ++  + 
Sbjct: 1   MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57

Query: 92  LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   D               P ++       L E +            L    A   +  
Sbjct: 58  MPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQA 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L   +    LL  Y  ++    +        LT REVE L  ++ G ++ 
Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYAGHLPSGDEPVPDTLHTLTEREVEVLKLVARGLSNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|254410670|ref|ZP_05024449.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182876|gb|EDX77861.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 216

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 32/221 (14%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTEL 108
           +++Y+  S + +V  +  QE    S++    P  +V  + + + + Y     V +RP   
Sbjct: 1   MSDYLEMSGYSVVTAEDGQEAL--SLIDKYHPHLIVTDINMPKLNGYELVQQVRKRPAFR 58

Query: 109 FCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
             PV       +  E I       + Y    F++  +   +  L  + +++      E+ 
Sbjct: 59  LLPVVFLTERSSTEERIKGYQLGCDLYLPKPFEMKELSAVIRNLLERSQMMQA----ELR 114

Query: 164 LLAAYQANMFKSYDVHWGKD------------------FELTGREVECLTWISEGKTSDE 205
             +        S +                          LT RE + L  ++ G ++ E
Sbjct: 115 FSSTDTGPSTPSPETTEATPKSESTPRAIASPTSPSNVLHLTQREQQVLDLLTTGLSNSE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   L +S  T+  Y++S++RKT T  R+  + +A+ N++V
Sbjct: 175 IGNKLHLSPRTIEKYVSSLLRKTETSNRAEIVRFALENHLV 215


>gi|116872424|ref|YP_849205.1| LuxR family DNA-binding response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741302|emb|CAK20424.1| DNA-binding response regulator; LuxR family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 212

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 16/168 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140
            DLV    +   +    ++Q+  E    +  +  ++      ++    S    T   + I
Sbjct: 53  MDLVMD-EMDGIEATKEIMQKWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198
              +   +    ++  +              M +       K+    LT RE E L  I+
Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|95108205|emb|CAD17929.2| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Ralstonia
           solanacearum GMI1000]
          Length = 238

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPP--AGMDN 128
           ++ +++P         +        + +      P+      F  +P         G+  
Sbjct: 54  VLLNNYPQAWRARYLEAGYLHVDPSVAQACRSQAPIVWSDRLFQDVPALWDEAKAHGLRV 113

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWG 181
            +   + D +    G++ L      +    L E       +  +A    +     DV   
Sbjct: 114 GWAQSSLD-SLGVGGMLSLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGY 172

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K     ++ A+  A 
Sbjct: 173 SDDNLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAA 232

Query: 242 RNNIV 246
               +
Sbjct: 233 MLGYL 237


>gi|14993797|gb|AAK73190.1| transcriptional activator CsaR [Pseudomonas chlororaphis subsp.
           aureofaciens]
          Length = 241

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDF 184
           +L        + ++ +  +   I    L EI L       LA  +      +     +  
Sbjct: 121 TLPIHTPDSALSVLSVARECTAISAVELEEIRLRLRCIIELATMRLGEL-GHPSSQAEQL 179

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE E L W ++GK+S EIA+ILGIS NTVN ++  I +K     ++ A AYA    
Sbjct: 180 ELSAREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVLG 239

Query: 245 IV 246
           ++
Sbjct: 240 LI 241


>gi|315302505|ref|ZP_07873346.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596]
 gi|313629123|gb|EFR97415.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596]
          Length = 212

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 16/168 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140
            DLV    +   +    ++Q+  E    +  +  ++      ++    S    T   + I
Sbjct: 53  MDLVMD-EMDGIEATKEIMQKWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198
              +   +    ++  +              M +       K+    LT RE E L  I+
Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|308175040|ref|YP_003921745.1| transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607904|emb|CBI44275.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328555009|gb|AEB25501.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           TA208]
 gi|328913364|gb|AEB64960.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           LL3]
          Length = 210

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++
Sbjct: 149 LTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|259046510|ref|ZP_05736911.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259036675|gb|EEW37930.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 211

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 14/174 (8%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCS 132
            S  P  ++  + + E D      +   +      +    F    +           Y  
Sbjct: 44  LSYKPDIILMDLVMPEMDGIEATKEILHQWPEAKIIILTSFIDDEKVFPAINAGAKSYIL 103

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            T   ++I   +   +    +       ++        N  +    H+  D +LT RE+E
Sbjct: 104 KTSSASQIAKAIRDTYQGDGVFEPQVTDKL-------VNRIQMKQQHFPHD-DLTQRELE 155

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I++GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ ++
Sbjct: 156 VLLLIAQGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHQLI 209


>gi|253575241|ref|ZP_04852579.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845238|gb|EES73248.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 221

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 44/83 (53%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +A+   N F+   V      ELT RE++ L  +++GK++ +IA  L I   TV  ++ 
Sbjct: 137 SQVASKMMNRFRQPKVEAPAHEELTEREMDVLRLLAQGKSNQDIADELIIGIKTVKFHVT 196

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           +I+ K   + R+ A  YA +N +
Sbjct: 197 NILAKLGVEDRTQAAIYAYKNGL 219


>gi|154687422|ref|YP_001422583.1| YvqC [Bacillus amyloliquefaciens FZB42]
 gi|154353273|gb|ABS75352.1| YvqC [Bacillus amyloliquefaciens FZB42]
          Length = 210

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++
Sbjct: 149 LTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|329117459|ref|ZP_08246176.1| response regulator receiver domain protein [Streptococcus
           parauberis NCFD 2020]
 gi|326907864|gb|EGE54778.1| response regulator receiver domain protein [Streptococcus
           parauberis NCFD 2020]
          Length = 213

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 81/207 (39%), Gaps = 18/207 (8%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
            +   + M    E +G +       DL  E + D +V      DLV    +   +   ++
Sbjct: 18  GLKSFLNMQKDIEVIGEASNGRQGIDLALELRPDVLV-----MDLVMP-EMGGVEATLDI 71

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           L + TE    V  +  +N      +D             +  ++       I+   +   
Sbjct: 72  LSKWTEAKVLVLTSYLDNEKIYPVIDAGA----------KGYMLKTSSAAEILNAIKKVA 121

Query: 162 IGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            G LA         K +D +     ELT RE + L  +++G  +  IA  L IS  TV  
Sbjct: 122 KGQLAIETEVDKKIKEHDKNPELHEELTAREFDILYLLAKGYDNQTIADELFISLKTVKT 181

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++I+ K     R+ A+ YA +++IV
Sbjct: 182 HVSNILSKLDVDDRTQAVVYAFQHHIV 208


>gi|17548999|ref|NP_522339.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 248

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 92/256 (35%), Gaps = 30/256 (11%)

Query: 7   QVNIVL-NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++ IV+ N +++    F     + SD+   +      + +           G    L + 
Sbjct: 6   EIEIVMKNWQEDLLDIFSDAQASTSDVFEHIEAAALALGFEHVA------YGFKAPLPLS 59

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPEN 119
                      ++ +++P         +        + +      P+      F  +P  
Sbjct: 60  EPKV-------VLLNNYPQAWRARYLEAGYLHVDPSVAQACRSQAPIVWSDRLFQDVPAL 112

Query: 120 ITPP--AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-------IGLLAAYQA 170
                  G+   +   + D +    G++ L      +    L E       +  +A    
Sbjct: 113 WDEAKAHGLRVGWAQSSLD-SLGVGGMLSLSRSCEPLSARELAENTRRMQWLAHMAHVAL 171

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +     DV    D  LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K   
Sbjct: 172 SRLLRADVAGYSDDNLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHA 231

Query: 231 KTRSGAIAYAVRNNIV 246
             ++ A+  A     +
Sbjct: 232 VNKTAAVVRAAMLGYL 247


>gi|302560338|ref|ZP_07312680.1| nitrate/nitrite response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477956|gb|EFL41049.1| nitrate/nitrite response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 267

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 149 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 206

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 207 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 264


>gi|329944887|ref|ZP_08292914.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529698|gb|EGF56594.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 234

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 6/134 (4%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSY 176
            +      ++   SL   + +   G ++L P    I+ D  RLW  G     ++   ++ 
Sbjct: 101 GVRGFVAKEDGASSLAGAIRQAVAGNLVLSPTSSAIISDQARLWANGSAQPSESTSKQTQ 160

Query: 177 DVHWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        L+ RE E LT + + KT+ +IA  L +S  TV  ++++I+ K   + 
Sbjct: 161 TQQSASPLPHGIPLSEREREVLTLVVDAKTNKQIATRLRLSEATVKTHVSAIIAKLGVQD 220

Query: 233 RSGAIAYAVRNNIV 246
           R GA+ YA+++N+V
Sbjct: 221 RVGAVVYALQHNLV 234


>gi|195978655|ref|YP_002123899.1| TCS response regulator YvqC-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975360|gb|ACG62886.1| TCS response regulator YvqC-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 197

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    L   +    +L +  E    V  +  +N      +D             +  
Sbjct: 39  MDLVMP-ELGGVEATLEILSKWKEARVLVLTSYLDNEKIYPVIDAGA----------KGY 87

Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++       I+   R    G LA         K++D       ELT RE + L  +++G 
Sbjct: 88  MLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPDLHEELTAREYDILHLLAKGY 147

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 148 DNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFRHHLV 192


>gi|116878316|gb|ABK32012.1| transcriptional regulator [Burkholderia vietnamiensis]
 gi|116878319|gb|ABK32014.1| transcriptional regulator [Burkholderia vietnamiensis]
          Length = 237

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 75/235 (31%), Gaps = 20/235 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDL 86
           R   L             +   A    +G  H  F L R  L    K   ++ S++P   
Sbjct: 5   REKYLNGFATAKSEADVFLEFSADVRALGFDHCSFGL-RIPL-PISKPQFMLQSNYPQTW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVA 138
           V              ++       P+                    G+ + +C +     
Sbjct: 63  VERYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCVQFWEEADQHGLRHGWC-MPSVSR 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
              IGL+ +   G  I    L E G         A Y  +M     +      ELT RE 
Sbjct: 122 TGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYTVELTVRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W + GKT  EI  I+ +   TV  ++ + MRK     ++ A   A    ++
Sbjct: 182 EALQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236


>gi|322516397|ref|ZP_08069322.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322125130|gb|EFX96523.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 214

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136
           P  +V  + + E D     L+   E     +     +   E I P        Y   T  
Sbjct: 51  PDVVVMDLVMPELDGVQATLELLKEWPEARILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +  ++     I  +             N  K +D H     +LT RE + L  
Sbjct: 111 AAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDDLTARERDILAL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209


>gi|284801354|ref|YP_003413219.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578]
 gi|284994496|ref|YP_003416264.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923]
 gi|284056916|gb|ADB67857.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578]
 gi|284059963|gb|ADB70902.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923]
          Length = 212

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140
            DLV    +   +    ++Q   E    +  +  ++      ++    S    T   + I
Sbjct: 53  MDLVMD-EMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198
              +   +    ++  +              M +       K+    LT RE E L  I+
Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLGVQDRTQAAIYAFKHDLV 209


>gi|239940109|ref|ZP_04692046.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986597|ref|ZP_04707261.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291443540|ref|ZP_06582930.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346487|gb|EFE73391.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D           + E   A   L V  +     +    V +  P  ++  + 
Sbjct: 1   MAIRVLLVDDQPLLRTGFRMILE---AEGDLAVVGEAGDGLQAIDQVRALQPDVVLMDIR 57

Query: 92  LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   D               P ++       L E +            L    A   +  
Sbjct: 58  MPRMDGVEATRQITGPGKDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAAELVQA 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L   +    LL  Y  ++    +        LT REVE L  ++ G ++ 
Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYADHLPSGEEPVPDALHTLTDREVEVLKLVARGLSNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 177 EIAAELFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|228990549|ref|ZP_04150514.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM
           12442]
 gi|228996650|ref|ZP_04156289.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17]
 gi|229004298|ref|ZP_04162099.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4]
 gi|228757159|gb|EEM06403.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4]
 gi|228763282|gb|EEM12190.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17]
 gi|228769075|gb|EEM17673.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM
           12442]
          Length = 210

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 14/180 (7%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAG 125
           +K   +  +  P  ++  + + E D        + + P      V  F    +       
Sbjct: 37  RKGSELALALKPDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEA 96

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T   + I   +   +    ++      E  +     + M +  +    +D  
Sbjct: 97  GATSYLLKTSRASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHED-- 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 149 LTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|260437679|ref|ZP_05791495.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM
           2876]
 gi|292809905|gb|EFF69110.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM
           2876]
          Length = 218

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + S   DV  ++  +  ++   + I  +       L  +        D    +   LT
Sbjct: 100 DGFISKDCDVEILKRAVYSVYEGKKYIQPE-------LEKFLNINVTQEDDPEERIKNLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE+E L  IS+G  + +I+  L I+  TV N+++SI RK     R+ A  +AV+N
Sbjct: 153 KREIEVLLLISKGYVNKDISNELKITERTVKNHVSSIFRKINVNDRTQAAVFAVKN 208


>gi|325291914|ref|YP_004277778.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059767|gb|ADY63458.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 248

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 32/243 (13%)

Query: 22  FVSHLPTRSDLLARMIPL---------------DCTVSWTMRMYALTEYVG--ASHFLLV 64
               + +RSDL  +++ +                       ++    E  G  A+     
Sbjct: 19  RSPVVTSRSDLFPKLVAMQKLVGARNFVVTKAAASGFPNKKKLTCELENWGMNAAEQSAQ 78

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 +  LD I +S  P              + ++   P      +   +  +  P A
Sbjct: 79  FIRAVGDILLDHIETSLLPVIWRNK----NAGGFADLPDVPA-----LMRRIENDTLPYA 129

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKD 183
           G      +L   +  I  G ++      ++  + + E  +       +M    +      
Sbjct: 130 G-----LALPVRLGTIGNGYIVFCGSNLVLDNEVVIEQHIKCCEIMVDMLALDERKVAPS 184

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+ CL    +G+ S+EIAV LG+S +TVN Y+ S   K  +  R  AIA A+R 
Sbjct: 185 EALSEREIACLQLAGDGRISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRL 244

Query: 244 NIV 246
             +
Sbjct: 245 GYI 247


>gi|27376354|ref|NP_767883.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349494|dbj|BAC46508.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 242

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 21/234 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPFDLVRC 89
           D +  +  L    S    M       G  +F       L  E   +++++   P   +  
Sbjct: 10  DFVETVRQLPDVASILDAMSRTLGQHGFDYFCSSYVAPLSTESPREAVLAERLPAGFLDM 69

Query: 90  MALSEKDKYYNVLQRPTELFCPV--FHTLPENITPP-------------AGMDNRYCSLT 134
            + ++   +   L+       P   F   P +                   +D     + 
Sbjct: 70  YSEAQYVWHDPALRYCRTTLQPFRWFREAPYDPEREPRAVELVRRARDFGMVDGVVIPVI 129

Query: 135 FDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQ-ANMFKSYDVHWGKDFELTGREVE 192
               R      + F    I L +R L  + L+A Y    + K   +       L+ RE E
Sbjct: 130 SPAGRTGQ---VWFGGAEIDLPERDLPALHLMALYAFDRVLKLRGLPAAPQLALSLRERE 186

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LT  + G++SDEIA  L I+  TV  +I S  +K    TR+ A+  A+R+ I+
Sbjct: 187 VLTLAAVGRSSDEIADALAITGRTVKAHIKSCCKKLGAATRTQAVMIAMRDRII 240


>gi|260557627|ref|ZP_05829841.1| transcriptional activator protein phzR [Acinetobacter baumannii
           ATCC 19606]
 gi|260408800|gb|EEX02104.1| transcriptional activator protein phzR [Acinetobacter baumannii
           ATCC 19606]
          Length = 238

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 87/237 (36%), Gaps = 24/237 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            DLL+  + +         + +    +G  +  + +       E K  +I+ +++P    
Sbjct: 6   EDLLSAFLVVKNEYQLFEIVKSTASRLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITPPAGMDNRYCSLTFDVARIR 141
           +     +  K    +Q       P+        T  E                   +R  
Sbjct: 64  KRYVERQYVKIDPTVQHCMASLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDF 123

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-----------YDVHWGK-DFELTGR 189
           IG   +    R    D+L E    A Y    + +            DV + K +  LT R
Sbjct: 124 IGTRGMLTLAR--SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNR 181

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  A   AV   ++
Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|294629677|ref|ZP_06708237.1| nitrate/nitrite response regulator [Streptomyces sp. e14]
 gi|292833010|gb|EFF91359.1| nitrate/nitrite response regulator [Streptomyces sp. e14]
          Length = 267

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 149 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 206

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 207 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 264


>gi|20808107|ref|NP_623278.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|254479031|ref|ZP_05092387.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516692|gb|AAM24882.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035027|gb|EEB75745.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 208

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 168 YQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           Y             ++    ELT RE+E L  +S+G ++ EIA  L +S  TV N++ +I
Sbjct: 124 YIHPSLMQEIEDSNEELLRKELTPREIEILKLLSQGYSNKEIAQKLFLSEKTVKNHVYNI 183

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK   K R+ A  Y ++N  +
Sbjct: 184 FRKLGVKDRTQAAIYMLKNQTI 205


>gi|225871059|ref|YP_002747006.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225700463|emb|CAW94880.1| response regulator protein [Streptococcus equi subsp. equi 4047]
          Length = 213

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    L   +    +L +  E    V  +  +N      +D             +  
Sbjct: 55  MDLVMP-ELGGVEATLEILSKWKEARVLVLTSYLDNEKIYPVIDAGA----------KGY 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++       I+   R    G LA         K++D       ELT RE + L  +++G 
Sbjct: 104 MLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPNLHEELTAREYDILHLLAKGY 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFRHHLV 208


>gi|222106725|ref|YP_002547516.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4]
 gi|221737904|gb|ACM38800.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4]
          Length = 307

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 80/246 (32%), Gaps = 30/246 (12%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS------- 80
                + R+            M +  + +G  +F    + + Q   L++   +       
Sbjct: 44  PLDRFIMRLNAAVSAAEMKAVMESSIKSLGYKYF---SYHILQTPVLNATNETRHTFGIN 100

Query: 81  DWPFDLVRCMALSE----------KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++P + V   A                     +    +           +   A      
Sbjct: 101 NYPEEWVERYASERYVYCDPIVGISLSRKTPFRWSDAIDSDKLTEEERCVIEDAAKRGIV 160

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL----------AAYQANMFKSYDVHW 180
             LT  +      L ++        +D L E  L+          A            + 
Sbjct: 161 NGLTVPLMSRHGELAIMTVIPDEKFQDSLPEAHLIHIISQFFHSCALPVVMEEHLIGSYR 220

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   L+ RE E + W+S+GK+S EIA ILGIS  +V  Y+ S+ RK     R+ A+  A
Sbjct: 221 RRRSFLSAREKETVIWVSKGKSSWEIAKILGISEKSVEFYMESVKRKLEAVNRTQAVVKA 280

Query: 241 VRNNIV 246
           +   ++
Sbjct: 281 IMLGLI 286


>gi|227518222|ref|ZP_03948271.1| LuxR family response regulator [Enterococcus faecalis TX0104]
 gi|229548209|ref|ZP_04436934.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200]
 gi|293382160|ref|ZP_06628103.1| DNA-binding response regulator VraR [Enterococcus faecalis R712]
 gi|293388529|ref|ZP_06633033.1| DNA-binding response regulator VraR [Enterococcus faecalis S613]
 gi|307268836|ref|ZP_07550203.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307272676|ref|ZP_07553924.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307275104|ref|ZP_07556258.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307278542|ref|ZP_07559614.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307287394|ref|ZP_07567453.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307290831|ref|ZP_07570725.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312900387|ref|ZP_07759697.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312902923|ref|ZP_07762120.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312905744|ref|ZP_07764766.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909060|ref|ZP_07767920.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312952200|ref|ZP_07771078.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|227074318|gb|EEI12281.1| LuxR family response regulator [Enterococcus faecalis TX0104]
 gi|229306688|gb|EEN72684.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200]
 gi|291080443|gb|EFE17807.1| DNA-binding response regulator VraR [Enterococcus faecalis R712]
 gi|291082133|gb|EFE19096.1| DNA-binding response regulator VraR [Enterococcus faecalis S613]
 gi|306498140|gb|EFM67663.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306501567|gb|EFM70863.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504779|gb|EFM73977.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306508222|gb|EFM77338.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306510671|gb|EFM79693.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514840|gb|EFM83388.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310628223|gb|EFQ11506.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310629856|gb|EFQ13139.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310633695|gb|EFQ16978.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311290622|gb|EFQ69178.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311292477|gb|EFQ71033.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315028155|gb|EFT40087.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315032281|gb|EFT44213.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315036239|gb|EFT48171.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145424|gb|EFT89440.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315148783|gb|EFT92799.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151677|gb|EFT95693.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315154523|gb|EFT98539.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315156392|gb|EFU00409.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315160117|gb|EFU04134.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315163264|gb|EFU07281.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165932|gb|EFU09949.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315169340|gb|EFU13357.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315171806|gb|EFU15823.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315174757|gb|EFU18774.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315576264|gb|EFU88455.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315578904|gb|EFU91095.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315582755|gb|EFU94946.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|329573313|gb|EGG54926.1| response regulator protein VraR [Enterococcus faecalis TX1467]
          Length = 206

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T     I   +   +   R++  +   ++         + K  +    +
Sbjct: 90  IEAGAAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKM------MERLTKKQEPVLHE 143

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  I++GK++ EIA  L I+  TV  ++++I+ K     R+ A  YA +
Sbjct: 144 D--LTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQ 201

Query: 243 NNI 245
           + +
Sbjct: 202 HGL 204


>gi|197337087|ref|YP_002158591.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11]
 gi|197314339|gb|ACH63788.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11]
          Length = 252

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 17/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++            +  +T+ V   ++LL         K D  +  ++P    +   
Sbjct: 14  IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140
            +   KY  ++        P+   + EN        N              S     A  
Sbjct: 74  DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 133

Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
             G++      +    D L       I L+     + ++  ++   K + +LT RE ECL
Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W  EGK+S +I+ ILG S  TV  ++ +   K  T  R  +I+ A+    +
Sbjct: 194 AWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 245


>gi|462556|sp|P12746|LUXR_VIBFI RecName: Full=Transcriptional activator protein luxR
 gi|5726578|gb|AAD48473.1|AF170104_1 regulatory protein LuxR [Aliivibrio fischeri]
 gi|155231|gb|AAA27540.1| luxR protein [Aliivibrio fischeri]
 gi|59800242|gb|AAX07424.1| LuxR [Expression vector pLuxR-wt]
 gi|59800247|gb|AAX07428.1| LuxR-mut [Expression vector pHTSUB-105]
 gi|60594754|gb|AAX29978.1| LuxR [Cloning vector pHTSUB-106]
          Length = 250

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 17/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++            +  +T+ V   ++LL         K D  +  ++P    +   
Sbjct: 12  IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 71

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140
            +   KY  ++        P+   + EN        N              S     A  
Sbjct: 72  DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 131

Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
             G++      +    D L       I L+     + ++  ++   K + +LT RE ECL
Sbjct: 132 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 191

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W  EGK+S +I+ ILG S  TV  ++ +   K  T  R  +I+ A+    +
Sbjct: 192 AWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243


>gi|291300839|ref|YP_003512117.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570059|gb|ADD43024.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLT 134
            IV  D    ++  +  +        ++ P ++       L + +        + +    
Sbjct: 52  DIVVMDVRMPVLDGIEATR-QLAGAGVEDPVKVLVVTTFNLDKYVYEALRAGASGFLLKD 110

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              A++  G+  +     ++  D   +  L+  Y A +  + D     D  LT RE+E L
Sbjct: 111 APPAQLLHGIRTVASGAALLDPDVTRQ--LVGRYAARIRPAEDTP--DDTALTPRELEVL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             I+ G ++ EIA  L IS  TV  Y++ I+ K   + R  A+ YA R  +
Sbjct: 167 RHIANGLSNSEIAATLVISHETVKTYVSRILTKLGLRDRVQAVVYAYRRGL 217


>gi|15887874|ref|NP_353555.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15155462|gb|AAK86340.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 251

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 32/243 (13%)

Query: 22  FVSHLPTRSDLLARMIPL---------------DCTVSWTMRMYALTEYVG--ASHFLLV 64
               + +RSDL  +++ +                       +M    E  G  A+     
Sbjct: 22  RSPVVTSRSDLFPKLVAMQKLVGARNFVVTKAAASGFPNKKKMTCELENWGMNAAEQSAQ 81

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 +  LD I +S  P              + ++   P      +   +  +  P A
Sbjct: 82  FIRAVGDILLDHIETSLLPVIWRNK----NAGGFADLPDVPA-----LLRRIENDTLPYA 132

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKD 183
           G      +L   +  I  G ++      I+  + + E  +       +M    +      
Sbjct: 133 G-----LALPVRLGTIGNGYIVFCGTNLILDNEVVIEQHIKCCEIMVDMLALDERKVAPS 187

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+ CL    +G+ S+EIAV LG+S +TVN Y+ S   K  +  R  AIA A+R 
Sbjct: 188 EALSEREIACLQLAGDGRISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRL 247

Query: 244 NIV 246
             +
Sbjct: 248 GYI 250


>gi|332875591|ref|ZP_08443403.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6014059]
 gi|332736164|gb|EGJ67179.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6014059]
          Length = 238

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 87/237 (36%), Gaps = 24/237 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            DLL+  + +         + +    +G  +  + +       E K  +I+ +++P    
Sbjct: 6   EDLLSAFLVVKNEYQLFDIVKSTASRLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITPPAGMDNRYCSLTFDVARIR 141
           +     +  K    +Q       P+        T  E                   +R  
Sbjct: 64  KRYVEGQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDF 123

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-----------YDVHWGK-DFELTGR 189
           IG   +    R    D+L E    A Y    + +            DV + K +  LT R
Sbjct: 124 IGTRGMLTLAR--SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNR 181

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  A   AV   ++
Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|206562110|ref|YP_002232873.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
 gi|198038150|emb|CAR54100.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
          Length = 262

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 16/171 (9%)

Query: 83  PFDLVRCMALSEKDKY----YNVLQRPTELFCPVF--HTLPENITPPAGMDNRYCSLTFD 136
           P D V  MA +    Y       L R  +          L   ++ P    N    L   
Sbjct: 99  PVDPVHRMAFARATPYRWADIRGLNRIEQRVLGEARDAGLTSGVSIPLRETNGDILL--- 155

Query: 137 VARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                + L    P+ +  +  RL   IG L   + +             EL+ R+ ECL 
Sbjct: 156 -----VNLASPSPEIKTEVHMRLASSIGALFHQELHRLMKPH-RPEPALELSPRQQECLA 209

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W++ GK+S  IA I+GIS +TV+ +IA  M+     +R+ A  +AV   ++
Sbjct: 210 WVARGKSSWAIASIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 260


>gi|167615994|ref|ZP_02384629.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
          Length = 194

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 14/183 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDN 128
           ++ S++P         +      + ++       PV  +   N +  A        G+ +
Sbjct: 13  LMVSNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSASTNASKSAFWAEALSFGIAH 72

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----D 183
            + S +   A   IG++ L  +   I     +    +  + AN+  +    +       D
Sbjct: 73  GWSSASR-GADGTIGVLSLSRRQDAIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFD 131

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A   
Sbjct: 132 PDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALM 191

Query: 244 NIV 246
            ++
Sbjct: 192 GML 194


>gi|29377375|ref|NP_816529.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           V583]
 gi|227554359|ref|ZP_03984406.1| LuxR family response regulator [Enterococcus faecalis HH22]
 gi|255970859|ref|ZP_05421445.1| regulatory protein [Enterococcus faecalis T1]
 gi|255974434|ref|ZP_05425020.1| regulatory protein [Enterococcus faecalis T2]
 gi|256618304|ref|ZP_05475150.1| regulatory protein [Enterococcus faecalis ATCC 4200]
 gi|256761234|ref|ZP_05501814.1| regulatory protein [Enterococcus faecalis T3]
 gi|256958147|ref|ZP_05562318.1| regulatory protein [Enterococcus faecalis DS5]
 gi|256960293|ref|ZP_05564464.1| regulatory protein [Enterococcus faecalis Merz96]
 gi|256962729|ref|ZP_05566900.1| regulatory protein [Enterococcus faecalis HIP11704]
 gi|257077420|ref|ZP_05571781.1| regulatory protein [Enterococcus faecalis JH1]
 gi|257080715|ref|ZP_05575076.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           E1Sol]
 gi|257083389|ref|ZP_05577750.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           Fly1]
 gi|257088053|ref|ZP_05582414.1| regulatory protein [Enterococcus faecalis D6]
 gi|257091132|ref|ZP_05585493.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           CH188]
 gi|257417079|ref|ZP_05594073.1| regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257417793|ref|ZP_05594787.1| luxR family DNA-binding response regulator [Enterococcus faecalis
           T11]
 gi|257420589|ref|ZP_05597579.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|294779660|ref|ZP_06745051.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300861047|ref|ZP_07107134.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|29344842|gb|AAO82599.1| DNA-binding response regulator, LuxR family [Enterococcus faecalis
           V583]
 gi|227176505|gb|EEI57477.1| LuxR family response regulator [Enterococcus faecalis HH22]
 gi|255961877|gb|EET94353.1| regulatory protein [Enterococcus faecalis T1]
 gi|255967306|gb|EET97928.1| regulatory protein [Enterococcus faecalis T2]
 gi|256597831|gb|EEU17007.1| regulatory protein [Enterococcus faecalis ATCC 4200]
 gi|256682485|gb|EEU22180.1| regulatory protein [Enterococcus faecalis T3]
 gi|256948643|gb|EEU65275.1| regulatory protein [Enterococcus faecalis DS5]
 gi|256950789|gb|EEU67421.1| regulatory protein [Enterococcus faecalis Merz96]
 gi|256953225|gb|EEU69857.1| regulatory protein [Enterococcus faecalis HIP11704]
 gi|256985450|gb|EEU72752.1| regulatory protein [Enterococcus faecalis JH1]
 gi|256988745|gb|EEU76047.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           E1Sol]
 gi|256991419|gb|EEU78721.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           Fly1]
 gi|256996083|gb|EEU83385.1| regulatory protein [Enterococcus faecalis D6]
 gi|256999944|gb|EEU86464.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           CH188]
 gi|257158907|gb|EEU88867.1| regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257159621|gb|EEU89581.1| luxR family DNA-binding response regulator [Enterococcus faecalis
           T11]
 gi|257162413|gb|EEU92373.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|294453317|gb|EFG21728.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850086|gb|EFK77836.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|323478876|gb|ADX78315.1| response regulator [Enterococcus faecalis 62]
 gi|327536064|gb|AEA94898.1| DNA-binding response regulator [Enterococcus faecalis OG1RF]
          Length = 210

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T     I   +   +   R++  +   ++         + K  +    +
Sbjct: 94  IEAGAAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKM------MERLTKKQEPVLHE 147

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L  I++GK++ EIA  L I+  TV  ++++I+ K     R+ A  YA +
Sbjct: 148 D--LTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQ 205

Query: 243 NNI 245
           + +
Sbjct: 206 HGL 208


>gi|262281348|ref|ZP_06059129.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257174|gb|EEY75911.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus
           RUH2202]
          Length = 238

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 16/186 (8%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRYCSLTF 135
           I+ +++P    +     +       +Q       P V+ +   N            S   
Sbjct: 53  IMLNNYPEAWQKRYVKQQYVVVDPTVQHCMLSLQPLVWSSQSANTQSQKDFWEEARSYGL 112

Query: 136 DVARIRIGLMLLFPKGRIILR---DRLWEIGLLAAYQANMFKSYDVHWGK---------- 182
           +V   +     +  +G + L    D+L E    A Y    + S  VH             
Sbjct: 113 NVGWAQSSRDFIGTRGMLTLARSTDQLSEKEQKAQYTNMYWLSQTVHSSIAKIVNDAEFA 172

Query: 183 --DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  LT RE E L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   A
Sbjct: 173 QFNLYLTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRA 232

Query: 241 VRNNIV 246
           V   I+
Sbjct: 233 VMLGIL 238


>gi|295401191|ref|ZP_06811164.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109465|ref|YP_003987781.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294976784|gb|EFG52389.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214566|gb|ADP73170.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 226

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    T     D    +L   V  +  G   L PK   I  + + E   L+A +  
Sbjct: 91  VMRALQMGATGYLLKDMDADTLIEAVKIVAEGGSYLHPK---ITHNLIREYRRLSAGKNE 147

Query: 172 MFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                         L T RE E L  +++GK++  I   L IS  TV N++++I++K   
Sbjct: 148 KEGEGKREARWPLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNV 207

Query: 231 KTRSGAIAYAVRNN 244
             R+ A+  A++N 
Sbjct: 208 NDRTQAVIVAIKNG 221


>gi|229592722|ref|YP_002874841.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229364588|emb|CAY52478.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 236

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 16/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R+  L ++   +   S    +   T  +G  +          E + + I  +++P +   
Sbjct: 5   RNTRLPKLEGENEITSVFEMVINQTYELGFQYCSFKMSSQVSENQTNPIEFTNYPKEWTT 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMD-NRYCSLTFDVARIR 141
               +       V++       PV      F   P   +    ++ N   +      +  
Sbjct: 65  VYNQARYFDVDPVVKHCKRCVLPVVWEGTLFKDAPSLWSLAQTLNVNVAWTQAVHDFQGV 124

Query: 142 IGLMLLFPKGRIILRDRLWEIG--------LLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             ++ L      +    L+E           + A  A  +           +LT RE E 
Sbjct: 125 FSMLTLSRGTDDVSPVELYEKAGHVLWLCHAMHAVVAQKYAGKPSAL-PPSKLTPRETEI 183

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L W + GKT+ +IA IL +S  TV  +I+S  +K     +  A+  A +  +
Sbjct: 184 LKWSAMGKTASDIATILCLSERTVGFHISSTFKKLGVNNKIAAVLCASKAGL 235


>gi|328881294|emb|CCA54533.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 225

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y A++    +        LT 
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYSAHLPTGEEQVPDTLSTLTD 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|192360065|ref|YP_001981449.1| two-component transcriptional regulator, LuxR family [Cellvibrio
           japonicus Ueda107]
 gi|190686230|gb|ACE83908.1| two-component transcriptional regulator, LuxR family [Cellvibrio
           japonicus Ueda107]
          Length = 312

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL  +Q    +       + F +TGRE + L WI+ GKT+ EI  IL +S  TVN ++  
Sbjct: 229 LLRLHQRAQPEDETQSLRQQFAVTGREADVLRWIANGKTNREIGQILDMSPRTVNKHLEQ 288

Query: 224 IMRKTATKTRSGAIAYAVR 242
           I +K   + R+ A A A++
Sbjct: 289 IFKKLGVENRTSAAAAAIK 307


>gi|149182159|ref|ZP_01860641.1| YhcZ [Bacillus sp. SG-1]
 gi|148850110|gb|EDL64278.1| YhcZ [Bacillus sp. SG-1]
          Length = 213

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 13/170 (7%)

Query: 82  WPFDLVRCMALSEKDKY------YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            P  ++  + + E D         N       +    F      I         Y     
Sbjct: 48  QPHLILMDLVMPEMDGIQATKLIKNQHPNIEIMMLTSFSDQDHVIPAIEAGAAGYQLKDI 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  L      +             +        +    +  +LT RE + L 
Sbjct: 108 EPDELVDSIRKLVRGENSLHPKA-------TNHLLKRVSRKNQPPHQIHQLTNRERDVLK 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +++GK++ EIA  L I+  TV  +I++I  K     R+ A  YAV++ +
Sbjct: 161 ELAKGKSNKEIAASLYITEKTVKTHISNIFAKLEVSDRTQAALYAVKHGL 210


>gi|329939099|ref|ZP_08288473.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329301984|gb|EGG45877.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 223

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLHTLTD 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|228907170|ref|ZP_04071032.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL
           200]
 gi|228852502|gb|EEM97294.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL
           200]
          Length = 199

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 37  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSK 96

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +     D  LT RE E L  
Sbjct: 97  ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 148

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 149 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 197


>gi|310643909|ref|YP_003948667.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309248859|gb|ADO58426.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 216

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +A+   N F+          ELT RE+E L  +++GK++ +IA  L I   TV  ++ 
Sbjct: 132 SQVASKMMNRFRQPQAEAPAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVT 191

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           +++ K   + R+ A  YA +N +
Sbjct: 192 NLLAKLGVEDRTQAAIYAYKNGL 214


>gi|305673633|ref|YP_003865305.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305411877|gb|ADM36996.1| two-component response regulator (paired with YhcY) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 215

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 12/176 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNR 129
            ++    P  ++  +++ E D     +++  + F  +       ++  E++ P      +
Sbjct: 40  RVIEETKPDLVLMDLSMPEMDG-IQAIKKAVQQFSGINIIVLTSYSDQEHVIPALQAGAK 98

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
              L        +  +     G+  L   +     +     +M   +D    K ++LT R
Sbjct: 99  AYQLKDTEPEELVKTLRQVHDGQYKLSSAI-----MPHVLTHMRNQHDPEKEKIYQLTRR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + L  I+ GK++ EIA  L IS  TV  ++++++ K     R+ A  +AV+ N+
Sbjct: 154 EKDVLNEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209


>gi|290961675|ref|YP_003492857.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260651201|emb|CBG74322.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 223

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPANELVQAIRVVAGGEAMLAPSITRR-LLDKYAEHLPSGDEQVPDTLHTLTD 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|302533688|ref|ZP_07286030.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442583|gb|EFL14399.1| two-component system response regulator [Streptomyces sp. C]
          Length = 219

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 8/153 (5%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           E  +    L+ P  +      T    + P        Y     D   +   +  +     
Sbjct: 72  EALRRLRDLENPARVLIVTSFTEQRTVVPALRAGAAGYLYKDIDPDALAGAIRSVHAGHV 131

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++  +      LLAA             G+   LT RE E L  I++G+++ EIA  L +
Sbjct: 132 LLQPE--VAEALLAAQDDQSGPG-----GRPGSLTDREREVLGLIADGRSNREIARTLVL 184

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 185 SEKTVKTHVSNILMKLDLSDRTQAALWAVRHGI 217


>gi|325289912|ref|YP_004266093.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965313|gb|ADY56092.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 212

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L   +      D    +L   + ++  G  +L P     L  ++            
Sbjct: 90  VFQVLQTGVAGYLLKDVFPKTLVNSIRKVYSGEPILAPSVTGKLLGQI------------ 137

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S        F L+ RE+E L  ++ G ++ EI + L IS  TV N++++I RK   +
Sbjct: 138 ---STPSKNKNSFGLSKREMEILRAVARGSSNKEIGISLYISEKTVKNHLSNIFRKLEVE 194

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   AV+ N+V
Sbjct: 195 DRTQAAIKAVKLNLV 209


>gi|304317230|ref|YP_003852375.1| LuxR family transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778732|gb|ADL69291.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 210

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 14/169 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            I+  D     +  +  ++  K  N   +   +F  +++     +         Y     
Sbjct: 49  DIILMDINMPNINGIKAAKMLKNDNPKNKI--MFLTIYNDKEYLMEALKIGVEGYILKDA 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +   G  I    + EI  L   +               ELT RE++ L+
Sbjct: 107 DSDELIKAIRTISNGGVYIHPSLVSEIENLDTDECKK------------ELTDREMQILS 154

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            I+EG ++ EIA  L +S  TV N++ +I RK   K R+ A  Y ++NN
Sbjct: 155 LIAEGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIYLLKNN 203


>gi|170736657|ref|YP_001777917.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818845|gb|ACA93427.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 321

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 16/171 (9%)

Query: 83  PFDLVRCMALSEKDKY----YNVLQRPTELFCPVF--HTLPENITPPAGMDNRYCSLTFD 136
           P D V  MA +    Y       L R  +          L   ++ P    N    L   
Sbjct: 158 PVDPVHRMAFARATPYRWADIRGLNRIEQRVLGEARDAGLTSGVSIPLREANGDILL--- 214

Query: 137 VARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                + L    P+ +  +  RL   IG L   + +             EL+ R+ ECL 
Sbjct: 215 -----VNLASPSPEIKTEVHMRLASLIGALFHQELHRLMKPH-RPEPALELSPRQQECLA 268

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W++ GK+S  IA I+GIS +TV+ +IA  M+     +R+ A  +AV   ++
Sbjct: 269 WVARGKSSWAIAAIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 319


>gi|302534781|ref|ZP_07287123.1| two-component system response regulator [Streptomyces sp. C]
 gi|302443676|gb|EFL15492.1| two-component system response regulator [Streptomyces sp. C]
          Length = 270

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 152 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 209

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 210 RELEVLKLVATGMNNRDIAKQLFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 267


>gi|297200099|ref|ZP_06917496.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297147573|gb|EDY61231.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 269

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 151 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 208

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 209 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 266


>gi|297198515|ref|ZP_06915912.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197716175|gb|EDY60209.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLHTLTD 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|315030865|gb|EFT42797.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
          Length = 206

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   T     I   +   +   R++  +   ++         + K  +    +D  L
Sbjct: 94  AAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKM------MERLTKKQEPVLHED--L 145

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  I++GK++ EIA  L I+  TV  ++++I+ K     R+ A  YA ++ +
Sbjct: 146 TNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 204


>gi|312863730|ref|ZP_07723968.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
 gi|311101266|gb|EFQ59471.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
          Length = 214

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-PAGMDNRYCSLTFD 136
           P  +V  + + E D     L+   E     +     +   E I P        Y   T  
Sbjct: 51  PDVVVMDLVMPELDGVQATLELLKEWPEAKILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   +  ++     I  +             N  K +D H     +LT RE + L  
Sbjct: 111 ATEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDDLTARERDILAL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 160 LAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209


>gi|225868023|ref|YP_002743971.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701299|emb|CAW98303.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 213

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    L   +    +L +  E    V  +  +N      +D             +  
Sbjct: 55  MDLVMP-ELGGVEATLEILSKWKEARVLVLTSYLDNEKIYPVIDAGA----------KGY 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++       I+   R    G LA         K++D       ELT RE + L  +++G 
Sbjct: 104 MLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPDLHEELTAREYDILHLLAKGY 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 164 DNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFRHHLV 208


>gi|229547584|ref|ZP_04436309.1| LuxR family response regulator [Enterococcus faecalis TX1322]
 gi|256852497|ref|ZP_05557873.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           T8]
 gi|229307274|gb|EEN73261.1| LuxR family response regulator [Enterococcus faecalis TX1322]
 gi|256712351|gb|EEU27383.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           T8]
          Length = 210

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   T     I   +   +   R++  +   ++         + K  +    +D  L
Sbjct: 98  AAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKM------MERLTKKQEPVLHED--L 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  I++GK++ EIA  L I+  TV  ++++I+ K     R+ A  YA ++ +
Sbjct: 150 TNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 208


>gi|237808386|ref|YP_002892826.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
 gi|237500647|gb|ACQ93240.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
          Length = 298

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 42/82 (51%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           ++  L        +  +    ++  LT RE + L W+S GKT+ EIA IL +S  TVN +
Sbjct: 214 QLHALIRLVTPKKRGTEEDLQRELNLTKRESQVLYWLSFGKTNWEIATILEMSPRTVNKH 273

Query: 221 IASIMRKTATKTRSGAIAYAVR 242
           +  I +K     R+ A + ++R
Sbjct: 274 LEQIYKKLNVDNRTAAASISLR 295


>gi|302550305|ref|ZP_07302647.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467923|gb|EFL31016.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D           + E   A   L V  +     +    V +  P  ++  + 
Sbjct: 1   MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57

Query: 92  LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   D               P ++       L E +            L    A   +  
Sbjct: 58  MPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQA 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L   +    LL  Y  ++    +        LT REVE L  ++ G ++ 
Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLDTLTDREVEVLKLVARGLSNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|289578700|ref|YP_003477327.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus
           Ab9]
 gi|297544934|ref|YP_003677236.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528413|gb|ADD02765.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter italicus Ab9]
 gi|296842709|gb|ADH61225.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 205

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 39/68 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE+E L  IS+G ++ EIA  L +S  TV N++ +I +K   K R+ A  
Sbjct: 135 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 194

Query: 239 YAVRNNIV 246
           Y ++N  +
Sbjct: 195 YMLKNETI 202


>gi|294499258|ref|YP_003562958.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349195|gb|ADE69524.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 212

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 49/100 (49%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L+    +++  +      +       + KS +        LT RE + L  I++GK++ E
Sbjct: 112 LVAAIRKLMNGENQLHPKVTTHLLTRLTKSSEKKVNFIDHLTKREKDVLKEIAKGKSNKE 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I V L I+  TV  ++++I+ K   + R+ A  YAV++ I
Sbjct: 172 IGVALHITEKTVKTHVSNILSKLGVQDRTQAALYAVQHGI 211


>gi|291453746|ref|ZP_06593136.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356695|gb|EFE83597.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 267

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 149 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 206

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 207 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 264


>gi|229084537|ref|ZP_04216810.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44]
 gi|228698773|gb|EEL51485.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44]
          Length = 196

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 14/180 (7%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAG 125
           +K   +     P  ++  + + E D        + + P      V  F    +       
Sbjct: 23  RKGSELALELRPDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEA 82

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T   + I   +   +    ++      E  +     + M +  +    +D  
Sbjct: 83  GATSYLLKTSRASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLYED-- 134

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 135 LTEREFEILMLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 194


>gi|159900171|ref|YP_001546418.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893210|gb|ABX06290.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 221

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 11/177 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-R 129
           +Q L  +V  D    ++  +   E  +    +   T++      +  E + P        
Sbjct: 46  KQLLPDVVIMD---LVMPEIDGVEATRRVKAVSPTTQVIVLTSFSDDEKVFPAIKAGAIS 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +   +        ++  +      L+  + A      D        LT R
Sbjct: 103 YLLKDVSPLELARAVRSAKRGEAVLHPE--VAAKLMQEFSAPRNNDPDAEA-----LTER 155

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ L  I+ G ++ EIA  L IS  TV  ++++I+ K     R+ A  YA+R  +V
Sbjct: 156 EMDVLRLIARGHSNREIADSLIISEKTVKTHVSNILSKLHLADRTQAAIYALRQRLV 212


>gi|295704610|ref|YP_003597685.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802269|gb|ADF39335.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 212

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 48/100 (48%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L+    +++  +      +       + KS +        LT RE + L  I++GK++ E
Sbjct: 112 LVAAIRKLMNGENQLHPKVTTHLLTRLTKSSEKKVNFIDHLTKREKDVLKEIAKGKSNKE 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I   L I+  TV  ++++I+ K   + R+ A  YAV++ I
Sbjct: 172 IGAALHITEKTVKTHVSNILSKLGVQDRTQAALYAVQHGI 211


>gi|326334186|ref|ZP_08200409.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae
           bacterium Broad-1]
 gi|325947977|gb|EGD40094.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae
           bacterium Broad-1]
          Length = 212

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y      + ++   + ++     +I         L+  ++       D     
Sbjct: 90  IKAGAMGYLLKDSSIDQVAQAIRVVADGQSLISPS--MAAKLMEEFK--QMARPDRSPVP 145

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE+E L  +++G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR
Sbjct: 146 GPKLTDRELEVLGLVAKGLNNREIAKRLFISENTVKNHVRNILEKLQAHSRMEAVMYAVR 205

Query: 243 NNIV 246
             ++
Sbjct: 206 QKLL 209


>gi|327200684|pdb|3QP5|A Chain A, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200685|pdb|3QP5|B Chain B, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200686|pdb|3QP5|C Chain C, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200687|pdb|3QP5|D Chain D, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|288973234|gb|ADC79709.1| CviR transcriptional regulator [Chromobacterium violaceum]
          Length = 265

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 16/188 (8%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF---------HTLPENI 120
           Q Q+L+ +++  +P D +    + E    ++ + R      PV              +  
Sbjct: 68  QIQRLERVLNVSYPSDWLDQY-MKENYAQHDPILRIHLGQGPVMWEERFNRAKGAEEKRF 126

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLF------PKGRIILRDRLWEIGLLAAYQANMFK 174
              A  +     +TF  A  R  +  +       P     L   L  +       A    
Sbjct: 127 IAEATQNGMGSGITFSAASERNNIGSILSIAGREPGRNAALVAMLNCLTPHLHQAAIRVA 186

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +       +  L+ RE +   W+S GKT+ EIA IL IS  TV  ++A+++RK     R+
Sbjct: 187 NLPPASPSNMPLSQREYDIFHWMSRGKTNWEIATILDISERTVKFHVANVIRKLNANNRT 246

Query: 235 GAIAYAVR 242
            AI   + 
Sbjct: 247 HAIVLGMH 254


>gi|239820479|ref|YP_002947664.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
 gi|239805332|gb|ACS22398.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 235

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 18/231 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           D+L R+           ++      +G  H  + L     F   +  +++ S +     R
Sbjct: 7   DVLGRLDEASEPSQVLAQVSVAARQLGFEHCAYGLRTLVPF--TRPKTLMFSTYDERWSR 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPA--GMDNRYCSLTFDVARI 140
               +   +    +        PV      F   P+        G+   +    F+    
Sbjct: 65  RYISAGYLQVDPTVAHGVHSGTPVIWSNEVFRDAPQMWDEARSFGLRVGWAQSVFEPD-A 123

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-----DVHWGKDFELTGREVECLT 195
           R+G++ L      +    +    LL     N                   LT R+VE L 
Sbjct: 124 RVGMLSLARSSEPLTAAEMRAKDLLFQGLVNKAHRAFCRLLGGPLAGIEPLTKRQVEVLR 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W  +GKTSDEIA IL IS+ TV+ ++ + M +    T+S A A+A R  ++
Sbjct: 184 WTGDGKTSDEIAAILCISKPTVDFHLRNAMARLGASTKSSAAAFASRLGLL 234


>gi|154685393|ref|YP_001420554.1| YhcZ [Bacillus amyloliquefaciens FZB42]
 gi|154351244|gb|ABS73323.1| YhcZ [Bacillus amyloliquefaciens FZB42]
          Length = 214

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 45/94 (47%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R +   R      +  +        D    K  +LT RE + L  I++GK++ EIA  L 
Sbjct: 115 REVYSGRYRLSADIVPHVLTHMVQDDQDKEKYDQLTPREKDVLQEIAKGKSNKEIAAALF 174

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IS  TV  ++++++ K     R+ A  YAV+ N+
Sbjct: 175 ISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNV 208


>gi|311696551|gb|ADP99424.1| two-component response regulator [marine bacterium HP15]
          Length = 279

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S      + FELT RE + L WI+ GKT+ EI  IL +S  TVN ++  + RK   + R
Sbjct: 206 NSATAALRQRFELTLRESDVLLWIANGKTNREIGQILDMSPRTVNKHLEQVFRKLGVENR 265

Query: 234 SGAIAYAVR 242
           + A A A+R
Sbjct: 266 TAAAASAIR 274


>gi|302551827|ref|ZP_07304169.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469445|gb|EFL32538.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 270

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 152 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 209

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 210 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 267


>gi|217978159|ref|YP_002362306.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217503535|gb|ACK50944.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 306

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           G+  +   L F   RI    +        +   RL E    A   A   K          
Sbjct: 192 GLGPKCAVLQFGSRRIECQFLSRTGPDEFLY--RLKEADSEAGDGAQRLKEA-------M 242

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE E L W++ GK++ +I+ IL IS  TVN ++  I RK   + R+ A   AV+ 
Sbjct: 243 TLTSREAEVLVWLAAGKSNRDISAILSISPRTVNKHLEQIFRKLGVENRAAAAVMAVQT 301


>gi|292670350|ref|ZP_06603776.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541]
 gi|292648081|gb|EFF66053.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541]
          Length = 223

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     L   +  +  G   ++PK    L +RL+    +    + 
Sbjct: 91  VLELLKNGALGYLLKDVEPSVLIKAIHMVNEGNPFVYPK----LAERLFGSTAVYGDVSR 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M K       +   LT RE++ L  I++G ++ +I   LG+S  TV N++ SI  K    
Sbjct: 147 MAKEI-WDESRGERLTPREMDVLGCIAKGFSNQDIGKALGLSEKTVKNHLTSIFHKLKVN 205

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+ Y ++N IV
Sbjct: 206 DRTQALVYVLKNKIV 220


>gi|228900120|ref|ZP_04064353.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL
           4222]
 gi|228859526|gb|EEN03953.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL
           4222]
          Length = 199

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 37  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 96

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 97  ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 148

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 149 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 197


>gi|320160955|ref|YP_004174179.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994808|dbj|BAJ63579.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 217

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 6/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC- 131
            +++++ P  ++  + +   D       + +   E+   +  T  ++     G+      
Sbjct: 42  RLIANNHPHVVLMDLRMPVLDGVRATGRIRELFPEVRVIILTTFDDDDLVFDGLRAGAIG 101

Query: 132 -SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L    +      +    +G   L+  +    ++A +  +   S          L+ RE
Sbjct: 102 YLLKDVSSDNLFEAVRAAYRGEYFLQPSIT-AKVVAEFARSPRPSSAKMAELTEPLSPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  ++EGK++ EIA  L IS  TV N+++SI+ K   K R  A+  A    I+
Sbjct: 161 IEVLFLVAEGKSNREIAEQLVISEGTVKNHLSSILSKLGAKDRLQAVIRAREAGIL 216


>gi|69248021|ref|ZP_00604584.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|227550521|ref|ZP_03980570.1| LuxR family response regulator [Enterococcus faecium TX1330]
 gi|257880197|ref|ZP_05659850.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257882998|ref|ZP_05662651.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|257888548|ref|ZP_05668201.1| regulatory protein [Enterococcus faecium 1,141,733]
 gi|257891419|ref|ZP_05671072.1| regulatory protein [Enterococcus faecium 1,231,410]
 gi|257897077|ref|ZP_05676730.1| regulatory protein [Enterococcus faecium Com12]
 gi|258614385|ref|ZP_05712155.1| LuxR family DNA-binding response regulator [Enterococcus faecium
           DO]
 gi|293377300|ref|ZP_06623504.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293572485|ref|ZP_06683464.1| transcriptional regulatory protein DegU [Enterococcus faecium E980]
 gi|294622136|ref|ZP_06701212.1| transcriptional regulatory protein DegU [Enterococcus faecium
           U0317]
 gi|68194589|gb|EAN09079.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|227180422|gb|EEI61394.1| LuxR family response regulator [Enterococcus faecium TX1330]
 gi|257814425|gb|EEV43183.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257818656|gb|EEV45984.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|257824602|gb|EEV51534.1| regulatory protein [Enterococcus faecium 1,141,733]
 gi|257827779|gb|EEV54405.1| regulatory protein [Enterococcus faecium 1,231,410]
 gi|257833642|gb|EEV60063.1| regulatory protein [Enterococcus faecium Com12]
 gi|291598337|gb|EFF29424.1| transcriptional regulatory protein DegU [Enterococcus faecium
           U0317]
 gi|291607402|gb|EFF36745.1| transcriptional regulatory protein DegU [Enterococcus faecium E980]
 gi|292643992|gb|EFF62098.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 210

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T     I   +       R++  +      +       M +  +    +
Sbjct: 94  IEAGAAGYLLKTSTAHEIADAIRATQRGERVLEPE------VTTKMMEKMSRRNEPVLHE 147

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +
Sbjct: 148 --ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205

Query: 243 NNIV 246
           + +V
Sbjct: 206 HGLV 209


>gi|228932822|ref|ZP_04095692.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945136|ref|ZP_04107496.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229010843|ref|ZP_04168040.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048]
 gi|229016795|ref|ZP_04173725.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273]
 gi|229023000|ref|ZP_04179517.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272]
 gi|229058174|ref|ZP_04196563.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603]
 gi|229090494|ref|ZP_04221732.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42]
 gi|229096030|ref|ZP_04227005.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29]
 gi|229102142|ref|ZP_04232853.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28]
 gi|229114984|ref|ZP_04244396.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3]
 gi|229132346|ref|ZP_04261200.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196]
 gi|229160490|ref|ZP_04288485.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803]
 gi|229166381|ref|ZP_04294138.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621]
 gi|228617123|gb|EEK74191.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621]
 gi|228622900|gb|EEK79731.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803]
 gi|228651052|gb|EEL07033.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196]
 gi|228668496|gb|EEL23926.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3]
 gi|228681342|gb|EEL35508.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28]
 gi|228687415|gb|EEL41318.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29]
 gi|228692844|gb|EEL46565.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42]
 gi|228720139|gb|EEL71721.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603]
 gi|228738306|gb|EEL88785.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272]
 gi|228744531|gb|EEL94603.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273]
 gi|228750517|gb|EEM00346.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048]
 gi|228814580|gb|EEM60841.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826872|gb|EEM72636.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 196

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 34  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 93

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 94  ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 145

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 146 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 194


>gi|254504710|ref|ZP_05116861.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222440781|gb|EEE47460.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 248

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 6/144 (4%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           + +L R       +F              +     +F +       + L+P GR+   + 
Sbjct: 106 HTLLARTGAADATLFQLGRALGEWLESGADTPKRGSFMLGLSEELAVQLYPLGRVGPDEN 165

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L+ +   A  +    ++  V    +F+LT RE E L WI++GK++ +I  IL +S  TVN
Sbjct: 166 LFRV--TAEDEEGQVRALQV----EFQLTQREAEVLIWIAKGKSNKDIGEILNLSPRTVN 219

Query: 219 NYIASIMRKTATKTRSGAIAYAVR 242
            ++  I  K   + R+ A   A  
Sbjct: 220 KHLEQIFVKLGVENRASAAVRAAE 243


>gi|169797684|ref|YP_001715477.1| autoinducer-binding transcriptional regulator [Acinetobacter
           baumannii AYE]
 gi|213155522|ref|YP_002317567.1| eR transcriptional regulator [Acinetobacter baumannii AB0057]
 gi|215485038|ref|YP_002327279.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB307-0294]
 gi|239503083|ref|ZP_04662393.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB900]
 gi|301348492|ref|ZP_07229233.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB056]
 gi|301513441|ref|ZP_07238678.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB058]
 gi|301597204|ref|ZP_07242212.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB059]
 gi|332853574|ref|ZP_08434826.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013150]
 gi|332869309|ref|ZP_08438707.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013113]
 gi|169150611|emb|CAM88520.1| putative Autoinducer-binding transcriptional regulator (LuxR
           family) [Acinetobacter baumannii AYE]
 gi|193076010|gb|ABO10598.2| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978]
 gi|213054682|gb|ACJ39584.1| eR transcriptional regulator [Acinetobacter baumannii AB0057]
 gi|213987791|gb|ACJ58090.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB307-0294]
 gi|323516195|gb|ADX90576.1| autoinducer-binding transcriptional regulator [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332728538|gb|EGJ59911.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013150]
 gi|332732817|gb|EGJ64032.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013113]
          Length = 238

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 87/237 (36%), Gaps = 24/237 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            DLL+  + +         + +    +G  +  + +       E K  +I+ +++P    
Sbjct: 6   EDLLSAFLVVKNEYQLFEIVKSTASRLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITPPAGMDNRYCSLTFDVARIR 141
           +     +  K    +Q       P+        T  E                   +R  
Sbjct: 64  KRYVERQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDF 123

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-----------YDVHWGK-DFELTGR 189
           IG   +    R    D+L E    A Y    + +            DV + K +  LT R
Sbjct: 124 IGTRGMLTLAR--SNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNR 181

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  A   AV   ++
Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|295396928|ref|ZP_06807052.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
 gi|294974862|gb|EFG50565.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
          Length = 210

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 78/204 (38%), Gaps = 20/204 (9%)

Query: 55  YVGASHFLLVRWDL--FQEQKL----DSIVSSDWPFDLVRCMALSEKDKYYNVLQ----R 104
            +G S +L  + DL    E K       +  S  P  ++  + +   D      +     
Sbjct: 14  RLGVSTYLSTQSDLEIVGEAKDGLEGKKMALSLQPDIILMDLVMDNMDGIQATQEILADW 73

Query: 105 PTELFCPVFHTLPENITPPA--GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           P      V   + +    PA       Y   T     I   +   +    +I    + E 
Sbjct: 74  PKANILIVTSFIDDEKVYPAMQAGAKGYILKTSSANEIASAIRRTYAGESVIAP-TVNEK 132

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +    +AN    +D       +LT RE E L  I+ GK++ EIA  L I+  TV  +++
Sbjct: 133 LIAHEVEANRHHLHD-------DLTTREREVLQLIAAGKSNQEIADELFITLKTVKTHVS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I+ K   + R+ A  YA +N +V
Sbjct: 186 NILSKLGVEDRTQATIYAFQNQLV 209


>gi|229029217|ref|ZP_04185310.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271]
 gi|228732125|gb|EEL83014.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271]
          Length = 204

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 42  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 101

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +D  LT RE E L  
Sbjct: 102 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHED--LTERESEILLL 153

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 154 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202


>gi|253573655|ref|ZP_04850998.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847183|gb|EES75188.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 215

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 15/190 (7%)

Query: 65  RWDLFQEQKLDSIVSSD--WPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119
               + E   ++I  ++   P  ++  + +  KD      +   R   +   +     + 
Sbjct: 29  EIVAYAEDGDEAIAQTERWMPDLILMDIRMPGKDGLETTREIKLRYPYVKIVLITVSDDA 88

Query: 120 ITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                 +      Y     +       L  +      +  +       LA      F   
Sbjct: 89  AHLFEALKQGAQGYLLKNLEPGTWLEYLRAIASDEAPLSSE-------LALRILQEFPVN 141

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G+   LT RE E L W+++G T+ EIA +L IS  TV N++ +I++K   + R   
Sbjct: 142 RRTSGEQPPLTAREREILGWVAQGMTNREIAGVLHISDQTVKNHLKNILQKLHLENRVQL 201

Query: 237 IAYAVRNNIV 246
             YA+    +
Sbjct: 202 TRYALEQGWI 211


>gi|13474964|ref|NP_106527.1| hypothetical protein mll8752 [Mesorhizobium loti MAFF303099]
 gi|14025713|dbj|BAB52313.1| mll8752 [Mesorhizobium loti MAFF303099]
          Length = 248

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 46/86 (53%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           ++  L  +      +      +  +L+ RE EC+ WI+ GK+S EI  ILGIS NTVN +
Sbjct: 161 QLAALHFHVRVTKGTSSNALKQVQDLSLREKECILWIARGKSSWEIGKILGISGNTVNFH 220

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           + + MRK  T +R+ A   A    IV
Sbjct: 221 LKNAMRKLDTASRTVAAIKATSLGIV 246


>gi|257899016|ref|ZP_05678669.1| regulatory protein [Enterococcus faecium Com15]
 gi|257836928|gb|EEV62002.1| regulatory protein [Enterococcus faecium Com15]
          Length = 210

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T     I   +       R++  +      +       M +  +    +
Sbjct: 94  IEAGAAGYLLKTSTAHEIADAIRATQRGERVLEPE------VTTKMMEKMSRRNEPVLHE 147

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +
Sbjct: 148 --ELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFK 205

Query: 243 NNIV 246
           + +V
Sbjct: 206 HGLV 209


>gi|228984618|ref|ZP_04144793.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775145|gb|EEM23536.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 204

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDK----YYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 42  PDIILMDLVMDEMDGVEATRSIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 101

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 102 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 153

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 154 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202


>gi|295095488|emb|CBK84578.1| transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 173

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           H L + IT    M N        V+   +    +  +   +    L ++ L    +    
Sbjct: 46  HGLRKGITQCLMMPNHALGF-LSVSCTSLQAHSISSEEVELRLQMLVQMALTTLLR---- 100

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
             ++     + + + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     +
Sbjct: 101 FEHETVMPPEMKFSKREREILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNK 160

Query: 234 SGAIAYAVRNNIV 246
                YA    ++
Sbjct: 161 IQIACYAAATGLI 173


>gi|328885551|emb|CCA58790.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 249

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 3/134 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L          D     +   +  +  G   L P  +  L D+L E    A  Q + 
Sbjct: 111 FPALRAGARGYLTKDAGGEEIVRALRDVTDGRAGLSPAVQRRLLDQLVEG---AGRQESP 167

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             +          LT RE E L  +++G ++ EIA  L IS  TV  +I ++  KT  + 
Sbjct: 168 VAAEGAAASSGDGLTERETEVLVLVADGLSNQEIAGRLRISTATVKTHINNLFAKTGVRD 227

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA ++ +V
Sbjct: 228 RAQAVRYAYQHGLV 241


>gi|229108996|ref|ZP_04238597.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15]
 gi|228674465|gb|EEL29708.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15]
          Length = 196

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 34  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 93

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +     D  LT RE E L  
Sbjct: 94  ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 145

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 146 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 194


>gi|218896470|ref|YP_002444881.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543325|gb|ACK95719.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 210

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 48  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 108 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 160 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|307266655|ref|ZP_07548184.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918318|gb|EFN48563.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 208

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 39/68 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE+E L  IS+G ++ EIA  L +S  TV N++ +I +K   K R+ A  
Sbjct: 138 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 197

Query: 239 YAVRNNIV 246
           Y ++N  +
Sbjct: 198 YMLKNETI 205


>gi|239978584|ref|ZP_04701108.1| two-component response regulator [Streptomyces albus J1074]
 gi|291450480|ref|ZP_06589870.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353429|gb|EFE80331.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPAHELVQAIRVVASGEAMLAPSVTRR-LLDKYAEHLPSGDEPVPDTLHTLTD 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLNKLGLRDRVQAAVYAYESGLV 218


>gi|304438628|ref|ZP_07398567.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304368466|gb|EFM22152.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 233

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     L   +  +  G   ++PK    L +RL+    ++     
Sbjct: 101 VLEMLKNGALGYLLKDVEPNVLIKAIHMVNEGNPFVYPK----LAERLFGTPAISGDVGR 156

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M K       +   LT RE++ L  I++G ++ +I   LG+S  TV N++ S+  K    
Sbjct: 157 MAKEI-WDESRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVN 215

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+ Y ++N IV
Sbjct: 216 DRTQALVYVLKNKIV 230


>gi|149182102|ref|ZP_01860586.1| DegU [Bacillus sp. SG-1]
 gi|148850204|gb|EDL64370.1| DegU [Bacillus sp. SG-1]
          Length = 225

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 3/133 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L          +    +L   V  +  G   + PK   +  + + +   LA  Q  
Sbjct: 91  VSHALKTGALGYLLKEMDSEALIEAVKVVAAGGSYIHPK---VTHNLISDYRRLANTQET 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++GK++  I   L IS  TV N++++I++K    
Sbjct: 148 GGFKQTEVRRPLHLLTRRECEVLQMLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVN 207

Query: 232 TRSGAIAYAVRNN 244
            R+ A+   ++N 
Sbjct: 208 DRTQAVVTGIKNG 220


>gi|302546669|ref|ZP_07299011.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|307330767|ref|ZP_07609903.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|302464287|gb|EFL27380.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
 gi|306883570|gb|EFN14620.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 223

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D           + E   A   L V  +     +    V +  P  ++  + 
Sbjct: 1   MAIRVLLVDDQPLLRTGFRMILE---AEQDLAVVGEAGDGLQALDQVRALQPDVVLMDIR 57

Query: 92  LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   D               P ++       L E +            L    A   +  
Sbjct: 58  MPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPATELVQA 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L   +    LL  Y  ++    +        LT REVE L  ++ G ++ 
Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEEPVPDTLHTLTEREVEVLKLVARGLSNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|213857580|ref|ZP_03384551.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 99

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 161 EIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            + LLA    +       D+    +   + RE E L W +EGKTS EIA+IL IS NTVN
Sbjct: 12  RLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVN 71

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  ++ +K     ++    YA    ++
Sbjct: 72  FHQKNMQKKFNAPNKTQIACYAAATGLI 99


>gi|254994407|ref|ZP_05276597.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
          Length = 187

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140
            DLV    +   +    ++Q   E    +  +  ++      ++    S    T   + I
Sbjct: 28  MDLVMD-EMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 86

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198
              +   +    ++  +              M +       K+    LT RE E L  I+
Sbjct: 87  ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 136

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 137 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 184


>gi|59714108|ref|YP_206883.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio
           fischeri ES114]
 gi|462557|sp|P35327|LUXS_VIBF1 RecName: Full=Transcriptional activator protein luxR
 gi|295436|gb|AAA27542.1| putative [Vibrio fischeri ES114]
 gi|59482356|gb|AAW87995.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio
           fischeri ES114]
          Length = 250

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 74/216 (34%), Gaps = 20/216 (9%)

Query: 51  ALTEYVGASH---FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
            L+E     H   +L          K D  +  ++P    +    +   +Y  V+     
Sbjct: 28  CLSEIAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDPVVDYSKS 87

Query: 108 LFCP----VFHTLPENITPPAGMDNR-------YCSLTFDVARIRIGLMLLFPKGRIILR 156
              P    VF         P  +            S     A    G++      + I  
Sbjct: 88  HHSPINWNVFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFAHSDKDIYT 147

Query: 157 DRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           D L+         +L +   N  K        D  LT RE ECL W SEGK++ +I+ IL
Sbjct: 148 DSLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGKSTWDISKIL 207

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G S  TV  ++ +   K  T  R  +I+ A+    +
Sbjct: 208 GCSERTVTFHLTNTQMKLNTTNRCQSISKAILTGAI 243


>gi|303248220|ref|ZP_07334483.1| transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302490358|gb|EFL50269.1| transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 258

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              V   +   L+ RE E L W+ EGK+S +IA++LGI   TV  ++A++MRK     R+
Sbjct: 184 RASVPDREPIALSRREREVLDWLKEGKSSWDIAMVLGIRERTVRFHVANLMRKLGAVNRA 243

Query: 235 GAIAYAVRNNIV 246
             +A A+R  ++
Sbjct: 244 QTVALALRRGLI 255


>gi|296448320|ref|ZP_06890211.1| transcriptional regulator, LuxR family [Methylosinus trichosporium
           OB3b]
 gi|296254166|gb|EFH01302.1| transcriptional regulator, LuxR family [Methylosinus trichosporium
           OB3b]
          Length = 254

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 90/240 (37%), Gaps = 24/240 (10%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD--SIVSSDWPFDLVR 88
           +L+  +  +D +  +   M    + +    + +          ++   +V+  +P +L  
Sbjct: 15  ELIDVLAEVDTSDKFVACMKGEMQRIVPHEWFICSVGRIGRNGIEPIHVVTHKFPDELFA 74

Query: 89  CMALSEKDKYYN-VLQRPTELFCPVFHTLPEN--------ITPPAGMDNRYCSLTFDVAR 139
            ++ S+     N VL R  E   P+     +                D R       V  
Sbjct: 75  LISGSDPKVLDNPVLSRWWETRAPIAINFEDCSGSWPQVMAERAIKFDARNLLGHGQVDI 134

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHW-------GKDFEL 186
               +            DR   + L      L A  A    S++          G+  EL
Sbjct: 135 GGAFVTYFSFHRIPQRLDRKQTLLLARIVPNLYAAFARAHPSFESAATVKRLNDGRGAEL 194

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T R++E L W+ +GKT+ EI+VILG+S + V  ++  I RK     R+ A+A A   +++
Sbjct: 195 TPRQIEILEWLRQGKTNWEISVILGMSVDNVKYHVKQITRKLQVANRTQAVAEAASRSVI 254


>gi|218781259|ref|YP_002432577.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762643|gb|ACL05109.1| transcriptional regulator, LuxR family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 287

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG T+ EI+ +L IS +TV +++  +  K     R+ A  +A +NN+
Sbjct: 227 LTTREIQVLRLMAEGFTNGEISDMLEISPHTVKSHVIHVFNKLGVNDRTQAAVWAAKNNL 286

Query: 246 V 246
           V
Sbjct: 287 V 287


>gi|134299954|ref|YP_001113450.1| two component LuxR family transcriptional regulator
           [Desulfotomaculum reducens MI-1]
 gi|134052654|gb|ABO50625.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum reducens MI-1]
          Length = 218

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S D    K   LT RE+E L  +++G+++  IA  L IS  TV N++ +I +K    
Sbjct: 142 RLSSGDYSEKKHLNLTEREIEVLKQVAKGQSNKAIANALYISEKTVKNHLTNIFQKIGVA 201

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YA++  +V
Sbjct: 202 DRTQAALYAIKEKLV 216


>gi|300914706|ref|ZP_07132022.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X561]
 gi|307724060|ref|YP_003903811.1| LuxR family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320115614|ref|YP_004185773.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|300889641|gb|EFK84787.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X561]
 gi|307581121|gb|ADN54520.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X513]
 gi|319928705|gb|ADV79390.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 205

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  IS+G ++ EIA  L +S  TV N++ +I +K   K R+ A  Y ++N 
Sbjct: 141 DLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 200

Query: 245 IV 246
            +
Sbjct: 201 TI 202


>gi|326391463|ref|ZP_08212998.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992489|gb|EGD50946.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 208

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 39/68 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE+E L  IS+G ++ EIA  L +S  TV N++ +I +K   K R+ A  
Sbjct: 138 HENLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAI 197

Query: 239 YAVRNNIV 246
           Y ++N  +
Sbjct: 198 YMLKNETI 205


>gi|302533532|ref|ZP_07285874.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442427|gb|EFL14243.1| two-component system response regulator [Streptomyces sp. C]
          Length = 223

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 76/222 (34%), Gaps = 11/222 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D           + E   A   L+V  +     +    V +  P  ++  + 
Sbjct: 1   MAIRVLLVDDQPLLRTGFRMILE---AEGDLVVVGEAGDGLQALEQVRALQPDVVLMDIR 57

Query: 92  LSEKDKYYNVLQ-------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   D      Q        P ++       L E +            L    A   +  
Sbjct: 58  MPRMDGVEATRQITGPDRNGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQA 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L   +    LL  Y  ++             LT REVE L  ++ G ++ 
Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYAGHLPSGEQSLPDTLGTLTEREVEVLKLVARGLSNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|239932265|ref|ZP_04689218.1| two-component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291440629|ref|ZP_06580019.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343524|gb|EFE70480.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLHTLTE 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|297195362|ref|ZP_06912760.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719268|gb|EDY63176.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYADHLPSGEEPVPDTLHTLTD 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|238027274|ref|YP_002911505.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237876468|gb|ACR28801.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 237

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 16/184 (8%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENI--TPPAGMDNR 129
           + S++P    +    +        ++       PV      F   PE        G+ + 
Sbjct: 54  LLSNYPEAWKQRYMEAGYIDIDPTMKHMRRFQTPVVWTDAFFSRTPELWRDAQAHGLRHG 113

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFK--SYDVHWGK 182
           +   TFD      G++ L      +    L         L++     M +     +    
Sbjct: 114 WSQSTFDSC-GVSGMLTLARSTGPVTPAELERNEFRMRWLVSTTHLAMTRVLMPKLMPDT 172

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A  
Sbjct: 173 ERGLTDREVEVLKWAADGKTSGEISTILRISVDTVNFHVKNAVAKLKTVNKTSAVVRAAM 232

Query: 243 NNIV 246
             ++
Sbjct: 233 LGLL 236


>gi|228911248|ref|ZP_04075053.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 200]
 gi|228848424|gb|EEM93273.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 200]
          Length = 215

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANTLLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +  + +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPFLQVGVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|229074728|ref|ZP_04207749.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18]
 gi|228708471|gb|EEL60623.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18]
          Length = 199

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 37  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 96

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 97  ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 148

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 149 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 197


>gi|228920248|ref|ZP_04083596.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228926569|ref|ZP_04089640.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229121079|ref|ZP_04250319.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201]
 gi|229138230|ref|ZP_04266826.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26]
 gi|229183733|ref|ZP_04310953.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1]
 gi|229195738|ref|ZP_04322500.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293]
 gi|228587744|gb|EEK45800.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293]
 gi|228599776|gb|EEK57376.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1]
 gi|228645262|gb|EEL01498.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26]
 gi|228662408|gb|EEL18008.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201]
 gi|228833157|gb|EEM78723.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228839447|gb|EEM84740.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 204

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 42  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 101

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 102 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 153

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 154 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202


>gi|170689229|ref|ZP_02880425.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170666784|gb|EDT17551.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 210

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 48  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 108 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 160 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|149907939|ref|ZP_01896607.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
 gi|149808945|gb|EDM68876.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
          Length = 244

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
             G D     +  DV    I L++       +  +    I  +A +   +F     +  K
Sbjct: 119 YVGSDGLSILVKTDVGSTLISLVI---PESSLDAEHNQLIEYIAPHIHEVFNRQGENIRK 175

Query: 183 DF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE+E L W  EGK++ + ++IL IS  TV  + ++I +K     RS AIA 
Sbjct: 176 SLWKPNLSKRELEVLNWAKEGKSNWDTSLILAISERTVKFHFSNIFKKLEVVNRSQAIAR 235

Query: 240 AVRNNIV 246
           A+   +V
Sbjct: 236 AIHFGLV 242


>gi|315649433|ref|ZP_07902521.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315275209|gb|EFU38579.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 214

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 5/162 (3%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLV    +   +    ++ +   L   V  +  ++      ++    S     +R    
Sbjct: 56  MDLVMD-GMDGIETTRQLMNQFPNLKVIVLTSYLDDEKMYPVIEAGAFSYLLKTSRA--- 111

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              +    R   R +      +A+   N F+          +LT RE+E L  +++GK++
Sbjct: 112 -SEVADAIRAAARGQSVLESQVASKMMNRFRHPQNEAPAHNDLTDREMEVLRLVAQGKSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L I   TV  ++ +I+ K   + R+ A  YA +N +
Sbjct: 171 QDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212


>gi|304405086|ref|ZP_07386746.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345965|gb|EFM11799.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 227

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             +AA   N F+       K   +LT RE++ L  +++GK++ EIA  L I   TV  ++
Sbjct: 141 SQVAAKMMNRFRQPQQTTAKAHEQLTEREMDVLKLVAQGKSNQEIADDLFIGIKTVKFHV 200

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
            +I  K     R+ A  YA +  +
Sbjct: 201 TNIFSKLGVDDRTQAAIYAHKQGL 224


>gi|289434290|ref|YP_003464162.1| DNA-binding response regulator, LuxR family [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170534|emb|CBH27074.1| DNA-binding response regulator, LuxR family [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313633930|gb|EFS00643.1| sensory transduction protein LiaR [Listeria seeligeri FSL N1-067]
 gi|313638502|gb|EFS03673.1| sensory transduction protein LiaR [Listeria seeligeri FSL S4-171]
          Length = 212

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140
            DLV    +   +    ++Q   E    +  +  ++      ++    S    T   + I
Sbjct: 53  MDLVMD-EMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198
              +   +    ++  +              M +       K+    LT RE E L  I+
Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|297563570|ref|YP_003682544.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848018|gb|ADH70038.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 219

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 71/177 (40%), Gaps = 6/177 (3%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNR 129
           E+    +V  D    ++  +  + +      + RP ++       L E +        + 
Sbjct: 47  ERLRPDVVVMDVRMPVLDGIEATRRLA-GAGVDRPVKVLVVTTFNLDEYVYEALRAGASG 105

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +       A++  G+  +     ++  +   +  L+  Y A +             LT R
Sbjct: 106 FLLKDAPPAQLLHGIRTVSTGAALLDPEVTRQ--LVGRYAARIRPPDAAAAD--ARLTPR 161

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  I+ G ++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA R  +V
Sbjct: 162 ELEVLRLIANGLSNGEIAASLFISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGLV 218


>gi|29831611|ref|NP_826245.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608727|dbj|BAC72780.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 248

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 130 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 187

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 188 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 245


>gi|229164358|ref|ZP_04292288.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           R309803]
 gi|228619101|gb|EEK75997.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           R309803]
          Length = 215

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|311032412|ref|ZP_07710502.1| two-component response regulator-like protein [Bacillus sp. m3-13]
          Length = 210

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 13/176 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPP---AGMDNR 129
            +  +  P  ++  + + E D       +++R       +  +  +              
Sbjct: 41  ELAEALKPDVILMDLVMPEMDGIEATKQIVERNIPSKVLILTSFADQDHVIPAIRAGATG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     +  ++   +  +      +          + ++  + F           ELT R
Sbjct: 101 YQLKDVEPDQLIESIRAVHRGESQLHPK-------VTSHVMSHFTKGFGSTNLHEELTKR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+E L  I++GK++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ I
Sbjct: 154 ELEVLAEIAKGKSNKEIASSLFITEKTVKTHVSNILAKLEVADRTQAALYAVKHGI 209


>gi|229000199|ref|ZP_04159768.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
 gi|229007721|ref|ZP_04165313.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228753589|gb|EEM03035.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228759531|gb|EEM08508.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
          Length = 215

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 13/141 (9%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
           F    H LP      +G    Y     +  ++   +   +     +  D      + +A 
Sbjct: 85  FSDQAHVLPALKAGASG----YILKDVEPDQLVEAIRSAYKGNIQLHPD------IASAL 134

Query: 169 QANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            +  F   +     +     LT RE E L  +++G ++ EIA +L I+  TV  +++SI+
Sbjct: 135 LSQTFPQEEQQESSNIHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSIL 194

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R+ A  YAV+N IV
Sbjct: 195 GKLNLSDRTQAALYAVKNGIV 215


>gi|299069138|emb|CBJ40391.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (LuxR family) [Ralstonia
           solanacearum CMR15]
          Length = 238

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPP--AGMDN 128
           ++ +++P         +        + +      P+      F  +P         G+  
Sbjct: 54  VLLNNYPQAWRVRYLEAGYLHVDPSVAQACRSQAPIVWSDRLFQDVPALWDEAKAHGLRV 113

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWG 181
            +   + D +    G++ L      +    L E       +  +A    +     DV   
Sbjct: 114 GWAQSSLD-SLGVGGMLSLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGY 172

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  LT REVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K     ++ A+  A 
Sbjct: 173 VDDSLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAA 232

Query: 242 RNNIV 246
               +
Sbjct: 233 MLGYL 237


>gi|330952863|gb|EGH53123.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 254

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            R  L E GLLA A+Q   +  +D  +       LT RE ECL+W +EG T+ EIA  L 
Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLN 217

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  TV  ++ S M+K   K R  A+  AV   ++
Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252


>gi|229043280|ref|ZP_04191002.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676]
 gi|229078723|ref|ZP_04211277.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2]
 gi|228704596|gb|EEL57028.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2]
 gi|228726141|gb|EEL77376.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676]
          Length = 199

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 37  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 96

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +     D  LT RE E L  
Sbjct: 97  ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 148

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 149 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 197


>gi|47093968|ref|ZP_00231703.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|258611471|ref|ZP_05711518.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|47017667|gb|EAL08465.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|258600349|gb|EEW13674.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
          Length = 171

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140
            DLV    +   +    ++Q   E    +  +  ++      ++    S    T   + I
Sbjct: 12  MDLVMD-EMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 70

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198
              +   +    ++  +              M +       K+    LT RE E L  I+
Sbjct: 71  ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 120

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 121 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 168


>gi|238927983|ref|ZP_04659743.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|238883943|gb|EEQ47581.1| response regulator [Selenomonas flueggei ATCC 43531]
          Length = 223

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     L   +  +  G   ++PK    L +RL+    ++     
Sbjct: 91  VLELLKNGALGYLLKDVEPNVLIKAIHMVNEGNPFVYPK----LAERLFGTSSISGDVGR 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M K       +   LT RE++ L  I++G ++ +I   LG+S  TV N++ S+  K    
Sbjct: 147 MAKEI-WDESRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVN 205

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+ Y ++N IV
Sbjct: 206 DRTQALVYVLKNKIV 220


>gi|228914112|ref|ZP_04077732.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229155107|ref|ZP_04283220.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342]
 gi|228628392|gb|EEK85106.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342]
 gi|228845565|gb|EEM90596.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 204

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 42  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 101

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 102 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 153

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 154 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202


>gi|16803062|ref|NP_464547.1| hypothetical protein lmo1022 [Listeria monocytogenes EGD-e]
 gi|46907254|ref|YP_013643.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47096354|ref|ZP_00233950.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217964878|ref|YP_002350556.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|224500732|ref|ZP_03669081.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes Finland 1988]
 gi|224502663|ref|ZP_03670970.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes FSL R2-561]
 gi|226223640|ref|YP_002757747.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254823705|ref|ZP_05228706.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254832231|ref|ZP_05236886.1| two-component response regulator [Listeria monocytogenes 10403S]
 gi|254852518|ref|ZP_05241866.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254898804|ref|ZP_05258728.1| two-component response regulator [Listeria monocytogenes J0161]
 gi|254911707|ref|ZP_05261719.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254931406|ref|ZP_05264765.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|254936033|ref|ZP_05267730.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|255520598|ref|ZP_05387835.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
 gi|290893828|ref|ZP_06556807.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|300764232|ref|ZP_07074227.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|315281752|ref|ZP_07870312.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120]
 gi|16410424|emb|CAC99100.1| lmo1022 [Listeria monocytogenes EGD-e]
 gi|46880521|gb|AAT03820.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47015312|gb|EAL06249.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217334148|gb|ACK39942.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|225876102|emb|CAS04808.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605826|gb|EEW18434.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|258608621|gb|EEW21229.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|290556655|gb|EFD90190.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|293582956|gb|EFF94988.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293589656|gb|EFF97990.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|293592927|gb|EFG00688.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300515222|gb|EFK42274.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|307570563|emb|CAR83742.1| DNA-binding response regulator, LuxR family [Listeria monocytogenes
           L99]
 gi|313614594|gb|EFR88178.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120]
 gi|328466914|gb|EGF38023.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328475371|gb|EGF46144.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332311431|gb|EGJ24526.1| Transcriptional regulatory protein [Listeria monocytogenes str.
           Scott A]
          Length = 212

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140
            DLV    +   +    ++Q   E    +  +  ++      ++    S    T   + I
Sbjct: 53  MDLVMD-EMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198
              +   +    ++  +              M +       K+    LT RE E L  I+
Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|15924838|ref|NP_372372.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927422|ref|NP_374955.1| hypothetical protein SA1666 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268320|ref|YP_001247263.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394382|ref|YP_001317057.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980164|ref|YP_001442423.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253315179|ref|ZP_04838392.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|255006636|ref|ZP_05145237.2| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257793793|ref|ZP_05642772.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|258413730|ref|ZP_05682003.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|258420763|ref|ZP_05683702.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|258438424|ref|ZP_05689708.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|258443869|ref|ZP_05692208.1| two component transcriptional regulator [Staphylococcus aureus
           A8115]
 gi|258447324|ref|ZP_05695471.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258448193|ref|ZP_05696320.1| response regulator receiver [Staphylococcus aureus A6224]
 gi|258453374|ref|ZP_05701357.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|269203485|ref|YP_003282754.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282895146|ref|ZP_06303365.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A8117]
 gi|282928586|ref|ZP_06336185.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A10102]
 gi|295406155|ref|ZP_06815963.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819]
 gi|296276020|ref|ZP_06858527.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297244922|ref|ZP_06928799.1| two-component system [Staphylococcus aureus A8796]
 gi|13701641|dbj|BAB42934.1| SA1666 [Staphylococcus aureus subsp. aureus N315]
 gi|14247620|dbj|BAB58010.1| two-component response regulator homolog [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147741389|gb|ABQ49687.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946834|gb|ABR52770.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722299|dbj|BAF78716.1| two-component response regulator homolog [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257787765|gb|EEV26105.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|257839517|gb|EEV63988.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|257843367|gb|EEV67777.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|257848468|gb|EEV72459.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|257851275|gb|EEV75218.1| two component transcriptional regulator [Staphylococcus aureus
           A8115]
 gi|257853911|gb|EEV76867.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257858432|gb|EEV81308.1| response regulator receiver [Staphylococcus aureus A6224]
 gi|257864466|gb|EEV87211.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262075775|gb|ACY11748.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282589795|gb|EFB94880.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A10102]
 gi|282762490|gb|EFC02631.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A8117]
 gi|285817528|gb|ADC38015.1| Two-component response regulator-like protein [Staphylococcus
           aureus 04-02981]
 gi|294969152|gb|EFG45173.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819]
 gi|297178002|gb|EFH37250.1| two-component system [Staphylococcus aureus A8796]
 gi|312830220|emb|CBX35062.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130508|gb|EFT86494.1| hypothetical protein CGSSa03_09695 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727450|gb|EGG63906.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 207

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124
              E  L+ +   + P  ++  + +   +       +     E+   V  +  ++    +
Sbjct: 34  ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPEIKVLVLTSYVDDEHVIS 93

Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            ++   + Y     +  ++   +  +    ++I                ++F++      
Sbjct: 94  AINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKA-----------QDVFETVSQKPH 142

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+
Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202

Query: 242 RNNIV 246
            N ++
Sbjct: 203 ENKLI 207


>gi|302561540|ref|ZP_07313882.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302479158|gb|EFL42251.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 223

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P +++  + +                   P ++       L E +        
Sbjct: 42  DQVRALQPDEVLMDIRMPRMAGVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYATHLPSGDEPVPDTLHTLTE 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|170076532|ref|YP_001733171.1| response regulator receiver [Synechococcus sp. PCC 7002]
 gi|169887394|gb|ACB01102.1| Response regulator receiver, LuxR domain [Synechococcus sp. PCC
           7002]
          Length = 231

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 3/159 (1%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-PPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   E  +     Q    +     H+ P  I          YC    D   + + +  +
Sbjct: 62  GIGGVETCRQIKQQQPQLPILVLTSHSQPTLINRLIEAQAQGYCLKGVDAESLILAIQSI 121

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                        +I   A +Q  M +       +D  LT RE E L  I+ GK++ EIA
Sbjct: 122 AAGASWWDAQATQQIR--AQFQQPMAEMPRSVPAQDNPLTQREGEILALIANGKSNSEIA 179

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L I+ +TV  ++ +I++K   + R+ A+  A+R+ ++
Sbjct: 180 ETLYIAASTVRVHVHAILQKLEARDRTQAVVIALRHGLI 218


>gi|261409282|ref|YP_003245523.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329924974|ref|ZP_08279920.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|261285745|gb|ACX67716.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328940263|gb|EGG36593.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 214

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 7/173 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGMDNRYCS 132
            +     P  ++  + +   D      +   +   L   V  +  ++      ++    S
Sbjct: 44  RLAQEYHPDVVLMDLVMDGMDGIETTRELMKQFPNLKVIVLTSYLDDEKMYPVIEAGAFS 103

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                +R       +    R   R +      +A+   N F+          +LT RE+E
Sbjct: 104 YLLKTSRA----SEVADAIRAAARGQSVLESQVASKMMNRFRHPQNEAPAHNDLTDREME 159

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  +++GK++ +IA  L I   TV  ++ +I+ K   + R+ A  YA +N +
Sbjct: 160 VLRLLAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212


>gi|171315924|ref|ZP_02905153.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098927|gb|EDT43717.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 228

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGREV 191
             RI +  +      I    L        Y A+   + +           +    T RE 
Sbjct: 113 HGRIAMWSVARSADPISDLELAATEGRLIYLAHAAHAVNSRLADAPAAAMQMGPFTTREK 172

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W ++GKT+ EIA IL IS  T+  ++ +IM K  +  ++ AI  AV   I+
Sbjct: 173 EVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227


>gi|158317584|ref|YP_001510092.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112989|gb|ABW15186.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 237

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 5/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIG 143
           VR       D    + ++       +     E              Y      +  +   
Sbjct: 74  VRMPRRGGIDATSAIKEKVPSAKIVMLTISDEEADLFDAIKAGAMGYLLKEISIDEVAAD 133

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++    +I         LL+ + A +    D        LT RE+E L  +++G  +
Sbjct: 134 IRAVYNGQSLISPS--MASKLLSEFAAMIKTKDDRPQLPTPRLTDREMEVLRLVAKGLNN 191

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS NTV N+I +I+ K    +R  A+ YAVR  ++
Sbjct: 192 RDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234


>gi|229199533|ref|ZP_04326194.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1293]
 gi|228583938|gb|EEK42095.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1293]
          Length = 215

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|170697389|ref|ZP_02888481.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137720|gb|EDT05956.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 228

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGREV 191
             RI +  +      I    L        Y A+   + +           +    T RE 
Sbjct: 113 HGRIAMWSVARSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFTTREK 172

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W ++GKT+ EIA IL IS  T+  ++ +IM K  +  ++ AI  AV   I+
Sbjct: 173 EVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227


>gi|228951917|ref|ZP_04114015.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807840|gb|EEM54361.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 206

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 44  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 103

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +     D  LT RE E L  
Sbjct: 104 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 156 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 204


>gi|229590001|ref|YP_002872120.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361867|emb|CAY48766.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 221

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 78/203 (38%), Gaps = 17/203 (8%)

Query: 49  MYALTEYVGASHFL-------LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
           +  L++ +  + ++       L   +  Q ++ D I+       ++  +   E  +    
Sbjct: 23  LAMLSDALDDAGYMVLVALDGLSALNRVQRRRPDLILLD----AMMPGLDGFETCRRLKA 78

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDR 158
                ++       L +      G +     Y +       +   +       RI+L  R
Sbjct: 79  QPASADIPVVFMTGLTDTRHVVQGFEVGGSDYVTKPIQTDEVLARVAAHLRTSRILLSAR 138

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             +   +   +    +         F+LT REVE L W++ GKT+ +I  ILG+S  TVN
Sbjct: 139 EAQQPSVLTLED---EPAHRLLSARFQLTEREVEVLRWVACGKTNRDIGDILGLSPRTVN 195

Query: 219 NYIASIMRKTATKTRSGAIAYAV 241
            ++  +  K   +TR+ A + A+
Sbjct: 196 KHLEHVYVKLGVETRTAATSVAL 218


>gi|254387129|ref|ZP_05002401.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345946|gb|EDX26912.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 125 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 182

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 183 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 240


>gi|156744333|ref|YP_001434462.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156235661|gb|ABU60444.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 231

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 165 LAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +AA   N F+              L+ RE++ L  ++ G+T+ EIA +L IS  TV N+I
Sbjct: 137 VAAQVLNAFRQMAAEEDTQSIYSPLSPRELQVLELVAAGRTNKEIAKVLDISNQTVKNHI 196

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           +SI+RK A   R+ A+ YA+R   +
Sbjct: 197 SSILRKLAVNDRTQAVVYAMRRGWI 221


>gi|30261536|ref|NP_843913.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42780637|ref|NP_977884.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47526732|ref|YP_018081.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184365|ref|YP_027617.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481072|ref|YP_035656.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65318804|ref|ZP_00391763.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|118476998|ref|YP_894149.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|163939354|ref|YP_001644238.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|165872654|ref|ZP_02217284.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634292|ref|ZP_02392613.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641615|ref|ZP_02399861.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170706386|ref|ZP_02896847.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651401|ref|ZP_02934190.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568032|ref|ZP_03020942.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036887|ref|ZP_03104273.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196047716|ref|ZP_03114919.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206978391|ref|ZP_03239262.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959016|ref|YP_002337564.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095172|ref|YP_002529232.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225863403|ref|YP_002748781.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227815714|ref|YP_002815723.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229599953|ref|YP_002865949.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682399|ref|ZP_05146260.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721216|ref|ZP_05183006.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254733815|ref|ZP_05191529.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740493|ref|ZP_05198184.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753884|ref|ZP_05205919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758979|ref|ZP_05211006.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118514|ref|ZP_07056253.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301053077|ref|YP_003791288.1| response regulator [Bacillus anthracis CI]
 gi|30255390|gb|AAP25399.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42736557|gb|AAS40492.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47501880|gb|AAT30556.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178292|gb|AAT53668.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49332628|gb|AAT63274.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118416223|gb|ABK84642.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|163861551|gb|ABY42610.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
 gi|164711598|gb|EDR17145.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510408|gb|EDR85808.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530180|gb|EDR92906.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128920|gb|EDS97786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172082679|gb|EDT67742.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560766|gb|EDV14741.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990509|gb|EDX54491.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196021466|gb|EDX60170.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206743396|gb|EDZ54832.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065203|gb|ACJ79453.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239230|gb|ACM11940.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225787204|gb|ACO27421.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227006221|gb|ACP15964.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229264361|gb|ACQ45998.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724038|gb|EFI64741.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300375246|gb|ADK04150.1| response regulator [Bacillus cereus biovar anthracis str. CI]
 gi|324325555|gb|ADY20815.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 210

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 48  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 108 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 160 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|319793534|ref|YP_004155174.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315595997|gb|ADU37063.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 255

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 3/218 (1%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            + + R+I  +      +++    + +     LL R + F    +D  +S    F+L+  
Sbjct: 40  DEFVRRVIAQELLSDMRIQLEGQADSIREGRKLLARHE-FDVLMVDLRLSDGMGFELISE 98

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               + +    ++    E    V        T     +    S    V  +  G   + P
Sbjct: 99  ARSHQSNGEI-IVISALEDDSHVLRAFELGATGYLLKNAWLQSFAEAVLHVVNGGAAITP 157

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAV 208
           +    L  RL      A        +      G+D  LT RE E L +++ G  S EI  
Sbjct: 158 RLARRLLHRLNNNHRHAHQGDPAGHAPPPRQPGRDATLTPRESEILRFVACGYVSAEIGE 217

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LGI+  TVN +I SI +K    +R+ A+ +AV   ++
Sbjct: 218 RLGITWQTVNVHIKSIYKKLHVHSRAQAVNFAVHTGLI 255


>gi|320547873|ref|ZP_08042156.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320447413|gb|EFW88173.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 214

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +   +    L  E K D +V      DLV    +S  +    +L+   E    V
Sbjct: 30  IEVVGEAGNGIDGIKLALELKPDVVV-----MDLVMP-EMSGVEATLKLLKEWKEAKILV 83

Query: 113 FHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
             +  +N             Y   T   A I   +  +      I  +            
Sbjct: 84  LTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIHKVARGDLAIETE-----------V 132

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
               K++D       +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K  
Sbjct: 133 DKKIKAHDQKPELHEDLTARERDILKLLAKGYDNQTIADELFISLKTVKTHVSNILAKLE 192

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A+ YA ++++V
Sbjct: 193 VDDRTQAVVYAFKHHLV 209


>gi|229172177|ref|ZP_04299742.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3]
 gi|228611520|gb|EEK68777.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3]
          Length = 207

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 45  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 104

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 105 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 156

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 157 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 205


>gi|289811480|ref|ZP_06542109.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 115

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 161 EIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            + LLA    +       D+    +   + RE E L W +EGKTS EIA+IL IS NTVN
Sbjct: 28  RLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVN 87

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  ++ +K     ++    YA    ++
Sbjct: 88  FHQKNMQKKFNAPNKTQIACYAAATGLI 115


>gi|254392873|ref|ZP_05008042.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812928|ref|ZP_06771571.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706529|gb|EDY52341.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325527|gb|EFG07170.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 269

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 151 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 208

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 209 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 266


>gi|329929253|ref|ZP_08283011.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328936739|gb|EGG33180.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 220

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 13/181 (7%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP-PAGMDNRYC 131
            L  +V  D    ++  +  + + K      +   +         +++ P        Y 
Sbjct: 46  LLPDVVLMDLNMPVLNGIDTTARLKKELPYIK---VIVLTSFVDYDHVLPAIRAGARGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------ 185
               +   +  G+  +F     +  D     GLL  +  +     + +     E      
Sbjct: 103 LKDIEPEELVAGIRRVFQGQVELHPDA---AGLLMTHVTSPAGEDEANGSSHQEAAQLNK 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G  + EI+  L I+  TV  +++ ++ K     R+ A  YA+++ I
Sbjct: 160 LTRREQEVLQLIASGMNNREISEALYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGI 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|311069822|ref|YP_003974745.1| two-component response regulator YvqE [Bacillus atrophaeus 1942]
 gi|310870339|gb|ADP33814.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus atrophaeus 1942]
          Length = 211

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 41/82 (50%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A    +  +  +        LT RE+E L  ++EGKT+ EI   L I+  TV  ++ +I
Sbjct: 129 VAGKVLSRLRHSNDSALPHETLTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHVTNI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K     R+ A  YA RN +V
Sbjct: 189 LSKLEVADRTQAAVYAHRNKLV 210


>gi|298245147|ref|ZP_06968953.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552628|gb|EFH86493.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 3/184 (1%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           ++R +      +D+ ++S  P ++ R        +   ++  P+E    +F ++      
Sbjct: 44  IIRTNTADVALIDAGLTSSDPLEIARQTRHLAP-RTAIIMLTPSEDEERLFQSIKVGAAA 102

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
               +     L   V ++  G  L+     ++ + +L    L + ++  + K        
Sbjct: 103 YYTRNITSEELVDAVRKVSQGEYLIN--DDVLSKPQLASRVLRSFHELTVEKEEGTPKDS 160

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ REVE L +I+ G ++ EIA  L IS  TV N+I SI++K +   R+ A+ +A+R
Sbjct: 161 YSPLSSREVEILDYIARGNSNKEIAKSLKISDQTVKNHITSILKKLSVSDRTAAVVHALR 220

Query: 243 NNIV 246
           +  +
Sbjct: 221 HGWI 224


>gi|293611186|ref|ZP_06693484.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826437|gb|EFF84804.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 238

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 83/237 (35%), Gaps = 24/237 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            DLL+  + +         + +    +G  +  + +       E K  +I+ +++P    
Sbjct: 6   EDLLSEFLIVKNEYQLFEIVKSTASKLGFDYCAYGMQSPLSIAEPK--TIMLNNYPEAWQ 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITPPAGMDNRYCSLTFDVARIR 141
           +        K    +Q       P+        T  E                   +R  
Sbjct: 64  KRYLEQHYVKIDPTVQHCMVSLQPLVWSSQSAKTQEEKDFWEEARSYGLNVGWAQSSRDF 123

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------------DFELTGR 189
           IG   +    R    D+L E    A Y    + S  VH               +  LT R
Sbjct: 124 IGTRGMLTLAR--SSDQLSEKEQKAQYTNMYWLSQTVHSSIAKVVNEMEFAQFNLYLTNR 181

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   AV   ++
Sbjct: 182 EKEALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|289625636|ref|ZP_06458590.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646651|ref|ZP_06477994.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488410|ref|ZP_07006441.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157035|gb|EFH98124.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330868197|gb|EGH02906.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 254

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L 
Sbjct: 158 ARQSLAEFGLLAQAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  TV  ++ S M+K   K R  A+  AV   ++
Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252


>gi|228938652|ref|ZP_04101257.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228957814|ref|ZP_04119555.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228971533|ref|ZP_04132157.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978144|ref|ZP_04138522.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407]
 gi|229126854|ref|ZP_04255866.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4]
 gi|229144139|ref|ZP_04272554.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24]
 gi|229149739|ref|ZP_04277969.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550]
 gi|229177946|ref|ZP_04305318.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W]
 gi|229189620|ref|ZP_04316635.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876]
 gi|228593884|gb|EEK51688.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876]
 gi|228605434|gb|EEK62883.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W]
 gi|228633770|gb|EEK90369.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550]
 gi|228639358|gb|EEK95773.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24]
 gi|228656794|gb|EEL12620.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4]
 gi|228781616|gb|EEM29816.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407]
 gi|228788192|gb|EEM36147.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228801896|gb|EEM48772.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228821028|gb|EEM67048.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 206

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 44  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 103

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +     D  LT RE E L  
Sbjct: 104 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 156 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 204


>gi|159900552|ref|YP_001546799.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893591|gb|ABX06671.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 250

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDF-ELT 187
           Y S T D   +   + ++      I    L    + AA   +  + + D H    +  ++
Sbjct: 120 YLSRTIDWDDLINSVDMVRSGNYPINDLVLNTPAVAAAVMDSFRQLTMDTHTEHVYSPMS 179

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G+T+ EIA  L IS  TV N+I+SI+RK A   R+ A+ +A++   +
Sbjct: 180 PREIEVLELVAAGQTNKEIAARLEISNQTVKNHISSILRKLAVNDRTQAVVFALQRGWI 238


>gi|172058475|ref|YP_001814935.1| two component LuxR family transcriptional regulator
           [Exiguobacterium sibiricum 255-15]
 gi|171990996|gb|ACB61918.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sibiricum 255-15]
          Length = 231

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 15/183 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF--------------CPVFHTLPENIT 121
            +V +  P  ++  + + + +      +R  E+                 V H L     
Sbjct: 45  PLVEAHQPDIVLMDINMPKVNG-VEATKRLMEVHPEVRVIILSIHDDETYVMHALGAGAV 103

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                +     L   +  +      + PK    L      +  +    ++      V   
Sbjct: 104 GYLLKEMATDELVNAIRSVYREGGYVHPKVTPNLLQEYRRLMKMKQTMSSQPIEKRVAEA 163

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE E L  +++G ++  I+  L IS  TV N+++SI+RK     R+GA+  A+
Sbjct: 164 PLHVLTRRECEVLQLLADGFSNRAISDTLFISEKTVKNHVSSILRKMNVPDRTGAVVEAI 223

Query: 242 RNN 244
           R  
Sbjct: 224 RRG 226


>gi|330969598|gb|EGH69664.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 254

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            R  L E GLLA A+Q   +  +D  +       LT RE ECL+W +EG T+ EIA  L 
Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLN 217

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  TV  ++ S M+K   K R  A+  AV   ++
Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252


>gi|311067417|ref|YP_003972340.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310867934|gb|ADP31409.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 215

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 46/85 (54%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              ++     +M   ++    K ++LT RE + L  I+ GK++ EIA  L IS  TV  +
Sbjct: 125 SSAIMPHVLTHMRTQHEPEKEKYYQLTRREKDVLMEIASGKSNKEIAASLFISEKTVKTH 184

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
           +++++ K     R+ A  +AV++++
Sbjct: 185 VSNLLAKLDVADRTQAALFAVKHHL 209


>gi|218460014|ref|ZP_03500105.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 198

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 10/178 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPEN-ITPPAGMDN 128
           +  +  +  +  PF     MA           +R  ++    F H L +  + P  G + 
Sbjct: 28  DPMVRYLAHAQRPFRWRESMAAFNG---STHRRRMEQMMVDAFGHGLEDGYLFPIHGRNG 84

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
              SL+     I +  + +      + R   W +  L        ++ +     +  LT 
Sbjct: 85  ILGSLSLGGKPIELSPVEIALL-EAVARKTFWRLLELTGEA----EALETVLPAETPLTR 139

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+ ++
Sbjct: 140 REMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHGLI 197


>gi|167037195|ref|YP_001664773.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040665|ref|YP_001663650.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter sp. X514]
 gi|166854905|gb|ABY93314.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X514]
 gi|166856029|gb|ABY94437.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
          Length = 208

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  IS+G ++ EIA  L +S  TV N++ +I +K   K R+ A  Y ++N 
Sbjct: 144 DLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 203

Query: 245 IV 246
            +
Sbjct: 204 TI 205


>gi|150376321|ref|YP_001312917.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150030868|gb|ABR62984.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 309

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            +     L         S D    + F+LT RE E L WI++GK++ +I  ILG+S  TV
Sbjct: 220 AIGANEFLFRLTTENGMSDDETLRQHFQLTPRESEVLLWIAKGKSNRDIGEILGLSSRTV 279

Query: 218 NNYIASIMRKTATKTRSGAIAYAVR--NNI 245
             ++  I  K   + R+ A   A +  + I
Sbjct: 280 TKHLEQIYVKLGVENRASAAVKATQVLHGI 309


>gi|218232786|ref|YP_002370188.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218160743|gb|ACK60735.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 215

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|52143908|ref|YP_082920.1| response regulator [Bacillus cereus E33L]
 gi|51977377|gb|AAU18927.1| response regulator [Bacillus cereus E33L]
          Length = 210

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + + E  +     + M +  +    +  ELT RE E L  I+EGK++ EIA  L I+  T
Sbjct: 122 ETVLEPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLLIAEGKSNQEIADELFIALKT 179

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  ++++I+ K     R+ A+ YA R+ +
Sbjct: 180 VKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|47569107|ref|ZP_00239795.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|47554178|gb|EAL12541.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
          Length = 132

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + + E  +     + M +  +    +  ELT RE E L  I+EGK++ EIA  L I+  T
Sbjct: 44  ETVLEPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLLIAEGKSNQEIADELFIALKT 101

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  ++++I+ K     R+ A+ YA R+ +
Sbjct: 102 VKTHVSNILNKLNVSDRTQAVIYAFRHQL 130


>gi|206970021|ref|ZP_03230974.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229193664|ref|ZP_04320607.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           10876]
 gi|206734598|gb|EDZ51767.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228589817|gb|EEK47693.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           10876]
          Length = 215

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|66047443|ref|YP_237284.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63258150|gb|AAY39246.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 254

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            R  L E GLLA A+Q   +  +D  +       LT RE ECL+W +EG T+ EIA  L 
Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLN 217

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  TV  ++ S M+K   K R  A+  AV   ++
Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252


>gi|302518123|ref|ZP_07270465.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|318059111|ref|ZP_07977834.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079115|ref|ZP_07986447.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333028198|ref|ZP_08456262.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|302427018|gb|EFK98833.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|332748050|gb|EGJ78491.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 223

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPERDGPVKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPAHELVQAIRVVASGEAMLAPSVTRR-LLDKYAGHLPSGEEQPPSTLQTLTE 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  +A  + +V
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVFAYESGLV 218


>gi|229073471|ref|ZP_04206602.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228709645|gb|EEL61688.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 131

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           ++      +       + Y        ++   + +L+    +I   R+ +  L+  +Q  
Sbjct: 1   MYEHDEYLMDALQAGADGYLLKDSSSNQVVAAIRMLYRGDSVI-HPRMTK-KLITYHQQK 58

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M          + ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K
Sbjct: 59  MK-----VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVK 113

Query: 232 TRSGAIAYAVRNNIV 246
           +RS A+ YAVRN +V
Sbjct: 114 SRSQAVIYAVRNQLV 128


>gi|71736210|ref|YP_276356.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482085|ref|ZP_05636126.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|71556763|gb|AAZ35974.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322567|gb|EFW78660.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330180|gb|EFW86166.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330875327|gb|EGH09476.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330987492|gb|EGH85595.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011444|gb|EGH91500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 254

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L 
Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  TV  ++ S M+K   K R  A+  AV   ++
Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252


>gi|115360781|ref|YP_777918.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|172065092|ref|YP_001815804.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115286109|gb|ABI91584.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
 gi|171997334|gb|ACB68251.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 228

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGREV 191
             RI +  +      I    L        Y A+   + +           +    T RE 
Sbjct: 113 HGRIAMWSVARSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFTTREK 172

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W ++GKT+ EIA IL IS  T+  ++ +IM K  +  ++ AI  AV   I+
Sbjct: 173 EVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227


>gi|30019588|ref|NP_831219.1| two-component response regulator yvqC [Bacillus cereus ATCC 14579]
 gi|206968465|ref|ZP_03229421.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218232967|ref|YP_002366221.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|296502111|ref|YP_003663811.1| two-component response regulator yvqC [Bacillus thuringiensis
           BMB171]
 gi|29895132|gb|AAP08420.1| Two-component response regulator yvqC [Bacillus cereus ATCC 14579]
 gi|206737385|gb|EDZ54532.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218160924|gb|ACK60916.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|296323163|gb|ADH06091.1| two-component response regulator yvqC [Bacillus thuringiensis
           BMB171]
 gi|326939160|gb|AEA15056.1| two-component response regulator yvqC [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 210

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 48  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +     D  LT RE E L  
Sbjct: 108 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 160 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|82751502|ref|YP_417243.1| two-component response regulator protein [Staphylococcus aureus
           RF122]
 gi|82657033|emb|CAI81470.1| probable two-component response regulator protein [Staphylococcus
           aureus RF122]
          Length = 207

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124
              E  L+ +   + P  ++  + +   +       +     ++   V  +  ++    +
Sbjct: 34  ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITVYIKAHYPDIKVLVLTSYVDDEHVIS 93

Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            ++   + Y     +  ++   +  +    ++I                ++F++      
Sbjct: 94  AINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKA-----------QDVFETVSQKPH 142

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+
Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202

Query: 242 RNNIV 246
            N ++
Sbjct: 203 ENKLI 207


>gi|297194044|ref|ZP_06911442.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152083|gb|EFH31522.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 253

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 135 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 192

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 193 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 250


>gi|309792258|ref|ZP_07686730.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308225799|gb|EFO79555.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 229

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDE 205
            +G   + + +  +  +AA   + F+   +          L+ RE+E L  ++ G+T+ E
Sbjct: 121 RRGDYPINEMVLALPDVAAQVLSAFRQMVIDEDTQSIFSPLSPRELEVLELVAAGRTNKE 180

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ L IS  TV N+++SI+RK A   R+ A+ YA+R   +
Sbjct: 181 IALNLDISNQTVKNHVSSILRKLAVNDRTQAVVYAMRRGWI 221


>gi|218902648|ref|YP_002450482.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218535833|gb|ACK88231.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 210

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 48  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVXVTSFLDDEKLYPVIEAGATSYLLKTSR 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 108 ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 160 IAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|297583325|ref|YP_003699105.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297141782|gb|ADH98539.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 235

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L    +     +    +L   V  +  G   + PK   +  + + E   LA    N
Sbjct: 98  VTHVLKTGASGYLLKEMDTEALIEAVKVVGNGGSYIHPK---VTHNLIKEYRRLANETGN 154

Query: 172 MFKS--YDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             +    +V + +   L T RE E L  +++GK++  I   L IS  TV N++++I++K 
Sbjct: 155 NGEIGFREVEYRRPLHLLTRRECEVLQLMTDGKSNRSIGEALYISEKTVKNHVSNILQKM 214

Query: 229 ATKTRSGAIAYAVRNN 244
               R+ A+  A++N 
Sbjct: 215 GMNDRTQAVVDAIKNG 230


>gi|229069092|ref|ZP_04202384.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185]
 gi|228714037|gb|EEL65920.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185]
          Length = 151

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + + E  +     + M +  +     D  LT RE E L  I+EGK++ EIA  L I+  T
Sbjct: 63  ETVLEPKVTGKMMSRMRQKKEQPLHDD--LTEREFEILLLIAEGKSNQEIADELFIALKT 120

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  ++++I+ K     R+ A+ YA R+ +
Sbjct: 121 VKTHVSNILNKLNVSDRTQAVIYAFRHQL 149


>gi|160882054|ref|YP_001561022.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430720|gb|ABX44283.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 213

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 30/189 (15%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT-----ELFCPVFHTLPE------- 118
           EQ +  +V ++ P  L+  + +   +    + +        ++     H   E       
Sbjct: 39  EQCIQKVVDTN-PDVLLLDINMPTMNGLQTLQELRRNNNKQKVLMLTIHNEIEYLLRAVD 97

Query: 119 -NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             +      D+    L   +  I  G   + P     L++R+                  
Sbjct: 98  IGVNGYVLKDSESSVLKKAIYTIYQGETYIEPSLTPELKERMQSPS-------------- 143

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE++ L  ++EG  + EIA  L IS  TV N++++I +K +   R+ A 
Sbjct: 144 --SSNTEILTRREIDVLKLLAEGLFNKEIAYRLSISEKTVKNHVSNIFKKISVSDRTQAA 201

Query: 238 AYAVRNNIV 246
            YA++NN V
Sbjct: 202 VYAIKNNFV 210


>gi|302521432|ref|ZP_07273774.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302430327|gb|EFL02143.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 264

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL+ +++ + ++ +        LT 
Sbjct: 146 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLSEFKSMIQRTDERRLVPAPRLTD 203

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 204 REMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 261


>gi|318056754|ref|ZP_07975477.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078616|ref|ZP_07985948.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333024919|ref|ZP_08452983.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744771|gb|EGJ75212.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 250

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL+ +++ + ++ +        LT 
Sbjct: 132 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLSEFKSMIQRTDERRLVPAPRLTD 189

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 190 REMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247


>gi|307331341|ref|ZP_07610462.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883019|gb|EFN14084.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 249

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 131 GYLLKEISTDEVSTAIRAVADGQSQISPS--MAAKLLTEFKSMIQRTDERRLVPAPRLTD 188

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 189 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 246


>gi|288960054|ref|YP_003450394.1| two-component response regulator [Azospirillum sp. B510]
 gi|288912362|dbj|BAI73850.1| two-component response regulator [Azospirillum sp. B510]
          Length = 310

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 50/145 (34%), Gaps = 20/145 (13%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
              L R      P     P  +  P G   R    T+         +    +     ++ 
Sbjct: 181 AAGLVRLRRPSPPGGAMEPFALELPDGEGVRRLEFTYLSPAGPDEYLFRLSEPTAGRQEA 240

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +    L                     LT RE E L WI+ GK + +I  ILGIS  TVN
Sbjct: 241 ILRDAL--------------------GLTAREAEVLLWIANGKPNRDIGEILGISPRTVN 280

Query: 219 NYIASIMRKTATKTRSGAIAYAVRN 243
            ++  +  K   + R+ A A A+R 
Sbjct: 281 KHLEQVFAKLGVENRASAAALAIRT 305


>gi|30575828|gb|AAP32919.1| CviR [Chromobacterium violaceum]
          Length = 233

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 18/173 (10%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           Q Q+L+ +++  +P D +    + E    ++ + R      PV     E      G + +
Sbjct: 68  QIQRLERVLNVSYPSDWLDQY-MKENYAQHDPILRIHLGQGPVM--WEERFNRAKGAEEK 124

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                     +  G+       R  +   L   G                   +  L+ R
Sbjct: 125 RFIAEATQNGMGSGITFSAASERNNIGSILSIAG---------------REPGNMPLSQR 169

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           E +   W+S GKT+ EIA IL IS  TV  ++A+++RK     R+ AI   + 
Sbjct: 170 EYDIFHWMSRGKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGMH 222


>gi|146343657|ref|YP_001208705.1| CheY/LuxR family two-component transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146196463|emb|CAL80490.1| Two-component transcriptional regulator, CheY-LuxR families
           (two-component signal transduction system)
           [Bradyrhizobium sp. ORS278]
          Length = 305

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +  +F LT RE E L+W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R+ A A
Sbjct: 236 EFSSEFGLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAA 295

Query: 239 YA 240
            A
Sbjct: 296 IA 297


>gi|75760127|ref|ZP_00740188.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218900537|ref|YP_002448948.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903890|ref|ZP_04068005.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 4222]
 gi|228968544|ref|ZP_04129531.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74492399|gb|EAO55554.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542579|gb|ACK94973.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791148|gb|EEM38763.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228855799|gb|EEN00344.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 4222]
          Length = 215

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANTLLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|332995574|gb|AEF05629.1| two-component response regulator [Alteromonas sp. SN2]
          Length = 297

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 46/107 (42%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D+    I  +  F     I    + +   L             +  ++  +T RE E L 
Sbjct: 187 DLKESAILTINCFLSPLPIQYLGIQDSYHLLKVVEPSTSKTSTYLQENLPITKRESEVLY 246

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           WIS GKTS EI+ IL IS  T N ++  I +K     ++ A A A+R
Sbjct: 247 WISFGKTSWEISQILDISPRTANKHLEQIYKKLGVDNKTSAAAIALR 293


>gi|257876663|ref|ZP_05656316.1| regulatory protein [Enterococcus casseliflavus EC20]
 gi|325571030|ref|ZP_08146602.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257810829|gb|EEV39649.1| regulatory protein [Enterococcus casseliflavus EC20]
 gi|325156115|gb|EGC68301.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 209

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 9/124 (7%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T     I   +       R++  +   ++         M +  +     
Sbjct: 94  IEAGAAGYLLKTSTAHEIAEAIRATQRGERVLEPEVTTKM---------MDRLTNRTPIL 144

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +
Sbjct: 145 HEDLTNREQEVLLLIAEGKSNQEIADSLFITLKTVKTHVSNILSKLEVEDRTQATIYAFK 204

Query: 243 NNIV 246
           + ++
Sbjct: 205 HGLI 208


>gi|257867775|ref|ZP_05647428.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257874102|ref|ZP_05653755.1| regulatory protein [Enterococcus casseliflavus EC10]
 gi|257801858|gb|EEV30761.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257808266|gb|EEV37088.1| regulatory protein [Enterococcus casseliflavus EC10]
          Length = 209

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 9/124 (7%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T     I   +       R++  +   ++         M +  +     
Sbjct: 94  IEAGAAGYLLKTSTAHEIAEAIRATQRGERVLEPEVTTKM---------MDRLTNRTPIL 144

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +
Sbjct: 145 HEDLTNREQEVLLLIAEGKSNQEIADALFITLKTVKTHVSNILSKLEVEDRTQATIYAFK 204

Query: 243 NNIV 246
           + ++
Sbjct: 205 HGLI 208


>gi|228924157|ref|ZP_04087433.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228835647|gb|EEM81012.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 214

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P     + + L    L    +  
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPD----IANALLSQTLPVEEKEE 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                DV       LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 147 EPSIVDV-------LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 199

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 200 DRTQAALYAVKNGIV 214


>gi|16800090|ref|NP_470358.1| hypothetical protein lin1021 [Listeria innocua Clip11262]
 gi|16413480|emb|CAC96252.1| lin1021 [Listeria innocua Clip11262]
 gi|313609539|gb|EFR85084.1| sensory transduction protein LiaR [Listeria monocytogenes FSL
           F2-208]
 gi|313619559|gb|EFR91226.1| sensory transduction protein LiaR [Listeria innocua FSL S4-378]
          Length = 212

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140
            DLV    +   +    +++   E    +  +  ++      ++    S    T   + I
Sbjct: 53  MDLVMD-EMDGIEATKEIMKNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198
              +   +    ++  +              M +       K+    LT RE E L  I+
Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKNLHDDLTNRENEILLLIA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|152966552|ref|YP_001362336.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151361069|gb|ABS04072.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 211

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 5/194 (2%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG         DL  E + D +V  D    ++  +  +      +V      L    
Sbjct: 22  LEVVGECGDGRAAVDLAHELRPDVVVM-DVRMPILDGIGATRLLAGPDVEAPTKVLIVTT 80

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F+             + +       A++  G+  +     ++  +   +  L+  Y + +
Sbjct: 81  FNLDEYVYEALRAGASGFLLKDARPAQLLQGIRTVAAGTSLLAPEVTRQ--LVGRYASRI 138

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                   G    LT RE++ L  I++G ++ EIA  L +S  TV  Y++ ++ K   + 
Sbjct: 139 RPPQRAQEGS--ALTPRELQVLRLIADGLSNVEIAATLSLSPETVKTYVSRLLTKLDLRD 196

Query: 233 RSGAIAYAVRNNIV 246
           R  A+ YA R+ +V
Sbjct: 197 RVQAVVYAYRHGLV 210


>gi|311900005|dbj|BAJ32413.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 223

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 13/223 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D           + E   A   L+V  +    Q+    V +  P  ++  + 
Sbjct: 1   MTIRVLLVDDQPLLRTGFRMILE---AESDLVVVGEAGDGQQALDQVRALQPDVVLMDIR 57

Query: 92  LSEKDKYYNVLQ-------RPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIG 143
           +   D      +        P ++       L E +        + +         +   
Sbjct: 58  MPRMDGVEATRRIAGPDRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDVPAEELVQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++         LL  Y   +    +        LT REVE L  ++ G ++
Sbjct: 118 IRVVADGAAMLAPSVTRR--LLDMYATKLPSGDEAPPQALTVLTEREVEVLRLVARGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 176 AEIAAELFVSETTVKTHVGHVLTKLQLRDRVQAAVYAYESGLV 218


>gi|300693708|ref|YP_003749681.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (luxr family) [Ralstonia
           solanacearum PSI07]
 gi|299075745|emb|CBJ35050.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (LuxR family) [Ralstonia
           solanacearum PSI07]
          Length = 238

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 87/248 (35%), Gaps = 27/248 (10%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           N +++    F     + SD+ A +      + +           G    L +        
Sbjct: 3   NWQEDLIDIFSEAATSTSDVFAHIEAAALALGFEHVA------YGFRAPLPLSEPKI--- 53

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTLPENITPPAGM 126
               I+ +++P         +        +      Q P     P+F   P         
Sbjct: 54  ----ILLNNYPQAWRERYLEAGYLHVDPSVAHACRSQAPVIWSDPLFQYTPALWDEAQAQ 109

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDR--------LWEIGLLAAYQANMFKSYDV 178
             R       +  + +G ML   +    L  R        +  +  +A    +     D+
Sbjct: 110 GLRVGWAQSSLDSLGVGGMLSLSRSCEPLTARELADNTRRMQWLTHMAHLALSRLLRADL 169

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               D  LTGREVE + W ++GK++ +IA IL IS+NTV+ ++ + ++K     ++ A+ 
Sbjct: 170 AGDSDDSLTGREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVV 229

Query: 239 YAVRNNIV 246
            A     +
Sbjct: 230 RAAMLGYL 237


>gi|256751296|ref|ZP_05492176.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749851|gb|EEU62875.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 205

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  IS G ++ EIA  L +S  TV N++ +I +K   K R+ A  Y ++N 
Sbjct: 141 DLTPREIEILKLISNGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKNE 200

Query: 245 IV 246
            +
Sbjct: 201 TI 202


>gi|30023441|ref|NP_835072.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228961674|ref|ZP_04123282.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229051082|ref|ZP_04194629.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH676]
 gi|229112824|ref|ZP_04242356.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-15]
 gi|229130659|ref|ZP_04259615.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-Cer4]
 gi|229147955|ref|ZP_04276296.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST24]
 gi|296505833|ref|YP_003667533.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
 gi|29899002|gb|AAP12273.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228635605|gb|EEK92094.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST24]
 gi|228652998|gb|EEL08880.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-Cer4]
 gi|228670658|gb|EEL25970.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-15]
 gi|228722293|gb|EEL73691.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH676]
 gi|228798024|gb|EEM45029.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|296326885|gb|ADH09813.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|87309494|ref|ZP_01091629.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
 gi|87287802|gb|EAQ79701.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
          Length = 210

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 65/177 (36%), Gaps = 13/177 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN-----ITPPAGMDNR 129
            +V+S  P  ++  + + E D    + + +      P+      +         A   N 
Sbjct: 41  RMVTSVNPDVVLLDIRMPEGDGLTTLGRIKLERPDLPILILSTYDNPTYVARAVALGANG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y        R+   +           RD L  +            +  ++   +  LT R
Sbjct: 101 YVLKGDPRDRLVDAIHTAANGESAWTRDELRRV-------TGALATPRLNADVEVPLTQR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++ G T+ EIA  L IS  TV  ++  I+RK     R+ A  +AVR  +V
Sbjct: 154 ESEVLRQLALGLTNKEIAQALHISYETVKEHVQHILRKVGVSDRTQAAVWAVRKGLV 210


>gi|229918078|ref|YP_002886724.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
 gi|229469507|gb|ACQ71279.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
          Length = 211

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EGK++  IA  L IS  TV  ++++I+ K     R+ A+ YA ++N+
Sbjct: 148 LTAREREILQLMAEGKSNQVIADELFISLKTVKTHVSNILTKLDVYDRTQAVVYAFQHNL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|317129803|ref|YP_004096085.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474751|gb|ADU31354.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 210

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 85/205 (41%), Gaps = 22/205 (10%)

Query: 55  YVGASHFLLVRWD-------LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQR 104
            +G S +L  + D          ++ +D +     P  ++  + +   D      N++++
Sbjct: 14  RIGVSSYLSAQKDIDVVAEANDGDEAVD-LALQLKPDIILMDLVMKRMDGIEATKNIIEK 72

Query: 105 PTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
             E    +  +  ++      ++     Y   T     I   +   +    I+  +   +
Sbjct: 73  WPEAKIIIVTSFLDDEKVYPALEAGATSYMLKTSKAKDIADAIRATYGGQSILEPEVTGK 132

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           I       + M K  + H     +LT RE+E L  ++EGK + EIA  L I+  TV  ++
Sbjct: 133 I------MSQMRKKQEAHL--HDQLTEREMEVLKLMTEGKANQEIADELYIALKTVKVHV 184

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I+ K     R+ A+ YA +NN++
Sbjct: 185 SNILNKLEVHDRTQAVIYAFKNNLI 209


>gi|229158972|ref|ZP_04287029.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           4342]
 gi|228624583|gb|EEK81353.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           4342]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +  + +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPFIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|47568528|ref|ZP_00239227.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|228988639|ref|ZP_04148725.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47554770|gb|EAL13122.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|228771090|gb|EEM19570.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +  + +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPFIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|28871673|ref|NP_794292.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854925|gb|AAO57987.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 254

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L 
Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  TV  ++ S M+K   K R  A+  AV   ++
Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252


>gi|229089048|ref|ZP_04220402.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-44]
 gi|228694270|gb|EEL47892.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-44]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 25/198 (12%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK----------YYNVLQRPTELFCP 111
           L+   +  QE  +   V    P  ++  + + E D           Y NV       F  
Sbjct: 30  LVGEANNGQEALMK--VEETQPDIVLMDLYMPEMDGIEATACIKKEYPNVKVLVLTSFSD 87

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
             H LP      +G    Y     +  ++   +   +     +  D      + ++  + 
Sbjct: 88  QAHVLPALKAGASG----YILKDVEPDQLVEAIRSAYKGNIQLHPD------IASSLLSQ 137

Query: 172 MFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                +     +     LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K 
Sbjct: 138 TLPQEEAEVPSNIHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKL 197

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A  YAV+N IV
Sbjct: 198 QLSDRTQAALYAVKNGIV 215


>gi|229176087|ref|ZP_04303581.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3]
 gi|228607431|gb|EEK64759.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANTLLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|213966697|ref|ZP_03394848.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato T1]
 gi|301383210|ref|ZP_07231628.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059053|ref|ZP_07250594.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato K40]
 gi|302133729|ref|ZP_07259719.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928547|gb|EEB62091.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato T1]
 gi|331018431|gb|EGH98487.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 254

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L 
Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  TV  ++ S M+K   K R  A+  AV   ++
Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252


>gi|261407693|ref|YP_003243934.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261284156|gb|ACX66127.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 220

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 11/180 (6%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            L  +V  D    ++  +      +    L     +    F      +         Y  
Sbjct: 46  LLPDVVLMDLNMPVLNGID--TTARLKKELPHIKVIVLTSFVDYDHVLPAIRAGARGYLL 103

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------L 186
              +   +  G+  +F     +  D     GLL  +  +     + +     E      L
Sbjct: 104 KDIEPEELVAGIRRVFQGQVELHPDA---AGLLMTHVTSPAGEDEANGSSHQEAAQLDKL 160

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I+ G  + EI+  L I+  TV  +++ ++ K     R+ A  YA+++ IV
Sbjct: 161 TRREQEVLQLIASGMNNREISEALYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGIV 220


>gi|152994993|ref|YP_001339828.1| response regulator receiver protein [Marinomonas sp. MWYL1]
 gi|150835917|gb|ABR69893.1| response regulator receiver protein [Marinomonas sp. MWYL1]
          Length = 304

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 41/79 (51%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +     +      K+ +LT RE E L WI+ GKT+ EIA IL +S  TVN ++  
Sbjct: 220 VLLRLEDGDKPTGPALLKKELDLTDRESEVLHWIANGKTNREIAEILEMSPRTVNKHLEQ 279

Query: 224 IMRKTATKTRSGAIAYAVR 242
           I  K   + R+ A   A+R
Sbjct: 280 IFPKLGVENRTSAAGVALR 298


>gi|304406459|ref|ZP_07388115.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344517|gb|EFM10355.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 220

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y     +   +   +  ++     +  D    +  + A   +     D    +
Sbjct: 95  IRAGAKGYLLKDIEPDELVRAIRRVWQGQVELHPDAASRLMNILAEPESNRDDPDEAAKR 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE E L  I+ G ++ EI   L I+  TV  +++ ++ K     R+ A  +AV+
Sbjct: 155 LSELTKREHEVLRLIATGMSNKEIGDSLSITEKTVKTHVSHVLEKLGFADRTQAAIFAVK 214

Query: 243 NNI 245
             I
Sbjct: 215 QGI 217


>gi|21221451|ref|NP_627230.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787364|ref|ZP_05525795.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289771263|ref|ZP_06530641.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799203|emb|CAB90919.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701462|gb|EFD68891.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 252

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 134 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 191

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 192 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 249


>gi|16265270|ref|NP_438062.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|15141410|emb|CAC49922.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
          Length = 309

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +     D                     + +   AG    +     +    R G   L
Sbjct: 146 RHLLAVRGDGTVRWSTPQATRLVNAATGSDDGLAFVAGRIAEWMRERENSPGERQGTFTL 205

Query: 148 FPKGRIILR----DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
               +  L+      +     L    A    S D    + F LT RE E L WI++GK++
Sbjct: 206 QRASQTGLQISYLGAIGANEYLFRLTAENGMSDDETLRQHFRLTQRESEVLLWIAKGKSN 265

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR--NNI 245
            +I  ILG+S  TV  ++  I  K   + R+ A   A +  + I
Sbjct: 266 RDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKATQVLHGI 309


>gi|307943595|ref|ZP_07658939.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307773225|gb|EFO32442.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 232

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGK 201
           GL+        +    +  + L   Y ++ F +          +LT REVECL W S G 
Sbjct: 127 GLIAFIGIPSDLSGVIINLLHLAGLYTSSRFAALLFEEATNPTDLTPREVECLKWSSNGL 186

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS EIA  LGISR+T + Y+    +K   + R+ A+  A R  ++
Sbjct: 187 TSSEIAEKLGISRHTADWYLKEATQKLGAQNRTHAVMIAYRKGLI 231


>gi|121663597|emb|CAM12356.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae]
          Length = 349

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 8/116 (6%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGR 189
            AR   GL+ +  +   +    +  + L A + AN+  S         +       LT R
Sbjct: 120 AARGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244
           E E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+     R+ 
Sbjct: 180 EREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVGRQGDRHG 235


>gi|159898087|ref|YP_001544334.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891126|gb|ABX04206.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 257

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 13/183 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           ++S   P  ++  + L   D   +   ++R       V  ++ E+            +  
Sbjct: 45  LISEHEPDVVLTDLNLPNMDGLEFTRTIRRQYPNIGVVMLSVYESDEHAFNALRAGAAAY 104

Query: 135 FDVA---RIRIGLMLLFPKGRIILRDRLWEIGLLA--------AYQANMFKSYDVHWGKD 183
           +      +    ++    +G  ++ D ++E   +A          Q  +    D+     
Sbjct: 105 YSKEISPKTLATVLRRVARGEYVINDVMFEDPRVADRILTQFRGLQTGIVAEPDLDISLF 164

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L  I+ G T+ +IA  L IS  TV N+I+SI+RK +   R+ A+ YA+R 
Sbjct: 165 SPLSDREIEVLEHIASGATNKDIADALKISTQTVKNHISSILRKLSLNDRTQAVLYALRR 224

Query: 244 NIV 246
             +
Sbjct: 225 GWI 227


>gi|254387068|ref|ZP_05002344.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345889|gb|EDX26855.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 216

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 16/170 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D     L+R  EL  P        F      +         Y     
Sbjct: 54  PDVILMDIKMPGTDG-IEALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDI 112

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++  +    + LL   Q +   S      +   LT RE E L+
Sbjct: 113 DPDALAGAIRSVHAGHVLLQPE--VAVALLT--QDDQGPSS----SRGGALTDREREVLS 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 165 HIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGI 214


>gi|182438321|ref|YP_001826040.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778972|ref|ZP_08238237.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466837|dbj|BAG21357.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326659305|gb|EGE44151.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 251

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 133 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTE 190

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 191 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 248


>gi|114565755|ref|YP_752909.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336690|gb|ABI67538.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 213

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 87/215 (40%), Gaps = 10/215 (4%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           AR++  D  V     +  L E       + V  ++   Q   +I   + P  ++  + + 
Sbjct: 4   ARVVIADDHVLVREGLRKLLE---LDSNIKVIDEVGDGQGAINIARKEKPDIIIMDVNMP 60

Query: 94  EKDK--YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
             D      V++R       +  T+ E       +     +      +   G  L+    
Sbjct: 61  GTDGIVATRVIKRELPSVRIIALTVYEGEEVVDMVKAGASAYIL---KDVAGSELVDTIH 117

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R++  + +    +       + +S +     +  LT RE + LT + +G T+ E+A ++ 
Sbjct: 118 RVMNGEVVIYPRVANRLVRELRQSEN--RKSEIRLTKREKDVLTLLVKGNTNKEMAEVMF 175

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV N++ SI RK   K R+ A  YA++N IV
Sbjct: 176 ISEKTVKNHLTSIFRKLGVKDRTHAAIYALKNRIV 210


>gi|326793450|ref|YP_004311270.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544214|gb|ADZ89434.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 306

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L WI+ GKT+ EIA IL +S  TVN ++  I  K   + R+ A   A+R
Sbjct: 242 ELNLTDRESEVLRWIANGKTNREIAEILEMSPRTVNKHLEQIFPKLGVENRTAAAGVALR 301


>gi|297159907|gb|ADI09619.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 252

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 134 GYLLKEISTDEVSTAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 191

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 192 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 249


>gi|320010465|gb|ADW05315.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 250

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 132 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTE 189

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 190 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247


>gi|254471852|ref|ZP_05085253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp.
           JE062]
 gi|211959054|gb|EEA94253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp.
           JE062]
          Length = 254

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 26/194 (13%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF--C 110
            E+  + H+       F++  +D ++S        R +     D       +    F   
Sbjct: 75  VEHYNSHHY------YFKDPGMDHLLSG-------RKVDQLWTDYTVRPTSKVDSDFFND 121

Query: 111 PVFHTLPENITPPAGMDNRYCS--LTFDV-ARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
                L   +T P    N++     +F    R ++G          +L+         A 
Sbjct: 122 VRSAGLKFGVTIPLECSNKHLVGGASFASCERTQLGFDAQMTSNYPVLKG--------AV 173

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +  + +        + F  T RE ECL W++ G+ + EIA IL +S  TV ++I    +K
Sbjct: 174 HLFHTYAQEPETLSEFFGFTPREHECLLWLTAGRANKEIAHILNLSEKTVEHHIKRACKK 233

Query: 228 TATKTRSGAIAYAV 241
                R+ A+A A+
Sbjct: 234 LRVTNRTHAVARAM 247


>gi|229035051|ref|ZP_04188998.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1271]
 gi|228728236|gb|EEL79265.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1271]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANTLLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|307316768|ref|ZP_07596210.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306897390|gb|EFN28134.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
          Length = 307

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +     D                     + +   AG    +     +    R G   L
Sbjct: 144 RHLLAVRGDGTVRWSTPQATRLVNAATGSDDGLAFVAGRIAEWMRERENSPGERQGTFTL 203

Query: 148 FPKGRIILR----DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
               +  L+      +     L    A    S D    + F LT RE E L WI++GK++
Sbjct: 204 QRASQTGLQISYLGAIGANEYLFRLTAENGMSDDETLRQHFRLTQRESEVLLWIAKGKSN 263

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR--NNI 245
            +I  ILG+S  TV  ++  I  K   + R+ A   A +  + I
Sbjct: 264 RDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKATQVLHGI 307


>gi|37523666|ref|NP_927043.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214671|dbj|BAC92038.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 225

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 14/225 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYV---GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             +  ++ +D  + +   +  L  +    G + F +V      +Q L  ++ S  P  ++
Sbjct: 4   QTILPILLVDDELRFRQGLRTLLSFYSATGTTTFEIVGEAATVDQALT-LIHSQRPALVL 62

Query: 88  RCMALSEKDKYYNVLQRPTELF---CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             + L++ D    + +     F     V     E+      M +      F         
Sbjct: 63  LDLELAQGDGVELLTRLRGSAFAGKVLVLSAHQEDDWVFRAMQSGASGYVFKTHLAAQLC 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGK 201
             +      +LRD ++    +A     +F     + V       LT RE E L W+  G 
Sbjct: 123 AAITT----VLRDEIYLPPEVATQFFRLFHYYAGHTVQSRSRIHLTEREQEVLHWLVRGA 178

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++DEIA  L I+  TV  ++++I  K    +R+ AI  A++  +V
Sbjct: 179 SNDEIARNLYITIATVKAHLSAIFEKLQVTSRTQAIVAALKLGLV 223


>gi|255598987|ref|XP_002537125.1| conserved hypothetical protein [Ricinus communis]
 gi|223517394|gb|EEF25258.1| conserved hypothetical protein [Ricinus communis]
          Length = 277

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S     G+   L+ RE+E L W+  GKT+ EI  I+ +S  T+ N++ +I+RK   + RS
Sbjct: 202 STTARNGRIKPLSKRELEVLEWLQAGKTNWEIGNIMQVSPLTIKNHVQNILRKLDVENRS 261

Query: 235 GAIAYAVRNNIV 246
            A + A++  ++
Sbjct: 262 QAASKALKLGLI 273


>gi|170752129|ref|YP_001758389.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658651|gb|ACB27706.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 242

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 14/236 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLD-SIVSSD 81
           HL     +L  +            +       G S+ +  +V      +++    +++S 
Sbjct: 6   HLDRTFSVLRDLERAATPDEIARLLVEAFSRYGVSYIMAGIVPDPGLPKRRHAGFVLAST 65

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---------NRYCS 132
            P    R         +   ++R      P         TP AG               +
Sbjct: 66  MPEGWARRYVTQGYALHDPTVRRLCTTATPFDWNAVLPDTPTAGRVMNEAGEFGIRAGIT 125

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGRE 190
           + F       G + +  +   I       + L+A Y        +          L+ RE
Sbjct: 126 VPFVTLDGEPGGISVSGERIEIDPAERVAVNLVATYAVGQLLLMNSRPAAPAPARLSPRE 185

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W +EGKT  EI +++GI+   V+ ++ S   K  T  R+  +A A+R+ ++
Sbjct: 186 REALQWAAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGLI 241


>gi|330888704|gb|EGH21365.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 254

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L 
Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADHLN 217

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  TV  ++ S M+K   K R  A+  AV   ++
Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252


>gi|313895153|ref|ZP_07828710.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529859|ref|ZP_08030936.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas artemidis F0399]
 gi|312976048|gb|EFR41506.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137877|gb|EFW29782.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas artemidis F0399]
          Length = 223

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     L   +  +  G   ++PK    L +RL+    +    + 
Sbjct: 91  VLELLKNGALGYLLKDVEPNVLIKAIHMVNEGNPFVYPK----LAERLFGSTAVYGDVSR 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M K       +   LT RE++ L  I++G ++ +I   LG+S  TV N++ SI  K    
Sbjct: 147 MAKEI-WDESRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSIFHKLKVN 205

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+ Y ++N IV
Sbjct: 206 DRTQALVYVLKNKIV 220


>gi|109896689|ref|YP_659944.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109698970|gb|ABG38890.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica
           T6c]
          Length = 248

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 12/180 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           EQ+ D +V   + F+    +     DK        +     VF           G+    
Sbjct: 73  EQQNDPVVK--YIFEKQSPI---RWDKLVEYQDFSSTKGLLVFEKA-AAYGLYNGLSIPI 126

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKDFEL 186
            S + ++A   + +       R++   +++       L   Y      + D    +  EL
Sbjct: 127 RSTSENIAVFSVAIDERSDANRVLDNAQMFCHTFATHLFERYVLLEISASDETDRR--EL 184

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+ECL W  EGKT+ EI+ I+ +S  TV  ++ +   K     R  A+A A++  I+
Sbjct: 185 TKRELECLFWACEGKTAWEISQIINVSERTVLFHLGNSNTKLGAINRQHAVALAIKKGII 244


>gi|310686584|gb|ADP02958.1| LuxR [Cloning vector pLR3]
 gi|310686589|gb|ADP02962.1| LuxR [Cloning vector pLR4]
          Length = 269

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 17/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++            +  +T+ V   ++LL         K D  +  ++P    +   
Sbjct: 31  IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 90

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140
            +   KY  ++        P+   + EN        N              S     A  
Sbjct: 91  DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANN 150

Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
             G++      +    D L       I L+     + ++  ++   K + +LT RE ECL
Sbjct: 151 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 210

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W  EGK+S +I+ ILG S+ TV  ++ +   K  T  R  +I+ A+    +
Sbjct: 211 AWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 262


>gi|269128235|ref|YP_003301605.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313193|gb|ACY99567.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 253

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
             +         + Y      +  +   +  +     +I         L+  + A   +S
Sbjct: 121 DTDLFEAIKAGASGYLLKEISIDEVPQAVRAVHGGQSLISPS--MASKLITEFAALAKRS 178

Query: 176 YD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            +        +LT RE+E L  ++ G  + EIA  L IS NTV N++ +I+ K    +R 
Sbjct: 179 EERQQQVPAPKLTEREMEVLRLVARGLGNREIAKELFISENTVKNHVRNILEKLQLHSRM 238

Query: 235 GAIAYAVRNNIV 246
            A+ YAVR  ++
Sbjct: 239 EAVVYAVREKLL 250


>gi|317047630|ref|YP_004115278.1| LuxR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949247|gb|ADU68722.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 240

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 17/233 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHF--LLVRWDLFQEQKLDSIVSSDWPFDL 86
           R +   +   +   +     +    E +G  +F  L+     F   ++   + S +P D 
Sbjct: 10  RGETEIQFQAVTAVLQLKALLQKHIETLGFDYFAFLIQHPVPFTRPRI--FLFSTYPEDW 67

Query: 87  VRCMALSEKDKYYNVL---QRP---TELFCPVFHTLPENITPPA--GMDNRYCSLTFDVA 138
           V+            VL   QRP    E    +F             G+ + +        
Sbjct: 68  VKHYESENYYAVDPVLLLCQRPGHGVEWTRDLFTGAGNLWAEANAYGLMSGFSCSAMASN 127

Query: 139 RIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKS--YDVHWGKDFELTGREVEC 193
           R    L +   +       R+    ++  LA     + +    +       + + RE+E 
Sbjct: 128 RAIGILSIASGQQSKTQHLRVELEVKLHFLAELSLRVLERLNDNAMVVLSNDFSQRELEI 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W +EGKTS EI++IL IS +TVN +  ++ ++     ++    YA    ++
Sbjct: 188 LKWTAEGKTSAEISLILAISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240


>gi|228475909|ref|ZP_04060619.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           SK119]
 gi|314936099|ref|ZP_07843446.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
 gi|228270064|gb|EEK11534.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           SK119]
 gi|313654718|gb|EFS18463.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
          Length = 207

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L+ RE+E L  + +GKT+ +IA  L +S  TV  +++ I  K     R+ A  YA+ 
Sbjct: 144 NNKLSKREMEVLKEMVKGKTNKDIAKSLFVSEKTVKTHVSHIFNKLQVSDRTQAAIYAIE 203

Query: 243 NNIV 246
           N ++
Sbjct: 204 NKLI 207


>gi|155233|gb|AAA27541.1| luxR protein [Aliivibrio fischeri]
 gi|455385|gb|AAA27551.1| regulatory protein [Aliivibrio fischeri]
 gi|225902|prf||1403259A luxR gene
          Length = 250

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 17/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++            +  +T+ V   ++LL         K D  +  ++P    +   
Sbjct: 12  IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 71

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140
            +   KY  ++        P+   + EN        N              S     A  
Sbjct: 72  DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANN 131

Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
             G++      +    D L       I L+     + ++  ++   K + +LT RE ECL
Sbjct: 132 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 191

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W  EGK+S +I+ ILG S+ TV  ++ +   K  T  R  +I+ A+    +
Sbjct: 192 AWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243


>gi|328882798|emb|CCA56037.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 250

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 132 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 189

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 190 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247


>gi|159901957|gb|ABX10688.1| two-component system response regulator [uncultured planctomycete
           8FN]
          Length = 210

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +  +    +  LT RE E L  ++ GKT+ EIA  L IS  TV  ++ +I+RK    
Sbjct: 136 ALATPRLDLDVEVPLTAREAEVLKHLTSGKTNKEIANSLTISYETVKEHVQNILRKIGVT 195

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A R  IV
Sbjct: 196 DRTQAAVWAFRKGIV 210


>gi|283471119|emb|CAQ50330.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 207

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 71/185 (38%), Gaps = 17/185 (9%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124
              E  L+ +   + P  ++  + +   +       +      +   V  +  ++    +
Sbjct: 34  ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPHIKVLVLTSYVDDEHVIS 93

Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            ++   + Y     +  ++   +  +    ++I                ++F++      
Sbjct: 94  AINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKA-----------QDVFETVSQKPH 142

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+
Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202

Query: 242 RNNIV 246
            N ++
Sbjct: 203 ENKLI 207


>gi|21283518|ref|NP_646606.1| hypothetical protein MW1789 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484090|ref|YP_041314.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486665|ref|YP_043886.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650637|ref|YP_186730.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161726|ref|YP_494481.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195671|ref|YP_500477.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221952|ref|YP_001332774.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510065|ref|YP_001575724.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142169|ref|ZP_03566662.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253735272|ref|ZP_04869437.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257425960|ref|ZP_05602384.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428625|ref|ZP_05605023.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431262|ref|ZP_05607639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433942|ref|ZP_05610300.1| response regulator [Staphylococcus aureus subsp. aureus E1410]
 gi|257436858|ref|ZP_05612902.1| response regulator [Staphylococcus aureus subsp. aureus M876]
 gi|258452662|ref|ZP_05700661.1| DNA-binding response regulator [Staphylococcus aureus A5948]
 gi|262050140|ref|ZP_06022994.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30]
 gi|262052678|ref|ZP_06024870.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3]
 gi|282904423|ref|ZP_06312311.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906246|ref|ZP_06314101.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282909165|ref|ZP_06316983.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911471|ref|ZP_06319273.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914643|ref|ZP_06322429.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282917116|ref|ZP_06324874.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|282919609|ref|ZP_06327344.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924179|ref|ZP_06331854.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A9765]
 gi|282924989|ref|ZP_06332655.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|283770932|ref|ZP_06343824.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|283958601|ref|ZP_06376052.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|284024894|ref|ZP_06379292.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|293503715|ref|ZP_06667562.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510736|ref|ZP_06669441.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|293537278|ref|ZP_06671958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|294850276|ref|ZP_06791011.1| two-component system [Staphylococcus aureus A9754]
 gi|295428426|ref|ZP_06821055.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297207436|ref|ZP_06923873.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297590607|ref|ZP_06949245.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300911520|ref|ZP_07128965.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380550|ref|ZP_07363225.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|21204959|dbj|BAB95654.1| MW1789 [Staphylococcus aureus subsp. aureus MW2]
 gi|49242219|emb|CAG40926.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49245108|emb|CAG43574.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284823|gb|AAW36917.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus COL]
 gi|87127700|gb|ABD22214.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203229|gb|ABD31039.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150374752|dbj|BAF68012.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368874|gb|ABX29845.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726679|gb|EES95408.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271654|gb|EEV03800.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275466|gb|EEV06953.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278210|gb|EEV08858.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282035|gb|EEV12172.1| response regulator [Staphylococcus aureus subsp. aureus E1410]
 gi|257284209|gb|EEV14332.1| response regulator [Staphylococcus aureus subsp. aureus M876]
 gi|257859637|gb|EEV82486.1| DNA-binding response regulator [Staphylococcus aureus A5948]
 gi|259159427|gb|EEW44479.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3]
 gi|259161765|gb|EEW46353.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30]
 gi|282313355|gb|EFB43751.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|282317419|gb|EFB47793.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|282319603|gb|EFB49955.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|282321824|gb|EFB52149.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325166|gb|EFB55476.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327429|gb|EFB57724.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331538|gb|EFB61052.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282592974|gb|EFB97976.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A9765]
 gi|282596041|gb|EFC01005.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|283461079|gb|EFC08169.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|283790750|gb|EFC29567.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920123|gb|EFD97191.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095381|gb|EFE25646.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466627|gb|EFF09148.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|294822892|gb|EFG39326.1| two-component system [Staphylococcus aureus A9754]
 gi|295127826|gb|EFG57463.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887899|gb|EFH26795.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297575493|gb|EFH94209.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300887152|gb|EFK82352.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302333513|gb|ADL23706.1| two-component response regulator receiver protein [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|302751657|gb|ADL65834.1| two-component response regulator receiver protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304340879|gb|EFM06804.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312437687|gb|ADQ76758.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315195759|gb|EFU26146.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
 gi|315196803|gb|EFU27147.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141302|gb|EFW33147.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143570|gb|EFW35350.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323438857|gb|EGA96594.1| two-component response regulator protein [Staphylococcus aureus
           O11]
 gi|323441701|gb|EGA99346.1| two-component response regulator protein [Staphylococcus aureus
           O46]
 gi|329314524|gb|AEB88937.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329729501|gb|EGG65903.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329732948|gb|EGG69292.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 207

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124
              E  L+ +   + P  ++  + +   +       +     ++   V  +  ++    +
Sbjct: 34  ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPDIKVLVLTSYVDDEHVIS 93

Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            ++   + Y     +  ++   +  +    ++I                ++F++      
Sbjct: 94  AINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKA-----------QDVFETVSQKPH 142

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+
Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202

Query: 242 RNNIV 246
            N ++
Sbjct: 203 ENKLI 207


>gi|302337759|ref|YP_003802965.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634944|gb|ADK80371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 886

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 93/254 (36%), Gaps = 23/254 (9%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
            F++  ++ ++      R   +     R   L  +  +    S     +    +V +   
Sbjct: 646 EFDVSTIDDLMVELVRVRLLLLRGDSRRLSPLPSLHGILGDRSVDRYYH----FVESRKI 701

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           L+ R +L +    D +  SD   +L+       ++K    L     L         E + 
Sbjct: 702 LMARLELHRGGFDDLLSVSD---ELINAGRKLGRNKSVIELSILRSLAL-------EGMG 751

Query: 122 PPAGMDN---RYCSLTFDVARIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMF---- 173
            P   +N         ++   +R+ +    P   I+ R ++      L  Y   +     
Sbjct: 752 KPEDAENVLLFILPEAYEAGFLRLFVDEGPPLAFILCRLEKKVTNSFLREYIGKILTLIE 811

Query: 174 -KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K+ D    K   L+ RE+  L  ++ G T+ EIA  L IS  TV  +  +I +K   K 
Sbjct: 812 KKASDAGSCKPVTLSNRELMVLRLLARGYTNKEIAEELFISVRTVKWHTVNIYKKLGVKN 871

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+  A  + I+
Sbjct: 872 RTEAVVKANISGII 885


>gi|290959922|ref|YP_003491104.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260649448|emb|CBG72563.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 249

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 131 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 188

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 189 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 246


>gi|59940155|gb|AAX12616.1| LuxR-type transcriptional regulator [Aeromonas sp. 13m]
          Length = 260

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 84/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G++      R    D L E   + ++ +N      +   +           LT R
Sbjct: 128 AAGENGILSFITAERA-SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL   SEGKTS +IA IL I+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 187 ETECLFCASEGKTSGDIACILRITERTVNYHLNHVTRKTVSMNRYQAIAKGVSSGIL 243


>gi|320159841|ref|YP_004173065.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319993694|dbj|BAJ62465.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 214

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 17/218 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++ +D    +   + +L E      F +V      E+ L  I        LV  + +  
Sbjct: 6   RLVVVDDHALFRRGLISLLE--EMPEFDVVGEASDGEEALKVIAQRHPDIALV-DVNMPR 62

Query: 95  KDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            D    V     +      L   +     + I       N Y     +   +R  L+ + 
Sbjct: 63  MDGIALVQALRRQKSALKVLMLTISQEDQDLIGAIRAGANGYILKNTEPEDLRKALLNIA 122

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++  + +    +L   Q     S          L+ RE+E L  ++EG T+ +IA 
Sbjct: 123 EGKGVLSPEVV--PPVLGVMQRGTLDSSPQL------LSDRELEVLQCLAEGLTTQQIAS 174

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS NTV  +I  I+ K     R+ A+  A +  I+
Sbjct: 175 RLFISENTVKTHIRHILDKLEASNRTEAVGKATQLGIL 212


>gi|253732505|ref|ZP_04866670.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253723786|gb|EES92515.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 207

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124
              E  L+ +   + P  ++  + +   +       +     ++   V  +  ++    +
Sbjct: 34  ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPDIKVLVLTSYVDDEHVIS 93

Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            ++   + Y     +  ++   +  +    ++I                ++F++      
Sbjct: 94  AINKGADGYEMKDIEPQQLIETIRRVMNGEKMIHPKA-----------QDVFETVSQKPH 142

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+
Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202

Query: 242 RNNIV 246
            N ++
Sbjct: 203 ENKLI 207


>gi|222153503|ref|YP_002562680.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222114316|emb|CAR42990.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 213

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 13/175 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN--ITPPAGMDNRYCSL 133
            +     P  LV  + + E       L+        +    PE   +   + +DN     
Sbjct: 43  ELALELKPDVLVMDLVMPELGGVEATLE--------ILKEWPEAKILVLTSYLDNEKIYP 94

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREV 191
             D    +  ++       I+   +    G LA         K++D       ELT RE 
Sbjct: 95  VIDAG-AKGYMLKTSSAAEILNAIQKVAKGQLAIETEVDKKIKAHDRKPNLHDELTAREY 153

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 154 DILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHHLV 208


>gi|302544912|ref|ZP_07297254.1| nitrate/nitrite response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462530|gb|EFL25623.1| nitrate/nitrite response regulator [Streptomyces himastatinicus
           ATCC 53653]
          Length = 249

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 131 GYLLKEISTDEVSTAIRAVADGQSQISPS--MAAKLLTEFKSMIQRTDERRLVPAPRLTD 188

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 189 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 246


>gi|110680752|ref|YP_683759.1| two-component response regulator, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456868|gb|ABG33073.1| two-component response regulator, putative [Roseobacter
           denitrificans OCh 114]
          Length = 304

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                 +    ++    L  PVF + L   I  P     R+    F +  +  G     P
Sbjct: 163 TALRVLRDTENVEPQQILGGPVFKSWLDSCIQLPTSQTRRFSCEDFTLDFLGGG-----P 217

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G ++L+          A  +NM  S   +    F+LT RE E L W+S GKT+ +IA I
Sbjct: 218 SGELLLQ---------IARTSNMRPS--TYLETAFDLTPREAEVLYWLSMGKTNRDIAQI 266

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L +S  T+N ++  + +K     R+ A   A R
Sbjct: 267 LSLSSRTINKHLEQVFQKMGVDNRTAAAVAADR 299


>gi|239941686|ref|ZP_04693623.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988145|ref|ZP_04708809.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445128|ref|ZP_06584518.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348075|gb|EFE74979.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 251

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 133 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTE 190

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 191 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 248


>gi|315641236|ref|ZP_07896313.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315483003|gb|EFU73522.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 209

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y   T     I   +  ++  GR++      ++           ++ + ++  
Sbjct: 94  IEAGASGYLLKTSAAHDIAQAIRTIYQGGRVVEPQVSNKL---------RNETSNRNFHL 144

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE E L  IS GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +
Sbjct: 145 HDELTNREKEVLQLISNGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQAAIYAFK 204

Query: 243 NNIV 246
           +  +
Sbjct: 205 HGYI 208


>gi|148252241|ref|YP_001236826.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146404414|gb|ABQ32920.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 305

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +  +F LT RE E L+W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R+ A A
Sbjct: 236 EFSSEFGLTVRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAA 295

Query: 239 YA 240
            A
Sbjct: 296 IA 297


>gi|328542032|ref|YP_004302141.1| two component transcriptional regulator, LuxR family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326411782|gb|ADZ68845.1| two component transcriptional regulator, LuxR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 305

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            + D    + F LT RE E L WI++GK + +I  ILG+S  TVN ++  I  K   + R
Sbjct: 232 PNQDETLRRHFGLTAREAEVLLWIAKGKANRDIGDILGLSPRTVNKHLEQIYAKLGVENR 291

Query: 234 SGAIAYAVR 242
           + A   A +
Sbjct: 292 ASAAVRAAQ 300


>gi|116694039|ref|YP_728250.1| response regulator [Ralstonia eutropha H16]
 gi|113528538|emb|CAJ94885.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 297

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + W++ GKT+ +IA ILG+S  TVN ++  I  K   +TR+ A+A A R N+
Sbjct: 236 LTLREAEVMAWVARGKTNRDIADILGMSPRTVNKHLEHIYEKLGVETRTAAVA-ATRRNL 294


>gi|172056637|ref|YP_001813097.1| two component LuxR family transcriptional regulator
           [Exiguobacterium sibiricum 255-15]
 gi|171989158|gb|ACB60080.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sibiricum 255-15]
          Length = 209

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              +        +    H   D  LT RE E L  ++ G  + EIA  L IS  TV  ++
Sbjct: 126 AAQVTGKMMERLRKPTSHLHDD--LTEREQEVLQLMARGMANQEIADELFISLKTVKTHV 183

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I+ K     R+ A+ YA ++NIV
Sbjct: 184 SNILSKLDVVDRTQAVVYAFKHNIV 208


>gi|30265432|ref|NP_847809.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530989|ref|YP_022338.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188248|ref|YP_031501.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481286|ref|YP_039401.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145220|ref|YP_086677.1| response regulator [Bacillus cereus E33L]
 gi|65317392|ref|ZP_00390351.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|118480442|ref|YP_897593.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871317|ref|ZP_02215966.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635732|ref|ZP_02394042.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640431|ref|ZP_02398695.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688212|ref|ZP_02879423.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708051|ref|ZP_02898499.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651955|ref|ZP_02934538.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568889|ref|ZP_03021791.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036150|ref|ZP_03103550.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041030|ref|ZP_03108327.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196045422|ref|ZP_03112653.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218906592|ref|YP_002454426.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225867394|ref|YP_002752772.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227818179|ref|YP_002818188.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228918025|ref|ZP_04081555.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228930420|ref|ZP_04093421.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936698|ref|ZP_04099489.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228949137|ref|ZP_04111407.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124916|ref|ZP_04254092.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           95/8201]
 gi|229187641|ref|ZP_04314778.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC
           6E1]
 gi|229603380|ref|YP_002869624.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687146|ref|ZP_05151004.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724071|ref|ZP_05185856.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735533|ref|ZP_05193240.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742202|ref|ZP_05199889.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755887|ref|ZP_05207919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761599|ref|ZP_05213619.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301056878|ref|YP_003795089.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30260110|gb|AAP29295.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47506137|gb|AAT34813.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182175|gb|AAT57551.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49332842|gb|AAT63488.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978689|gb|AAU20239.1| response regulator [Bacillus cereus E33L]
 gi|118419667|gb|ABK88086.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164712984|gb|EDR18512.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511651|gb|EDR87033.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528841|gb|EDR91598.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127024|gb|EDS95903.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667905|gb|EDT18657.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082659|gb|EDT67723.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190559956|gb|EDV13939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991317|gb|EDX55285.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196023629|gb|EDX62305.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028198|gb|EDX66808.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218537324|gb|ACK89722.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225787376|gb|ACO27593.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227004175|gb|ACP13918.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228595795|gb|EEK53478.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC
           6E1]
 gi|228658546|gb|EEL14210.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           95/8201]
 gi|228810578|gb|EEM56929.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228822907|gb|EEM68748.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829267|gb|EEM74903.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228841613|gb|EEM86727.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229267788|gb|ACQ49425.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300379047|gb|ADK07951.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 215

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|332707622|ref|ZP_08427652.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332353630|gb|EGJ33140.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 216

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 76/222 (34%), Gaps = 29/222 (13%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ R++ +D        + AL + +     ++   +  Q     S+V +  P  ++  + 
Sbjct: 1   MMIRILLVDDQSLIRRGLKALLK-LEEDLQVVGEAENGQ--TAISLVKTLQPDVILMDIR 57

Query: 92  LSEKDKYYNVLQRPTE---LFCPVFHTLPE----------NITPPAGMDNRYCSLTFDVA 138
           +   D      +   +       V  T  +                  D     L   + 
Sbjct: 58  MPVMDGVAATREICQQFPDTKVLVLTTFDDDQYVTQAIQCGAAGYLLKDTPPEELAQSIR 117

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            ++ G   L P     +  ++ +             S    W    ELT RE E L  I+
Sbjct: 118 AVQKGYTQLGPGIGRKVAAQMRDP----------TPSPPPGWD---ELTPREQEILRLIA 164

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            G ++ EIA  L IS  TV N++  I+ +   + R+ A   A
Sbjct: 165 TGASNREIAQTLYISEKTVKNHVTHILSRLNVRDRTQAAILA 206


>gi|302554629|ref|ZP_07306971.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472247|gb|EFL35340.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 235

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L          D     +   V  +  G   L P  +  L +RL E G         
Sbjct: 107 FPALAAGARGYLTKDAGGEVIVRAVHSVLSGEAGLSPSVQRRLLERLAEGG--------- 157

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE E L  I++G ++ EIA  L +S  TV  +I ++  KT  K 
Sbjct: 158 -TRPPAPPEVPDGLTARETEVLVLIADGLSNQEIARRLHVSTATVKTHINNLFTKTGLKD 216

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA    +V
Sbjct: 217 RAQAVRYAYGKGLV 230


>gi|324329359|gb|ADY24619.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 215

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|163943094|ref|YP_001647978.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229014574|ref|ZP_04171690.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
 gi|229065062|ref|ZP_04200357.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH603]
 gi|229136229|ref|ZP_04264978.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST196]
 gi|229170116|ref|ZP_04297805.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH621]
 gi|163865291|gb|ABY46350.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
 gi|228613347|gb|EEK70483.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH621]
 gi|228647209|gb|EEL03295.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST196]
 gi|228716204|gb|EEL67920.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH603]
 gi|228746726|gb|EEL96613.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
          Length = 215

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
           F    H LP      +G    Y     +  ++   +   +     +  D      LL+  
Sbjct: 85  FSDQAHVLPALKAGASG----YILKDIEPDQLVEAIRSAYKGNIQLHPD--IANALLSQT 138

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                K  +     D  LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K 
Sbjct: 139 LPQEEKEEEPSVQVDV-LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHMSSILSKL 197

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A  YAV+N IV
Sbjct: 198 HLSDRTQAALYAVKNGIV 215


>gi|239908483|ref|YP_002955225.1| LuxR family transcriptional regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798350|dbj|BAH77339.1| LuxR family transcriptional regulator [Desulfovibrio magneticus
           RS-1]
          Length = 257

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 92/254 (36%), Gaps = 26/254 (10%)

Query: 15  EDEQRTSFVSHLPTRS--DLLARMIPLDCTVSWTMRMYALTEYVGA--SHFLLVRWDLFQ 70
           +  ++   +S L   +  D+  + +       +      L   V    S   L +     
Sbjct: 5   DGPKKLPRLSKLDALTLLDITVKCLECSTEAEYKQIFALLNTIVPFDQSTSGLAKLSSDG 64

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV--------------FHTL 116
             +   + + ++P + ++            +++R    F P               F TL
Sbjct: 65  AVESYELANINYPVEWLQTYKEKNFSGIDVIVKRNFTSFTPQYWDHTYKAHKPAREFITL 124

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLF----PKGRIILRDRLWEIGLLAAYQANM 172
             +     G         F            F    P    IL+  +  + L ++    +
Sbjct: 125 ASDFNLIHGYTYGARPFGFCKQASLFSFSGNFKKYDPTVIAILQTIVPHLHLASS---RI 181

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +S  +   +   L+GRE E L+W+  GK+S +I+ IL IS  TVN +I +I++K   + 
Sbjct: 182 IESRLIQHNRKL-LSGREREVLSWLKHGKSSWDISTILQISECTVNYHIYNIIKKLDVQN 240

Query: 233 RSGAIAYAVRNNIV 246
           R  A+A A    I+
Sbjct: 241 RPQAVAVATHLGIL 254


>gi|269941319|emb|CBI49716.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 207

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 43/84 (51%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++     ++F++         +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++
Sbjct: 124 KMIHLKAQDVFETVSQKPHYTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVS 183

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K     R+ A  YA+ N ++
Sbjct: 184 HIFSKLQVSDRTQAAIYAMENKLI 207


>gi|258516412|ref|YP_003192634.1| transcriptional regulator, LuxR family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780117|gb|ACV64011.1| transcriptional regulator, LuxR family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 224

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+   ++ EIA  L IS  TV  ++++I+RK   + RS AI Y+ +N +
Sbjct: 160 LTRREMEILQLIAISLSNREIAKRLFISEPTVKTHVSNILRKLGQQNRSQAIVYSYKNGL 219

Query: 246 V 246
           +
Sbjct: 220 I 220


>gi|171778156|ref|ZP_02919413.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283138|gb|EDT48562.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 214

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +   +    L  E K D +V      DLV    +S  +    +L+   E    V
Sbjct: 30  VEVVGEAGNGIEGIKLALELKPDVVV-----MDLVMP-EMSGVEATLKLLKEWKEAKILV 83

Query: 113 FHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
             +  +N             Y   T   A I   +  +      I  +            
Sbjct: 84  LTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIQKVARGELAIETE-----------V 132

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
               K++D       +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K  
Sbjct: 133 DKKIKAHDQKPELHEDLTARERDILRLLAKGYDNQTIADELFISLKTVKTHVSNILAKLE 192

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A+ YA ++++V
Sbjct: 193 VDDRTQAVVYAFKHHLV 209


>gi|228994130|ref|ZP_04154030.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
 gi|228765582|gb|EEM14236.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
          Length = 215

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170
           V   L    +     D     L   +     G + L P     +L   L         QA
Sbjct: 91  VLPALKAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIASALLSQTLP--------QA 142

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +S ++H      LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K   
Sbjct: 143 EKQESSNIHVDV---LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILGKLNL 199

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A  YAV+N +V
Sbjct: 200 SDRTQAALYAVKNGVV 215


>gi|126640216|ref|YP_001083200.1| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978]
          Length = 198

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 176 YDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            DV + K +  LT RE E L W +EGKTS EIA ILG++  TVN ++++ M+K     + 
Sbjct: 127 NDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKI 186

Query: 235 GAIAYAVRNNIV 246
            A   AV   ++
Sbjct: 187 SAAIRAVMLGLL 198


>gi|298695117|gb|ADI98339.1| probable response regulator protein [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 207

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 43/84 (51%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++     ++F++         +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++
Sbjct: 124 KMIHPKAQDVFETVSQKPHYTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVS 183

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K     R+ A  YA+ N ++
Sbjct: 184 HIFSKLQVSDRTQAAIYAMENKLI 207


>gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis]
 gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis]
          Length = 213

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 18/186 (9%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L   +  Q ++ D I+       ++  +   E  +         ++       L ++   
Sbjct: 32  LSALNRIQRRRPDLILLD----AMMPGLDGFETCQRIKADAATADIPVLFMTALTDSEHV 87

Query: 123 PAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
             G       Y +   +   +   +       RI+   R       AA QA      D  
Sbjct: 88  VKGFAAGGIDYVTKPINTEEVLARVASHLRTARILQTAR-------AASQAQPLTLNDEP 140

Query: 180 ----WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                   F+LT REVE L W++ GKT+ +I  ILG+S  TVN ++  +  K   +TR+ 
Sbjct: 141 AYATLSARFQLTEREVEVLRWVACGKTNRDIGDILGLSPRTVNKHLEHVYVKLGVETRTA 200

Query: 236 AIAYAV 241
           A + A+
Sbjct: 201 ATSVAL 206


>gi|298346055|ref|YP_003718742.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315657448|ref|ZP_07910330.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236116|gb|ADI67248.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315491920|gb|EFU81529.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 248

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +     D +   L   +  +  G   + P+    + +       L   Q  +
Sbjct: 115 FAALRAGASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMF--APQLPGEQDEV 172

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            ++  V       LT RE E LT I++G T+ EIA  L IS  TV  ++ +I+ K   + 
Sbjct: 173 EEANLVDKALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARD 232

Query: 233 RSGAIAYAVRNNIV 246
           R  A+ +A  N +V
Sbjct: 233 RVQAVIFAYENGLV 246


>gi|313884941|ref|ZP_07818693.1| putative oxygen regulatory protein NreC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619632|gb|EFR31069.1| putative oxygen regulatory protein NreC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 211

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 12/166 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARI 140
            DLV  + +   +    ++Q  P      V   L +    PA       Y   T     I
Sbjct: 53  MDLVMDV-MDGIEATQRIMQDWPQAKIIIVTSFLDDEKVYPALEAGAKSYILKTSSAKEI 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +   +  G  ++ D + +I L    + +  + +D       ELT RE E L  I++G
Sbjct: 112 AEAIRETY-SGEQVMDDEVNDILLAKDIKDSQPQLHD-------ELTRREYEVLLLIAKG 163

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L I+  TV  ++++I+ K     R+ A  YA ++ +V
Sbjct: 164 YSNQEIADELFITLKTVKTHVSNILAKLEVSDRTQATIYAYQHKLV 209


>gi|297567827|ref|YP_003686798.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946]
 gi|296852276|gb|ADH65290.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946]
          Length = 206

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 17/140 (12%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +L   V   +               SL   +    IG   L P+   I    L ++ +L+
Sbjct: 84  QLEAEVLAAMTAGADAYCLKSTDPASLLLAIRAAAIGSTYLDPQ---IAHIVLGQLSVLS 140

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             QA              +L+ RE+E L  I+EG ++ EIA  LGIS +TV  +I  ++ 
Sbjct: 141 GGQA--------------QLSPRELEVLRLIAEGLSNKEIAQRLGISLSTVKTHIEELLA 186

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K +   R+ A   AVR  ++
Sbjct: 187 KLSASDRTQAAIKAVRQGLL 206


>gi|330684760|gb|EGG96455.1| putative response regulator protein VraR [Staphylococcus
           epidermidis VCU121]
          Length = 207

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 17/179 (9%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD--- 127
           LD + +++ P  ++  + + + +       +      +   V  +  ++    + ++   
Sbjct: 40  LDYLENNEQPDIVLLDLVMPDMNGIEITEYLKNNYPNIKILVLTSYVDDEHVISALEKGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +  ++   +  +    RII  D        A +  +   S      K   L+
Sbjct: 100 DGYEMKDVEPQKLIETIHNVLDGKRIIHPD--------AKHVLDSMSSKPHFTNK---LS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 149 KRETEVLKEMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|312880287|ref|ZP_07740087.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
 gi|310783578|gb|EFQ23976.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
          Length = 226

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 7/172 (4%)

Query: 77  IVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +V    P  L+  + +   D       + +    +         +     A         
Sbjct: 44  VVKQLQPHVLLFDVNMPRMDGVQVVKELHETCRNIKYVAITAFDDEDHLAALSSVGIDGY 103

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
               +    GL+ L    R + R   +    +A      F           +LT RE E 
Sbjct: 104 VLKAS----GLVELLSAVRSVTRGENYVDPKVAGKLLTSFHRRREERDLLVDLTPREREV 159

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L W+S+G ++ EIA+ + +S  TV N+++ ++RK     R+ A   A +  +
Sbjct: 160 LYWLSQGFSNAEIALKMVLSEKTVKNHVSHVLRKLELNDRTQAAVLAWKMGL 211


>gi|86750432|ref|YP_486928.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573460|gb|ABD08017.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           HaA2]
          Length = 240

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 10/186 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV----FHTLPE----NITP 122
           +Q++ ++V   WP                  ++R +    P         P+     I  
Sbjct: 54  KQQIANVVLHRWPLRWSERYFSRGYLFEDPTIRRVSTSSEPFVWSELQVGPDARANEIMR 113

Query: 123 PAGMDNRYCSLTFDVA--RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
            AG     C  T  +     +   + +      +       + L+A Y            
Sbjct: 114 EAGEFGLGCGFTVPMITLDGQSAGLSIAGDRAELPPSHRGMVQLVAMYAFLRSLKLGEKP 173

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L WI+EGKT  EI+ IL +S + V+     I  K     R  A+A A
Sbjct: 174 TPAITLTKREADVLHWIAEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALA 233

Query: 241 VRNNIV 246
           +R+ I+
Sbjct: 234 MRSGII 239


>gi|258423125|ref|ZP_05686019.1| response regulator receiver [Staphylococcus aureus A9635]
 gi|257846689|gb|EEV70709.1| response regulator receiver [Staphylococcus aureus A9635]
          Length = 207

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 73/185 (39%), Gaps = 17/185 (9%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPA 124
              E  L+ +   + P  ++  + +   +       +     E+   V  +  ++    +
Sbjct: 34  ADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPEIKVLVLTSYVDDEHVIS 93

Query: 125 GMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            ++   + Y     +  +      L+    R++  +++           ++ ++      
Sbjct: 94  AINKGADGYEMKDVEPQQ------LIETIRRVMNDEKMIHPKA-----QDVIETVSQKPH 142

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+
Sbjct: 143 YTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAM 202

Query: 242 RNNIV 246
            N ++
Sbjct: 203 ENKLI 207


>gi|227820412|ref|YP_002824383.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227339411|gb|ACP23630.1| probable two-component response regulator protein [Sinorhizobium
           fredii NGR234]
          Length = 305

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            +     L    A    S D    + F LT RE E L WI++GK++ +I  ILG+S  TV
Sbjct: 216 AIGANEYLFRLTAENGMSDDEMLRQHFHLTQRESEVLLWIAKGKSNRDIGEILGLSARTV 275

Query: 218 NNYIASIMRKTATKTRSGAIAYAVR--NNI 245
             ++  I  K   + R+ A   A +  + I
Sbjct: 276 TKHLEQIYVKLGVENRASAAVKATQVLHGI 305


>gi|295705373|ref|YP_003598448.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803032|gb|ADF40098.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 213

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 83/215 (38%), Gaps = 10/215 (4%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
            R++ +D        +  + E      F++V      ++ ++ +     P  ++  + + 
Sbjct: 4   FRILIVDDHAHAREGIRDILEEYE--DFIIVGEGTNGQEAIE-LTEKLMPDIVLMDIGMP 60

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
             D     L+   ++     +     IT    + + + +L        +  +        
Sbjct: 61  VMDG----LEATKQIKLQFPYVKIVVITVSDDITDLFDALKKGAQGYLLKNLQSEVWYDY 116

Query: 154 ILRDRLWEIGL---LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           +    L E+ +   +A      F         D  L+ RE+E L  +++G ++ +I+  L
Sbjct: 117 LRAFALDEVPMSKEIAFQILKEFPQETSIKKPDTPLSARELEVLQLVAKGLSNRDISAQL 176

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS +TV +++ +I+ K   + R    +YA +N +
Sbjct: 177 FISEHTVKSHLKNILSKLHLENRVQLTSYAFQNGL 211


>gi|223694801|gb|ACN18083.1| two component transcriptional regulator [uncultured bacterium BLR5]
          Length = 215

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H+G++  LT RE E L  ISEG ++ E+   L IS  TV  ++ +I+ K     R+ A++
Sbjct: 146 HFGEE-NLTSRETEVLQLISEGNSNKEVGNRLSISEETVKGHVKNILGKLGANDRTQAVS 204

Query: 239 YAVRNNIV 246
            AVR  I+
Sbjct: 205 IAVRRGII 212


>gi|329935958|ref|ZP_08285759.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304565|gb|EGG48442.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 254

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 136 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 193

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 194 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 251


>gi|271962079|ref|YP_003336275.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505254|gb|ACZ83532.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 212

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 11/175 (6%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-----PENITPP-AGMDNRY 130
           +V S  P  L+  + +   D    +++       P    L      E++ P      + +
Sbjct: 42  LVESLAPDVLLLDLKMPVLDGLGTLVRLAEHGLSPRVLVLTSVGDREDVAPAMRAGASGF 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D A +   +  +     ++  +        A                   LT RE
Sbjct: 102 LYKDVDPAALVQAIRAVHGGQVLLAPE-----AAEAMLSVPAPAPAPAEGRYVAPLTDRE 156

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E LT I+ G+++ EIA  L ++  TV  ++++++ K   + R+ A  YAVRN +
Sbjct: 157 REVLTLIASGRSNREIARELAVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRNGL 211


>gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 246

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 93/247 (37%), Gaps = 23/247 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMY-ALTEYVGASHFLLVRWDLFQEQKLD-S 76
            ++ +     + + +  + P    V     +  A+  Y+  S+F++   D+ +  KL   
Sbjct: 1   MSNQIPENEPQGEEIPPVSPRLLLVDDEPGLREAVQAYLEDSNFIV---DVAENAKLGWE 57

Query: 77  IVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPEN-----ITPPAGMDN 128
           ++  + P  ++  + + E D Y     +   P     PV     +      I       +
Sbjct: 58  LLQQNLPDLVITDIMMPEVDGYQFLEQMRSEPKFKALPVVFLTAKGMKGDRIQGYQAGCD 117

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------ 182
            Y S  FD   +   +  L  +     ++       + A    + +  ++  GK      
Sbjct: 118 AYLSKPFDPEELVAIVKNLLERRAATRQEAEEGTPDITALAGQIARIENMLKGKTGINLS 177

Query: 183 ----DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + 
Sbjct: 178 PSPIKIDLTPREQSVLDLVAQGLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVR 237

Query: 239 YAVRNNI 245
           YA+ + +
Sbjct: 238 YALEHGL 244


>gi|84495164|ref|ZP_00994283.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384657|gb|EAQ00537.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 219

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  +          RP  L    F              + +     
Sbjct: 49  DVVLMDVRMPEVNGLDAAATILASPSPDRPHVLMLTTFDVDDYVYEALRIGASGFMLKDA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + ++     ++       +        +             ELT RE+E L 
Sbjct: 109 PSEELARAVRVVAAGDSLLAPSVTKRLIAEVTKSRSGVPKDSPRLR---ELTPRELEVLE 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L ++  TV  +++ ++ K   + R+ A+ +A  + +V
Sbjct: 166 LIARGLSNVEIATRLFVAEQTVKTHVSRVLAKLGLRDRAQAVVFAYEHGVV 216


>gi|148253086|ref|YP_001237671.1| LuxR transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405259|gb|ABQ33765.1| Regulatory protein, LuxR [Bradyrhizobium sp. BTAi1]
          Length = 201

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           + ++ A  A++ ++    W K+  L  RE+E LTW++ GKTS EIA ILG+S+ TV+ +I
Sbjct: 117 VSIINARLAHVARTD--VWVKEVNLNHREIETLTWVARGKTSAEIAKILGLSKRTVDFHI 174

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +   K    TR+ A   AV   ++
Sbjct: 175 DNARIKLGVATRTQAAIKAVTGKLI 199


>gi|239981891|ref|ZP_04704415.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 243

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 125 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 182

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 183 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 240


>gi|313624283|gb|EFR94330.1| sensory transduction protein LiaR [Listeria innocua FSL J1-023]
          Length = 212

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 16/168 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARI 140
            DLV    +   +    +++   E    +  +  ++      ++    S    T   + I
Sbjct: 53  MDLVMD-EMDGIEATKEIMKNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEI 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198
              +   +    ++  +              M +       K     LT RE E L  I+
Sbjct: 112 ADAIRATYGGDSVLEPE----------VTGKMMQRLTAKPEKKLHDDLTNRENEILLLIA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 162 EGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|300117929|ref|ZP_07055696.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298724793|gb|EFI65468.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 215

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|269963001|ref|ZP_06177338.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832244|gb|EEZ86366.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 217

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 10/181 (5%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           V    ++++   +IV S  P      M LSE +     +    E    V       +T  
Sbjct: 44  VELPHYRDEHYMAIVDSSLPDLSEVKMTLSELEHVDATVLVNAEPNLGV----ESLLTWS 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGK 182
                 Y    FD  ++  GL  +      + RD L     L  Y  N+  +  ++    
Sbjct: 100 NLKGLFYFEDDFD--KVIRGLKGILSGENWLSRDILNR---LLGYLVNLNHTVTELDTKL 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ LT + +G ++ +IA  L +S +TV +++ SI RK   K R  A+A+A R
Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKR 214

Query: 243 N 243
           N
Sbjct: 215 N 215


>gi|149184172|ref|ZP_01862490.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148831492|gb|EDL49925.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 217

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 61/159 (38%), Gaps = 8/159 (5%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R + L+E        ++   L     H + + +  P         +  ++    IG +  
Sbjct: 65  RPLRLTEISAQAQSKEQKAFLEQAREHGITDGLIIPT------FGIRQNLGVFAIGQVKD 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                      L  +   A  Q  M  S     G    L+ RE E L WI+ GKT+ EIA
Sbjct: 119 LKVLERASVFALQAVAQAAHTQMEMLASR--ADGLRTNLSNRETEILHWIALGKTNSEIA 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ILGI   TV  YI  +  K   K RS A   A+R  I+
Sbjct: 177 TILGIGGPTVATYIKRVFDKLDVKDRSSAAVKAIRWGII 215


>gi|294500004|ref|YP_003563704.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349941|gb|ADE70270.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 213

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 76/215 (35%), Gaps = 10/215 (4%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
            R++ +D        +  + E      F++V      ++ ++ +     P  ++  + + 
Sbjct: 4   FRILIVDDHAHAREGIRDILEEYE--DFIIVGEGTNGQEAIE-LTEKLMPDIVLMDIGMP 60

Query: 94  EKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             D       +  R   +   V     +       +            +  +    L   
Sbjct: 61  VMDGLEATKQIKFRFPYVKIVVITVSDDITDLFDALKKGAQGYLLKNLQSEVWYDYL--- 117

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            R    D +     +A      F         D  L+ RE+E L  +++G ++ +I+  L
Sbjct: 118 -RAFALDEVPMSKEIAFQILKEFPQETSITKPDTPLSARELEVLQLVAKGLSNRDISAQL 176

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS +TV +++ +I+ K   + R    +YA +N +
Sbjct: 177 FISEHTVKSHLKNILSKLHLENRVQLTSYAFQNGL 211


>gi|282865219|ref|ZP_06274272.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560142|gb|EFB65691.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 250

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 132 GYLLKEISTDEVSTAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTE 189

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 190 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247


>gi|221067422|ref|ZP_03543527.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220712445|gb|EED67813.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 254

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 85/241 (35%), Gaps = 24/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V + L  ED    S +S    R      +            +  L E       LLV 
Sbjct: 38  QPVRVFLADEDRHSRSVISQELMRDPRTILIGQASSYREARKGV--LAEEFDV---LLVD 92

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L + Q  D +         V  +A+S  +K    +         V + L  +      
Sbjct: 93  LSLGEGQGADLLELVQLRMPNVLSIAISSSEKGDAAMD--AFKKGVVGYLLKNSWF---- 146

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y     +VA     +  +  K             L   +Q +      +   K  +
Sbjct: 147 --GSYSQAVLEVANGGASISPIVAKKI-----------LPKIFQYSAPNEIPLEHKKFEK 193

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++GK + EI   + IS  TV+ ++ +I RK   +TR+ A+ YAV   I
Sbjct: 194 LTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLKGI 253

Query: 246 V 246
           +
Sbjct: 254 I 254


>gi|51891787|ref|YP_074478.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855476|dbj|BAD39634.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 214

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 16/178 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMD 127
           E     +V  D    ++  +  +       +  R  ++   V  T  ++           
Sbjct: 45  EATKPDVVLMDMQMPVMNGVEATR-----QIRARFPDVEVLVLTTYDDDELIWGGIQAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y        ++  G+  +     ++  +       +AA    +         +  E L
Sbjct: 100 KGYLLKDAPPQQLLEGIETVARGQSLLSPE-------IAAKLVQVISQGGPARQEGAEGL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E L  I+ G  + EIA  L IS NTV  +I+++ +K   + R+ A+  A+   
Sbjct: 153 TERETEILRLIASGAANKEIAAALFISENTVKTHISNLFQKLGARDRTEAVTKALARG 210


>gi|119715674|ref|YP_922639.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536335|gb|ABL80952.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 213

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y      +  +   + ++     +I       + L+  ++       D   G   
Sbjct: 93  SGASGYLLKDSSIEEVAQAVRVVADGQSLISPS--MAVKLIDEFKQMSRPERDHVPG--L 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  +++G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAV+  
Sbjct: 149 RLTERELEVLRLVAKGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVMYAVKEK 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|326441393|ref|ZP_08216127.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 250

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 132 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 189

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 190 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247


>gi|330958109|gb|EGH58369.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 254

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L 
Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDEKMRSCTAIKLTRRERECLSWSAEGLTAREIADQLN 217

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  TV  ++ S M+K   K R  A+  AV   ++
Sbjct: 218 RSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252


>gi|296268221|ref|YP_003650853.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091008|gb|ADG86960.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 206

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 16/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +          D    +L   +  +  G +LL P+                A +A 
Sbjct: 88  VLPAMRAGAAGFLYKDVDPEALVQAIRAVHEGQVLLAPE----------------AAEAV 131

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +          +  LT RE E L  I+ G+++ EIA  L ++  TV  ++++++ K   +
Sbjct: 132 LGGPAAPPGEPEIALTAREREVLRLIAAGRSNREIARELSVAEKTVKTHVSNVLMKLGVQ 191

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAVR  +V
Sbjct: 192 DRTQAALYAVRRGLV 206


>gi|206975855|ref|ZP_03236766.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962901|ref|YP_002341479.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098883|ref|YP_002532941.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229142155|ref|ZP_04270680.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST26]
 gi|206745949|gb|EDZ57345.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217063637|gb|ACJ77887.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242942|gb|ACM15652.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228641444|gb|EEK97750.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST26]
          Length = 215

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N +V
Sbjct: 201 DRTQAALYAVKNGVV 215


>gi|269956412|ref|YP_003326201.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305093|gb|ACZ30643.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 234

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F+             + +       A++  G+  +     ++  +      L+  Y + +
Sbjct: 89  FNLDEYVYEALRAGASGFLLKDAPPAQLLDGIRTVAAGSALLAPEVTRR--LVGRYASRV 146

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                     D  LT RE++ L  ++EG ++ EIA  L I+R TV  Y++ I+ K   + 
Sbjct: 147 APPEPAPA--DGPLTPRELDVLRLLAEGLSNAEIAAALVITRETVKTYVSRILTKLDLRD 204

Query: 233 RSGAIAYAVRNNIV 246
           R  A+ +A +  +V
Sbjct: 205 RVQAVVWAYQTGLV 218


>gi|52787183|ref|YP_093012.1| YvqC [Bacillus licheniformis ATCC 14580]
 gi|163119642|ref|YP_080588.2| two-component response regulator LiaR [Bacillus licheniformis ATCC
           14580]
 gi|319647713|ref|ZP_08001931.1| YvqC protein [Bacillus sp. BT1B_CT2]
 gi|52349685|gb|AAU42319.1| YvqC [Bacillus licheniformis ATCC 14580]
 gi|145903152|gb|AAU24950.2| two-component response regulator LiaR [Bacillus licheniformis ATCC
           14580]
 gi|317390054|gb|EFV70863.1| YvqC protein [Bacillus sp. BT1B_CT2]
          Length = 211

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 13/177 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPENITPPAGMDNRYCS 132
            +     P  ++  + +   D      Q   +L  P   V  +  ++      ++    S
Sbjct: 41  ELALETKPDVILMDLVMEGMDGIEATKQICRQLADPKIIVLTSFVDDDKVYPVIEAGALS 100

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGR 189
                ++              I    + E  L A     +        G+      LT R
Sbjct: 101 YLLKTSKA-------SEIADAIRAASVGEPKLEAKVAGKVLSKLRHSAGEQPLHQSLTAR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  ++EGKT+  IA  L I+  TV  ++ +I+ K     R+ A  YA RN +V
Sbjct: 154 ELEILKLVAEGKTNKGIAEELYITIKTVKTHVTNILSKLEVDDRTQAAIYAHRNKLV 210


>gi|121605575|ref|YP_982904.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120594544|gb|ABM37983.1| transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 262

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 29/207 (14%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK--------DKYYNVLQRPTELFCPVF 113
           LL  W  FQE  +   + S  P      +             + +    ++P  L    F
Sbjct: 48  LLAGWGNFQEGSIRHDIVSRLPGARSYAVGTDGLPFLLGKFHESWVLAGRQPNSLDFRNF 107

Query: 114 HTLPENITPPAGMD------------------NRYCSLTFDVARIRIGLMLLFPKGRIIL 155
             L  N + P                       +Y  L   ++   I         ++++
Sbjct: 108 EYLLGNASLPDSFGSALRNMRSVLIHGMRDERGQYECLYVLLSVHEIPAESASGAIKVLM 167

Query: 156 R---DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
                 L ++  L   Q    KS  V   + F L+ RE++ + W++ GKT+ EI  IL I
Sbjct: 168 PFIDSALRQVAQLPQQQKPFAKSPRVVQEEIFGLSEREIQIMDWVAMGKTNSEIGSILNI 227

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  TV N++  I +K     R+ A++ 
Sbjct: 228 SGFTVKNHMQRIFQKLNVFNRAQAVSK 254


>gi|315654640|ref|ZP_07907546.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
 gi|315491104|gb|EFU80723.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
          Length = 254

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 2/134 (1%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +     D +   L   +  +  G   + P+    + +       L   Q   
Sbjct: 121 FAALRAGASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMF--APQLPGEQDEA 178

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            ++  V       LT RE E LT I++G T+ EIA  L IS  TV  ++ +I+ K   + 
Sbjct: 179 EETNLVDKALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARD 238

Query: 233 RSGAIAYAVRNNIV 246
           R  A+ +A  N +V
Sbjct: 239 RVQAVIFAYENGLV 252


>gi|229020635|ref|ZP_04177369.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
 gi|229026848|ref|ZP_04183176.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228734456|gb|EEL85122.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228740659|gb|EEL90923.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
          Length = 215

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K     R+ A  YAV+N I
Sbjct: 155 LTARENEVLQLLAKGMSNKEIAAVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|239637871|ref|ZP_04678832.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri
           L37603]
 gi|239596434|gb|EEQ78970.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri
           L37603]
          Length = 207

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 13/171 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D     +  + ++E  K +    +   L   V       I+      + Y     
Sbjct: 50  DIVLLDLVMPDMNGIEITEYLKKHYPNIKILVLTSYV--DDEHVISAIEKGADGYEMKDV 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +  ++   +  +    RII  D             ++  S         +L+ RE E L 
Sbjct: 108 EPQKLIETIHNVLNGKRIIHPDA-----------KHVIDSMSSKPHFTNKLSKRETEVLK 156

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 157 EMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|42784585|ref|NP_981832.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42740517|gb|AAS44440.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 215

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N +V
Sbjct: 201 DRTQAALYAVKNGVV 215


>gi|89093728|ref|ZP_01166675.1| two-component transcriptional regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
 gi|89082124|gb|EAR61349.1| two-component transcriptional regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
          Length = 303

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  E+T RE E L WI+ GKT+ EIA ILG+S  TVN ++  +  K   + R+ A   A+
Sbjct: 237 EKLEITERESEVLHWIANGKTNREIAEILGMSPRTVNKHLEQLFPKLGVENRTAAAGVAL 296

Query: 242 R 242
           R
Sbjct: 297 R 297


>gi|304390186|ref|ZP_07372140.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326668|gb|EFL93912.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 248

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 2/134 (1%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +     D +   L   +  +  G   + P+    + +       L   Q   
Sbjct: 115 FAALRAGASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMF--APQLPGEQDEA 172

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            ++  V       LT RE E LT I++G T+ EIA  L IS  TV  ++ +I+ K   + 
Sbjct: 173 EEANLVDKALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARD 232

Query: 233 RSGAIAYAVRNNIV 246
           R  A+ +A  N +V
Sbjct: 233 RVQAVIFAYENGLV 246


>gi|295696008|ref|YP_003589246.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295411610|gb|ADG06102.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 223

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 11/173 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D   + +  +  S       +L+R  +    V  +  ++      ++    S   
Sbjct: 55  DVVLMDLVMEPIDGIETSR-----RILERLPDCKIIVLTSYVDDDKIYPALEAGAFSYLL 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVEC 193
             +R       +    R  ++ +      +AA      +  D    +    +LT RE E 
Sbjct: 110 KTSRAA----EIAQAIRAAVQGQSVLEAQVAAKVMARVRRPDGQNERPLHEQLTDREREV 165

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++EG ++ E+A  L I   TV  ++ +I+ K   + R+ A+ YA ++ +V
Sbjct: 166 LLLLAEGYSNQEVADALHIGVKTVKFHVTNILDKLQVEDRTQAVIYAYKHGLV 218


>gi|241206011|ref|YP_002977107.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859901|gb|ACS57568.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 305

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 137 VARIRIGLMLLFPKGRIILRDR-LWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192
           VA +R G++ +   G+  L+   L  IG    L    A   +S D    + F LT RE E
Sbjct: 191 VAAVRDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAASQRSDDEVLRQRFSLTQRESE 250

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 251 VLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|229094522|ref|ZP_04225591.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-42]
 gi|228688906|gb|EEL42736.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-42]
          Length = 215

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ EIA +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEESSIQVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|116253485|ref|YP_769323.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258133|emb|CAK09234.1| putative LuxR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 305

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 137 VARIRIGLMLLFPKGRIILRDR-LWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192
           VA +R G++ +   G+  L+   L  IG    L    A   +S D    + F LT RE E
Sbjct: 191 VAAVRDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAASQRSDDEVLRQRFSLTQRESE 250

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 251 VLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|120556773|ref|YP_961124.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
 gi|120326622|gb|ABM20937.1| two component transcriptional regulator, LuxR family [Marinobacter
           aquaeolei VT8]
          Length = 301

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S      + F+LT RE + L WI+ GKT+ EI  IL +S  TVN ++  + RK   + R
Sbjct: 228 NSASAALRERFDLTLRESDVLLWIANGKTNREIGQILEMSPRTVNKHLEQVFRKMNVENR 287

Query: 234 SGAIAYAVR 242
           + A A A+R
Sbjct: 288 TAAAANAIR 296


>gi|23099974|ref|NP_693440.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778205|dbj|BAC14475.1| two-component response regulator involved in degradative enzyme
           [Oceanobacillus iheyensis HTE831]
          Length = 230

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L          +    +L   +  +  G   L P+   +  + + E   LA   ++
Sbjct: 95  VTHALKTGAQGYLLKEMDSDALIDAIKVVSDGGSYLHPR---VTHNLVKEYRRLAKENSS 151

Query: 172 MFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                 + + K   L T RE + L  +++GK++  +A  L IS  TV N++++I++K   
Sbjct: 152 SIADKGIEYRKPLHLLTKRECQVLQLLADGKSNRAVAETLYISEKTVKNHVSNILQKMNV 211

Query: 231 KTRSGAIAYAVRNN 244
             R+ A+  A+R  
Sbjct: 212 NDRTQAVVSAIRKG 225


>gi|319892883|ref|YP_004149758.1| Two-component response regulator-like protein [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162579|gb|ADV06122.1| Two-component response regulator-like protein [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 208

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 67/170 (39%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFD 136
           P  ++  + + E +       + ++   +   V  +  +     + M    + Y     D
Sbjct: 50  PELILVDLVMPEMNGITLIQKLKEQHAGIKILVLTSYVDEEHVMSAMQAGADGYEMKDVD 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +    ++I +D        A    +   +      K   L+ RE E L  
Sbjct: 110 PEALMTSIETVLQGDKVIHKD--------AQQVMDTVITKPHMLNK---LSKRETEVLKE 158

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N+++
Sbjct: 159 MAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENHLI 208


>gi|315657926|ref|ZP_07910800.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|315496962|gb|EFU85283.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 207

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 20/177 (11%)

Query: 78  VSSDWPFDLVR-CMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITPPAGMD---NR 129
           +S + P D+V   + + E +    V +       ++   V  +  ++    + ++   + 
Sbjct: 43  LSENQPPDIVLLDLVMPEMNG-IEVTEFLKKNYSDIKVLVLTSYVDDEHVISAINKGADG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     + A++   +  +    RII  +              + ++         +L+ R
Sbjct: 102 YEMKDVEPAKLIETIRRVLVGERIIHPEA-----------KTVMEAVAKKPHYTNKLSKR 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA++NN++
Sbjct: 151 EIDVLREMVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNNLI 207


>gi|239930904|ref|ZP_04687857.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439281|ref|ZP_06578671.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342176|gb|EFE69132.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 248

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL  +++ + ++ +        LT 
Sbjct: 130 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLTEFKSMIQRTDERRLVPAPRLTD 187

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 188 RELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 245


>gi|319653424|ref|ZP_08007524.1| response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394908|gb|EFV75646.1| response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 80/204 (39%), Gaps = 20/204 (9%)

Query: 55  YVGASHFLLVRWDLFQEQKLD------SIVSSDWPFDLVRCMALSEKDKYYNVLQ----R 104
            +G S +L  + D+    + D       +     P  ++  + + E D      +     
Sbjct: 14  RIGVSSYLTAQPDIEVIGEADNGKTAIDLALELRPDIILMDLVMKEMDGIEATRRIIEQW 73

Query: 105 PTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           P      V   L +    PA       Y   T   + I   +   +    ++  +   ++
Sbjct: 74  PEAKIIIVTSFLDDEKVYPALEAGATSYMLKTSKASEIAEAVRSTYHGQSVLEPEVTGKM 133

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +              H     ELT RE+E L  +++GKT+ +IA  L I+  TV  +++
Sbjct: 134 MV--------KMRQKNHQLPHEELTSREMEILLLMTQGKTNQDIADELFIALKTVKTHVS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I+ K   + R+ A+ YA ++++V
Sbjct: 186 NILSKLQVQDRTQAVIYAFKHSLV 209


>gi|270308516|ref|YP_003330574.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270154408|gb|ACZ62246.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 225

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----F 184
            C      A   +  +    +G   + + L     LA      F+   +  GKD      
Sbjct: 103 ACLKKSSTAEELVETIRRANRGEYPINESLMSSPNLAKQVLAQFQDVSM-LGKDASNFVT 161

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + LT I+ G T+ +IA  L IS  T+ N++++I+RK     R+ A+  A+R  
Sbjct: 162 PLTNREKQILTLIANGNTNKQIANSLEISEQTIKNHVSAILRKLNANDRAHAVVVAIRCG 221

Query: 245 IV 246
           ++
Sbjct: 222 LI 223


>gi|289550436|ref|YP_003471340.1| Two-component response regulator-like protein [Staphylococcus
           lugdunensis HKU09-01]
 gi|289179968|gb|ADC87213.1| Two-component response regulator-like protein [Staphylococcus
           lugdunensis HKU09-01]
          Length = 207

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 20/177 (11%)

Query: 78  VSSDWPFDLVR-CMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITPPAGMD---NR 129
           +S + P D+V   + + E +    V +       ++   V  +  ++    + ++   + 
Sbjct: 43  LSENQPPDIVLLDLVMPEMNG-IEVTEFLKKNYSDIKVLVLTSYVDDEHVISAINKGADG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     + A++   +  +    RII  +              + ++         +L+ R
Sbjct: 102 YEMKDVEPAKLIETIRRVLAGERIIHPEA-----------KTVMEAVAKKPHYTNKLSKR 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA++NN++
Sbjct: 151 EIDVLREMVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNNLI 207


>gi|328957201|ref|YP_004374587.1| two-component response regulator [YvqE] responding to cell wall
           stress [Carnobacterium sp. 17-4]
 gi|328673525|gb|AEB29571.1| two-component response regulator [YvqE] responding to cell wall
           stress [Carnobacterium sp. 17-4]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +      +   ++   +     G  +L P+    + +RL +  +   ++  
Sbjct: 90  VYPALEAGASSYILKTSTASTIANAIRSTYKGETILEPEVTGKMMERLTKKHVHQLHE-- 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        +LT RE E L  I++G ++ EIA  L I+  TV  ++++I+ K   +
Sbjct: 148 -------------DLTNREQEILMLIAQGNSNQEIADALFITLKTVKTHVSNILAKLEVE 194

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YA +++++
Sbjct: 195 DRTQAAIYAFKHHLI 209


>gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
 gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 246

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 93/247 (37%), Gaps = 23/247 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMY-ALTEYVGASHFLLVRWDLFQEQKLD-S 76
            ++ +     + + +  + P    V     +  A+  Y+  S+F++   D+ +  KL   
Sbjct: 1   MSNQIPENEPQGEEIPPVSPRLLLVDDEPGLREAVQAYLEDSNFIV---DVAENAKLGWE 57

Query: 77  IVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPEN-----ITPPAGMDN 128
           ++  + P  ++  + + E D Y     +   P     PV     +      I       +
Sbjct: 58  LLQQNLPDLVITDIMMPEVDGYQFLEQMRSDPKFKALPVVFLTAKGMKGDRIQGYQAGCD 117

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------ 182
            Y S  FD   +   +  L  +     ++       + A    + +  ++  GK      
Sbjct: 118 AYLSKPFDPEELVAIVKNLLERRAATRQEAEDGTPDITALAGQIARIENMLKGKTGINLS 177

Query: 183 ----DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + 
Sbjct: 178 PSPIKIDLTPREQSVLDLVAQGLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVR 237

Query: 239 YAVRNNI 245
           YA+ + +
Sbjct: 238 YALEHGL 244


>gi|317130322|ref|YP_004096604.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475270|gb|ADU31873.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 232

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L    +     +    +L   V  +  G   + PK    L +   ++      +  
Sbjct: 95  VTHVLKTGASGYLLKEMDTEALIEAVKVVGEGGAYIHPKVTHNLINEYRKLANEDRLEPE 154

Query: 172 MFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +    +V + +   L T RE E L  +++GK++  I   L IS  TV N++++I++K   
Sbjct: 155 VGFR-EVEFRRPLHLLTRRECEVLQLMTDGKSNRAIGEALYISEKTVKNHVSNILQKMGM 213

Query: 231 KTRSGAIAYAVRNN 244
             R+ A+  A++N 
Sbjct: 214 NDRTQAVVDAIKNG 227


>gi|169827260|ref|YP_001697418.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168991748|gb|ACA39288.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 204

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIR 141
            D V  +    +     +   P      V   L ++   PA       Y   T +  +I 
Sbjct: 47  MDNVMPIMTGAEATAEILAAWPEAKIMMVTSFLDDDKVYPALEAGAVSYILKTSNAKQIA 106

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++  +      + +     M    +    +  +LT RE+E L  +++GK
Sbjct: 107 EAIRKTMGGETVLEPE------VTSKMMHRMRNGNNTPLYE--QLTDREMEVLLLMAQGK 158

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + EIA  L I+  TV  ++++I+ K   + R+ A+ YA +N +
Sbjct: 159 ANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 202


>gi|134094678|ref|YP_001099753.1| putative two-component response regulator protein [Herminiimonas
           arsenicoxydans]
 gi|133738581|emb|CAL61626.1| Two-component response regulator, LuxR family [Herminiimonas
           arsenicoxydans]
          Length = 315

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           + EI LL   + +  +           LT RE E L+W+++GKT+ +I  IL +S  TV+
Sbjct: 219 MDEIMLL--LELSSNRMLPTGRLASAALTPRETEVLSWLAKGKTNRDIGDILQLSPRTVS 276

Query: 219 NYIASIMRKTATKTRSGAIAYA 240
            ++  I  K   +TRS A+A A
Sbjct: 277 KHLEHIFEKLGVETRSAAVAMA 298


>gi|119946605|ref|YP_944285.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
 gi|119865209|gb|ABM04686.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
          Length = 295

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 41/86 (47%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           +R  E   L        +           +T RE E L W+S GKTS EI++IL +S  T
Sbjct: 206 ERQQENMHLLRIVQKAPQKNPQDLKNKLPITKRESEVLYWVSYGKTSWEISLILEMSPRT 265

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVR 242
           VN ++  I +K     R+ A A ++R
Sbjct: 266 VNKHLEQIYKKLGVDNRTSAAAISIR 291


>gi|330992245|ref|ZP_08316193.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter
           sp. SXCC-1]
 gi|329760444|gb|EGG76940.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter
           sp. SXCC-1]
          Length = 244

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 25/230 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT--EYVGASHFLLVRWDLFQEQKLDSIV 78
           +F + +         M  +  T      + A T  ++   +H+ + R     +  +D + 
Sbjct: 34  AFGALVSRLGPHAYSMGTIHKTDPLQRHLIATTYPDHW-MAHY-VARNYHHIDPVIDPLR 91

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
               P+D           K  ++  R  +     F  +               ++   +A
Sbjct: 92  HGLHPYDW----------KDIHIENRRQDTMLREFGEMGFRSGH---------AVPLALA 132

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAA-YQANMFKSYDVHWG-KDFELTGREVECLTW 196
              + L+ +      I   +   I L A+ +     +    H G     LT RE ECLTW
Sbjct: 133 PGTLLLVSIASYDPHIDTRQQMAIQLAASQFHYRYHQLGRKHAGITGTGLTRRERECLTW 192

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++GK + +I  IL +S NT+  ++ + +RK     R  A   A    ++
Sbjct: 193 VAQGKDTADIGHILALSDNTIKFHLKNALRKLGCHNRVQAAVKATCLGLI 242


>gi|298247251|ref|ZP_06971056.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297549910|gb|EFH83776.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 222

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 9/176 (5%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYY-------NVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           I  S  P  ++  + +   D            L+RP  L    F T    I       + 
Sbjct: 46  IAESQEPDVILMDIRMPVLDGIAATERVLQQALKRPRILLLTTFDTPELVIEGMRAGASG 105

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +   +  +     ++         LLA+ Q     +  +   +   LT R
Sbjct: 106 YLLKDCSAEELCTAIRAVARGQILLQASS--AAQLLASLQTKPVAAAPLSVAEQLGLTTR 163

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+E L  ++ G+++ EIA  L +S  TV  +I  I  K   + RS AI  A +  +
Sbjct: 164 ELEVLRLVTLGQSNTEIAAALFVSDATVKTHINHIFSKLGARNRSQAIIKARQLGL 219


>gi|255608035|ref|XP_002538833.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus
           communis]
 gi|223510221|gb|EEF23550.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus
           communis]
          Length = 234

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 17/181 (9%)

Query: 81  DWPFDLVR----------CMALSEKDKYYNVLQRP---TELFCPVFHTLPENITPPAGMD 127
           DWP D +              ++E  +            E           +     G  
Sbjct: 54  DWPPDWLELYVNRNFVAADYGVAEARRRIAPFTWREAKAERTLSRAEQDIWDTVVEWGWT 113

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           +   S+          ++ +  K + +   LR +L ++  L   +               
Sbjct: 114 DG-LSVPIHGPGGYFAIVTMAGKEQPMPPALRGKLQQLAFLTHERCRALTGLAPVTDPQA 172

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+ECL W++ GKT  +IA +LG+S+ T   +I    RK   +TRS A+A  V + 
Sbjct: 173 TLTHRELECLRWVAAGKTDLQIARLLGVSQTTARTHIDQARRKLGARTRSQAVARLVLSG 232

Query: 245 I 245
           +
Sbjct: 233 L 233


>gi|205375039|ref|ZP_03227830.1| DegU [Bacillus coahuilensis m4-4]
          Length = 225

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 4/134 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L          +    +L   V  +  G   L PK   +  + + E   L   Q  
Sbjct: 90  VSHALQTGALGYLLKEMDADALVNAVKVVSEGGSYLHPK---VTHNLVREYRQLIKEQHQ 146

Query: 172 MFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                 V   +   L T RE E L  +++G ++  I   L IS  TV N++++I++K   
Sbjct: 147 QTVYQPVEIRRPLHLLTRRECEVLQLLADGCSNRTIGETLYISEKTVKNHVSNILQKMNV 206

Query: 231 KTRSGAIAYAVRNN 244
             R+ A+  A++  
Sbjct: 207 NDRTQAVVTAIKKG 220


>gi|239934234|ref|ZP_04691187.1| two component LuxR family transcriptional regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291442679|ref|ZP_06582069.1| two component transcriptional regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345574|gb|EFE72530.1| two component transcriptional regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 230

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 5/174 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    L+  +  + +    +    P  L    F+             + +     
Sbjct: 55  DVVVMDIRMPLLDGIQATRQLAGPDTEDAPKVLVVTTFNVDAYVYDALRAGASGFLLKDA 114

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVE 192
             A +  G+  +     ++         L+  +  ++  +      +      L  RE+E
Sbjct: 115 PPAELVNGIRTVARGEALLAPAVTRH--LIGHFAQHLRPADTSRPARQDVVRALAPRELE 172

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I+EG ++ EIA  + I+  TV  Y++ I+ K   + R  A+  A R  +V
Sbjct: 173 VLQLIAEGLSNAEIAAAMFITPETVKTYVSRILAKLDLRDRVQAVVLAYRVGLV 226


>gi|167584589|ref|ZP_02376977.1| LuxR family transcriptional regulatory protein [Burkholderia
           ubonensis Bu]
          Length = 222

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LA   A              E LT RE+E LT ++EG  + EIA  L IS NTV  +++S
Sbjct: 138 LARLLAEHKAPRQTASAALVEMLTPREIEVLTMLAEGLGNKEIARQLDISDNTVKFHLSS 197

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K    +R+ A+   +R+ +V
Sbjct: 198 IFGKLGASSRTEAVMQGMRHGLV 220


>gi|149180154|ref|ZP_01858659.1| DNA-binding response regulator [Bacillus sp. SG-1]
 gi|148852346|gb|EDL66491.1| DNA-binding response regulator [Bacillus sp. SG-1]
          Length = 216

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 7/120 (5%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y        ++   +  +F    +I      +  LL  +Q N  +  D     D  L
Sbjct: 98  ADGYLLKDAPSEQVVEAVRTVFSGESVIHPSLTRK--LLTFHQQNQRQDRD-----DNSL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  + EG ++ EI   L +S  TV  ++++I +K   K+RS  + YAV+N +V
Sbjct: 151 TEREREVLGCLVEGLSNKEIGKRLYVSDKTVKIHVSNIFKKLNVKSRSQVVIYAVQNKLV 210


>gi|319650241|ref|ZP_08004387.1| YhcZ protein [Bacillus sp. 2_A_57_CT2]
 gi|317398072|gb|EFV78764.1| YhcZ protein [Bacillus sp. 2_A_57_CT2]
          Length = 215

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
                +    ++            ELT RE+E L  I++GK++ EIA  L I+  TV  +
Sbjct: 127 HPKATSHLLTHLTNKNSTERQPLEELTKRELEVLREIAKGKSNKEIASSLYITEKTVKTH 186

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
           +++++ K     R+ A  YAVR+ I
Sbjct: 187 VSNLLSKLELADRTQAALYAVRHGI 211


>gi|229051230|ref|ZP_04194758.1| Response regulator receiver [Bacillus cereus AH676]
 gi|228722128|gb|EEL73545.1| Response regulator receiver [Bacillus cereus AH676]
          Length = 214

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 50/139 (35%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    F      +         Y     +   +   +  +     I       +      
Sbjct: 75  VLLTTFDVQQYVLDGIRAGAVGYILKDTETEEMLDSIRAMNRGAMIYNSTTANQAFTHFI 134

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            Q N +   D        LT RE++ L  ++ GK + EIA IL +S  TV  +I +I++K
Sbjct: 135 KQENDYNLADEELEYKEALTKREIDVLQLLAYGKQNHEIAKILFVSDGTVKTHIHNILQK 194

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R+ A   A+R  IV
Sbjct: 195 LDVTDRTQAAVMAIRKKIV 213


>gi|156977745|ref|YP_001448651.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116]
 gi|156529339|gb|ABU74424.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116]
          Length = 217

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 10/181 (5%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           V     Q++   +IV S  P      M LSE +     +    E    V       +T  
Sbjct: 44  VDLPPHQDEHYVAIVDSSLPDLSEVKMTLSELEHVDATILVNAEPNLGV----ESLLTWS 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGK 182
                 Y    FD  ++  GL  +      + RD L     L  Y  N+  +  ++    
Sbjct: 100 NLKGLFYFEDDFD--KVIRGLKGILSGENWLSRDILNR---LVGYLVNLNHTVTELDTKL 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ LT + +G ++ +IA  L +S +TV +++ SI RK   K R  A+A+A R
Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKR 214

Query: 243 N 243
           N
Sbjct: 215 N 215


>gi|297198721|ref|ZP_06916118.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197715398|gb|EDY59432.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 213

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 16/170 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D   + L++  EL  P        F      +         Y     
Sbjct: 51  PDVVLMDVKMPGMDG-IDALRKLRELNNPARVLIVTSFTEQRTMVPALRAGAAGYVYKDI 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++  +     G+L + + N     +   G+   LT RE E L 
Sbjct: 110 DPDALAGAIRSVHAGHILLQPEV---AGVLLSQEEN-----NSGQGRGGSLTEREREVLG 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 162 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 211


>gi|254392737|ref|ZP_05007910.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294811849|ref|ZP_06770492.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440412|ref|ZP_08215146.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706397|gb|EDY52209.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324448|gb|EFG06091.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 214

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 16/170 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D     L+R  EL  P        F      I       + Y     
Sbjct: 52  PDIVLMDVKMPGTDG-IEALRRLRELANPARVLVVTSFTEQRTVIPALRAGASGYVYKDI 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++  +      LLA       +      G+   LT RE E L 
Sbjct: 111 DPEALAGAIRSVHAGHVLLQPE--VAGALLAQ------EEQGGGTGRGSTLTEREREVLG 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 163 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212


>gi|307301502|ref|ZP_07581262.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|306903559|gb|EFN34147.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 305

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            +     L    A    S D    + F LT RE E L WI++GK++ +I  ILG+S  TV
Sbjct: 216 AIGANEYLFRLTAENGMSDDETLRQHFRLTQRESEVLLWIAKGKSNRDIGEILGLSARTV 275

Query: 218 NNYIASIMRKTATKTRSGAIAYAVR--NNI 245
             ++  I  K   + R+ A   A +  + I
Sbjct: 276 TKHLEQIYVKLGVENRASAAVKATQVLHGI 305


>gi|167566108|ref|ZP_02359024.1| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Burkholderia
           oklahomensis EO147]
          Length = 236

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 17/232 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +DLL  +     +      +   T  +G  +F           K   ++ S++P      
Sbjct: 6   TDLLLSITQKSTSSEIFSSLEKYTRELGFDNFSYGFCHPIPFTKPRIVILSNYPERWRGR 65

Query: 90  MALSEKDKYYNVLQRPTELFCPVF-HTLPENITP-------PAGMDNRYCSLTFDVARIR 141
            +          +        P     LP +            G+   +     D     
Sbjct: 66  YSELGYVNIDPTVLHGRNSQSPFTWSELPTSDVRSFWDEANAHGLVVGWAKSILDSD-GG 124

Query: 142 IGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVECL 194
           +G++ L      +    L    L       L     +     ++    D +L+ REVE L
Sbjct: 125 LGMLTLARSNEELCGKELAAKNLRMCLLADLTHMVLSDAYRKEMTASAD-KLSAREVEIL 183

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKT+DEI  IL IS +TV  +  + + K     ++ A+A A    ++
Sbjct: 184 RWHADGKTADEIGRILSISIDTVKFHTKNAVVKLGASNKTAAVARAAIMGLL 235


>gi|145860182|dbj|BAF57040.1| DNA-binding response regulator [Streptococcus bovis]
          Length = 214

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +   +    L  E K D +V      DLV    +S  +    +L+   E    V
Sbjct: 30  VEVVGEAGNGIEGIKLALELKPDVVV-----MDLVMP-EMSGVEATLKLLKEWKEAKILV 83

Query: 113 FHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
             +  +N             Y   T   A I   +  +      I  +            
Sbjct: 84  LTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIQKVARGELAIETE-----------V 132

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
               K++D       +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K  
Sbjct: 133 DKKIKAHDKQPELHEDLTARERDILRLLAKGYDNQTIADELFISLKTVKTHVSNILAKLE 192

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A+ YA ++++V
Sbjct: 193 VDDRTQAVVYAFKHHLV 209


>gi|320333891|ref|YP_004170602.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755180|gb|ADV66937.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 228

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          + R   L   V  +  G   L P               +A     
Sbjct: 102 VFALLEAGAAGYLLKNAREDELLGAVRAVAAGESALHPS--------------VARKVLE 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F +       +  L+ RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    
Sbjct: 148 RFSTNQTPSPPEETLSPRELEVLRIAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVG 207

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A+ Y ++   +
Sbjct: 208 SRTEAVLYGIKRGWI 222


>gi|262164556|ref|ZP_06032294.1| transcriptional regulator LuxR family [Vibrio mimicus VM223]
 gi|262026936|gb|EEY45603.1| transcriptional regulator LuxR family [Vibrio mimicus VM223]
          Length = 224

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+   
Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELG 220


>gi|262173265|ref|ZP_06040942.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
 gi|261890623|gb|EEY36610.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
          Length = 224

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+   
Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELG 220


>gi|258622070|ref|ZP_05717096.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585394|gb|EEW10117.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 224

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+   
Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELG 220


>gi|258626786|ref|ZP_05721594.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580926|gb|EEW05867.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 224

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+   
Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELG 220


>gi|108805405|ref|YP_645342.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766648|gb|ABG05530.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 207

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 18/185 (9%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP----VFHTLPENITP 122
           +    +++  + S   P  ++  + +        VL+R   L  P    VF    +    
Sbjct: 34  EAGDGEEVLRLASGLRPDVVLLDLEMPGTGG-VEVLRRLRGLDDPPKVVVFTAYDDERLL 92

Query: 123 PAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            A  +  R C L           +     G  ++   +          A + K      G
Sbjct: 93  EALREGARGCLLKGASRTEIFDAVRTVHAGGSVIPPEI---------TARVLKEM---RG 140

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE+E L  ++ G T+ E+A  L IS  TV  +++S++ K   + R+ A+A A 
Sbjct: 141 ESEPLTPRELEVLRLVARGLTNREVARALFISERTVKFHVSSLLAKLRAENRTQAVAIAR 200

Query: 242 RNNIV 246
              ++
Sbjct: 201 ERGLL 205


>gi|328881486|emb|CCA54725.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 214

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 13/155 (8%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           E  K    L  P ++      T    + P        Y     D   +   +  +     
Sbjct: 68  EALKRLRALDNPAKVLVVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHV 127

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVIL 210
           ++  +              +    D H G  +   LT RE E L  I++G+++ EIA  L
Sbjct: 128 LLQPE----------VAGALLAQEDSHGGTGRGSTLTEREREVLGLIADGRSNREIARAL 177

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 178 VLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212


>gi|328542134|ref|YP_004302243.1| LuxR family transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326411884|gb|ADZ68947.1| LuxR family transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 217

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F        P  G       ++         L  +         + +  I L+    A  
Sbjct: 86  FGLGEGLGIPVHGAYGSLAMISMVAEEETRRLARMLHHHG----EDVHLISLIFHNLARE 141

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             +          L+ RE ECL W++ GKT  EI++ILGIS  TV  +  +I  K  T +
Sbjct: 142 LMALGRCGRSPISLSPRERECLIWLANGKTRWEISLILGISEETVKYHFKNIRAKFGTYS 201

Query: 233 RSGAIAYAVRNNIV 246
           R   I  AVR  ++
Sbjct: 202 RHEIIIQAVRLGLI 215


>gi|86358918|ref|YP_470810.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86283020|gb|ABC92083.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 305

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 140 IRIGLMLLFPKGRIILR-DRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            R G++ +   G+  L+   L  IG    L    A   +S D    + F LT RE E L 
Sbjct: 194 GRDGIISITHAGQAALQLAFLGSIGPDEYLFRLTAASQRSDDEMLRQRFALTQRESEVLL 253

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 254 WIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|309779188|ref|ZP_07673951.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
 gi|308921992|gb|EFP67626.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
          Length = 201

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           L++  Q  + +    H      +L+ RE E L W + GKTS EIA ILG+S+ TV+ ++ 
Sbjct: 116 LISIVQTRLARRPRTHTAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +   K    TR  A+  A  + I+
Sbjct: 176 NAREKLGVATRIEAVVRASSSGII 199


>gi|116873879|ref|YP_850660.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742757|emb|CAK21881.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 228

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 50/133 (37%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          +     L   V  +  G   + P+  I L      +      Q  
Sbjct: 91  VTEALRAGAVGYLLKEMDAQELVEAVKIVENGGAYIHPRVAIKLIREYRHLASTNTSQGV 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++GK++  I   L IS  TV N+++SI++K    
Sbjct: 151 YGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVN 210

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A+++ 
Sbjct: 211 DRTQAVVTAIKHG 223


>gi|121606516|ref|YP_983845.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595485|gb|ABM38924.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 292

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 23/240 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V ++L  +D   +  ++H         R+  L    S       L         +LV 
Sbjct: 75  QPVRVLLVDDDPHMSRVIAHELLGD---LRINLLGQGCSVREG-RRLISQNEFD-VMLVD 129

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +L               F+L+  M          V+    E      H      T    
Sbjct: 130 LNLGDGSG----------FELIEYMKAVRPMAEAVVISS-MEDAQHALHAFELGATGYLV 178

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
            ++ + +    + ++  G   + P     L  +          QAN+ +   V+ GKD +
Sbjct: 179 KNSWFGNFPQAILQVVNGGASITPNLARRLLSKFEPP------QANV-EPLPVNQGKDNK 231

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G +S EI   L IS  T N +I +I RK   + R+ A+++A  + +
Sbjct: 232 LSEREQQVLKLVASGHSSTEIGARLVISWQTANTHIKNIYRKLNVRNRAQAVSFAANHGL 291


>gi|187928756|ref|YP_001899243.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187930011|ref|YP_001900498.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187725646|gb|ACD26811.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|187726901|gb|ACD28066.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 201

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           L++  Q  + +    H      +L+ REVE L W + GKTS EIA ILG+S+ TV+ ++ 
Sbjct: 116 LMSIVQTRLARRPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +   K    TR  A+  A  + I+
Sbjct: 176 NAREKLGVATRIEAVVRASSSGII 199


>gi|158312391|ref|YP_001504899.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158107796|gb|ABW09993.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 219

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 3/144 (2%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            RP  L    F          A   + +        ++  G+ ++     ++        
Sbjct: 72  PRPRVLVLTTFDVDKVVEDALAAGADGFLLKRATPEQLIDGIRVVAGGDALVAPAVTRR- 130

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            LL           ++    D +LT RE E L  ++EG+++ EIA +L +S  TV  ++ 
Sbjct: 131 -LLVTLARRRVPDRELLTRAD-QLTDREAEVLRALAEGRSNTEIAAVLNLSVETVRTHVK 188

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+ K   + R+ A+ +A R   V
Sbjct: 189 RILSKLGVRDRTQAVVWAYRAGFV 212


>gi|325293769|ref|YP_004279633.1| two-component response regulator protein [Agrobacterium sp. H13-3]
 gi|325061622|gb|ADY65313.1| putative two-component response regulator protein [Agrobacterium
           sp. H13-3]
          Length = 309

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 4/129 (3%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMF 173
           + +       + + +    V   R   + +   GR  L+      +     L    A   
Sbjct: 176 DGLEIVVAHISGWLADRTTVDSARDAPLTITEAGRPALQLSFLGAMGPDEYLFRLTAANE 235

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS D      F LT RE E L WI++GK++ +I  ILG+S  TVN ++  I  K   + R
Sbjct: 236 KSDDHLLKDHFALTTRESEVLLWIAKGKSNRDIGDILGLSARTVNKHLEQIYVKLGVENR 295

Query: 234 SGAIAYAVR 242
           + A   A  
Sbjct: 296 ASAAVKAAH 304


>gi|72162890|ref|YP_290547.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916622|gb|AAZ56524.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 242

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +    T     +     L   V  +  G   + P    +    + E   LA      
Sbjct: 101 FEAIKAGATGYLLKEISVVELPEAVRAVCKGQSFINPS---MATKLINEFAALA----RK 153

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K       K   LT RE E L  ++ G  + +IA  L IS NTV N++ +I+ K    +
Sbjct: 154 GKDRRSQPTKPPRLTERETEVLRLVARGLNNRDIADRLYISDNTVKNHVRNILEKLQLHS 213

Query: 233 RSGAIAYAVRNNIV 246
           R+ A  YA+R   +
Sbjct: 214 RTEAAVYAIREKFL 227


>gi|298246526|ref|ZP_06970332.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554007|gb|EFH87872.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 228

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 1/135 (0%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRI-GLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            H                  L    +R  +   +        +L+  L    L     A 
Sbjct: 89  MHADDPEFLLACLQTGMVTCLPLHASRTTLHQALTASVHKETLLQHALVRSLLERIEGAT 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       +  +LT RE+E LT ++ G+ + EIA  L IS  TV  ++A+I  K    
Sbjct: 149 PVEERSSAQAQRVDLTERELEVLTCVARGQRNKEIATYLSISEPTVKTHLANIYFKLQVD 208

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A+A A++  ++
Sbjct: 209 SRASAVAVAMKRGLL 223


>gi|297579900|ref|ZP_06941827.1| predicted protein [Vibrio cholerae RC385]
 gi|297535546|gb|EFH74380.1| predicted protein [Vibrio cholerae RC385]
          Length = 224

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+   
Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELG 220


>gi|148655770|ref|YP_001275975.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148567880|gb|ABQ90025.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 254

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 7/146 (4%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   V+ +  +         + Y S   + A +   L  +     +I    L +  +   
Sbjct: 88  VVLSVYESDEQAFNALRAGASAYRSKDVNPAELAQVLRRVARGEYVINDVVLDDPKVAGR 147

Query: 168 YQA-------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
             +       ++    +V +     L+ RE+E L  I+ G ++ EIA  L IS  TV N+
Sbjct: 148 VLSQFRNLPQDLTNLPEVEFPLFTPLSDREIEVLERIAAGGSNREIAEALHISTQTVKNH 207

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           I+SI+RK +   R+ A+ YA+R   +
Sbjct: 208 ISSILRKLSLNDRTQAVLYALRRGWI 233


>gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 307

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-DRLWEIGL---LAAYQANMF 173
           + +         + S    +   R  L+ +   G+  L+   L  IG    L    A   
Sbjct: 174 DGLELVVKHIATFMSERARLGPARDNLVSISNGGQAALQFSFLGAIGADEYLFRLTATNQ 233

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++ D    + F LT RE E L WI++GK++ +I  ILG+S  TVN ++  I  K   + R
Sbjct: 234 RADDGVLRQHFSLTQRESEVLLWIAKGKSNRDIGEILGLSARTVNKHLEQIYVKLGVENR 293

Query: 234 SGAIAYAVR 242
           + A   A  
Sbjct: 294 ASAAVKAAH 302


>gi|269795278|ref|YP_003314733.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097463|gb|ACZ21899.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 216

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 61/171 (35%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +    + +    L+    L    F   P+ +       + + S   
Sbjct: 46  DVVLMDLRMPVLDGIEAIRRLRSMPDLESLRILVLTTFDDDPDVLAALQAGADGFLSKVA 105

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   +  +     ++ +     +    A      +   V   +   LT RE   + 
Sbjct: 106 EPAELVDAVRGVAAGDVMLSQTATRAVVQHVARAPRPAEPDPVLAQQVASLTPRERTIVK 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++G  + +I+  L IS +TV  ++   M K   + R+  +  A R  +V
Sbjct: 166 QAAQGLDNLQISRQLHISPHTVKTHLGHAMAKLDVRDRTQMVVVAFRAGLV 216


>gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 233

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 24/216 (11%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           ++  Y+  S F +      QE     ++  + P  L+  + + + D Y     V +    
Sbjct: 20  SVQAYLEDSDFEVRVASNAQEGW--ELLQQEIPNVLISDIMMPQVDGYQFLKQVREDARF 77

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD----- 157
              PV          + I       + Y    FD   +   +  L  +      D     
Sbjct: 78  QALPVVFLTARGMTSDRIQGYQAGADAYLPKPFDPEELVAIVTSLIERRAAQAPDASATP 137

Query: 158 -------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                  ++ EI  L   + +M K  +   G   + T RE + L  ++EG  + EIA  L
Sbjct: 138 DIATMARQIEEIKALLTQRGSMIKQNNS--GIKIDFTPREQDVLNLVAEGLMNKEIASRL 195

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +   V  Y++ +  KT T +R+  + YA+ N +V
Sbjct: 196 GTTVRNVEKYVSRLFGKTGTNSRTELVRYALENGLV 231


>gi|300863692|ref|ZP_07108626.1| Two component transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
 gi|300338324|emb|CBN53772.1| Two component transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
          Length = 224

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 81/209 (38%), Gaps = 15/209 (7%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTE 107
           ++ +Y+    + ++     ++     +V    P  +V  + + E D Y  V +   RP  
Sbjct: 17  SIGDYLEICGYSVITAQNGKQAL--GLVEEYQPHLIVTDVTMPEMDGYEFVRRVRLRPAF 74

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV          E I       + Y    F++  +   +  L  +  +I +      
Sbjct: 75  RLLPVIFLTERTSTQERIRGYQLGADNYLRKPFELEELGAVIRSLLDRYALIAQAGGQGS 134

Query: 163 GLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           G      +            D       LT RE + L  +++G ++ +I   L +S  TV
Sbjct: 135 GGAGERGSEGAGERGGGGDSDITEKSLSLTQREKDVLQLLTDGLSNAQIGDRLHLSHRTV 194

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             Y++S++RK+    R+  + +A+ +++V
Sbjct: 195 EKYVSSLLRKSDRTNRAELVRFAMEHHLV 223


>gi|256397512|ref|YP_003119076.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256363738|gb|ACU77235.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 239

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 2/144 (1%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +RP  L    F       T      + +         +   +  +     ++        
Sbjct: 93  ERPRVLMLTTFDLDEYAFTALKAGASGFLLKDVPPPDLLAAIRAVHSGEAVVAPSTTRR- 151

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            LL  +   +    +    +   LT RE E L  +++G ++ EIA  L +S  TV  ++ 
Sbjct: 152 -LLDKFAPMLPSESEPAPPELTVLTDREHEVLLLVAQGMSNAEIAGKLFLSEATVKTHVG 210

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+ K   + R  A+  A    +V
Sbjct: 211 RILMKLGLRDRVQAVVLAYETGLV 234


>gi|302518272|ref|ZP_07270614.1| two component response regulator [Streptomyces sp. SPB78]
 gi|318062320|ref|ZP_07981041.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079406|ref|ZP_07986738.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333028052|ref|ZP_08456116.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|302427167|gb|EFK98982.1| two component response regulator [Streptomyces sp. SPB78]
 gi|332747904|gb|EGJ78345.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 226

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 16/160 (10%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +R +     +    ++   TE    V   L          D    +L   +  +  G 
Sbjct: 80  EALRTLRALGNEVRVLIVTSFTEQRT-VVPALRAGAAGYVYKDIDPEALAGAIRSVHAGH 138

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +LL P+            G+L A +    +       +   LT RE E L  I++G+++ 
Sbjct: 139 VLLQPEV----------AGMLLAQEEQAPQQP-----RGGSLTEREREVLGLIADGRSNR 183

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 184 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 223


>gi|261407454|ref|YP_003243695.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329927546|ref|ZP_08281731.1| putative nitrate/nitrite response regulator protein NarL
           [Paenibacillus sp. HGF5]
 gi|261283917|gb|ACX65888.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328938415|gb|EGG34804.1| putative nitrate/nitrite response regulator protein NarL
           [Paenibacillus sp. HGF5]
          Length = 219

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 10/161 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           ++   +   +    V  +   +   +     +       +      Y     +       
Sbjct: 59  IQMPGMGGLEATKRVKDKFPYVKIVMVTVSDDIAHLFDALKRGAQGYLLKNLNPESWHEY 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +      + R+       LA      F  YD        LT RE E L  ++EG ++
Sbjct: 119 LKAIAVDEAPVSRE-------LAFRILKEFSQYDKPDPSKSPLTAREKEILGLVAEGLSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +I+  L IS NTV N++ +I++K   + R     YA    
Sbjct: 172 RDISSDLCISENTVKNHLKNILQKLHLENRVQLTRYAFEQG 212


>gi|251799449|ref|YP_003014180.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547075|gb|ACT04094.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 220

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   L   +      D    ++   +  +  G  +L      +L     +I  L   +++
Sbjct: 89  IIKVLENGVHGYLLKDMPSEAIIGAIRTVYNGGTVLQHDITSMLIKEFVKITDLNPDKSH 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + +    K  +LT RE E L  + +G  + EIA  L ++  TV N++++++ K   +
Sbjct: 149 PLGAQEPAELK--QLTEREKEVLALLGQGLNNKEIAGSLFLTEGTVKNHVSNVIAKLGLR 206

Query: 232 TRSGAIAYAVRN 243
            R+ A  YAVR+
Sbjct: 207 DRTQAAIYAVRH 218


>gi|167034704|ref|YP_001669935.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861192|gb|ABY99599.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1]
          Length = 82

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N   S          LT RE + L W + GK+S EI  IL    +TVN ++++I+RK   
Sbjct: 4   NARYSQQPPADAPVRLTPRERQVLLWCAYGKSSWEIGRILDCKESTVNFHVSNILRKFDV 63

Query: 231 KTRSGAIAYAVRNNIV 246
            TR  A+  A+R  ++
Sbjct: 64  PTRVVAVIKAIRYGLL 79


>gi|148658406|ref|YP_001278611.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570516|gb|ABQ92661.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 246

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 165 LAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +AA   N F+   V          L+ RE++ L  ++ G T+  IA  L IS  TV N+I
Sbjct: 152 VAAQVLNAFRQMAVDEETQNVYSPLSPRELQVLELVAAGHTNKAIAQSLDISNQTVKNHI 211

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           +SI+RK A   R+ A+ YA+R   +
Sbjct: 212 SSILRKLAVNDRTQAVVYAMRRGWI 236


>gi|257869647|ref|ZP_05649300.1| regulatory protein [Enterococcus gallinarum EG2]
 gi|257803811|gb|EEV32633.1| regulatory protein [Enterococcus gallinarum EG2]
          Length = 209

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 21/203 (10%)

Query: 55  YVGASHFLLVRWDL--FQEQKLDSI----VSSDWPFDLVRCMALSEKDK----YYNVLQR 104
            +G S +L ++ D+    E +   I      S  P  ++  + + E D        +   
Sbjct: 14  RLGVSSYLSIQEDIEVIGEAENGKIGYEKALSLRPDVILMDLVMDEMDGIEATKAILADW 73

Query: 105 PTELFCPVFHTLPENITPPA--GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           P      V   + +    PA       Y   T     I   +       R++  +   ++
Sbjct: 74  PEAKIIIVTSFIDDEKVYPAIEAGAAGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKM 133

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                    M +  +       +LT RE E L  I+EGK++ EIA  L I+  TV  +++
Sbjct: 134 ---------MDRLTNRTPILHDDLTNREKEVLLLIAEGKSNQEIADELFITLKTVKTHVS 184

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           +I+ K   + R+ A  YA ++ +
Sbjct: 185 NILSKLEVEDRTQATIYAFKHGL 207


>gi|269839470|ref|YP_003324162.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791200|gb|ACZ43340.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 188

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 116 LPENITPPAGMDNRYCSL--TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---YQA 170
            PE   PP G++     L    +   +  G  + F      + + +  +  +A+     A
Sbjct: 51  APEGGHPP-GVEQGLIILGDRLEADLLGSGHPVGFLPRDASVEEVIAAVRAVASGLSVVA 109

Query: 171 NMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
               +  V    ++  LT REVE L  +++G  +  IA  LGIS +TV  ++ SI+ K  
Sbjct: 110 PTLAARIVRREPEEVPLTQREVEVLALMADGLPNKAIAARLGISEHTVKFHVGSILAKLG 169

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R+ A+A A R  ++
Sbjct: 170 ASSRAEAVAIAARKGLL 186


>gi|29833019|ref|NP_827653.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610140|dbj|BAC74188.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 213

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 16/169 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D   + L+R  EL  P        F      +         Y     
Sbjct: 51  PDVVLMDVKMPGMDG-IDALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++  +      LL+  +AN  +      G+   LT RE E L 
Sbjct: 110 DPDALAGAIRSVHAGHILLQPE--VAGALLSQEEANSGQ------GRGGSLTEREREVLG 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 162 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210


>gi|290581010|ref|YP_003485402.1| putative response regulator [Streptococcus mutans NN2025]
 gi|254997909|dbj|BAH88510.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 213

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 10/177 (5%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           Q +D +     P  +V  + + E D     L+   +        L       + +DN   
Sbjct: 40  QGID-LALKLKPDVVVMDLVMPEMDGVEATLELLKDWKEAKILVLT------SYLDNEKI 92

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGR 189
               +    +  ++       I+   +    G LA       K  D H   D    LT R
Sbjct: 93  YPVIEAG-AKGYMLKTSSAAEILNAIQKVAKGDLAIETEVDKKIKDHHNNPDLHEDLTAR 151

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 152 ERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVYAFQHHLV 208


>gi|170700574|ref|ZP_02891575.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134522|gb|EDT02849.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 240

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 11/169 (6%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--TLPENITPPAGM-DNRYCSLTFDV 137
           D             +      L  P        H   L   I+ P    D      +F  
Sbjct: 78  DPVHRAAFIYNSPYRWSDIPGLSEPERRVLGEAHDAGLTHGISIPIYEPDGSVLLFSFSG 137

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
              R+   L   + ++          LL   +                L+ R+ ECL W+
Sbjct: 138 PPHRVNTALNVRRAQL--------ASLLFHAEFQRLAPIPHVEPPTLRLSPRQQECLYWV 189

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +GKTS EI +I+GIS +TV+ +++  M+     +R+ A  +A    ++
Sbjct: 190 GQGKTSPEIGMIMGISHHTVDYHLSEAMKILNVNSRTKAAVFASTYGLI 238


>gi|296268760|ref|YP_003651392.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091547|gb|ADG87499.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 234

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +    T     D +   +   V  +  G  L+ P    +    + E   L+  +A  
Sbjct: 106 FEAIKAGATGYLLKDVQIDEVPDAVRGVYEGQSLINP---AMAAKLISEFQTLSRREAER 162

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE+E L  +++G  + EIA  L IS NTV N++ +I+ K    +
Sbjct: 163 PPQVPAPR-----LTEREMEVLRLVAKGMHNREIAKALFISENTVKNHVRNILDKLQLHS 217

Query: 233 RSGAIAYAVRNNIV 246
           R  A+ YAVR  ++
Sbjct: 218 RMEAVVYAVRERLL 231


>gi|229164821|ref|ZP_04292645.1| Response regulator receiver [Bacillus cereus R309803]
 gi|228618645|gb|EEK75647.1| Response regulator receiver [Bacillus cereus R309803]
          Length = 221

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 5/164 (3%)

Query: 87  VRCMALSEKDKYYNVLQRP---TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           ++   +S  +   N++ +      +    F      +         Y     +   +  G
Sbjct: 58  IQMPDISGIEATKNIMDKLPNTKVVLLTTFDVQQYVLDGIRAGAVGYILKDTETEEMLDG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     I               + +     D    +  E LT RE++ L  ++ GK 
Sbjct: 118 IRAMNRGAMIYNSTTANH-AFAQFLKYDNVPEEDSTANEYAEALTKREIDVLQLLAYGKQ 176

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA IL +S  TV  +I  I++K     R+ A   A+R  IV
Sbjct: 177 NHEIAKILCVSEGTVKTHIHKILQKLEVTDRTQAAVMAIRQKIV 220


>gi|170721041|ref|YP_001748729.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759044|gb|ACA72360.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 82

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           AN  +  D        LT RE + L W + GK+S EI  IL    +TVN ++ +I+RK  
Sbjct: 3   ANTQQIEDSQADTPIRLTPREQQVLLWCAYGKSSWEIGQILQCQESTVNFHVGNILRKFD 62

Query: 230 TKTRSGAIAYAVRNNIV 246
             TR  A+  A+R  ++
Sbjct: 63  VSTRVAAVIKAIRYGML 79


>gi|150395471|ref|YP_001325938.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150026986|gb|ABR59103.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 247

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 86/240 (35%), Gaps = 26/240 (10%)

Query: 19  RTSFVSHLPTRSDLLARMIPLD---------CTVSWTMRMYALTEYVGASHFLLVR--WD 67
           R +  + L TR   + R I              +    ++  +    G S   + R   D
Sbjct: 21  RAAQAAGLVTRLQAMQRQINARNFAVLRTNGRGLPAARKLTCVLHNWGTSCEEIARDLID 80

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            + E+ L  +  S  P            D         T  F P    L +   P +G  
Sbjct: 81  HYGEELLQHLDHSLLPVLW---------DGKGEHQTAETSDFGPFTRRLKDRKLPYSG-- 129

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFEL 186
               +L   +     G ++          +++ E+ G  A    ++    +    K   L
Sbjct: 130 ---IALPIRLGAQGNGYVVFAGSYIDASGEQIVELHGRSAQIMTDLLTFDEKRPLKAEAL 186

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+ CL    +G  S+EIA  +G+S +TVN Y+ +   K  +  R  AIA A+R   +
Sbjct: 187 SDREISCLQMAGDGHISEEIAEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 246


>gi|315304744|ref|ZP_07874927.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL
           F6-596]
 gi|313626888|gb|EFR95838.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL
           F6-596]
          Length = 228

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 51/133 (38%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          +     L   V  +  G   + P+  I L      +    A Q  
Sbjct: 91  VTEALRSGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNAAQGV 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++GK++  I   L IS  TV N+++SI++K    
Sbjct: 151 YGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVN 210

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A+++ 
Sbjct: 211 DRTQAVVTAIKHG 223


>gi|134291839|ref|YP_001115608.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135028|gb|ABO59353.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 239

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  LLA M   +        +      +G  +   V        +  S+  +++P     
Sbjct: 5   RESLLASMEQAETASDAFDGLAPAVRALGFEYHAYVLRVTIPITRPASMEWNNFPQAWRA 64

Query: 89  CMALSEKDKYYNVL------QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             A         VL       RP     P+                   S T    R  +
Sbjct: 65  HYAQKRYQHADPVLHYGQACTRPMPWPGPLAGHDAFWRDAADFGLRHGWSQTLRDHRGAM 124

Query: 143 GLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFKS--YDVHWGKDFELTGREVECLT 195
           G   L   G  I  + L         L     A M      DV       L+ RE E L 
Sbjct: 125 GTFSLVRGGPPISPEELRRTEPEMIWLCQFVHATMSNLIVSDVMPSGAMRLSLREKEVLH 184

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKT+ E+A IL ++   V  +I + M K     ++ A   A    ++
Sbjct: 185 WTAEGKTAAEVAAILQLTERNVGFHIQNAMDKLDATNKTHATVKAAMLGLI 235


>gi|295836933|ref|ZP_06823866.1| nitrate/nitrite response regulator [Streptomyces sp. SPB74]
 gi|295826282|gb|EDY45818.2| nitrate/nitrite response regulator [Streptomyces sp. SPB74]
          Length = 264

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +      I         LL+ +++ + ++ +        LT 
Sbjct: 146 GYLLKEISTDEVATAIRAVADGQSQISPS--MASKLLSEFKSMIQRTDERRLVPAPRLTD 203

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE++ L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 204 REMDVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 261


>gi|323464084|gb|ADX76237.1| two-component response regulator [Staphylococcus pseudintermedius
           ED99]
          Length = 208

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFD 136
           P  ++  + + E +       + ++ T +   V  +  +     + M    + Y     D
Sbjct: 50  PELILVDLVMPEMNGITLIQKLKEQHTGIKILVLTSYVDEEHVMSAMQAGADGYEMKDVD 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +    ++I +D        A    +   +      K   L+ RE E L  
Sbjct: 110 PEALMTSIETVLQGDKVIHKD--------AQQVMDTVITKPHMLNK---LSKRETEVLKE 158

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N++V
Sbjct: 159 MAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENHLV 208


>gi|302344447|ref|YP_003808976.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301641060|gb|ADK86382.1| transcriptional regulator, LuxR family [Desulfarculus baarsii DSM
           2075]
          Length = 221

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELT 187
           Y           +  +        + R RL     GL  + +     +      ++  L+
Sbjct: 103 YPIFDEAGRVEYVLKIGFDVTDDRVSRRRLERYVEGLERSLRGRPALAAPPAEAEESGLS 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           GRE+E L  ++ G T++EIA  L IS +TV  ++ +I  K     R+ A   A R  +
Sbjct: 163 GREMEVLRLVASGMTNNEIARALCISPHTVKTHVGNIFNKLGVNDRAMAAVTAARMGL 220


>gi|302550470|ref|ZP_07302812.1| two component response regulator [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468088|gb|EFL31181.1| two component response regulator [Streptomyces viridochromogenes
           DSM 40736]
          Length = 213

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 16/170 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D   + L+R  EL  P        F      +         Y     
Sbjct: 51  PDVILMDVKMPGMDG-VDALRRLRELDNPARVLVVTSFTEQRTVVPALRAGAAGYVYKDV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++  +      LL+  +AN   +      +   LT RE E L 
Sbjct: 110 DPDALAGAIRSVHAGHILLQPE--VADALLSQEEANSGPA------RAGSLTDREREVLG 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 162 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGV 211


>gi|219849441|ref|YP_002463874.1| LuxR family transcriptional regulator [Chloroflexus aggregans DSM
           9485]
 gi|219543700|gb|ACL25438.1| transcriptional regulator, LuxR family [Chloroflexus aggregans DSM
           9485]
          Length = 508

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  ++ RE E L  ++ G T+ +IAV L IS NTV  ++ +I  K   ++R+ A  YA+
Sbjct: 3   NESPISEREREILRLVATGATNQQIAVALNISVNTVKVHLRNIFAKIGVESRTEATVYAI 62

Query: 242 RNNIV 246
           R  IV
Sbjct: 63  RTGIV 67


>gi|24378972|ref|NP_720927.1| putative response regulator [Streptococcus mutans UA159]
 gi|24376861|gb|AAN58233.1|AE014894_10 putative response regulator [Streptococcus mutans UA159]
          Length = 215

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 10/177 (5%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           Q +D +     P  +V  + + E D     L+   +        L       + +DN   
Sbjct: 42  QGID-LALKLKPDVVVMDLVMPEMDGVEATLELLKDWKEAKILVLT------SYLDNEKI 94

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGR 189
               +    +  ++       I+   +    G LA       K  D H   D    LT R
Sbjct: 95  YPVIEAG-AKGYMLKTSSAAEILNAIQKVAKGDLAIETEVDKKIKDHHNNPDLHEDLTAR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 154 ERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVYAFQHHLV 210


>gi|331657961|ref|ZP_08358923.1| regulatory protein SdiA [Escherichia coli TA206]
 gi|331056209|gb|EGI28218.1| regulatory protein SdiA [Escherichia coli TA206]
          Length = 87

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 42/80 (52%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +  A M  + ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +
Sbjct: 8   SLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQK 67

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K     ++    YA    ++
Sbjct: 68  KINAPNKTQVACYAAATGLI 87


>gi|297195179|ref|ZP_06912577.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722161|gb|EDY66069.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 214

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 16/169 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D   + L++  EL  P        F      +       + Y     
Sbjct: 52  PDVVLMDVKMPGMDG-IDALRKLRELANPAKVLVVTSFTEQRTVVPALRAGASGYVYKDV 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++ ++       +A    +     +   G+   LT RE E L 
Sbjct: 111 DPDALAGAIRSVHAGHVLLQQE-------IAGALLSDGDPGN-GTGRGNSLTEREREVLG 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 163 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHG 211


>gi|283782494|ref|YP_003373249.1| two component LuxR family transcriptional regulator [Pirellula
           staleyi DSM 6068]
 gi|283440947|gb|ADB19389.1| two component transcriptional regulator, LuxR family [Pirellula
           staleyi DSM 6068]
          Length = 210

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 4/160 (2%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR       +    +L R  +    +F            +           +     L  
Sbjct: 55  VRLPETDGLEALERILDRSPQTKVVMFTAYDNPTYIARAVALGAAGFLMKGSTKADVLSA 114

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +      +  +    +G +    A    +YD    ++  LT REV+ L  ++ G ++ EI
Sbjct: 115 ITRAHTGLPPENESLMGRVRNTMARRRPTYD----EEIPLTNREVQVLRHVALGLSNREI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L IS  TV  ++ +I+RK     R+ A  +AV+  +V
Sbjct: 171 GRSLDISIETVKEHVQNILRKLEAGDRTEAAVWAVKKGLV 210


>gi|83589824|ref|YP_429833.1| two component LuxR family transcriptional regulator [Moorella
           thermoacetica ATCC 39073]
 gi|83572738|gb|ABC19290.1| two component transcriptional regulator, LuxR family [Moorella
           thermoacetica ATCC 39073]
          Length = 222

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  +S GK++ EIA  L IS  TV N++  I  K     R+ A  YA+++
Sbjct: 155 IPLTAREREILIHVSLGKSNREIARELFISEKTVKNHLTHIFHKIGVSDRTQAALYALKH 214

Query: 244 NI 245
            +
Sbjct: 215 GL 216


>gi|15889689|ref|NP_355370.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157595|gb|AAK88155.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 309

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMF 173
           + +       + +      V   R   + +   GR  L+      +     L    A   
Sbjct: 176 DGLEIVVAHISGWLKERATVDAARDAPLTITEAGRPALQLSFLGAMGPDEYLFRLTAANE 235

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS D      F LT RE E L WI++GK++ +I  ILG+S  TVN ++  I  K   + R
Sbjct: 236 KSDDHLLKSHFALTTRESEVLLWIAKGKSNRDIGDILGLSARTVNKHLEQIYVKLGVENR 295

Query: 234 SGAIAYAVR 242
           + A   A  
Sbjct: 296 ASAAVKAAH 304


>gi|302542030|ref|ZP_07294372.1| two-component system, regulatory protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459648|gb|EFL22741.1| two-component system, regulatory protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 229

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 10/188 (5%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITP-- 122
               ++   +V+   P  ++  + +   D      +   E       V  T  ++ +   
Sbjct: 29  AGDGEEALRLVAELAPDVVLMDLRMPRCDGVEATRRVCAEHPGTQVVVLTTYADDDSLFP 88

Query: 123 -PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDV 178
                   Y +   D   I   +  +      +      RL E               + 
Sbjct: 89  ALRAGARGYLTKDADADEILRAVEGVMSGDAGLSPQVQRRLLEWLAERGGSDRDEPERET 148

Query: 179 HWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             G     LT RE E L  ++ G ++ EIA  L I+  TV  +I ++  KTA + R+ A+
Sbjct: 149 AAGPLPDGLTPREAEVLALVAGGLSNPEIARRLMIAPATVKTHINNLFAKTAVRDRAQAV 208

Query: 238 AYAVRNNI 245
            YA R+ I
Sbjct: 209 RYAYRHGI 216


>gi|326326038|ref|YP_004250847.1| putative transcriptional activator protein solR-LuxR [Vibrio
           nigripulchritudo]
 gi|323669089|emb|CBJ93133.1| Putative transcriptional activator protein solR-LuxR [Vibrio
           nigripulchritudo]
          Length = 232

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W +EGKT+ E ++IL IS  TV  +I + ++K  T  ++ A+  AV   +
Sbjct: 171 LTPREIEILKWSAEGKTASETSMILSISERTVTFHITNAVKKLNTCNKTSAVIKAVTLGL 230

Query: 246 V 246
           V
Sbjct: 231 V 231


>gi|81428980|ref|YP_395980.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610622|emb|CAI55673.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 199

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 80/205 (39%), Gaps = 24/205 (11%)

Query: 55  YVGASHFLLVRWDL--------FQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQ 103
            +G S +L V+ DL         QE    ++     P  ++  + + E D       +L+
Sbjct: 3   RLGISTYLGVQDDLEVVDQAVNGQEGVEKALALR--PDAILMDLVMPEMDGIEATKTILK 60

Query: 104 RPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
              +    +  +  ++      ++     Y   T     I   +        ++  +   
Sbjct: 61  AWPQAKIIILTSFIDDEKVYPAIEAGAASYILKTSTAGEIANTIRKTTAGQSVLEPEVTN 120

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           ++         M    +    +D  LT RE E L  +++G+++ EIA  L I+  TV  +
Sbjct: 121 KM------MNRMTHQAETKLYED--LTNREREVLGLVAKGRSNQEIADELFITLKTVKTH 172

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
           +++I+ K     R+ A  YA+++ +
Sbjct: 173 VSNILAKLQVDDRTQAAIYAIKHQL 197


>gi|218663810|ref|ZP_03519740.1| hypothetical protein RetlI_33506 [Rhizobium etli IE4771]
          Length = 253

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           D Y    +R        F        P  G D  +   +F              + R I 
Sbjct: 110 DVYTTEGERRIFDEAAAFGLRSGITVPLHGPDGSFAITSFAQHSSG------QFQNRAIS 163

Query: 156 RDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             +L  +     + + + K  D +   +   L+GRE EC+ W++ GK+S +I  ILGIS+
Sbjct: 164 YLQLAALH----FHSRVGKFADSNCIDEGAVLSGRERECIAWVARGKSSSDIGTILGISK 219

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           NTV+ +I ++MRK  T +R+ A   A    I+
Sbjct: 220 NTVDFHIKNVMRKLDTASRTVAAITAATLGII 251


>gi|330879513|gb|EGH13662.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 254

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L 
Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  T+  ++ S M+K   K R  A+  AV   ++
Sbjct: 218 RSVATITLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252


>gi|167589289|ref|ZP_02381677.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 229

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 70/184 (38%), Gaps = 16/184 (8%)

Query: 78  VSSDWPFDLVRCM------ALSEKDKYYNVLQRPTELFCPVFHTLPENI--TPPAGMDNR 129
           + +++P    +         +    K+    Q P       F   P+        G+ + 
Sbjct: 46  MLNNYPEAWQKRYQEARYVDIDPTVKHARRSQAPLVWSDACFAATPQLWCEAQAHGLRHG 105

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFKSYDVHWGKDF 184
           +    FD      G++ L      I    L +       L++     M          D 
Sbjct: 106 WTQSAFDSC-GVSGMLTLARSNGPITPAELEQNEFKMRWLVSTAHLAMTGKLLPKLAPDT 164

Query: 185 E--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           E  LT REVE L W ++GKTS EI+ IL IS +TVN ++ + + K     ++ A+  A  
Sbjct: 165 ERGLTDREVEVLKWAADGKTSGEISTILVISVDTVNFHVKNAVSKLKAANKTSAVVRATM 224

Query: 243 NNIV 246
             ++
Sbjct: 225 LGLL 228


>gi|298247008|ref|ZP_06970813.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297549667|gb|EFH83533.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 644

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 43/78 (55%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q               +L+ REVE L  ++ GK++ +I  IL IS  TV N+IASI  KT
Sbjct: 566 QVRRRARKPARSRLPLDLSEREVEVLRLVATGKSNRQIGEILVISERTVINHIASIFNKT 625

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+GA A+A+R+ +V
Sbjct: 626 GVSNRAGATAFAIRHKLV 643


>gi|283455737|ref|YP_003360301.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|283102371|gb|ADB09477.1| Two-component response regulator [Bifidobacterium dentium Bd1]
          Length = 251

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +R+ E GL       
Sbjct: 110 VMAAINAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLT 169

Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  S D    +         ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 170 IPASADTAPSRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHI 229

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 230 LSKINARDRVQAVVFAYENHLV 251


>gi|229822282|ref|YP_002883808.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568195|gb|ACQ82046.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 216

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 11/220 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +D        +  L E +     ++   D      L ++   D P  ++  + +
Sbjct: 1   MIRLLVVDDQTLVRQGIRGLLE-LAPDVDVVAEAD-DGLAGLAAVREHD-PDVVLLDLRM 57

Query: 93  SEKDK-YYNVLQRPTELFCPV-----FHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              D  +     R  EL  PV     F      +   A     Y      +  +   +  
Sbjct: 58  PRHDGLWLLEALRAGELDVPVLVLTTFDDDELALAAIAAGARGYLLKDVTLDSLVDAVRT 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L   G ++       +  L A +A      D   G   ELT RE+E L  ++ G ++ EI
Sbjct: 118 LAGGGTLVQPAITERV--LRAVRAGSVPLDDAAAGDVQELTSRELEILRLLAAGYSNREI 175

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L ++  TV N++++++ K  T+ R+ A+  A+ + ++
Sbjct: 176 AEALHLAEGTVKNHVSTVLLKLGTRDRTRAVLRALHHGLL 215


>gi|153832308|ref|ZP_01984975.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
 gi|148871619|gb|EDL70474.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
          Length = 217

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 10/181 (5%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           V     Q++   +IV S  P      M LSE +     +    E    V       +T  
Sbjct: 44  VDLPPHQDEHYVAIVDSSLPDLSEVKMTLSELEHVDATILVNAEPNLGV----ESLLTWS 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGK 182
                 Y    FD  ++  GL  +      + RD L     L  Y  N+  +  ++    
Sbjct: 100 NLKGLFYFEDDFD--KVIRGLKGILSGENWLSRDILNR---LVGYLVNLNHTVTELDTKL 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ LT + +G ++ +IA  L +S +TV +++ SI RK   K R  AIA+A R
Sbjct: 155 EIELTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAIAWAKR 214

Query: 243 N 243
           N
Sbjct: 215 N 215


>gi|327190926|gb|EGE57980.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 305

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 137 VARIRIGLMLLFPKGRIILR-DRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192
           VA  R G++ +   G+  L+   L  IG    L    A   +S D    + F LT RE E
Sbjct: 191 VAAARDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEVLRQRFSLTQRESE 250

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 251 VLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|298246329|ref|ZP_06970135.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553810|gb|EFH87675.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 233

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 10/162 (6%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFH---TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
           +   +    + QR       VF    T    I       + Y         I   + L  
Sbjct: 73  MDGVEAIKQLRQRRQNARIIVFTAFDTDERIIHAIQAGADGYLLKGSPRDEIFKAIRLAM 132

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSD 204
             G ++    L    LL  +     +  +    +      ELT RE+E L  +++G  + 
Sbjct: 133 EGGSLLQP--LVASKLL-RHMGQRERENNYRTLQGIPRVEELTERELEVLRLLAQGMPNK 189

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  T   +++SIM K     R+ A+A A +  ++
Sbjct: 190 EIASHLVISERTAKFHVSSIMSKLGATNRTEAVALAAQRGLI 231


>gi|190893145|ref|YP_001979687.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190698424|gb|ACE92509.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 305

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 137 VARIRIGLMLLFPKGRIILR-DRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192
           VA  R G++ +   G+  L+   L  IG    L    A   +S D    + F LT RE E
Sbjct: 191 VAAARDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEVLRQRFSLTQRESE 250

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 251 VLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 231

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 17/187 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTL-----PENITPPAGMD 127
            I+  + P  ++  + + E D Y     +   P     PV          + I       
Sbjct: 43  EILQKNPPDLVISDIMMPEVDGYQFLKKLRDDPRYEAIPVVFLTARGMTTDRIQGYNAGC 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ---------ANMFKSYDV 178
           + Y S  FD   +   +  L  + +   +       L    Q          +       
Sbjct: 103 DAYLSKPFDPEELEAIVKNLLERRKATSQANTDASQLAEIAQDIREIKKKLGDSESLATT 162

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 ELT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + 
Sbjct: 163 PPPIKIELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRTELVR 222

Query: 239 YAVRNNI 245
           +A+++ +
Sbjct: 223 FALKHGL 229


>gi|282864347|ref|ZP_06273403.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560834|gb|EFB66380.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 223

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D           + E   A   L V  +     +    V +  P  ++  + 
Sbjct: 1   MAIRVLLVDDQPLLRTGFRMILE---AEGDLAVVGEAGDGLQAIDQVRALQPDVVLMDIR 57

Query: 92  LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   D               P ++       L E +            L    A   +  
Sbjct: 58  MPRMDGVEATRQITGPDRDGPAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPAHELVQA 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L   +    LL  Y  ++    +        LT REVE L  ++ G ++ 
Sbjct: 118 IRVVAAGEAMLAPSITRR-LLDKYADHLPSGEEPVPDALHTLTEREVEVLKLVARGLSNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 177 EIAADLFVSETTVKTHVGHVLTKLRLRDRVQAAVYAYESGLV 218


>gi|260892920|ref|YP_003239017.1| two component transcriptional regulator, LuxR family [Ammonifex
           degensii KC4]
 gi|260865061|gb|ACX52167.1| two component transcriptional regulator, LuxR family [Ammonifex
           degensii KC4]
          Length = 213

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 7/156 (4%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            M   E  +    L+    +     H   E              L    A   I  ++  
Sbjct: 61  DMGGVEACREIKRLRPSVAVVALTVHDQEEYCLAMLEAGAAGYVLKESSADQLIEAIVRA 120

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +G   L  RL      A      F   +   G    LT RE E L  ++ G ++ EIA 
Sbjct: 121 ARGEEYLSPRL------AGKMVKWFSRAESKRGL-CGLTPREKEILRLLASGLSNREIAR 173

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L +S  TV N++ SI +K     R+ A  +AV++ 
Sbjct: 174 RLYLSEKTVKNHLTSIFQKIGVSDRTQAALWAVKHG 209


>gi|319943176|ref|ZP_08017459.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
 gi|319743718|gb|EFV96122.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
          Length = 237

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           W   +     + + +S +    +   LT RE+E L W ++GK+S +IA IL +S+NTV+ 
Sbjct: 152 WLAQMTHTLLSRIIRSQNAARVR--HLTSREIEVLKWTADGKSSQDIADILTLSKNTVDF 209

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I + ++K     ++ A+  AV   ++
Sbjct: 210 HIKNTVQKLNVPNKTAAVVQAVLLGLI 236


>gi|171743289|ref|ZP_02919096.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC
           27678]
 gi|171278903|gb|EDT46564.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC
           27678]
          Length = 248

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +R+ E GL       
Sbjct: 107 VMAAINAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLT 166

Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  S D    +         ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 167 IPASADTAPSRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248


>gi|126652487|ref|ZP_01724659.1| DegU [Bacillus sp. B14905]
 gi|169826725|ref|YP_001696883.1| transcriptional regulatory protein degU [Lysinibacillus sphaericus
           C3-41]
 gi|126590758|gb|EAZ84873.1| DegU [Bacillus sp. B14905]
 gi|168991213|gb|ACA38753.1| Transcriptional regulatory protein degU (Protease production
           enhancer protein) [Lysinibacillus sphaericus C3-41]
          Length = 224

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L          +     +   +  +  G   L PK   + ++ + E   L+ ++  
Sbjct: 90  VTHALKSGALGYMLKEMDADEIVEAIKVVANGGSYLHPK---VTKNLVAEFKRLSEHENK 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++G+++  I   L IS  TV N+++SI++K    
Sbjct: 147 GNFHQTEIRRPFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVN 206

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A++N 
Sbjct: 207 DRTQAVVTAIKNG 219


>gi|149186879|ref|ZP_01865189.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148829546|gb|EDL47987.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 226

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 6/154 (3%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA-RIRIGLMLLFPKGRIIL 155
               + +   +       T   +     G+ +     TF +  RI   ++       +I 
Sbjct: 73  STLRISEIAQQAKLSRAETDYIDRMKKMGITDGLIIPTFGMDLRIVKFVLGQVTDFSVIE 132

Query: 156 RDRLWEIGL---LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            D L+E      +A  + +     D    +   L  REVE L WI++GKT+ EIA ILG+
Sbjct: 133 NDNLFEFTATLQMAHRRLDELARQDEPIRRR--LPRREVEILHWIAKGKTNAEIAAILGV 190

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV  +IA + +K     R+       R  I+
Sbjct: 191 AAPTVATHIARMFQKLDVNDRAALAVKGFRYGII 224


>gi|73749035|ref|YP_308274.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|147669801|ref|YP_001214619.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|73660751|emb|CAI83358.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
 gi|146270749|gb|ABQ17741.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 225

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----- 184
            C      A   I  +    +G   + + L     LA      F+   +  GKD      
Sbjct: 103 ACLKKSSTAEELIETIRRANRGEYPINESLMGSPSLAKQVLAQFQDVSM-LGKDASSFVA 161

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + LT I+ G T+ +IA  L IS  T+ N++++I+RK     R+ A+  A+R  
Sbjct: 162 PLTNREKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKLNANDRAHAVVVAIRCG 221

Query: 245 IV 246
           ++
Sbjct: 222 LI 223


>gi|294054035|ref|YP_003547693.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613368|gb|ADE53523.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 208

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  ELT RE+E L  + EG+++ EIA ++ IS +TV  ++ +I  K     R+ A+ 
Sbjct: 139 ARKQQEELTPRELEVLQLLGEGQSNKEIADVMDISLSTVKIHVTNIRDKLGAADRTQAVV 198

Query: 239 YAVRNNIV 246
            A +  I+
Sbjct: 199 IAFKRGIL 206


>gi|115265509|dbj|BAF32771.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv.
           actinidiae]
 gi|330965240|gb|EGH65500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 254

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLA-AYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            R  L E GLLA A+Q   +  +D  +      +LT RE ECL+W +EG T+ EIA  L 
Sbjct: 158 ARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLN 217

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  T+  ++ S M+K   K R  A+  AV   ++
Sbjct: 218 RSVATITLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252


>gi|260362858|ref|ZP_05775727.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|260880146|ref|ZP_05892501.1| putative transcriptional regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|260895263|ref|ZP_05903759.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466]
 gi|308085787|gb|EFO35482.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466]
 gi|308092058|gb|EFO41753.1| putative transcriptional regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|308112231|gb|EFO49771.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030]
          Length = 214

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 42/79 (53%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y      +       + ELT RE++ L  + EG ++ EIA  L IS +T+ +++ +I
Sbjct: 135 LVNYYKGKESNNVSEPAIEVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNI 194

Query: 225 MRKTATKTRSGAIAYAVRN 243
            RK   K R+ A ++A RN
Sbjct: 195 FRKLEVKNRTQATSWAKRN 213


>gi|299536017|ref|ZP_07049336.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis
           ZC1]
 gi|298728622|gb|EFI69178.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis
           ZC1]
          Length = 224

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L          +     +   +  +  G   L PK   + ++ + E   L+ ++  
Sbjct: 90  VTHALKSGALGYMLKEMDADEIVEAIKVVANGGSYLHPK---VTKNLVAEFKRLSEHENK 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++G+++  I   L IS  TV N+++SI++K    
Sbjct: 147 GNFHQTEIRRPFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVN 206

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A++N 
Sbjct: 207 DRTQAVVTAIKNG 219


>gi|51893278|ref|YP_075969.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51856967|dbj|BAD41125.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 197

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 5/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  +   K      R   +     H     +            +  
Sbjct: 30  DVVIMDISLPDMSGIEATRLIKEAVPETR---VIGLTMHEEEPFVLEFLRAGADAYIVKR 86

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A   +G +    +G+ +L   +    ++  Y +   ++      +   LT RE E L 
Sbjct: 87  SAAADLVGAIRAVMEGQAVLDPAVTR-AVVEGYVSRPGRAVGQ-PEEPCPLTPREREILV 144

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+EG T+ EIA  L IS  TV  + ++++ K     R+  + YA+R  +V
Sbjct: 145 LIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIHDRTELVRYAIRQGLV 195


>gi|163848766|ref|YP_001636810.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526715|ref|YP_002571186.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163670055|gb|ABY36421.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450594|gb|ACM54860.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 218

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 68/191 (35%), Gaps = 17/191 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L R  L     +D ++           +   E  +    +   +++        
Sbjct: 38  GAEGVELARELLPDVVLMDLVMP---------GIDGVETTRRLKAVSPSSQVIVLTSFAD 88

Query: 117 PENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
            + + P        Y         +   +        ++  D       +AA     F +
Sbjct: 89  DDKVFPAIKAGAISYLLKDISPEDLAHAIRAACRGEAVLHPD-------VAAKLMQEFNT 141

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +     +LT RE++ L  +++G ++ EIA  L +S  TV  +I++I+ K     R+ 
Sbjct: 142 PRPNEAPVEQLTPREMDVLRLVAKGMSNKEIAETLIVSEKTVKTHISNILSKLHLADRTQ 201

Query: 236 AIAYAVRNNIV 246
              YA+R  +V
Sbjct: 202 VAIYALRKRLV 212


>gi|269965326|ref|ZP_06179446.1| putative transcriptional regulator, LuxR family [Vibrio
           alginolyticus 40B]
 gi|269829972|gb|EEZ84201.1| putative transcriptional regulator, LuxR family [Vibrio
           alginolyticus 40B]
          Length = 218

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 43/79 (54%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y      +  +    + ELT REV+ L  + EG ++ EIA  L IS +T+ +++ +I
Sbjct: 139 LVNYYRGREANNIIEPAIEVELTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNI 198

Query: 225 MRKTATKTRSGAIAYAVRN 243
            RK   K R+ A ++A RN
Sbjct: 199 FRKLEVKNRTQATSWAKRN 217


>gi|254228707|ref|ZP_04922130.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262396571|ref|YP_003288424.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
 gi|151938654|gb|EDN57489.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262340165|gb|ACY53959.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 43/79 (54%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y      +  +    + ELT RE++ L  + EG ++ EIA  L IS +T+ +++ +I
Sbjct: 131 LVNYYRGKEANSIIEPAIEVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNI 190

Query: 225 MRKTATKTRSGAIAYAVRN 243
            RK   K R+ A ++A RN
Sbjct: 191 FRKLEVKNRTQATSWARRN 209


>gi|156741340|ref|YP_001431469.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232668|gb|ABU57451.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 230

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 75/228 (32%), Gaps = 11/228 (4%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYAL--TEYVGASHFLLVRWDLFQEQKLDSIV 78
           +  S  P+   L+     L         +      E VG +       D      +D +V
Sbjct: 6   TAGSSSPSTRVLIVDDHELA-RAGLAAVLACEPGIEVVGEADNGAAALDFVARHPVD-LV 63

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             D    ++  +   E  +    L     +        P+ +            L     
Sbjct: 64  MMDLQMPVIDGI---EATRRIKALHPAIGIIMVTVQAKPDALMEALRAGVAGYLLKDASR 120

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R  IG +    +G   L   L    L     A+   + D    +   LT RE + L  + 
Sbjct: 121 REIIGAVRQVLRGEAFLNPDLVLQTL--RRLAHATPTDDATPIEP--LTPREQQVLRLLM 176

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKT+ EIA  L IS  TV  ++  I+ K     R+ A   A+   +V
Sbjct: 177 QGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGLV 224


>gi|306823235|ref|ZP_07456611.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801640|ref|ZP_07695761.1| response regulator receiver domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553867|gb|EFM41778.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221772|gb|EFO78063.1| response regulator receiver domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 248

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +R+ E GL       
Sbjct: 107 VMAAINAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLT 166

Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  S D    +         ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 167 IPTSADTAPSRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248


>gi|325066389|ref|ZP_08125062.1| two component LuxR family transcriptional regulator [Actinomyces
           oris K20]
          Length = 234

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSY 176
            +      ++   SL   + +   G ++L P    I+ D  RLW  G     ++    ++
Sbjct: 101 GVRGFVAKEDGASSLAGAIHQAVAGNLVLSPTSSAIISDQARLWASGSSRPSESIPVPTH 160

Query: 177 DVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        L+ RE E LT + + KT+ +IA  L +S  TV  ++++I+ K   + 
Sbjct: 161 AQQPPSPLPHGVTLSEREREVLTLVVDAKTNKQIATRLRVSEATVKTHVSAIIAKLGVQD 220

Query: 233 RSGAIAYAVRNNIV 246
           R GA  YA+++N+V
Sbjct: 221 RVGAAVYALQHNLV 234


>gi|126650153|ref|ZP_01722386.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593325|gb|EAZ87287.1| two-component response regulator [Bacillus sp. B14905]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 10/164 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIR 141
            D V  +    +     +   P      V   L ++   PA       Y   T +  +I 
Sbjct: 53  MDNVMPIMTGAEATAEILAAWPEAKIMMVTSFLDDDKVYPALEAGAVSYILKTSNAKQIA 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++  +      + +     M    +        LT RE+E L  +++GK
Sbjct: 113 EAIRKTMGGETVLEPE------VTSKMMHRMRHGNNTPL--YDHLTDREMEVLLLMAQGK 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + EIA  L I+  TV  ++++I+ K   + R+ A+ YA +N +
Sbjct: 165 ANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 208


>gi|172040517|ref|YP_001800231.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171851821|emb|CAQ04797.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 234

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 13/156 (8%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                     +   P  L    + T  + +   +     Y       +++  G+      
Sbjct: 91  GARATQAICAIPDGPQVLVVTNYSTDQDVVGAVSAGAVGYLLKDAPPSKVLDGIRRAARG 150

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++  + + ++         M    +        LT RE+E L  + EGK++ +IA  L
Sbjct: 151 ESVMAPEIMGKL------MGQMTNPTEA-------LTPRELEVLALVGEGKSNRDIARHL 197

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  TV ++++ + RK     R+ A+A A +  I+
Sbjct: 198 VLTEATVKSHLSHVFRKLGANNRTSAVAVARQRGII 233


>gi|282861875|ref|ZP_06270938.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562900|gb|EFB68439.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 214

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP----VFHTLPENITPPAGMDNRYCS-- 132
            S  P  ++  + +   D     L+R  EL  P    +  +  E  T    +    C   
Sbjct: 48  ESLRPDVVLMDIKMPGTDG-IEALRRLRELDNPAKVLIVTSFTEQRTVVPALRAGACGYV 106

Query: 133 -LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               D   +   +  +     ++  +      LLA       +      G+   LT RE 
Sbjct: 107 YKDVDPDALAGAIRSVHAGHVLLQPE--VAGALLAQ------EDAGGGTGRGSTLTERER 158

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 159 EVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211


>gi|239978741|ref|ZP_04701265.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291450632|ref|ZP_06590022.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353581|gb|EFE80483.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 222

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 16/170 (9%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLT 134
            P  ++  + +   D     L+R  EL  P        F      +         Y    
Sbjct: 59  QPDVVLMDVKMPGMDG-VEALRRLRELANPARVLVVTSFTEQRTVVPALRAGAGGYVYKD 117

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D   +   +  +     ++  +      LL+  +    +      G+   LT RE E L
Sbjct: 118 VDPEALARAIRSVHAGHVLLQPE--VAGALLSQDEHGQGQ------GRGGSLTEREREVL 169

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 170 GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 219


>gi|22536505|ref|NP_687356.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|76788056|ref|YP_329044.1| LuxR family transcriptional regulator [Streptococcus agalactiae
           A909]
 gi|76797803|ref|ZP_00780068.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21]
 gi|77405005|ref|ZP_00782106.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77410572|ref|ZP_00786932.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|22533337|gb|AAM99228.1|AE014206_8 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|76563113|gb|ABA45697.1| DNA-binding response regulator, LuxR family [Streptococcus
           agalactiae A909]
 gi|76586817|gb|EAO63310.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21]
 gi|77163287|gb|EAO74238.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77176444|gb|EAO79212.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 213

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E D     L      P      +   L      P        Y   T  
Sbjct: 50  PDVVVMDLVMPEMDGVEATLALLKDWPEAAILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +  +    + I  +                K++D        LT RE + L  
Sbjct: 110 AAEILNAIRKVSRGEQAIENE-----------VDKKIKAHDKCPALHEGLTARERDILNL 158

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 159 LAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLV 208


>gi|270341116|emb|CAQ15948.2| vR protein [Pseudomonas fuscovaginae]
          Length = 239

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 23/236 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    ++      +W   +      +G S  L       + Q   + + S++P D  R  
Sbjct: 5   DECVELLSAIDARTWFESLVFSARKLGYSKVLYALKPNKEAQNNAAEIMSNFPDDWRRRY 64

Query: 91  ALSE--------KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIR 141
                          + + L  P E          E           +  +L     + +
Sbjct: 65  DNENYSIIDPTVFHSFSSSLPIPWEDKLYKTQKEKEFAEEARWAGLSHGMTLPIHGPQGQ 124

Query: 142 IGLMLLF------PKGRIILRDRLWEIGLLAAYQA----NMFKSYDVHWGKDFELTGREV 191
           +G++ L       P+ +  L++ L    LL  Y      N F+    +      LT RE+
Sbjct: 125 VGMLSLSCDPMSEPEYQKTLKNSLGAATLLRDYAVTSSFNHFQQGSGYTAP--HLTPREL 182

Query: 192 ECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W  +E KT+ EI  IL +S  TV  +  +I RK    +R  A+A A++ +++
Sbjct: 183 EILHWAWAE-KTTWEIGKILSLSEPTVEFHFKNIRRKLKVTSRRLAVARAIQLDLI 237


>gi|147677779|ref|YP_001211994.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146273876|dbj|BAF59625.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 217

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +    +     LT REV+ L  +++G ++  IA  L IS  TV N++ SI +K    
Sbjct: 141 RLSTISSRYSHPLGLTRREVDVLRLVAQGDSNRSIAQKLFISEKTVKNHLTSIFQKLGVD 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +AV+N I+
Sbjct: 201 DRTQAALHAVKNKII 215


>gi|229012624|ref|ZP_04169797.1| Response regulator receiver [Bacillus mycoides DSM 2048]
 gi|228748647|gb|EEL98499.1| Response regulator receiver [Bacillus mycoides DSM 2048]
          Length = 215

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++ GK + EIA IL +S  TV  +I +I++K     R+ A   A+R  I
Sbjct: 154 LTKREIDVLQLLAYGKQNHEIAKILYVSEGTVKTHIHNILQKLDVTDRTQAAVMAIRKKI 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|229181658|ref|ZP_04308983.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           172560W]
 gi|228601854|gb|EEK59350.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           172560W]
          Length = 215

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ E+A +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|313636331|gb|EFS02121.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL
           S4-171]
          Length = 228

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 50/133 (37%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          +     L   V  +  G   + P+  I L      +      Q  
Sbjct: 91  VTEALRAGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGV 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++GK++  I   L IS  TV N+++SI++K    
Sbjct: 151 YGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVN 210

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A+++ 
Sbjct: 211 DRTQAVVTAIKHG 223


>gi|294498204|ref|YP_003561904.1| two-component response regulator LiaR [Bacillus megaterium QM
           B1551]
 gi|294348141|gb|ADE68470.1| two-component response regulator LiaR [Bacillus megaterium QM
           B1551]
          Length = 208

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 16/170 (9%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136
           P  ++  + + E D        + Q P      V   L +    PA       Y   T  
Sbjct: 48  PDIILMDLVMEEMDGIEATKQLIKQWPEAKVIIVTSFLDDEKVYPALEAGATSYLLKTSK 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   +   +    ++  +      +     + M K    H     ELT RE+E L  
Sbjct: 108 AGEIAAAIRRTYEGQSVLEPE------VTGKMMSKMRKPSLPHE----ELTAREMEILLL 157

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++GKT+ EIA  L I+  TV  ++++++ K   + R+ A+ YA ++ +V
Sbjct: 158 MTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHKLV 207


>gi|163847477|ref|YP_001635521.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222525329|ref|YP_002569800.1| LuxR family transcriptional regulator [Chloroflexus sp. Y-400-fl]
 gi|163668766|gb|ABY35132.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449208|gb|ACM53474.1| transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl]
          Length = 487

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + +++ RE E L  ++ G T+ +IA+ L IS NTV  ++ +I  K   ++R+ A  YA+
Sbjct: 3   NESQISEREREILRLVATGATNQQIAIALNISVNTVKVHLRNIFAKIGVESRTEATVYAI 62

Query: 242 RNNIV 246
           RN IV
Sbjct: 63  RNGIV 67


>gi|290961496|ref|YP_003492678.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260651022|emb|CBG74140.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 213

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 16/169 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D     L+R  EL  P        F      +         Y     
Sbjct: 51  PDVVLMDVKMPGMDG-VAALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++  +      LL+  +AN  +      G+   LT RE E L 
Sbjct: 110 DPDALAGAIRSVHAGHILLQPE--VADALLSQEEANSGQ------GRGGSLTEREKEVLG 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 162 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210


>gi|186680836|ref|YP_001864032.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463288|gb|ACC79089.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 224

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 50/125 (40%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
             A     YC        + + +  +        +    EI       + +         
Sbjct: 93  LIAAGAQGYCLKGIPAESLILAVRSVAGGASWWDQTATTEIRAAFEGNSTVVLPAKTEGT 152

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  LT RE E L  ++ GK++ EIA IL I+  TV  ++ +I++K   + R+ A   A+
Sbjct: 153 LENPLTKREQEILALVAAGKSNQEIAEILYIAPGTVRVHVHAILQKLEVRDRTQAAVLAI 212

Query: 242 RNNIV 246
           +  +V
Sbjct: 213 QKGLV 217


>gi|319794223|ref|YP_004155863.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315596686|gb|ADU37752.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 303

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 55/132 (41%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +   +       H L + ++P     +   +L    A +      +    R +    L E
Sbjct: 160 IAWRSPQAALWLHALEDPVSPGLLPQSLEAALMAGAAIVIGTATGMRLSVRNLGAAALGE 219

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             LL A Q +           +  LT RE E L+W+++GKT+ +I  ILG S  TVN ++
Sbjct: 220 TMLLFAMQRDGTAGASSARLAEAALTPRETEVLSWLAKGKTNRDIGEILGTSPRTVNKHL 279

Query: 222 ASIMRKTATKTR 233
             I  K   +TR
Sbjct: 280 EHIFEKLGVETR 291


>gi|222151857|ref|YP_002561017.1| two-component response regulator VraR [Macrococcus caseolyticus
           JCSC5402]
 gi|222120986|dbj|BAH18321.1| two-component response regulator VraR [Macrococcus caseolyticus
           JCSC5402]
          Length = 207

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 77/170 (45%), Gaps = 16/170 (9%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFD 136
           P  ++  M ++E D       +  +  ++   +  +  E+      +D   + Y   T  
Sbjct: 47  PDIVLMDMVMNEMDGIEATAQIKSQMPKVKVVMLTSFIEDKEVYRALDAGVDSYILKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              IR  ++  +    +  ++ + ++      +A M +  ++H      LT RE E L  
Sbjct: 107 AEEIRDAIIKTYQGESVFEKEVMMKM------RARMNQKAELH----DMLTEREKEILLL 156

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA +++++
Sbjct: 157 IAKGYSNQEIADASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLI 206


>gi|325277459|ref|ZP_08143066.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097402|gb|EGB95641.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 82

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N   S          LT RE + L W + GK+S EI  IL    +TVN ++++I+RK   
Sbjct: 4   NARHSQHPLADAPVRLTPREQQVLLWCAYGKSSWEIGQILACKESTVNFHVSNILRKFDV 63

Query: 231 KTRSGAIAYAVRNNIV 246
            TR  A+  A+R  ++
Sbjct: 64  PTRVAAVIKAIRYGML 79


>gi|320011731|gb|ADW06581.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 223

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPGRDGPAKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPAVELVQAIRVVAAGEAMLAPSITRR-LLDKYADHLPSGEEPVPDALHTLTE 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K + + R  A  YA  + +V
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLSLRDRVQAAVYAYESGLV 218


>gi|152967753|ref|YP_001363537.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151362270|gb|ABS05273.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 236

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 8/179 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+ L  +V  D        +    + K      R   L         +         N Y
Sbjct: 60  EELLPDVVLMDVWMPRRSGIDACAEIKAAAPSTRIIMLTSS--EEEEDLFGAVRAGANGY 117

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH---WGKDFELT 187
                    +   +  +     +I        GLL      M +  +           L+
Sbjct: 118 LLKDVPAEEVADAIRAVVTGQSLITPKM---AGLLLGEFNAMRRRDEERNLGLPGAPRLS 174

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  ++ G  + EIA  LGIS NTV N++ +I+ K    +R  A+ YAVR  IV
Sbjct: 175 PRELDVLRLLARGMANREIAGSLGISENTVKNHVRNILEKLQLHSRMEAVVYAVREKIV 233


>gi|34497990|ref|NP_902205.1| nitrate/nitrite response regulator protein narL [Chromobacterium
           violaceum ATCC 12472]
 gi|34103845|gb|AAQ60206.1| nitrate/nitrite response regulator protein narL [Chromobacterium
           violaceum ATCC 12472]
          Length = 215

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 80/218 (36%), Gaps = 14/218 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLV--RWDLFQEQKLDSIVSSDWPFDLVRCM 90
             R++ +D    +   + AL +      FL+V    D     K   ++  D     +   
Sbjct: 4   AIRILLIDDHTLFRSGLKALLQR--QDDFLVVGEAADGLDGVKQAELLKPDVVLLDLDMP 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIGLMLL 147
            ++ ++    +L         +     +         G    Y     +   +   +   
Sbjct: 62  VMNGREALAQILSGCPNAAVLMLTVSEDGDDLAECMRGGARGYLLKNINADFLLDSIRRA 121

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++  +      LLA  +    K+ +        LT RE E L W++ G ++ EIA
Sbjct: 122 VDGDSVLSPE--MTAKLLARLRQPAAKASEADA-----LTPRERETLGWLARGASNKEIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L ++ +TV  ++ +I+RK +  +R  A  YAV + +
Sbjct: 175 RALDLAESTVKVHVQNILRKLSLSSRVQAAVYAVEHGL 212


>gi|70726115|ref|YP_253029.1| hypothetical protein SH1114 [Staphylococcus haemolyticus JCSC1435]
 gi|68446839|dbj|BAE04423.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 207

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 75/182 (41%), Gaps = 17/182 (9%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +  ++ +  +D P  ++  + + E +       V     ++   V  +  ++    + ++
Sbjct: 37  QSLINYLNENDIPDIILLDLVMPEMNGIEVTEYVKSHFPDIKVLVLTSYVDDEHVISAIN 96

Query: 128 ---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +  ++   +  +    RII  +             ++ ++         
Sbjct: 97  KGADGYEMKDVEPQKLIQTIHDVLNNKRIIHPEA-----------QSVIETVSSKPHNTN 145

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +GKT+ EIA  L +S  T+  +++ I  K +   R+ A  YA+ N 
Sbjct: 146 KLSKREIEVLAEMVKGKTNKEIANTLFVSEKTIKTHVSHIFNKLSVTDRTQAAIYAIENK 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|83859373|ref|ZP_00952894.1| Transcriptional regulatory protein, LuxR family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83852820|gb|EAP90673.1| Transcriptional regulatory protein, LuxR family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 241

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           ++ R+ ++G      +      D        L+ REVE L W++ GK++  IA ILG+S 
Sbjct: 149 IQLRMLQLG-CQELYSRTIMLRDYDAPAPPHLSEREVEILQWLARGKSNAVIAAILGVSP 207

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV+  +     K     R  A+  A+R  ++
Sbjct: 208 HTVDTIMRRAFVKLNASNRIAAVLKALRVGLI 239


>gi|90739296|gb|ABD97851.1| AvsR [Agrobacterium vitis]
          Length = 246

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 19/177 (10%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPV-----FHTLPENITPPAGMDN--------RYCSLT 134
             + + +    +NVL + +    PV      H   E +   + + +         Y  L+
Sbjct: 65  EPILMLDAPVLHNVLSQLSRAMEPVDMHDLAHVSEEGLLLRSKLRDLPLPRQAVSYPLLS 124

Query: 135 FDVARIRIGLMLLFPKGRIILRDRL---WEIGLLAA-YQANMFKSYD-VHWGKDFELTGR 189
            D  R  I  +      +   R R     +I LLA  + A + K  D         LT R
Sbjct: 125 ID-GRGAILAIASNACEQEWRRFRRCHDRDIHLLAGKFHAGLVKRCDGADIAGTPPLTRR 183

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W + GK+  E AVILGIS  TV  ++A+   K    + + A+  A++  ++
Sbjct: 184 EQETLRWTAAGKSYWETAVILGISERTVRYFMANARIKLDAVSNTQAVVKALQRGLI 240


>gi|92109564|ref|YP_571851.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91802646|gb|ABE65019.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 231

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 2/133 (1%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-ANMF 173
            L +      G+ + Y  +        I  +     G +     L  +   A+Y      
Sbjct: 99  RLIQGEAAEFGLRDGY-VVPISTIDGEIVSLSFGGPGTLPASADLSVLNFAASYALGRHL 157

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                    +  LT RE +CL W  EGKT+ EI+ ILGIS++TV  +I +   K    ++
Sbjct: 158 HRIATWRRVNSNLTAREWDCLLWAGEGKTNWEISAILGISKSTVTKHIMAARAKLGAVSK 217

Query: 234 SGAIAYAVRNNIV 246
           + AIA A+R  ++
Sbjct: 218 AHAIAMAIRTKLL 230


>gi|325294100|ref|YP_004279964.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325061953|gb|ADY65644.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 258

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 84/242 (34%), Gaps = 31/242 (12%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            ++                 L    G  +FL+ R    +      I++   P   +    
Sbjct: 20  FISACYQAGNADRVRSEFVTLIREYGFEYFLVSRRMTGELASTGQILAQHLPEGWIEVYR 79

Query: 92  LSEKDKYYNVLQRPTELFCPV-----FHTLPENITPPA-----------GMDNRYCSLTF 135
             + +    V +    +  P         LP  +               G+   Y +   
Sbjct: 80  AKKYNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRANVFFHDAGRYGLQGGY-AFPV 138

Query: 136 DVARIRIGLMLLFPKGRIIL-----------RDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                 IG + L  + R +            R   W +  L+    N+  + +V      
Sbjct: 139 HGRAGFIGAVFLGGEDRQLPSLHVELLDAATRAVFWRLLDLSGQVHNLNNAPNVSA---L 195

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E LT +++G TS EI   L IS +TV+ YI  I R+ + K R   +A A RN 
Sbjct: 196 ELTRREMEVLTLMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRNG 255

Query: 245 IV 246
           ++
Sbjct: 256 LL 257


>gi|310659232|ref|YP_003936953.1| degu [Clostridium sticklandii DSM 519]
 gi|308826010|emb|CBH22048.1| DegU [Clostridium sticklandii]
          Length = 211

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 16/203 (7%)

Query: 52  LTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTEL- 108
           LT+ +    +F +V       + LD I     P D+V   + +   +     L++  +L 
Sbjct: 13  LTKILEMEDNFEVVFKAADGYEALDYI--EQNPVDIVLLDINMPNMNG-IETLKKMKQLD 69

Query: 109 ------FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                    V+ T    I       N Y     +   +   +  ++  G  I  +     
Sbjct: 70  FETKIIMLTVYDTREYLIETLNLGANGYMLKDAETDSLVKAIEAVYNGGSYIHPN---LA 126

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G L         S ++  G D  LT RE E L  I+EG ++ +I+  L IS  TV N+++
Sbjct: 127 GELFKEINRQRVSRNIKSGVD-SLTRREYEVLLLIAEGMSNKDISDHLVISEKTVKNHVS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           SI+RK   + R+ A  +A++  +
Sbjct: 186 SILRKLDLQDRTQAAIFAIKQKL 208


>gi|289435776|ref|YP_003465648.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172020|emb|CBH28566.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313631967|gb|EFR99092.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL
           N1-067]
          Length = 228

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 50/133 (37%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          +     L   V  +  G   + P+  I L      +      Q  
Sbjct: 91  VTEALRAGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGV 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++GK++  I   L IS  TV N+++SI++K    
Sbjct: 151 YGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVN 210

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A+++ 
Sbjct: 211 DRTQAVVTAIKHG 223


>gi|297618086|ref|YP_003703245.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145923|gb|ADI02680.1| two component transcriptional regulator, LuxR family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 213

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               + +LT RE + L  + +G ++ E+A  L IS  TV N++ SI RK   K R+ A+ 
Sbjct: 143 RRRDEMKLTKRERDVLELLVKGYSNKEVAAALFISEKTVKNHLTSIFRKLEVKDRTQAVI 202

Query: 239 YAVRNNIV 246
           YA++N +V
Sbjct: 203 YALKNKVV 210


>gi|271962958|ref|YP_003337154.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506133|gb|ACZ84411.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 234

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +    T     + +   +   V  +  G  L+ P    +    + E   ++  +A  
Sbjct: 106 FEAIKAGATGYLLKNVQLDEVPEAVRGVHEGQSLINP---AMAAKLITEFANMSRKEAER 162

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                V       LT RE+E L  +++G  + EIA  L IS NTV N++ +I+ K    +
Sbjct: 163 PPQLPVPR-----LTDREMEVLRLVAKGMNNREIAKQLFISENTVKNHVRNILDKLQLHS 217

Query: 233 RSGAIAYAVRNNIV 246
           R  A+ YAVR  ++
Sbjct: 218 RMEAVVYAVRERML 231


>gi|228955660|ref|ZP_04117658.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229072878|ref|ZP_04206076.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           F65185]
 gi|229082623|ref|ZP_04215086.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock4-2]
 gi|229153573|ref|ZP_04281751.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1550]
 gi|228630177|gb|EEK86828.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1550]
 gi|228701055|gb|EEL53578.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock4-2]
 gi|228710221|gb|EEL62197.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           F65185]
 gi|228804029|gb|EEM50650.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 215

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   +     G + L P               L +    
Sbjct: 91  VLPALRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDI----------ANALLSQTLP 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +  +    +   LT RE E L  +++G ++ E+A +L I+  TV  +++SI+ K    
Sbjct: 141 VEEKEEEPSIQVDVLTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLS 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YAV+N IV
Sbjct: 201 DRTQAALYAVKNGIV 215


>gi|28901301|ref|NP_800956.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835889|ref|ZP_01988556.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|260900615|ref|ZP_05909010.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|28809814|dbj|BAC62789.1| putative transcriptional regulator, LuxR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149750643|gb|EDM61388.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|308106917|gb|EFO44457.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|328469239|gb|EGF40185.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 218

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 42/79 (53%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y      +       + ELT RE++ L  + EG ++ EIA  L IS +T+ +++ +I
Sbjct: 139 LVNYYKGKESNNVSEPAIEVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNI 198

Query: 225 MRKTATKTRSGAIAYAVRN 243
            RK   K R+ A ++A RN
Sbjct: 199 FRKLEVKNRTQATSWAKRN 217


>gi|256788589|ref|ZP_05527020.1| two component response regulator [Streptomyces lividans TK24]
 gi|289772481|ref|ZP_06531859.1| two component response regulator [Streptomyces lividans TK24]
 gi|289702680|gb|EFD70109.1| two component response regulator [Streptomyces lividans TK24]
          Length = 213

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 16/161 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +   +      V+   TE    V   L          D    +L   +  +  G 
Sbjct: 67  DALRRLRELDNHARVLVVTSFTEQRT-VVPALRAGAAGYVYKDVDPDALAGAIRSVHAGH 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +LL P+             LL+  +++         G+   LT RE E L  I++G+++ 
Sbjct: 126 ILLQPE---------VAGALLSQEESSSGP------GRAGSLTEREREVLGLIADGRSNR 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 171 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGV 211


>gi|219849240|ref|YP_002463673.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543499|gb|ACL25237.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 247

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 16/142 (11%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F+ L          D +  +L   + R+  G          ++ D L E   +A    + 
Sbjct: 101 FNALRAGAAAYRSKDIKPAALADIIRRVARG--------EYVINDVLMEEPRIAGRILSQ 152

Query: 173 FK--------SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           F+        + D+       L+ RE+E L  I+ G ++ EIA  LGIS  TV N+I+SI
Sbjct: 153 FRNLPEVQTLADDLGIQIFTPLSEREIEVLERIAAGSSNKEIADALGISTQTVKNHISSI 212

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           +RK +   R+ A+ +A+R   +
Sbjct: 213 LRKLSLNDRTQAVIFALRRGWI 234


>gi|187930859|ref|YP_001901345.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|241664112|ref|YP_002982472.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|187728903|gb|ACD30066.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|240866139|gb|ACS63800.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 201

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           L++  Q  + +    H      +L+ RE E L W + GKTS EIA ILG+S+ TV+ ++ 
Sbjct: 116 LISIVQTRLARRPRTHAAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMD 175

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +   K    TR  A+  A    I+
Sbjct: 176 NAREKLGVATRIEAVVRASSAGII 199


>gi|21220292|ref|NP_626071.1| two component response regulator [Streptomyces coelicolor A3(2)]
 gi|5123537|emb|CAB45293.1| putative two component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 210

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 16/161 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +   +      V+   TE    V   L          D    +L   +  +  G 
Sbjct: 64  DALRRLRELDNHARVLVVTSFTEQRT-VVPALRAGAAGYVYKDVDPDALAGAIRSVHAGH 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +LL P+             LL+  +++         G+   LT RE E L  I++G+++ 
Sbjct: 123 ILLQPE---------VAGALLSQEESSSGP------GRAGSLTEREREVLGLIADGRSNR 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 168 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGV 208


>gi|301059676|ref|ZP_07200584.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
 gi|300446242|gb|EFK10099.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
          Length = 219

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 81/214 (37%), Gaps = 13/214 (6%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           ++        + +L E   A+  + V  +    Q     +    P  ++  + + + D +
Sbjct: 11  VEDHTILRHGLRSLLE---AAGHVQVVGEAGDGQSAIRCILDTAPDLVLLDLNMPKMDGF 67

Query: 99  YNVLQ-RPTE----LFCPVFHTLPENITPPAGMD-NRYCSLTFDVARIRIGLMLLFPKGR 152
             VL+ R  +    +     H     I        + YC  +     +   +  +    R
Sbjct: 68  SVVLEIRKRQPETKILALTMHDDDAYILKAFKAGVDGYCLKSSGQDELMSAVNAVLSGKR 127

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            I  + + +  L    +AN        W     LT RE E L  ++EG  + EIA  L I
Sbjct: 128 FISPE-ISDKVLEGYLEANRTLKEQSDWD---SLTQREREVLKLVAEGYQNKEIAEYLFI 183

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  + A+IMRKT   + S   AYA+   ++
Sbjct: 184 SPKTVEKHRANIMRKTDLHSASSLTAYAIEKGLL 217


>gi|297489|emb|CAA68561.1| luxR [Aliivibrio fischeri]
          Length = 250

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DF 184
            S     A    G++      +    D L       I L+     + ++  ++   K + 
Sbjct: 122 FSFPIHTANNGFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNN 181

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL W  EGK+S +I+ ILG S  TV  ++ +   K  T  R  +I+ A+   
Sbjct: 182 DLTKREKECLAWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTG 241

Query: 245 IV 246
            +
Sbjct: 242 AI 243


>gi|254788088|ref|YP_003075517.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237687530|gb|ACR14794.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 303

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE E L W++ GKT+ EI  ILG S  T+N ++  I +K   + R+ A 
Sbjct: 236 SRLREHLPLTTRESEVLLWLARGKTNREIGQILGTSPRTINKHLEQIYKKLEVENRTTAA 295

Query: 238 AYAVR 242
           A A++
Sbjct: 296 AKALQ 300


>gi|256376928|ref|YP_003100588.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921231|gb|ACU36742.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 2/123 (1%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +       AR+  G+  +     ++      E  L+  Y   +    +   G  
Sbjct: 94  RAGASGFLLKDSPPARLLEGVRTVARGEALLDPSVTRE--LIGRYATRVRPREEPVHGAL 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L  +++G+++ EIAV L +S  TV  Y++ ++ K   + R  A+  A R 
Sbjct: 152 AGLSPRELEVLRLVADGRSNSEIAVELVLSPETVKTYVSRLLAKLDLRDRVQAVVPAHRT 211

Query: 244 NIV 246
            +V
Sbjct: 212 GLV 214


>gi|269125776|ref|YP_003299146.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310734|gb|ACY97108.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 220

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 5/152 (3%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  +          +         +++        R   L    A      +     G  
Sbjct: 71  EATRTITRTSPRIGVLVLTMFRDDDSVFAAMRAGARGYLLKESGAEEIARAVRAVAAGEA 130

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           I    +    L   Y A+M    D       ELT RE E L  I++G+++ EIA  L +S
Sbjct: 131 IYGPEIARRVL--TYFADM---PDPKQTAFPELTEREREVLQLIAQGRSNGEIAQTLFLS 185

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             TV N++++I  K     R+ AI  A    +
Sbjct: 186 PKTVRNHVSNIFMKLHVADRAQAIVLAREAGL 217


>gi|16330984|ref|NP_441712.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1653479|dbj|BAA18392.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 222

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 14/184 (7%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITP 122
            +Q    +V  D     +  + ++++ K   +  +   +          V          
Sbjct: 45  MQQTRPDVVIIDIGLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADA 104

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
               D+R   L   +     G   + P    I       +   A        S       
Sbjct: 105 YCMKDSRTELLIEAIQATHGGFAWIDPAIARI-------VLAHAPGAEPSEPSSPSRTSL 157

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + LT RE+E L  I +G ++ +IA  L I+  TV  ++ +I+ K     R+ A   A+R
Sbjct: 158 SYGLTERELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIR 217

Query: 243 NNIV 246
           + +V
Sbjct: 218 SGLV 221


>gi|299538340|ref|ZP_07051623.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298725927|gb|EFI66519.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 210

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 10/147 (6%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           +   P      V   L ++   PA       Y   T +  +I   +        ++  + 
Sbjct: 70  LAAWPEAKIMMVTSFLDDDKVYPALEAGAVSYILKTSNAKQIAEAIRKTMGGETVLEPE- 128

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                + +     M         +  +LT RE+E L  +++GK + EIA  L I+  TV 
Sbjct: 129 -----VTSKMMHRMRHGNSTPLYE--QLTEREMEVLLLMAQGKANQEIADELYIALKTVK 181

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++++I+ K   + R+ A+ YA +N +
Sbjct: 182 THVSNILAKLEVQDRTQAVVYAFQNGL 208


>gi|158340472|ref|YP_001521466.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158310713|gb|ABW32327.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  +++G T+ EIA    +S  TV N++++I+ +   + R+ A  YAV 
Sbjct: 152 DTPLTTRELEVLKLLAKGNTNKEIAKAFNLSEGTVKNHVSNILMRLGLRDRTQAAVYAVE 211

Query: 243 NNI 245
           + +
Sbjct: 212 HGL 214


>gi|51891630|ref|YP_074321.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855319|dbj|BAD39477.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 198

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 12/168 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           P  ++  + +   D    + +        +    F  L + +         + +   + A
Sbjct: 37  PDVVLMDLMMPGLDGLSALRELKGTGAKVIMLTSFLDLEKAMACIEEGALGFLTKDIEPA 96

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +      +  + +  + +          +      K   LT RE++ L  ++
Sbjct: 97  DLVDAIRAVHRGEPRLHPEVMKRLMV--------RTAQPHQPSKRDLLTPRELDVLRALA 148

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G T+ EIA  L IS  TV  +I+SI+ K     R+ A  +AVR  +V
Sbjct: 149 HGLTNREIAERLVISETTVKTHISSILSKLQLTDRTQAALWAVREGLV 196


>gi|16801720|ref|NP_471988.1| hypothetical protein lin2659 [Listeria innocua Clip11262]
 gi|16804553|ref|NP_466038.1| hypothetical protein lmo2515 [Listeria monocytogenes EGD-e]
 gi|46908687|ref|YP_015076.1| DNA-binding response regulator DegU [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093717|ref|ZP_00231469.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b
           H7858]
 gi|47096108|ref|ZP_00233709.1| DNA-binding response regulator DegU [Listeria monocytogenes str.
           1/2a F6854]
 gi|217963383|ref|YP_002349061.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|224499869|ref|ZP_03668218.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes Finland 1988]
 gi|224503244|ref|ZP_03671551.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes FSL R2-561]
 gi|226225063|ref|YP_002759170.1| two-component response regulator DegU [Listeria monocytogenes
           Clip81459]
 gi|254825362|ref|ZP_05230363.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J1-194]
 gi|254828090|ref|ZP_05232777.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N3-165]
 gi|254831062|ref|ZP_05235717.1| two-component response regulator DegU [Listeria monocytogenes
           10403S]
 gi|254853956|ref|ZP_05243304.1| DegU [Listeria monocytogenes FSL R2-503]
 gi|254900347|ref|ZP_05260271.1| two-component response regulator DegU [Listeria monocytogenes
           J0161]
 gi|254913414|ref|ZP_05263426.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818]
 gi|254932243|ref|ZP_05265602.1| DNA-binding response regulator DegU [Listeria monocytogenes
           HPB2262]
 gi|254937795|ref|ZP_05269492.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900]
 gi|254993056|ref|ZP_05275246.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J2-064]
 gi|255030722|ref|ZP_05302673.1| two-component response regulator DegU [Listeria monocytogenes LO28]
 gi|255521855|ref|ZP_05389092.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J1-175]
 gi|284802953|ref|YP_003414818.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578]
 gi|284996094|ref|YP_003417862.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923]
 gi|290892678|ref|ZP_06555670.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J2-071]
 gi|300764985|ref|ZP_07074973.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N1-017]
 gi|16412003|emb|CAD00593.1| lmo2515 [Listeria monocytogenes EGD-e]
 gi|16415195|emb|CAC97885.1| lin2659 [Listeria innocua Clip11262]
 gi|46881959|gb|AAT05253.1| DNA-binding response regulator DegU [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47015569|gb|EAL06501.1| DNA-binding response regulator DegU [Listeria monocytogenes str.
           1/2a F6854]
 gi|47017911|gb|EAL08692.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b
           H7858]
 gi|50313181|gb|AAT74538.1| DegU [Listeria monocytogenes]
 gi|217332653|gb|ACK38447.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|225877525|emb|CAS06239.1| Putative two-component response regulator DegU [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258600475|gb|EEW13800.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N3-165]
 gi|258607345|gb|EEW19953.1| DegU [Listeria monocytogenes FSL R2-503]
 gi|258610399|gb|EEW23007.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900]
 gi|284058515|gb|ADB69456.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578]
 gi|284061561|gb|ADB72500.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923]
 gi|290557738|gb|EFD91260.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J2-071]
 gi|293583800|gb|EFF95832.1| DNA-binding response regulator DegU [Listeria monocytogenes
           HPB2262]
 gi|293591421|gb|EFF99755.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818]
 gi|293594605|gb|EFG02366.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J1-194]
 gi|300514285|gb|EFK41344.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N1-017]
 gi|307572042|emb|CAR85221.1| DNA-binding response regulator [Listeria monocytogenes L99]
 gi|313617172|gb|EFR89687.1| transcriptional regulatory protein DegU [Listeria innocua FSL
           S4-378]
 gi|313622371|gb|EFR92844.1| transcriptional regulatory protein DegU [Listeria innocua FSL
           J1-023]
 gi|328465121|gb|EGF36389.1| hypothetical protein LM1816_15707 [Listeria monocytogenes 1816]
 gi|328471125|gb|EGF42029.1| hypothetical protein LM220_09715 [Listeria monocytogenes 220]
 gi|332312945|gb|EGJ26040.1| Transcriptional regulatory protein degU [Listeria monocytogenes
           str. Scott A]
          Length = 228

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 50/133 (37%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          +     L   V  +  G   + P+  I L      +      Q  
Sbjct: 91  VTEALRAGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGV 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++GK++  I   L IS  TV N+++SI++K    
Sbjct: 151 YGYQQPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVN 210

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A+++ 
Sbjct: 211 DRTQAVVTAIKHG 223


>gi|218515979|ref|ZP_03512819.1| probable two-component response regulator protein [Rhizobium etli
           8C-3]
          Length = 209

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 137 VARIRIGLMLLFPKGRIILRDR-LWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192
           VA  R G++ +   G+  L+   L  IG    L    A   +S D    + F LT RE E
Sbjct: 95  VAAARDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEVLRQRFSLTQRESE 154

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 155 VLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 202


>gi|298247435|ref|ZP_06971240.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550094|gb|EFH83960.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 234

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 10/223 (4%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
              L R++ +D        +  + E +G    ++            S+V    P  ++  
Sbjct: 14  EQGLIRVVVVDDHQVVREGLRMMLEILGEGFVMVGE--AADGASALSVVKETQPDVVLMD 71

Query: 90  MALSEKDK----YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIG 143
           + +   D      +   + P  +   +  T  E+     G+    C   L    +     
Sbjct: 72  LRMPGMDGLEAITHLRGRWP-HIAIVILTTYNEDDLMLRGLRAGACGYLLKDTSSETMFQ 130

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            +    +G  +L+  +    LL+        S       + EL+ RE+E L  ++ G+ S
Sbjct: 131 AIRSAARGETLLQPGVV-ARLLSRASQERRPSLGTRSSGEGELSERELEVLRKVASGERS 189

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LGIS  TV  ++ SI  K    +R+ A+A A+   ++
Sbjct: 190 KEIAAQLGISLRTVGAHLTSIYTKLGVDSRTSAVAVALERGLL 232


>gi|25010384|ref|NP_734779.1| hypothetical protein gbs0310 [Streptococcus agalactiae NEM316]
 gi|77408096|ref|ZP_00784843.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77413304|ref|ZP_00789499.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|23094736|emb|CAD45955.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160618|gb|EAO71734.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77173280|gb|EAO76402.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 213

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E D     L      P      +   L      P        Y   T  
Sbjct: 50  PDVVVMDLVMPEMDGVEATLALLKDWPEAAILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +  +    + I  +                K++D        LT RE + L  
Sbjct: 110 AAEILNAIRKVARGEQAIENE-----------VDKKIKAHDKCPALHEGLTARERDILNL 158

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 159 LAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLV 208


>gi|291616969|ref|YP_003519711.1| SdiA [Pantoea ananatis LMG 20103]
 gi|291151999|gb|ADD76583.1| SdiA [Pantoea ananatis LMG 20103]
 gi|327393397|dbj|BAK10819.1| cell division activating regulatory protein SdiA [Pantoea ananatis
           AJ13355]
          Length = 240

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 141 RIGLMLLFPKGRIILRDRLWEI----GLLAAYQANMFKS--YDVHWGKDFELTGREVECL 194
            +G++ +  K   I   R  E+      LA    ++ +    +    +  + + RE+E L
Sbjct: 129 AVGILSIGSKRPFITGSRRVELEVKLHFLAEQSLSLLERLNDEALMVQGNDFSQRELEIL 188

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGKTS EI++IL IS +TVN Y  ++ ++     ++    YA    ++
Sbjct: 189 RWTAEGKTSQEISLILSISEHTVNFYQKNMKKRFNVSNKTQIACYAAAIGLI 240


>gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 246

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 18/188 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENIT-----PPAGMD 127
            ++  + P  ++  + + E D Y     + + P     PV     + +T           
Sbjct: 57  ELLQQNLPDLVITDIMMPEVDGYQFLKQMREDPLFKALPVVFLTAKGMTTDRIQGYQAGC 116

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---- 183
           + Y S  FD   + + +  L  +  +           +AA    + +  ++  GK     
Sbjct: 117 DAYLSKPFDPEELVVIVKNLLERRAVATASSSDGNPDIAALAGQIARIENMLKGKSGITP 176

Query: 184 ------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  +
Sbjct: 177 TPPPIKIDLTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELV 236

Query: 238 AYAVRNNI 245
            YA+ + +
Sbjct: 237 RYALEHGL 244


>gi|148239235|ref|YP_001224622.1| two component system response regulator [Synechococcus sp. WH 7803]
 gi|147847774|emb|CAK23325.1| Possible two component system response regulator [Synechococcus sp.
           WH 7803]
          Length = 227

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWI 197
           G+M +   G+ I  D +  +  +A       K      G +      EL+ RE+E L  +
Sbjct: 120 GVMFVSSLGKGIDGDFIRSLSAIAEGGNYYPKDVQTAAGYEDIEILPELSDREMEVLKVL 179

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S G T+ EIAV L +S  TV  +++SI+ K   K R+ A+  A++  I
Sbjct: 180 SCGMTNKEIAVTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAGI 227


>gi|328542321|ref|YP_004302430.1| N-acyl homoserine lactone transcriptional regulator, LuxR-like
           protein [polymorphum gilvum SL003B-26A1]
 gi|326412068|gb|ADZ69131.1| Putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like protein [Polymorphum gilvum SL003B-26A1]
          Length = 230

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 4/144 (2%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           QR        F        P  G        +        GL  L       +      +
Sbjct: 89  QRRLFAEATEFGLGEGVGIPIHGARGSLAMASMVSDHGARGLARLMSTVGKDVHL----M 144

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L     A    +          LT RE ECL WI+ GK++ EI+ ILGIS  TV  ++ 
Sbjct: 145 SLAFHNHARELLALGRSGRTTVSLTRRERECLLWIAAGKSAWEISRILGISARTVYFHLD 204

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++  K        A+  A+   ++
Sbjct: 205 NVRAKMGVTNVYHAVVKAIMEGMI 228


>gi|326330817|ref|ZP_08197118.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325951347|gb|EGD43386.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 209

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 19/186 (10%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-------LFCPVFHTLPENI 120
               ++  ++V +  P  LV  + +        V++R          L    F T  + +
Sbjct: 35  AGDGEEALALVETLHPDVLVLDLRMPGTSG-VEVIERLRAKESRTGVLVLTTFDTDTDVV 93

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   +        ++          +A   A+  +S     
Sbjct: 94  AAIEAGATGYLLKDAPTTDLVEAVRATAAGETVLSP-------AVATRLASRLRSP---- 142

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   +L+ RE E LT ++ G T+  IA  L +S  TV  ++  I  K     R+ A+A A
Sbjct: 143 GPSAQLSPREREVLTLVARGTTNRVIAAKLFVSEATVKTHLGHIFDKLGVTDRAAAVARA 202

Query: 241 VRNNIV 246
               I+
Sbjct: 203 YDRGIL 208


>gi|309792037|ref|ZP_07686513.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308225930|gb|EFO79682.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 234

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 8/179 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+    +V  D     +  + ++   K  +   R   +   V+    +           Y
Sbjct: 41  ERLSPDVVLVDINLPGLNGLEVARVIKRRDP--RIGIIVLSVYEDDDQLFQAIKVGAAAY 98

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----E 185
            S   +   +   +  +     +I    L +  + A    + F+       +        
Sbjct: 99  SSKDVNPEDLLYYIRTVATGRYLINDSVLAKPNV-ATRVLHQFRELAATEDEQTSVLFAP 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+ YA++  
Sbjct: 158 LTSREIEILDCIARGLSNKEIANELSISGQTVKNHITSILSKLQVNDRTMAVIYAIKRG 216


>gi|229017580|ref|ZP_04174475.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229023797|ref|ZP_04180282.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228737482|gb|EEL87992.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228743723|gb|EEL93828.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 211

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 78/213 (36%), Gaps = 10/213 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+     +   + + ++     E +G +          Q ++ D +V  D     +  + 
Sbjct: 7   LVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALTFVQTERPD-VVLMDLSMPKMDGIE 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +++ K Y+   +   L    F      +       + Y        ++   ++ ++   
Sbjct: 66  ATKRIKQYDETIKI--LMLSSFSEQDYVLPAIEAGADGYQLKEVQPDQLVASIVAVYQGN 123

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                       LL    A   K           LT RE E L  I++G+++ EIA  L 
Sbjct: 124 ANFHPK--VTPALLGRSAAKKKKENPFSM-----LTKREQEVLREIAKGRSNKEIAAELH 176

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|218674106|ref|ZP_03523775.1| two component transcriptional regulator, LuxR family protein
           [Rhizobium etli GR56]
          Length = 305

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 140 IRIGLMLLFPKGRIILRDR-LWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            R G++ +   G+  L+   L  IG    L    A   +S D    + F LT RE E L 
Sbjct: 194 ARDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAANRRSDDEALRQRFSLTQRESEVLL 253

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 254 WIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|289679671|ref|ZP_06500561.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
          Length = 160

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 63  LGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 119

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 120 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 159


>gi|83594724|ref|YP_428476.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577638|gb|ABC24189.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 260

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              L  +     +   T  +      +G  H  + +VR +    +     V  ++     
Sbjct: 10  GSFLEALNGTSDSADLTTLLTGTFARLGFPHSCYHVVRLEGAGARL--PYVLHNYKDSWS 67

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVF---HTLPENIT----------PPAGMDNRYCSLT 134
                    +   VL    +   P        PE+++            AG+ + Y S+ 
Sbjct: 68  EHYFREGFLEIDPVLATCPDRQLPFLWSEAIAPESLSHDQRRMFSDARDAGLHDGY-SVP 126

Query: 135 FDVARIRIGLMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSYDV-----HWGKDF 184
              +      + + P+      R ++ ++   + LLA Y     +S  +        +  
Sbjct: 127 IRGSHGEFATVTVIPEQGGDAARRLIGEQKHLVHLLALYFDRHARSTVINARLSSRRRKT 186

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L W + GKTS EIA I GIS  +V  ++ +  +K  T +++ A+  A+   
Sbjct: 187 VLSPREQEMLRWAALGKTSWEIAEIAGISTKSVEFHLDNAKKKLGTYSKTHAVVKALTLG 246

Query: 245 IV 246
           +V
Sbjct: 247 LV 248


>gi|85713529|ref|ZP_01044519.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
 gi|85699433|gb|EAQ37300.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
          Length = 191

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 11/187 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-------NITPP 123
           EQ++ ++V   WP                  +QR      P   +  E         T  
Sbjct: 4   EQQISNVVLHRWPKAWSERYFTQGYLFDDPTIQRVNTSTEPFLWSELEPSYRNTPAPTRV 63

Query: 124 AGMDNRY---CSLTFDVARI-RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
            G    +   C  T  +  +            R  +  ++     L A  A        +
Sbjct: 64  MGEAREFNLGCGFTVPMITLDGQAAGFSLASERADVPPKVRRQLQLIAMHAFARALAQKY 123

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE++ L W++EGK+  EI VIL +S + V+     +  K     R+   A 
Sbjct: 124 NPAPVNLTPREMDILQWMAEGKSDWEIGVILKVSEHFVDKIARQLRAKLNATNRTQTAAT 183

Query: 240 AVRNNIV 246
           A+R+N++
Sbjct: 184 ALRHNLI 190


>gi|307330717|ref|ZP_07609854.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883609|gb|EFN14658.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 214

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 10/158 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLL 147
            +   E  +    L  P  +      T    + P        Y     D   +   +  +
Sbjct: 64  GLDGIEALRTLRGLDNPARVLIVTSFTEKRTVVPALRAGAAGYVYKDVDPEALARAIRSV 123

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++  +    + LL+  +           G+   LT RE E L  I++G+++ EIA
Sbjct: 124 HSGHVLLQPE--VALALLSQDEG-------GGQGRGGSLTEREREVLALIADGRSNREIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L +S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 175 RALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 212


>gi|320011566|gb|ADW06416.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 214

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 16/169 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D     L+R  EL  P        F      +       + Y     
Sbjct: 52  PDVVLMDIKMPGTDG-IEALRRLRELENPARVLIVTSFTEQRTVVPALRAGASGYVYKDV 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++  +      LLA       +      G+   LT RE E L 
Sbjct: 111 DPDALAGAIRSVHAGHVLLQPE--VAGALLAQ------EDTGNGTGRGSTLTEREREVLG 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 163 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211


>gi|239932122|ref|ZP_04689075.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440492|ref|ZP_06579882.1| two component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291343387|gb|EFE70343.1| two component response regulator [Streptomyces ghanaensis ATCC
           14672]
          Length = 213

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 16/171 (9%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLT 134
            P  ++  + +   D   + L+R  EL  P        F      +         Y    
Sbjct: 50  QPDVILMDVKMPGMDG-VDALRRLRELDHPARVLVVTSFTEQRTVVPALRAGAAGYVYKD 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D   +   +  +     ++  +     G L + + +         G+   LT RE E L
Sbjct: 109 IDPDALAGAIRSVHAGHVLLQAEV---AGALLSQEESA-----PGQGRAGSLTEREREVL 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 161 GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 211


>gi|311896318|dbj|BAJ28726.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 241

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELT 187
            Y         +   +  +      I         LL  +++    +S D        LT
Sbjct: 122 GYLLKEISTDEVATAIRAVADGQSQISPS--MAAKLLTEFKSMIQRRSDDRELLPAPRLT 179

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G  + EIA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 180 DRELEVLKLVATGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 238


>gi|59940055|gb|AAX12566.1| LuxR-type transcriptional regulator [Aeromonas sp. 'CDC 2478-85']
          Length = 260

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 85/237 (35%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++      L   Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELISRFTLGMGYDYYRFAVIILMSMQRRKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRY-----CSLTFDV 137
             +       ++Q   +   P++          L E      G+   +      S     
Sbjct: 68  TANHMLACDPIIQLARKQTLPLYWNRREERGRFLQEGSRDVMGLAAEFGLRNGISFPLHR 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFELTGR 189
           A    G+M      R   RD L E   L ++ +N      +   +           LT R
Sbjct: 128 AAGGKGIMSFIISERA-SRDLLLESSPLLSWMSNYIFEAAIRIVRVSLREDDPQEALTAR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL   +EGKTS EIA ILGI+   VN ++  + RKT +  R  AI   V + I+
Sbjct: 187 ETECLFLATEGKTSGEIACILGITERPVNYHLNQVTRKTGSMNRCQAIIKGVSSGIL 243


>gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 222

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 39/64 (60%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H    F+LT REV+ L W++ GKT+ +IA IL +S  TVN ++  I  K   +TR+ A 
Sbjct: 153 THLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAAT 212

Query: 238 AYAV 241
           + A+
Sbjct: 213 SVAL 216


>gi|291301939|ref|YP_003513217.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571159|gb|ADD44124.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D      +   E   PV       F      +         + +   
Sbjct: 53  PDVVLMDIRMPRMDG-VAATKAIVEAKLPVRVLILTTFDLDEYVVGALRAGAAGFLAKDV 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++    L    LL  +   + +           LT RE E L 
Sbjct: 112 PAEDLVAAIRSVSSGEAVVAPRILRR--LLEKFVDRLPEPDGATPASLEVLTEREREVLI 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G ++ EIA  L +S  TV  ++  ++ K   + R  A+  A    +V
Sbjct: 170 LVAKGMSNTEIAKELTVSETTVKTHVGHVLTKLGVRDRVQAVVLAYETGLV 220


>gi|226364726|ref|YP_002782508.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243215|dbj|BAH53563.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 230

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 8/216 (3%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV----RCM 90
           R++ +D        +  +        F++V       +  D++        L+    + +
Sbjct: 7   RVLLVDDQELVRSGLRRILRR--KDGFVIVGECADGSEVPDAVAEHTPDVVLMDLRMKRV 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
              E  +    +  P  +         + ++           L    A   I  +    +
Sbjct: 65  DGIEATRALRSVAAPPPVLVLTTFDDDDLLSGSLRAGAAGFILKDSPAEDLIRAVRTVAE 124

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G   L   +    +LA Y+  +  S D    +  ELT RE++ L  I  G ++ EI   L
Sbjct: 125 GGACLDPAVTGR-VLATYRT-VAPSTDGERNRLTELTARELDVLALIGRGHSNSEIGREL 182

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GIS  TV +++  I  K   + R+ AI YA  + IV
Sbjct: 183 GISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGIV 218


>gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 231

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 17/187 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLP-----ENITPPAGMD 127
            ++  + P  ++  + + + D Y     + + P     PV          + I       
Sbjct: 43  ELIEKEIPDLIISDIMMPQVDGYQFLGKLREDPRYQSLPVVFLTARGMTSDRIQGYHAGC 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL---------LAAYQANMFKSYDV 178
           + Y S  FD   +   +  L  + ++ ++     + L         + A           
Sbjct: 103 DAYLSKPFDPEELEAIVKNLLERRKVSIKASSESVKLEEIAQEIREIKAQIGQQPHLVTT 162

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 ELT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + 
Sbjct: 163 PSPIKIELTPREQSVLDLVAEGLMNKEIASRLNTSVRNVEKYVSRLFSKTGTNSRTELVR 222

Query: 239 YAVRNNI 245
           +A+++ +
Sbjct: 223 FALKHGL 229


>gi|254249338|ref|ZP_04942658.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|124875839|gb|EAY65829.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
          Length = 288

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN------MFKSYDVHWGKDFELTGREV 191
               +G++ L      +  D +  +    A  A+      M +  D        LT RE 
Sbjct: 173 RAGNLGVLTLVRDTTPLDADEISRLRAPCASLAHAAHAYLMPRLADPIAPVGTGLTLRER 232

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W ++GKT+ EI +I GI+  TV  ++ + + K     ++ A   A    ++
Sbjct: 233 EVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLGLL 287


>gi|107027317|ref|YP_624828.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691286|ref|YP_836819.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170736675|ref|YP_001777935.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105896691|gb|ABF79855.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116649286|gb|ABK09926.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
 gi|169818863|gb|ACA93445.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 237

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN------MFKSYDVHWGKDFELTGREV 191
               +G++ L      +  D +  +    A  A+      M +  D        LT RE 
Sbjct: 122 RAGNLGVLTLVRDTTPLDADEISRLRAPCASLAHAAHAYLMPRLADPIAPVGTGLTLRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W ++GKT+ EI +I GI+  TV  ++ + + K     ++ A   A    ++
Sbjct: 182 EVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLGLL 236


>gi|209550642|ref|YP_002282559.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536398|gb|ACI56333.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 305

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 137 VARIRIGLMLLFPKGRIILRDR-LWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192
            A  R G++ +   G+  L+   L  IG    L    A   +S D    + F LT RE E
Sbjct: 191 AAAGRDGIISIAHAGQAALQLAFLGAIGPDEYLFRLTAANQRSDDEMLRQRFSLTQRESE 250

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L WI++GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 251 VLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298


>gi|206562058|ref|YP_002232821.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
 gi|198038098|emb|CAR54046.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
          Length = 237

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHWGKDFELTGREV 191
               +G++ L      +  D +  +         AA+   M +  D        LT RE 
Sbjct: 122 RAGNLGVLTLVRDTTPLDADEISRLRAPCASLSHAAHAYLMPRLADPIAPVGTGLTLRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W ++GKT+ EI +I GI+  TV  ++ + + K     ++ A   A    ++
Sbjct: 182 EVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLGLL 236


>gi|167753032|ref|ZP_02425159.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216]
 gi|167659346|gb|EDS03476.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216]
          Length = 216

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 80/219 (36%), Gaps = 13/219 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD-----WPFDLV 87
           L R+I +D    +   M  L +        +V      E+ L  + +++       F + 
Sbjct: 3   LCRIILVDDHSLFRSGMRGLLDRY--DGIRVVGEASTGEEFLAMLPATEADVVFMDFAMP 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                   +K   +      +   +F                +      +  +   +  +
Sbjct: 61  GMNGAETTEKALALEPGLKVITLSMFGDENYYSRMVQAGAKGFLMKDSPMDEVLRAIETV 120

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G     + L  +       + M  +   + G D  L+ RE+E L  +  G ++ EIA
Sbjct: 121 AAGGTYFCEEVLRSLA------SRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS+ TV+ + A+I+ KT  K  +  + YAVR+ +V
Sbjct: 175 DELFISKRTVDKHRANILEKTGCKNTASLVVYAVRHGLV 213


>gi|163800212|ref|ZP_02194113.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
 gi|159175655|gb|EDP60449.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
          Length = 216

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            LL  Y+    +S  +    + ELT RE++ L  + EG ++ EIA  L IS +T+ +++ 
Sbjct: 136 QLLTYYKGKELQSM-IEPATEVELTRREIQVLKMLKEGGSNIEIADSLFISEHTIKSHLY 194

Query: 223 SIMRKTATKTRSGAIAYAVRN 243
           +I RK   K R+ A  +A RN
Sbjct: 195 NIFRKIEVKNRTQATRWAKRN 215


>gi|295680777|ref|YP_003609351.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440672|gb|ADG19840.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 222

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LA   A    S      + FE LT RE+E L  +++G  + EIA  L IS NTV  +++S
Sbjct: 138 LARLLAETRPSRQKAPAEPFEALTLREIEVLAMLADGLGNKEIARQLDISDNTVKFHLSS 197

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K     R+ A+   +R+  +
Sbjct: 198 IFGKLGATNRTEAVMLGMRHGFI 220


>gi|330879892|gb|EGH14041.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 240

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L   GR I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEGGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|294851589|ref|ZP_06792262.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|294820178|gb|EFG37177.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 238

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ +L      +M++  DV       
Sbjct: 115 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMLTNLLHLSMYERVDVPAISCIG 174

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234

Query: 243 NNIV 246
             ++
Sbjct: 235 FGLL 238


>gi|291300526|ref|YP_003511804.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569746|gb|ADD42711.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 65/183 (35%), Gaps = 17/183 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKY---------YNVLQRPTELF----CPVFHTLPENITP 122
            +V    P  ++  + +   D           +  +Q            VF  L      
Sbjct: 42  RLVDEHHPDVVLMDLRMPRMDGAEATGRIKAAHPEVQIVVLTTYSDDESVFAALKAGARG 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
               D     +   +A +R G   L P  +  L D L               +       
Sbjct: 102 YLTKDAGGEEIAAAIAAVRDGAAQLAPDVQRRLVDALAS----GDKTDTSEPAKPPRTDL 157

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E LT I+ G+++ EIA  L IS  TV  +I ++  K A + R+ A+ YA R
Sbjct: 158 PDGLTKRESEVLTLIAAGRSNAEIARQLYISEATVKTHINNLFTKAALRDRAQAVTYAYR 217

Query: 243 NNI 245
           + +
Sbjct: 218 HGL 220


>gi|222109223|ref|YP_002551488.1| two-component transcriptional regulator LuxR family [Agrobacterium
           vitis S4]
 gi|221738497|gb|ACM39362.1| two-component transcriptional regulator LuxR family [Agrobacterium
           vitis S4]
          Length = 240

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 16/231 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + + R        +       +    G   ++        +     +V + WP       
Sbjct: 8   EFMERCDNQKSVDNLFSDFGTVIAKRGFHSYIYTGLPAVGDDVKHYVVKNAWPPGWTEQF 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVF--------------HTLPENITPPAGMDNRYCSLTFD 136
                     V +       P                  + +        D     + FD
Sbjct: 68  EGLNYFADDPVSRWSLSQSKPFTWKTAREETKATARTKEIQQEADRYRLCDGIVFPM-FD 126

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLT 195
               +  + L       + ++ + ++ LL++Y A    +      + D  LT RE E L 
Sbjct: 127 PNSWQSVISLATDDKGGLAKENIGDLYLLSSYCAMTANNLLRRAEQADHRLTDREKEILQ 186

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W+S GKT  EI  IL ++  +V   +A I      K R   ++ A+R  ++
Sbjct: 187 WVSRGKTDWEIGTILRMTEGSVTQRLARIRDTLGVKNRPQTVSQAIRLGLI 237


>gi|304390336|ref|ZP_07372289.1| possible response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326092|gb|EFL93337.1| possible response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 221

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 14/196 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFC 110
           G +   L R +  Q++     V   D     +  + L  +    +               
Sbjct: 33  GTASEALARLN--QDETAQPQVFLVDISMPGMNGIELVRRLHVLSPTSAVIMISVLTRAD 90

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
            +        T     ++    +  ++ +   G ++  P     L   L +   L A + 
Sbjct: 91  KIREAFRAGATGYFVKEDDPALIAENLGKALAGELVFSPTCSRQLISVLTDDAALVAVKR 150

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +  +  D        LT RE E LT +SE +T+ +IA  L IS NTV  +I SI++K   
Sbjct: 151 HAGEPSDTV------LTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDA 204

Query: 231 KTRSGAIAYAVRNNIV 246
             R+GA+A+ +R  I+
Sbjct: 205 ADRAGAVAHGIRQGII 220


>gi|163847185|ref|YP_001635229.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525026|ref|YP_002569497.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668474|gb|ABY34840.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448905|gb|ACM53171.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 246

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--------DVHWGKDFELTGREVECLT 195
           ++     G  ++ D L E   +A+   + F++         D        L+ RE+E L 
Sbjct: 122 ILRRVAHGEYVINDVLLEEPRVASRILSQFRNLPEVQMLVGDPSIQVFTPLSEREIEVLE 181

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  LGIS  TV N+I+SI+RK +   R+ A+ +A+R   +
Sbjct: 182 RIAAGNSNKEIADALGISTQTVKNHISSILRKLSLNDRTQAVIFALRRGWI 232


>gi|226366081|ref|YP_002783864.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244571|dbj|BAH54919.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 222

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 63/174 (36%), Gaps = 4/174 (2%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +  +V  D    ++  +  + +      L     +    F                +  
Sbjct: 47  LIPDVVLMDIRMPVLDGLEATRRIATDPALSGVRVVVLTTFELDEYVFEAMRAGATGFLV 106

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              + A +   + ++     ++      +  L+A +  +  +    H  +  +LT RE E
Sbjct: 107 KHTEPAELVRAVRVVADGDALLSPSVTRK--LVAEFATHAKRPP--HSSRLDDLTDRERE 162

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +T I+EG T+ EI   L +S  T   +++ I+ K   + R+  +  A    +V
Sbjct: 163 VMTLIAEGLTNAEIGSRLFLSPATARTHVSRILLKLGARDRTQLVVMAYEWGLV 216


>gi|182677961|ref|YP_001832107.1| two component LuxR family transcriptional regulator [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633844|gb|ACB94618.1| two component transcriptional regulator, LuxR family [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 309

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 40/80 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL     +   S +        LT RE E LTW++ GK++ +I  ILG+S  TV+ ++  
Sbjct: 226 LLLRVMEDNTLSPEQTLKTRLNLTSREAEVLTWVARGKSNRDIGEILGLSPRTVDKHLEQ 285

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           +  K   + R  A A A++ 
Sbjct: 286 VYAKIGVENRVAATALAIQT 305


>gi|46199289|ref|YP_004956.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55981321|ref|YP_144618.1| response regulator [Thermus thermophilus HB8]
 gi|46196914|gb|AAS81329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55772734|dbj|BAD71175.1| response regulator [Thermus thermophilus HB8]
          Length = 215

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 31/182 (17%)

Query: 69  FQEQKLDSI-----VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            Q   LD +     +  +WP   V  + +  +D Y             VF  +       
Sbjct: 55  IQMPGLDGVQATQAILKEWPQAKVIMLTMYRQDAY-------------VFEAVKAGARGY 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              D     L   + R+  G             + L +  L      +     +      
Sbjct: 102 LLKDVDARELVDAIRRVHAG-------------EVLLDAELAGHIIQDFRAKKEASQPLH 148

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+ REV+ L  +++G T+ EIA  L +S  TV N ++ I +K     R+ A  YA+R 
Sbjct: 149 AELSEREVQILRLVAQGYTNQEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIRE 208

Query: 244 NI 245
            +
Sbjct: 209 GL 210


>gi|71279244|ref|YP_268811.1| LuxR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144984|gb|AAZ25457.1| transcriptional regulator, LuxR family [Colwellia psychrerythraea
           34H]
          Length = 269

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 38/253 (15%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-------------RWDLFQEQKLDSIV 78
           L      +       + M  + E +G   FL                   +  + +D   
Sbjct: 5   LFNDFSAIQNEGDLLLLMDNVVESLGLDGFLFAYAINGWLPSGEPGEIQRWLSKGIDKKS 64

Query: 79  SSDW--PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP----ENITPPAGMDNRYC- 131
              W  PFD           ++  + +   +   P    L     EN      ++ R+  
Sbjct: 65  LKAWLAPFDRASRKDSDVNRRFDPIRRFMVQQTIPHQFLLTDIIKENKNEYTLVEKRWIN 124

Query: 132 -----------SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VH 179
                      S+   +       +  F K      +   +  L+      ++   D + 
Sbjct: 125 SLIKNNVVNLISIPVQLPPSEYWSLSFFSKNTRYQLESSDKARLMLFAHQLVYHCIDNLQ 184

Query: 180 WGKD------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           W +D       +LT RE +CL W ++GKT++EIA ILG+   T+  YI ++M++   +++
Sbjct: 185 WREDGMKYSIVKLTAREKDCLYWSAQGKTANEIADILGLKTETIRKYIKNVMKRLNARSK 244

Query: 234 SGAIAYAVRNNIV 246
           + A+  A+   ++
Sbjct: 245 TQAVVKAIEFGLL 257


>gi|91223299|ref|ZP_01258565.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|91192112|gb|EAS78375.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 43/79 (54%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y      +  +    + ELT REV+ L  + EG ++ EIA  L IS +T+ +++ +I
Sbjct: 131 LVNYYRGREVNSIIEPAIEVELTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNI 190

Query: 225 MRKTATKTRSGAIAYAVRN 243
            RK   K R+ A ++A RN
Sbjct: 191 FRKLEVKNRTQATSWAKRN 209


>gi|159185350|ref|NP_355660.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159140603|gb|AAK88445.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 245

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 80/243 (32%), Gaps = 31/243 (12%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
             ++                 L    G  +FL+ R    +      I++   P   +   
Sbjct: 6   QFISACSQAGSADRVRSEFAKLIREYGFEYFLVSRRMTGELASAGQILAEHLPDGWLEVY 65

Query: 91  ALSEKDKYYNVLQRPTELFCPV-----FHTLPENITPPA-----------GMDNRYCSLT 134
              + +    V +    +  P         LP  +               G+   Y +  
Sbjct: 66  RAKKYNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRASVFFHDAGRYGLQGGY-AFP 124

Query: 135 FDVARIRIGLMLLFPKGRIIL-----------RDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                  IG + +    R +            R   W +  L+        + DV     
Sbjct: 125 VHGRAGFIGAVFIGGPDRQLPSLHVELLDAATRAVFWRLLDLSGQAHGFSNAPDVSA--- 181

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE+E L  +++G TS EI   L IS +TV+ YI  I R+ + K R   +A A R+
Sbjct: 182 LELTRREMEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRH 241

Query: 244 NIV 246
            ++
Sbjct: 242 GLL 244


>gi|319744296|gb|EFV96660.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 217

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E D     L      P      +   L      P        Y   T  
Sbjct: 54  PDVVVMDLVMPEMDGVEATLALLKDWPEAAILVLTSYLDNEKIYPVIEAGAKGYMLKTSS 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +  +    + I  +                K++D        LT RE + L  
Sbjct: 114 AAEILNAIRKVARGEQAIENE-----------VDKKIKAHDKCPALHEGLTARERDILNL 162

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 163 LAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLV 212


>gi|296268935|ref|YP_003651567.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091722|gb|ADG87674.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 221

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 18/214 (8%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +       +      E VG +       D   E + D ++           + +   D  
Sbjct: 13  VRTGFRMVLNAQPDIEVVGEAGDGQAAIDALGEVEADVVLM---------DVRMPRMDGV 63

Query: 99  YNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
               +       P       F              + +         +  G+ ++     
Sbjct: 64  EATRRICATPGAPRVLILTTFDLDEYAFAAIKAGASGFLLKDVPPNELVNGIRVVHSGDA 123

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++         LL  + A+          +   LT RE E L  +++G ++ EIA  L +
Sbjct: 124 VVAPSTTRR--LLDRFAAH-LPDGQAGRPELDALTAREREVLILVAKGLSNQEIAERLHL 180

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV  ++  ++ K   + R+ AI YA    +V
Sbjct: 181 AEATVKTHLGRVLAKLRLRDRAQAIVYAYETGLV 214


>gi|294628486|ref|ZP_06707046.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. e14]
 gi|292831819|gb|EFF90168.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. e14]
          Length = 231

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 8/176 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPERDGPAKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRR-LLDKYATHLPSGEEPVPDTLHTLTE 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + 
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216


>gi|218662807|ref|ZP_03518737.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 102

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 52/101 (51%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L  +     +  + ++ L A    +      +       LT RE E + W SEGKTS E
Sbjct: 1   MLSGEREEPDQGEIADLLLDAMRIFDKLYEEILTQEMSGRLTQRESEIVKWTSEGKTSAE 60

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 61  IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 101


>gi|271967187|ref|YP_003341383.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510362|gb|ACZ88640.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 3/143 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F      +       + +         +   + ++     I+         L
Sbjct: 81  PKVLVLTTFDLDEYIVEALRAGASGFLLKDVPPDELVQAIRVVAAGDAIVAPSVTRR--L 138

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L  + A +  ++        + LT RE+E L  I+ G ++ EIA  L +S  TV  ++ +
Sbjct: 139 LDRFGARLPSAHQQPTPARLDRLTEREMEVLRLIARGMSNAEIAAELVVSETTVKTHVGN 198

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K   + R  A+  A    ++
Sbjct: 199 VLTKLGLRDRVQAVVLAYETGLI 221


>gi|302548366|ref|ZP_07300708.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465984|gb|EFL29077.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 61/181 (33%), Gaps = 8/181 (4%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 E+    +V  D    +V  +  + + +     + P  +    F           
Sbjct: 49  EVPPLVEELQPDVVLMDARMPIVDGIEATRRLR-ATSAEPPKVIVITTFENDEYVYDALE 107

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +        +I   + L+     ++  + +  +                   +  
Sbjct: 108 AGASGFIRKRAPAQQIAHAIRLVASGDSVLFPEAVARL-------TTGRPPRREAAARVA 160

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++EG T+ +IA +L +S  TV  ++ +++ K     R+ A+  A    
Sbjct: 161 ALTRREAEILRLMAEGLTNQQIAEVLTVSLETVKTHVGNVLTKLGAGNRTQAVILAFEAG 220

Query: 245 I 245
           +
Sbjct: 221 L 221


>gi|311032377|ref|ZP_07710467.1| two-component response regulator LiaR [Bacillus sp. m3-13]
          Length = 210

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 82/204 (40%), Gaps = 20/204 (9%)

Query: 55  YVGASHFLLVRWDLFQEQKLD------SIVSSDWPFDLVRCMALSEKDK---YYNVLQRP 105
            +G + +L  + D+    + D       +     P  ++  + + E D       ++++ 
Sbjct: 14  RIGVTAYLSAQPDIEVVAEADDGSVAIELALEHKPDIILMDLVMKEMDGIEATRRIMEQW 73

Query: 106 TELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            E    +  +  ++      ++     Y   T   + I   +   +    I+  +     
Sbjct: 74  PEAKIIIVTSFLDDEKVYPALEAGATSYMLKTSKASEIANAVRSTYKGQSILEPE----- 128

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
               A +               ELT RE+E L  +++GKT+ EIA  L I+  TV  +++
Sbjct: 129 ---VAGKMMQKMRRKTEILPHEELTNREMEILLLMTQGKTNQEIADELFIALKTVKVHVS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I+ K   + R+ A+ YA ++++V
Sbjct: 186 NILAKLQVQDRTQAVIYAFKHSLV 209


>gi|254486014|ref|ZP_05099219.1| transcription regulator, LuxR family, putative [Roseobacter sp.
           GAI101]
 gi|214042883|gb|EEB83521.1| transcription regulator, LuxR family, putative [Roseobacter sp.
           GAI101]
          Length = 248

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 1/159 (0%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +A+S  D +Y    +  +   P      + +            +    +R     M   
Sbjct: 82  RLAMSRPDPFYWSDAQDLDDLQPAEIAYLDKLKEAGIWPGIAFQVFGPESRNAAVGMCFE 141

Query: 149 PKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           P    +  D L E+ L +      F    D        L+ RE+E L WI++GK++  +A
Sbjct: 142 PGAPRLSPDALLELQLASQCAHQRFCALTDGPKSPYARLSPRELEVLRWIAQGKSNSVMA 201

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+GISR+TV+     +  K     R+ A    +   ++
Sbjct: 202 DIMGISRHTVDTITRRMFEKLEVTDRTRAAVRGISAGLL 240


>gi|209515006|ref|ZP_03263875.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209504632|gb|EEA04619.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 222

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LA   A   +      G+ FE LT RE+E L  +++G  + EIA  L IS NTV  ++++
Sbjct: 138 LARLLAGTRQPRQKASGEPFEALTSREIEVLAMLADGLGNKEIARHLDISDNTVKFHLSA 197

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K     R+ A+   +R+  +
Sbjct: 198 IFGKLGATNRTEAVMLGMRHGFI 220


>gi|296130675|ref|YP_003637925.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022490|gb|ADG75726.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 226

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 2/162 (1%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +     D    VL    ++    F  L    +       R   L   +  +  G 
Sbjct: 64  EATRRIVAEHPDSRVLVLTTF-DVDDLAFAALRAGASGFLLKSARPDELVDAIRTVAAGT 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++ P+    + D L+   L A  +    +       +   LT RE++ L  I+EG ++ 
Sbjct: 123 SVVAPRVLRRMLD-LFAPHLPAGAEDGDPQERTGPHPRLRGLTPRELDVLRLIAEGASNA 181

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++ ++  K   + R  A+  A    +V
Sbjct: 182 EIAAELVVSETTVKTHVGNVFAKLGARDRVQAVIIAYECGVV 223


>gi|269956411|ref|YP_003326200.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305092|gb|ACZ30642.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 220

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  +        L+    L    F      +       + +     
Sbjct: 49  DVVLMDIRMPVMDGIDATRTICADRGLEAVRVLVLTTFEEDAFIVGALRAGASGFLGKGS 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   I   +  +     ++         L+  Y        DV       LT REVE LT
Sbjct: 109 EPGEIIAAIRAVHGGEALLSPTATR--ALIDRYV--RPSPSDVVPQALEHLTEREVEILT 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G ++ EIA  L IS +T   ++  +M K     R+  +  A  N +V
Sbjct: 165 LVGSGLSNAEIADRLVISPHTAKTHVNRVMTKLHAHDRAQLVIAAYENGLV 215


>gi|156742230|ref|YP_001432359.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156233558|gb|ABU58341.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 254

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 7/146 (4%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   V+ +  +         + Y S       +   L  +     +I    L +  +   
Sbjct: 88  VVLSVYESDEQAFNALRAGASAYRSKDVHPDELADVLRRVARGEYVINDVVLDDPKVAGR 147

Query: 168 YQANMFKSY-------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
             +             ++ +     L+ RE+E L  I+ G ++ EIA  L IS  TV N+
Sbjct: 148 VLSQFRNLPQDVTSLQEMEFPLFTPLSDREIEVLERIAAGGSNREIAEALHISTQTVKNH 207

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           I+SI+RK +   R+ A+ YA+R   +
Sbjct: 208 ISSILRKLSLNDRTQAVLYALRRGWI 233


>gi|298486382|ref|ZP_07004444.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159110|gb|EFI00169.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 238

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L   GR I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 141 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 197

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 198 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 237


>gi|167838741|ref|ZP_02465600.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 137

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 168 YQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
             A M +  D    +    +LT RE E L W   GKT+ EI+ ILGIS  T+  ++++  
Sbjct: 57  VHAAMQELLDCRLRRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTIVFHLSNAA 116

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R+ A+  A    ++
Sbjct: 117 RKIGANNRAQAVVMASARGLI 137


>gi|262203353|ref|YP_003274561.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262086700|gb|ACY22668.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 10/174 (5%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYN-----VLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
           V+   P  +V  + +   D          L  P  +         + ++           
Sbjct: 55  VAEHSPDVVVMDLRMRNVDGITATSMLAALNDPPPVLVLTTFDDDKLLSGALRAGAAGFI 114

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L    A       L++    ++      +  +         +S         ELT RE +
Sbjct: 115 LKDSPAES-----LIWAVRAVVRDGAFLDPAVTGRVLTGYRRSTTGDIATPDELTERETD 169

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G+T+ EIA  LGIS  TV ++I  I  K   + R+ AI YA  +++V
Sbjct: 170 VLRLVARGRTNAEIAAGLGISEVTVKSHINHIFTKLDLRDRAAAIVYAFDHSLV 223


>gi|219849670|ref|YP_002464103.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543929|gb|ACL25667.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 216

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 79/217 (36%), Gaps = 5/217 (2%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +D        +  L +       +    +  Q  +L   +  D     +R   +
Sbjct: 1   MIRILLVDDQTLVRQGIQTLLDLEEDLTVVGAAANGQQALELAEQLQPDVVLMDIRMPVM 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFP 149
                   + +R  ++   +  T  ++     G+      Y     D   I   + ++  
Sbjct: 61  DGVAATREITRRWPQIGVIILTTFDDDEYVIEGLKAGARGYMLKDADSHEIVEAVRIVTR 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +I      ++       A           +   LT RE++ L  I+ GK++ EIA  
Sbjct: 121 GEALIQPSITRKVLAEFTRLAGGHTPVTSPLTEP--LTEREMDVLHGIAAGKSNREIADQ 178

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV N+++S++ K   + R+ AI  A    ++
Sbjct: 179 LCISEGTVKNHVSSLLAKLDVRDRTQAIIRARELRLI 215


>gi|15616190|ref|NP_244495.1| two-component response regulator involved in degradative enzyme
           [Bacillus halodurans C-125]
 gi|10176252|dbj|BAB07347.1| two-component response regulator involved in degradative enzyme
           [Bacillus halodurans C-125]
          Length = 236

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L    +     +    +L   V  +  G   + PK    L      +      +++
Sbjct: 98  VTHVLKTGASGYLLKEMDADALIEAVKVVAQGGAYIHPKVTHNLIKEYRRLVNEDEQESS 157

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                +V + K    LT RE E L  +++G ++  I   L IS  TV N++++I++K   
Sbjct: 158 EIGFKEVEYRKPLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNV 217

Query: 231 KTRSGAIAYAVRNN 244
             R+ A+  +++N 
Sbjct: 218 NDRTQAVVESIKNG 231


>gi|1706361|sp|P54662|DEGU_BREBE RecName: Full=Transcriptional regulatory protein degU
 gi|710496|gb|AAC41439.1| transcriptional activator protein [Brevibacillus brevis]
          Length = 236

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L    +     +    +L   V  +  G   + PK    L      +      +++
Sbjct: 98  VTHVLKTGASGYLLKEMDADALIEAVKVVAQGGAYIHPKVTHNLIKEYRRLVNEDEQESS 157

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                +V + K    LT RE E L  +++G ++  I   L IS  TV N++++I++K   
Sbjct: 158 EIGFKEVEYRKPLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNV 217

Query: 231 KTRSGAIAYAVRNN 244
             R+ A+  +++N 
Sbjct: 218 NDRTQAVVESIKNG 231


>gi|324326299|gb|ADY21559.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 216

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 77/213 (36%), Gaps = 10/213 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+     +   + + ++     E VG +          Q ++ D +V  D     +  + 
Sbjct: 7   LVEDHHIVRRGLIFFLKTREEFEIVGEAENGEDALTFVQTKRPD-VVLMDLSMPKMDGIE 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +++ K Y+   +   L    F      +       + Y        ++   ++ +    
Sbjct: 66  ATKRIKQYDETIKI--LILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAVHEGN 123

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                       LL        K           LT RE E L  I++G+++ EIA +L 
Sbjct: 124 TNFHPK--VTPALLGRSVVKKEKENPFSM-----LTKREQEVLREIAKGRSNKEIAAVLH 176

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 177 ITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|158339385|ref|YP_001520562.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158309626|gb|ABW31243.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 208

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE+E L  +S+G ++ EIA  L IS  TV  +I +I+ K   K R+ A+  A++
Sbjct: 142 DSDLTERELEVLQLLSKGNSNQEIAAALTISEGTVKFHINNILSKLGVKDRTQAVIMALK 201

Query: 243 NNI 245
             +
Sbjct: 202 KGL 204


>gi|171320496|ref|ZP_02909525.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171094259|gb|EDT39337.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 234

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE + L W ++GKT+ EI++IL IS +TVN ++ +I+ K  T  +  A+A A  
Sbjct: 171 DPTLTQRETDVLKWTADGKTAYEISLILSISESTVNFHVKNIVAKLGTANKVHAVAKAAL 230

Query: 243 NNIV 246
             ++
Sbjct: 231 MGML 234


>gi|222087763|ref|YP_002546300.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725211|gb|ACM28367.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 246

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 20/191 (10%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           + R  +  +  +  +  +  PF     MA  + D    + +R  ++              
Sbjct: 68  VARKYVLVDPTMRYLGQAQRPFRWRDAMAALKGD---PLRRRMEQMM---------ADAR 115

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-------NMFKS 175
             G+ + Y           +G M +      +    L     +A           +  + 
Sbjct: 116 ANGLVDGYI-FPIFGRSGLLGTMTIGGNSVDLSPAELSLFDAVAKKVFWRLLELRDEARP 174

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +     + +LT RE+E L  ++EG TS +I+  L IS +TV+ Y+ SI  K   + R  
Sbjct: 175 LEEAPAIEAKLTRREIEVLNHLAEGMTSMDISRTLKISNHTVDWYMNSIQDKLNARNRQH 234

Query: 236 AIAYAVRNNIV 246
            +A A RN +V
Sbjct: 235 IVAIAFRNGLV 245


>gi|288573855|ref|ZP_06392212.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569596|gb|EFC91153.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 222

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 40/80 (50%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A    N F            L+ RE+E L W+++G    EIA  L +S  TV N+I+ I+
Sbjct: 133 AGKLLNCFSEDTSRERGMSRLSERELEVLYWLAQGLNGQEIAERLSLSDKTVKNHISHIL 192

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K     R+ A+A+A R+ +
Sbjct: 193 AKLKVSDRTQAVAWAWRSGL 212


>gi|289550400|ref|YP_003471304.1| Two component transcriptional regulator VraR [Staphylococcus
           lugdunensis HKU09-01]
 gi|315660134|ref|ZP_07912991.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|289179932|gb|ADC87177.1| Two component transcriptional regulator VraR [Staphylococcus
           lugdunensis HKU09-01]
 gi|315494815|gb|EFU83153.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 209

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
            +   +    + +    +   +  +  E+      +D   + Y   T     I   +   
Sbjct: 60  DMDGVEATTQIKKEMPHIKVVMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIAEAVRKT 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +    +   + L ++      +  M K  +++      LT RE+E L  I++G ++ EIA
Sbjct: 120 YHGESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIA 169

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 170 SASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|255025548|ref|ZP_05297534.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J2-003]
          Length = 117

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++ 
Sbjct: 54  LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 112


>gi|289626430|ref|ZP_06459384.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649584|ref|ZP_06480927.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866354|gb|EGH01063.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 240

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L   GR I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|327440878|dbj|BAK17243.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 209

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 11/165 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIR 141
            D V  +    +     + Q P      V   + ++   PA       Y   T +  +I 
Sbjct: 53  MDNVMPIKTGAEATAEILAQWPQAKVMIVTSFIDDDKLYPALEAGAVSYILKTSNAKQIA 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++  +    +         M +           LT RE+E L  ++ G 
Sbjct: 113 DAIRKTMDGETVLEPEATTRV---------MARMRGTAPALHNHLTDREMEVLLCMARGL 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EIA  L I+  TV  ++++I+ K   + R+ A+ YA +N +V
Sbjct: 164 ANQEIAEELFIALKTVKTHVSNILSKLEVQDRTQAVVYAFQNGLV 208


>gi|299821874|ref|ZP_07053762.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817539|gb|EFI84775.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 241

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 53/133 (39%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          +     L   +  +  G   + PK  I L      +   ++ Q N
Sbjct: 104 VSSALKTGAVGYLLKEMDANELIEAIKVVYKGGAYIHPKAAIKLIREYRNLASSSSAQGN 163

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++GK++  I   L IS  TV N+++SI++K    
Sbjct: 164 YGYRQPEVNMPLHLLTHRECEVLQLLTDGKSNRSIGEALFISEKTVKNHVSSILQKMKVN 223

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A+++ 
Sbjct: 224 DRTQAVVTAIKHG 236


>gi|37520140|ref|NP_923517.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211133|dbj|BAC88512.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 217

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 12/170 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPA---GMDNRYCSLTFD 136
           P  ++  + L   D    +++   E   +   V  +  E     A      + YC     
Sbjct: 51  PQLVLLDIGLPGLDGRQTLVRLKQEHPEIRVLVLTSREEAGLVQAMLQAGADGYCLKGIG 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             R+   +  +             +  +LA  ++    +          LT RE E L W
Sbjct: 111 PDRLLTVIREVSAGNGWF------DAKVLAQVRSAFAVAPSEPPANAAALTEREREVLGW 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G ++ EI   L IS  TV  ++ +I+RK     R+ A   A+   ++
Sbjct: 165 IARGASNPEIGRQLHISSGTVRVHVHAILRKLGATDRTQAAVLALEKGLI 214


>gi|326331827|ref|ZP_08198114.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
 gi|325950324|gb|EGD42377.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
          Length = 224

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 58/171 (33%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  +   +    L+    L    F      +       + +     
Sbjct: 50  DVVLMDIRMPVMDGIEATSTIRADGDLESTRVLILTTFEEDEYLLAALRAGADGFIGKGA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   I  G++ +     ++       +                   +  ELT RE E L 
Sbjct: 110 EPDEIVRGVLAVRDGKSLLSPAATRSLISRYLKVDRRATGGRFDARRLEELTPREREILV 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L IS  T   ++ ++M K     R+  + +A  + +V
Sbjct: 170 LVAGGLSNQEIADELVISPFTAKTHVNNMMTKLDAPGRAQLVIWAYESGLV 220


>gi|312963163|ref|ZP_07777648.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311282674|gb|EFQ61270.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 240

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 14/167 (8%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRY-CS 132
           S++P +       ++      V+        P       F   P   T           +
Sbjct: 56  SNYPNEWSHLYKQAKFADVDPVVAHCQRSVLPFVWKETAFQGTPHLWTLAQSCGVHLGWT 115

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------- 185
                 R    ++ L    R I  + L+E    A +  +   +   H   +         
Sbjct: 116 QPLHGPRGVFSMLTLSRSKREISPEELYEKAGNALWLCHAMHTVVAHKYANEPDAVPCNN 175

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           LT RE+E L W + GKT+ EIA IL +S  TV  +  S MRK     
Sbjct: 176 LTPRELEVLRWSALGKTAGEIAKILCLSERTVGFHNCSSMRKLGVNN 222


>gi|207722648|ref|YP_002253084.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206587830|emb|CAQ18412.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 201

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ REVE L W + GKTS EIA ILG+S+ TV+ +I +  +K    TR  A+  A   
Sbjct: 137 VPLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSA 196

Query: 244 NIV 246
            I+
Sbjct: 197 GII 199


>gi|89100033|ref|ZP_01172903.1| response regulator [Bacillus sp. NRRL B-14911]
 gi|89085267|gb|EAR64398.1| response regulator [Bacillus sp. NRRL B-14911]
          Length = 210

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 20/203 (9%)

Query: 55  YVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL----QR 104
            +G S +L  + D          +    +     P  ++  + + E D            
Sbjct: 14  RIGVSSYLSAQPDIEVIGEADNGRTAIDLALELRPDIILMDLVMKEMDGIEATRGIIEAW 73

Query: 105 PTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           P      V   L +    PA       Y   T   + I   +   F    ++  +   ++
Sbjct: 74  PEAKVIIVTSFLDDEKVYPALEAGASSYMLKTSKASEIADAVRATFHGQSVLEPEVTGKM 133

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +    +  +            ELT RE+E L  ++EGKT+ EIA  L I+  TV  +++
Sbjct: 134 MVKMRQKQTVLP--------HEELTSREMEILLLMTEGKTNQEIADELFIALKTVKTHVS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           +I+ K   + R+ A+ YA ++++
Sbjct: 186 NILSKLQVQDRTQAVIYAFKHSL 208


>gi|158318087|ref|YP_001510595.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113492|gb|ABW15689.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 244

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 67/179 (37%), Gaps = 15/179 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDN 128
            ++  + P  ++  + +   D    + +   ++  P        F              N
Sbjct: 68  PLIRENTPDVVIMDIRMPRVDGLAAIREILADVADPPKILVLTTFELDDYVYEALRSGAN 127

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELT 187
            +       A I   +  +     ++  + +        Y A    + + H   +   LT
Sbjct: 128 GFLLKRARPAEIVQAVRTIVSSESLLFPEAIR-------YMAGKRPNREAHETMRRAVLT 180

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ISEG +++EIA  L +   TV ++++S++ K   + R+ A+  A  +  V
Sbjct: 181 DREADVLRLISEGLSNNEIANRLYLGAQTVKSHVSSVLAKLGARDRTQAVIIAYESGFV 239


>gi|197344637|gb|ACH69668.1| LuxR family transcriptional regulator [uncultured proteobacterium]
          Length = 246

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            DV      +L+ RE ECL WI+EGK++  I+ +L IS  TV  +I ++  K    TR  
Sbjct: 175 PDVETTLRPKLSRREHECLKWIAEGKSNGVISDLLKISEPTVEFHIRNLFTKLNVATRVQ 234

Query: 236 AIAYAVRNNIV 246
           A    V   ++
Sbjct: 235 AAVVGVLMGLI 245


>gi|90415637|ref|ZP_01223571.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium
           HTCC2207]
 gi|90332960|gb|EAS48130.1| hypothetical protein GB2207_09976 [marine gamma proteobacterium
           HTCC2207]
          Length = 302

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            + +    + F LT RE E LTWIS+GKT+ EIA+IL  S  T N ++  I RK   + R
Sbjct: 228 PNDEELLREKFGLTAREAEVLTWISKGKTNHEIAIILDFSPRTANKHLEQIFRKLNVENR 287

Query: 234 SGAIAYAVR 242
           + A A ++R
Sbjct: 288 TTAAAVSLR 296


>gi|262201875|ref|YP_003273083.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262085222|gb|ACY21190.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 218

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 39/78 (50%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A + +S      K   LT RE E L  +++G ++  I   L IS +TV  +I +I+RK 
Sbjct: 141 AAIVLRSVSGDVDKPEALTDREREVLRLLADGLSNKRIGQTLFISESTVKFHIRNIIRKL 200

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+  A +  ++
Sbjct: 201 GVSKRTDAVYIASKRGLI 218


>gi|323489235|ref|ZP_08094467.1| NarL family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
 gi|323397122|gb|EGA89936.1| NarL family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
          Length = 211

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 12/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIR 141
            D+V  +    +     + Q P      V   L ++   PA       Y   T   +RI 
Sbjct: 53  MDMVMPIMNGAEATKAIIEQWPEAKIMIVTSFLDDDKVYPALQAGAVSYILKTSKASRIA 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++  + + +          M K          +LT RE+E L  ++ G 
Sbjct: 113 DSIRETMNGTPVLEPEVMTK----------MMKQMRHERVLHDDLTEREMEILLLLARGL 162

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ E+A  L I+  TV  ++++I+ K     R+ A+ YA ++ ++
Sbjct: 163 TNQEVADQLFIAVKTVKTHVSNILAKLEVHDRTQAVIYAFQHKLI 207


>gi|256396518|ref|YP_003118082.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362744|gb|ACU76241.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 228

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 5/173 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    L+  +  + +    +V   P  L    F+             + +     
Sbjct: 53  DVVVMDIRMPLLDGIQATRRLAGPDVADPPKVLVVTTFNVDAYVYDAFRAGASGFLLKDA 112

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVE 192
             A +  G+  +     ++         L+  +   +         ++     LT RE+E
Sbjct: 113 PPAEMVNGVRTVARGESLLAPAVTR--TLIGRFAERLRPGDPARAAREAVTRTLTPRELE 170

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
               I+EG ++ EIA  L I+  TV  Y++ I+ K   + R  A+  A R  +
Sbjct: 171 VFELIAEGLSNAEIAASLFITPETVKTYVSRILTKLDLRDRVQAVVLAYRIGL 223


>gi|258650899|ref|YP_003200055.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554124|gb|ACV77066.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 241

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 2/162 (1%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  ++      VL    +L    F  L    +     D     L   +  I  G 
Sbjct: 65  EATRRIMAADPQARILVLTTF-DLDEYAFAALRGGASGFLLKDAPVAELVHAIRVIAQGH 123

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L+ P+   +L D  +   L      +         G    LTGRE E L  ++ G+++ 
Sbjct: 124 ALVAPRITRLLLDA-YAPQLPDPLAGDRPGPDRAVVGPGGSLTGREHEVLLLLARGRSNA 182

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV +++ +++ K   + R  A+ YA  + ++
Sbjct: 183 EIATDLVVSEVTVKSHVGAVLHKLDLRNRVAAVIYAYEHGLI 224


>gi|226307737|ref|YP_002767697.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226186854|dbj|BAH34958.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 239

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            + + P    +    +L F    +   L + F    ++  DR+ E+   ++   +     
Sbjct: 111 TDVLRPSGYAEGASVALGFSGREVTGLLHMSFADSGVV--DRVREVVAASSAACSRVVGD 168

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            V   +   L+ RE++ L  ++ G  + EIA  L +SR TV  ++ +I  KT T +R  A
Sbjct: 169 QVALDR-VHLSPREIQVLQLVARGAGNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQA 227

Query: 237 IAYAVRNNIV 246
              A +  ++
Sbjct: 228 AVRAAKWGLI 237


>gi|206601912|gb|EDZ38394.1| Putative two component transcriptional regulator, LuxR family
           [Leptospirillum sp. Group II '5-way CG']
          Length = 211

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F +           D    SL   +    +G + L P    +  +R+   G        
Sbjct: 92  IFSSFSAGADGYCLKDTTVDSLLLAIRAADMGSVYLDPAIAHLALNRIRLPG-------- 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                  H   D  L+ RE E L  +S+G ++ EI  I GIS +TV  +I SI+ K +  
Sbjct: 144 -------HPENDNPLSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSAS 196

Query: 232 TRSGAIAYAVRNNIV 246
           TR+ A   A++  ++
Sbjct: 197 TRADAAVKAIKKGLI 211


>gi|237797654|ref|ZP_04586115.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020504|gb|EGI00561.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 240

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            R I  ++ + I  L     ++ +           LT RE+E L W  +GKT+ EI++I 
Sbjct: 147 ERAISAEQKYLISSLMPVLHSVARGLKFSSR---GLTHRELEVLQWARDGKTAWEISMIR 203

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 204 EVSESTVKFHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|83749508|ref|ZP_00946497.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|207738514|ref|YP_002256907.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83723820|gb|EAP71009.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|206591882|emb|CAQ58788.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 201

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ REVE L W + GKTS EIA ILG+S+ TV+ +I +  +K    TR  A+  A   
Sbjct: 137 VPLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSA 196

Query: 244 NIV 246
            I+
Sbjct: 197 GII 199


>gi|315657544|ref|ZP_07910426.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492016|gb|EFU81625.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 221

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                  T     ++    +  ++ +   G ++  P     L   L +   L A + +  
Sbjct: 94  EAFRAGATGYFVKEDDPALIAENLGKALAGELVFSPTCSRQLISVLTDDAALVAVKRHAG 153

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  D        LT RE E LT +SE +T+ +IA  L IS NTV  +I SI++K     R
Sbjct: 154 EPSDTV------LTPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADR 207

Query: 234 SGAIAYAVRNNIV 246
           +GA+A+ +R  I+
Sbjct: 208 AGAVAHGIRQGII 220


>gi|219847289|ref|YP_002461722.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219541548|gb|ACL23286.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 217

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 60/162 (37%), Gaps = 8/162 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGL 144
           ++  +   E  +    +   +++         + + P        Y         +   +
Sbjct: 58  VMPGIDGVETTRRIKAVSPSSQVIVLTSFADDDKVFPAIKAGAISYLLKDISPEELAHAI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++          +AA     F +   +     +LT RE++ L  +++G ++ 
Sbjct: 118 RAARRGEAVLHP-------AVAAKLMQEFNTPRPNEPPVEQLTPREMDVLRLVAKGMSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  +I++I+ K     R+    YA+R  +V
Sbjct: 171 EIADTLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKRLV 212


>gi|331266987|ref|YP_004326617.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|326683659|emb|CBZ01277.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 210

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           P  +V  + + E +     L    + P      V   L      P               
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAG---------- 96

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTW 196
             R  ++       ++   R    G LA  Q    K   +  H     ELT RE + L  
Sbjct: 97  -ARGYMLKTSSADELLNAVRKVAAGELAIEQEVSKKVEYHRNHIELHEELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|320329504|gb|EFW85496.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330889863|gb|EGH22524.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330986211|gb|EGH84314.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 240

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L   GR I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|299537605|ref|ZP_07050898.1| two-component response regulator-like protein [Lysinibacillus
           fusiformis ZC1]
 gi|298726974|gb|EFI67556.1| two-component response regulator-like protein [Lysinibacillus
           fusiformis ZC1]
          Length = 215

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 69/175 (39%), Gaps = 13/175 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNR---Y 130
           +  S  P  ++  + + E D       +  +  ++   +  +  +       M+     Y
Sbjct: 42  LAESIQPDIILMDLVMPEMDGIQATKRIKAKFPQIEILMLTSFSDRDHVVPAMEAGAAGY 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                +   + + +  +      +  +           + +  +S +     +  LT RE
Sbjct: 102 QLKDIEPDELVLSIRRIMRGENTLHPEA------TTTLEMDRQESQNAPHLLN-PLTPRE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  +++GK++ EIA  L ++  TV  +I++I  K   + R+ A  YAV++ +
Sbjct: 155 QDVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209


>gi|297155595|gb|ADI05307.1| putative response regulator [Streptomyces bingchenggensis BCW-1]
          Length = 228

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 11/179 (6%)

Query: 77  IVSSDWPFDLVRCMALSEKDK--------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           + S+  P  +V  + +   D             L     L    F T            +
Sbjct: 43  LTSAHAPDVVVMDIRMPGTDGLAATSAICTDPELSATRVLILTTFETDEYVARALRAGAS 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELT 187
            +         +  G+  +     ++         L+  + A       +   +    LT
Sbjct: 103 GFLGKDVGADELLTGIRTVASGDSLLSPVATR--ALITRFLAAPDPEAPLAPSELLASLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +   +EGK++ EIA +L +S  TV  ++   M K   + R+  +  A ++ +V
Sbjct: 161 AREREVMALAAEGKSNAEIAEVLFVSPLTVRTHVQRAMNKLGARDRAQLVVIAYQSGLV 219


>gi|289523038|ref|ZP_06439892.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503581|gb|EFD24745.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 274

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 73/181 (40%), Gaps = 14/181 (7%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           +++  ++SS  P  +V    L +KD    + +   E         P         +N Y 
Sbjct: 85  EEMRDVISSLRPDVIVYDDELLDKDSIGPIRELSKEFT-------PFRCVLLTSKENNYH 137

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-------DVHWGKDF 184
               ++ +  I   +L       L   +  +     Y     ++Y       +    + +
Sbjct: 138 DRLQNLRKSGIYGCILKSSKAEDLLSAIRNVAKADPYNDPRLETYKKTVSLIEEDTAQLY 197

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L W+S+G ++  IA I+ +S  TV N+++ I++K     R+ A  +A +  
Sbjct: 198 HLTPREKEVLYWLSQGFSNQNIAKIMFLSEKTVKNHVSRILKKLDFPDRTQAAVFAWKAG 257

Query: 245 I 245
           +
Sbjct: 258 L 258


>gi|300693076|ref|YP_003749049.1| two component heavy metal response transcriptional regulator
           [Ralstonia solanacearum PSI07]
 gi|299075113|emb|CBJ34395.1| Two component heavy metal response transcriptional regulator
           [Ralstonia solanacearum PSI07]
          Length = 201

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ REVE L W + GKTS EIA ILG+S+ TV+ +I +  +K    TR  A+  A   
Sbjct: 137 VPLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSA 196

Query: 244 NIV 246
            I+
Sbjct: 197 GII 199


>gi|254690492|ref|ZP_05153746.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 6 str. 870]
          Length = 235

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ ++      +M++  DV       
Sbjct: 112 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 171

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 231

Query: 243 NNIV 246
             ++
Sbjct: 232 FGLL 235


>gi|88807485|ref|ZP_01122997.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           WH 7805]
 gi|88788699|gb|EAR19854.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           WH 7805]
          Length = 227

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           PE  T           +   +     G++ +   G+ I  D +  +  +A       +  
Sbjct: 94  PETRTLVFLHRETQAVVREALDAFAEGVIFISSLGKGIDGDFIRSLSAIAEGGNYYPQDV 153

Query: 177 DVHWGKD-----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
               G +      EL+ RE+E L  +S G T+ EIA  L +S  TV  +++SI+ K   K
Sbjct: 154 QTAAGYERIEVLPELSEREIEVLKVLSCGMTNKEIADTLFVSAETVKTHVSSIIGKMGVK 213

Query: 232 TRSGAIAYAVRNNI 245
            R+ A+  A++  I
Sbjct: 214 DRTQAVIKAIKAGI 227


>gi|302388953|ref|YP_003824774.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
 gi|302199581|gb|ADL07151.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
          Length = 213

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     D   +   +  +      I      +  L  A  A   +           LT 
Sbjct: 102 GYILKDIDPQALVEAVRAVSRGETYI------QPTLTRALIAEYNRLSQPISRASRPLTA 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E + +I+EG ++ EI+  LGIS  TV N+++SI+RK     R+    YA++NN+V
Sbjct: 156 REKEVMAYIAEGMSNIEISEKLGISEKTVKNHVSSILRKLNLMDRTQVAVYALKNNLV 213


>gi|294628631|ref|ZP_06707191.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292831964|gb|EFF90313.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 213

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 16/161 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +R +          ++   TE    V   L          D    +L   +  +  G 
Sbjct: 67  EALRRLRDLGNAARVLIVTSFTEQRT-VVPALRAGAAGYVYKDVDPEALAGAIRSVHAGH 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +LL P+             LL+  +A          G+   LT RE E L  I++G+++ 
Sbjct: 126 ILLQPE---------VAGALLSQEEAQ------SGLGRGGSLTEREREVLGLIADGRSNR 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 171 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGV 211


>gi|229493950|ref|ZP_04387722.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
 gi|229319227|gb|EEN85076.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
          Length = 239

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            + + P    +    +L F    +   L + F    ++  DR+ E+   ++   +     
Sbjct: 111 TDVLRPSGYAEGASVALGFSGREVTGLLHMSFADSGVV--DRVREVVAASSAACSRVVGD 168

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            V   +   L+ RE++ L  ++ G  + EIA  L +SR TV  ++ +I  KT T +R  A
Sbjct: 169 QVALDR-VHLSPREIQVLQLVARGAGNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQA 227

Query: 237 IAYAVRNNIV 246
              A +  ++
Sbjct: 228 AVRAAKWGLI 237


>gi|221369733|ref|YP_002520829.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
 gi|221162785|gb|ACM03756.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
          Length = 212

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 8/119 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--------ANMFKSYDV 178
                 +     R RIG + +    R    + + E G + A          A    +   
Sbjct: 88  ARAGLIVPLPDQRGRIGAITMLSAQREDYPEDIAEAGRIVALAVLVRAGSLAPAVGAVSP 147

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 +L+ R++E L WI+ GK++ EIA+ILG+SR  V  +++ I++K    +R+ A+
Sbjct: 148 ALASLAQLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 206


>gi|288919634|ref|ZP_06413962.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288348923|gb|EFC83172.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 90

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 45/87 (51%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               LL+ + A +    D        LT RE+E L  +++G  + +IA  L IS NTV N
Sbjct: 1   MASKLLSEFAAMIKTKDDRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLYISENTVKN 60

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I +I+ K    +R  A+ YAVR  ++
Sbjct: 61  HIRNILEKLQLHSRMEAVVYAVREKLL 87


>gi|196231497|ref|ZP_03130355.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224350|gb|EDY18862.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 216

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 21/207 (10%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA-----LSEKDKYYNVLQ 103
           M AL +  G           F   +      S  P   V  +      +S  D      +
Sbjct: 22  MRALDQEDGFHCLG-----GFGSCEDAFAALSRQPAPQVVLLDVGLPGMSGLDGIARFRE 76

Query: 104 RPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           +  +    V     +              Y   T  V  I   +      G  +      
Sbjct: 77  QAPQARIIVLTVFEDEDKIFRAICAGAAGYLLKTAPVEEIARAIRDALAGGAPMN----- 131

Query: 161 EIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             G +A    +MF  +       D+ LT RE + L  + +G+T  EIA  L +S +TV+ 
Sbjct: 132 --GRIARRVLDMFARFAPTRGDGDYGLTTRETQILEAMVKGRTKKEIAAQLDLSFHTVDT 189

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +I +K    TR+GA+A A++  +V
Sbjct: 190 HLRNIYQKLEVNTRTGAVAKALKEKLV 216


>gi|329731507|gb|EGG67870.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 209

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
            +   +    + +   ++   +  +  E+      +D   + Y   T     I   +   
Sbjct: 60  DMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVHKT 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                +   + L ++      +  M K  +++      LT RE+E L  I++G ++ EIA
Sbjct: 120 SSGESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIA 169

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 170 SASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|71736138|ref|YP_274051.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556691|gb|AAZ35902.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 240

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L   GR I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|309790732|ref|ZP_07685281.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308227223|gb|EFO80902.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 193

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 43/101 (42%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    + +  +      +       +  +++       +LT RE E L  I++GKT+ E
Sbjct: 92  FVAAVRQALRGETFINGSMTVQLLQRLATTHESSSPPRIQLTRREQEVLQLITQGKTNRE 151

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I  +L IS  TV  ++  I+ K     R+ A   A+   ++
Sbjct: 152 IGQLLNISVGTVKIHVEHIIAKLGVSDRTQAAVRAIDLGLL 192


>gi|298249976|ref|ZP_06973780.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547980|gb|EFH81847.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 224

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +D   R++  D  +     +  L E +G   F+LV   +  ++ +  +     P  ++  
Sbjct: 4   TDKPLRILVADDHLVVRKGLRLLLEEMG-EGFVLVGEAVDGKEAI-RLTDELQPDVVLMD 61

Query: 90  MALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIG 143
           + +   D    + Q     P  +   +  T  ++     G+    C   L    A     
Sbjct: 62  IRMPGMDGLEAIEQIHWSWP-HVAVVILTTYTDDEALLRGLQAGACGYLLKETSAETLFH 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202
            +    +G  +L+  +    L   +++    S     G    ELT RE   L  ++ G+ 
Sbjct: 121 AIRTAARGEFLLQPEIMARILAQTHRSVPNSSPGAPSGNSTVELTERERAILIAVAHGER 180

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S EIA  LG+S  TV  ++ +I  K    +R+ A+A A+   ++
Sbjct: 181 SKEIAQHLGVSERTVKAHLTNIYTKLNVDSRASAVASALERGLL 224


>gi|302546480|ref|ZP_07298822.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302464098|gb|EFL27191.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 218

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D    +L   +  +  G ++L P+             LL+  +A 
Sbjct: 98  VVPALRAGAAGYVYKDVDPEALASAIRSVHAGHVVLQPE---------VADALLSQDEAG 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    G+   LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K    
Sbjct: 149 ------GGQGRGGSLTDREREVLGLIADGRSNREIARRLVLSEKTVKTHVSNILMKLDLA 202

Query: 232 TRSGAIAYAVRNNI 245
            R+ A  +AVR+ I
Sbjct: 203 DRTQAALWAVRHGI 216


>gi|108805421|ref|YP_645358.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766664|gb|ABG05546.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 232

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 10/170 (5%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPE---NITPPAGMDNRYCSLTFD 136
           P  +V  +A+   D       + +   ++   V   L +    +         Y   +  
Sbjct: 57  PDVVVMDLAMPGVDGLEATRRIKEEHPQVAVLVVTALEDPEYMLEALKAGAAGYVLKSSP 116

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           + R+   L  L      + ++       L    A            + ELT RE E L  
Sbjct: 117 LPRVISALRRLLSGESPLNQE---LAARLIQDLARRPGGGGNPPPAE-ELTAREREVLVL 172

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G+T+ EIA  L ISR T  +++ +I+RK     R+ A+A A    ++
Sbjct: 173 MARGRTNPEIARELVISRGTAKSHVQNIIRKLGVSDRTQAVARAFELGLI 222


>gi|332799645|ref|YP_004461144.1| LuxR family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697380|gb|AEE91837.1| two component transcriptional regulator, LuxR family
           [Tepidanaerobacter sp. Re1]
          Length = 215

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +  L  A  A   +        D    LT RE E L  I++G ++ EI++ LGIS  TV 
Sbjct: 128 QPNLTRALVAEYNRLTQPVSNNDVRKNLTAREKEVLADIAKGMSNREISIDLGISEKTVK 187

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N+++SI+RK     R+ A  +A++N +V
Sbjct: 188 NHVSSILRKLNLMDRTQAAVFAIKNRLV 215


>gi|297161600|gb|ADI11312.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 216

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 9/153 (5%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           E  +    L  P  +      T    + P        Y     D   +   +  +     
Sbjct: 70  EALRRLRGLDNPARVLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHV 129

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++  +    + LL+  +A          G+   LT RE E L  I++G+++ EIA  L +
Sbjct: 130 LLQPE--VALALLSQEEAG------GGQGRGGSLTEREREVLALIADGRSNREIARALIL 181

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 182 SEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 214


>gi|256394564|ref|YP_003116128.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256360790|gb|ACU74287.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 201

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E LT I+ GK++ EIA  L +S  TV  +I ++  K   + R+ A+ YA+R  
Sbjct: 140 DLTPREAEVLTLIARGKSNTEIAGELFVSAATVKTHINNLFAKIGVRDRAQAVRYALRRG 199

Query: 245 I 245
           +
Sbjct: 200 L 200


>gi|52079413|ref|YP_078204.1| putative transcriptional regulator YhcZ [Bacillus licheniformis
           ATCC 14580]
 gi|52784773|ref|YP_090602.1| YhcZ [Bacillus licheniformis ATCC 14580]
 gi|52002624|gb|AAU22566.1| putative transcriptional regulator YhcZ [Bacillus licheniformis
           ATCC 14580]
 gi|52347275|gb|AAU39909.1| YhcZ [Bacillus licheniformis ATCC 14580]
          Length = 217

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K  +LT RE + L  I++GK++ EIA  L IS  TV  ++++++ K     R+ A  +A
Sbjct: 146 EKIHQLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFA 205

Query: 241 VRNNI 245
           V++ +
Sbjct: 206 VKHGL 210


>gi|209886745|ref|YP_002290602.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans
           OM5]
 gi|209874941|gb|ACI94737.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans
           OM5]
          Length = 195

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +   + P   +D R  +L+F  AR             +  RDR   I L      + 
Sbjct: 72  FGLVEGFVIPITTLDQRIAALSFGGAR-----------DDLSNRDRSALIFLANFAIGHW 120

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                     +  L+ RE++CL W  EGKT  EI+VILGISR+TV  +I S   K     
Sbjct: 121 LYLRRPRPTCNKTLSPRELDCLLWAGEGKTDWEISVILGISRSTVTKHITSAREKLNAVN 180

Query: 233 RSGAIAYAVRNNIV 246
           +  AIA A+R  I+
Sbjct: 181 KPHAIAIAMRLKIL 194


>gi|54022382|ref|YP_116624.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54013890|dbj|BAD55260.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 220

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +A +        L     +    F                +     
Sbjct: 50  DVVLMDIRMPVLDGLAATRTIAADPALTDVRVVVLTTFELDEYVFEAMRAGATGFLVKHT 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   + ++     ++         L+  + A+  +          ELT RE E + 
Sbjct: 110 EPADLVRAVRVVAAGDALLSPGVTRR--LITEFAAHAKQPPPAALA---ELTDREREVMA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG T+ EI   L +S  T   +++ I+ K   + R+  +  A  + +V
Sbjct: 165 LVAEGLTNAEIGARLYLSPATARTHVSRILTKLGARDRTQLVVLAYESGLV 215


>gi|317125624|ref|YP_004099736.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589712|gb|ADU49009.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 237

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYDVH 179
               N Y         +  G+  +F    +I        L E   ++ ++  +  +    
Sbjct: 109 RAGANGYLLKDVPPEEVAAGIRGVFHGQSLISPMMASKLLQEFAQMSRHEGTVPAATPEL 168

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE+  L  ++ G+ + EIA  L IS NTV N+I +I+ K    +R  A  Y
Sbjct: 169 ELPR--LTERELGILRLVARGRLNREIARELFISENTVRNHIRNILDKLQMHSRMEAAMY 226

Query: 240 AVRNNIV 246
           AVR  ++
Sbjct: 227 AVRKRLI 233


>gi|296140566|ref|YP_003647809.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296028700|gb|ADG79470.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 218

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 6/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIG 143
           VR   ++       +L+R   +   +  T   +      +                +   
Sbjct: 56  VRMPEMNGLQAAEEILRRHDGVRVLMLTTFDIDDYVYEALRVGASGFMLKDAPAEELVRA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +        +  +      G    LT RE E L  ++ G+++
Sbjct: 116 VRVVHEGQSLLAPSVTRRMIAEVTAARSRRRPAPAELGT---LTPREREVLEAVAAGRSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  +++ +++K   + R+ A+ YA    +V
Sbjct: 173 AEIAETLFVSEQTVKTHVSKVLQKLGLRDRAQAVVYAYETGVV 215


>gi|186682728|ref|YP_001865924.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465180|gb|ACC80981.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 221

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 84/215 (39%), Gaps = 11/215 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ +++ +D        + AL E + +   ++   +  ++    ++V+   P  ++  + 
Sbjct: 1   MMIKVLLVDDQGLIRQGLRALLE-LESDLEIVGEAENGEQAI--NLVAEFQPDVVLLDIR 57

Query: 92  LSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLM 145
           +   D       + +R ++    V  T  ++    A + N    Y         + + + 
Sbjct: 58  MPIMDGVAATKEIQKRFSKTKILVLTTFDDDEYVSAALQNGAMGYLLKDTPSEELAVAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            ++     +    + +  LL  +                ELT RE E L  I+ G ++ E
Sbjct: 118 AVYKGYTQLGPGIVKK--LLTQFSNGTPIHSTPVPSTLNELTPREKEVLRLIATGASNRE 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           IA  L IS  TV N++ +I+     + R+ A  +A
Sbjct: 176 IAQELYISEGTVKNHVTNILNTLNLRDRTQAAIWA 210


>gi|182439488|ref|YP_001827207.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326780152|ref|ZP_08239417.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178468004|dbj|BAG22524.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660485|gb|EGE45331.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 214

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 16/169 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D     L+R  EL  P        F      +       + Y     
Sbjct: 52  PDVVLMDIKMPGTDG-IEALRRLRELDNPAKVLIVTSFTEQRTVVPALRAGASGYVYKDV 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++  +      LLA   A          G+   LT RE E L 
Sbjct: 111 DPDALAGAIRSVHAGHVLLQPE--VAGALLAQDDA------GTGTGRGSTLTEREREVLG 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            I++G+++ EIA    +S  TV  ++++I+ K     R+ A  +AVRN 
Sbjct: 163 LIADGRSNREIARAFVLSEKTVKTHVSNILMKLDVADRTQAALWAVRNG 211


>gi|148654644|ref|YP_001274849.1| response regulator receiver protein [Roseiflexus sp. RS-1]
 gi|148566754|gb|ABQ88899.1| response regulator receiver protein [Roseiflexus sp. RS-1]
          Length = 471

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  ++ G T+ +IA  L IS NTV  ++ +I  K    +R+ A  YAVRN 
Sbjct: 8   QLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAVRNG 67

Query: 245 IV 246
           ++
Sbjct: 68  LL 69


>gi|260461224|ref|ZP_05809472.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319785401|ref|YP_004144877.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032761|gb|EEW34024.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317171289|gb|ADV14827.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 248

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++++ RE EC+ WIS+GKTS EI  ILG S+NTV+ ++ ++MRK  T  R+   A AV  
Sbjct: 184 YKISDRERECIHWISKGKTSGEIGTILGRSQNTVDFHVKNVMRKLDTTRRTALAAKAVEL 243

Query: 244 NIV 246
            I+
Sbjct: 244 GII 246


>gi|225851721|ref|YP_002731954.1| transcriptional activator protein solR [Brucella melitensis ATCC
           23457]
 gi|265999658|ref|ZP_06111771.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9]
 gi|225640086|gb|ACN99999.1| Transcriptional activator protein solR [Brucella melitensis ATCC
           23457]
 gi|263095176|gb|EEZ18845.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9]
          Length = 238

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ ++      +M++  DV       
Sbjct: 115 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 174

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234

Query: 243 NNIV 246
             ++
Sbjct: 235 FGLL 238


>gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-3-3Ab]
          Length = 210

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 71/198 (35%), Gaps = 18/198 (9%)

Query: 54  EYVGASHFLLVRWDLFQEQKLD------SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           +Y+    + +V      E           ++  D     +      +  +  +       
Sbjct: 22  DYLEFRGYEVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDGYTFVQTIRSNSATDWIPV 81

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +F        + +       + Y    F+   +   +  +      +L+           
Sbjct: 82  IFLSARGQTADRVRGLNTGADVYLVKPFEPEELVAQVESVLKHTERLLQ----------- 130

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              N      +   ++ ELT  E + + +++ G ++ EIA ++G+S+ TV +++++++ K
Sbjct: 131 -MQNAVIQPVIKLDREIELTPTEAKVIQYVARGMSNREIAEVMGVSQRTVESHVSNMLSK 189

Query: 228 TATKTRSGAIAYAVRNNI 245
           T    R+    +A+ + +
Sbjct: 190 TGLHNRTELARWALESGL 207


>gi|282866538|ref|ZP_06275581.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282558585|gb|EFB64144.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 220

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R  +  IG  AA           H G   EL+GREVE L  ++EG+++  I V +G+S  
Sbjct: 129 RPGMAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +++A I RK  T  R+G +A A+R  I+
Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|56964850|ref|YP_176581.1| two-component response regulator of extracellular degradative
           enzyme [Bacillus clausii KSM-K16]
 gi|56911093|dbj|BAD65620.1| two-component response regulator of extracellular degradative
           enzyme [Bacillus clausii KSM-K16]
          Length = 235

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 1/136 (0%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170
           V H L    +     +    SL   V  +  G   + PK    ++++          YQ 
Sbjct: 97  VSHVLRTGASGYLLKEMDAESLVEAVKVVASGGAYIHPKVTSNLIKEYRRLARQDEQYQD 156

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++      +      LT RE E L  +++G+ +  I   L IS  TV N++++I++K   
Sbjct: 157 SIGFREVEYRKPLHILTRRECEVLQLMTDGQNNRAIGESLYISEKTVKNHVSNILQKMNV 216

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+  +++   V
Sbjct: 217 NDRTQAVVESIKKGYV 232


>gi|328882352|emb|CCA55591.1| hypothetical protein SVEN_2305 [Streptomyces venezuelae ATCC 10712]
          Length = 598

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + AR+ +G      +    + D      LL                    LT RE E L 
Sbjct: 497 EGARLELGAARAAFERLGAVPDARRAAALLTGGSRRRLPG---------GLTAREAEVLR 547

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG T+ +IA  L IS +TV  ++ +I  K    +R+ A AYA  + +V
Sbjct: 548 LVAEGGTNKDIARTLVISEHTVARHLNNIFAKLGVGSRASATAYAYAHGLV 598


>gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 231

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 72/184 (39%), Gaps = 19/184 (10%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLP----ENITPPAGMDNRYC 131
            + P  ++  + + E D Y  +      +  E    VF T      + I       + Y 
Sbjct: 47  KNPPDLVISDIMMPEVDGYQFLKKLRENQRYETIPVVFLTARGMTSDRIQGYNAGCDAYI 106

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-------- 183
           S  FD   +   +  L  + ++  +    ++  LA    ++ +  +     +        
Sbjct: 107 SKPFDPEELEAIVKNLLERRKVNSQGN-ADVAQLAEIAQDIREIKEKLGHTENLTTTPPP 165

Query: 184 --FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              ELT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+
Sbjct: 166 IKIELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRTELVRFAL 225

Query: 242 RNNI 245
           ++ +
Sbjct: 226 KHGL 229


>gi|260756046|ref|ZP_05868394.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           6 str. 870]
 gi|260676154|gb|EEX62975.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           6 str. 870]
          Length = 238

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ ++      +M++  DV       
Sbjct: 115 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 174

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234

Query: 243 NNIV 246
             ++
Sbjct: 235 FGLL 238


>gi|172037280|ref|YP_001803781.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698734|gb|ACB51715.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 247

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 14/171 (8%)

Query: 83  PFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTL-PENITPPAGMDNRYCSLTFD 136
           P  +V  + L   D           +    +     HTL  E +   +   + YC     
Sbjct: 84  PDLVVMDIGLPRLDGIAATKQIKEQEPNIHVVMLTSHTLQTEVVAALSSGADAYCIKGAS 143

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLT 195
           + R       L            +    +A    +  KS +    ++  L + RE+E L 
Sbjct: 144 LER-------LLAAIEAAQDGATYLDPQIARLVLDNLKSPNPEPNQNIALLSERELEVLK 196

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ +V
Sbjct: 197 LIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 247


>gi|23501101|ref|NP_697228.1| LuxR family transcriptional regulator [Brucella suis 1330]
 gi|62289164|ref|YP_220957.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82699104|ref|YP_413678.1| transcriptional regulator LuxR family protein [Brucella melitensis
           biovar Abortus 2308]
 gi|163842459|ref|YP_001626863.1| transcriptional activator protein solR [Brucella suis ATCC 23445]
 gi|254694980|ref|ZP_05156808.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|254696612|ref|ZP_05158440.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254700994|ref|ZP_05162822.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 5
           str. 513]
 gi|254705366|ref|ZP_05167194.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 3
           str. 686]
 gi|254707120|ref|ZP_05168948.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis M163/99/10]
 gi|254709336|ref|ZP_05171147.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis B2/94]
 gi|254713241|ref|ZP_05175052.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M644/93/1]
 gi|254716405|ref|ZP_05178216.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M13/05/1]
 gi|254731525|ref|ZP_05190103.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|256030859|ref|ZP_05444473.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis M292/94/1]
 gi|256045980|ref|ZP_05448852.1| Transcriptional activator, LUXR family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256060329|ref|ZP_05450502.1| Transcriptional activator, LUXR family protein [Brucella neotomae
           5K33]
 gi|256112692|ref|ZP_05453613.1| Transcriptional activator, LUXR family protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|256158890|ref|ZP_05456740.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M490/95/1]
 gi|256254264|ref|ZP_05459800.1| Transcriptional activator, LUXR family protein [Brucella ceti
           B1/94]
 gi|256258748|ref|ZP_05464284.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|260169762|ref|ZP_05756573.1| Transcriptional activator, LUXR family protein [Brucella sp. F5/99]
 gi|23346971|gb|AAN29143.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella suis 1330]
 gi|62195296|gb|AAX73596.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella abortus bv. 1 str. 9-941]
 gi|82615205|emb|CAJ10146.1| Bacterial regulatory protein, LuxR family:Autoinducer binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|163673182|gb|ABY37293.1| Transcriptional activator protein solR [Brucella suis ATCC 23445]
          Length = 235

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ ++      +M++  DV       
Sbjct: 112 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 171

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 231

Query: 243 NNIV 246
             ++
Sbjct: 232 FGLL 235


>gi|293364822|ref|ZP_06611539.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703071|ref|ZP_07640018.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291316272|gb|EFE56708.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623464|gb|EFO02454.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 210

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGK 201
           ++       ++   R    G LA  Q    K   +  H     ELT RE + L  I++G 
Sbjct: 101 MLKTSSADELLHALRKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIAKGY 160

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 161 ENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|254389093|ref|ZP_05004323.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702810|gb|EDY48622.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 207

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 2/147 (1%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             +  P  L    F              + +       A +   + ++     ++     
Sbjct: 58  EGVSGPRVLMLTTFDVDDYVYEALRSGASGFLLKDAPPADLIAAVRVVAAGEALLAPSVT 117

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               L+A + A           +  ELT RE E L  I++G ++ EIA  L ++  TV  
Sbjct: 118 RR--LIADFAARHPAPRKGTGHRPKELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKT 175

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I  I+ K   + R+ A+ +A  + +V
Sbjct: 176 HIGRILAKLRLRDRAQAVIFAYESGLV 202


>gi|319646806|ref|ZP_08001035.1| YhcZ protein [Bacillus sp. BT1B_CT2]
 gi|317391394|gb|EFV72192.1| YhcZ protein [Bacillus sp. BT1B_CT2]
          Length = 216

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 39/65 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K  +LT RE + L  I++GK++ EIA  L IS  TV  ++++++ K     R+ A  +A
Sbjct: 146 EKIHQLTNREKDVLLEITKGKSNKEIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFA 205

Query: 241 VRNNI 245
           V++ +
Sbjct: 206 VKHGL 210


>gi|327441352|dbj|BAK17717.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 224

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L          +     +   +  +  G   L PK   + ++ + E   L+ ++  
Sbjct: 90  VTHALKSGALGYMLKEMDADEIVEAIKVVSNGGSYLHPK---VTKNLVAEFRRLSEHENK 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++G+++  I   L IS  TV N+++SI++K    
Sbjct: 147 GNFHQTEIRRPFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVN 206

Query: 232 TRSGAIAYAVRNN 244
            R+ A+  A++N 
Sbjct: 207 DRTQAVVTAIKNG 219


>gi|309799719|ref|ZP_07693936.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308116675|gb|EFO54134.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 210

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
            R  ++       ++   R   +G LA  Q    K   +  H     +LT RE + L  I
Sbjct: 97  ARGYMLKTSSADELLHAVRKVAVGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLI 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 157 AKGYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205


>gi|42781357|ref|NP_978604.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC
           10987]
 gi|42737279|gb|AAS41212.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC
           10987]
          Length = 211

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 78/215 (36%), Gaps = 10/215 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+     +   + + ++     E VG +          Q ++ D +V  D     +  + 
Sbjct: 7   LVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVQTKRPD-VVLMDLSMPKMDGIE 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +++ K Y+   +   L    F      +       + Y        ++   ++ +    
Sbjct: 66  ATKRIKQYDETIKI--LILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAVHEGN 123

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                       LL        K           LT RE E L  I++G+++ EIA +L 
Sbjct: 124 TNFHPK--VTPALLGRSVVKKEKENPFSM-----LTKREQEVLREIAQGRSNKEIAAVLH 176

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+  TV  ++++++ K     R+ A  YAV+  ++
Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYGVI 211


>gi|313606801|gb|EFR83477.1| transcriptional regulatory protein DegU [Listeria monocytogenes FSL
           F2-208]
          Length = 127

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++ 
Sbjct: 64  LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 122


>gi|163848961|ref|YP_001637005.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526915|ref|YP_002571386.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163670250|gb|ABY36616.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450794|gb|ACM55060.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 209

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           +R  +    +LA                D  LT RE E L  ++EG T+ EIA  L +S 
Sbjct: 118 IRGAMAGKAVLAPALMQRILEAQTSKAADT-LTEREREVLKLVAEGLTNAEIASRLTVSE 176

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  ++ASI+RK     R+ A  YA+R+ +V
Sbjct: 177 ETVKTHVASILRKLGLAHRTQAAIYALRHGLV 208


>gi|118477693|ref|YP_894844.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416918|gb|ABK85337.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 221

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 161 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 219


>gi|254390047|ref|ZP_05005268.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197703755|gb|EDY49567.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 723

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 5/156 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++  ++    L     L    F      +       + +         +   L  +   
Sbjct: 565 GVAATERLTAELPGCRVLALSTFDMDEHVVRALRAGASGFLPKDVSPEELTAALRTVSAG 624

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++    L    L+  + A    + +V       LT RE E L  I+ G  +  IA  L
Sbjct: 625 DAVVAPRLLTR--LIGTFVAPQRTTEEVRLD---GLTPRETEVLRLIATGLDNTGIAEEL 679

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GI   TV N+I S+  K   + R+ A+  A  + +V
Sbjct: 680 GIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLV 715


>gi|269837395|ref|YP_003319623.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786658|gb|ACZ38801.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 249

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIG--LMLLFPKGRIILRDR-LWEIGLLAAYQ 169
           F  +    +     D     L   + R+  G  L+ L    R  L  R L E   L    
Sbjct: 100 FEAVRAGASAFLTKDIEAQELISSLDRVVQGEQLINLEVMSRPELAWRVLSEFRQLTGDD 159

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                + D    K   L+ REVE L  +++G ++ EIA  L I+  TV N++ S++RK  
Sbjct: 160 GEAGPASDP---KRLPLSVREVEVLDCVAQGLSNKEIAEALFITEQTVKNHMTSVLRKLQ 216

Query: 230 TKTRSGAIAYAVRNN 244
              R  A+  AVRN 
Sbjct: 217 VNDRVQAVLCAVRNG 231


>gi|297160873|gb|ADI10585.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V  RP  L    F              + +       A +   + ++     ++      
Sbjct: 77  VTHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRIVAAGEALLAPSVTR 136

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              L+A +             +   LT RE E L  I+ G ++ EIA  L ++  TV  +
Sbjct: 137 R--LIADFARQRPAPRKNFAARRSGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTH 194

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           I  ++ K   + R+ A+ +A  + +V
Sbjct: 195 IGRVLAKLGLRDRAQAVIFAYESGLV 220


>gi|297199099|ref|ZP_06916496.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297147291|gb|EDY59218.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 224

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R  +G  +  P    ++   L E   LA+ 
Sbjct: 91  HADVLEAVKSGATGYLLKSASTEELLDAVRRTAVGDPVFTPGLAGLV---LGEYRRLASD 147

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    + D    +  ELT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 148 PA---PASDPDRPRAPELTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 204

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 205 QLHNRVELVRYAIERGL 221


>gi|163801312|ref|ZP_02195211.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
 gi|159174801|gb|EDP59601.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
          Length = 217

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECL 194
           D+  +  GL  +      + RD L     L AY AN+  +  ++    + ELT RE + L
Sbjct: 110 DLDNVLRGLKGVLNGKNWLSRDVLNR---LVAYLANLNHTVTELDTQLEIELTRRETQVL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T + +G ++ +IA  L +S +TV +++ SI RK   K R  AIA+A RN 
Sbjct: 167 TALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAIAWAKRNR 216


>gi|327480105|gb|AEA83415.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri
           DSM 4166]
          Length = 222

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRI 142
           ++  +   E  +         ++       L E+     G +     Y +      ++  
Sbjct: 63  MMPGLDGFETCRRIKAQPMLEDVPVLFMTALTESEHVLEGFEAGGIDYVTKPIHTEQVLA 122

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +       R +   R          +    K       + F+LTGREVE L W+S GKT
Sbjct: 123 RVAAHLRTARALQNARRNATQAPPVDE----KQIQAMLSQRFQLTGREVEVLHWVSCGKT 178

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + +I  ILG+S  TVN ++  +  K   +TR+
Sbjct: 179 NRDIGDILGLSPRTVNKHLEHVYVKLGVETRT 210


>gi|302523631|ref|ZP_07275973.1| response regulator receiver [Streptomyces sp. AA4]
 gi|302432526|gb|EFL04342.1| response regulator receiver [Streptomyces sp. AA4]
          Length = 224

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D +   L   V  +  G  LL P              L+  +   
Sbjct: 95  VFSALRAGASGFLLKDAQPAELVNAVRTVARGEALLAPT---------VTRALIGQFADR 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +  +     G    LT RE E L  ++ G ++ EIA  L +S  TV  Y++ I+ K   +
Sbjct: 146 IRPASAAGPGPLEHLTPREREVLVQLARGLSNAEIAEELVLSIETVKTYVSRILAKLDLR 205

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A R  +V
Sbjct: 206 DRVQAVVLAYRTGLV 220


>gi|297202869|ref|ZP_06920266.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197715208|gb|EDY59242.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 230

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L          D     +   V  +  G   L P  +  L +RL          ++ 
Sbjct: 99  FPALKAGARGYLTKDAGGDEIVRAVQSVLSGDAGLSPSIQRRLLERL----------SDP 148

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT REVE L  I+EG T+ EIA  L +S  TV  +I ++  KT  K 
Sbjct: 149 EPPQPAPAEAPDGLTAREVEVLALIAEGLTNQEIARELHVSTATVKTHINNLFAKTGIKD 208

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA    +V
Sbjct: 209 RAQAVRYAYAKGLV 222


>gi|221065714|ref|ZP_03541819.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220710737|gb|EED66105.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 254

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +Q ++ +   + +     LT RE E L  I++GK + EI   L IS  TV+ ++ +I RK
Sbjct: 176 FQTSITEENPLEYKNYEPLTEREKEVLRLIAQGKRTHEIGSYLKISTLTVSTHVKNIYRK 235

Query: 228 TATKTRSGAIAYAVRNNIV 246
              +TR+ A+ YAV   I+
Sbjct: 236 MQVRTRAQAVRYAVLKGII 254


>gi|220935339|ref|YP_002514238.1| two component transcriptional regulator, LuxR family
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996649|gb|ACL73251.1| two component transcriptional regulator, LuxR family
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 227

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 79/221 (35%), Gaps = 16/221 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D    +   +  L +  G      V      E  +D +     P  ++  M 
Sbjct: 1   MTRRVLLIDDHTLFREGLQELLKRHGIDT---VGAVGDGETGID-LARDLLPDVILLDMR 56

Query: 92  LSEKDKYYNVLQRPTE--LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   +    VL+R  +  L  P+          + +         Y     +   +   L
Sbjct: 57  MPAMNG-LEVLRRLRQAGLKMPIVMLTTSTEEQDLVECLRNGAQGYLLKEMEPGDLVDAL 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++  D    +  L         S         ELT RE E L  ++EG+++ 
Sbjct: 116 EEILQGKTVVAPD----LAQLLVRVVQGKSSSANEPSPFDELTPREGEILALLAEGQSNK 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  LGIS  TV  ++ +I+RK    +R  A   AV+  +
Sbjct: 172 VIARNLGISDGTVKLHVKAILRKLGVHSRVEAAVLAVQQGL 212


>gi|192290718|ref|YP_001991323.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192284467|gb|ACF00848.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 240

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 13/203 (6%)

Query: 57  GASHFLLVRWDL---FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           G SH +           ++++ ++V   WP    R             ++R T    P  
Sbjct: 37  GFSHVIAGVIPTPGTSAKEQIANVVLHQWPDVWSRRYFSKGYIFTDPAIRRVTSSMVPFS 96

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF--PKGRIILRDRLWEI--------G 163
            T   +   PAG      +  F +       M+        + +   + E+         
Sbjct: 97  WTELWDHDSPAGHRILGEAAEFGLKEGFTVPMVTLDGHSAGLSIAGAMTELPPHLRGPVQ 156

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++A Y                 LT RE + L WI+EGKT  EIA IL +S + V+     
Sbjct: 157 MMAIYSFARAAHLRERPPAPVTLTIREADVLHWIAEGKTDWEIARILQVSEHLVDKVARQ 216

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K     R  A+  A+R  ++
Sbjct: 217 IKSKFQVVNRVQAVVQAMRAGVI 239


>gi|311899082|dbj|BAJ31490.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 215

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           L          D    +L   +  +  G +LL P+             L AA  A    +
Sbjct: 100 LRAGAAGYVYKDVDPEALAGAIRSVHAGHVLLQPE-------------LAAALLAEDVPA 146

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                G +  LT RE E L+ I++G+++ EIA  L +S  TV  ++++I+ K     R+ 
Sbjct: 147 PPQGRGGN--LTEREREVLSHIADGRSNREIARTLHLSEKTVKTHVSNILMKLDVADRTQ 204

Query: 236 AIAYAVRN 243
           A  +AVRN
Sbjct: 205 AALWAVRN 212


>gi|256368654|ref|YP_003106160.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella microti CCM 4915]
 gi|255998812|gb|ACU47211.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella microti CCM 4915]
          Length = 235

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ ++      +M++  DV       
Sbjct: 112 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 171

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 231

Query: 243 NNIV 246
             ++
Sbjct: 232 FGLL 235


>gi|126649458|ref|ZP_01721699.1| YhcZ [Bacillus sp. B14905]
 gi|169825964|ref|YP_001696122.1| two-component response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|126593783|gb|EAZ87706.1| YhcZ [Bacillus sp. B14905]
 gi|168990452|gb|ACA37992.1| two-component response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
          Length = 215

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 13/176 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNR--- 129
           S+  S  P  ++  + + E D       +  +  ++   +  +  +       M+     
Sbjct: 41  SLAESIQPDIILMDLVMPELDGIQATKRIKAKFPKIEILMLTSFSDRDHVVPAMEAGAAG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     +   + + +  +      +  +    + +      N   S +        LT R
Sbjct: 101 YQLKDIEPDELVLSIRRIMRGENTLHPEATTTLEMDRQEAQNAPHSLN-------PLTPR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + L  +++GK++ EIA  L ++  TV  +I++I  K   + R+ A  YAV++ +
Sbjct: 154 EQDVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209


>gi|296132074|ref|YP_003639321.1| transcriptional regulator, LuxR family [Thermincola sp. JR]
 gi|296030652|gb|ADG81420.1| transcriptional regulator, LuxR family [Thermincola potens JR]
          Length = 232

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 42/82 (51%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+      +  S  V   K+  LT RE E L  +++G T+ +IA  L IS NTV N++ 
Sbjct: 129 SLIPDMMNRLSASLQVKPEKEILLTPREQEILELLAQGYTNGQIAKKLIISVNTVKNHVH 188

Query: 223 SIMRKTATKTRSGAIAYAVRNN 244
           +I+ K     R+  ++YA+   
Sbjct: 189 NILEKLGVSNRAKLVSYAMSRG 210


>gi|15924874|ref|NP_372408.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927458|ref|NP_374991.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283553|ref|NP_646641.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49484125|ref|YP_041349.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486702|ref|YP_043923.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|148268356|ref|YP_001247299.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394418|ref|YP_001317093.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980200|ref|YP_001442459.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253314946|ref|ZP_04838159.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253729642|ref|ZP_04863807.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|255006672|ref|ZP_05145273.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257426016|ref|ZP_05602438.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428689|ref|ZP_05605084.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431299|ref|ZP_05607675.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434017|ref|ZP_05610368.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436921|ref|ZP_05612963.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793762|ref|ZP_05642741.1| two-component system response regulator [Staphylococcus aureus
           A9781]
 gi|258408904|ref|ZP_05681186.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|258420992|ref|ZP_05683923.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|258422961|ref|ZP_05685860.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|258430036|ref|ZP_05688406.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|258443446|ref|ZP_05691788.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|258445304|ref|ZP_05693495.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258447868|ref|ZP_05696002.1| response regulator protein vraR [Staphylococcus aureus A6224]
 gi|258453301|ref|ZP_05701286.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269203536|ref|YP_003282805.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894549|ref|ZP_06302777.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8117]
 gi|282904515|ref|ZP_06312400.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906287|ref|ZP_06314139.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909203|ref|ZP_06317019.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911509|ref|ZP_06319309.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914681|ref|ZP_06322466.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282917229|ref|ZP_06324984.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282919718|ref|ZP_06327450.1| two component transcriptional regulator VraR [Staphylococcus aureus
           subsp. aureus C427]
 gi|282925122|ref|ZP_06332782.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282928056|ref|ZP_06335663.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A10102]
 gi|283771033|ref|ZP_06343924.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus H19]
 gi|283958645|ref|ZP_06376091.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293507758|ref|ZP_06667600.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510776|ref|ZP_06669478.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus M809]
 gi|293539315|ref|ZP_06671994.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407262|ref|ZP_06817061.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8819]
 gi|295428465|ref|ZP_06821092.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275883|ref|ZP_06858390.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297208909|ref|ZP_06925314.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297246211|ref|ZP_06930062.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8796]
 gi|297590064|ref|ZP_06948704.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300913033|ref|ZP_07130471.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|81696298|sp|Q6G850|VRAR_STAAS RecName: Full=Response regulator protein vraR
 gi|81696461|sp|Q6GFH3|VRAR_STAAR RecName: Full=Response regulator protein vraR
 gi|81704309|sp|Q7A0I0|VRAR_STAAW RecName: Full=Response regulator protein vraR
 gi|81704831|sp|Q7A2Q1|VRAR_STAAM RecName: Full=Response regulator protein vraR
 gi|81705432|sp|Q7A4R9|VRAR_STAAN RecName: Full=Response regulator protein vraR
 gi|90116383|sp|P0C0Z1|VRAR_STAA1 RecName: Full=Response regulator protein vraR
 gi|9501772|dbj|BAB03325.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|13701677|dbj|BAB42970.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus N315]
 gi|14247656|dbj|BAB58046.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|16151628|dbj|BAB69827.1| response regulator [Staphylococcus aureus]
 gi|21204994|dbj|BAB95689.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49242254|emb|CAG40961.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49245145|emb|CAG43611.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147741425|gb|ABQ49723.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946870|gb|ABR52806.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722335|dbj|BAF78752.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253726638|gb|EES95367.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|257271159|gb|EEV03316.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274333|gb|EEV05845.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277948|gb|EEV08604.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280943|gb|EEV11087.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283710|gb|EEV13835.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787734|gb|EEV26074.1| two-component system response regulator [Staphylococcus aureus
           A9781]
 gi|257840351|gb|EEV64813.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|257842940|gb|EEV67358.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|257846748|gb|EEV70763.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|257849630|gb|EEV73598.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|257851331|gb|EEV75271.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|257855822|gb|EEV78746.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257858800|gb|EEV81669.1| response regulator protein vraR [Staphylococcus aureus A6224]
 gi|257864509|gb|EEV87252.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262075826|gb|ACY11799.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282313080|gb|EFB43478.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316356|gb|EFB46733.1| two component transcriptional regulator VraR [Staphylococcus aureus
           subsp. aureus C427]
 gi|282318856|gb|EFB49211.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282321395|gb|EFB51721.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324518|gb|EFB54830.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326771|gb|EFB57068.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330484|gb|EFB60001.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590120|gb|EFB95201.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A10102]
 gi|282595071|gb|EFC00038.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763036|gb|EFC03168.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8117]
 gi|283459627|gb|EFC06718.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus H19]
 gi|283471154|emb|CAQ50365.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283789685|gb|EFC28507.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817564|gb|ADC38051.1| Two component transcriptional regulator VraR, LuxR family
           [Staphylococcus aureus 04-02981]
 gi|290919850|gb|EFD96919.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094821|gb|EFE25089.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466407|gb|EFF08931.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus M809]
 gi|294967837|gb|EFG43867.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8819]
 gi|295127447|gb|EFG57086.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886470|gb|EFH25398.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297176918|gb|EFH36175.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8796]
 gi|297577192|gb|EFH95906.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300885811|gb|EFK81018.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302333549|gb|ADL23742.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312437651|gb|ADQ76722.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312830256|emb|CBX35098.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129309|gb|EFT85303.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS03]
 gi|315193411|gb|EFU23808.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS00]
 gi|329724817|gb|EGG61321.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 209

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
            +   +    + +   ++   +  +  E+      +D   + Y   T     I   +   
Sbjct: 60  DMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKT 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                +   + L ++      +  M K  +++      LT RE+E L  I++G ++ EIA
Sbjct: 120 SRGESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIA 169

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 170 SASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|226312803|ref|YP_002772697.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095751|dbj|BAH44193.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 228

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 4/130 (3%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +         Y     D     + L+    +G  +         L  A Q          
Sbjct: 99  VEGIRAGAVGYMLKDADSQE-MLDLIRRAHQGEALFHTVTAAKALAEALQGQRETPDSTT 157

Query: 180 WGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             +     ELT RE++ L  I++G  +D+IA  L IS  TV  ++  I++K   + R+ A
Sbjct: 158 TSQSVLLDELTDRELDVLQQIADGYRNDQIAQNLFISEGTVKTHVHRILQKMGVEDRTQA 217

Query: 237 IAYAVRNNIV 246
           +A A+R+ IV
Sbjct: 218 VAKALRHKIV 227


>gi|260551305|ref|ZP_05825506.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624]
 gi|260405619|gb|EEW99110.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624]
          Length = 238

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 80/237 (33%), Gaps = 24/237 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            DLL+  + +         + +    +G  +  + +       E K  +I+ +++P    
Sbjct: 6   EDLLSAFLVVKNEDELFEVVKSTASKLGFDYCAYGMQSPLSIAEPK--TIMLNNYPQAWQ 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           +        K    +Q       P         T  E                   +R  
Sbjct: 64  KRYIEQRYVKVDPTVQHCMVSLQPLVWSSQNAKTQEEKDFWEEARSYGLNVGWAQSSRDF 123

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAY-----QANMFKSYDVHWGKDFE-------LTGR 189
           IG   +    R    D+L E    A Y           S       D E       LT R
Sbjct: 124 IGTRGMLTLAR--STDQLSEKEQKAQYTNMYWLTQTLHSSIAKIVNDVEFSQFNLYLTNR 181

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W +EGKTS EIA I+G++  TVN ++ + M+K     +  A   AV   ++
Sbjct: 182 EKEALRWTAEGKTSAEIAQIIGVTERTVNFHLCNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|162148611|ref|YP_001603072.1| LuxR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787188|emb|CAP56781.1| putative transcriptional regulator, luxR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 239

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 141 RIGLMLLFPKGRIILRDR-LWEIGLL-AAYQANMFKSYDVHWGKDFE-LTGREVECLTWI 197
           R   +  F   + +  DR L  +G + + Y   + K  +          + RE ECL W+
Sbjct: 129 RAAFVTSFAFTKAVSEDRDLVALGFINSQYYETLSKLSEAELPGPVPTFSRREKECLLWV 188

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S GKT+ +I+VILGIS NT+N Y+ +++ K     R  A+  A+  N++
Sbjct: 189 SRGKTTWDISVILGISENTINAYLKNVILKLGCSGRIQAVLRAIDLNLI 237


>gi|315612573|ref|ZP_07887486.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315315554|gb|EFU63593.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 210

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       ELT RE + L  
Sbjct: 107 ADELLHAVRKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|257484466|ref|ZP_05638507.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331013268|gb|EGH93324.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 240

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L   GR I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|115360652|ref|YP_777789.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285980|gb|ABI91455.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 237

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 20/220 (9%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
             +L  +           ++ +  + +G  +        +   +   +V S++P    R 
Sbjct: 6   EQILYEIEATHSEHEAFGKIASAVKEIGFEYSAYCLQTPWPLSRRKVLVFSNFPEPWQRR 65

Query: 90  MALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRY-----------CS 132
              +       +L+R  + + PV      F   P+          RY            S
Sbjct: 66  YHDARYIDVDPLLRRGRQSYAPVIWSDAVFEGTPQLWEEAQAHGLRYGYSLAAVSNCGVS 125

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
               +AR    L +   + + +    L     LA  +A + K   +    D ELT REVE
Sbjct: 126 GMMSMARSHTPLTVRELQQQELKMRWLVNAAHLAITRAVLPK---LSPEGDIELTDREVE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            L W+++GKT+ EI++I+ IS  TVN ++ + + K  T  
Sbjct: 183 VLKWVADGKTAAEISMIMLISVYTVNFHVKNAVTKLNTSN 222


>gi|307710534|ref|ZP_07646970.1| response regulator [Streptococcus mitis SK564]
 gi|307618687|gb|EFN97827.1| response regulator [Streptococcus mitis SK564]
          Length = 210

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPESKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       +LT RE + L  
Sbjct: 107 AGELLHAVRKVAAGELAIEQ----EVSKKVEYHRNHIELHE-------DLTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|288554158|ref|YP_003426093.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288545318|gb|ADC49201.1| two-component response regulator of extracellular degradative
           enzyme [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---- 167
           V H L    +     +    +L   V  +  G   + PK   +  + + E   LA     
Sbjct: 95  VTHVLKTGASGYLLKEMDAGALIEAVKVVASGGSYIHPK---VTHNLIKEYRRLATEDDK 151

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           Y+ ++      +      LT RE E L  +++G+++  I   L IS  TV N++++I++K
Sbjct: 152 YEESIGFREVEYRKPLHILTRRECEVLQLMTDGQSNRAIGESLYISEKTVKNHVSNILQK 211

Query: 228 TATKTRSGAIAYAVRNNIV 246
            +   R+ A+  A++   V
Sbjct: 212 MSVNDRTQAVVEAIKKGYV 230


>gi|297203696|ref|ZP_06921093.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197711744|gb|EDY55778.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 5/174 (2%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-----GMDNRYCS 132
           V    P  L+  + +   D      +      C V      ++            + +  
Sbjct: 44  VCRHTPDVLLLDIRMPVMDGLEAARRVCARSSCKVVMLTTFDLDEYVYDALYAGASGFLL 103

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   + ++     ++       +      +     +      +   LT REVE
Sbjct: 104 KDVRRDDLVHAVRVVAGGDSLLAPTITRRLVADIVRRRREEAATGATPDRLDALTAREVE 163

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G ++ EIA  L +S +TV  ++++++ K   + R  A+  A    +V
Sbjct: 164 ILRMLARGLSNAEIATTLFVSEHTVKTHVSNVLSKLGLRDRVQAVICAYETGLV 217


>gi|269837258|ref|YP_003319486.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786521|gb|ACZ38664.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 549

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 133 LTFDVARIRIGLMLLFPK------GRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDF 184
             ++ AR R+ + L   +       RI L    W    L  A   A +      H     
Sbjct: 423 APYEGARTRVLIALACRELGDEETARIELDAARWSFSQLGAAPDVARVEALSRTHPTAPT 482

Query: 185 E-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT REVE L  ++EGKT+  IA  L IS  TV  +I++I  K    +R+ A AYA  +
Sbjct: 483 AGLTAREVEVLRLVAEGKTNRAIAEDLFISEKTVARHISNIFTKLDLSSRAAATAYAYEH 542

Query: 244 NIV 246
            IV
Sbjct: 543 GIV 545


>gi|330876121|gb|EGH10270.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 240

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                +  L    R I  ++ + +  L     ++ +           LT RE+E L W  
Sbjct: 135 ESVTSVCTLSEVERTISAEQKYLVSSLMPVLHSVARGLKFSSR---GLTLRELEVLQWAR 191

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|295839668|ref|ZP_06826601.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|197698511|gb|EDY45444.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 239

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 16/160 (10%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +R +     +    ++   TE    V   L          D    +L   +  +  G 
Sbjct: 93  EALRTLRSLGNEARVLIVTSFTEQRT-VVPALRAGAAGYVYKDIDPEALAGAIRSVHAGH 151

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +LL P+             LLA  +     S      +   LT RE E L  I++G+++ 
Sbjct: 152 VLLQPE---------VARTLLAQEEQAPQPS------RGGSLTEREREVLGLIADGRSNR 196

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 197 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 236


>gi|17988041|ref|NP_540675.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1
           str. 16M]
 gi|161618178|ref|YP_001592065.1| transcriptional activator protein solR [Brucella canis ATCC 23365]
 gi|189023440|ref|YP_001934208.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225626726|ref|ZP_03784765.1| Transcriptional activator protein solR [Brucella ceti str. Cudo]
 gi|237814657|ref|ZP_04593655.1| Transcriptional activator protein solR [Brucella abortus str. 2308
           A]
 gi|260546462|ref|ZP_05822202.1| transcriptional activator [Brucella abortus NCTC 8038]
 gi|260563261|ref|ZP_05833747.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M]
 gi|260567174|ref|ZP_05837644.1| transcriptional activator [Brucella suis bv. 4 str. 40]
 gi|260759270|ref|ZP_05871618.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           4 str. 292]
 gi|260760992|ref|ZP_05873335.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260885067|ref|ZP_05896681.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           9 str. C68]
 gi|261215322|ref|ZP_05929603.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           3 str. Tulya]
 gi|261218189|ref|ZP_05932470.1| autoinducer-binding domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261221416|ref|ZP_05935697.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94]
 gi|261314598|ref|ZP_05953795.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261316846|ref|ZP_05956043.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261320963|ref|ZP_05960160.1| autoinducer-binding domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261324304|ref|ZP_05963501.1| autoinducer-binding domain-containing protein [Brucella neotomae
           5K33]
 gi|261751515|ref|ZP_05995224.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5
           str. 513]
 gi|261756080|ref|ZP_05999789.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3
           str. 686]
 gi|261759304|ref|ZP_06003013.1| transcriptional activator [Brucella sp. F5/99]
 gi|265987917|ref|ZP_06100474.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|265992391|ref|ZP_06104948.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265994134|ref|ZP_06106691.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|265997378|ref|ZP_06109935.1| autoinducer-binding domain-containing protein [Brucella ceti
           M490/95/1]
 gi|297247581|ref|ZP_06931299.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
 gi|17983788|gb|AAL52939.1| transcriptional activator, luxr family [Brucella melitensis bv. 1
           str. 16M]
 gi|161334989|gb|ABX61294.1| Transcriptional activator protein solR [Brucella canis ATCC 23365]
 gi|189019012|gb|ACD71734.1| Transcriptional activator, LUXR family [Brucella abortus S19]
 gi|225618383|gb|EEH15426.1| Transcriptional activator protein solR [Brucella ceti str. Cudo]
 gi|237789494|gb|EEP63704.1| Transcriptional activator protein solR [Brucella abortus str. 2308
           A]
 gi|260096569|gb|EEW80445.1| transcriptional activator [Brucella abortus NCTC 8038]
 gi|260153277|gb|EEW88369.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M]
 gi|260156692|gb|EEW91772.1| transcriptional activator [Brucella suis bv. 4 str. 40]
 gi|260669588|gb|EEX56528.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           4 str. 292]
 gi|260671424|gb|EEX58245.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260874595|gb|EEX81664.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           9 str. C68]
 gi|260916929|gb|EEX83790.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           3 str. Tulya]
 gi|260920000|gb|EEX86653.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94]
 gi|260923278|gb|EEX89846.1| autoinducer-binding domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261293653|gb|EEX97149.1| autoinducer-binding domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261296069|gb|EEX99565.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261300284|gb|EEY03781.1| autoinducer-binding domain-containing protein [Brucella neotomae
           5K33]
 gi|261303624|gb|EEY07121.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261739288|gb|EEY27284.1| transcriptional activator [Brucella sp. F5/99]
 gi|261741268|gb|EEY29194.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5
           str. 513]
 gi|261745833|gb|EEY33759.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3
           str. 686]
 gi|262551846|gb|EEZ07836.1| autoinducer-binding domain-containing protein [Brucella ceti
           M490/95/1]
 gi|262765115|gb|EEZ11036.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|263003457|gb|EEZ15750.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|264660114|gb|EEZ30375.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|297174750|gb|EFH34097.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
          Length = 238

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ ++      +M++  DV       
Sbjct: 115 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 174

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234

Query: 243 NNIV 246
             ++
Sbjct: 235 FGLL 238


>gi|319650145|ref|ZP_08004294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317398326|gb|EFV79015.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 212

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A    + F+  +     D  LT RE + L  I EG T+ EI+  L I   TV  ++++I
Sbjct: 129 VAGKMVSRFREKEKKPHDD--LTEREFDVLLCIGEGMTNQEISEELFIGIKTVKTHVSNI 186

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K     R+ A  YA RN I+
Sbjct: 187 LSKLGVTDRTQAAVYANRNGII 208


>gi|114704741|ref|ZP_01437649.1| putative transcription regulator protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539526|gb|EAU42646.1| putative transcription regulator protein [Fulvimarina pelagi
           HTCC2506]
          Length = 226

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 14/205 (6%)

Query: 56  VGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-- 112
            G ++   +      EQ L    +  +W     R    +E  ++  V+   +    P   
Sbjct: 21  YGFTYAAALALPSTDEQGLQTRYLMGNWSHGFQRSYEAAELHRHKVVVATLSTDPMPFEW 80

Query: 113 -FHTLPENITPPAGMDNRYCS---------LTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              TL     P      R  +         L         G +       +  R  ++E+
Sbjct: 81  DIDTLYGISDPKPSKGARLVAEAGWSEGVLLPVHGMTAMCGALSFAGPNALPSRTVIYEM 140

Query: 163 GLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              A     M  +      + +  LT RE +CL     GKTS EI ++L +S  T++ Y+
Sbjct: 141 QSFAFVFFGMLAAVRFDENRRNNPLTPRERDCLRLAMLGKTSSEIGIVLSLSEYTISQYL 200

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +  RK     R+  +A A +   +
Sbjct: 201 TAAQRKLDASNRTHTVAMAAQLGYL 225


>gi|116511719|ref|YP_808935.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125624447|ref|YP_001032930.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|12483697|gb|AAG53723.1|AF172650_3 RrD [Lactococcus lactis subsp. cremoris MG1363]
 gi|116107373|gb|ABJ72513.1| DNA-binding response regulator (Rec-wHTH domains) [Lactococcus
           lactis subsp. cremoris SK11]
 gi|124493255|emb|CAL98222.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071234|gb|ADJ60634.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 209

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E     ++  D   D +  +  ++K    N  ++   L    F    +     A     Y
Sbjct: 46  EMLDPDVILMDLVMDRLDGIGATQKILAKNPERKILILTS--FIDDEKVFPALAAGAKGY 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T   A I + +  +     ++      +I   A  +    + YD       +L+ RE
Sbjct: 104 ILKTSQAAEIAMAIRKVANGEDVLSDAVKEKI---AQQKHRKHELYD-------DLSKRE 153

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  ++ G ++ EIA  L IS  TV  ++++I  K     R+ A  YA+++++V
Sbjct: 154 LEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209


>gi|320007816|gb|ADW02666.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 220

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R  +  IG  AA           H G   EL+GREVE L  ++EG+++  I V +G+S  
Sbjct: 129 RPGMAPIGANAARMHRRPPGTPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +++A I RK  T  R+G +A A+R  I+
Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|254718404|ref|ZP_05180215.1| Transcriptional activator, LUXR family protein [Brucella sp. 83/13]
 gi|306840172|ref|ZP_07472955.1| LuxR family transcriptional regulator [Brucella sp. NF 2653]
 gi|306844457|ref|ZP_07477047.1| LuxR family transcriptional regulator [Brucella sp. BO1]
 gi|306275270|gb|EFM57020.1| LuxR family transcriptional regulator [Brucella sp. BO1]
 gi|306404737|gb|EFM61033.1| LuxR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 235

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ ++      +M++  DV       
Sbjct: 112 ISQPCWAAQGVFGLLSFVRTGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 171

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 231

Query: 243 NNIV 246
             ++
Sbjct: 232 FGLL 235


>gi|26990830|ref|NP_746255.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148546967|ref|YP_001267069.1| LuxR family transcriptional regulator [Pseudomonas putida F1]
 gi|24985838|gb|AAN69719.1|AE016608_5 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
 gi|148511025|gb|ABQ77885.1| regulatory protein, LuxR [Pseudomonas putida F1]
 gi|313498014|gb|ADR59380.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 82

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N   S          LT RE + L W + GK+S EI  IL    +TVN ++++I+RK   
Sbjct: 4   NARHSQQPLADAPVRLTPREQQVLLWCAYGKSSWEIGQILECKESTVNFHVSNILRKFEV 63

Query: 231 KTRSGAIAYAVRNNIV 246
            TR  A+  A+R  ++
Sbjct: 64  PTRVAAVIKAIRYGML 79


>gi|228985356|ref|ZP_04145515.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774309|gb|EEM22716.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 211

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 151 LTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|296269819|ref|YP_003652451.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296092606|gb|ADG88558.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 226

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 3/143 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F      +       + +         +   + ++     I+         L
Sbjct: 80  PRVLVLTTFDLDEYIVEALRAGASGFLLKDVPPDELVQAIRVVAAGDAIVAPSVTRR--L 137

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L  + A +  +         E LT RE+E L  I++G ++ EIA  L +S  TV  ++ +
Sbjct: 138 LDKFAALLPPADRQPTPALLERLTERELEVLRLIAKGMSNAEIAAELVVSETTVKTHVGN 197

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K   + R  A+  A    +V
Sbjct: 198 VLTKLGLRDRVQAVVLAYETGLV 220


>gi|209809708|ref|YP_002265247.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
 gi|208011271|emb|CAQ81712.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
          Length = 247

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 82/228 (35%), Gaps = 17/228 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +++ ++         ++ +  LT+ +   ++LL         K D  +  ++P       
Sbjct: 11  EIINKIRLSQTNNDMSLCLQELTKILHCEYYLLAIISQKTMIKSDIKILDNYPLYWRNYY 70

Query: 91  ALSEKDKYYNVLQRPTELFCPV----FHTLPE-----NITPPAGMDNRYCSLTFDVA--R 139
             +   K   ++        P+    F    +     N+   A +   Y   +F +    
Sbjct: 71  DEANLIKDDPIVDYSFSHHSPINWSIFEKQKKMSNQINVIEEAKISGLYSGFSFPIHTKD 130

Query: 140 IRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              G++      +    D L+         +L     +  +          +LT RE EC
Sbjct: 131 GGFGMISFASSQKEKYIDNLFLNACMSVPLILPELLDSNQRITKEDQQVHTKLTKREKEC 190

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L W  EGK+  EI+ ILG S  TV  ++A+   K     R  +I+ A+
Sbjct: 191 LIWSCEGKSRWEISKILGCSERTVTFHLANSQLKLGANNRCQSISKAI 238


>gi|66045102|ref|YP_234943.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63255809|gb|AAY36905.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 240

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|89894389|ref|YP_517876.1| hypothetical protein DSY1643 [Desulfitobacterium hafniense Y51]
 gi|89333837|dbj|BAE83432.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 214

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L   +      D    +L   + ++  G  +L P     L  +L            
Sbjct: 92  VFQVLQLGVAGYLLKDVDPKTLIDSIRKVHSGQPILSPAVTGKLLGQLVHP--------- 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         L+ RE++ LT++ +G ++ EI   L IS  TV N+++SI RK A +
Sbjct: 143 ------TQNRDTCGLSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVE 196

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   AV+  +V
Sbjct: 197 DRTQAALKAVKLKLV 211


>gi|77463693|ref|YP_353197.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462526|ref|YP_001043640.1| autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639538|ref|YP_002525800.1| Autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332558550|ref|ZP_08412872.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N]
 gi|2360976|gb|AAC46021.1| autoinducer sythesis regulator [Rhodobacter sphaeroides]
 gi|77388111|gb|ABA79296.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126104190|gb|ABN76868.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221160319|gb|ACM01299.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides KD131]
 gi|332276262|gb|EGJ21577.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N]
          Length = 233

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 29/195 (14%)

Query: 60  HFL---LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           H++   L R D    +   SI   DW             +++     R        F   
Sbjct: 57  HYMRRNLHRVDPTIHKSALSIAPVDWS-------RFERDERF-----RAVFFAAEDFGIT 104

Query: 117 PENITPPA---GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           P+ +T P      D    S+T + AR         P+     R  + E+ + A +  +  
Sbjct: 105 PQGLTVPVRGPYGDRGLLSVTRNCAR---------PEWEKHKRAVIGELQVAAVHLHDAV 155

Query: 174 KSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              DV     +   L+ RE+E L W + GK+  +I  ILGIS  TV  ++ S   K  T 
Sbjct: 156 MRSDVISRALRQPRLSTREIEVLQWAAAGKSQTDIGDILGISHRTVEVHLRSAREKLGTL 215

Query: 232 TRSGAIAYAVRNNIV 246
           +   A+  A+   +V
Sbjct: 216 STVQAVGRAIGLGLV 230


>gi|330973265|gb|EGH73331.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 240

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|295703554|ref|YP_003596629.1| two-component response regulator LiaR [Bacillus megaterium DSM 319]
 gi|294801213|gb|ADF38279.1| two-component response regulator LiaR [Bacillus megaterium DSM 319]
          Length = 208

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 16/169 (9%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136
           P  ++  + + E D        + Q P      V   L +    PA       Y   T  
Sbjct: 48  PDIILMDLVMEEMDGIEATKQLIKQWPEAKVIIVTSFLDDEKVYPALEAGATSYLLKTSK 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   +   +    ++  +      +     + M K    H     ELT RE+E L  
Sbjct: 108 AGEIAAAIRRTYEGQSVLEPE------VTGKMMSKMRKPSLPHE----ELTAREMEILLL 157

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +++GKT+ EIA  L I+  TV  ++++++ K   + R+ A+ YA ++ +
Sbjct: 158 MTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHKL 206


>gi|256783882|ref|ZP_05522313.1| two-component regulator [Streptomyces lividans TK24]
 gi|289767766|ref|ZP_06527144.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289697965|gb|EFD65394.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 7/175 (4%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V    P  L+  + +   D      +      C V      ++           +  F +
Sbjct: 44  VERYAPDVLLLDIRMPVMDGLDAARRVCARSACKVVMLTTFDLDEYVYEALYAGASGFLL 103

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY------DVHWGKDFELTGREV 191
             +R   ++      +   D L    +     A++ +        DV   +   LT REV
Sbjct: 104 KDVRRDDLVHAV-RVVAAGDSLLAPAVTRRLVADIVRRRREEAAADVTPQRLEALTAREV 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G ++ EIA  L +S +TV  ++++++ K   + R  A+  A    +V
Sbjct: 163 ETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGLV 217


>gi|117165074|emb|CAJ88627.1| putative two component response regulator-like [Streptomyces
           ambofaciens ATCC 23877]
          Length = 223

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 42/76 (55%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +  +    H  ++  LT RE E L  ++EG ++ +IA  LGIS + V   +AS++ K   
Sbjct: 146 DRLRESGQHRPREVSLTARENEVLLLLAEGMSNKQIARRLGISSHGVKRIVASLLLKLGA 205

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+  A++N ++
Sbjct: 206 PNRTAAVVTAIQNGLI 221


>gi|320449580|ref|YP_004201676.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01]
 gi|320149749|gb|ADW21127.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01]
          Length = 217

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 35/195 (17%)

Query: 60  HFLLVRWDLF----QEQKLDSI-----VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           H L  R D+     Q   LD +     +  +WP   V  + +  +D Y            
Sbjct: 42  HALEARPDVILMDIQMPNLDGVQATQAILKEWPEAKVIILTMYRQDAY------------ 89

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
            VF  +          D     L   + R+  G             + L +  L      
Sbjct: 90  -VFEAVKAGARGYLLKDTDASELIGAIRRVHAG-------------EVLLDAELAGRIIQ 135

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +     +       EL+ RE++ L  +++G T+ EIA  L +S  TV N ++ I +K   
Sbjct: 136 DFRAKKESSLPLHAELSEREIQILKLVAQGYTNLEIAAELQLSEKTVRNRLSEIFQKLHL 195

Query: 231 KTRSGAIAYAVRNNI 245
             R+ A  YA+R  +
Sbjct: 196 NNRTQAALYAIREGL 210


>gi|222110965|ref|YP_002553229.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|221730409|gb|ACM33229.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 262

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H      T     ++ + S    V ++  G   + P     L  R    G  A +   
Sbjct: 134 VLHAFELGATGYLVKNSWFGSYPQAVLQVANGGASITPNLARRLLQRFDPSGAAAPHAQR 193

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       +   L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   +
Sbjct: 194 RVEQ------ETERLSQREKEVLRMVASGYTSAEIGNRLFISSLTVNTHIKNIYRKLQVR 247

Query: 232 TRSGAIAYAVRNNI 245
           TR+ A+ +A    +
Sbjct: 248 TRAQAVRFASLRGL 261


>gi|298251862|ref|ZP_06975665.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546454|gb|EFH80322.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 48/100 (48%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L+    R +  + +    + A     + KS         EL+ RE++ L  I++G+++ E
Sbjct: 116 LVETVRRAVRGESVLHPQVAARVVHELRKSKQTSTNPFAELSERELDVLRLIADGRSNAE 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L IS  TV  ++++I+ K     R+ A  +A +  +
Sbjct: 176 IASRLSISEKTVKGHVSNILSKLYLLDRTQAAVFAWQQGL 215


>gi|28869252|ref|NP_791871.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852493|gb|AAO55566.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|330964604|gb|EGH64864.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016917|gb|EGH96973.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 240

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                +  L    R I  ++ + +  L     ++ +           LT RE+E L W  
Sbjct: 135 ESVTSVCTLSEVERTISAEQKYLVSSLMPVLHSVARGLKFSSR---GLTLRELEVLQWAR 191

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|315283654|ref|ZP_07871783.1| transcriptional regulatory protein DegU [Listeria marthii FSL
           S4-120]
 gi|313612706|gb|EFR86719.1| transcriptional regulatory protein DegU [Listeria marthii FSL
           S4-120]
          Length = 69

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++ 
Sbjct: 6   LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHG 64


>gi|307704250|ref|ZP_07641169.1| response regulator [Streptococcus mitis SK597]
 gi|307622161|gb|EFO01179.1| response regulator [Streptococcus mitis SK597]
          Length = 210

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           P  +V  + + E +     L    + P      V   L      P               
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAG---------- 96

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTW 196
             R  ++       ++   R    G LA  Q    K   +  H     +LT RE + L  
Sbjct: 97  -ARGYMLKTSRADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|229196490|ref|ZP_04323234.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228586846|gb|EEK44920.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 214

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 39/71 (54%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S          LT RE E L  I++G+++ EIA +L I+  TV  ++++++ K     R
Sbjct: 137 RSVVKKENPFSMLTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDR 196

Query: 234 SGAIAYAVRNN 244
           + A  YAV++ 
Sbjct: 197 TQAALYAVKHG 207


>gi|167581251|ref|ZP_02374125.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167619336|ref|ZP_02387967.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257138549|ref|ZP_05586811.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
          Length = 237

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 140 IRIGLMLLFPKGRIILRD-------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
             +G++ L      +          R+  +   A           +    +  LT REVE
Sbjct: 123 GGMGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A    ++
Sbjct: 183 VLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|91976651|ref|YP_569310.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91683107|gb|ABE39409.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
          Length = 240

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 65/203 (32%), Gaps = 13/203 (6%)

Query: 57  GASHFLLVRWDL---FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV- 112
           G SH +           ++++ ++V   WP    R             ++R T    P  
Sbjct: 37  GFSHVIAGVIPTPGTSAKEQIANVVLHQWPDVWSRRYFSKGYIFTDPAIRRVTSSMVPFS 96

Query: 113 ----FHTLPENITPPAGMDNRY-----CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
               +           G    +      ++           + +      +       + 
Sbjct: 97  WTELWDHDSPAGHRILGEAAEFGLKEGFTVPMVTLDGHSAGLSIAGAITELPPHLRGPVQ 156

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++A Y                 LT RE + L WI+EGKT  EIA IL +S + V+     
Sbjct: 157 MMAIYSFARAAHLRERPPAPVTLTIREADVLHWIAEGKTDWEIARILQVSEHLVDKVARQ 216

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K     R  A+  A+R  ++
Sbjct: 217 IKSKFQVVNRVQAVVQAMRAGVI 239


>gi|47565618|ref|ZP_00236658.1| MW1789 [Bacillus cereus G9241]
 gi|47557254|gb|EAL15582.1| MW1789 [Bacillus cereus G9241]
          Length = 211

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|330810585|ref|YP_004355047.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378693|gb|AEA70043.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 230

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 8/156 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNR---YCSLTFDVARIRIGLM 145
            L   +    + + P     PV     L E+     G +     Y +       +   + 
Sbjct: 66  GLDGFETCRRIKEHPANADIPVLFMTALTESRHVVQGFEVGGSDYVTKPIQTDEVLARVA 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                 RI+L  R       AA   +   ++ V   + F+LTGREVE L W++ GKT+ +
Sbjct: 126 AHLRTSRILLSAR--AASQPAAPSLDDEPAHRVLSAR-FQLTGREVEVLRWVACGKTNRD 182

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           I  IL +S  TVN ++  +  K   +TR+ A + A+
Sbjct: 183 IGTILDLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218


>gi|302185070|ref|ZP_07261743.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
          Length = 240

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEVARTISAEQKYLMSSLMPVLHSVARGLKFSSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|294812452|ref|ZP_06771095.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441089|ref|ZP_08215823.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325051|gb|EFG06694.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 236

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 2/147 (1%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             +  P  L    F              + +       A +   + ++     ++     
Sbjct: 87  EGVSGPRVLMLTTFDVDDYVYEALRSGASGFLLKDAPPADLIAAVRVVAAGEALLAPSVT 146

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               L+A + A           +  ELT RE E L  I++G ++ EIA  L ++  TV  
Sbjct: 147 RR--LIADFAARHPAPRKGTGHRPKELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKT 204

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I  I+ K   + R+ A+ +A  + +V
Sbjct: 205 HIGRILAKLRLRDRAQAVIFAYESGLV 231


>gi|219668814|ref|YP_002459249.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219539074|gb|ACL20813.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 212

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L   +      D    +L   + ++  G  +L P     L  +L            
Sbjct: 90  VFQVLQLGVAGYLLKDVDPKTLIDSIRKVHSGQPILSPAVTGKLLGQLVHP--------- 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         L+ RE++ LT++ +G ++ EI   L IS  TV N+++SI RK A +
Sbjct: 141 ------TQNRDTCGLSDRELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVE 194

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   AV+  +V
Sbjct: 195 DRTQAALKAVKLKLV 209


>gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 212

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 71/198 (35%), Gaps = 18/198 (9%)

Query: 54  EYVGASHFLLVRWDLFQEQKLD------SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           +Y+    + +V      E           ++  D     +      E  +  +       
Sbjct: 22  DYLEFRGYEVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDGYTFVETIRSNSATDWIPV 81

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +F        + +       + Y    F+   +   +         +L+           
Sbjct: 82  IFLSARGQTADRVRGLTTGADVYMVKPFEPEELVAQVESSLKHTERLLQ----------- 130

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              N+     +   ++ ELT  E + + +++ G ++ EIA +LG+S+ TV +++++++ K
Sbjct: 131 -VQNVGIQPVIKLDREIELTPTETKVIQYVARGLSNREIAEVLGVSQRTVESHVSNMLGK 189

Query: 228 TATKTRSGAIAYAVRNNI 245
           T    R+    +A+ + +
Sbjct: 190 TGLHNRTELARWAIESGL 207


>gi|260886222|ref|ZP_05897485.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC
           35185]
 gi|330839784|ref|YP_004414364.1| two component transcriptional regulator, LuxR family [Selenomonas
           sputigena ATCC 35185]
 gi|260863941|gb|EEX78441.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC
           35185]
 gi|329747548|gb|AEC00905.1| two component transcriptional regulator, LuxR family [Selenomonas
           sputigena ATCC 35185]
          Length = 223

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L   +      D     L   +  +  G   ++P     L +RL+  G+      N
Sbjct: 91  VLELLKNGVLGYLLKDVEPSMLIKAIHVVNEGNAFVYPS----LAERLFG-GVSEDENIN 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   LT RE++ L+ I++G ++ +IA  L +S  TV N++ +I RK    
Sbjct: 146 EKARTMWRESRSERLTSREMDVLSCIAKGFSNQDIAQALFVSEKTVKNHLTNIFRKLNVN 205

Query: 232 TRSGAIAYAVRNNI 245
            R+ A+ Y +++ I
Sbjct: 206 DRTQALIYVLKHKI 219


>gi|301053804|ref|YP_003792015.1| response regulator [Bacillus anthracis CI]
 gi|300375973|gb|ADK04877.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 209

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 149 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207


>gi|228991252|ref|ZP_04151210.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228997351|ref|ZP_04156973.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|229004976|ref|ZP_04162703.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228756324|gb|EEM05642.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228762443|gb|EEM11368.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|228768476|gb|EEM17081.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 211

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV+N +
Sbjct: 151 LTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGV 210

Query: 246 V 246
           V
Sbjct: 211 V 211


>gi|148658346|ref|YP_001278551.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570456|gb|ABQ92601.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 216

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 14/161 (8%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +R +  +       VL    +    VF ++          D    +L   + R+  G 
Sbjct: 68  EAIRAIIAAWSQARIIVLTTF-DRDDYVFQSVRAGAMGYLLKDAPAEALLQTIRRVHAGE 126

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + + P+    +  R          +A             F+L+ RE E L  +++G ++ 
Sbjct: 127 VFIQPE----IASRTLREAATGRRRAGTIP---------FDLSEREREVLVLLAQGLSNR 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L I+  TV N++++I+ K   + R+ A   A R  +
Sbjct: 174 EIAGRLSITEGTVKNHVSNILAKLQAENRTQAANIARREGL 214


>gi|229818737|ref|YP_002880263.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564650|gb|ACQ78501.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 224

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 52/156 (33%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++           P  L    F      +       + +        RI   + ++   
Sbjct: 65  GIAATAALTRDADAPRVLVVTTFENDDYVLDALRAGASGFLLKRAHPDRIVEAIRVVARG 124

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++  + +  +   +   A    +   H      LT RE E L  ++ G T+ EIA  L
Sbjct: 125 DAVLFPEAVRRLVAASPAGATPSPADGPHGAAIGRLTEREEEVLRLVAAGMTNAEIAAQL 184

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +   TV  ++ +++ K   + R  A   A  +  V
Sbjct: 185 WLGVETVKTHVGNVLAKLGARDRLQAAIVAYESGFV 220


>gi|22298266|ref|NP_681513.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294445|dbj|BAC08275.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 209

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 15/171 (8%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTF 135
            P  +V  + L   D      +   E      +      +  E +   +   + YC    
Sbjct: 48  QPQVIVMDIGLPRLDGIAATQRLKREFPDIRVVMLTSHQSALEAVAALSSGADAYCIKGE 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + R+ + +         +          +A +      S       D+ L+ RE++ L 
Sbjct: 108 RIERLLMAIAAAQEGATYLDP-------QIARHVIQHLHSPQPTM--DYHLSQRELDVLK 158

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EG ++ EIA  L +S NTV  ++  I+ K A   R  A   A+RN +V
Sbjct: 159 LMVEGYSNPEIAGKLFLSPNTVKTHVRGILNKLAVDDRVQAAVVALRNGLV 209


>gi|16330324|ref|NP_441052.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1652813|dbj|BAA17732.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 226

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 10/169 (5%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVF--HTLPENITPPAGMDNRYCSLTFDV 137
           P  +V  + L   D       + Q   ++   V   HTLP  I            +    
Sbjct: 63  PDLIVMDIGLPGLDGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGAT 122

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
               I  +     G   L  ++  +        N+             L+ RE++ L  I
Sbjct: 123 LERLILAIAAAQDGATYLDPQIARV-----VVENLKPPVPEGQADVSSLSEREIDVLKLI 177

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EGK++ EIA  L +S NT+  ++  IM K +   R  A   A+R+ +V
Sbjct: 178 VEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226


>gi|330940036|gb|EGH43227.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 240

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|306828929|ref|ZP_07462121.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304429107|gb|EFM32195.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 210

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       ELT RE + L  
Sbjct: 107 ADELLHAVRKVASGELAIEQ----EVSKKVEYHRNHIELHE-------ELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|298247701|ref|ZP_06971506.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550360|gb|EFH84226.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 231

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 13/222 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +D  +     +  + E  G   F LV  D         +V    P  ++  + +
Sbjct: 7   VIRVVVVDDHLVVREGLRMMLELAG-EGFALVG-DAADGATALRVVEELQPDVVLMDLRM 64

Query: 93  SEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLML 146
              D    +       P ++   +  T  E+     G+ +  C   L           + 
Sbjct: 65  PGMDGLEAIAHIRNAWP-QIAVVILTTYNEDDLMVRGLRSGACGYLLKDTNRETLFHAIQ 123

Query: 147 LFPKGRIILRDRLWE--IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +G ++L+  +      L ++   +   S+    G   ELT RE E L  ++ G+ S 
Sbjct: 124 AAARGEMLLQPEMLARVFALTSSQAKDAAPSFGNVEG--MELTEREREILQGVARGERSK 181

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIAV LGIS  TV +++ASI  K    +R+ A+A A+   ++
Sbjct: 182 EIAVRLGISIRTVGSHLASIYTKLGVDSRASAVALAIERGLL 223


>gi|170694163|ref|ZP_02885318.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170140903|gb|EDT09076.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 262

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 20/261 (7%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLA--RMIPLDCTVSWTMRMYALTEYVGASHFL 62
           ++ V+   + +D+ R    S            R+       S           +G  H++
Sbjct: 1   MKHVSRRRSNDDQHRPPPTSGRAQGGAPAPAMRLAYATDITSLVESFGHEAGKLGFPHYM 60

Query: 63  LVRWDLFQEQKLD----SIVSSDWPFDLVR-----CMALSEKDKYYNVLQRPTELFCPVF 113
           + R    +          ++ + +P D VR       A ++       LQ     +  + 
Sbjct: 61  ISRVTRSRSTSTRRTALEMIGARYPQDWVRYYQRRDYASTDPVHRAAFLQSAPFRWHDII 120

Query: 114 HTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL-----RDRL-WEIGLL 165
                       AG       L+  V +    ++L    G +         RL + I + 
Sbjct: 121 GLSKAERRLLDEAGEAGLRAGLSIPVHQSDGSILLFNLSGPLRSVNDTINSRLAYLISVQ 180

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
             Y+ +              LT R++ECLTW++ GKTS EI  ILG SR TV  +I   M
Sbjct: 181 FHYELHRLALIPSRRMAHL-LTARQLECLTWVARGKTSAEIGEILGRSRYTVEFHIKEAM 239

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
                ++R+ A  +A    I+
Sbjct: 240 DALNIRSRTAAAVHATVQGII 260


>gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 222

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 F+LT REV+ L W++ GKT+ +IA IL +S  TVN ++  I  K   +TR+ A 
Sbjct: 153 PRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAAT 212

Query: 238 AYAV 241
           + A+
Sbjct: 213 SVAL 216


>gi|119485648|ref|ZP_01619923.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119456973|gb|EAW38100.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 226

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 8/176 (4%)

Query: 78  VSSDWPFDLV------RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-AGMDNRY 130
           + S   FD+V        +   E  +     Q    +     H+    I          Y
Sbjct: 46  LVSQHSFDVVILDVGLPGIGGVEACRQIKQKQPLLPVLVLTSHSQKPLINRIIEAKAQGY 105

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
           C        + + +  +             EI       A + +  + +   +  LT RE
Sbjct: 106 CLKGIAPEALILAIRSVAAGASWWDSIATQEIQKTFGQFAEVPEGSEAYSASN-PLTKRE 164

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I+ GK++ EIA IL I+  TV  ++ +I++K   + R+ A   A++  +V
Sbjct: 165 QEILALIASGKSNQEIADILYIAPGTVRVHVHTILKKLNARDRTQAALVAIQKKLV 220


>gi|75910715|ref|YP_325011.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75704440|gb|ABA24116.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 236

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 62/170 (36%), Gaps = 14/170 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ---RPTELFCPVF---HTLPENITPPAGMDNRYCSLTFD 136
           P  +V  + L   D      Q      E    +     T  E I   +   + YC     
Sbjct: 75  PDLVVMDIGLPRLDGIATTQQIKAALPETHVVMLTSHKTETEIIAALSSGADAYCIKGAS 134

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           + R+   +         +          +A    +  K      G    L+GRE+E L  
Sbjct: 135 IERLLNAIAAAVDGAAYLDP-------QIARQVIDHLKPPSAK-GNTANLSGRELEVLKL 186

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EG ++ EIA  L +S NTV  ++  IM K A   R  A   A+R+ +V
Sbjct: 187 MVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSGLV 236


>gi|313679613|ref|YP_004057352.1| two component LuxR family transcriptional regulator [Oceanithermus
           profundus DSM 14977]
 gi|313152328|gb|ADR36179.1| two component transcriptional regulator, LuxR family [Oceanithermus
           profundus DSM 14977]
          Length = 219

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D    +L   V R+  G         ++L   L E          
Sbjct: 93  VFEAVKAGARGYLLKDVDAEALVDAVRRVNEG--------EVLLDAELAE----QIIHDF 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K   +      +LT REV+ L  +++G T+ EIA  LGIS  TV N ++ I  K    
Sbjct: 141 RAKRDVLPQAHHADLTDREVQILRLLAQGATNQEIADELGISEKTVRNRLSEIFSKLHLN 200

Query: 232 TRSGAIAYAVRNNI 245
            R+ A  YA+R  +
Sbjct: 201 NRTQAALYAIREGL 214


>gi|302035966|ref|YP_003796288.1| putative LuxR family transcriptional regulator [Candidatus
           Nitrospira defluvii]
 gi|300604030|emb|CBK40362.1| putative Transcriptional regulator, LuxR family [Candidatus
           Nitrospira defluvii]
          Length = 265

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+  + +   + +        L+ RE E L W++ GKT+ EI+VIL +S NTV  ++ ++
Sbjct: 163 LSYMRCHSAWNPERPAPPPTLLSKREEEILRWVAAGKTNWEISVILKVSLNTVKFHLKNV 222

Query: 225 MRKTATKTRSGAIAY 239
            +K   + R  AIAY
Sbjct: 223 FQKIGVENRWSAIAY 237


>gi|145666435|gb|ABP88722.1| transcriptional activator protein [Pseudomonas corrugata]
          Length = 242

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPENI---------TPPAGMDNR 129
           S++P + V     +   K   V+        P F + +P  I         +   G+   
Sbjct: 63  SNYPSEWVDTYRKNSLYKSDPVMANTAITATPFFWNEIPAEIDNNPEIFDQSASYGIKQG 122

Query: 130 YCSLTFDVARIRIGLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           Y     +  R    L L   +      II+R  L+ I  L+   AN ++  +     + +
Sbjct: 123 YTVPIHEPGRAFGSLHLSSEENDPDFPIIVRSNLFIIKTLS-VIANQYRPMETTIESNLK 181

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L W++ GK   EI +I+ I+  TV  +   +  K        A+  AV+ N 
Sbjct: 182 LSPREIEFLRWLALGKNYKEIGLIMNITERTVKFHAKQMTEKMDCTNVKQAMIKAVQLNF 241

Query: 246 V 246
           V
Sbjct: 242 V 242


>gi|332526102|ref|ZP_08402240.1| response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332109945|gb|EGJ10573.1| response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 245

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 11/145 (7%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL---------RDRLWEIG 163
           F  L           +R+  L  ++ +I  G   L P     L          D   + G
Sbjct: 101 FPALQHGADGYLLKVDRFEVLVEELQKIVRGQPPLSPAIARRLLTHFRQGAGPDLPPDSG 160

Query: 164 LLA--AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            ++   +  +     +    +   LT RE E LT++S+G T  EIA ++GI   TVN++I
Sbjct: 161 FVSTTGFTTSRPVPMEKALPEHERLTPRESEVLTYLSKGFTIKEIASLMGIKWFTVNDHI 220

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            SI +K    +R+ A   A +  +V
Sbjct: 221 KSIYKKLNVSSRAEAAVLASKQGLV 245


>gi|269962779|ref|ZP_06177120.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832469|gb|EEZ86587.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 218

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 46/82 (56%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L  Y      +Y +   ++ ELT REV+ L  + +G ++ EIA  L IS +T+ +++
Sbjct: 136 LEQLLTYYKGKESTYSIEPAEEVELTRREVQVLQMLKDGGSNMEIADSLFISEHTIKSHL 195

Query: 222 ASIMRKTATKTRSGAIAYAVRN 243
            +I RK   K R+ A ++A RN
Sbjct: 196 YNIFRKIEVKNRTQATSWAKRN 217


>gi|265983368|ref|ZP_06096103.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13]
 gi|264661960|gb|EEZ32221.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13]
          Length = 238

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ ++      +M++  DV       
Sbjct: 115 ISQPCWAAQGVFGLLSFVRTGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 174

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 175 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234

Query: 243 NNIV 246
             ++
Sbjct: 235 FGLL 238


>gi|271965569|ref|YP_003339765.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508744|gb|ACZ87022.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 216

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 6/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +    F              + +         I   +  +     +I       +  
Sbjct: 78  PKVIVLTTFDLDEYAFAALRAGASGFLLKDAPAEEIVAAVRTVHEGDAVIAPSTTRRL-- 135

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                 ++  +  +       LT RE E L  I++G+T+ EIA  L +S  TV  ++  I
Sbjct: 136 ----LDHVAPTLPLPADPPVPLTDREREVLRHIAQGETNAEIAGCLFLSEGTVKTHVGRI 191

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  +  +
Sbjct: 192 LAKLQLRDRVQAVIWAYEHGQI 213


>gi|329940703|ref|ZP_08289983.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329299997|gb|EGG43895.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 213

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 16/170 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D   + L+R  EL  P        F      +         Y     
Sbjct: 51  PDVILMDVKMPGVDG-IDALRRLRELDHPARVLVVTSFTEQRTVVPALRAGAAGYVYKDI 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++  +      LLA       +      G+   LT RE E L 
Sbjct: 110 DPDALAGAIRSVHAGHVLLQPE--VAGALLAQ------EDTGPAQGRAGTLTEREREVLG 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 162 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGV 211


>gi|298242057|ref|ZP_06965864.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555111|gb|EFH88975.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 219

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 46/101 (45%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L+    + +  + +    + A     +  +         EL+ RE+E L  I+ G ++ E
Sbjct: 116 LVEVARKAVRGESVLHPRVAARVVRELRGTRSEAPNPFVELSERELEVLRLIAGGLSNTE 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS  TV  ++++I+ K     R+ A  +A +  ++
Sbjct: 176 IAARLTISEKTVKGHLSNILSKLHLMDRTQAAVFAWQQGLI 216


>gi|163790348|ref|ZP_02184780.1| DNA-binding response regulator, LuxR family protein [Carnobacterium
           sp. AT7]
 gi|159874419|gb|EDP68491.1| DNA-binding response regulator, LuxR family protein [Carnobacterium
           sp. AT7]
          Length = 210

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L           +   ++   +     G ++L P+    +  RL +  +   +   
Sbjct: 90  VYPALEAGAASYILKTSTASTIANAIRSTYKGEIILEPEVTGKMMARLTKKQVHQLH--- 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        +LT RE E L  IS+G ++ EIA  L I+  TV  ++++I+ K   +
Sbjct: 147 ------------DDLTNREQEILMLISQGNSNQEIADALFITLKTVKTHVSNILAKLEVE 194

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YA +++++
Sbjct: 195 DRTQAAIYAFKHHLI 209


>gi|157693715|ref|YP_001488177.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194015458|ref|ZP_03054074.1| response regulator [Bacillus pumilus ATCC 7061]
 gi|157682473|gb|ABV63617.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194012862|gb|EDW22428.1| response regulator [Bacillus pumilus ATCC 7061]
          Length = 211

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++GK++  IA  L I+  TV  +I +I+ K   + R+ A  YA R+ +
Sbjct: 150 LTAREMEILKLIADGKSNKVIAEELFITIKTVKTHITNILSKLDVEDRTQAAVYAHRHKL 209

Query: 246 V 246
           +
Sbjct: 210 I 210


>gi|149915149|ref|ZP_01903677.1| two-component response regulator, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810870|gb|EDM70709.1| two-component response regulator, putative [Roseobacter sp.
           AzwK-3b]
          Length = 299

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G       G  I RD L +I LL         S +      F+LT RE E L W++ GKT
Sbjct: 200 GATSFHFVGVSIARDYLVKITLLEG------ASNEEKLRAAFDLTARESEVLFWLTLGKT 253

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +I+ IL +S  TVN ++  + +K     R+ A   A R
Sbjct: 254 NRDISAILDLSARTVNKHLEQVFQKMGVDNRTSAAVLADR 293


>gi|163846245|ref|YP_001634289.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524000|ref|YP_002568470.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163667534|gb|ABY33900.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447879|gb|ACM52145.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 217

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 18/224 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +D        +  L + + A   ++      Q+     +V    P  ++  + +
Sbjct: 1   MIRILLVDDQTLVRQGIQTLLD-LEADLTVVGTAVNGQQAI--ELVERLQPDVVLMDIRM 57

Query: 93  SEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              D      +          +    F      I         Y     D + I   + +
Sbjct: 58  PVMDGVAATREICRRWPHIGVIILTTFDDDEYVIEGLKAGARGYMLKDADSSDIVASIRI 117

Query: 147 LFPKGRIIL----RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +     +I     R  L E   LAA       S          LT RE++ L  I+ G +
Sbjct: 118 VARGEALIQPSITRKVLAEFSRLAASAPATRPSPLAE-----PLTEREMDVLHGIAAGHS 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV NY++S++ K A + R+ AI  A    ++
Sbjct: 173 NREIADQLCISEGTVKNYVSSLLAKLAVRDRTQAIIRARELGLL 216


>gi|206973784|ref|ZP_03234702.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|222095860|ref|YP_002529917.1| response regulator [Bacillus cereus Q1]
 gi|206747940|gb|EDZ59329.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|221239918|gb|ACM12628.1| response regulator [Bacillus cereus Q1]
          Length = 213

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 39/71 (54%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S          LT RE E L  I++G+++ EIA +L I+  TV  ++++++ K     R
Sbjct: 137 RSVVKKENPFSMLTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDR 196

Query: 234 SGAIAYAVRNN 244
           + A  YAV++ 
Sbjct: 197 TQAALYAVKHG 207


>gi|217959776|ref|YP_002338328.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|229138969|ref|ZP_04267547.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|217064042|gb|ACJ78292.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|228644509|gb|EEL00763.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 209

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 149 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207


>gi|149018085|ref|ZP_01834544.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168482621|ref|ZP_02707573.1| response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|147931649|gb|EDK82627.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|172043787|gb|EDT51833.1| response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|332203553|gb|EGJ17620.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 210

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKILPVLDAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       ELT RE + L  
Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|30262277|ref|NP_844654.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Ames]
 gi|47527561|ref|YP_018910.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49185120|ref|YP_028372.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Sterne]
 gi|49479552|ref|YP_036377.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143191|ref|YP_083638.1| response regulator [Bacillus cereus E33L]
 gi|65319569|ref|ZP_00392528.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|165870591|ref|ZP_02215245.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|167632733|ref|ZP_02391059.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
 gi|167639661|ref|ZP_02397931.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
 gi|170687057|ref|ZP_02878276.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|170706750|ref|ZP_02897209.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|177649611|ref|ZP_02932613.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190565731|ref|ZP_03018651.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|196033705|ref|ZP_03101116.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196039895|ref|ZP_03107198.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
 gi|196046921|ref|ZP_03114142.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|218903406|ref|YP_002451240.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225864244|ref|YP_002749622.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|227814920|ref|YP_002814929.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228914867|ref|ZP_04078473.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228927331|ref|ZP_04090391.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933571|ref|ZP_04096421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945885|ref|ZP_04108228.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229121819|ref|ZP_04251039.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|229184493|ref|ZP_04311697.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|229600887|ref|YP_002866616.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
 gi|254684846|ref|ZP_05148706.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722254|ref|ZP_05184042.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737292|ref|ZP_05194996.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743522|ref|ZP_05201207.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751608|ref|ZP_05203645.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760128|ref|ZP_05212152.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256908|gb|AAP26140.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Ames]
 gi|47502709|gb|AAT31385.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49179047|gb|AAT54423.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Sterne]
 gi|49331108|gb|AAT61754.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51976660|gb|AAU18210.1| response regulator [Bacillus cereus E33L]
 gi|164713746|gb|EDR19269.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|167512370|gb|EDR87746.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
 gi|167531545|gb|EDR94210.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
 gi|170128481|gb|EDS97349.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|170669108|gb|EDT19852.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|172084685|gb|EDT69743.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190563758|gb|EDV17723.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993385|gb|EDX57342.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196022296|gb|EDX60982.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|196029154|gb|EDX67758.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
 gi|218535372|gb|ACK87770.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225790573|gb|ACO30790.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|227003571|gb|ACP13314.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228598993|gb|EEK56609.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228661608|gb|EEL17228.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228813759|gb|EEM60037.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826031|gb|EEM71814.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832343|gb|EEM77920.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228844783|gb|EEM89828.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229265295|gb|ACQ46932.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
          Length = 209

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 149 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207


>gi|188585286|ref|YP_001916831.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349973|gb|ACB84243.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 215

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K+++L+ RE E L  I+ G T+ EIA  L IS  TV  +IA I  K     RS  + YA
Sbjct: 147 EKNYDLSDREKEVLQLIALGYTNKEIAEKLYISIKTVETHIARIKEKLGLNRRSELVRYA 206

Query: 241 VRNNIV 246
           +RNNI+
Sbjct: 207 MRNNII 212


>gi|261406817|ref|YP_003243058.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283280|gb|ACX65251.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 225

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 4/142 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    F              + Y     +   +  G+  +  +G  +      +  L   
Sbjct: 84  VLLTTFDVEQYVFDGIRAGASGYLLKDTETDELLSGIRAM-HRGATLFNSSTAKRALDQI 142

Query: 168 YQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             + M +      GKD     LT RE E L  ++ GK + EI+ IL IS  T   +I  I
Sbjct: 143 LTSGMQEPDSDSPGKDRLLGALTERETEVLQLLAYGKRNHEISAILCISEGTTKTHIHHI 202

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           M+K     R+ A+  A+R  +V
Sbjct: 203 MQKLGALDRTQAVVTAIRMKLV 224


>gi|89097699|ref|ZP_01170587.1| YhcZ [Bacillus sp. NRRL B-14911]
 gi|89087558|gb|EAR66671.1| YhcZ [Bacillus sp. NRRL B-14911]
          Length = 211

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 43/81 (53%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            ++  +   + D       ELT RE++ L  I++GK++ EIA  L I+  TV  ++++++
Sbjct: 131 TSHLLSHLSNKDKKKSPIDELTKRELDVLKEIAKGKSNKEIAASLFITEKTVKTHVSNLL 190

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R+ A   AVR  +V
Sbjct: 191 SKLEISDRTQAALLAVREKLV 211


>gi|294632015|ref|ZP_06710575.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292835348|gb|EFF93697.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 219

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 59/126 (46%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  +   ++   +A    G ++   +  + L  R     + AA           H 
Sbjct: 93  GLALSAADDIGAVRNALAGGVKGYVVTGTRTNVGLPARPGAAPIGAARLHRRPPGAPSHP 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A A
Sbjct: 153 GGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVA 212

Query: 241 VRNNIV 246
           +R  I+
Sbjct: 213 LRTGII 218


>gi|229592530|ref|YP_002874649.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229364396|emb|CAY52185.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 830

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           + I   RL   GLL+  +  M          D  L+ RE+E L  I+ G ++ EIA  L 
Sbjct: 737 QAIRELRLRSPGLLS--ELGMEPQASTPGAVDNPLSQRELEVLQLIALGNSNLEIADRLF 794

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IS +TV  +   I  K   + R+ A+A A    +
Sbjct: 795 ISLHTVKTHARRIHSKLGVERRTQAVAKAKALGL 828


>gi|226366304|ref|YP_002784087.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226244794|dbj|BAH55142.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 530

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 14/168 (8%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPK 150
               +  N L+    +       L  +  P   AG +          A    GL+   P 
Sbjct: 353 GRILRRVNGLESVVSVAMKHRERLDGSGFPRGIAGAELTAKDRLLAAAEAYQGLLEPRPH 412

Query: 151 GRII----LRDRLWEIGL--------LAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
              +      DRL E           +AA  A   +           LT REVE L  ++
Sbjct: 413 RPALDARGAADRLGEEARAGRLDAESVAAVLAAAGQRQSRRTPWPAGLTDREVEILRLVA 472

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G+++ EIA  L I+  T  N++  +  K     R+ A   A+   +V
Sbjct: 473 QGRSNKEIAAELFIAEKTARNHVERVYAKLGVNNRTQAGLAAIDRGLV 520


>gi|153007543|ref|YP_001368758.1| autoinducer-binding domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559431|gb|ABS12929.1| Autoinducer-binding domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 235

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 49/107 (45%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +R G  L   +  ++ R       LL            ++   +  LT RE E L W SE
Sbjct: 129 LRTGPALSSGEISMLRRQMQIAANLLHLSMYEHLDVPTMNCVSEVNLTMREREILRWTSE 188

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 189 GKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235


>gi|108762123|ref|YP_628591.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK
           1622]
 gi|108466003|gb|ABF91188.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK
           1622]
          Length = 209

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            LA  +A    S          LT RE E L  ++EG ++  IA  L IS +T   ++ +
Sbjct: 125 ALAELRATPRASLPAQATAPDALTPREREVLGLLAEGLSNKAIADRLDISEHTAKFHVNA 184

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K   + R+ A+  A +  +V
Sbjct: 185 VLAKLGVQRRTEAVVRAAKLGLV 207


>gi|21224963|ref|NP_630742.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3334798|emb|CAA19946.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
          Length = 222

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 7/175 (4%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V    P  L+  + +   D      +      C V      ++           +  F +
Sbjct: 44  VERYAPDVLLLDIRMPVMDGLDAARRVCARSACKVVMLTTFDLDEYVYEALYAGASGFLL 103

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------LTGREV 191
             +R   ++      +   D L    +     A++ +        D        LT REV
Sbjct: 104 KDVRRDDLVHAV-RVVAAGDSLLAPAVTRRLVADIVRRRREEAAADVTPQRLEVLTAREV 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G ++ EIA  L +S +TV  ++++++ K   + R  A+  A    +V
Sbjct: 163 ETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGLV 217


>gi|319762877|ref|YP_004126814.1| regulatory protein luxr [Alicycliphilus denitrificans BC]
 gi|330824956|ref|YP_004388259.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317117438|gb|ADU99926.1| regulatory protein LuxR [Alicycliphilus denitrificans BC]
 gi|329310328|gb|AEB84743.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 264

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H      T     ++ + S    V ++  G   + P     L  R       A ++  
Sbjct: 136 VLHAFELGATGYLVKNSWFGSYPQAVLQVANGGASITPHLARRLLQRFDRAAAPATHEQQ 195

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   +
Sbjct: 196 Q------DERETERLSQREKEVLRMVASGYTSAEIGTRLLISSLTVNTHIKNIYRKLQVR 249

Query: 232 TRSGAIAYAVRNNI 245
           TR+ A+ +A    +
Sbjct: 250 TRAQAVRFASLRGL 263


>gi|111022239|ref|YP_705211.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821769|gb|ABG97053.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 226

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP---FDL-VRCM 90
           R++ +D        +  +        F++V       +   ++V         DL ++ +
Sbjct: 7   RVLLVDDQELVRSGLRRILRR--KDGFVIVGECADGAEVPGAVVEHTPDVVLMDLRMKKV 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                 +      +P  +         E ++           L    A   I  +    +
Sbjct: 65  DGIRATRDLRSGAQPPPVLVLTTFDDDELLSGSLRAGAAGFILEDSPAEDLIRAVRTVAE 124

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G   L   +    +LA Y+  +  S D       ELT RE++ L  I  G ++ EI   L
Sbjct: 125 GGACLDPAVTGR-VLATYRT-VAPSSDGGRNHLTELTARELDVLALIGRGHSNSEIGREL 182

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GIS  TV +++  I  K   + R+ AI YA  + IV
Sbjct: 183 GISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGIV 218


>gi|56965136|ref|YP_176868.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911380|dbj|BAD65907.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 209

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 46/85 (54%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E  L A  Q  M  ++  +      LT RE+E L  +SEGKT+ +I+  L I+  TV  +
Sbjct: 122 ESVLDAKVQGQMISAFTANVPLHQALTKRELEILKLMSEGKTNQQISEELYITIKTVKTH 181

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
           ++ I+ K   + R+ A+ YA++  +
Sbjct: 182 VSHILAKLEVEDRTQAVIYALKEKL 206


>gi|27468487|ref|NP_765124.1| two-component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|57867340|ref|YP_188991.1| DNA-binding response regulator VraR [Staphylococcus epidermidis
           RP62A]
 gi|251809910|ref|ZP_04824383.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874566|ref|ZP_06283451.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367802|ref|ZP_06614451.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674015|sp|Q5HN50|VRAR_STAEQ RecName: Full=Response regulator protein vraR
 gi|81842704|sp|Q8CNP9|VRAR_STAES RecName: Full=Response regulator protein vraR
 gi|27316034|gb|AAO05168.1|AE016749_114 two-component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|57637998|gb|AAW54786.1| DNA-binding response regulator VraR [Staphylococcus epidermidis
           RP62A]
 gi|251806575|gb|EES59232.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296705|gb|EFA89214.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318141|gb|EFE58538.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726870|gb|EGG63328.1| response regulator protein VraR [Staphylococcus epidermidis VCU144]
 gi|329734717|gb|EGG71023.1| response regulator protein VraR [Staphylococcus epidermidis VCU045]
 gi|329734803|gb|EGG71108.1| response regulator protein VraR [Staphylococcus epidermidis VCU028]
          Length = 209

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 68/156 (43%), Gaps = 13/156 (8%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150
             +    + +   ++   +  +  E+      +D   + Y   T   + I   +   +  
Sbjct: 63  GVEATTEIKKDLPQIKVVMLTSFIEDKEVYRALDSGVDSYILKTTSASDIADAVRKTYEG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +   + L ++      +  M K  +++      LT RE+E L  I++G ++ EIA   
Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|89100435|ref|ZP_01173298.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89084864|gb|EAR64002.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 214

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M +          ELT RE+E L  I EG T+ EI+  L I   TV  ++++I+ K +  
Sbjct: 134 MGRLRGREKKPHEELTERELEVLLCIGEGMTNQEISNQLFIGIKTVKTHVSNILSKLSVS 193

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YA +N ++
Sbjct: 194 DRTQAAVYAHQNGLI 208


>gi|269219961|ref|ZP_06163815.1| two-component system response regulator [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269210597|gb|EEZ76937.1| two-component system response regulator [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 230

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 9/177 (5%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-------FCPVFHTLPENITPPAGMDNR 129
           +V +D     +R   +   +    +  +P              F      +       + 
Sbjct: 50  VVPADVILMDIRMPVMDGLEATATITSKPLPTGVSPKILILTTFEEEEYIMGAVQAGASG 109

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +        ++   +  +     +I      ++    A +A   ++ D H      LT R
Sbjct: 110 FLVKDAPPDQMLEAIRTIHRGDAVIGPSSTKKLVEKLAKEATAMRATDPHILD--GLTER 167

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  +++G T+ EIA  L ++  T+  +I  I  K   + R  A+  A    +V
Sbjct: 168 EIEVLKLVAQGLTNGEIAKTLTVAEATIKTHIGHIFYKLGARDRVQAVVLAYEAGLV 224


>gi|330897659|gb|EGH29078.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 240

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|322377077|ref|ZP_08051569.1| DNA-binding response regulator VraR [Streptococcus sp. M334]
 gi|321281790|gb|EFX58798.1| DNA-binding response regulator VraR [Streptococcus sp. M334]
          Length = 210

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 9/166 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  +V  + + E +     L    E          + +   + +DN       +    R 
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWHE------AKILIVTSYLDNEKIMPVLNAG-ARG 99

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEG 200
            ++       ++   R    G LA  Q    K   +  H     +LT RE + L  I++G
Sbjct: 100 YMLKTSSADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLIAKG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 160 YENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|163745782|ref|ZP_02153141.1| transcription regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380527|gb|EDQ04937.1| transcription regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 253

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDF 184
           D     +        +  +    K   +    L+++ L AA  A++      +    +DF
Sbjct: 125 DGISLKVHGPGGDSAVVGLGFAAKQARLSSIALYKL-LCAAQIAHLRYCALAESQSPRDF 183

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REVE L WI+ GK++  IA ILGIS +TV+  +  I  K     R+ A    +   
Sbjct: 184 GLSPREVEVLEWIATGKSNGVIAEILGISPHTVDTIVRRIFAKLDVNDRTTAAIRGLGAG 243

Query: 245 IV 246
           ++
Sbjct: 244 LL 245


>gi|257056663|ref|YP_003134495.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256586535|gb|ACU97668.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 239

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  + +         PT++         + +            L  
Sbjct: 68  DVVLMDVQMPKLDGLEATRRLLGPAGADHPTKVIILTTFDREDYLFEALRAGASGFLLKN 127

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                 I  + +  +G  +L   +    ++A + A           +  ELT RE E L+
Sbjct: 128 ASPEDLIESVRIVARGDALLSPEVTRR-VIARFSAPAVTGP---TRRPSELTDREFEVLS 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G ++ EIA  L +   TV  +++ I+ K   + R+ A+ +A  N IV
Sbjct: 184 LLAKGASNAEIARQLVLGETTVKTHVSRILTKLNLRDRTHAVVFAYENGIV 234


>gi|256376857|ref|YP_003100517.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921160|gb|ACU36671.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 227

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 72/215 (33%), Gaps = 1/215 (0%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+     +       +      E VG +       +L  E   D +V  D    ++  + 
Sbjct: 9   LVDDQALVRAGFRVILGAEPDIEVVGEAGDGERAVELVAELAPD-VVLMDVQMPVLDGIE 67

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            + +       + P  +         + +            L        +  + +  +G
Sbjct: 68  ATRRILGPAPAEHPVRVVVLTTFDREDYLFEALRAGASGFLLKNASPEDLVEAIRVVARG 127

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             +L   +    L          +      +  +LT RE E L  ++ G ++ EIA  L 
Sbjct: 128 DALLSPEVTRRVLARFAGPAPRAAPATAPNRPADLTDREYEVLVHLARGSSNAEIAARLH 187

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   TV  +++ ++ K   + R+ A+ YA  + +V
Sbjct: 188 LGETTVKTHVSRVLAKLGLRDRTHAVVYAYEHGVV 222


>gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
          Length = 222

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 F+LT REV+ L W++ GKT+ +IA IL +S  TVN ++  I  K   +TR+ A 
Sbjct: 153 TRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAAT 212

Query: 238 AYAV 241
           + A+
Sbjct: 213 SVAL 216


>gi|121053812|gb|ABM47010.1| response regulator [Amycolatopsis orientalis]
          Length = 222

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 2/154 (1%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLMLLFPKGR 152
             +    + +R  E+   V  T  ++      ++      LT    +  IG  +      
Sbjct: 68  GVEATRRIKERHPEIEIVVLTTYADDDWVLRALEAGALGYLTKSANKHEIGRAVHAAAAG 127

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
             L D   +  +L A   +   S       D  LT RE   LT I+ G ++ EIA  L +
Sbjct: 128 QALLDPQVQRRVLGAALTSAPASAPPPED-DANLTKREAHVLTLIAAGHSNKEIAAELFV 186

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV ++I  I  KT ++ R+ A+ YA +   V
Sbjct: 187 SETTVKSHINRIFAKTGSRDRAQAVRYAYQAGYV 220


>gi|320160284|ref|YP_004173508.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994137|dbj|BAJ62908.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 216

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 12/170 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D      +      R   +    FH               Y      
Sbjct: 50  PDVILMDLIMPEMDGVEATQRVRQISPRTQVIVLTSFHEDTHIFPAIKAGALSYLLKDVS 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +        ++         + A     M  +          LT RE E L  
Sbjct: 110 AEELGEAIRAAARGEAVL------HPQVAARLVKEMRGTPAEKPNPYTALTEREQEVLKC 163

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G ++ EIA  L +S  TV  ++++I+ K     R+ A  YA +  ++
Sbjct: 164 IAQGMSNAEIAAHLVVSEKTVKGHVSNILSKLHLADRTQAAIYAWKEGLI 213


>gi|197344641|gb|ACH69671.1| LuxR family transcriptional regulator [uncultured proteobacterium]
          Length = 277

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 18/215 (8%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
                   TE +G  HF         +    +++   +P +  +  +  E      V   
Sbjct: 23  LARDFQRCTEALGFRHFACCSHVDPLKPPRRAVMLHSYPKEWAQLFSELELFDIDPVFLH 82

Query: 105 PTELFCPVF---HTLPENITPPA----------GMDNRY--CSLTFDVARIRIGLMLLFP 149
            +    P F       + ++PP           G+   Y     + D  R       + P
Sbjct: 83  ASRSLVPFFWDTEAFNDELSPPQQELFNEAGRYGLTRGYTVPIHSVDAPRDFRASCSVVP 142

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEI 206
               +       + L+A Y  +                 L+ RE +CL   ++GK+    
Sbjct: 143 DSESLEPAAYQAVQLMAFYLYDTASKDAQQKDPPPVQQPLSRRERQCLELAAQGKSDWVS 202

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + ILG+S  TV+N++ +  R+    TR  A+ +A+
Sbjct: 203 SRILGLSERTVHNHVENAKRRLQVATRMQAVMHAL 237


>gi|166798333|gb|ABY89695.1| transcriptional regulator [Mesorhizobium loti]
          Length = 241

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 14/181 (7%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           SH+L  +++   +  ++    S+ PF             +  + +R  +LF         
Sbjct: 62  SHYLRHQYERI-DPVIERARCSECPFQW------GRGFGHAGISKREQQLFDEAAEFGIC 114

Query: 119 NITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                  +D R    ++TF   R+    M +  +    L     EI     +     K  
Sbjct: 115 CGLTIPLVDRRGGVAAMTFAADRLDPSFMRIAEQYEQAL-----EIMATCFHIGVRRKLS 169

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE ECL W ++GK++ EI  ILGI   T   ++ +  +K   +T++ A
Sbjct: 170 GGLAVDGVSLTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQA 229

Query: 237 I 237
           +
Sbjct: 230 V 230


>gi|307141914|gb|ADN34749.1| transcriptional activator CmrR [Pseudomonas sp. CMR12a]
          Length = 235

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 16/183 (8%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP--------AGMDN 128
           ++ +++P    R            ++ +  +   P+      +   P        AG+  
Sbjct: 51  VMFNNYPRQWQRRYDTENYLAIDPIVAQGRQSQTPIIWADSVSREAPIFWEEARAAGLKV 110

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRL--WEIGL-----LAAYQANMFKSYDVHWG 181
            +   + + A     ++ L    + I R  L   EI +     +A    +   S  +   
Sbjct: 111 GWSQSSINAA-GAASMLSLSRSSQPITRQELDANEIKMRWLVNVAHLALSNRISTRLANP 169

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + +LT RE E L W   GKTS EI+ +L IS NTVN +I + + K +   ++ A+  A 
Sbjct: 170 YEVKLTSREKEVLKWTGSGKTSFEISCLLAISENTVNFHIKNSILKLSAANKTAAVIQAF 229

Query: 242 RNN 244
              
Sbjct: 230 LTG 232


>gi|295695123|ref|YP_003588361.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295410725|gb|ADG05217.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 216

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  I+ G+++ EIA  L IS NTV N++ +IM K   K R+   A AVR
Sbjct: 153 LTPREREILGLIARGRSNREIAQALTISENTVKNHLKNIMAKLDVKNRAQLAALAVR 209


>gi|256396690|ref|YP_003118254.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362916|gb|ACU76413.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 225

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  ++ G+ + EIA  L I+ NTV N++ +I+ K    +R  A+ YAVR  
Sbjct: 161 KLTDREMEVLKLVATGRNNREIAKELFITENTVKNHVRNILEKLNLHSRMEAVVYAVREK 220

Query: 245 IV 246
           ++
Sbjct: 221 LL 222


>gi|167837236|ref|ZP_02464119.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 237

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           R+  +   A           +    +  LT REVE L W ++GKTS EI+ IL IS +TV
Sbjct: 148 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 207

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N ++ + + K  T  ++ A+  A    ++
Sbjct: 208 NFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|167739431|ref|ZP_02412205.1| LuxR family regulatory protein [Burkholderia pseudomallei 14]
 gi|167911761|ref|ZP_02498852.1| LuxR family regulatory protein [Burkholderia pseudomallei 112]
 gi|254191335|ref|ZP_04897839.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157939007|gb|EDO94677.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 237

 Score = 99.7 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           R+  +   A           +    +  LT REVE L W ++GKTS EI+ IL IS +TV
Sbjct: 148 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 207

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N ++ + + K  T  ++ A+  A    ++
Sbjct: 208 NFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|270293338|ref|ZP_06199547.1| DNA-binding response regulator VraR [Streptococcus sp. M143]
 gi|270278187|gb|EFA24035.1| DNA-binding response regulator VraR [Streptococcus sp. M143]
          Length = 210

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136
           P  +V  + + E +     L    +RP      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKERPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       ELT RE + L  
Sbjct: 107 ADELLHAVRKVAAGELAIEQ----EVSKKVEYHRNHIELHE-------ELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|299822491|ref|ZP_07054377.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299816020|gb|EFI83258.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 212

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 170 ANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             M +       K+   ELT RE E L  I+EGK + EIA  L I+  TV  ++++I+ K
Sbjct: 131 GKMMQRLTAKPEKNLHDELTNRENEILLLIAEGKANQEIADELYITLKTVKTHVSNILSK 190

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+ A  YA ++++V
Sbjct: 191 LDVQDRTQAAIYAFQHDLV 209


>gi|119492591|ref|ZP_01623809.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119453060|gb|EAW34230.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 211

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 74/214 (34%), Gaps = 36/214 (16%)

Query: 62  LLVRWDLFQEQKLDSIVSSDW-----------------------PFDLVRCMALSEKDK- 97
           L+V  D   +  L+  V SDW                       P  ++  + L   D  
Sbjct: 4   LIVEDDPMMQLGLE-QVLSDWADIDLIGIAEDGYLGVETALNQKPDLILMDIGLPRMDGI 62

Query: 98  --YYNVLQRPTELFCPVFHT---LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                + +   E+   +  +     E I   +   + YC     V R+R  +        
Sbjct: 63  EATQKIKEALPEIRVVMLTSHTAETEVIAALSSGADAYCIKGASVDRLRAAITAASEGAT 122

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +      +  +      ++         K   L+ RE E L  + EGKT+ +IA  L +
Sbjct: 123 YL------DPQVAKCVINHLQPPTPQSDLKSTNLSPREFEVLKLMVEGKTNVKIAEELYL 176

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S NT+  ++  IM K +   R  A   A+R  +V
Sbjct: 177 SPNTIKTHVRGIMNKLSVDDRVQAAVTALRLGLV 210


>gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 222

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 F+LT REV+ L W++ GKT+ +IA IL +S  TVN ++  I  K   +TR+ A 
Sbjct: 153 TRLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAAT 212

Query: 238 AYAV 241
           + A+
Sbjct: 213 SVAL 216


>gi|323489447|ref|ZP_08094676.1| two-component response regulator-like protein [Planococcus
           donghaensis MPA1U2]
 gi|323396941|gb|EGA89758.1| two-component response regulator-like protein [Planococcus
           donghaensis MPA1U2]
          Length = 213

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 13/165 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARI 140
            DLV  + +        + ++   +   +  +  +              Y     +   +
Sbjct: 53  MDLVMPV-MDGIQATRLIKEQFPHIIVLMLTSFSDQDHVVPAIEAGAAGYQLKDIEPDEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L  L      +      E+         +    +       +LT RE E L  +++G
Sbjct: 112 VASLRSLMRGENTLHPKASSEL---------LKAPAEPAPHTINQLTPREQEVLAELTKG 162

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           K++ EIA  L ++  TV  +I++I  K A + R+ A  YAV++ +
Sbjct: 163 KSNREIASALFVTEKTVKTHISNIFIKLAVQDRTQAALYAVKHGL 207


>gi|239834457|ref|ZP_04682785.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301]
 gi|239822520|gb|EEQ94089.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301]
          Length = 260

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 9/144 (6%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-------GRIILRDRLWEI 162
           CP    + ++     G+ N + +++    +  +G  L   +        + + + R   +
Sbjct: 110 CPAVADMLQDAEK-HGLGNIFIAVSARGQKGAVGCSLFSFEISPDEDREQFVAKLRPRLL 168

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L     + +    DV       LT REV+CL W + GKT  EIA IL I+R TV  Y+ 
Sbjct: 169 SLSGIIHSALCGCKDVATVSSL-LTPREVDCLRWAANGKTDGEIAEILNIARWTVVTYLQ 227

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +   K     R+ A+A A+   I+
Sbjct: 228 NAKIKLNCSNRTSAVATALSLGII 251


>gi|167574776|ref|ZP_02367650.1| response regulator receiver protein [Burkholderia oklahomensis
           C6786]
          Length = 345

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 40/64 (62%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              + F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR+GA A
Sbjct: 277 ALAERFGLTMREAEVLLWVSHGKTNRDIGDILGITPRTVNKHLEHLFRKLHVETRAGATA 336

Query: 239 YAVR 242
            A++
Sbjct: 337 AAIK 340


>gi|83720643|ref|YP_442349.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83654468|gb|ABC38531.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 241

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 140 IRIGLMLLFPKGRIILRD-------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
             +G++ L      +          R+  +   A           +    +  LT REVE
Sbjct: 127 GGMGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVE 186

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A    ++
Sbjct: 187 VLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 240


>gi|312623477|ref|YP_004025090.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203944|gb|ADQ47271.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 211

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           +R   +   +  +N+  +   +   +  T  E       +    + Y   + D   I   
Sbjct: 56  IRMPVMDGIEGTFNIKTKFPNVKVIILTTFCEEDYIEKSLSFGADGYILKSSDAKHIVNS 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKT 202
           ++ +     ++ ++       +A Y +++ K     ++ K   LT RE+E    IS+G +
Sbjct: 116 ILSVLDGKVVMDKE-------IALYISDVLKRTSKQYFEKTQNLTERELEIAKLISQGYS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + EIA +L IS  TV NYI SI++K   K R+    Y
Sbjct: 169 NKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|228476314|ref|ZP_04061015.1| response regulator protein VraR [Staphylococcus hominis SK119]
 gi|314936061|ref|ZP_07843410.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269597|gb|EEK11103.1| response regulator protein VraR [Staphylococcus hominis SK119]
 gi|313655878|gb|EFS19621.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 209

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 68/159 (42%), Gaps = 13/159 (8%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
            +   +    + +    +   +  +  E+      +D   + Y   T   + I   +   
Sbjct: 60  DMDGVEATTQIKKDLPHIKVVMLTSFIEDKEVYRALDAGVDSYILKTTSASDIAEAVRKT 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +    +   + L ++      +  M K  +++      LT RE+E L  I++G ++ EIA
Sbjct: 120 YRGESVFEPEVLVKM------RNRMKKKAELYE----MLTEREMEILLLIAKGYSNQEIA 169

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 170 SASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|307154613|ref|YP_003889997.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984841|gb|ADN16722.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 211

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 12/160 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +R   +   D    +  +  +    VF T   +     G+ +      F  A        
Sbjct: 62  LRMPIMEGADAIAAIRAKFKQARIIVFSTYDGDENIYRGLRSGAKGYIFKGAEPH----E 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R + + + +    +AA  A    S          L+ RE+E L  I++GK++ EI
Sbjct: 118 LLKAIRTVHKGQKYIPPNIAAKLAERLGSS--------PLSNRELEVLRLIAKGKSNSEI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L I+ +TV  ++ +I  K     R+ A+  A+   IV
Sbjct: 170 SQDLSIAESTVRFHLKNIFSKLDVGDRTQALVTALNRGIV 209


>gi|298241349|ref|ZP_06965156.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554403|gb|EFH88267.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 5/185 (2%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPP 123
           D     +   +V +  P  ++  + +   D       + ++   +   +  T  E+    
Sbjct: 39  DAADGAEAVRVVEALQPDVVLMDLRMPGMDGLEAITQIQEQWPHIAVIILTTYDEDDLML 98

Query: 124 AGMDNRYC--SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            G+    C   L           +    +G I L+  +    L+    A           
Sbjct: 99  RGLRAGACGYLLKDTDRETLFHAIRTAARGDIFLQPEVMARILVRTTDAFHPTPSRSQAE 158

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + ELT RE + L  ++ G+ S EIA  LGIS  TV +++ SI  K    +R+ A+A  +
Sbjct: 159 GESELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGI 218

Query: 242 RNNIV 246
           +  ++
Sbjct: 219 KRGLL 223


>gi|156740169|ref|YP_001430298.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM
           13941]
 gi|156231497|gb|ABU56280.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii
           DSM 13941]
          Length = 454

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  ++ G T+ +IA  L IS NTV  ++ +I  K    +R+ A  YAVR+ 
Sbjct: 8   QLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYAVRSG 67

Query: 245 IV 246
           IV
Sbjct: 68  IV 69


>gi|163848177|ref|YP_001636221.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526082|ref|YP_002570553.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163669466|gb|ABY35832.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449961|gb|ACM54227.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 236

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 6/180 (3%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+    +V  D     +  + ++   K      R   +   V+    +           +
Sbjct: 49  ERLFPDVVLVDINLPGLNGLEVARVIKRREP--RTGIIVLSVYEDEEQLFQAIKVGAAAF 106

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA--YQANMFKSYDVHWGKDF--EL 186
            S       +   +  +     +I    L    + A   +Q     + D   G      L
Sbjct: 107 TSKDISPEELVHMIREVARGRYLINDAVLAHPNVAARVLHQFRELAATDEEDGASLFAPL 166

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+  A++   +
Sbjct: 167 TSREIEILDCIARGLSNKEIASELSISSQTVKNHITSILAKLQVNDRTMAVIVAIKKGWI 226


>gi|206971450|ref|ZP_03232400.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
 gi|206733435|gb|EDZ50607.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
          Length = 213

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|315647611|ref|ZP_07900713.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315277050|gb|EFU40391.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 218

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 14/192 (7%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHT 115
           S F +V      E+ L+ +     P  ++  + +      +    V  +   +   +   
Sbjct: 29  STFEVVAEGQSGEEALE-LTEKWMPDIILMDIQMPGMGGLEATKQVKDKFPYVKIVMVTV 87

Query: 116 LPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
             +       +      Y     +       L  +      + R+       LA      
Sbjct: 88  SDDIAHLFDALKRGAQGYLLKNLNPESWHEYLKAIAVDEAPMSRE-------LAFRILKE 140

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F   +     +  LT RE E L  ++EG ++ +I+V L IS NTV N++ +I++K   + 
Sbjct: 141 FSQQEKPDPGNSPLTAREREILGRVAEGLSNRDISVALCISENTVKNHLKNILQKLHLEN 200

Query: 233 RSGAIAYAVRNN 244
           R     YA    
Sbjct: 201 RVQLTRYAFEQG 212


>gi|167567698|ref|ZP_02360614.1| response regulator receiver protein [Burkholderia oklahomensis
           EO147]
          Length = 347

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 40/64 (62%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              + F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR+GA A
Sbjct: 279 ALAERFGLTMREAEVLLWVSHGKTNRDIGDILGITPRTVNKHLEHLFRKLHVETRAGATA 338

Query: 239 YAVR 242
            A++
Sbjct: 339 AAIK 342


>gi|167563421|ref|ZP_02356337.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
 gi|167570595|ref|ZP_02363469.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 237

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           R+  +   A           +    +  LT REVE L W ++GKTS EI+ IL IS +TV
Sbjct: 148 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 207

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N ++ + + K  T  ++ A+  A    ++
Sbjct: 208 NFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|157683240|gb|ABV64383.1| response regulator [Anabaena sp. L-31]
          Length = 228

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 15/206 (7%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV------RCMALSEKDKYYNVL 102
           +  L +  G     ++      E  LD I     P D+V        +   E  K     
Sbjct: 22  LVRLQQETGLE---IIAEAEDGETALDFI--KQQPVDVVLLDVGLPGLGGIETCKQIKQQ 76

Query: 103 QRPTELFCPVFHTLPENIT-PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
                +     H+    I+         YC       ++ + L  +             E
Sbjct: 77  NPQLPILILTSHSQKPLISKLIEAGAQGYCLKGIVAEKLVLALRSVAAGASWWDETATRE 136

Query: 162 I-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           I   +AA Q+    S +     D  LTGRE+E L+ +++GKT+ EIA  L I+  TV  +
Sbjct: 137 IRSSIAASQSQ--PSTENLIKSDHPLTGRELEILSLLAQGKTNQEIATALYITPGTVRVH 194

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I+ K     R  A+  A++  ++
Sbjct: 195 VHAILHKLDVSDRHQAVVLALQKRLI 220


>gi|220921758|ref|YP_002497059.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219946364|gb|ACL56756.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 244

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 17/234 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS---IVSSDWPFDL 86
            +LL  +       +   ++      VG  H LL    +      D    +    +P + 
Sbjct: 10  RELLQSIHRTATPENVRDQLLKKLAGVGVEHVLLATLRICDAVPCDRRPTVFIGTYPDEW 69

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R         +  V++   E       T P+ I        R      +        + 
Sbjct: 70  ARRYYARNYILHDPVVRGVAERASGFAWTDPDLIASDDREARRVLDEAGEFGLHEGFTLP 129

Query: 147 LF------------PKGRIILRDRLWEIGLLAAYQAN--MFKSYDVHWGKDFELTGREVE 192
           L              +   +       + L+  Y     +  +          L+ RE E
Sbjct: 130 LLTLEGDTAGVSFVGERLDLSPAVRGMLTLVGTYALGQVLLLANGQAEALSEPLSPRERE 189

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W ++GK+  EI   +GIS +    ++ ++ RK  T +R+ A+A  +R  I+
Sbjct: 190 SLQWAADGKSDWEIGEAMGISEHGAIRHLRAVRRKLGTTSRAHAVALGLRLGII 243


>gi|307324713|ref|ZP_07603919.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889595|gb|EFN20575.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 225

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 3/147 (2%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V+ RP  L    F              + +       A +   + ++     ++      
Sbjct: 77  VIHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRVVAAGEALLAPSVTR 136

Query: 161 EIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              L+A +         D    +   LT RE E L  I+ G ++ EIA  L ++  TV  
Sbjct: 137 R--LIADFARQRPAPRRDGPSARRSGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKT 194

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I  ++ K   + R+ A+ +A  + +V
Sbjct: 195 HIGRVLAKLGLRDRAQAVIFAYESGLV 221


>gi|298243753|ref|ZP_06967560.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297556807|gb|EFH90671.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 221

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 104 RPTELFCPVFHTLPENITPPAGM-----DNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           RP  +   V   + + I+  A +     ++R   L+  V R  +   +       +L+D 
Sbjct: 47  RPAVVLMDVMMPVLDGISATASLRHCCPESRVIILSNHVERSTVIHAVKAGAVGYLLKDA 106

Query: 159 LWEI-----------GLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEI 206
           L E             +  A QA++F  ++V        LT RE + L  +++G+++ +I
Sbjct: 107 LAEELCHAIKEVVQGNVHFAPQASIFLLHEVREPNLPENLTEREADVLRLLAQGRSNKDI 166

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L I  +TV  ++  I+ K   ++R+ A  YA R N+V
Sbjct: 167 ARHLHIVEDTVKTHVRHILSKLGVQSRTQAALYATRLNLV 206


>gi|15614776|ref|NP_243079.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174832|dbj|BAB05932.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 217

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           ML      +   +      +       M         +  +LT RE + L  +++G+++ 
Sbjct: 111 MLAETIRAVCSGESRLHPKVTKHVLTRMNGDESEEEKRLRDLTNREKDVLRELAKGQSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L IS  TV  ++++I  K     R+ A  +A++  I
Sbjct: 171 EIASELHISEKTVKTHVSNIFWKLDVHDRTQAALFAIKYGI 211


>gi|124268769|ref|YP_001022773.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124261544|gb|ABM96538.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 306

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN----ITPPAGMDNRYCSLTFDVARIRI 142
           V  + +   D +  +  R  +    +    P+     I P      R   +   +A  R+
Sbjct: 147 VAGLGVLLVDAHGRIAWRSPQAERWLAACGPDGPGNVIAPAEAGTERVFQMPGPLAPQRL 206

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L  L P G   + + +W + +     ++   S          LT RE E L+W+++GKT
Sbjct: 207 TLRSLGPAG---MGETMWLLEVQRGDGSDGAASPSRLSAA--ALTPRETEVLSWLAKGKT 261

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           + +I  ILG+S  TVN ++  I  K   +TR
Sbjct: 262 NRDIGDILGVSPRTVNKHLEHIFEKLGVETR 292


>gi|271963284|ref|YP_003337480.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506459|gb|ACZ84737.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 2/144 (1%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +RP  L    F              + +       + +   +  +     ++        
Sbjct: 70  ERPRVLILTTFDLDDYAFAALKAGASGFLLKDVPPSDLISAIHSVHSGDAVVAPSTTRR- 128

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            LL  +  ++     V       LT RE E L  ++ G ++ EIA  L ++  TV  ++ 
Sbjct: 129 -LLERFAVHLPSPGVVEQAALGGLTAREREVLVLVARGLSNMEIADRLDLAEATVKTHLG 187

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ K   + R+  + YA  + +V
Sbjct: 188 RVLAKLGLRDRAQVVVYAYESGLV 211


>gi|163940056|ref|YP_001644940.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862253|gb|ABY43312.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 213

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 10/213 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+     +   + + ++     E +G +          Q ++ D +V  D     +  + 
Sbjct: 7   LVEDHHIVRRGLVFFLKTREEFEIIGEAANGEEALTFVQTERPD-VVLMDLSMPKMDGIE 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +++ K Y+   +   L    F      +       + Y        ++   ++ ++   
Sbjct: 66  ATKRIKQYDETIKI--LMLSSFSEQDYVLPALEAGADGYQLKEVQPDQLVASIVAVYQGN 123

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                       LL        K           LT RE E L  I++G+++ EIA  L 
Sbjct: 124 ANFHPK--VTPALLGRSAVKKEKENPFSM-----LTKREQEVLREIAKGRSNKEIAAELH 176

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|242241722|ref|ZP_04796167.1| response regulator [Staphylococcus epidermidis W23144]
 gi|242234812|gb|EES37123.1| response regulator [Staphylococcus epidermidis W23144]
          Length = 209

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 68/156 (43%), Gaps = 13/156 (8%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150
             +    + +   ++   +  +  E+      +D   + Y   T   + I   +   +  
Sbjct: 63  GVEATTEIKKDLPQIKVVMLTSFIEDKEVYRALDSGVDSYILKTTSASDIADAVRKTYEG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +   + L ++      +  M K  +++      LT RE+E L  I++G ++ EIA   
Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|229172958|ref|ZP_04300510.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228610478|gb|EEK67748.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 215

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 10/213 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+     +   + + ++     E VG +          Q ++ D +V  D     +  + 
Sbjct: 7   LVEDHHIVRRGLVFFLKTREEFEIVGEAENGEEALTFIQTERPD-VVLMDLSMPKMDGIE 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +++ K Y+   +   L    F      +       + Y        ++   ++ +    
Sbjct: 66  ATKRIKQYDETIKI--LILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAVHEGN 123

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                       L         K           LT RE E L  I++G+++ EIA  L 
Sbjct: 124 ANFHPK--VTPALFGRSAVKKEKENPFSM-----LTKREQEVLREIAKGRSNKEIAAELH 176

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|149182664|ref|ZP_01861132.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849633|gb|EDL63815.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 216

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A    N F+  +    +D  LT RE+E L  + EG T+ EI+  L I   T   ++++I
Sbjct: 131 VADKMMNRFRPQERKLHED--LTTRELEVLKCLGEGMTNQEISDELFIGVKTTKTHVSNI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K     R+ A  YA RN I+
Sbjct: 189 LSKLGVADRTQAAIYANRNGIL 210


>gi|332525929|ref|ZP_08402070.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109480|gb|EGJ10403.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 242

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 22/234 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS--SDWPFDLVRCM 90
              +       ++  R+ +  + +     ++    + +     S+VS  S+ P D     
Sbjct: 11  FLDIGTASDHATFKSRLVSFAQNLDFQ--IVQAVLMIKRPSQPSVVSRLSNLPSDFAEAS 68

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG----MDNRY-----CSLTFDVARIR 141
                 +   VLQR      P  +     +   AG       RY      S++  +   R
Sbjct: 69  MDEADSRRDPVLQRLRTASVPFVYDQTTYVEAGAGDLWETQARYGFRTGISMSLHMPGGR 128

Query: 142 IGLMLLFPKGRIILRDR-----LWEIGLLAAYQ----ANMFKSYDVHWGKDFELTGREVE 192
             L  +  +  +   +R     + ++ LLA +     A +         K  +LT RE E
Sbjct: 129 QFLFGVDREQALPADERELMRLMADLQLLAVHAQETAARVMMPKLDSLPKRPKLTPRERE 188

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W  EGK++  I  IL +S +TV  ++ + M K    ++  A+  A+   ++
Sbjct: 189 VLQWTREGKSAWAIGQILSMSEHTVVFHLRNAMTKLEVSSKHSAVLKAMEIGLL 242


>gi|325277395|ref|ZP_08143015.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097468|gb|EGB95694.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 242

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVR 88
            +   +            +      +G   F+L       +  +D +  V  DW  D  +
Sbjct: 11  QVALAVERATTLAGVQDALRPFAMRLGYDRFVLFSVRAVADALIDRVYWVEGDWWGD-GQ 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPEN--------ITPPAGMDNRYCSLTFDVARI 140
            +          V +   E   P F T   +        +  PAG       L     + 
Sbjct: 70  AIDARTYLTRCPVTRHVLEARAPFFWTKTCDEKGERYRVVRRPAGAGVHGLQLPVFGPQG 129

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWIS 198
             G M L         +    + ++A    +  +            +L+ RE E L W +
Sbjct: 130 LEGAMSLGGARIDSSPEARLMLAMVATAAFHTARRLLQPPLAASATQLSAREREVLRWTA 189

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            G    +IA  LG+S  TV N++ +  R+    T + AI  A+ N 
Sbjct: 190 AGSRQADIAATLGLSERTVENHLRAARRRLGVATTAQAIKIALHNG 235


>gi|225181500|ref|ZP_03734942.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167748|gb|EEG76557.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 212

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 16/132 (12%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  T+          +     L   +  +  G  +L P    IL D +            
Sbjct: 93  VTETIKAGADGYLLKNVESEELINTIQAVHKGQSVLDPSVTEILFDNIKS---------- 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     K+  LT +EV+ L  IS GK + EIA I+ IS  TV NY+++I++K    
Sbjct: 143 ------QQPKKEHNLTPKEVQILDMISVGKANKEIAEIMKISDKTVRNYVSNILQKLNVS 196

Query: 232 TRSGAIAYAVRN 243
            R+ A +Y +RN
Sbjct: 197 NRTEAASYWMRN 208


>gi|13488404|ref|NP_109411.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14028158|dbj|BAB54750.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 242

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD-WPFDLVRCMA 91
           + ++       +         E  G  +FL+    +         + +D W  +      
Sbjct: 13  ITKIDTARSADAILQEFRFTMERYGLHNFLITGLPVPHGTDWQREILADGWSPEWHHRYV 72

Query: 92  LSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNRYCSLTFDVARIR---IGLMLL 147
                 +   + +      P  +  LP     P        +  F +       I + L 
Sbjct: 73  TEAYFLHDPCVAQCRHSPEPFRWGELPVARLVPRAKLVMDEAAEFGMKEGICIPIHVPLA 132

Query: 148 FPKGRIILRDRLW----EIGLLAAYQANMFKSYDV-----HWGKDFELTGREVECLTWIS 198
            P    +  DR+      + L+     + F+S           +   LT RE E L W +
Sbjct: 133 GPGVVTMASDRMEVPPSAMPLIETLCVHTFRSLSALGTPGDGNEPTPLTARERELLEWSA 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +GK++D+IA ILG++RNTV ++  +I  K      + AI  A+R 
Sbjct: 193 QGKSTDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRR 237


>gi|332202293|gb|EGJ16362.1| response regulator [Streptococcus pneumoniae GA41317]
          Length = 210

 Score = 99.3 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       ELT RE + L  
Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|322374884|ref|ZP_08049398.1| DNA-binding response regulator VraR [Streptococcus sp. C300]
 gi|321280384|gb|EFX57423.1| DNA-binding response regulator VraR [Streptococcus sp. C300]
          Length = 210

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       +LT RE + L  
Sbjct: 107 ADELLHAVRKVASGELAIEQ----EVSKKVEYHRNHIELHE-------DLTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|323488502|ref|ZP_08093746.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2]
 gi|323397719|gb|EGA90521.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2]
          Length = 211

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y         +   +  +     +I      ++  +   + N          +
Sbjct: 94  IREGADGYLLKDSPSKDVIDAIRTVAGGESVIPPGMTKKLLSMHKQENNQ---------E 144

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  + EG ++ +IA  L IS  TV  ++++I +K   K+RS AI +AV+
Sbjct: 145 DKTLTPREMEVLLVLVEGLSNKDIATRLYISDKTVKIHVSNIFKKFDVKSRSQAIIFAVQ 204

Query: 243 NNIV 246
           NN+V
Sbjct: 205 NNLV 208


>gi|289168573|ref|YP_003446842.1| response regulator [Streptococcus mitis B6]
 gi|288908140|emb|CBJ22981.1| response regulator [Streptococcus mitis B6]
          Length = 210

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       +LT RE + L  
Sbjct: 107 ADELLHAVRKVAAGKLAIEQ----EVSKKVEYHRNHIELHE-------DLTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|29828980|ref|NP_823614.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606085|dbj|BAC70149.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L          D     +   V  +  G   L P  +  L +RL E       +   
Sbjct: 99  FPALRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSIQRRLLERLSEP------ERGQ 152

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S +V  G    LT RE E L  I+EG ++ EIA  L +S  TV  +I ++  KT  K 
Sbjct: 153 AASSEVPDG----LTAREAEVLVLIAEGLSNHEIARRLHVSTATVKTHINNLFAKTGLKD 208

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA    +V
Sbjct: 209 RAQAVRYAYGKGLV 222


>gi|229167101|ref|ZP_04294844.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228616335|gb|EEK73417.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 211

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 76/213 (35%), Gaps = 10/213 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+     +   + + ++     E +G +          Q ++ D +V  D     +  + 
Sbjct: 7   LVEDHHIVRRGLVFFLKTREEFEIIGEAANGEEALTFVQTERPD-VVLMDLSMPKMDGIE 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            ++  K Y+   +   L    F      +       + Y        ++   ++ ++   
Sbjct: 66  ATKLIKQYDETIKI--LMLSSFSEQDYVLPALEAGADGYQLKEVQPDQLVASIVAVYQGN 123

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                       LL        K           LT RE E L  I++G+++ EIA  L 
Sbjct: 124 ANFHPK--VTPALLGRSAVKKEKENPFSM-----LTKREQEVLREIAKGRSNKEIAAELH 176

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|229178632|ref|ZP_04305996.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228604790|gb|EEK62247.1| DNA-binding response regulator [Bacillus cereus 172560W]
          Length = 192

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 130 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188


>gi|269926224|ref|YP_003322847.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789884|gb|ACZ42025.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 218

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 9/159 (5%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLLF 148
           +   +    +     E+   V     E            + Y     D  R    L+   
Sbjct: 58  MDGIEATKLISAELPEIKVVVLTASEEEEDLFEAIRSGASGYIIKNIDPDRF-FELLEAA 116

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT-SDEIA 207
            +G   L   L    L    Q       +     D ELT RE E L  + +G T + EIA
Sbjct: 117 YQGEPALPPNLARKVL----QEFAQPKIERKKRPDAELTDREREILELLVQGITSNKEIA 172

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S +TV  ++ +I+ K   + R+  +AYA+++ ++
Sbjct: 173 ERLFLSESTVKYHLHNILNKLHLQNRAQVVAYALQHGLI 211


>gi|229916670|ref|YP_002885316.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
 gi|229468099|gb|ACQ69871.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 39/59 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ REVE L  +++G+++ +I+ +L IS  TV N+++S++RK     R+ A+  A+R  
Sbjct: 168 LSRREVEVLHLLADGRSNRDISDMLFISEKTVKNHVSSVLRKMDVNDRTQAVVDAIRRG 226


>gi|172064983|ref|YP_001815695.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997225|gb|ACB68142.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 239

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  LLA +  +         +      +G  ++  V        +   +  S++P     
Sbjct: 5   RESLLASLEQVKTASEAFDNLAPAVRALGFEYYAYVLRITIPITRPAIMGWSNYPEAWRT 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF------DVARIRI 142
                +      VL        P+    P         D     L +         R  +
Sbjct: 65  HYTQRDYQHADPVLHYGQACTRPMPWPGPLPGYDAFWRDAAAFGLCYGWSQTTRDHRGAM 124

Query: 143 GLMLLFPKGRIILRDRLWEIG-------LLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           G + L   G  I  D L                  +     DV       L+ RE + L 
Sbjct: 125 GTVSLVRGGPPIAPDELRRTEPEMIWFCQFVHATMSNLIVSDVMPSGAMRLSLREKQVLH 184

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKT+ E+AVIL +S   V  +I + + K     ++ A   A    ++
Sbjct: 185 WTAEGKTAAEVAVILQLSERNVGFHIQNAIDKLDAANKTHATVKAAMLGLI 235


>gi|330822376|ref|YP_004362597.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
 gi|327374213|gb|AEA65567.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
          Length = 237

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 72/233 (30%), Gaps = 16/233 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R   L               + A +  +G  H        F       ++ SD+P     
Sbjct: 5   REIYLDLFATAKSGHDVFRELSAASRELGFEHCSFGMRVPFPISNPRYVLQSDYPEAWKE 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP--------AGMDNRYCSLTFDVARI 140
                        +Q       P+                    G+   +C +       
Sbjct: 65  RYIRHNYFAVDPTVQHGLTQSLPLTWQADGQTESTEFWEEAAHHGLRYGWC-MPACCQNG 123

Query: 141 RIGLMLLFPKGRIILRDRL----WEIGLLAAYQANMFKSY---DVHWGKDFELTGREVEC 193
            IGL+ +      I    L    + +  LA+   +   ++         + ELT RE E 
Sbjct: 124 TIGLVTMARSDEPIEERELLCKEYRMLWLASAVNSAMNAHLLAQSAPEYEVELTCREREA 183

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKT  EI +I+ +   TV  ++ + MRK     ++ A   A    ++
Sbjct: 184 LKWSAAGKTYVEIGMIMSVDDRTVKFHLVNTMRKLNAMNKTEAAVKAAMLGLL 236


>gi|324997340|ref|ZP_08118452.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 232

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 9/175 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +V++  P  L+  + +   D       V +  +     V  T  ++      +      
Sbjct: 58  ELVAALAPDVLLTDLRMPAGDGVSATRRVREGRSGTAVVVLTTYVDDDAVVDAIAAGASG 117

Query: 133 -LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGRE 190
            L+ D     IG  L      +       +  +LA   A+      V   +  + LT RE
Sbjct: 118 WLSKDADAEAIGRALRSAADGV----STVDAAVLARLVASRPAGAPVAEREPPDGLTPRE 173

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           VE L  I+EG ++ EIA  L +   TV  ++  +  K   + R+ A+ YA R+ +
Sbjct: 174 VEVLALIAEGLSNTEIARRLVVGEATVKTHVNHLFAKAGLRDRAQAVGYAYRHGL 228


>gi|228900854|ref|ZP_04065069.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228965235|ref|ZP_04126329.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794469|gb|EEM41981.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228858780|gb|EEN03225.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 209

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|218897232|ref|YP_002445643.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
 gi|218545309|gb|ACK97703.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
          Length = 213

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|229133094|ref|ZP_04261931.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228650370|gb|EEL06368.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 211

 Score = 99.3 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 10/213 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+     +   + + ++     E +G +          Q ++ D +V  D     +  + 
Sbjct: 7   LVEDHHIVRRGLVFFLKTREEFEIIGEAANGEEALTFVQTERPD-VVLMDLSMPKMDGIE 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +++ K Y+   +   L    F      +       + Y        ++   ++ ++   
Sbjct: 66  ATKRIKQYDETIKI--LMLSSFSEQDYVLPALEAGADGYQLKEVQPDQLVASIVAVYQGN 123

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                       LL        K           LT RE E L  I++G+++ EIA  L 
Sbjct: 124 ANFHPK--VTPALLGRSAVKKEKENPFSM-----LTKREQEVLREIAKGRSNKEIAAELH 176

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 177 ITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|228958531|ref|ZP_04120251.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229044008|ref|ZP_04191697.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229127661|ref|ZP_04256650.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|296502827|ref|YP_003664527.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
 gi|228655738|gb|EEL11587.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228725289|gb|EEL76557.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228801158|gb|EEM48055.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296323879|gb|ADH06807.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
          Length = 192

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 9/177 (5%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F +++   +V  D     +  +  +++ K Y+   +   L    F      I       
Sbjct: 21  HFMQKERPDVVLMDVSMPKMDGIEATKRLKQYDETIKV--LILSSFSEQDYVIPALEAGA 78

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   ++ +            +   +  A         +V       LT
Sbjct: 79  DGYQLKEVQPEQLVASIIAVHQGNAN------FHPKVTPALMGRSAVKKEV-ENPFSMLT 131

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 132 KREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188


>gi|119116629|dbj|BAF40892.1| LuxR [Shewanella hanedai]
          Length = 243

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE ECL WISEGKT+ EI+ IL  S  TV+ +I ++  K  T  RS +I+ ++   
Sbjct: 177 QLTPREKECLAWISEGKTTWEISKILDCSERTVSFHITNLQTKLGTNNRSQSISKSILTG 236

Query: 245 I 245
           +
Sbjct: 237 V 237


>gi|53719957|ref|YP_108943.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|52210371|emb|CAH36350.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|156105364|gb|ABU49181.1| BpsR5 [Burkholderia pseudomallei]
          Length = 241

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           R+  +   A           +    +  LT REVE L W ++GKTS EI+ IL IS +TV
Sbjct: 152 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 211

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N ++ + + K  T  ++ A+  A    ++
Sbjct: 212 NFHVKNAILKLRTANKTAAVVRAAMLGLL 240


>gi|119718601|ref|YP_925566.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119539262|gb|ABL83879.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 1006

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 11/124 (8%)

Query: 134  TFDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKSYDV----------HWGK 182
             +++AR+R  L  +      +   R L ++   +A+Q       D               
Sbjct: 882  AYELARVRTALAGILRATGDLAGGRELGDLARASAHQLGARPLLDELRSIGSAPARTESV 941

Query: 183  DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
               LT RE E L  +++G+++ EIA  L IS  TV+ ++++I+ K     R+ A A A R
Sbjct: 942  PDALTPRESEVLQLVAQGRSNGEIAKQLFISAKTVSVHVSNILGKLDASGRTEAAAIARR 1001

Query: 243  NNIV 246
              ++
Sbjct: 1002 RGLI 1005


>gi|297159285|gb|ADI08997.1| two component LuxR family transcriptional regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 228

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192
            V    IG +L   +   +             ++    +             +LT RE E
Sbjct: 94  AVRAGAIGFLLKNAEADELRSAVKGAAAGRIQVSPDATSRLMGQVRAPSGPEQLTEREAE 153

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LT ++ GK++ EIA  L I + TV  Y++ I+ K    +R+ A  YAV++ +V
Sbjct: 154 VLTMLARGKSNKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 207


>gi|218294966|ref|ZP_03495820.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
 gi|218244874|gb|EED11398.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
          Length = 217

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 31/182 (17%)

Query: 69  FQEQKLDSI-----VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            Q   LD +     +  +WP   V  + +  +D Y             VF  +       
Sbjct: 55  IQMPGLDGVQATKTILQEWPQAKVIILTMYRQDAY-------------VFEAVKAGARGY 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              D     L   + R+  G +LL  +    L  R+     +  ++A   +S  +H    
Sbjct: 102 LLKDTDAKELIEAIRRVHAGEVLLDAE----LAGRI-----IQDFRARKEQSLPLHA--- 149

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+ RE++ L  +++G T+ EIA  L +S  TV N ++ I +K     R+ A  YA+R 
Sbjct: 150 -ELSEREIQILKLVAQGYTNLEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIRE 208

Query: 244 NI 245
            +
Sbjct: 209 GL 210


>gi|94984662|ref|YP_604026.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554943|gb|ABF44857.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 228

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          +     L   V  +  G   L P               +A     
Sbjct: 103 VFALLEAGAAGYLLKNASEDELLGAVRAVAAGESALHP--------------AVARKVLE 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F ++      +  L+ RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    
Sbjct: 149 RFSTHQTPTPPEDALSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVG 208

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A+ Y ++   +
Sbjct: 209 SRTEAVLYGIKRGWI 223


>gi|303326587|ref|ZP_07357030.1| putative twin-arginine translocation pathway signal [Desulfovibrio
           sp. 3_1_syn3]
 gi|302864503|gb|EFL87434.1| putative twin-arginine translocation pathway signal [Desulfovibrio
           sp. 3_1_syn3]
          Length = 598

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           +R R        A     F+  D  WG    L+ RE++ LT +S G ++ +IA  L +S 
Sbjct: 84  IRMRPERTRFPGARVVMQFRRIDPPWG----LSLRELDVLTLLSAGLSNPDIAHELFLSP 139

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  ++ +I  K A K R  A+  A+ + +V
Sbjct: 140 RTVAKHVENIFIKLAVKNRVHAVRLALDHGLV 171


>gi|228920976|ref|ZP_04084313.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838670|gb|EEM83974.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 213

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELYITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|298251729|ref|ZP_06975532.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546321|gb|EFH80189.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 5/185 (2%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPP 123
           D     +   +V +  P  ++  + +   D    + Q   +   +   +  T  E+    
Sbjct: 39  DAADGAEAVRVVEALQPDVVLMDLRMPGMDGLEAITQIREQWPHIAVIILTTYDEDDLML 98

Query: 124 AGMDNRYC--SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            G+    C   L           +    +G I L+  +    L+    A           
Sbjct: 99  RGLRAGACGYLLKDTDRETLFHAIRTASRGDIFLQPEVMARILVRTTDAFHPTPSRSQAE 158

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + ELT RE + L  ++ G+ S EIA  LGIS  TV +++ SI  K    +R+ A+A  +
Sbjct: 159 GESELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGI 218

Query: 242 RNNIV 246
           +  ++
Sbjct: 219 KRGLL 223


>gi|254427282|ref|ZP_05040989.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
 gi|196193451|gb|EDX88410.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
          Length = 301

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 171 NMFKSYDVHWGKDFEL-------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++F+        + EL       T RE + L WI+ GKT+ EIA IL +S  TVN ++  
Sbjct: 217 HLFRLLHHDSDAELELLKNALHVTHREAQVLVWIAHGKTNREIAQILELSPRTVNKHLEQ 276

Query: 224 IMRKTATKTRSGAIAYAVR 242
           I RK   + R+ A A  ++
Sbjct: 277 IFRKLGVENRTAAAAMVIQ 295


>gi|329907385|ref|ZP_08274651.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546980|gb|EGF31877.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 267

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 49/100 (49%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L  +  ++    + ++  LA          +       EL+ RE + + W ++GKT+ EI
Sbjct: 163 LSEQELLLKESAMIDLADLAHLHMTECFVLEQFPESKTELSQRERDVIRWCADGKTNAEI 222

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A+IL IS ++VN ++ + ++K     ++ A+  A    ++
Sbjct: 223 AMILNISTSSVNFHVLNFIKKLDASNKTHAVMKAASFGLL 262


>gi|297202491|ref|ZP_06919888.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197709982|gb|EDY54016.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 212

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           LF   R   + R      +A+   +  ++      +   L+ RE E L  +++G ++ EI
Sbjct: 114 LFTAVRAAAQGRTVLSPAVASRLVSAVRAPGAPGNE--TLSAREREVLALVAKGTSNREI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 172 ARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 211


>gi|322387271|ref|ZP_08060881.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141800|gb|EFX37295.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 210

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
            R  ++       +    +    G LA  Q    K   +  H     ELT RE + L  I
Sbjct: 97  ARGYMLKTSSADELFHAVQKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLI 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 157 AKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|239983037|ref|ZP_04705561.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291454869|ref|ZP_06594259.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357818|gb|EFE84720.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 220

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 19/194 (9%)

Query: 71  EQKLDSIVSSD-WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           +Q++ S V+   W   +   +  S   +    +  P ++     H LP+        + R
Sbjct: 27  DQRVRSTVTRHLWALGVRDVIEASSIAEARPRVGNPRDICVADVH-LPDGSGLTLLSETR 85

Query: 130 YC---------------SLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANM 172
                            ++   +A    G ++   +  I L  R     IG  AA     
Sbjct: 86  AAGWPNGLALSAADDIGAVRNALAGGVKGYVVTGTRTNIGLPTRPGAAPIGSAAARMHRR 145

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                 H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  
Sbjct: 146 PPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGD 205

Query: 233 RSGAIAYAVRNNIV 246
           R+G +A A+R  I+
Sbjct: 206 RAGMVAVALRTGII 219


>gi|229029980|ref|ZP_04186046.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228731328|gb|EEL82244.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 215

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|148994461|ref|ZP_01823662.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|168488084|ref|ZP_02712283.1| response regulator [Streptococcus pneumoniae SP195]
 gi|168490693|ref|ZP_02714836.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|168494570|ref|ZP_02718713.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|225860419|ref|YP_002741928.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|147927210|gb|EDK78245.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|183572895|gb|EDT93423.1| response regulator [Streptococcus pneumoniae SP195]
 gi|183575039|gb|EDT95567.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183575541|gb|EDT96069.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|225726539|gb|ACO22390.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|332075238|gb|EGI85708.1| response regulator [Streptococcus pneumoniae GA17570]
          Length = 210

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       ELT RE + L  
Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|332142261|ref|YP_004427999.1| two-component response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552283|gb|AEA99001.1| two-component response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 298

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   +T RE E L WIS GKTS EI+ IL +S  T N ++  I +K     ++ A A A+
Sbjct: 233 EKLPITKRESEVLYWISFGKTSWEISQILDMSPRTANKHLEQIYKKLGVDNKTSAAAIAL 292

Query: 242 R 242
           R
Sbjct: 293 R 293


>gi|269792412|ref|YP_003317316.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100047|gb|ACZ19034.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 227

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 13/176 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNR 129
            +VS+  P  L+  + + +KD    V         P  +    F          +   + 
Sbjct: 43  EMVSALKPDVLLFDIHMPKKDGIQVVKDLKAMGCSPRFVAITAFDDDDHITALSSVGIDA 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      +A +   +  ++     +          +A    + F            LT R
Sbjct: 103 YVLKASGMAELLSAIRSVYRGHSYVDPK-------VAGKLLSTFNRRREERDLLSRLTPR 155

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+E L WIS+G  + EIA  + +S  TV N+++ I++K     R+ A  +A +  +
Sbjct: 156 EMEVLYWISQGLNNGEIARKMVLSEKTVKNHVSHILKKLDLVDRTQAAVFAWKRGL 211


>gi|89098035|ref|ZP_01170921.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89087198|gb|EAR66313.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 210

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 82/223 (36%), Gaps = 22/223 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDLFQE------QKLDSIVSSDWPFD 85
           + R++ ++  V     +  + E  GA  F +    +  QE           I+  D    
Sbjct: 1   MNRILIVEDQVIVRQGLRMIIEQDGA--FSVAGEAENGQEAIEKMESHGADIILMDIQMP 58

Query: 86  LVRCMALSEKDKYYNVLQRPTE--LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           ++  +  +   +     + P    L    F+     +       N +   T D  R+   
Sbjct: 59  VMNGIEATRMIRK----RWPAVKILILTTFNDEDYALQTLREGTNGFLLKTSDGPRLLQS 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G  I          +AA        +  H   +  LT RE +    I  GKT+
Sbjct: 115 IRSCLEGGISIHE-------QVAAKVMPKLLDHSCHEEAEVPLTPRERDIARLIGHGKTN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV N++  I++K   + R+    +AV+N+I+
Sbjct: 168 KEIANELYLSVGTVKNHLTQILQKLDLRDRTQLAIFAVKNDIL 210


>gi|87306600|ref|ZP_01088747.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
 gi|87290779|gb|EAQ82666.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
          Length = 210

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           + E  L+   +  M K  +     D  LT RE++ L  ++ G ++ EI   L IS  TV 
Sbjct: 124 IAEDSLMNRVRGAMAKRQEAKHS-DIPLTNREMQVLRHLALGLSNREIGRSLTISIETVK 182

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ +I+RK     R+ A  +AVR  +V
Sbjct: 183 EHVQNILRKIDVTDRTQAAVWAVRRGLV 210


>gi|228908028|ref|ZP_04071877.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851625|gb|EEM96430.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 209

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|229155851|ref|ZP_04283952.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627458|gb|EEK84184.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 211

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|76811685|ref|YP_334182.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 1710b]
 gi|124386221|ref|YP_001028861.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126450742|ref|YP_001081227.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10247]
 gi|167003830|ref|ZP_02269610.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|167720437|ref|ZP_02403673.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei DM98]
 gi|167816634|ref|ZP_02448314.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167825038|ref|ZP_02456509.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
 gi|167846546|ref|ZP_02472054.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167895126|ref|ZP_02482528.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167903510|ref|ZP_02490715.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167919762|ref|ZP_02506853.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
 gi|242317090|ref|ZP_04816106.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254195948|ref|ZP_04902374.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|76581138|gb|ABA50613.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710b]
 gi|124294241|gb|ABN03510.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
 gi|126243612|gb|ABO06705.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10247]
 gi|169652693|gb|EDS85386.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|242140329|gb|EES26731.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|243060693|gb|EES42879.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
          Length = 237

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           R+  +   A           +    +  LT REVE L W ++GKTS EI+ IL IS +TV
Sbjct: 148 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 207

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N ++ + + K  T  ++ A+  A    ++
Sbjct: 208 NFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|311896597|dbj|BAJ29005.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 80/215 (37%), Gaps = 20/215 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +  +         + A+ E+      L VR  +    +    V ++ P   V  +
Sbjct: 19  DAQPDIEVVAEAGDGRQAVDAVREHAPDVLLLDVRMPVMDGLEAARRVCAEHPACKVIML 78

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
              + D Y             VF  L    +     D R   L   V  +  G  LL P 
Sbjct: 79  TTFDVDDY-------------VFDALYAGASGFLLKDVRRDDLVHAVRVVDSGEALLAPS 125

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209
              + R  + E+    A  A          G+  E LTGRE E L  ++ G ++ EIA  
Sbjct: 126 ---VTRRVIGEVTARKAAGAAAVPRP---LGRLLESLTGREAETLKLVARGMSNAEIAAE 179

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L +S +TV  +++++++K   + R  A+ +A    
Sbjct: 180 LVVSEHTVKTHVSNLLQKLGLRDRVHAVVFAYEAG 214


>gi|281491392|ref|YP_003353372.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375126|gb|ADA64642.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 209

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E     ++  D   D +  +  ++K    N  ++   +         E + P      + 
Sbjct: 46  EILDPDVILMDLVMDRLDGIGATQKILAKNPERK---ILILTSFIDDEKVFPALAAGAKG 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L    A      +     G  +L D + E   +A  +    + YD       +L+ RE
Sbjct: 103 YILKTSQAADIASAIRKVANGEDVLSDAVKEK--IAQQKHRKHELYD-------DLSKRE 153

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  ++ G ++ EIA  L IS  TV  ++++I  K     R+ A  YA+++++V
Sbjct: 154 LEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209


>gi|227823797|ref|YP_002827770.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
 gi|227342799|gb|ACP27017.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
          Length = 246

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 84/239 (35%), Gaps = 24/239 (10%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
             LA +  +            L +  G   + +VR     E  L  +++  WP    +  
Sbjct: 8   QFLALLEEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLRLLLAGRWPESWPQIY 67

Query: 91  A-------------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
                         L    + +                  E++   A     +    F V
Sbjct: 68  IRKKYVVIDPTIRYLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGDIFPV 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF----------KSYDVHWGKDFELT 187
              R GLM     G  ++     E+ L  A    +F             ++    + ++T
Sbjct: 128 -HGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMT 186

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L ++++G TS++I  +L IS +TV+ Y+  I  K   K R  A+A A R  ++
Sbjct: 187 RREMEALNYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHAVAIAFRLGLI 245


>gi|317506595|ref|ZP_07964387.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255104|gb|EFV14382.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 218

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 10/174 (5%)

Query: 78  VSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCS 132
           V+   P  ++  + + + D      +L+  +     V  T  ++             +  
Sbjct: 47  VAEHKPDLVLMDLRMKQVDGIEATRLLRAASGPPVLVLTTFDDDELLSGALRAGAAGFIL 106

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +      +       +  LAAY+            K   LT RE+E
Sbjct: 107 KDSPAEDLIWAVRAVAGGDGFLDPAVTARV--LAAYRTAPSARQKQASDK---LTARELE 161

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I+ G  + EIA  L IS  TV ++I  I  K   + R+ AI YA    +V
Sbjct: 162 VLRLIARGANNTEIAERLFISEVTVKSHIGRIFAKLGLRDRAAAIVYAYDQGVV 215


>gi|15806010|ref|NP_294711.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6458715|gb|AAF10563.1|AE001951_3 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 239

 Score = 98.9 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 14/135 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          +     L   V  +  G   L P               +A     
Sbjct: 114 VFALLEAGAAGYLLKNASEDDLLGAVRAVAAGESALHPS--------------IARKVLE 159

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F         + +L+ RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    
Sbjct: 160 RFSVASTPTPPEDDLSPRELEVLRVAASGRTNKEIARDLDISPRTVQVHLANIFSKLGVG 219

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A+ + ++   +
Sbjct: 220 SRTEAVLHGIKRGWI 234


>gi|239945114|ref|ZP_04697051.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991577|ref|ZP_04712241.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448577|ref|ZP_06587967.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351524|gb|EFE78428.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 220

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 55/130 (42%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P  +   A  D                +           R  +  IG  AA         
Sbjct: 90  PNGLALSAADDIGAVRNALAGGVKGYVVTGTRTNIGHPARPGVAPIGANAARMHRRPPGS 149

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G 
Sbjct: 150 PSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGM 209

Query: 237 IAYAVRNNIV 246
           +A A+R  I+
Sbjct: 210 VAVALRTGII 219


>gi|182435268|ref|YP_001822987.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326775907|ref|ZP_08235172.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178463784|dbj|BAG18304.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656240|gb|EGE41086.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 220

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R  +  IG  AA           H G   EL+GREVE L  ++EG+++  I V +G+S  
Sbjct: 129 RPGVAPIGANAARMHRRPPGSPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSAL 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +++A I RK  T  R+G +A A+R  I+
Sbjct: 189 TVKSHLARIARKLGTGDRAGMVAVALRTGII 219


>gi|15672873|ref|NP_267047.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723822|gb|AAK04989.1|AE006323_4 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406436|gb|ADZ63507.1| two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 209

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 17/135 (12%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L           ++   +   + ++  G          +L D + E   +A  +  
Sbjct: 92  VFPALAAGAKGYILKTSQAADIASAIRKVANG--------EDVLSDAVKEK--IAQQKHR 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + YD       +L+ RE+E L  ++ G ++ EIA  L IS  TV  ++++I  K    
Sbjct: 142 KHELYD-------DLSKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVS 194

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YA+++++V
Sbjct: 195 DRTQATIYAIQHHLV 209


>gi|134291173|ref|YP_001114942.1| response regulator receiver protein [Burkholderia vietnamiensis G4]
 gi|134134362|gb|ABO58687.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 260

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA-YQANMFKSYDVHWGK 182
           AG+ N       ++    + + L  P  RI    +     +++  ++  + +    H  +
Sbjct: 136 AGLKNGLSIPIREIGGSILLINLSGPSSRINTGTKRQLASVISNLFRLELDRLAPPHPNE 195

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ R+ +CL+W+++GKTS +I +IL ISR+TV  +I   MR     +R  A   A  
Sbjct: 196 FIQLSPRQRQCLSWVAQGKTSSDICMILKISRHTVEYHITEAMRVLNVNSRIAAAVIASN 255

Query: 243 NNIV 246
             ++
Sbjct: 256 YGLL 259


>gi|148655092|ref|YP_001275297.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148567202|gb|ABQ89347.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 242

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 6/180 (3%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+ +  +V  D     +  + ++   K      R   +   V+    +           Y
Sbjct: 47  ERLVPDVVLVDINLPGLNGLEVARVIKRREP--RIGLIVISVYEDDDQLFQAIKVGAAAY 104

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFEL 186
            S       +   +  +     +I    + +  +         +      +        L
Sbjct: 105 SSKDVHPRDLVRMIREVARGKYLINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPL 164

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+ YA++   +
Sbjct: 165 TSREIEILDCIARGLSNKEIASQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224


>gi|282862337|ref|ZP_06271399.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562676|gb|EFB68216.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 222

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 7/133 (5%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L          D R   +   +  +  G   L PK +  L +R             +
Sbjct: 88  FTALQAGARGYLTKDARGEEIVQAIDAVMSGEAGLSPKVQRRLLER-------VTGSETV 140

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                +       LT RE E L  I+EG ++ EIA  L +S  TV  +I ++  KT  + 
Sbjct: 141 PAPCALPSELPDGLTPREAEVLVLIAEGLSNREIARALHVSAATVKTHINNLFAKTGARD 200

Query: 233 RSGAIAYAVRNNI 245
           R+ A+ YA    +
Sbjct: 201 RTQAVRYAYGRGL 213


>gi|262203128|ref|YP_003274336.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262086475|gb|ACY22443.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 228

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EGK++ EI   L ++  TV  ++++++ K   + R+ A+ +A  N +
Sbjct: 168 LTPREREVLDLVAEGKSNAEIGAELFVAEQTVKTHVSNVLAKLGLRDRAQAVVFAYENGL 227


>gi|239638058|ref|ZP_04679017.1| response regulator protein VraR [Staphylococcus warneri L37603]
 gi|239596341|gb|EEQ78879.1| response regulator protein VraR [Staphylococcus warneri L37603]
          Length = 209

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 67/156 (42%), Gaps = 13/156 (8%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150
             +    + +    +   +  +  E+      +D   + Y   T   + I   +   +  
Sbjct: 63  GVEATTEIKKDLPHIKVVMLTSFIEDKEVYRALDAGVDSYILKTTSASDIAEAVRKTYHG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +   + L ++      +  M K  +++      LT RE+E L  I++G ++ EIA   
Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTDREMEILLLIAKGYSNQEIASAS 172

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|156741128|ref|YP_001431257.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232456|gb|ABU57239.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 222

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 17/225 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++ +D        +  L E       VGA        +   E+    +V  D     
Sbjct: 1   MIRVLLVDDQTLIRQGIAMLLELEPDLEVVGAVGDGRAAIEAV-ERLHPDVVLMD----- 54

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           VR   +        + +R  ++   +  T  ++     G+      Y         +   
Sbjct: 55  VRMPGMDGVTATRELRRRFPDVGVIILTTFDDDEYVFEGLKAGARGYLLKDISSEEMAEA 114

Query: 144 LMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +  +     +I     R      L    +       +       LT RE++ L  ++ G 
Sbjct: 115 VRTVARGEALIQPSIARKVVAEFLRLAVSAPAAPERMTPKSPNALTERELDVLKALARGM 174

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L I+  TV  +I++I+ K   + R+ A+  A +  ++
Sbjct: 175 SNKEIAAALVITEGTVKTHISNILAKLDVRDRTQAVLKAQQLRLL 219


>gi|88797997|ref|ZP_01113584.1| two-component transcriptional regulator, LuxR family protein
           [Reinekea sp. MED297]
 gi|88779194|gb|EAR10382.1| two-component transcriptional regulator, LuxR family protein
           [Reinekea sp. MED297]
          Length = 303

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LTGRE E L WI+ GKT+ E A IL +S  TVN ++  I  K     R+ A   A++
Sbjct: 235 ELDLTGRESEVLYWIANGKTNRETAEILAMSPRTVNKHLEQIFSKLGVDNRTSAAGVALK 294


>gi|37523311|ref|NP_926688.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35214315|dbj|BAC91683.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 221

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 39/81 (48%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A   A   +        +  LT REVE L+ ++EG  +  IA  L IS +TV  +I SI 
Sbjct: 139 AMLCALPGQPRPPTEAPEQPLTPREVEVLSMLAEGLGNKTIARRLQISEHTVKFHIGSIF 198

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K    +R+ A+   VR  ++
Sbjct: 199 GKLEATSRTEAVTLGVRRGLI 219


>gi|307708226|ref|ZP_07644693.1| response regulator [Streptococcus mitis NCTC 12261]
 gi|307615672|gb|EFN94878.1| response regulator [Streptococcus mitis NCTC 12261]
          Length = 210

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
            R  ++       ++   R    G LA  Q    K   +  H     +LT RE + L  I
Sbjct: 97  ARGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLI 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 157 AKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|153831751|ref|ZP_01984418.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
 gi|148872261|gb|EDL71078.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
          Length = 214

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 2/151 (1%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           S+   Y    ++             +     +    +      D        +     G 
Sbjct: 65  SDTLVYLKDNEKVLGTIMLNLGHDLDASELASWPHVKGIFGPNDSMEKLCQGLSAIISGE 124

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
             L  RL +   L  Y       + V    + ELT REV+ L  + EG ++ EIA  L I
Sbjct: 125 NWLSRRLLD--QLVNYYKGKEVHHVVEPAIEVELTRREVQVLQMLKEGGSNMEIADSLFI 182

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           S +T+ +++ +I RK   K R+ A ++A RN
Sbjct: 183 SEHTIKSHLYNIFRKIEVKNRTQATSWAKRN 213


>gi|94313908|ref|YP_587117.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357760|gb|ABF11848.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 237

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 55/135 (40%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++    T     D     L   V  +R G   + P     + +RL +  + A     
Sbjct: 100 VLASISAGATGYLLKDASDEDLRASVRELRAGGSPMSPVIARRVINRLRDANIPAPRAVR 159

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +  +       L+ RE E L  ++ G T  EIA  L IS NTV  +I +I  K A  
Sbjct: 160 AEPATPLLPEAVVALSARESEILDLVARGYTYAEIARHLSISVNTVAAHIRNIYGKLAVN 219

Query: 232 TRSGAIAYAVRNNIV 246
           +RS A+  A +  ++
Sbjct: 220 SRSEAVFEAHKLGLL 234


>gi|15900310|ref|NP_344914.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|15902388|ref|NP_357938.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|111657155|ref|ZP_01407935.1| hypothetical protein SpneT_02001620 [Streptococcus pneumoniae
           TIGR4]
 gi|116517140|ref|YP_815865.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148988147|ref|ZP_01819610.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148996798|ref|ZP_01824516.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149006139|ref|ZP_01829868.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149012131|ref|ZP_01833240.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|168485529|ref|ZP_02710037.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|168576782|ref|ZP_02722640.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|182683352|ref|YP_001835099.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|221231258|ref|YP_002510410.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225856124|ref|YP_002737635.1| response regulator [Streptococcus pneumoniae P1031]
 gi|225858242|ref|YP_002739752.1| response regulator [Streptococcus pneumoniae 70585]
 gi|298231095|ref|ZP_06964776.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254642|ref|ZP_06978228.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502187|ref|YP_003724127.1| LuxR family response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303255739|ref|ZP_07341782.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303259462|ref|ZP_07345439.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262993|ref|ZP_07348927.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|303267350|ref|ZP_07353209.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|303269845|ref|ZP_07355590.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|307067043|ref|YP_003876009.1| CheY-like receiver/HTH DNA-binding domain-containing response
           regulator [Streptococcus pneumoniae AP200]
 gi|307126599|ref|YP_003878630.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|5830527|emb|CAB54571.1| response regulator [Streptococcus pneumoniae]
 gi|14971857|gb|AAK74554.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|15457902|gb|AAK99148.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116077716|gb|ABJ55436.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147757373|gb|EDK64412.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147762495|gb|EDK69456.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147763733|gb|EDK70667.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147926611|gb|EDK77684.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|182628686|gb|ACB89634.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|183571158|gb|EDT91686.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|183577579|gb|EDT98107.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|220673718|emb|CAR68214.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225722011|gb|ACO17865.1| response regulator [Streptococcus pneumoniae 70585]
 gi|225724954|gb|ACO20806.1| response regulator [Streptococcus pneumoniae P1031]
 gi|298237782|gb|ADI68913.1| LuxR family response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301793635|emb|CBW36018.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301801302|emb|CBW33982.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302597299|gb|EFL64402.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302635884|gb|EFL66385.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639396|gb|EFL69854.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302640613|gb|EFL71015.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|302643121|gb|EFL73409.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|306408580|gb|ADM84007.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Streptococcus pneumoniae AP200]
 gi|306483661|gb|ADM90530.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|332076827|gb|EGI87289.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332077675|gb|EGI88136.1| response regulator [Streptococcus pneumoniae GA41301]
          Length = 210

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       ELT RE + L  
Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|332204409|gb|EGJ18474.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 210

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMIKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       ELT RE + L  
Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|75761109|ref|ZP_00741104.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491401|gb|EAO54622.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 219

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 157 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 215


>gi|124516028|gb|EAY57537.1| putative two component transcriptional regulator, LuxR family
           [Leptospirillum rubarum]
          Length = 211

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F +           D    SL   +    +G + L P    I    L  I +L      
Sbjct: 92  IFSSFSAGADGYCLKDTTVDSLLLAIRAAGMGSVYLDP---AIAHLALNRIRVL------ 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                  +   D  L+ RE E L  +S+G ++ EI  I GIS +TV  +I SI+ K +  
Sbjct: 143 ------DYPANDNPLSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSAS 196

Query: 232 TRSGAIAYAVRNNIV 246
           TR+ A   A++  ++
Sbjct: 197 TRADAAVKAIKKGLI 211


>gi|329314560|gb|AEB88973.1| Response regulator protein vraR [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 209

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150
             +    + +   ++   +  +  E+      +D   + Y   T     I   +      
Sbjct: 63  GVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +   + L ++      +  M K  +++      LT RE+E L  I++G ++ EIA   
Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 233

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 21/214 (9%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           A+  Y+  SHF +       E     I+  + P  ++  + + + D Y     + + P  
Sbjct: 20  AVQAYLEDSHFNVDVASNANEGWD--ILEKNLPDLVITDVMMPQVDGYQFLQKLREEPRF 77

Query: 108 LFCPVFHTLPENIT-----PPAGMDNRYCSLTFDVAR-IRIGLMLLFPKGRIILRDRLWE 161
              PV     + +T           + Y S  FD    + I   LL  +      +   +
Sbjct: 78  KALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVNNLLERRASAQTANGDEK 137

Query: 162 IGLLAAYQANMFKSYDVHWGKD----------FELTGREVECLTWISEGKTSDEIAVILG 211
              +AA    + +   +  GK+           +LT RE   L  ++ G  + EIA  L 
Sbjct: 138 TSDIAALAGQIAEIKAMLMGKNAIAKTTSVIKIDLTPREQSVLDLVARGLMNKEIARDLS 197

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 198 TSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 231


>gi|262370436|ref|ZP_06063762.1| two component transcriptional regulator [Acinetobacter johnsonii
           SH046]
 gi|262314778|gb|EEY95819.1| two component transcriptional regulator [Acinetobacter johnsonii
           SH046]
          Length = 228

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 87/217 (40%), Gaps = 12/217 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           ++       R+  +   +G S  +L+      E     I++S      +  + L + +  
Sbjct: 15  VEDEAMIRSRLDLILSELGYSQDMLIFAKNLAEAM--QIIASQPISLALVDLGLPDGNG- 71

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGM-------DNRYCSLTFDVARIRIGLMLLFPKG 151
             ++++  E+       +    +    +        N Y     D A + + +  +   G
Sbjct: 72  ITLIEKLREIDESALILVISAWSTQQSLFASIKAGANGYVLKERDDAEVLMSIRSILRGG 131

Query: 152 RIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVI 209
             I      EI   ++       +  +   G+D+ +LT RE E L  +++G ++ EIA  
Sbjct: 132 APIDPFIAREILNQISTSNTPQTERVEQLDGQDYDQLTNRETEILNLVAQGLSNREIAEQ 191

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +SR TV ++I  I RK +   R+ A++ A    I+
Sbjct: 192 LFVSRYTVESHIKHIYRKLSVSKRTKAVSTARSLGIL 228


>gi|110834848|ref|YP_693707.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis
           SK2]
 gi|110647959|emb|CAL17435.1| DNA-binding response regulator, LuxR family [Alcanivorax
           borkumensis SK2]
          Length = 301

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 171 NMFKSYDVHWGKDFEL-------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++F+        + EL       T RE + L WI+ GKT+ EIA IL +S  TVN ++  
Sbjct: 217 HLFRLLHHDSDAELELLKTALHVTHRESQVLVWIAHGKTNREIAQILELSPRTVNKHLEQ 276

Query: 224 IMRKTATKTRSGAIAYAVR 242
           I RK   + R+ A A  ++
Sbjct: 277 IFRKLGVENRTAAAAMVIQ 295


>gi|260467388|ref|ZP_05813560.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028848|gb|EEW30152.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 242

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 79/231 (34%), Gaps = 19/231 (8%)

Query: 31  DLLARMIPLDCTVSWTMRM---YALTEYVGASHFLLVRWDLFQEQKLDSIVSSD-WPFDL 86
           DL   +  +D   S    +       E  G  +FL+    +         + +D W  + 
Sbjct: 8   DLFGAITKIDTARSAEAILHEFRLAMERYGLRNFLITGLPVPHGTDWQREILADGWSPEW 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPA-----------GMDNRYCSLT 134
                  E   +   + +      P  +  LP                  GM    C + 
Sbjct: 68  HHRYVSEEYFLHDPCVAQCRHSPEPFRWAELPAARLVARAKLVMDEAAEFGMKEGIC-VP 126

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVE 192
             V     G++ +      +    +  I  L  +               +   LT RE E
Sbjct: 127 IHVPLAGPGVVTMASDRMDVPPSAMPLIETLCVHTFRSLSGLGTPGDGYEPTPLTARERE 186

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L W ++GK++D+IA ILG++RNTV ++  +I  K      + AI  A+R 
Sbjct: 187 LLEWSAQGKSTDDIACILGVTRNTVESHQRNIRAKLDAINVAHAIVKALRR 237


>gi|229011537|ref|ZP_04168723.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228749692|gb|EEL99531.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 211

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|306825821|ref|ZP_07459160.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432182|gb|EFM35159.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 210

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       +LT RE + L  
Sbjct: 107 ADELLHAVRKVAAGELAIEQ----EVSKKVEYHRNHIELHE-------DLTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|238795934|ref|ZP_04639446.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
 gi|238720139|gb|EEQ11943.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
          Length = 245

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 15/123 (12%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD---VHWGKD 183
           D+ Y   + +V + +I ++L+    +           +L  YQ N+ ++ +   V  G++
Sbjct: 132 DSIYFDESIEVNKEKIQMLLILTHDK-----------MLGLYQKNINENNELGKVPNGRE 180

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              + RE E L W S GKT  EIA+ILGI R+TV  +I +++RK        AI   +  
Sbjct: 181 I-FSPRENEILYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIEL 239

Query: 244 NIV 246
            ++
Sbjct: 240 KLI 242


>gi|149003489|ref|ZP_01828363.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|169833867|ref|YP_001693899.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|194398711|ref|YP_002037067.1| response regulator [Streptococcus pneumoniae G54]
 gi|225853962|ref|YP_002735474.1| response regulator [Streptococcus pneumoniae JJA]
 gi|237649348|ref|ZP_04523600.1| response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237821532|ref|ZP_04597377.1| response regulator [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758425|gb|EDK65424.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|168996369|gb|ACA36981.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|194358378|gb|ACF56826.1| response regulator TCS03 [Streptococcus pneumoniae G54]
 gi|225723015|gb|ACO18868.1| response regulator [Streptococcus pneumoniae JJA]
          Length = 210

 Score = 98.9 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       ELT RE + L  
Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|218235485|ref|YP_002366962.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
 gi|228952605|ref|ZP_04114681.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229069791|ref|ZP_04203074.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229079433|ref|ZP_04211974.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229150487|ref|ZP_04278703.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|218163442|gb|ACK63434.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
 gi|228632980|gb|EEK89593.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228703890|gb|EEL56335.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228713326|gb|EEL65218.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228807071|gb|EEM53614.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 213

 Score = 98.5 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|322390996|ref|ZP_08064501.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321142300|gb|EFX37773.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 210

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 23/204 (11%)

Query: 55  YVGASHFLLVRWDLFQE------QKLDSIVSSDWPFDLVRCMALSEKDKYYNVL----QR 104
            +G   FL ++ D+ Q       QK   +   + P  ++  + + E +     L    + 
Sbjct: 13  RLGLKSFLSMQTDIEQVLEAQNGQKGVELALKEKPDVIIMDIVMPELNGIDATLAILKEW 72

Query: 105 PTELFCPVFHTLPENITPP--AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           P      +   L      P        Y   T     I   +  +      I  +     
Sbjct: 73  PEAKIVILTSYLDNEKIYPVLDAGAKGYILKTSSATEILQAVRKVAKGEFAIETE----- 127

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                  +   KS   H     +LT RE + L  +++G  +  IA  L IS  TV  +++
Sbjct: 128 ------VSQKVKSRKNHAELHDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVS 181

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I+ K     R+ A+ YA R+++V
Sbjct: 182 NILSKLEVSDRTQAVVYAFRHHLV 205


>gi|229091257|ref|ZP_04222475.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228692023|gb|EEL45764.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 209

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 40/75 (53%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A + +S          LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K  
Sbjct: 133 AILGRSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLE 192

Query: 230 TKTRSGAIAYAVRNN 244
              R+ A  YAV++ 
Sbjct: 193 VDDRTQAALYAVKHG 207


>gi|158335372|ref|YP_001516544.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158305613|gb|ABW27230.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 227

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 83/219 (37%), Gaps = 34/219 (15%)

Query: 51  ALTEYVGASHFLL-------VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YN 100
           A+  Y+  S F +         W+L Q Q++  +V SD        + + E D Y     
Sbjct: 17  AVQAYLEDSGFTVDVASNAKAGWELLQ-QRIPDLVISD--------IMMPEVDGYQFLAQ 67

Query: 101 VLQRPTELFCP-VFHTLP----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           + + P  +  P VF T      + I       + Y S  FD   +   +  L  +     
Sbjct: 68  LREDPRFMRLPIVFLTARGMTKDRIEGYNAGVDAYLSKPFDPDELVAIVTNLLTRKEAKD 127

Query: 156 RDRLWEIGLLAAYQANM---------FKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            +   +I  LA   A +           + +    K  + T RE   L  ++ G  + EI
Sbjct: 128 ANATTDIADLANQVAEIRAILMNRAPLPTQNTPTVK-IDFTPREQSVLDLVAVGLMNKEI 186

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L  S   V  Y++ +  KT T +R+  + +A+ N +
Sbjct: 187 ARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALENGL 225


>gi|57652103|ref|YP_186767.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751537|ref|YP_417278.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87161005|ref|YP_494517.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195780|ref|YP_500589.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222034|ref|YP_001332856.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161510103|ref|YP_001575762.1| response regulator VraR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141457|ref|ZP_03565950.1| response regulator VraR [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253734427|ref|ZP_04868592.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451050|ref|ZP_05699086.1| two-component system response regulator [Staphylococcus aureus
           A5948]
 gi|262050230|ref|ZP_06023081.1| two-component response regulator [Staphylococcus aureus D30]
 gi|262052884|ref|ZP_06025068.1| two-component response regulator [Staphylococcus aureus 930918-3]
 gi|282923220|ref|ZP_06330901.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9765]
 gi|284024930|ref|ZP_06379328.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|294849429|ref|ZP_06790171.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9754]
 gi|304379068|ref|ZP_07361815.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|81694172|sp|Q5HEP0|VRAR_STAAC RecName: Full=Response regulator protein vraR
 gi|57286289|gb|AAW38383.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82657068|emb|CAI81505.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87126979|gb|ABD21493.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203338|gb|ABD31148.1| DNA-binding response regulator VraR, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|150374834|dbj|BAF68094.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368912|gb|ABX29883.1| response regulator VraR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253727580|gb|EES96309.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257861292|gb|EEV84104.1| two-component system response regulator [Staphylococcus aureus
           A5948]
 gi|259159238|gb|EEW44298.1| two-component response regulator [Staphylococcus aureus 930918-3]
 gi|259161692|gb|EEW46283.1| two-component response regulator [Staphylococcus aureus D30]
 gi|269941355|emb|CBI49752.1| response regulator VraR [Staphylococcus aureus subsp. aureus TW20]
 gi|282593131|gb|EFB98130.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9765]
 gi|294823566|gb|EFG39993.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9754]
 gi|298695222|gb|ADI98444.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300078692|gb|ADJ67243.1| VraR [Staphylococcus aureus]
 gi|300078695|gb|ADJ67245.1| VraR [Staphylococcus aureus]
 gi|300078698|gb|ADJ67247.1| VraR [Staphylococcus aureus]
 gi|302751756|gb|ADL65933.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342303|gb|EFM08195.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315196046|gb|EFU26406.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139738|gb|EFW31607.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142346|gb|EFW34160.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323439154|gb|EGA96882.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323441562|gb|EGA99212.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329728633|gb|EGG65063.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 209

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150
             +    + +   ++   +  +  E+      +D   + Y   T     I   +      
Sbjct: 63  GVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +   + L ++      +  M K  +++      LT RE+E L  I++G ++ EIA   
Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|297155058|gb|ADI04770.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 221

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 6/154 (3%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           + +     +   P  +    F +            + +         I   + L+     
Sbjct: 69  ATRQLRSTLEDPPKVVVITTFESDEHVYDALRAGADGFILKRTPSQAIAHAIRLVATGDS 128

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++  D +  +       A          G    LT RE E L  ++ G ++ +IA  L +
Sbjct: 129 VLFPDAVRRL-----VAARPLPPVGPAAG-HAPLTARETEILRLMATGLSNPDIAGRLTV 182

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  ++++++ K   + R+ A+  A  + +V
Sbjct: 183 SLETVKTHVSNLLTKLGAQNRTQAVILAYESGLV 216


>gi|228939396|ref|ZP_04101986.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972275|ref|ZP_04132888.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978889|ref|ZP_04139256.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228780846|gb|EEM29057.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228787459|gb|EEM35425.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820291|gb|EEM66326.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 209

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|229190347|ref|ZP_04317348.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228593131|gb|EEK50949.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
          Length = 209

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|251795142|ref|YP_003009873.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542768|gb|ACS99786.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 230

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 V      +LT RE++ L  +++G ++ EIA  L I   TV  +I +I  K   +
Sbjct: 155 RKPKQPVQAALHDDLTEREMDVLKRVAQGMSNQEIADELFIGVKTVKFHITNIFNKLDVE 214

Query: 232 TRSGAIAYAVRNNI 245
            R+ A  YA +  I
Sbjct: 215 DRTQAAIYAHKQGI 228


>gi|326939967|gb|AEA15863.1| two-component response regulator yhcZ [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 213

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|254492498|ref|ZP_05105670.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxidans DMS010]
 gi|224462390|gb|EEF78667.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxydans DMS010]
          Length = 215

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D+ +  +   ++++  G   + P    I R  L E+ +    +  
Sbjct: 91  VIEALKAGASGYLLKDDDFMDINEAISQMVDGGAPISPS---IARYLLNELSIAEPAKPE 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S DV       L+ RE E L  +S+G TS EIA +L +S  TV  Y++++ +K + K
Sbjct: 148 QKNSPDV-------LSPREKEVLLLVSKGYTSKEIAKMLDLSYYTVREYVSNVYKKLSVK 200

Query: 232 TRSGAIAYAVRNNIV 246
            +  A++ A    I+
Sbjct: 201 NKMQAVSEATLLGII 215


>gi|30020351|ref|NP_831982.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|229109704|ref|ZP_04239290.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229144857|ref|ZP_04273254.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|29895902|gb|AAP09183.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228638579|gb|EEK95012.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228673745|gb|EEL29003.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 213

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|261855565|ref|YP_003262848.1| LuxR family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261836034|gb|ACX95801.1| transcriptional regulator, LuxR family [Halothiobacillus
           neapolitanus c2]
          Length = 237

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIG-------LLAAYQANMFKSYDVHWGKDFELTGREVE 192
            R GL+ L      I    L E+         ++ +  +   +          LT RE +
Sbjct: 123 GRRGLLTLTRGHEPISELELKELQYRLTWLTQISHHCMSEIITTKKMPETMITLTMREKD 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W + GKTS E + I+ I+  TVN +IA+ M+K     ++ A   A    ++
Sbjct: 183 VLRWTAAGKTSGETSTIMNITERTVNFHIANSMQKLNCINKTSATVRAAMLGLL 236


>gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 204

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 12/168 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +    + E  +          +F   +    +  T      + Y     
Sbjct: 47  DLVMCDITMPEMNGHRVLEALRAEPATSHVPFIFLTGWGEREDVRTGMNLGADDYLVKPV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   +     + +     R  + G  A  Q            +   LT RE E L 
Sbjct: 107 EPADLIAAVQARLRRAQAANPARPAK-GEAAPAQL-----------EPLGLTPREAEILF 154

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           W+++GKT+ EIA ILGI   TV  ++ ++  K   + R+ A A A+  
Sbjct: 155 WVAQGKTNPEIATILGIGLTTVKKHLEAVFVKLGVENRTSAAALALEQ 202


>gi|2495419|sp|Q46967|ECHR_ERWCH RecName: Full=Transcriptional activator protein echR
 gi|1177878|gb|AAA86840.1| EchR [Erwinia chrysanthemi]
          Length = 250

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 30/231 (12%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
            +    +    +  G   +      + +++  D ++ S++P + V     +       V+
Sbjct: 13  STIQNYLNRKLKSYGDLKY--AYLIMNKKKPTDVVIISNYPSEWVEIYRSNNYQHIDPVI 70

Query: 103 QRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                   P F    +             N++    + N Y  +  D       L  +F 
Sbjct: 71  LTAINKISP-FSWDDDLVISSKLKFSRIFNLSKEYDIVNGYTFVLHDPGNNLATLSFMFE 129

Query: 150 KGRI-----ILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + R      I+++   ++ +L         + Y+       +    +    + RE E L 
Sbjct: 130 ENRSGELEEIVQNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNIFSQRENEILY 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W S GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N++
Sbjct: 190 WASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|330954455|gb|EGH54715.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 240

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQAVGGALCRGLI 239


>gi|319787738|ref|YP_004147213.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466250|gb|ADV27982.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 213

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +        Q P  +    F      +         Y     
Sbjct: 49  DVVLMDMRMPVMSGLEALQTL--SQAGQLPPTIILTTFDDDQLVLAGLKAGARGYLLKDV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + ++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 107 SLEQLVGAIQTVASGGSLVQPAVTQR--LLSGLEH--MRNDFVSLDRPDPLTDRETEILR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|229059933|ref|ZP_04197307.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228719346|gb|EEL70950.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 211

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|212640627|ref|YP_002317147.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212562107|gb|ACJ35162.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 206

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 47/81 (58%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            AY+   F   DV   ++  LT  E+  L  I++ KT++ I+  L ISR TV +++++I+
Sbjct: 124 GAYEGFAFFPNDVDEEENISLTKMELVILKLIAQDKTNENISHSLNISRRTVEHHVSTII 183

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K    +R GA+  A++  I+
Sbjct: 184 KKLRVDSRVGAVVKAIKEGII 204


>gi|197344631|gb|ACH69663.1| LuxR family transcriptional regulator [uncultured bacterium]
          Length = 238

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 41/80 (51%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
              A       +   +   L+ RE+ECL W+++GK++  IA IL IS +TV  Y+   +R
Sbjct: 158 HVVAQKIIVPSMIESRQPRLSPRELECLRWVAQGKSNTVIADILKISDDTVAFYLRGALR 217

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    TR  A+A  V   ++
Sbjct: 218 KLGVSTRMQAVALCVTFGLI 237


>gi|152968160|ref|YP_001363944.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151362677|gb|ABS05680.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D R   L   V  +  G  LL P     L      +G  A     
Sbjct: 95  VYDALRAGAAGFLLKDARPAELVAAVRTVAGGEQLLAPAVTRRL------VGRFAERIRE 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +         +   LT REVE L  I+ G ++ EIA  L IS  TV  Y++ I+ K   +
Sbjct: 149 VAPGRGGAGAELAGLTPREVEVLGLIARGLSNAEIAAELVISHETVKTYVSRILAKLGLR 208

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A R  +V
Sbjct: 209 DRVQAVVLAYRTGLV 223


>gi|116073216|ref|ZP_01470478.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9916]
 gi|116068521|gb|EAU74273.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9916]
          Length = 227

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWI 197
           G+M +    + +  D +  +  +A       K      G +      +LT RE+E L  +
Sbjct: 120 GVMFVSSLAKGVDGDFIRSLAAIADGGNYYPKEVKAVAGYEAFEVLPDLTDREMEVLKVL 179

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S G ++ EI+  L IS  TV +++++I+ K   K R+ A+  A+R  I
Sbjct: 180 SSGMSNKEISESLCISSETVKSHVSTIIGKMGVKDRTQAVIKAIRAGI 227


>gi|240170339|ref|ZP_04748998.1| transcriptional regulator, LuxR family protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 528

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            R +    L  +   A   A      D    +   LT REVE L  ++ G ++ EIA  L
Sbjct: 431 RRQVQAGELDAVAAEAVLHA-AGHRADRSSLRPHGLTPREVEVLCLVARGASNKEIAAAL 489

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  T  N++     K     R GA  YA+RN +V
Sbjct: 490 VISEKTARNHVERTYAKIGVTNRIGASMYALRNGLV 525


>gi|323489900|ref|ZP_08095122.1| transcriptional regulatory protein degU (protease production
           enhancer protein) [Planococcus donghaensis MPA1U2]
 gi|323396407|gb|EGA89231.1| transcriptional regulatory protein degU (protease production
           enhancer protein) [Planococcus donghaensis MPA1U2]
          Length = 224

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 5/134 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L          +    ++   +  +  G   L PK   + R+ + E   L+  +  
Sbjct: 90  VTHALKTGALGYMLKEMDADAIIQAIKVVAKGGSYLHPK---VTRNLVMEFRRLSERENK 146

Query: 172 -MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             F   ++       LT RE E L  +++G+++  I   L IS  TV N+++SI++K   
Sbjct: 147 GSFHQTEIRRPYHL-LTKRESEVLQLLTDGQSNRVIGETLFISEKTVKNHVSSILQKMQV 205

Query: 231 KTRSGAIAYAVRNN 244
             R+ A+  A++N 
Sbjct: 206 NDRTQAVVTAIKNG 219


>gi|328882240|emb|CCA55479.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 226

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 3/147 (2%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V  RP  L    F              + +       A +   + ++     ++      
Sbjct: 77  VTHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRVVAAGEALLAPSVTR 136

Query: 161 EIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              L+A + A+      D    +   LT RE E L  I+ G ++ EIA  L ++  TV  
Sbjct: 137 R--LIADFAASRPAPRKDTTALRLNGLTPRETEVLELIARGLSNQEIADHLVLAEQTVKT 194

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I  ++ K   + R+ A+ +A  + +V
Sbjct: 195 HIGRVLAKLDLRDRAQAVVFAYESGLV 221


>gi|325920818|ref|ZP_08182719.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325548715|gb|EGD19668.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 213

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +          P  +    F      +         Y     
Sbjct: 49  DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + ++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 107 SLEQLVGAIRTVAGGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|182438916|ref|YP_001826635.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779572|ref|ZP_08238837.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178467432|dbj|BAG21952.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326659905|gb|EGE44751.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 229

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 10/176 (5%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRY 130
             P  ++  + + E D      +          RP  L    F              + +
Sbjct: 47  QHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLTTFDVDDYVYEALRAGASGF 106

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  A +   + ++     ++       +    A Q     +      +   LT RE
Sbjct: 107 LLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPSGATRGGQALRRHGLTPRE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I+ G ++ EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 167 SEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 222


>gi|146277748|ref|YP_001167907.1| autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555989|gb|ABP70602.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 233

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 6/144 (4%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR--IILRDRLWEIGL 164
           E F  VF    +    P G+            R  + +    P+     + R  + ++ +
Sbjct: 89  ERFRAVFFAAEDFGITPQGLTV--PVRGPYGDRGLLSVTRRCPRSDWDKLKRAAIGDLQV 146

Query: 165 LAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            A +  +     DV     +   L+ RE+E L W++ GK+  +I  ILGIS  TV  ++ 
Sbjct: 147 AAVHLHDAVMRSDVISRALRQPRLSTREIEVLQWVAAGKSQMDIGDILGISHRTVEVHLR 206

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S   K  T +   A+  A+   +V
Sbjct: 207 SAREKLGTLSTVQAVGRAIGLGLV 230


>gi|295400540|ref|ZP_06810518.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977443|gb|EFG53043.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 557

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 11/158 (6%)

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
            + Y +V QR       +  T+P+      G       + F V     G+M +  K    
Sbjct: 393 TEYYEDVCQRYFFTEEKLLETIPKLCETKFGTVME---IPFSVHEHMHGVMAVHMKHLEA 449

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKD--------FELTGREVECLTWISEGKTSDEI 206
            ++    +  L      + K  + H  K           LT RE++ L  + +G ++ EI
Sbjct: 450 AKEAEVYVTALIGIGTMIMKQNNYHGPKQQLNMDMLSERLTSREMDVLNLLVQGCSNREI 509

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  L IS +TV N+I +I +K     RS  IA   + N
Sbjct: 510 ADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 547


>gi|20804002|emb|CAD31579.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mesorhizobium loti R7A]
          Length = 241

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 22/185 (11%)

Query: 59  SHFLLVRWDLFQEQKLDSIV----SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           SH+L  R    Q +++D ++     S++PF             +  +  R  +LF     
Sbjct: 62  SHYL--RH---QYERIDPVIEWARCSEYPFQW------GPDFGHAGISTRQQQLFDEAAE 110

Query: 115 TLPENITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
                      +D R    ++TF   R+    + +  K    L     EI  +  +    
Sbjct: 111 FGICCGLTIPLVDRRGGVAAMTFAADRLDPTFLRVAEKYEQAL-----EIMAMCFHIGVR 165

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K           LT RE ECL W ++GK++ EI  ILGI   T   ++ +  +K   +T
Sbjct: 166 RKLSCGLAVDGVSLTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRT 225

Query: 233 RSGAI 237
           ++ A+
Sbjct: 226 KNQAV 230


>gi|53725659|ref|YP_102421.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           ATCC 23344]
 gi|121600864|ref|YP_993677.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           SAVP1]
 gi|126442199|ref|YP_001059696.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|126451641|ref|YP_001066980.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134277810|ref|ZP_01764525.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|217421088|ref|ZP_03452593.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226200000|ref|ZP_03795550.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237813089|ref|YP_002897540.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238562977|ref|ZP_00439585.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|254177786|ref|ZP_04884441.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|254184304|ref|ZP_04890894.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1655]
 gi|254199322|ref|ZP_04905688.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|254205635|ref|ZP_04911987.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|254261005|ref|ZP_04952059.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254296964|ref|ZP_04964417.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|254357791|ref|ZP_04974064.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|52429082|gb|AAU49675.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 23344]
 gi|121229674|gb|ABM52192.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei SAVP1]
 gi|126221692|gb|ABN85198.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
 gi|126225283|gb|ABN88823.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|134251460|gb|EBA51539.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|147748918|gb|EDK55992.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|147753078|gb|EDK60143.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|148026918|gb|EDK84939.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|157806879|gb|EDO84049.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|160698825|gb|EDP88795.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|184214835|gb|EDU11878.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1655]
 gi|217396500|gb|EEC36517.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225928056|gb|EEH24093.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237504732|gb|ACQ97050.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238521581|gb|EEP85031.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|254219694|gb|EET09078.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
          Length = 241

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           R+  +   A           +    +  LT REVE L W ++GKTS EI+ IL IS +TV
Sbjct: 152 RMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTV 211

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N ++ + + K  T  ++ A+  A    ++
Sbjct: 212 NFHVKNAILKLRTANKTAAVVRAAMLGLL 240


>gi|163744442|ref|ZP_02151802.1| transcriptional regulator, LuxR family protein [Oceanibulbus
           indolifex HEL-45]
 gi|161381260|gb|EDQ05669.1| transcriptional regulator, LuxR family protein [Oceanibulbus
           indolifex HEL-45]
          Length = 239

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             R I+ D ++   LL +         +        L+ RE E L W + GKT+ E A I
Sbjct: 145 YKRGIIADAIYLGCLLQSDLVAGIAGGEPGP----RLSRREKEVLKWAAVGKTAWETAQI 200

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +S +TVN+++ +   K     ++ A+A A+R  ++
Sbjct: 201 MTVSNSTVNHHLYNACAKLDVANKTHAVAKAIRAQLI 237


>gi|108804387|ref|YP_644324.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765630|gb|ABG04512.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 220

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          D     L   + ++  G  +L      I    + E+G L+   A 
Sbjct: 93  VFRGLRAGARGYILKDTPSEELAAAIEKVHRGEAVL---DGPITLKVISELGRLSKGPAG 149

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         L+ RE+E L  ++ G ++ EIA  L I+  TV N+I+SI+RK   +
Sbjct: 150 PQPGSG-------GLSEREMEVLRLVASGASNREIARALYITEGTVKNHISSILRKLGFR 202

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  YA+    +
Sbjct: 203 DRTQAALYALERGWI 217


>gi|331699942|ref|YP_004336181.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954631|gb|AEA28328.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 221

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 11/221 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +D          AL +   A   + V       +    + ++  P  ++  + +
Sbjct: 1   MIRVLVVDDQAMVREGFAALLD---AQPDMEVVGTAGDGRAALPVAATRHPDVVLMDIRM 57

Query: 93  SEKDKYYN---VLQRPTELFCPVFHT--LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            E D       +L +P      V  T  L + I            L    A   +  + +
Sbjct: 58  PEMDGLEAARLLLAQPDPPKVVVLTTFDLDDYIFDALAAGASGFLLKHAPATDLLHAVRV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
              G  +L   +    L+A + A      +      +   LT RE E L  ++ G ++ E
Sbjct: 118 VAAGEALLAPEVTRR-LIAHFVAARPDPAAAGPRPDRLAPLTDRETEVLGLVARGLSNTE 176

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L ++  TV  +++ I  K   + R+ A+  A    +V
Sbjct: 177 IADALVLAEQTVKTHVSRIFGKLGLRDRAQAVVVAYECGLV 217


>gi|156741561|ref|YP_001431690.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232889|gb|ABU57672.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 242

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 6/180 (3%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+    +V  D     +  + ++   K      R   +   V+    +           Y
Sbjct: 47  ERLSPDVVLVDINLPGLNGLEVARVIKRREP--RVGLIVISVYEDDEQLFQAIKVGAAAY 104

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFEL 186
            S       +   +  +     +I    + +  +         +      +        L
Sbjct: 105 SSKDVHPRDLVRMIREVARGKYLINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPL 164

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+ YA++   +
Sbjct: 165 TSREIEILDCIARGLSNKEIATQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224


>gi|328951621|ref|YP_004368956.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451945|gb|AEB12846.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 222

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 14/135 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170
           VF  +          D +   L   + R+  G +LL  +    I++D   +   L    A
Sbjct: 90  VFEAVKAGARGYLLKDAQAEELIDAIRRVHQGEVLLDGELAEQIIQDFRAKREALTTAPA 149

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                         ELT REV+ L  +++G T+ EIA  LG+S  TV N ++ I  K   
Sbjct: 150 -------------AELTEREVQILRLLAQGATNQEIADELGLSEKTVRNRLSEIFAKLHL 196

Query: 231 KTRSGAIAYAVRNNI 245
             R+ A  YA+R  +
Sbjct: 197 NNRTQAALYAIREGL 211


>gi|303263546|ref|ZP_07349469.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|302647319|gb|EFL77543.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
          Length = 211

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       ELT RE + L  
Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|294813520|ref|ZP_06772163.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|326442073|ref|ZP_08216807.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294326119|gb|EFG07762.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 252

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 5/156 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++  ++    L     L    F      +       + +         +   L  +   
Sbjct: 94  GVAATERLTAELPGCRVLALSTFDMDEHVVRALRAGASGFLPKDVSPEELTAALRTVSAG 153

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++    L    L+  + A    + +V       LT RE E L  I+ G  +  IA  L
Sbjct: 154 DAVVAPRLLTR--LIGTFVAPQRTTEEVRLD---GLTPRETEVLRLIATGLDNTGIAEEL 208

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GI   TV N+I S+  K   + R+ A+  A  + +V
Sbjct: 209 GIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLV 244


>gi|332669606|ref|YP_004452614.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338644|gb|AEE45227.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 224

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 6/166 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV---FHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   ++  D    +++        V   F              + +       A +   
Sbjct: 55  VRMPGVNGIDATARIVETHPATRVLVLTTFDLDEYAFAALRAGASGFLLKDAAPADLAAA 114

Query: 144 LMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           +  +     ++      R+ E+       A   +  D    +   LT REVE L  ++EG
Sbjct: 115 VRTVAGGEAVVSARVTRRMLELFAEHLPAAGADRGRDAPHPRLAGLTPREVEVLREVAEG 174

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L +S  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 175 LSNGEIADRLFLSEATVKTHVGRILAKLRVRDRVQAVVVAYETGLV 220


>gi|254424512|ref|ZP_05038230.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192001|gb|EDX86965.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 211

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 63/172 (36%), Gaps = 11/172 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR-- 141
            +    +   E    +       +L  P    L E I          C +          
Sbjct: 36  AEAKNGVEAVEMHALHQPDITLMDLRMPQMEGL-EAINRIREATPAACIIILTTYDTDED 94

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--------HWGKDFELTGREVEC 193
           I   L       +L+D   E    A  Q +  K Y             ++ +LT RE+E 
Sbjct: 95  IYRGLQAGARGYLLKDTTAEDLATAVRQVHHGKRYIPIEVGIRLTERIQESDLTDRELEV 154

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  ++EGK++ EIA  L IS  TV  +I +I+ K     R+ A+  A+R  I
Sbjct: 155 LGELTEGKSNLEIAKALSISEGTVKFHINNILSKFGVSDRTQAVITALRRGI 206


>gi|124265864|ref|YP_001019868.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124258639|gb|ABM93633.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 333

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F LTGRE E L W+++GKT+ +I  ILG S  TV+ ++  +  K   +TR+ A A A+
Sbjct: 268 FRLTGREAEVLHWVAQGKTNRDIGDILGTSPRTVHKHLEHVFAKLGVETRTSAAAMAL 325


>gi|332978068|gb|EGK14806.1| nitrate/nitrite response regulator protein NarL [Desmospora sp.
           8437]
          Length = 216

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 42/68 (61%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               +  LT RE++ L  + +G ++ EIA  L IS  TV  ++++I++K   K+RS AI 
Sbjct: 146 RGSNEDSLTPRELDVLNLMVKGLSNKEIAEQLFISDKTVKIHVSNILKKLRVKSRSQAII 205

Query: 239 YAVRNNIV 246
           YA+++ +V
Sbjct: 206 YAIQHELV 213


>gi|239831035|ref|ZP_04679364.1| Transcriptional activator protein solR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823302|gb|EEQ94870.1| Transcriptional activator protein solR [Ochrobactrum intermedium
           LMG 3301]
          Length = 238

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--------GLLAAYQANMFKSYDVHWGK 182
            S     A+   G++     G  +    +  +         +L            ++   
Sbjct: 115 ISQPCWAAQGVFGMLSFLRSGPALSSGEISMLRRQLQTVANMLHLAMYEHLDVPTMNCVS 174

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 175 EVNLTMREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 234

Query: 243 NNIV 246
             ++
Sbjct: 235 FGLL 238


>gi|239816122|ref|YP_002945032.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239802699|gb|ACS19766.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 302

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 40/82 (48%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R +    L E  LL A Q             +  LT RE E L+W+++GKT+ +I  ILG
Sbjct: 209 RNLGAAALGETMLLFAAQREGAAGKPSARLAEAALTPRETEVLSWLAKGKTNRDIGEILG 268

Query: 212 ISRNTVNNYIASIMRKTATKTR 233
            S  TVN ++  I  K   +TR
Sbjct: 269 TSPRTVNKHLEHIFEKLGVETR 290


>gi|213967475|ref|ZP_03395623.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301386436|ref|ZP_07234854.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058672|ref|ZP_07250213.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131192|ref|ZP_07257182.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213927776|gb|EEB61323.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 240

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LSEVERTISAEQKYLVSSLMPVLHSVARGLKFSSR---CLTLRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 200 SIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|322391513|ref|ZP_08064982.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145596|gb|EFX40988.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 210

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEVNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLNAGARGYMLKTAS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I ++            +   +    H     +LT RE + L  
Sbjct: 107 ADELLHAVRKVAAGEFAIEQE-----------VSKKVEYNRNHVELHEDLTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205


>gi|220907344|ref|YP_002482655.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863955|gb|ACL44294.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 209

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLL 147
            +   +    +LQ     +  V  T   +     G+      Y   +     +  G+  +
Sbjct: 64  EMGGVEATQAILQECPNAYIIVLTTYDGDEDIYRGLQAGARGYLLKSVSREELIDGIKQV 123

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +   + I  +       + A  A    S         +LT RE + L  + EGK++ EIA
Sbjct: 124 YAGRKYIPAE-------VGARLAERMSSP--------QLTERERQVLMLMCEGKSNQEIA 168

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + L IS  T+  ++  I+RK     R+ A+  A++  
Sbjct: 169 LTLQISEGTIKFHVNGILRKLDVCDRTQAVLVALKRG 205


>gi|29828772|ref|NP_823406.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29605877|dbj|BAC69941.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 220

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 2/128 (1%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANMFKSYDV 178
                  +   ++   +A    G ++   +  + L  R     IG  AA           
Sbjct: 92  GLALSAADDIGAVRNALAGGVKGYVVTGTRTNLGLPTRPGAAPIGSAAARMHRRPPGAPS 151

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A
Sbjct: 152 HPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVA 211

Query: 239 YAVRNNIV 246
            A+R  I+
Sbjct: 212 VALRTGII 219


>gi|329938503|ref|ZP_08287928.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329302476|gb|EGG46367.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 230

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 85/224 (37%), Gaps = 6/224 (2%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
             H P R  ++     +    S  +      E VG +       DL    + D +V  D 
Sbjct: 9   GPHGPIRVAVVDDQPLIRAGFSMVLAAAEDIEVVGEAENGAEALDLLDRVEAD-VVIMDI 67

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              ++  +  +E+       ++P  +         E+             L    A   +
Sbjct: 68  RMPVMDGIRATEELMR---REKPPGVLVLTTFDNDEDAFAALRAGAGGFLLKNAPAAEVV 124

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G + +   G  ++  R+    LL    A+     +    +   LT RE + L+ ++ G +
Sbjct: 125 GAIRVVAAGESVVAPRITR--LLLDQVADRLAPANGQSERLNVLTARERDVLSQVARGLS 182

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + E+A  L ++  TV  ++ ++M K   + R+ A+A+A  + +V
Sbjct: 183 NAEVAAELYVAEATVKTHLGNLMAKLHLRDRAQAVAFAYESGLV 226


>gi|309789860|ref|ZP_07684439.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308228164|gb|EFO81813.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 203

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           +R+ +     + A   ++         +  +LT RE E L  +  GKT+ +IA +L IS 
Sbjct: 111 IRNAMHGRATIDAQLLHVLTHQTDKAAQRPDLTNREREVLRLLVAGKTNHQIADLLKISP 170

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  +++SI+ K     R+ A   AV++ ++
Sbjct: 171 ATVRIHVSSILAKLGVNNRTEAAIIAVQHKLI 202


>gi|309789968|ref|ZP_07684544.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227988|gb|EFO81640.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 253

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 31/195 (15%)

Query: 62  LLVRWDLFQEQKLD--SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
           +LV  +L     LD    V   +P   V  +++ E D+               F+ L   
Sbjct: 60  MLVDLNLPGMSGLDLTRQVRRQYPSIGVVMLSMHESDEQA-------------FNALRAG 106

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                  D +         +  + ++    +G  ++ D + E   +A    + F++    
Sbjct: 107 AAAYRSKDVK--------PQALVDILRRVTRGEYVINDVVLEEPQVAKRVLSQFRNLPEA 158

Query: 180 WGKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              D          L+ RE+E L  I+ G ++ EIA  L IS  TV N+I+SI+RK +  
Sbjct: 159 TATDPAADFPIFTPLSEREIEVLERIAAGGSNKEIADSLSISTQTVKNHISSILRKLSLN 218

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+ +A+R   +
Sbjct: 219 DRTQAVLFALRRGWI 233


>gi|228985616|ref|ZP_04145769.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774011|gb|EEM22424.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 73

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 40/67 (59%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ Y
Sbjct: 4   ESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIY 63

Query: 240 AVRNNIV 246
           AVRN +V
Sbjct: 64  AVRNQLV 70


>gi|307944862|ref|ZP_07660200.1| ATP-dependent transcription regulator LuxR [Roseibium sp.
           TrichSKD4]
 gi|307772076|gb|EFO31299.1| ATP-dependent transcription regulator LuxR [Roseibium sp.
           TrichSKD4]
          Length = 240

 Score = 98.5 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEI 206
                 +L+DR  E   LA +     K   +H       LT RE+ECL W+S G  + E+
Sbjct: 141 SEHVDQVLQDREAEFHFLANFLHLRMKDVALHAHSSAPVLTRRELECLKWLSAGLRTAEL 200

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  +I +   K + KTR  A+A AV   ++
Sbjct: 201 ADKLAISGPTVEFHIKNAREKLSAKTREQAVARAVSLKLL 240


>gi|240142578|ref|YP_002967091.1| hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens
           AM1]
 gi|240012525|gb|ACS43750.1| Hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens
           AM1]
          Length = 265

 Score = 98.1 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 12/220 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSDWPF---DLVRCMALSE 94
           LD     ++    +T    A      R +L   +  +  +  S+ PF   D+V       
Sbjct: 44  LDGRAETSVGGRIITTVAPAWQETYARENLAAHDPCVRRVAESNSPFFWSDIVLPEDDRR 103

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG--- 151
            D     +    ++       +P ++    G+        F          ++ P+G   
Sbjct: 104 PDLTRMTMTAARDMGYYDGLVMPLHMADANGVRMLSSLSLFWADGSEDVRRVIGPRGPAV 163

Query: 152 -RIILRDRLWEIGLLAAYQANMFKSYDVH----WGKDFELTGREVECLTWISEGKTSDEI 206
            +++      ++  L   +A   +S        +G+  +LT REV+ L+W ++GKT+DE 
Sbjct: 164 VKMLAAAWAQKLSDLGEAEAKPVQSPAKVLTGLFGRPPKLTSREVDVLSWAAKGKTADET 223

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +VIL + R TV+ ++++  RK     ++ A+A AV   ++
Sbjct: 224 SVILALGRETVHTHLSNACRKLQASNKTHAVAMAVHRRLI 263


>gi|226355486|ref|YP_002785226.1| response regulator NarL [Deinococcus deserti VCD115]
          Length = 218

 Score = 98.1 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 14/135 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  L          +     L   V  +  G   L P               +A     
Sbjct: 93  IFALLEAGAAGYLLKNASEDDLLGAVRAVAAGESALHPS--------------VARKVLE 138

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F ++      + +L+ RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    
Sbjct: 139 RFSTHTTPTPPEDDLSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVG 198

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A+ + ++   +
Sbjct: 199 SRTEAVLHGIKRGWI 213


>gi|37223239|gb|AAQ90220.1| LuxR [Aliivibrio fischeri]
 gi|37223242|gb|AAQ90222.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 98.1 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 17/221 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
             ++ ++   D        +  + + +   ++L          K D  +  ++P    + 
Sbjct: 12  EKIIDKIKTCDNNKDINQCLSEMAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKY 71

Query: 90  MALSEKDKYYNVLQRPTELFCPV---------FHTLPENITPPAGMDN--RYCSLTFDVA 138
              +   KY  V+        P+               N+   A         S     A
Sbjct: 72  YDDAGLLKYDPVVDYSKSHHSPINWNVFEKKSIKKESPNVIREAQESGLITGFSFPIHTA 131

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVE 192
               G++      + I  D L+         +L++   N  K    H   D  LT RE E
Sbjct: 132 NNGFGMLSFAHSDKDIYTDSLFLHASTNVPLMLSSLVDNYQKINTTHKKSDSILTKREKE 191

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           CL W SEGK++ +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 192 CLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232


>gi|218289507|ref|ZP_03493735.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240375|gb|EED07557.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 210

 Score = 98.1 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
             +   + +   T D   +   +  +     +  R  L              +  D    
Sbjct: 96  LASAGADGFLPKTVDPTHLLAAIRQVAAGRVVFDRAML-----------KALQEPDAEEA 144

Query: 182 KDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K   +LT RE + L  +++G ++ EIA  L IS  TV  ++  I  K   + R+ A   A
Sbjct: 145 KRLAQLTPRESQILRQVTKGLSNKEIADRLQISERTVKAHLQHIFDKLGVQDRTSAAVLA 204

Query: 241 VRNN 244
           +R+ 
Sbjct: 205 IRHG 208


>gi|323139012|ref|ZP_08074072.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242]
 gi|322395766|gb|EFX98307.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242]
          Length = 267

 Score = 98.1 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 85/233 (36%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           DL+ R+   D   + +  +   T   G  +      ++        ++S  +  +  +  
Sbjct: 20  DLIDRLARADRVEAASDIITGFTNAWGLHNVAYAALNMPSPGAARPLLSMTYSVEWQKHY 79

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDNRYCSLTFDVARIRI 142
           A S       +++       P+  +  +   P           +D     ++  +     
Sbjct: 80  AQSGYVDIDPIVRSGLGGILPIDWSEIDRGDPIIRKFFGEAQELDVGANGMSIPIRGRHG 139

Query: 143 GLMLLFPKG-------RIILRDRLWEIGLLA-AYQANMFKSY-DVHWGKDFELTGREVEC 193
              L            R I RD + ++ ++A  + A   +S  ++    D  L  RE  C
Sbjct: 140 EFALFTVTSNENALEWRAIRRDLIRDLMVVAWNFHAAALRSCGELAEPGDVHLPLREASC 199

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKT +EI  IL IS +TV  ++ S   +  T   +  +A A+   ++
Sbjct: 200 LRWKALGKTDEEIGRILVISPHTVRFHLESARARLNTANTTHTVAKALALGLI 252


>gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002]
 gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002]
          Length = 232

 Score = 98.1 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 24/184 (13%)

Query: 83  PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTL-----PENITPPAGMDNRYCSLT 134
           P  ++  + + + D Y     + + P     PV          + I       + Y    
Sbjct: 50  PDLVISDIMMPQVDGYQFLGQLREDPRFKTLPVIFLTARGMTGDRIQGYQAGCDAYLPKP 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDR-------------LWEIGLLAAYQANMFKSYDVHWG 181
           F+   +   +  L  +   I   +             L EI      Q  +  +      
Sbjct: 110 FEPEELEAIVKNLLTREAAIAEQQDGGGSNLEGIAQDLREIKQFLGQQNQLVTTPPPLK- 168

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+
Sbjct: 169 --IDLTPREQSVLDLVAQGLMNKEIAKELETSVRNVEKYVSRLFSKTGTNSRTELVRYAL 226

Query: 242 RNNI 245
           ++ +
Sbjct: 227 KHGL 230


>gi|290961118|ref|YP_003492300.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260650644|emb|CBG73760.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 215

 Score = 98.1 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R  +G  +  P    ++   L E   LA+ 
Sbjct: 82  HADVLEAVKSGATGYLLKSASTEELIDAVRRTAVGDPVFTPGLAGLV---LGEYRRLASE 138

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    +      K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 139 PA---PAPGADEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 196 QLHNRVELVRYAIERGL 212


>gi|257057262|ref|YP_003135094.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587134|gb|ACU98267.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 223

 Score = 98.1 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 10/161 (6%)

Query: 89  CMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            + +   D       +  +  ++   +  +  E       + N         A    G  
Sbjct: 66  DLVMPRMDGVLVTSRITSQYPDVRVVILTSFGELERIQGALANGASGYLLKSA----GPD 121

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    +   RD ++    +A        S     G    LT RE + L  I+ G ++ E
Sbjct: 122 EVVAAIQAAARDEMFLDPAVARRLTRQMVSPPTGVGA---LTERERDVLILIANGYSNKE 178

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS  TV  +++SI+RK    +R+ A   AVR  +V
Sbjct: 179 IADELVISERTVRTHVSSILRKLRLSSRTQAALVAVREGLV 219


>gi|315271266|gb|ACO45472.2| putative response regulator, NarL [Deinococcus deserti VCD115]
          Length = 231

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 14/135 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  L          +     L   V  +  G   L P               +A     
Sbjct: 106 IFALLEAGAAGYLLKNASEDDLLGAVRAVAAGESALHPS--------------VARKVLE 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F ++      + +L+ RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    
Sbjct: 152 RFSTHTTPTPPEDDLSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVG 211

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A+ + ++   +
Sbjct: 212 SRTEAVLHGIKRGWI 226


>gi|290963157|ref|YP_003494339.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260652683|emb|CBG75816.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 231

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 2/146 (1%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V+ RP  L    F              + +      VA +   + ++     ++      
Sbjct: 81  VVHRPRVLMLTTFDIDDYVYEALHAGASGFLLKDAPVAELVQAVRVIAAGDALLAPSVTR 140

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              L+                +   LT RE E L+ +++G+++ EIA  L ++  TV  +
Sbjct: 141 R--LIEDMARRRPAPPGAARLRLNGLTPREAEVLSLVAQGQSNTEIAARLVVAEQTVKTH 198

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +  ++ K   + R+  + +A  + +V
Sbjct: 199 MTRLLAKLGARDRAQLVVFAYESGLV 224


>gi|158333709|ref|YP_001514881.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158303950|gb|ABW25567.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 209

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I+EG+++ EIA  L IS  TV N++ SI+++   + R+ A   A
Sbjct: 148 ELTPRETEVLALIAEGQSNREIAEALYISERTVKNHVNSILKRLNVRDRTQAAILA 203


>gi|23100277|ref|NP_693744.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778509|dbj|BAC14778.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 210

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE E L  +++GK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA +
Sbjct: 146 HEQLTEREKEILLLMAKGKSNQEIANELFIALKTVKVHVSNILGKLEVHDRTQAVIYAFQ 205

Query: 243 NNIV 246
           N +V
Sbjct: 206 NKLV 209


>gi|298249284|ref|ZP_06973088.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547288|gb|EFH81155.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 216

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 13/134 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  +          D     L   + +   G +++ P                A     
Sbjct: 93  IFPAIRAGALSYLLKDIGLPDLADAIRKAACGEVVMHPHIA-------------ARVVQE 139

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +  +         +L+ RE E L  I+EG ++  IA  L +S  TV +++ +I+ K    
Sbjct: 140 LDGASHPDMASFAQLSEREREVLRLIAEGLSNAAIADRLVLSEKTVKSHVRNILGKLHLV 199

Query: 232 TRSGAIAYAVRNNI 245
            R+ A  +A R  +
Sbjct: 200 DRTQAAIFAWRQGL 213


>gi|228996994|ref|ZP_04156626.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
 gi|228762735|gb|EEM11650.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
          Length = 191

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L+    R +  + +    + A     +            EL+ RE+E L  I+ G T+ E
Sbjct: 83  LVETVRRGVQGESIMHPRVAARVVNEIRAMKQASPDPFSELSERELEVLRLIARGLTNAE 142

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA  L IS  TV  ++++I+ K     R+ A  +A    
Sbjct: 143 IAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFAWEQG 181


>gi|297194566|ref|ZP_06911964.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152332|gb|EDY66387.2| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 227

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 12/175 (6%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYC 131
            P  ++  + + E D      +          RP  L    F              + + 
Sbjct: 48  HPDVVLMDVRMPEMDGLAAARELLNPPTAVVHRPKVLMLTTFDVDDYVYEALRAGASGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A +   + ++     ++         L+A + A           +   LT RE 
Sbjct: 108 LKDAPPADLIAAVRIVAAGEALLAPSVTRR--LIADFAAQRPAPRRDPSLRLNGLTPRET 165

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I+ G ++ EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 166 EVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 220


>gi|271498689|ref|YP_003331714.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342244|gb|ACZ75009.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586]
          Length = 250

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 86/231 (37%), Gaps = 30/231 (12%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
            +    +    +  G   +      + +++  D ++ S++P + V     +       V+
Sbjct: 13  STIQNYLNRKLKSYGDLKY--AYLIMNKKKPTDVVIISNYPSEWVEIYRNNNYQHIDPVI 70

Query: 103 QRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                   P F    +             N++    + N Y  +  D A     L  +F 
Sbjct: 71  LTAINRISP-FSWDDDLVISSKLKFSRIFNLSKEYDIVNGYTFVLHDPANNLATLSFMFE 129

Query: 150 KGRI-----ILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + R      I+++   ++ +L         + Y+       +    +    + RE E L 
Sbjct: 130 ENRSGELEEIVQNNKEKLQMLLISAHEKLTSLYREMSKNRNNSKSQEPNLFSQRENEILY 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W S GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N++
Sbjct: 190 WASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|51894297|ref|YP_076988.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857986|dbj|BAD42144.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 221

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  L          D  Y  L+  +  +  G  LL P+   I    L E   L++  A+
Sbjct: 94  IFEGLAAGARGYLLKDAEYDELSQAIRTVAAGESLLQPQ---ITTRVLKEFSRLSSMAAS 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K+  +       LT RE E L  ++ G ++ +IA  L I + TV +++ SI  K   +
Sbjct: 151 RPKARPLVE----PLTERETEVLRLMASGASNQDIAEKLFIGQGTVKHHVRSIFAKLGAR 206

Query: 232 TRSGAIAYAVRNNIV 246
            R  AI  A   N+V
Sbjct: 207 DRVHAILLAQELNLV 221


>gi|17228408|ref|NP_484956.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130259|dbj|BAB72870.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 225

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 62/170 (36%), Gaps = 14/170 (8%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVF---HTLPENITPPAGMDNRYCSLTFD 136
           P  +V  + L   D       +     E    +     T  E I   +   + YC     
Sbjct: 64  PDLVVMDIGLPRIDGIAATQQIKAALPETHVVMLTSHKTETEIIAALSSGADAYCIKGAS 123

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           + R+   +         +          +A    +  K      G    L+GRE+E L  
Sbjct: 124 IERLLNAIAAAVDGATYLDP-------QIARQVIDHLKPPSAK-GNTANLSGRELEVLKL 175

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EG ++ EIA  L +S NTV  ++  IM K A   R  A   A+R+ +V
Sbjct: 176 MVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSGLV 225


>gi|328951086|ref|YP_004368421.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451410|gb|AEB12311.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 216

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 14/135 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170
           VF  +          D +   L   + R+  G +LL  +    I++D   +   L    A
Sbjct: 90  VFEAVKAGARGYLLKDAQAEELIDAIRRVHQGEVLLDGELAEQIIQDFRAKREALTTAPA 149

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                         ELT REV+ L  +++G T+ EIA  LG+S  TV N ++ I  K   
Sbjct: 150 -------------AELTEREVQILRLLAQGATNQEIADELGLSEKTVRNRLSEIFAKLHL 196

Query: 231 KTRSGAIAYAVRNNI 245
             R+ A  YA+R  +
Sbjct: 197 NNRTQAALYAIREGL 211


>gi|159044364|ref|YP_001533158.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912124|gb|ABV93557.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 265

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 5/174 (2%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            D +   D    L +  A+         L R  E          E   P    D     +
Sbjct: 88  DDHLYEIDPIPALAQRRAVPFLWSEVAELTRLAEEQAAFL----ERSMPARVGDGVAIQV 143

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-NMFKSYDVHWGKDFELTGREVE 192
                R     M    + R +   +L E  L++        +  +     +  L+ RE E
Sbjct: 144 FGPNMRHGYVGMGFGDRPRDVTAPQLAEYQLVSQLMHLRACRLIEERNRSEIALSARETE 203

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W++ GK+   IA ILG+S +TV+  +  I RK     R+ AI  A+   +V
Sbjct: 204 VLGWMARGKSKTVIADILGLSPHTVDTLVRRIFRKLEVFDRTAAILKAINLGLV 257


>gi|329114860|ref|ZP_08243616.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001]
 gi|326695757|gb|EGE47442.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001]
          Length = 299

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               K   LT RE E L WIS+GKT+ +IA IL IS  TVN ++     K   + R+ A 
Sbjct: 231 ASLQKRLNLTAREAEVLFWISKGKTNRDIAEILSISHRTVNKHLEQAYVKIGVENRASAT 290

Query: 238 AYAVRNNIV 246
           A  ++  +V
Sbjct: 291 ARVLQALLV 299


>gi|302561410|ref|ZP_07313752.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302479028|gb|EFL42121.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 188

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 9/158 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLL 147
            M   +  +    L+ P  +      T    + P        Y     D   +   +  +
Sbjct: 37  GMDGVDALRRLRELEHPARVLVVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSV 96

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++  +      LL+  +A          G+   LT RE E L  I++G+ + EIA
Sbjct: 97  HAGHVLLQAE--VAGALLSQEEA------GPGTGRAGALTEREREVLGLIADGRANREIA 148

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 149 RALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGV 186


>gi|118465118|ref|YP_884392.1| two-component system response regulator [Mycobacterium avium 104]
 gi|118166405|gb|ABK67302.1| two-component system response regulator [Mycobacterium avium 104]
          Length = 218

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 11/211 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  +        F++V      ++ + + V++  P  +V  + +   D  
Sbjct: 13  VDDQDLVRSGLRRILRR--KDGFVIVAECADGDE-VPAAVAAHRPDVVVMDLRMRRVDGI 69

Query: 98  --YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                +  RP  L    F+               +         +   +  +      + 
Sbjct: 70  EATRRLGGRPPVLALTTFNEDELLSGALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLD 129

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                 +  L  Y      +   H     ELT RE + LT I +G ++ EIA  L IS  
Sbjct: 130 PAVTSRV--LTTY---RKAAPGPHGAAIAELTTRERDVLTLIGKGLSNSEIADELCISGV 184

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV ++I  I  K   + R+ AI YA  N IV
Sbjct: 185 TVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215


>gi|219848256|ref|YP_002462689.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219542515|gb|ACL24253.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 236

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+ +  IV  D     +  + ++   K      R   +   V+    +           +
Sbjct: 49  ERLMPDIVLVDINLPGLNGLEVARVIKRREP--RTGIIVLSVYEDDDQLFQAIKVGAAAF 106

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FE 185
            S       +   +  +     +I    L    + AA   + F+       +D       
Sbjct: 107 TSKDISPDELVQMIREVARGRYLINDAVLARPNV-AARVLHQFRELAATEEEDSASLFAP 165

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+  A++   
Sbjct: 166 LTSREIEILDCIARGLSNKEIANELSISGQTVKNHITSILSKLQVNDRTMAVIVAIKKGW 225

Query: 246 V 246
           +
Sbjct: 226 I 226


>gi|70726072|ref|YP_252986.1| two-component response regulator [Staphylococcus haemolyticus
           JCSC1435]
 gi|88952437|sp|Q4L7J5|VRAR_STAHJ RecName: Full=Response regulator protein vraR
 gi|68446796|dbj|BAE04380.1| two-component response regulator [Staphylococcus haemolyticus
           JCSC1435]
          Length = 209

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 13/156 (8%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150
             +    + +    +   +  +  E+      +D   + Y   T   + I   +   F  
Sbjct: 63  GVEATTQIKKDLPHIKVVMLTSFIEDKEVYRALDAGVDSYILKTTSASDIADAVRKTFNG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +   + L ++      +  M K  +++      LT RE+E L  I++G ++ EIA   
Sbjct: 123 ESVFEPEVLVKM------RNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 213

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 82/207 (39%), Gaps = 20/207 (9%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQ 103
             +  + +Y+    + +      +E     ++++  P  +V  + + E D Y     V Q
Sbjct: 18  NLLLLVKDYLEYQGYQVTTAGNGREALD--LLTTTVPDMIVCDIMMPEMDGYAFIEQVRQ 75

Query: 104 RPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
            P   + PV     +      +       + Y +  F+   +   +     +   +L+  
Sbjct: 76  NPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQ-- 133

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                        +  +  V   +D ELT  E + +  +++G  + EIA  L +S+ TV 
Sbjct: 134 --------HNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLANREIADHLKVSQRTVE 185

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
           +++++++ KT    R+    +A++ +I
Sbjct: 186 SHVSNMLNKTGLHNRTELARWAIQKSI 212


>gi|302545751|ref|ZP_07298093.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463369|gb|EFL26462.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 226

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 1/146 (0%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V  RP  L    F              + +       A +   + ++     ++      
Sbjct: 77  VTHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRVVAAGEALLAPSVTR 136

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
            +    A Q    +  +    +   LT RE E L  I+ G ++ EIA  L ++  TV  +
Sbjct: 137 RLIAEFARQRPAPRR-NSSLLRRSGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTH 195

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           I  ++ K   + R+ A+ +A  + +V
Sbjct: 196 IGRVLAKLGLRDRAQAVIFAYESGLV 221


>gi|257054106|ref|YP_003131938.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256583978|gb|ACU95111.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 221

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRI-GLMLLFP 149
           L        +  R  E+   V  T  ++ +    +       LT D  R  I   +    
Sbjct: 64  LDGVAATREIRNRHPEVAVLVLTTYSDDDSIRDALGAGAQGYLTKDAGRAEIHAALRAAV 123

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G+      +    + A  +     S          LT RE E L  I  G ++ EIA  
Sbjct: 124 TGQATFTTAVSRRLVTALTEQRPRPSEPTPDPSATTLTAREREILGLIGAGLSNAEIAAR 183

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+ +TV  +I +   K   + R+GA+ YA +  +V
Sbjct: 184 LFIAESTVKTHINNAFAKIGVRNRAGAVRYAYQTGLV 220


>gi|50955380|ref|YP_062668.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951862|gb|AAT89563.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 207

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  D        LT RE+E L  ++ G+T+ ++   L +S  TV  ++  I  K    TR
Sbjct: 133 RLMDRMRAPQESLTPREIEVLALLATGRTNRQVGERLFVSETTVKTHVNHIFTKLGVDTR 192

Query: 234 SGAIAYAVRNNIV 246
           + A++ A++  ++
Sbjct: 193 AAAVSRAMKEGLI 205


>gi|156741214|ref|YP_001431343.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM
           13941]
 gi|156232542|gb|ABU57325.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii
           DSM 13941]
          Length = 204

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 15/173 (8%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D I+++D          L+E+ +Y  +L         V   LP         D     L
Sbjct: 45  IDVILAADESVLADADQVLAEEPRYAALLLSDDPRQADVLRGLPLTAWGILTHDVGAAEL 104

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              +  +  GL++L P     L  RL +            +   V       LT RE + 
Sbjct: 105 AAALHAVAQGLIVLAPN----LAARLLQA-----------RQSPVEEPTGEPLTARERDV 149

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +S+G ++ +IA  L IS +TV  +++S+  K    +R+ A+    R  I+
Sbjct: 150 LELVSQGLSNKQIAQKLHISEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGII 202


>gi|326408213|gb|ADZ65278.1| Transcriptional activator, LUXR family [Brucella melitensis M28]
 gi|326537928|gb|ADZ86143.1| Transcriptional activator protein solR [Brucella melitensis M5-90]
          Length = 171

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ ++      +M++  DV       
Sbjct: 48  ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 107

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 108 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 167

Query: 243 NNIV 246
             ++
Sbjct: 168 FGLL 171


>gi|282900664|ref|ZP_06308606.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194464|gb|EFA69419.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 231

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 84/216 (38%), Gaps = 22/216 (10%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           ++++Y+    + ++  D    +   SI+  +    +V  + +   + Y     V Q    
Sbjct: 17  SISDYLELCGYSVLTAD--DGENALSIIQQEHLDLMVTDIIMPRMNGYELVRRVRQNIEF 74

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV          E I       + Y    F++  +   +  L  + +II  +     
Sbjct: 75  RLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELSAAVRNLLERSQIIQSEYCLSS 134

Query: 163 GLLAAY--------QANMFKSYDVHWGKD----FELTGREVECLTWISEGKTSDEIAVIL 210
            +   +         +      +     D      ++ RE E L  ++ G ++ EI   L
Sbjct: 135 QISGGFPPDDKTRPVSPSIPRTETLNHPDSHILMSISTREREVLELLTHGLSNAEIGSKL 194

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  TV  Y++S++RKT++  R+  + +A+++ IV
Sbjct: 195 YLSPRTVEKYVSSLLRKTSSNNRAELVRFAIKHGIV 230


>gi|256014910|ref|YP_003104919.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915]
 gi|255997570|gb|ACU49257.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915]
          Length = 259

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 8/144 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK------GRIILRDRLWEI 162
            CP    L  +     G+ N + +++    +   G  +   +       + + R R   +
Sbjct: 109 ICPAVAELLHDAEK-HGLGNLFIAVSACNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLL 167

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L       +    D +      LT REV+CL W + GKT  EIA IL I+R TV  Y+ 
Sbjct: 168 SLAGIIHGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQ 226

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +   K     R+ A+A A+   I+
Sbjct: 227 NAKIKLNCSNRTSAVATALSLGII 250


>gi|171912672|ref|ZP_02928142.1| two-component response regulator [Verrucomicrobium spinosum DSM
           4136]
          Length = 210

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E + RE E L  +++G+++ EIA +LG+S  TV  ++++++ K   + R+ A+  A+R  
Sbjct: 147 EPSPREREVLAQMAKGRSNKEIASVLGLSEETVKRHVSNVLEKLGAQDRTQAVTEAIRRG 206

Query: 245 IV 246
           ++
Sbjct: 207 LL 208


>gi|256390165|ref|YP_003111729.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356391|gb|ACU69888.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 221

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170
           V+  L    +     D R   L   V  +  G  LL P   R ++ D      + +   A
Sbjct: 86  VYDALYAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVTRRLIAD------VTSRRPA 139

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                      +   LT RE E L  ++ G ++ EIA  L +S +TV  ++++I+ K   
Sbjct: 140 RAGDPGAAPSARLDALTPRERETLLLMARGASNAEIAARLFVSEHTVKTHVSNILMKLGL 199

Query: 231 KTRSGAIAYAVRNNIV 246
           + R  A+ +A  + +V
Sbjct: 200 RDRVHAVIFAYDSGLV 215


>gi|295835904|ref|ZP_06822837.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|333023773|ref|ZP_08451837.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|295825771|gb|EFG64471.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|332743625|gb|EGJ74066.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 219

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVH 179
                  +   ++   +A    G ++   +  + L  R     L  A+           H
Sbjct: 92  GLALSAADDIGAVRNALAGGVKGYVVTGTRTNVGLPGRPGAAQLGAASRTHRRPPGTPSH 151

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A 
Sbjct: 152 PGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAV 211

Query: 240 AVRNNIV 246
           A+R  I+
Sbjct: 212 ALRTGII 218


>gi|291514919|emb|CBK64129.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Alistipes shahii WAL 8301]
          Length = 212

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 9/163 (5%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F +         ++          +   +F                +     D+  +   
Sbjct: 57  FAMPGLDGAQTTERALAQRPDLKIITLSMFGEESYYSRMVEAGARGFLLKDSDIGDVIEA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G            LL++    M    D     D +L+ RE E L  +  G ++
Sbjct: 117 VETVAAGGSYFSP------QLLSSLTGRMRTREDAA---DEQLSSREREILVAVCRGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS+ TV+ + A+I+ KT  K  +  + YA+RN IV
Sbjct: 168 QEIADELFISKRTVDKHRANILEKTGCKNTASLVVYAIRNGIV 210


>gi|256785092|ref|ZP_05523523.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289768986|ref|ZP_06528364.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289699185|gb|EFD66614.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           LF   R   + R      +A+   +  ++      +   L+ RE E L  ++ G ++ EI
Sbjct: 126 LFTAVRAAAQGRTVLSPAVASRLVSAVRAPKTPGAEP--LSAREREVLALVARGTSNKEI 183

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++  +  K     R+ A+A A    I+
Sbjct: 184 ARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223


>gi|21223813|ref|NP_629592.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7105984|emb|CAB76009.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 224

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           LF   R   + R      +A+   +  ++      +   L+ RE E L  ++ G ++ EI
Sbjct: 126 LFTAVRAAAQGRTVLSPAVASRLVSAVRAPKTPGAEP--LSAREREVLALVARGTSNKEI 183

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++  +  K     R+ A+A A    I+
Sbjct: 184 ARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223


>gi|108803013|ref|YP_642950.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764256|gb|ABG03138.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 212

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 16/176 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +  S  P  ++  + + E D       +L   ++    V  T   +      ++     
Sbjct: 46  ELARSLRPDLVLMDLRMPEMDGVAATERILAELSQTRVLVLTTYDSDADILRAVEAGASG 105

Query: 133 LTFDVARIRIGLMLLFPKGRII--LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                      L+   P+  +   +R  +     L    A+      V    +  L+GRE
Sbjct: 106 ----------YLLKDAPREELFAAIRAAMAGESPLDPAVASRLMRR-VRTPPENALSGRE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  +++G ++ EIA  L IS  TV  ++  I  K     R+ A+  A++  I+
Sbjct: 155 IEVLDLVAQGASNREIARQLWISETTVKTHLLHIYEKLGVADRTAAVTAAIKRGII 210


>gi|258541258|ref|YP_003186691.1| LuxR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632336|dbj|BAH98311.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635393|dbj|BAI01362.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638448|dbj|BAI04410.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641502|dbj|BAI07457.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644557|dbj|BAI10505.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647612|dbj|BAI13553.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650665|dbj|BAI16599.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653656|dbj|BAI19583.1| two component response regulator LuxR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 299

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT RE E L WI++GKT+ +IA IL IS  TVN ++     K   + R+ A A  +
Sbjct: 235 KRLNLTAREAEVLFWIAKGKTNRDIAEILSISHRTVNKHLEQSYIKIGVENRAAATARVL 294

Query: 242 R 242
           +
Sbjct: 295 Q 295


>gi|298244698|ref|ZP_06968504.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552179|gb|EFH86044.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F T+          +     LT  + +   G ++L P               +AA    
Sbjct: 93  IFPTIRAGALSYLLKEAALSELTEAIRKAARGEVVLHPH--------------VAARVLQ 138

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             +  +    K +  L+ RE E L WI++G ++ +IA  L IS  TV +++ +I+ K   
Sbjct: 139 ELRGTNKDASKLYATLSEREREVLNWIAQGLSNGQIAARLVISERTVKSHVNNILGKLQV 198

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A  Y  R  +V
Sbjct: 199 SDRTQAAIYVWREGMV 214


>gi|269793700|ref|YP_003313155.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269095885|gb|ACZ20321.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 226

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + +R       +    V ++ P   V  +   + D+Y              F  L    +
Sbjct: 53  MDIRMPGVDGIEATRRVVAEHPAVRVLVLTTFDVDEYA-------------FAALRAGAS 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                  R   L   +  I  G  ++ P+    + D L+   L     A+  +  +V   
Sbjct: 100 GFLLKSARPEELADAIRTIASGSSVVAPRVVRRMLD-LFAPHLPGGDDASPARPDEVAPV 158

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +LT RE + L  ++EG ++ EIA  L +S  TV  ++ +++ K   + R  A+  A 
Sbjct: 159 LR-DLTPRETDVLRAVAEGLSNAEIAEQLVLSTTTVKTHVGNMLAKLGVRDRVQAVILAY 217

Query: 242 RNNIV 246
            + +V
Sbjct: 218 ESGLV 222


>gi|306841076|ref|ZP_07473798.1| regulatory protein LuxR [Brucella sp. BO2]
 gi|306846307|ref|ZP_07478868.1| regulatory protein LuxR [Brucella sp. BO1]
 gi|306273302|gb|EFM55171.1| regulatory protein LuxR [Brucella sp. BO1]
 gi|306288886|gb|EFM60191.1| regulatory protein LuxR [Brucella sp. BO2]
          Length = 258

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 64/197 (32%), Gaps = 30/197 (15%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132
           D  V    P   V   +         V     +   P +      I      D   C   
Sbjct: 58  DLTVLMTLPATWVARYSSKNYFAVDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 113

Query: 133 --LTFDVARIRIGLMLLFPKGR---------------------IILRDRLWEIGLLAAYQ 169
             L  D  +  +G + +    R                      + R R   + L     
Sbjct: 114 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVDEDRTQFLARMRPRLLSLAGIIH 173

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             +    D +      LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K  
Sbjct: 174 GTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLN 232

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A+A A+   I+
Sbjct: 233 CSNRTSAVATALSLGII 249


>gi|269837581|ref|YP_003319809.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786844|gb|ACZ38987.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 211

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 32/177 (18%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFC-------------PVFHTLPENITPPAGMDNR 129
           P  ++  + + E D    V Q   E+                + H +    T     D  
Sbjct: 50  PDVVLMDLRMPEMDGAAAVAQIRAEMPDVHVLVLTTYDSDEDILHAVEAGATGYLLKDTT 109

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
              L   +     G  LL P     L  RL +                    +   LT R
Sbjct: 110 REDLFRAIRAAAAGQPLLAPSVAARLMARLNQP-------------------RQEPLTPR 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ L  +++G ++ EIA  L IS+ TV +++  I  K     R+ A+  A+   I+
Sbjct: 151 EIDVLRLVAQGASNKEIAARLSISQATVKSHLIHIFDKLDVDDRTAAVTVALERGII 207


>gi|254414589|ref|ZP_05028354.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420]
 gi|196178437|gb|EDX73436.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420]
          Length = 217

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
             A   + YC    +   + + L  +        +    EI      Q            
Sbjct: 92  LIAAGASGYCLKGIEAEVLILALRSVAAGASWWDKTSTNEIRAAVGEQTPEVAQSTEESS 151

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  LT RE E L  I+ GK++ EI  +L I+  TV  ++ +I++K   + R+ A   A+
Sbjct: 152 AN-PLTQREQEILALIAAGKSNQEIGELLHIATGTVRVHVHAILQKLDVRDRTQAAVLAI 210

Query: 242 RNNIV 246
           +  +V
Sbjct: 211 QKGLV 215


>gi|157467980|gb|ABV57378.1| ExpR [Erwinia chrysanthemi]
          Length = 250

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 28/230 (12%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
            +    +    +  G   +      + +++  D ++ S++P + V     +       V+
Sbjct: 13  STIQNYLNRKLKSYGDLKY--AYLIMNKKKPTDVVIISNYPSEWVEIYRSNNYQHIDPVI 70

Query: 103 QRPTELFCPVF------------HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                   P               +   N++    + N Y  +  D       L  +F +
Sbjct: 71  LTAINKISPFSWDDNLVISSKLKFSRIFNLSKEYDIVNGYTFVLHDPGNNLATLSFMFEE 130

Query: 151 GRIILRDRLWEI--------------GLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            R    + +                  L + Y+       +    +    + RE E L W
Sbjct: 131 NRSGELEEIVHNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNLFSQRENEILYW 190

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N++
Sbjct: 191 ASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|159897838|ref|YP_001544085.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890877|gb|ABX03957.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 206

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +  L+   P+  +    RL   G   L    A+             ELT RE E L  +
Sbjct: 98  AQGYLLKGAPRDELFAAIRLIHAGGSTLHPLIASKLLRQVQRDTTLVELTPREHEVLQHL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  + +IA  L I+  TV  ++ SI +K     R+ A+A A    ++
Sbjct: 158 AQGFANKQIAYQLNITERTVKFHLNSIFQKLGAHNRTEAVAIAYERQLI 206


>gi|148658361|ref|YP_001278566.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570471|gb|ABQ92616.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 226

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 61/181 (33%), Gaps = 13/181 (7%)

Query: 72  QKLDSIVSSDWPFDLVR-CMALSEKDK-----YYNVLQRPTELFCPVFHTLPENITPPAG 125
             LD +  S  P DLV   + +   D          L     +        P+ +     
Sbjct: 50  AALDFV--SRHPVDLVMMDLQMPGMDGIEATRRIKALCPAIRVIMVTVQAKPDALMDALR 107

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                  L     R  IG +    +G   L   L  +       A+     +        
Sbjct: 108 AGVAGYLLKDASRREIIGAVRQVLRGDAFLNPDL--VMQTLRRLASATPDDEPPVE---P 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + +GKT+ EIA  L IS  TV  ++  I+ K     R+ A   A+   +
Sbjct: 163 LTAREQQVLKLLMQGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGL 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|333026466|ref|ZP_08454530.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746318|gb|EGJ76759.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 212

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 3/146 (2%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V  RP  L    F              + +       A +   + ++     ++      
Sbjct: 65  VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTR 124

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
               L A  A    +      +   LT RE E LT ++ G+++ EIA  L ++  TV  +
Sbjct: 125 R---LIADFARQRPAPGKPALRLKALTERETEVLTLVARGRSNAEIAESLVLAEQTVKTH 181

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ ++ K   + R+ A+ +A  + +V
Sbjct: 182 VSRVLTKLGLRDRAQAVVFAYESGLV 207


>gi|326381529|ref|ZP_08203223.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199776|gb|EGD56956.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 209

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++GK++ EIA  L +S  TV  ++++++ K   + R+ A+ +A  N +
Sbjct: 149 LTPRELEVLLTVADGKSNGEIADELFVSEQTVKTHVSNMLTKLGLRDRAQAVVFAYENGL 208


>gi|269128421|ref|YP_003301791.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313379|gb|ACY99753.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 210

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 5/153 (3%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  +  +   R   L   V     + I    G    Y + T     +   +  +  +G  
Sbjct: 63  EVLRRLHGKVRSRFLALSVSDAAEDVIGVVRGGARGYVTKTISGPELTDAIGRVA-EGDA 121

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +   RL    +L A+ A      D       +LT RE E L  I+ G    EIA  L IS
Sbjct: 122 VFSPRLAGF-VLDAFAATAAPPIDPELD---QLTQREREVLRLIARGYAYKEIAKELFIS 177

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  +++S++RK     R     +A    +V
Sbjct: 178 VKTVETHVSSVLRKLQLSNRHELSRWAAARRLV 210


>gi|260577934|ref|ZP_05845864.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603954|gb|EEW17201.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
          Length = 227

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 6/191 (3%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK------YYNVLQRPTELFCPVFHT 115
           + VRW     Q+   +  S     ++  + +   D         +       +    F  
Sbjct: 27  ITVRWQAADGQEACELAESQPVDIILMDVQMPRMDGIEATRQVVSGDSGARVIVLTTFDN 86

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
               +       + +     D   +   +  +     +I       +      +    + 
Sbjct: 87  DNYVLGAVEAGASGFLLKDTDPEDLISAVRTVGDSAAVISPKATARLLRSIRMEQTPQRR 146

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V       LT RE+E L  I+ G ++ EIA  L IS  TV  ++  ++ KT ++ R  
Sbjct: 147 EPVELDLPDPLTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVH 206

Query: 236 AIAYAVRNNIV 246
           A+ +A ++++V
Sbjct: 207 AVLFAFKHHLV 217


>gi|146320266|ref|YP_001199977.1| response regulator [Streptococcus suis 98HAH33]
 gi|223933224|ref|ZP_03625215.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|253751279|ref|YP_003024420.1| response regulator protein [Streptococcus suis SC84]
 gi|253753180|ref|YP_003026320.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755003|ref|YP_003028143.1| response regulator protein [Streptococcus suis BM407]
 gi|330832254|ref|YP_004401079.1| response regulator [Streptococcus suis ST3]
 gi|145691072|gb|ABP91577.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Streptococcus suis 98HAH33]
 gi|223898154|gb|EEF64524.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|251815568|emb|CAZ51151.1| response regulator protein [Streptococcus suis SC84]
 gi|251817467|emb|CAZ55208.1| response regulator protein [Streptococcus suis BM407]
 gi|251819425|emb|CAR44899.1| response regulator protein [Streptococcus suis P1/7]
 gi|292557848|gb|ADE30849.1| regulatory protein, LuxR: Response regulator receiver
           [Streptococcus suis GZ1]
 gi|319757560|gb|ADV69502.1| response regulator [Streptococcus suis JS14]
 gi|329306477|gb|AEB80893.1| response regulator [Streptococcus suis ST3]
          Length = 213

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R  ++       I+   R   +G   +        + +  H     +LT RE E LT +
Sbjct: 100 ARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLL 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  +  IA    IS  TV  ++++I+ K A   R+ A+ YA ++ +V
Sbjct: 160 AKGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLV 208


>gi|318061060|ref|ZP_07979781.1| two-component response regulator [Streptomyces sp. SA3_actG]
          Length = 198

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVH 179
                  +   ++   +A    G ++   +  + L  R     L  A+           H
Sbjct: 71  GLALSAADDIGAVRNALAGGVKGYVVTGTRTNVGLPGRPGAAQLGAASRTHRRPPGTPSH 130

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A 
Sbjct: 131 PGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAV 190

Query: 240 AVRNNIV 246
           A+R  I+
Sbjct: 191 ALRTGII 197


>gi|119896947|ref|YP_932160.1| LuxR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119669360|emb|CAL93273.1| putative transcriptional regulator, LuxR family [Azoarcus sp. BH72]
          Length = 318

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 3/140 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
             +L    F    +  TPP  ++    +      R  +  +++    R +L       G 
Sbjct: 169 ARQLIRNWFDIGADETTPPRLIEWILAAELARRERREVAPLVMADGARRLLASFHDHTGE 228

Query: 165 ---LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              L   +     S        F LT RE E L W++ GKT+ +I  ILG S  TV+ ++
Sbjct: 229 EEWLVVLREENDASAIEALIAAFRLTTREAEVLYWVTRGKTNRDIGDILGSSPRTVHKHL 288

Query: 222 ASIMRKTATKTRSGAIAYAV 241
             +  K   +TR+ A + A+
Sbjct: 289 EHVFEKLGVETRTAAASMAL 308


>gi|51893866|ref|YP_076557.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857555|dbj|BAD41713.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 210

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 68/168 (40%), Gaps = 9/168 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE----LFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           P  ++  + +   D      +R  E    +   V  ++P++      +  R  +L++ + 
Sbjct: 48  PDVILMDLIMPRVDG-IEGTKRCLEAHPGVRVIVLTSMPDDELVVPAI--RAGALSYVLK 104

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I    +    +  +  +  L  +   A        +         E+T RE+E L  I+
Sbjct: 105 DIAADELAETIRKAVSGQPTLHPVA--AQRMMQELTAPPKASAGVEEITPRELEVLKLIA 162

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++ EI   L I   TV  +++ ++ K   + R+    YA++N +V
Sbjct: 163 QGLSNKEIGERLFIGERTVKTHVSHLLEKLQLQDRTQLAIYALQNKLV 210


>gi|297560440|ref|YP_003679414.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844888|gb|ADH66908.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 234

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 9/167 (5%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTFDVAR 139
           VR   +   +    ++     L   V       F      +       + +       A 
Sbjct: 56  VRMPGMDGIEATRQIVSWARPLGHRVRVLALTTFDLDEYAVEVLRAGASGFLLKDAPPAE 115

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   + ++      I    L    LL  +   +  +       +  LT RE E L  ++ 
Sbjct: 116 LVSAVEVVADGAAAISPAVLNR--LLDRFAPLLPSASPATEPAEDTLTAREHEVLRLLAR 173

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L +   TV +++ SI+ K   + R  A+ YA  + +V
Sbjct: 174 GWSNAEIAAHLVLGETTVKSHVGSILTKLELRDRVQAVVYAYEHGLV 220


>gi|159899859|ref|YP_001546106.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892898|gb|ABX05978.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 461

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE+E L  ++ G +++EIA  L IS NTV  +I +I  K    +R+ A   
Sbjct: 1   MSDQSPLSEREIEVLRQLALGASNNEIANTLVISPNTVKVHIRNIYAKLGVLSRAEATLE 60

Query: 240 AVRNNIV 246
           AVR  ++
Sbjct: 61  AVRRGLI 67


>gi|183601417|ref|ZP_02962787.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241191083|ref|YP_002968477.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196489|ref|YP_002970044.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219023|gb|EDT89664.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249475|gb|ACS46415.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251043|gb|ACS47982.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794072|gb|ADG33607.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 226

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 2/137 (1%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ E G+       
Sbjct: 90  VMSAINAGASGFLLKDTEPETLLNSIRTVHQGNAIIAPTATKRLIEKMMETGVTQEGPGR 149

Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                   +       LT RE E L  I+ G ++ EIA  L IS  TV  ++A I++K  
Sbjct: 150 QQSEVAAEYTDPELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKIN 209

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R  A+ +A  N++V
Sbjct: 210 ARDRVQAVVFAYENHLV 226


>gi|37223214|gb|AAQ90204.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 17/221 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
             ++ ++   D        +  + + +   ++L          + D  +  ++P    + 
Sbjct: 12  EKIINKIKTCDNNKDINQCLSEMAKIIHCDYYLFAIIYPHSIIRPDISIIDNYPEKWRKY 71

Query: 90  MALSEKDKYYNVLQRPTELFCP----VFHTLP-ENITPPAGMDNRY------CSLTFDVA 138
              +   +Y  V+        P    VF     +  +P    + +        S     A
Sbjct: 72  YDEAGLLEYDPVVNYSKSHHSPINWNVFEKKSIKKESPNVIKEAQASGLITGFSFPIHTA 131

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVE 192
               G++      + I  D L+         +L +   +  K    H   D  LT RE E
Sbjct: 132 NNGFGMLSFAHSDKDIYTDSLFLHANTNVPLMLPSLVDSYQKINTTHKKSDSILTKRETE 191

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           CL W SEGK++ +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 192 CLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232


>gi|284043982|ref|YP_003394322.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948203|gb|ADB50947.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 17/215 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +D    +   +  L     A H L+V  D         +V    P   +  + L +    
Sbjct: 11  IDDHTIFRSGLRELL----AEHGLVVEGDAPTVAAGVQLVERCAPDVAIVDLDLPDGSG- 65

Query: 99  YNVLQRPTE-------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            + ++R  E       L   V     +           Y      +  I  G+  +    
Sbjct: 66  IDAIRRIAECAPGTAVLVLTVSEADDDLTDAVLAGGCGYLLKDAPIETIVAGVTAVAAGD 125

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            ++         +LA  +A+  ++         +L+ RE E L  ++ G  +  IA  L 
Sbjct: 126 AVLSP--RVAATMLARMRASGRQT---AARARAQLSPREQEVLRLVAGGMDNAAIAQELF 180

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS +TV N+I+SI+ K     R  A   AVR+ I+
Sbjct: 181 ISPHTVKNHISSILTKLHVANRIQAAVRAVRDEIL 215


>gi|312112369|ref|YP_003990685.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217470|gb|ADP76074.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1]
          Length = 557

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 11/158 (6%)

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
            + Y +V QR       +  T+P+      G       ++F V     G+M +  K    
Sbjct: 393 TEYYEDVCQRYFFTEEKLLETIPKLCETKFGTVME---ISFSVHEHMHGVMAVHMKHLEA 449

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKD--------FELTGREVECLTWISEGKTSDEI 206
            ++    +  L      + K  + H  K           LT RE++ L  + +G ++ EI
Sbjct: 450 AKEAEVYVTALIGIGTMIMKQNNYHGPKQQLNMDMLSERLTSREMDVLNLLVQGCSNREI 509

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  L IS +TV N+I +I +K     RS  IA   + N
Sbjct: 510 ADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 547


>gi|220913015|ref|YP_002488324.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219859893|gb|ACL40235.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 242

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 7/163 (4%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R M  +      +       +    F      +       + +         +   +  +
Sbjct: 79  RLMESALAAPAGSARAELRVVVLTTFDLDEYALAAIQAGASGFLLKDAPPEELLEAIRTV 138

Query: 148 FPKGRIILRDR----LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                +I        L  +  L   Q N    +     +   LT RE E    I++G+++
Sbjct: 139 HRGDAVIAPSTTRRLLDHVAPLLRSQGNERPEHHAAVQR---LTTREREVFQLIAQGRSN 195

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 196 PEIAAGLFVSEATVKTHVGHILAKLGARDRVQAVVIAYETGVV 238


>gi|332668949|ref|YP_004451957.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332337987|gb|AEE44570.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 226

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 4/133 (3%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +       R   L   +  +  G  ++ P+    + D L+   L    +A  
Sbjct: 91  FAALRAGASGFLLKTARPDELVDAIRTVAAGTSVVAPRVLRRMLD-LFAPHLPTGGRAPA 149

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D        LT RE++ L  ++EG ++ EIA  L +S  TV  ++ ++  K   + 
Sbjct: 150 PDGQDPRLAA---LTPRELDVLRLVAEGASNVEIAAELVVSEATVKTHVGNVFAKLGARD 206

Query: 233 RSGAIAYAVRNNI 245
           R  A+  A    +
Sbjct: 207 RVQAVIIAYECGL 219


>gi|228989393|ref|ZP_04149382.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM
           12442]
 gi|228770340|gb|EEM18915.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM
           12442]
          Length = 216

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 86/210 (40%), Gaps = 9/210 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +   ++  + + +  E VG ++      D  +  ++   +  +     +R   ++  +  
Sbjct: 9   IRDGLAMLLNLRSELEVVGTAN------DGDEVVRIAEQLQPEIILMDIRMPRINGVEGT 62

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIIL 155
             + +R  ++   +  T  ++      ++   + Y     +   I   ++ +   G ++ 
Sbjct: 63  RLIRERFPDMKVLMLTTFNDSELIFEALEQGASGYLLKDMETDAIVQAILTVHAGGAVLP 122

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D   +I         +  S      +  +LT RE++ L  I  G  + EIA  L I+  
Sbjct: 123 QDITAQIVKELKRTKVVEISGQNQPKQVEQLTEREIDVLREIGLGLNNKEIAEKLFITEG 182

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TV N++++++ K   + R+ A  YAVR  I
Sbjct: 183 TVKNHVSNLISKLELRDRTQAAIYAVRYGI 212


>gi|21311443|gb|AAM46724.1|AF452135_9 LuxR2 [Aliivibrio salmonicida]
          Length = 223

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 17/210 (8%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           +  LT+ +   ++LL         K D  +  ++P         +   K   ++      
Sbjct: 5   LQELTKILHCEYYLLAIISQKTMIKSDIKILDNYPLYWRNYYDEANLIKDDPIVDYSFSH 64

Query: 109 FCPV----FHTLPE-----NITPPAGMDNRYCSLTFDVA--RIRIGLMLLFPKGRIILRD 157
             P+    F    +     N+   A +   Y   +F +       G++      +    D
Sbjct: 65  HSPINWSIFEKQKKMSNQINVIEEAKISGLYSGFSFPIHTKDGGFGMISFASSQKEKYID 124

Query: 158 RLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            L+         +L     +  +          +LT RE ECL W  EGK+  EI+ ILG
Sbjct: 125 NLFLNACMSVPLILPELLDSNQRITKEDQQVHTKLTKREKECLIWSCEGKSRWEISKILG 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            S  TV  ++A+   K     R  +I+ A+
Sbjct: 185 CSERTVTFHLANSQLKLGANNRCQSISKAI 214


>gi|78046817|ref|YP_362992.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|289669198|ref|ZP_06490273.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|325927244|ref|ZP_08188501.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78035247|emb|CAJ22892.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542364|gb|EGD13849.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 213

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +          P  +    F      +         Y     
Sbjct: 49  DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + ++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 107 SLEQLVGAIRTVAEGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|329935654|ref|ZP_08285461.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304915|gb|EGG48786.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 224

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 4/185 (2%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPENIT 121
            R      +    +V  D     +  +  + +       V   P  L    F        
Sbjct: 38  ARGVELSRRTHPDVVLMDVRMPEMDGLEAARRLLTPPAGVTHVPRVLMLTTFDIDDYVYE 97

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + +       A +   + ++     ++         L+A +  +          
Sbjct: 98  ALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTRR--LIADFAKSRPGGRGGPAQ 155

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE E LT ++ G ++ EIA  L ++  TV  +++ ++ K   + R+ A+ +A 
Sbjct: 156 RLKGLTQRETEVLTLVARGLSNSEIAETLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAY 215

Query: 242 RNNIV 246
            + +V
Sbjct: 216 ESGLV 220


>gi|228995587|ref|ZP_04155253.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17]
 gi|229003214|ref|ZP_04161054.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4]
 gi|228758053|gb|EEM07258.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4]
 gi|228764159|gb|EEM13040.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17]
          Length = 216

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 86/210 (40%), Gaps = 9/210 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +   ++  + + +  E VG ++      D  +  ++   +  +     +R   ++  +  
Sbjct: 9   IRDGLAMLLNLRSELEVVGTAN------DGDEVVRIAEQLQPEIILMDIRMPRINGVEGT 62

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIIL 155
             + +R  ++   +  T  ++      ++   + Y     +   I   ++ +   G ++ 
Sbjct: 63  RLIRERFPDMKVLMLTTFNDSELIFEALEQGASGYLLKDMETDAIVQAILTVHAGGAVLP 122

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D   +I         +  S      +  +LT RE++ L  I  G  + EIA  L I+  
Sbjct: 123 QDITAQIVKELKRTKVVEISEQNQPKQVEQLTEREIDVLREIGLGLNNKEIAEKLFITEG 182

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TV N++++++ K   + R+ A  YAVR  I
Sbjct: 183 TVKNHVSNLISKLELRDRTQAAIYAVRYGI 212


>gi|170078560|ref|YP_001735199.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886229|gb|ACA99942.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 251

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D    +   LT RE+E L  I +G ++ EIA  L I+  TV  ++ +I+ K     R+
Sbjct: 179 PEDQQLLESCPLTDRELEVLQLIVDGCSNSEIAEHLFITVGTVKTHVRNILNKLCADDRT 238

Query: 235 GAIAYAVRNNIV 246
            A   A+R+ +V
Sbjct: 239 QAAVRALRSGLV 250


>gi|171058058|ref|YP_001790407.1| LuxR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775503|gb|ACB33642.1| transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6]
          Length = 267

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L       LR+      ++     ++   +         +T RE E L WI  GK++ EI
Sbjct: 171 LLRLVVPFLREAWVRSQMIGGRHDDLPAPHGHAV-----ITVREQEILKWIYLGKSNSEI 225

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ILGIS  TV N++  ++ K     R+ A+  A+  +++
Sbjct: 226 GQILGISALTVKNHVQKMLHKLNVVNRAQAVGRAIEAHLI 265


>gi|73662218|ref|YP_300999.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|88952438|sp|Q49YS9|VRAR_STAS1 RecName: Full=Response regulator protein vraR
 gi|72494733|dbj|BAE18054.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 209

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            +    + ++E  +L   +  M +  +++      LT RE+E L  I++G ++ EIA   
Sbjct: 117 RKTYNNESVFEAEVLVKMRNRMKQRAELYE----MLTEREMEILLLIAKGYSNQEIASAS 172

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 173 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|163846970|ref|YP_001635014.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524791|ref|YP_002569262.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668259|gb|ABY34625.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448670|gb|ACM52936.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 218

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 1/142 (0%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            RP  +    FH     +   A     Y     D   +   +  +   G +I    + ++
Sbjct: 75  PRPAVIMLTTFHDDERVLQSIAAGARGYLLKDVDHRVLADSIRTVAGGGALIHPQIIAQL 134

Query: 163 -GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              LA+       +          LT RE + L  +++G T+ EI   L +S  TV N++
Sbjct: 135 LPRLASLAPTPVTASSSPSDVTSILTPRERDILRLLAQGYTNQEIGEQLALSVGTVKNHL 194

Query: 222 ASIMRKTATKTRSGAIAYAVRN 243
           + I  K A + R+ A  +A  +
Sbjct: 195 SVIFAKLAVRDRTQAALWAREH 216


>gi|126433026|ref|YP_001068717.1| LuxR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|126232826|gb|ABN96226.1| transcriptional regulator, LuxR family [Mycobacterium sp. JLS]
          Length = 544

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           ++L     LA        S +   G    LT RE+E L  ++ G T+ EIA  L IS  T
Sbjct: 458 EQLGAAPALAQVAEV---STNAPAGAPSGLTTRELEVLRLLATGATNREIARTLVISEKT 514

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++ +I  K    +R+ A AYA ++++V
Sbjct: 515 VARHLGNIFNKLDVSSRTAATAYAYQHDLV 544


>gi|318061908|ref|ZP_07980629.1| two component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078461|ref|ZP_07985793.1| two component system response regulator [Streptomyces sp. SA3_actF]
          Length = 224

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 3/146 (2%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V  RP  L    F              + +       A +   + ++     ++      
Sbjct: 77  VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTR 136

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
               L A  A    +      +   LT RE E LT ++ G+++ EIA  L ++  TV  +
Sbjct: 137 R---LIADFARQRPAPGKPALRLKALTERETEVLTLVARGRSNAEIAESLVLAEQTVKTH 193

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ ++ K   + R+ A+ +A  + +V
Sbjct: 194 VSRVLTKLGLRDRAQAVVFAYESGLV 219


>gi|227497785|ref|ZP_03927971.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832785|gb|EEH65168.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 246

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 4/163 (2%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV---FHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   ++  +    + Q+       +   F                +       A +   
Sbjct: 82  VRMPGMNGIEATEAITQQCPGTKILILTTFDLDEYAFAGLRAGAAGFLLKDTRPAELAEA 141

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKT 202
           +  +     ++       +  + A       + D         LT RE E L  I++G +
Sbjct: 142 IRTVASGEAVVSPRVTRRMLEMFASHLPQDGAQDAAEDPRIASLTPREREILVLIAQGMS 201

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L +S  TV  ++ +++ K   + R  A+  A    +
Sbjct: 202 NSEIADQLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETGL 244


>gi|256397990|ref|YP_003119554.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256364216|gb|ACU77713.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 221

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  + +       +RP  L    F              + +     
Sbjct: 50  DVVLMDVRMPVMDGLEAARRILAGAP-ERPRILMLTTFDLDDYVYAALRAGASGFLLKDA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A +   + ++     ++         L+A + A    +          LT RE++ L 
Sbjct: 109 PAAELVHAVRVVAAGDALLAPSVTRR--LIADFAARR-PADQSGPVAVAALTPRELDVLR 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L ++  TV  +++ I+ KT  + R+ A+  A  + +V
Sbjct: 166 LIARGLSNQEIAGELVLAEQTVKTHVSRILAKTGLRDRAQAVVLAYESGLV 216


>gi|114799307|ref|YP_759854.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739481|gb|ABI77606.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC
           15444]
          Length = 254

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 13/128 (10%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE----------IGLLAAYQANMFKSYDV 178
                        IG ++       +    ++E          +  L+AY+  +  S D 
Sbjct: 124 GAIVAPIHSPMGVIGAVVWATDDEAVDVSGIFEARGAELYMLALKFLSAYKDAVLPSADP 183

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 E T RE++CL W + GKT  EIA I+G+S  T+  ++ +  RK     RS  I 
Sbjct: 184 EM---VEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIR 240

Query: 239 YAVRNNIV 246
            A     +
Sbjct: 241 LATTLGYI 248


>gi|290956584|ref|YP_003487766.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260646110|emb|CBG69203.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 198

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVH 179
                  +   ++   +A    G ++   +  I L  R     L  AA           H
Sbjct: 71  GLALSAADDIGAVRNALAGGVKGYVVTGTRTNIGLPTRPGAAPLGSAARMHRRPPGAPSH 130

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A 
Sbjct: 131 PGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAV 190

Query: 240 AVRNNIV 246
           A+R  I+
Sbjct: 191 ALRTGII 197


>gi|218246750|ref|YP_002372121.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059792|ref|YP_003137680.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167228|gb|ACK65965.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589958|gb|ACV00845.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 221

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 2/116 (1%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N YC    +   + + L  +        +    EI   AA+      + D+  G D  LT
Sbjct: 104 NGYCLKGIEAEHLILALRSVAVGASWWDQTGTTEIQ--AAFSKKPTINCDIIEGIDNPLT 161

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E L  I+ GKT+ EIA  L I+  TV  ++ +I++K   + R+ A   A+++
Sbjct: 162 QREQEILALIALGKTNQEIAQTLSIATGTVRVHVHAILQKLDVRDRTQAAIIALQH 217


>gi|229085213|ref|ZP_04217456.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228698080|gb|EEL50822.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 211

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV+N +
Sbjct: 151 LTKREKEVLREITKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGV 210

Query: 246 V 246
           V
Sbjct: 211 V 211


>gi|288572798|ref|ZP_06391155.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568539|gb|EFC90096.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 217

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 47/103 (45%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G   L    R + R + +    +A      F           +LT RE E L W+++G +
Sbjct: 109 GRTELLSAIRSVARGQCYVDPKVAGLLLGAFHKKQDEADMLCDLTDREKEVLFWLAQGLS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EI+  + +S  TV N+++ I++K   + R+ A   A R  I
Sbjct: 169 NLEISAKMNLSEKTVKNHVSHILKKLDLRDRTQAAILAWRVGI 211


>gi|297194849|ref|ZP_06912247.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152490|gb|EDY64595.2| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 224

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           LT  V R  +G  +  P    ++   L E   LA+ 
Sbjct: 91  HADVLEAVKSGATGYLLKSASTEELTDAVRRTAVGDPVFTPGLAGLV---LGEYRRLAS- 146

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                        K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 147 --EPGPPAGADEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 204

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 205 QLHNRVELVRYAIERGL 221


>gi|313158308|gb|EFR57710.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 211

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 12/159 (7%)

Query: 91  ALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            L         L R      +   +F                +     D+  +   +   
Sbjct: 60  GLDGAQTTERALARRPDLRIITLSMFGEESYYSRMVQAGARGFLLKDSDIGDVIEAI--- 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++     +   LL++    M    DV    D +L+ RE E L  +  G ++ EIA
Sbjct: 117 ---DAVMSGGSYFSPQLLSSLTGRMRTRDDV---PDEQLSVREREILVAVCRGLSNQEIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS+ TV+ + A+I+ KT  K  +  + YA+RN IV
Sbjct: 171 DELFISKRTVDKHRANILEKTGCKNTASLVVYAIRNGIV 209


>gi|223044000|ref|ZP_03614040.1| response regulator protein VraR [Staphylococcus capitis SK14]
 gi|222442543|gb|EEE48648.1| response regulator protein VraR [Staphylococcus capitis SK14]
          Length = 209

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R+ ++E  +L   +  M K  +++      LT RE+E L  I++G ++ EIA    I+  
Sbjct: 122 RESVFEPEVLVKMRNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASASHITIK 177

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 178 TVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|239979053|ref|ZP_04701577.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291450931|ref|ZP_06590321.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353880|gb|EFE80782.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 227

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 6/175 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +A +        L     +    F      +       + +     
Sbjct: 50  DVVLMDIRMPGTDGLAATRLISADPALDTVRVVMLTTFEVDEYVVRALRAGASGFLGKGS 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREV 191
           + A +   + +      ++        GL+A++ A      D   G   E    LTGRE 
Sbjct: 110 EPAELLGAIRVAHAGEALLSPAATK--GLIASFLAQSGHGADERPGAREERLAALTGRER 167

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 168 EVLVHVAGGLSNDEIAGRLQVSPLTVKTHVNRAMAKLGARDRAQLVVTAYETGLV 222


>gi|50085580|ref|YP_047090.1| putative two-component response regulator protein [Acinetobacter
           sp. ADP1]
 gi|49531556|emb|CAG69268.1| putative two-component response regulator protein [Acinetobacter
           sp. ADP1]
          Length = 320

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E   W++ GKT+ +IA IL +S  TVN ++  I  K   + R+ A+AY
Sbjct: 256 QLTQREAEVSHWLALGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAY 310


>gi|148983791|ref|ZP_01817110.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147923938|gb|EDK75050.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301799497|emb|CBW32043.1| response regulator protein [Streptococcus pneumoniae OXC141]
          Length = 210

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPP--AGMDNRYCSLTFD 136
           P  +V  + + E +     L    + P      V   L      P        Y   T  
Sbjct: 47  PDVIVMDIVMPEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      I +    E+     Y  N  + ++       ELT RE + L  
Sbjct: 107 ADELLHAVSKVAAGELAIEQ----EVSKKVEYHRNHMELHE-------ELTARERDVLQL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 156 IAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQATVYAFQHHLV 205


>gi|56964906|ref|YP_176637.1| two-component response regulator of extracellular proteinase
           [Bacillus clausii KSM-K16]
 gi|56911149|dbj|BAD65676.1| two-component response regulator of extracellular proteinase
           [Bacillus clausii KSM-K16]
          Length = 219

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 46/85 (54%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +  ++     ++ +S +    K   LT REV+ L  IS GK++ EIA  L IS  TV  +
Sbjct: 125 DPRIMKHVLTHVARSANSVADKVNRLTDREVDVLKEISTGKSNKEIAAALFISEKTVKTH 184

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
           +++++ K   + R+ A  +A++  I
Sbjct: 185 VSNLLGKLELQDRTQAALFAIQAGI 209


>gi|311895893|dbj|BAJ28301.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 2/143 (1%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           RP  L    F              + +       A +   + ++     ++         
Sbjct: 80  RPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRR-- 137

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+A +  N          +   LT RE E L  I+ G ++ EIA  L ++  TV  ++  
Sbjct: 138 LIADFARNRPAPRRDPRLRLNGLTPRETEVLELIARGLSNQEIAAHLVLAEQTVKTHVGR 197

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R+ A+  A  + +V
Sbjct: 198 ILGKLDLRDRAQAVVLAYESGLV 220


>gi|298246164|ref|ZP_06969970.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553645|gb|EFH87510.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 465

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 15/177 (8%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           Q   LD+ +      + +R +     +    +L    E    ++ TL          D  
Sbjct: 301 QVVLLDAQLPEGQSLEALRQIKQLNLNTRVLMLST-QEREDYLYETLRAGADGYLLKDVS 359

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
              L   +  +  G +L+ P+              LA    +          +   LT R
Sbjct: 360 SEELAEALRVVARGEVLVQPQ--------------LAGRLLSRVGRERERGARSEVLTTR 405

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  +  G  + EIA  L +S  TVN ++A+I +K     R+ A++ A+   +V
Sbjct: 406 ELEVLRLLVRGLRNKEIAARLYVSERTVNFHLANIYQKMNVSGRTEALSKALAQGLV 462


>gi|297538769|ref|YP_003674538.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297258116|gb|ADI29961.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 281

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 8/106 (7%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           TF+V    +GL++  P    +LR ++  I  + A +A       V   K + L+ RE+E 
Sbjct: 180 TFNVQDSLMGLLM--PHIDNVLR-KIQHIEPVDASEAES-----VSVIKSYNLSVRELEI 231

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + W+ +GKT  EIA+IL IS+NTV +++  +  K     R+ A+A 
Sbjct: 232 IDWVKQGKTDSEIAMILFISQNTVKSHLKHVFEKLNVSRRAQAVAK 277


>gi|306842528|ref|ZP_07475179.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2]
 gi|306287384|gb|EFM58864.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2]
          Length = 171

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ ++      +M++  DV       
Sbjct: 48  ISQPCWAAQGVFGLLSFVRAGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 107

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 108 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKART 167

Query: 243 NNIV 246
             ++
Sbjct: 168 FGLL 171


>gi|291571364|dbj|BAI93636.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 216

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 87/218 (39%), Gaps = 19/218 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           ++ R++ +D        + +L E       VG +    V  +L  + K D ++       
Sbjct: 1   MMIRVLLVDDQGIIREGLRSLLEAKPDLEIVGEAENGKVAVELALKLKPDVVLMD----- 55

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRI 142
            VR   +       ++ ++  E+   V  T  ++      M+     Y         +  
Sbjct: 56  -VRMPIMDGVAAMRSLAEQQPEIKVLVLTTFDDDEYITQAMESGAKGYLLKDTPSDELAQ 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  ++ +G   L   L+E  + A Y+       +   G   +LT RE+E L  I +G +
Sbjct: 115 AIRAVY-QGYTQLGPGLFEKVMAAKYK---PSRDEPLPGYLQDLTPRELEVLRLIGKGYS 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + EIA  L IS  TV N+++SI+ +   + R+     A
Sbjct: 171 NREIAQELFISERTVKNHVSSILSRLNLRDRTQVALLA 208


>gi|21222167|ref|NP_627946.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256786745|ref|ZP_05525176.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289770639|ref|ZP_06530017.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|10432460|emb|CAC10294.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289700838|gb|EFD68267.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 2/146 (1%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V  RP  L    F              + +       A +   + ++     ++      
Sbjct: 77  VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTR 136

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              L+A +      S      +   LT RE E LT ++ G+++ EIA  L ++  TV  +
Sbjct: 137 R--LIADFAQQRPASRGKPALRLKGLTERETEVLTLVARGQSNTEIARTLVLAEQTVKTH 194

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ ++ K   + R+ A+ +A  + +V
Sbjct: 195 VSRVLTKLDLRDRAQAVVFAYESGLV 220


>gi|311743637|ref|ZP_07717443.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum
           DSM 15272]
 gi|311312767|gb|EFQ82678.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum
           DSM 15272]
          Length = 220

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A    + F            LT RE++ L  +++G ++ EIA  L IS NTV N+I +I
Sbjct: 136 MATKLLDEFVQISRTPAPAASLTARELQVLRHVAKGFSNREIAGELFISENTVKNHIRNI 195

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   K+R  A  YAVR+ +V
Sbjct: 196 LEKLQMKSRMEAAMYAVRSRLV 217


>gi|225180998|ref|ZP_03734445.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168195|gb|EEG76999.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 219

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q       +    +   L+ RE E L  + EGKT+ EI   L +S  TV N+++ I+ K 
Sbjct: 134 QVMSLIRGEKAASQISGLSKREEEILHLVGEGKTNKEIGRELFLSEKTVRNHVSRILDKL 193

Query: 229 ATKTRSGAIAYAVRNNIV 246
               RS A A+  R +++
Sbjct: 194 GVSNRSQAAAFMARRSVI 211


>gi|120403052|ref|YP_952881.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1]
 gi|119955870|gb|ABM12875.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1]
          Length = 521

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              +   RL E+ + A  QA   ++   H  +   LT RE+E L  ++ G ++ EIA  L
Sbjct: 424 RERVREGRLDEVAVEAVLQAAGHRARG-HSPRPGGLTPREIEVLCLVARGASNKEIAATL 482

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GIS  T  N++     K     R GA  +A+ + +V
Sbjct: 483 GISGKTARNHVERTYAKIGATNRIGASMFALNHGLV 518


>gi|153003783|ref|YP_001378108.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027356|gb|ABS25124.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 202

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L A       +  D     +  LT RE E L  ++EG  +  IA  LGIS +T   ++ +
Sbjct: 119 LEAPLAGEWLRPPDAPLAAE-GLTRREREVLALLAEGLANKAIAARLGISEHTAKFHVNA 177

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   ++R+ AI  A R  +V
Sbjct: 178 ILGKLGVESRAEAIVRAARLGLV 200


>gi|302522529|ref|ZP_07274871.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302431424|gb|EFL03240.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 219

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVH 179
                  +   ++   +A    G ++   +  + L  R     L  A+           H
Sbjct: 92  GLALSAADDIGAVRNALAGGVKGYVVTGTRTNVGLPGRPGTAQLGAASRTHRRPPGTPSH 151

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A 
Sbjct: 152 PGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAV 211

Query: 240 AVRNNIV 246
           A+R  I+
Sbjct: 212 ALRTGII 218


>gi|224824369|ref|ZP_03697477.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224603788|gb|EEG09963.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 222

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 3/138 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   V     +           Y     D   ++  ++       ++         L+A 
Sbjct: 83  VMLTVSEDADDLTAALKAGARGYLLKNIDADFLKQSIIKAAAGESVMSEA--MTAKLMAH 140

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           ++A            + +LT RE E L ++++G+++ EIA  L ++ +TV  ++ +I++K
Sbjct: 141 FRAGAPAPSQQQQELE-KLTPREREILGFLAQGQSNKEIARTLDLAESTVKIHVQNILKK 199

Query: 228 TATKTRSGAIAYAVRNNI 245
               +R  A  YAV + +
Sbjct: 200 LGLSSRVQAAVYAVEHGV 217


>gi|222530583|ref|YP_002574465.1| LuxR family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222457430|gb|ACM61692.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 211

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 78/193 (40%), Gaps = 17/193 (8%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV----RCMALSEKDKYYNVLQRPTELFC 110
            +   +F +V      ++ ++ +       D+V    R   +   +  +N+  +   +  
Sbjct: 22  ILELENFEVVSLCTNAKEAIEFLEKKH--ADVVLMDIRMPVMDGIEGTFNIKTKFPNVKV 79

Query: 111 PVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
            +  T  E       +    + Y   + D   I   ++ +     ++ ++       +A 
Sbjct: 80  IILTTFCEEDYIKKSLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKE-------IAL 132

Query: 168 YQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           Y +++ K        K   LT RE+E    IS+G ++ EIA +L IS  TV NYI SI++
Sbjct: 133 YISDVLKRTSKQLLEKTQNLTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQ 192

Query: 227 KTATKTRSGAIAY 239
           K   K R+    Y
Sbjct: 193 KLNLKNRTQIAVY 205


>gi|240140122|ref|YP_002964599.1| putative response regulator; input and output domains: CheY and
           LuxR family [Methylobacterium extorquens AM1]
 gi|240010096|gb|ACS41322.1| putative response regulator; input and output domains: CheY and
           LuxR family [Methylobacterium extorquens AM1]
          Length = 300

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A A
Sbjct: 231 RLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASA 290

Query: 239 YAVRN 243
            A R+
Sbjct: 291 VAARH 295


>gi|312128700|ref|YP_003993574.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778719|gb|ADQ08205.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 211

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 17/193 (8%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV----RCMALSEKDKYYNVLQRPTELFC 110
            +   +F +V      ++ ++ +    W  D+V    R   +   +  +N+  +   +  
Sbjct: 22  IIELENFEVVSLCTNAKEAIEFLKM--WHADVVLMDIRMPVMDGIEGIFNIKTKFPNVKV 79

Query: 111 PVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
            +  T  E       +    + Y   + D   I   ++ +     ++ ++       +A 
Sbjct: 80  IILTTFCEEDYIEKSLSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKE-------IAL 132

Query: 168 YQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           Y +++ K        K   LT RE+E    IS+G ++ EIA +L IS  TV NYI SI++
Sbjct: 133 YISDVLKRTSKQLLEKTQNLTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQ 192

Query: 227 KTATKTRSGAIAY 239
           K   K R+    Y
Sbjct: 193 KLNLKNRTQIAVY 205


>gi|312132943|ref|YP_004000282.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773923|gb|ADQ03411.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
          Length = 248

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ E   +AA    
Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGR 166

Query: 172 MFKSYDVHW-------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
              S             +  ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 167 PENSATTSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248


>gi|302866747|ref|YP_003835384.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302569606|gb|ADL45808.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 225

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 1/171 (0%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  + +         P  L    F              + +     
Sbjct: 52  DVVLMDVEMPVLDGLEATRRITADATPGGPAVLILTTFDRDDYLFAALRAGASGFLLKNG 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + ++     +I    L    +    +         H     +LT RE E L 
Sbjct: 112 TPEDLIDAVRVVARGEGLIAP-ALTRRVISTFARPGAAPPDPRHDAATADLTPREREVLE 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA +L +   TV  +++ ++ K   + R  A+ +A  + +V
Sbjct: 171 LVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV 221


>gi|260777849|ref|ZP_05886742.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605862|gb|EEX32147.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 240

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++CLTW ++GK++ EIA I+  +  TV  ++++  +K     R  A+  A+    
Sbjct: 176 LTNREIQCLTWAADGKSASEIADIVDCTERTVKFHLSNACKKLGATNRCQAVTRALLGGH 235

Query: 246 V 246
           +
Sbjct: 236 I 236


>gi|108797407|ref|YP_637604.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866491|ref|YP_936443.1| LuxR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108767826|gb|ABG06548.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS]
 gi|119692580|gb|ABL89653.1| transcriptional regulator, LuxR family [Mycobacterium sp. KMS]
          Length = 544

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           ++L     LA        S +   G    LT RE+E L  ++ G T+ EIA  L IS  T
Sbjct: 458 EQLGAAPALAQVAEV---STNAPAGAPSGLTTRELEVLRLLATGATNREIAHTLVISEKT 514

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++ +I  K    +R+ A AYA ++++V
Sbjct: 515 VARHLGNIFNKLDVSSRTAATAYAYQHDLV 544


>gi|297626683|ref|YP_003688446.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922448|emb|CBL57021.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 217

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 2/145 (1%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWE 161
           +    +    F              + +     D   +   +  +     ++     L  
Sbjct: 73  ETARVIVLTTFDRDDYLFDALGAGASGFILKNSDPTELVAAVRAVANGDALLSPSVTLRV 132

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           I  +A   A    +      +   LT REVE L  ++ G ++ EIA  L +S  TV  ++
Sbjct: 133 IRAMAQGHAPREVTPGAD-AELARLTDREVEVLRALARGLSNAEIAAELFVSEATVKTHV 191

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++ K   + R  A+A+A ++ +V
Sbjct: 192 SNVLSKLGLRDRVQAVAHAYQHGLV 216


>gi|294055674|ref|YP_003549332.1| transcriptional regulator, LuxR family [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615007|gb|ADE55162.1| transcriptional regulator, LuxR family [Coraliomargarita
           akajimensis DSM 45221]
          Length = 269

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 17/135 (12%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK- 182
            G+DN +C++    +R  I    +  KG         E  LL A QA++  +  + W + 
Sbjct: 116 LGIDN-HCAVHVPSSRNEINFFGIERKGGPDFTSE--EKALLEAAQAHLTNARALAWERS 172

Query: 183 -------------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                           LT RE E L+W++EGK++ EIA+++GIS   VN++I +I  KT 
Sbjct: 173 LSNHSPINPEKLAQHGLTTRESEILSWLAEGKSNGEIAILMGISSYRVNDHIQAIHTKTN 232

Query: 230 TKTRSGAIAYAVRNN 244
           T +R  A  +A+R N
Sbjct: 233 TPSRPAAALWAIRAN 247


>gi|220920519|ref|YP_002495820.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945125|gb|ACL55517.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 123

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 158 RLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           RL   G  A     +    +     G D  LT RE+E L+ ++EG ++  IA  LGIS +
Sbjct: 31  RLARPGEAADAVLTLPPGSAATPDAGPDVGLTPREIEVLSLLAEGASNKAIARRLGISVH 90

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T   ++ S++ K     R+ A+A+A R  ++
Sbjct: 91  TAKFHVGSLLDKLDATGRTDAVAHAARRGVI 121


>gi|309791230|ref|ZP_07685762.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308226792|gb|EFO80488.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 218

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVI 209
            I   +  E  L     A + + +      +    +LT RE++ L  +++G ++ EIA  
Sbjct: 116 AIRAAQRNEAVLHPEVAAKLMQEFSAPRSSETTVDQLTPREMDVLRLVAKGMSNKEIADT 175

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  T   ++++I+ K     R+    YA+R  +V
Sbjct: 176 LVISEKTTKTHLSNILSKLHLADRTQVAIYALRKRLV 212


>gi|163852797|ref|YP_001640840.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|163664402|gb|ABY31769.1| response regulator receiver [Methylobacterium extorquens PA1]
          Length = 300

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A A
Sbjct: 231 RLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASA 290

Query: 239 YAVRN 243
            A R+
Sbjct: 291 VAARH 295


>gi|91776279|ref|YP_546035.1| LuxR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710266|gb|ABE50194.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus
           KT]
          Length = 257

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILG 211
             +   L +I  L   Q  + K+      +    L+GRE+E + W+++GKT+ EI +IL 
Sbjct: 167 PYIDSALRQIEHLPEQQPTLIKAEPEPKDESLNILSGRELEIMDWVTKGKTNQEIGMILD 226

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IS  TV N++  I +K     R+ A+A 
Sbjct: 227 ISAFTVKNHLQRIFKKLNVMNRAQAVAK 254


>gi|15597095|ref|NP_250589.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAO1]
 gi|116049852|ref|YP_791341.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892145|ref|YP_002441012.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58]
 gi|254234991|ref|ZP_04928314.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719]
 gi|254240292|ref|ZP_04933614.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192]
 gi|6014709|gb|AAF01471.1|AF190630_1 PhzR [Pseudomonas aeruginosa PAO1]
 gi|9947891|gb|AAG05287.1|AE004616_1 quorum-sensing control repressor [Pseudomonas aeruginosa PAO1]
 gi|115585073|gb|ABJ11088.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166922|gb|EAZ52433.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719]
 gi|126193670|gb|EAZ57733.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192]
 gi|218772371|emb|CAW28153.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58]
          Length = 237

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 18/234 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R   L  +  +     +   +  +    G   F       F          S++P +   
Sbjct: 5   REGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKS 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARI 140
                +      +++     + P+     +              G+ + + S+       
Sbjct: 65  RYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGW-SIPVRGKYG 123

Query: 141 RIGLMLLFPKGRIILRDR--------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            I ++ L      I            LW   +L A   ++     V    +  LT RE E
Sbjct: 124 LISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPES-NVRLTARETE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W + GKT  EI +IL I + TV  +I + MRK  +  ++ A   A    ++
Sbjct: 183 MLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236


>gi|108805597|ref|YP_645534.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766840|gb|ABG05722.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 219

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + +    + A     +  +         EL+ RE+E L  I+EG ++ EIA  L +S  T
Sbjct: 125 EAVLHPRVAARVVRELHGARRAEPNVFQELSDREMEVLKLIAEGLSNAEIAARLYVSEKT 184

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V +++++I+ K     R+ A  YA R  +V
Sbjct: 185 VKSHVSNILGKLHLADRTQAAVYAWREGVV 214


>gi|163734517|ref|ZP_02141956.1| transcription regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
 gi|161392010|gb|EDQ16340.1| transcription regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
          Length = 267

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 7/158 (4%)

Query: 92  LSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           LS   ++     L R ++       TL ++       D     +     R     +    
Sbjct: 106 LSRPFRWSEAPKLMRLSQEGERYMQTLADSG----LGDGVAMQVYGPNMRNAYVGLGFGE 161

Query: 150 KGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               +  D ++E+   A      + +  +        L+ REVE L WI+ GK++  IA 
Sbjct: 162 HDPNLTSDEIFELQCAAQIAHIRYCELTEYRQRTADTLSPREVEILQWIARGKSNSVIAE 221

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ILGISR+TV+     I  K     R+ A    + + +V
Sbjct: 222 ILGISRHTVDTITRRIFEKLDVNDRTTAAIRGLGSGLV 259


>gi|313201574|ref|YP_004040232.1| LuxR family transcriptional regulator [Methylovorus sp. MP688]
 gi|26005747|dbj|BAC41336.1| transcription regulator like protein EpsA [Methylobacillus sp. 12S]
 gi|312440890|gb|ADQ84996.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688]
          Length = 265

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 146 LLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGK 201
            +       +   L ++  L   + A+   S D+H  ++    +L+ RE+E + W+  GK
Sbjct: 160 YMLESLLPYIDSALRQLEHLPVQHPADKEASEDLHEEENEALEQLSSREIEIMEWVRNGK 219

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T+ EI +IL IS  TV N++  I +K     R+ A++ 
Sbjct: 220 TNQEIGMILDISSFTVKNHLQRIFKKLDVLNRAQAVSK 257


>gi|297193150|ref|ZP_06910548.1| response regulator receiver protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297151658|gb|EDY65235.2| response regulator receiver protein [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 557

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 57/173 (32%), Gaps = 4/173 (2%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V S         + L+  D    ++              P        +  R C    D 
Sbjct: 385 VLSVMAAAARGSVDLAAGDARSALIALRRAELGWRELDAPYETAHVRMLIGRACRALGDD 444

Query: 138 ARIRIGL----MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
               I L    +            RL      AA +     +     G    LT RE   
Sbjct: 445 ETAGIELEAARVGFERLRAAPDLARLDPFPRDAAAEQAPRHAPAHGPGGVLRLTPREQAV 504

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ GK + EIA  L IS +TV  +I +I  K    +R+ A  +A  +++V
Sbjct: 505 LRLVAAGKHNREIASELVISEHTVARHIQNIFAKLDVSSRTAASVFAYEHHLV 557


>gi|70732607|ref|YP_262370.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens
           Pf-5]
 gi|68346906|gb|AAY94512.1| autoinducer-binding transcriptional regulator, LuxR family
           [Pseudomonas fluorescens Pf-5]
          Length = 252

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 161 EIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
              LLA         +          +LT RE ECL W +EG TS EIA  L  S+ T+N
Sbjct: 163 HFTLLAHALQEHLYPQLSKCVRSYPVDLTRRERECLKWAAEGMTSGEIAERLQRSQATIN 222

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ S M K   + R  A+  AV   ++
Sbjct: 223 LHLTSAMHKLGARNRVQAVVRAVHYRLL 250


>gi|37528381|ref|NP_931726.1| hypothetical protein plu4562 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787819|emb|CAE16934.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 238

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 17/222 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
            + +++L+ +           R+     Y+G   + + + + +       ++ ++   + 
Sbjct: 3   TSFNEILSEIKKSKTMPELEKRLLNAINYLGFEFYSIYQEEKYPFTTKKYVLITNLNIET 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVF----------HTLPENITPPAGMDNRYCSLTFD 136
                         ++        P             T+ ++ +    + N   S+   
Sbjct: 63  ASNYNQDNNHDSDQLMNGDYTFSIPSVCNDKISKNTDFTIEKSNSNKNEVKNS-LSIKIK 121

Query: 137 VARIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190
                  +  +  K   I   + L + G+L        K+++    K  +     L+ RE
Sbjct: 122 GYHGERSIFSVARKEGTISHNEILNKAGVLGILANECIKTFNNLKNKKDKIIIPTLSTRE 181

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           VE + W  EGKTS EIA IL IS  TVN +I ++M K     
Sbjct: 182 VEVIRWTCEGKTSAEIADILDISTRTVNFHINNVMEKLVVPN 223


>gi|294666925|ref|ZP_06732155.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603297|gb|EFF46718.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 213

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +       L  P  +    F      +         Y     
Sbjct: 49  DVVLMDMRMPVMSGLEALQMLSRNGAL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + ++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 107 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|320158186|ref|YP_004190564.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
 gi|319933498|gb|ADV88361.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
          Length = 214

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 44/82 (53%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L +Y      +       D ELT RE++ L ++  G ++ EIA  L IS +T+ +++
Sbjct: 132 MMQLISYYEEKGGAKKEEPQLDIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHL 191

Query: 222 ASIMRKTATKTRSGAIAYAVRN 243
            +I RK   K R+ A A+A RN
Sbjct: 192 YNIFRKIDVKNRTQATAWAKRN 213


>gi|296161870|ref|ZP_06844671.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295887889|gb|EFG67706.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 262

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 96/262 (36%), Gaps = 22/262 (8%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE---YVGASHF 61
           ++ ++   + E + R S VS           ++ L C       + +       +G  H+
Sbjct: 1   MKHISRRRSNEGQHRPSLVSDRVQTGAPAP-LMRLACATDIPSLVESFGHAAGKLGFPHY 59

Query: 62  LLVRWDLFQE----QKLDSIVSSDWPFDLVR-----CMALSEKDKYYNVLQRPTELFCPV 112
           ++ R    +     +    ++ + +P + VR       A ++       LQ     +  +
Sbjct: 60  VISRVTRSRSTCARRTALEMIGARYPQEWVRHYQHRDYASTDPVHRAAFLQSAPYRWHDI 119

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIR-IGLMLLFPKGRII------LRDRL-WEIGL 164
                                   V   +  G +LLF     +      +  RL + I  
Sbjct: 120 IGLSKAERRLLDEAREAGLPAGLSVPLHQSDGSILLFNLSGPLHSVNDAINSRLAYLISA 179

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
              ++ +   S          LT R++ECLTW++ GKTS EI  ILG S  TV+ +I   
Sbjct: 180 QFHFELHRLASMPSRRAAHL-LTARQLECLTWVARGKTSAEIGEILGRSHYTVDYHIKEA 238

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           M     ++R+ A  +A  + I+
Sbjct: 239 MEALNIRSRTAAAVHATVHGII 260


>gi|218247412|ref|YP_002372783.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257061251|ref|YP_003139139.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167890|gb|ACK66627.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256591417|gb|ACV02304.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 210

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 14/171 (8%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVF--HTL-PENITPPAGMDNRYCSLTFD 136
           P  +V  + L   D       + ++  ++   +   HTL  E +   +   + YC     
Sbjct: 47  PDLIVMDIGLPRLDGIAATKQIKEQLPDIHIVMLTSHTLQTEVVAALSSGADAYCIKGAS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLT 195
           + R       L            +    +A    +  K       ++  L + RE+E L 
Sbjct: 107 LER-------LLAAIEAAKDGATYLDPQIARLVLDNLKPPTPEPNQNLALLSERELEVLK 159

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ +V
Sbjct: 160 LIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210


>gi|54026217|ref|YP_120459.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017725|dbj|BAD59095.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 230

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 8/184 (4%)

Query: 68  LFQEQKLDSIVSSDWPFDLV--RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP--- 122
              ++   ++ ++D    L+  R   L   D    +  RP      V  T  ++      
Sbjct: 43  ADGDEVFAAVATTDPDVVLMDLRMKRLGGIDATRQLRSRPGAPPVLVLTTFDDDQLLSGA 102

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  +         +   +  +   G  +       +  L+AY+  +  +      +
Sbjct: 103 LRAGAAGFLLKDSPAEDLIRAVRTVAGGGAWLDPAVTGRV--LSAYRT-VRPAPARRDDR 159

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE E L  I  G+ + EIA  LGIS  TV +++  I  K   + R+ AI +A  
Sbjct: 160 LAELTAREYEVLELIGRGRVNAEIATELGISEVTVKSHVGHIFGKLDLRDRAAAIVFAFD 219

Query: 243 NNIV 246
           + +V
Sbjct: 220 HGVV 223


>gi|329939256|ref|ZP_08288592.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301485|gb|EGG45379.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 238

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 2/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +A +E+      L+    L    + T              +     
Sbjct: 64  DVVVMDIRMPEVDGLAATERICADPDLRDCRVLILTTYETDENVARALRAGAGGFVGKGI 123

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++         L+A + A   +S      +   LT RE E ++
Sbjct: 124 GAEELAEAVRTIAGGETLLSPAATR--SLVARFLATPDESTPHDSARLAVLTPREREMVS 181

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  + +S  TV  ++   M K   + R+  +  A R  +V
Sbjct: 182 LVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTGLV 232


>gi|229004659|ref|ZP_04162396.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228756547|gb|EEM05855.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
          Length = 191

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L+    R +  + +    + A     +            EL+ RE+E L  I+ G T+ E
Sbjct: 83  LVETVRRGVQGESIMHPRVAARVVNEIRAMKQASPYPFSELSERELEVLRLIARGLTNAE 142

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA  L IS  TV  ++++I+ K     R+ A  +A    
Sbjct: 143 IAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFAWEQG 181


>gi|156976380|ref|YP_001447286.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116]
 gi|156527974|gb|ABU73059.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116]
          Length = 218

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  Y      +Y +    + ELT REV+ L  + +G ++ EIA  L IS +T+ +++ +I
Sbjct: 139 LLTYYKGKESNYIIEPAIEVELTRREVQVLQMLKDGGSNMEIADSLFISEHTIKSHLYNI 198

Query: 225 MRKTATKTRSGAIAYAVRN 243
            RK   K R+ A ++A RN
Sbjct: 199 FRKIEVKNRTQATSWAKRN 217


>gi|158313806|ref|YP_001506314.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158109211|gb|ABW11408.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 216

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L +  + A   A + +  DV       L+ RE E L  I+EG T+ +IA  L +S  TV 
Sbjct: 131 LLDPAVTARVLARLREGTDVGRASAV-LSTREREILVLIAEGLTNRQIAGRLHLSEKTVK 189

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNN 244
           NY++SI+ K    +R+ A  YA R +
Sbjct: 190 NYVSSILDKLGLSSRTQAAVYAARRH 215


>gi|295838502|ref|ZP_06825435.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197699551|gb|EDY46484.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 234

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 18/231 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P R   + R++ +D    +   + A  ++ G  H + V  +    +     V    P  +
Sbjct: 11  PERDAPVVRVLLVDDHRMFRAGVRAEIDHPG-EHGVTVVGEAADAEAAVRSVRELMPDVV 69

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH-----------TLPENITPPAGMDNRYCSLTF 135
           +  + L       +VLQR  EL   V                + I         Y +   
Sbjct: 70  LLDVHLPGGGG-LSVLQRCAELVMDVEKPVRFLALSVSDAAEDVIGVIRAGSRGYVTKAI 128

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +  +G  +   RL    +L A+  N     D    K   LT RE + L 
Sbjct: 129 NGTELVAAIHRV-KEGDAVFSPRLAGF-VLDAFSNNTVPPVDEELDK---LTQRERDVLR 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G +  EIA  L IS  TV +++++++RK     R     +A    +V
Sbjct: 184 LIARGHSYKEIAKELFISVKTVESHVSAVLRKLQLSNRHELTRWAAARRLV 234


>gi|297158982|gb|ADI08694.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 235

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 4/144 (2%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           + P  +    F          A   + +        R+   + ++     ++        
Sbjct: 78  RGPRIVMLTTFDLDEYVYDALAAGASGFLLKDMTAERLFEAVRVVAAGDALLAPTVTRR- 136

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+  +     + +         LT RE E L  I+EG ++ EIA  L +S  TV  +++
Sbjct: 137 -LIGEFV--RLRPHTAEPSPLALLTPRETEVLRLIAEGLSNAEIAARLTVSAETVKTHVS 193

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ K   + R+ A+  A    +V
Sbjct: 194 RVLAKLGARDRAQAVMLAYEFGLV 217


>gi|254562561|ref|YP_003069656.1| response regulator [Methylobacterium extorquens DM4]
 gi|254269839|emb|CAX25817.1| putative response regulator; input and output domains: CheY and
           LuxR family [Methylobacterium extorquens DM4]
          Length = 302

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A A
Sbjct: 233 RLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASA 292

Query: 239 YAVRN 243
            A R+
Sbjct: 293 VAARH 297


>gi|271964056|ref|YP_003338252.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507231|gb|ACZ85509.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 13/171 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  +++   D              P  +    F T            + +      
Sbjct: 49  PDIVLMDISMPRMDGLTAARKLLDWPDPPKVVMLTTFDTDENLYAALRAGTSGFLLKVSP 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLT 195
             ++   + ++         D L +  +     A+    +D        +LT RE+E L 
Sbjct: 109 PEQLVEAIRVVVGG------DALLDPAVTTRVIASFAGRHDPAPPPQLADLTPRELEVLR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++ G T+ EIA  L +   TV  ++A ++ K   + R+ A+ +A  + +V
Sbjct: 163 FLARGLTNAEIAGQLFVGEATVKTHVARVLMKLHLRDRAQAVVFAYESGVV 213


>gi|315121858|ref|YP_004062347.1| transcriptional regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495260|gb|ADR51859.1| transcriptional regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 235

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            F  L + I P AG      +    +   + G ++   +  ++  + + E    A YQ  
Sbjct: 104 FFIRLDKGILPFAG-----IAFPLRLGFHKNGYVVFTAECLMLANEVIIEAHG-ACYQVI 157

Query: 172 M--FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           M     +         LT RE  CL    +G TS+EIA  LG+S +TVN Y+ S   K  
Sbjct: 158 MGFLALFKKRSSAARNLTERETSCLQLAGDGYTSEEIAKKLGLSVHTVNAYLGSATVKLD 217

Query: 230 TKTRSGAIAYAVRNNIV 246
              R  AIA A+R   +
Sbjct: 218 AVNRIQAIAKAIRFGYI 234


>gi|316933442|ref|YP_004108424.1| autoinducer-binding domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315601156|gb|ADU43691.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 239

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 9/185 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--------FCPVFHTLPENITP 122
           E++L +++ S WP    R  +          +QR               V       +  
Sbjct: 54  EEQLSNVLMSRWPAAWSRRYSSKGYLTEDPTIQRVRSSIEAFEWSELSAVSIAARNIMEE 113

Query: 123 PAGMD-NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            A    N   ++           + +      +       + L+A Y             
Sbjct: 114 AADFGLNHGFTVPLHTLDGEYAALSIAGDRCELPASFRGVVQLMATYAFAKAIGQKRAIN 173

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE + L WI+EGKT  EI+ ILG+S + V+     +  K     R   I+ A+
Sbjct: 174 ASPRLTIREADVLHWIAEGKTDWEISQILGVSEHLVDKVARQLKDKFGAVNRVQMISCAM 233

Query: 242 RNNIV 246
           R  ++
Sbjct: 234 RLGVI 238


>gi|320011002|gb|ADW05852.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 226

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 13/178 (7%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNR 129
           S  P  ++  + + E D      +          RP  L    F              + 
Sbjct: 46  SVHPDVVLMDVRMPEMDGLAAARELLTPPKGAVHRPKVLMLTTFDVDDYVYEALRAGASG 105

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTG 188
           +       A +   + ++     ++         L+A +      +           LT 
Sbjct: 106 FLLKDAPPADLISAVRVVAAGDALLAPSVTRR--LIADFARRKPAAPSGGPALRLNGLTP 163

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  I+ G ++ EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 164 REREVLELIARGLSNQEIAARLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLV 221


>gi|111023879|ref|YP_706851.1| hypothetical protein RHA1_ro06927 [Rhodococcus jostii RHA1]
 gi|110823409|gb|ABG98693.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 530

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +AA  A   +           LT REVE L  +++G+++ EIA  L I+  T  N++  +
Sbjct: 439 VAAVLAAAGQRVSRRTPWPAGLTDREVEILRLVAQGRSNREIAADLFIAEKTARNHVERV 498

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K     R+ A   A+   +V
Sbjct: 499 YAKLGVNNRTQASLAAIDRGLV 520


>gi|330685558|gb|EGG97204.1| response regulator protein VraR [Staphylococcus epidermidis VCU121]
          Length = 209

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 4/90 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + ++E  +L   +  M K  +++      LT RE+E L  I++G ++ EIA    I+  T
Sbjct: 123 ESVFEPEVLVKMRNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASASHITIKT 178

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 179 VKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|108805307|ref|YP_645244.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766550|gb|ABG05432.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 229

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 6/163 (3%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            M   +  +        T +     H   + +            L     +  +  + + 
Sbjct: 65  QMDGLQATRVIKAEHPATAVLMVTTHASDDYLFEAIKAGASGYVLKEATKQQLVDSIRVT 124

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTS 203
            +G   +   L  I LL        +S +    K        LT RE+E L  ++ G  +
Sbjct: 125 LRGEPSINQELA-IQLLRRLAREAHESANSPPAKRLPELCEPLTPREIEILRLLARGLKN 183

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS  TV  ++  I+ K     R+ A   A+   I+
Sbjct: 184 RQIAEHLVISPGTVKVHVQHIIAKLGVSDRTQAAVRAIELGIL 226


>gi|319892925|ref|YP_004149800.1| Two component transcriptional regulator VraR [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162621|gb|ADV06164.1| Two component transcriptional regulator VraR [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464027|gb|ADX76180.1| two-component response regulator VraR [Staphylococcus
           pseudintermedius ED99]
          Length = 209

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 14/166 (8%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARI 140
            DLV    +   +    + +    +   +  +  E+      +D   + Y   T     I
Sbjct: 54  MDLV-MTDMDGVEATMQIKKDLPHIKVVMLTSYIEDKEVYRALDAGVDSYILKTTSANDI 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        +   + L +          M             LT RE+E L  IS+G
Sbjct: 113 AEAVRKTSRGESVFEAEVLVK----------MRNRMKQRAELYELLTEREMEILLLISKG 162

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++ ++
Sbjct: 163 YSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLI 208


>gi|317482273|ref|ZP_07941294.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916289|gb|EFV37690.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 248

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ E   +A     
Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMATNVGR 166

Query: 172 MFKSYDVHW-------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
              S             +  ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 167 PENSATTSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248


>gi|256391148|ref|YP_003112712.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357374|gb|ACU70871.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 2/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  +        L     L    F                +     
Sbjct: 52  DLVLMDIRMPVLDGLEATRLIAADPALGSVKVLILTTFEQDEYVAEALRAGAGGFLGKGV 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   + ++     ++         L+A + A    +          LT RE+E +T
Sbjct: 112 DPEELLRAIRIVAGGNSLLSPAATR--ALIARFLAQPSDTAPTVSAPLDALTARELEVVT 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G +++EIA  L ++  T   ++   M K   + R+  +  A  + +V
Sbjct: 170 LVATGLSNEEIAGQLFVTPLTAKTHVNRAMTKLGARDRAQVVVIAYESGLV 220


>gi|188582813|ref|YP_001926258.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179346311|gb|ACB81723.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 301

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A A
Sbjct: 232 RLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASA 291

Query: 239 YAVRN 243
            A R+
Sbjct: 292 VAARH 296


>gi|163847483|ref|YP_001635527.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222525334|ref|YP_002569805.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668772|gb|ABY35138.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449213|gb|ACM53479.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Chloroflexus sp. Y-400-fl]
          Length = 916

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 90/247 (36%), Gaps = 11/247 (4%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT-EYVGASHFLLVRW 66
           V  VL+  + Q       L     L+  ++       +         E++  +H+   R 
Sbjct: 672 VRAVLDGLESQIMIEQGDLEAAGQLITNIVATPSEFQYLPTAAFYAREHITRAHY-EWRL 730

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             +Q+   D     D   +L      +E  +  + L         +     +        
Sbjct: 731 AHYQDTG-DCQALHDLAMELSTPSG-TELWQRLSPLDAALLRGLALAAAGDDATEAILSA 788

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFK--SYDVH 179
            +   S        + G  L     +++ R RL     + + LL  Y+ +     S    
Sbjct: 789 LDLATSERIVTPFQQAGEPLRRILNQLLSRQRLPPFGEYLLSLLDDYEPSPIAVLSTPSS 848

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE+E L  ++EG+++ EIA  L I+ +TV +++ +I  K    +R+ A+A 
Sbjct: 849 DALPEPLSQREIEVLRLMAEGRSNQEIAGHLIIAISTVKSHVNNIFSKLGVASRTQAVAR 908

Query: 240 AVRNNIV 246
             R  ++
Sbjct: 909 GRRLGLI 915


>gi|325168564|ref|YP_004280354.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064287|gb|ADY67976.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 240

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 77/224 (34%), Gaps = 15/224 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMALS 93
           +   +   +    + +L    G   F+L      +E+ ++ I  +  DW F     +   
Sbjct: 17  IDAAETFQTIQTEVRSLVAPFGYDRFVLFSASAAREEPIERIYWIEGDW-FGNGDPVTEE 75

Query: 94  EKDKYYNVLQRPTELFCPVF--HTLPENITP------PAGMDNRYCSLTFDVARIRIGLM 145
              +   + +       P F   T  EN         P G       +         G M
Sbjct: 76  TYIRRCAITRHILGAREPFFWTKTFRENGELYRVVNLPRGPGIHGLQVPVFGPSGLEGAM 135

Query: 146 LLFPKGRIILRDRLWEIGLLA---AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L            W + LLA    Y A       V       L+ RE E LTW + G+ 
Sbjct: 136 SLGGTQINASPTTKWILTLLAVAAFYSARKLIEAPVASAIAV-LSDREREVLTWTAAGRR 194

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             EIA  LG+S  T+ N++  I  +    T + AI  A+RN  +
Sbjct: 195 QFEIAATLGLSERTIENHLRRIRHRLGVSTTAQAIRIAIRNGEI 238


>gi|166364716|ref|YP_001656989.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|159030578|emb|CAO88241.1| luxR [Microcystis aeruginosa PCC 7806]
 gi|166087089|dbj|BAG01797.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 210

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 67/177 (37%), Gaps = 14/177 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVF--HTLP-ENITPPAGMDNRY 130
           +  S  P  +V  + L   D       + +    +   +   HTL  E I   A   + Y
Sbjct: 41  LALSLRPDLVVMDIGLPRLDGIAATKQIKEGLANVHVVMLTSHTLQQEVIAALASGADAY 100

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGR 189
           C     + R       L            +    +A    +  K   V    +  L + R
Sbjct: 101 CIKGASLDR-------LLAAIEAAKDGATYLDPQIARLVMDNLKPPAVQPNPNLALLSER 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  I EGK++ EIA  L +S NT+  ++  IM K A   R  A   A+R+ IV
Sbjct: 154 EMEVLKLIVEGKSNAEIAEQLYLSTNTIKTHVRGIMNKLAVDDRVQAAVIALRSGIV 210


>gi|89053644|ref|YP_509095.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88863193|gb|ABD54070.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 243

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 67/157 (42%), Gaps = 6/157 (3%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPE-NITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           +S    ++ +     +L  P   T    +    +G+ +      F        + L F +
Sbjct: 81  MSRPFYWHEI----QDLIPPSAQTDAYLDRLRASGLGDGLAFYVFGPGLRNAYVGLGFGR 136

Query: 151 GRI-ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             + +  ++++ +  +A               K+  L+ RE + L WI++GK++  IA I
Sbjct: 137 PVVDLPPEQIFRLQCVAQAGHLRVCELSDQAPKEAALSPREKQVLDWIAKGKSNSVIAEI 196

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +S +TV+ ++ SI RK     R+ A    V + ++
Sbjct: 197 LAMSPHTVDAHVRSIYRKLDVTDRTSAALRGVGSGVL 233


>gi|289768783|ref|ZP_06528161.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289698982|gb|EFD66411.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 332

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D  +  L   V  +  G  LL P+             L+A +   
Sbjct: 197 VYDALAAGAGGFLLKDATFPELLHAVRVVAGGNALLSPEITK---------RLIAEFVHA 247

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 V    D  LT RE E LT I+ G ++ EIA  L I+ +TV  +I  +  K   +
Sbjct: 248 RGSRLPVPAAGD--LTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELR 305

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    +V
Sbjct: 306 DRAQAVIVAYELGLV 320


>gi|22125626|ref|NP_669049.1| transcriptional activator protein [Yersinia pestis KIM 10]
 gi|45442066|ref|NP_993605.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51596821|ref|YP_071012.1| quorum-sensing transcriptional activator YpeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108807950|ref|YP_651866.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Antiqua]
 gi|108812215|ref|YP_647982.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|145599154|ref|YP_001163230.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides F]
 gi|149365634|ref|ZP_01887669.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CA88-4125]
 gi|153948985|ref|YP_001400524.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162419359|ref|YP_001606210.1| LuxR family transcriptional regulator [Yersinia pestis Angola]
 gi|165927469|ref|ZP_02223301.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939475|ref|ZP_02228021.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008189|ref|ZP_02229087.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214550|ref|ZP_02240585.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402379|ref|ZP_02307842.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422303|ref|ZP_02314056.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167427015|ref|ZP_02318768.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469621|ref|ZP_02334325.1| transcriptional regulator, LuxR family protein [Yersinia pestis
           FV-1]
 gi|170023896|ref|YP_001720401.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186895898|ref|YP_001873010.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|218929546|ref|YP_002347421.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CO92]
 gi|229837989|ref|ZP_04458148.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895186|ref|ZP_04510361.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides A]
 gi|229898551|ref|ZP_04513696.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229902547|ref|ZP_04517664.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|294504217|ref|YP_003568279.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Z176003]
 gi|21958535|gb|AAM85300.1|AE013776_9 putative transcriptional activator protein [Yersinia pestis KIM 10]
 gi|6648672|gb|AAF21289.1| transcriptional activator YpeR [Yersinia pestis]
 gi|45436929|gb|AAS62482.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590103|emb|CAH21738.1| quorum-sensing transcriptional activator YpeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775863|gb|ABG18382.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|108779863|gb|ABG13921.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Antiqua]
 gi|115348157|emb|CAL21085.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CO92]
 gi|145210850|gb|ABP40257.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides F]
 gi|149292047|gb|EDM42121.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CA88-4125]
 gi|152960480|gb|ABS47941.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           IP 31758]
 gi|162352174|gb|ABX86122.1| transcriptional regulator, LuxR family [Yersinia pestis Angola]
 gi|165912524|gb|EDR31155.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920524|gb|EDR37801.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992571|gb|EDR44872.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204252|gb|EDR48732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958809|gb|EDR55830.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048212|gb|EDR59620.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167053994|gb|EDR63822.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750430|gb|ACA67948.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186698924|gb|ACC89553.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679994|gb|EEO76093.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|229688099|gb|EEO80170.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694355|gb|EEO84402.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701820|gb|EEO89844.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides A]
 gi|262362334|gb|ACY59055.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           D106004]
 gi|262366357|gb|ACY62914.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           D182038]
 gi|294354676|gb|ADE65017.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Z176003]
 gi|320014713|gb|ADV98284.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 245

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 9/120 (7%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           D+ +   + +V + +I ++L+F   +++          L     +   + +    K    
Sbjct: 132 DSIFFDESIEVNKEKIQMLLIFIHDKMLG---------LYNKSHHENNTLNKKENKREIF 182

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L W S GKT  EIA+ILGI ++TV  +I +I+RK        AI   +   ++
Sbjct: 183 SPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242


>gi|218531623|ref|YP_002422439.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218523926|gb|ACK84511.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
          Length = 300

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A A
Sbjct: 231 RLRERLPITGREAEVLLWLSRGKSSRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASA 290

Query: 239 YAVRN 243
            A R+
Sbjct: 291 VAARH 295


>gi|298243907|ref|ZP_06967714.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297556961|gb|EFH90825.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 514

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 39/75 (52%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +     +    ELT RE E L  +SEG T+  IA  L IS  TV  +I  IM+K   +
Sbjct: 440 QLEQQSFMFTLRLELTEREREVLRLMSEGLTNRAIASRLLISIETVKTHIHHIMQKLQAR 499

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+A A++  ++
Sbjct: 500 DRTQAVALAMKYGLI 514


>gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074734|gb|ADJ64133.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 318

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L W+ +GKT+ +IA ILG+S  TVN ++  I  K   +TRS A   A
Sbjct: 259 LTPRESDVLLWLGKGKTNRDIADILGMSPRTVNKHLEHIFVKLGVETRSAAAVLA 313


>gi|152974058|ref|YP_001373575.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152022810|gb|ABS20580.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 220

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 3/162 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           +R   ++  +    V  +  E+   +  T  ++      ++   + Y     +   I   
Sbjct: 55  IRMPRVNGVEGTRLVRGKFPEVKVLMLTTFNDSELIFEALEQGASGYLLKDMETDAIVQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           ++ +   G ++ +D   +I         +  S      +  +LT RE++ L  I  G  +
Sbjct: 115 ILTVHGGGAVLPQDITAQIVKELKRTKVVDTSEQSVPNQIEQLTEREIDVLREIGLGLNN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 175 KEIAEKLFITEGTVKNHVSNLIGKLELRDRTQAAIYAVRYGI 216


>gi|322690880|ref|YP_004220450.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455736|dbj|BAJ66358.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 248

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ E   +AA    
Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGA 166

Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
              S                ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 167 HGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 227 LAKINARDRVQAVVFAYENHLV 248


>gi|115359785|ref|YP_776923.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285073|gb|ABI90589.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 229

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 81/230 (35%), Gaps = 16/230 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++  +    C       +  +    G  H     + +      +    S++P   +    
Sbjct: 1   MVFEIGSCTCMDELGRMLIDIGHLAGFDHVCYQEYRMSGGTLKNCRTLSNYPEAWLSLYR 60

Query: 92  LSEKDKYYNVLQRPTELFCP------VFHTLPE----NITPPAGMDNRYCSLTFDVARIR 141
                    + Q       P      +F T  +    +     G+++   S         
Sbjct: 61  DRAYLTIDPIAQHALSSLMPLIWGDRIFATTEQREFRDEGRIYGLNDG-VSFPAHSRHGD 119

Query: 142 IGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +  +    + R +    +         L+A    +  +  +        L+ RE+E L W
Sbjct: 120 VACVSFVRQARALDDGDMPCDVPSWGALVANLMLDACRRLEAVQSDAPCLSTRELEILKW 179

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EGK++ +I+ I+ ++ + V ++I SIM+K    TR  A+  A R  ++
Sbjct: 180 VAEGKSTWDISRIVSLTEHGVLHHIRSIMKKFDVPTRRQAVLMASRFGLL 229


>gi|256378541|ref|YP_003102201.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922844|gb|ACU38355.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 226

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  + +      L     L    F      IT      + +     
Sbjct: 50  DVVLMDLRMPDVDGIEATRRICADERLAGVRVLVLTTFDDDENVITALQAGASGFLGKNV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D A +   + ++     ++        GL++A+ A          G D  +TGRE E + 
Sbjct: 110 DPAELVTAIRVVAEGNALLSPKATR--GLVSAFVAQSRPPAVAAPGLDL-VTGREREVMV 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++D IA  L +S  TV  ++   M K   + R+  +  A +N +V
Sbjct: 167 LVAHGMSNDAIARHLFLSPLTVRTHVNRAMAKLGARDRAQLVVIAYQNRLV 217


>gi|219683473|ref|YP_002469856.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621123|gb|ACL29280.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|289178826|gb|ADC86072.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 234

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 2/137 (1%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ E G+       
Sbjct: 98  VMSAINAGASGFLLKDTEPETLLNSIRTVHQGNAIIAPTATKRLIEKMMETGVTQEGPGR 157

Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                   +       LT RE E L  I+ G ++ EIA  L IS  TV  ++A I++K  
Sbjct: 158 QQSEVAAEYTDPELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKIN 217

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R  A+ +A  N++V
Sbjct: 218 ARDRVQAVVFAYENHLV 234


>gi|189439534|ref|YP_001954615.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|189427969|gb|ACD98117.1| Putative response regulator [Bifidobacterium longum DJO10A]
          Length = 248

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ E   +A     
Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMATNVGR 166

Query: 172 MFKSYDVHW-------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
              S             +  ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 167 PENSATTSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248


>gi|296331918|ref|ZP_06874383.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673530|ref|YP_003865202.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150996|gb|EFG91880.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411774|gb|ADM36893.1| two-component response regulator (paired with YfiJ) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 220

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAYQA 170
           +   L E  +     D    ++   V  ++ G M+L P+    +L D   E  L   ++ 
Sbjct: 90  IAEALEEGASGYLLKDMSADTIVKAVMTVQSGGMVLPPELTAQMLNDLKREKQLKGIHEK 149

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              K          +LT RE+E L  +  G  + EIA  L I+  TV N++++I+ K + 
Sbjct: 150 EKPKEL-------LDLTEREMEVLAELGYGLNNKEIAEKLFITEGTVKNHVSNIISKLSV 202

Query: 231 KTRSGAIAYAVRNNI 245
           + R+ A  Y+VR  +
Sbjct: 203 RDRTQAAIYSVRYGV 217


>gi|226860311|gb|ACO88865.1| transcriptional regulatory protein [Microbacterium sp. MA1]
          Length = 228

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 5/160 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +R +           L+ P  +           ++           L    A   I  + 
Sbjct: 69  MRNIDGITATTMVQSLREPPPVLVLTTFDDDVLLSRVLRAGAAGFILKDSPAEALIWAVR 128

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              +    L   + E  +L  ++    +   V      ELT RE + L  I+ G+T+ EI
Sbjct: 129 AVVRDGAFLDPAVTER-VLQGFRRAGREQVPVAP----ELTDRESDVLRLIARGQTNTEI 183

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  LGIS  TV +++  I  K   + R+ AI YA  + +V
Sbjct: 184 ASTLGISSVTVKSHVNHIFTKLDLRDRAAAIVYAFDHGLV 223


>gi|294627058|ref|ZP_06705648.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598720|gb|EFF42867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 213

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +       L  P  +    F      +         Y     
Sbjct: 49  DVVLMDMRMPVMSGLEALQMLSRNGAL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + ++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 107 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|269929142|ref|YP_003321463.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788499|gb|ACZ40641.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 212

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ LT ++ G  + EIA  L I+  TV  +  +I RK     R+ A++ A++
Sbjct: 147 EEELTARELDVLTLMARGLRNKEIAYELSITERTVKFHANAIYRKLDVSGRTEAVSKAIQ 206

Query: 243 NNIV 246
             +V
Sbjct: 207 RGLV 210


>gi|307151536|ref|YP_003886920.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306981764|gb|ADN13645.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 232

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 51/135 (37%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V              +     L   +   + G   L P    I+  ++    +       
Sbjct: 97  VLAAFAAGADSYCMKNISIELLLEAIKATQEGNSWLDPAIARIVISQVQSPKIKIPKDLE 156

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +      G+ + LT RE+E L  I +G ++  IA  L I+  TV  ++ +I+ K    
Sbjct: 157 LLEPESNVRGETYSLTERELEVLQLIVDGYSNAAIADKLFITVGTVKTHVRNILNKLCAD 216

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   A+R  +V
Sbjct: 217 DRTQAAVRALRAGLV 231


>gi|148560233|ref|YP_001258220.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148371490|gb|ABQ61469.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella ovis ATCC 25840]
          Length = 235

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAY-QANMFKSYDVHWGK--- 182
            S     A+   GL+     G  +    +     ++ ++      +M++  DV       
Sbjct: 112 ISQPCWAAQGVFGLLSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIG 171

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE E L W SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A  
Sbjct: 172 DVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVKAVAKART 231

Query: 243 NNIV 246
             ++
Sbjct: 232 FGLL 235


>gi|320323453|gb|EFW79538.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 240

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L   GR I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  +S +TV  ++ +I  K     R+  +  A+   ++
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQTVGEALCRGLI 239


>gi|309792814|ref|ZP_07687256.1| regulatory protein LuxR [Oscillochloris trichoides DG6]
 gi|308225126|gb|EFO78912.1| regulatory protein LuxR [Oscillochloris trichoides DG6]
          Length = 464

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              +  ++ RE E L  ++ G ++ +IA  L IS NTV  ++ +I  KT   +R+ A  Y
Sbjct: 1   MSNENPISEREREILKLVATGASNQQIAQQLNISVNTVKVHVRNIFSKTGVMSRTEATIY 60

Query: 240 AVRNNIV 246
           A+ +  V
Sbjct: 61  AINHGFV 67


>gi|229115740|ref|ZP_04245143.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228667725|gb|EEL23164.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 211

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV+  
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209


>gi|21241983|ref|NP_641565.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107378|gb|AAM36101.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 214

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +       L  P  +    F      +         Y     
Sbjct: 50  DVVLMDMRMPVMSGLEALQMLSRNGAL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + ++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 108 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 163

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 164 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 214


>gi|148242532|ref|YP_001227689.1| two component system response regulator [Synechococcus sp. RCC307]
 gi|147850842|emb|CAK28336.1| Possible two component system response regulator [Synechococcus sp.
           RCC307]
          Length = 235

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 170 ANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           A  F   D   G +   +L+ RE E L  +SEG  + EIA  L IS+ TV  ++++++ K
Sbjct: 154 AAAFHPDDEAEGLEALDQLSSREQEVLQALSEGYCNREIAQRLFISQETVKTHVSTVISK 213

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+ A   A+R  ++
Sbjct: 214 LGVRDRTQAAVMALRMGLL 232


>gi|238059358|ref|ZP_04604067.1| sensor transduction protein [Micromonospora sp. ATCC 39149]
 gi|237881169|gb|EEP69997.1| sensor transduction protein [Micromonospora sp. ATCC 39149]
          Length = 221

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 3/176 (1%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++    +V  D     +  +  + +        RP  L    F T  +         + +
Sbjct: 45  DRVEADVVVMDIRMPTMDGVEATRRICADRPGDRPRVLVLTTFDTEADAFAALQAGASGF 104

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   + ++     ++       +    A Q     + D       +LT RE
Sbjct: 105 LLKNVPPEELLAAIRVVAEGDSVVAPSITRRLLDRFAGQFGPGPAADPRLA---QLTERE 161

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  +++G ++ EIA  + ++  TV  ++  I+ K   + R  A+  A  + +V
Sbjct: 162 REVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLRLRDRVQAVVLAYESGLV 217


>gi|242371807|ref|ZP_04817381.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242350508|gb|EES42109.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 212

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 4/90 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + ++E  +L   +  M K  +++      LT RE+E L  I++G ++ EIA    I+  T
Sbjct: 126 ESVFEPEVLVKMRNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASASHITIKT 181

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 182 VKTHVSNILSKLEVQDRTQAVIYAFQHNLI 211


>gi|5162957|gb|AAD40485.1|AF079973_1 luxR homolog YpsR [Yersinia pseudotuberculosis]
          Length = 245

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           D+ +   + +V + +I ++L+    +++          L     +   + +    K    
Sbjct: 132 DSIFFDESIEVNKEKIQMLLILFHDKMLG---------LYNKSHHENNTLNKKENKREIF 182

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L W S GKT  EIA+ILGI ++TV  +I +I+RK        AI   +   ++
Sbjct: 183 SPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242


>gi|82701372|ref|YP_410938.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82409437|gb|ABB73546.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 267

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 4/153 (2%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V  +   +   +    +    +   +FH + +       +   + S         I + +
Sbjct: 111 VSGILQGDGAAHCPFGRALRNMRSSLFHGISDERGHHDCLYVVFSSKDKLDDSTLIAMEI 170

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L P     L   L  +  L  +        D        L+ REVE +TW+ +GKT+ EI
Sbjct: 171 LLPY----LDTALRRVTPLPQHSCRPSLLADAPEYDLHGLSEREVEIMTWVRKGKTNAEI 226

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             IL IS  TV N++  I RK     R  AI+ 
Sbjct: 227 GSILRISSYTVKNHLHQIFRKLDVYNRVQAISK 259


>gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 226

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 17/210 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           A++ Y+  S F +      Q       + +  P  ++  + + + D Y     V Q+P  
Sbjct: 17  AVSAYLEDSGFEVTAVANAQAAL--EYLETHVPDVIITDIMMPQMDGYAFLETVRQQPHL 74

Query: 108 LFCPVFHTL-----PENITPPAGMDNRYCSLTFDVARIRI---GLMLLFPKGRIILRDRL 159
              PV          + I       + Y +  FD   +      L+      R      L
Sbjct: 75  SHIPVIFLTARGMTRDRIQGYDAGCDAYLAKPFDPDELVAIIKNLLRRQAAARDEAEPNL 134

Query: 160 WEIGL----LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            E+      L A      K +        +LT RE   L  + +G  + EIA  L  S  
Sbjct: 135 AELAQQIAELRAMLVQQGKRHPTAPPIQLDLTPREASVLQLVVKGLMNKEIASQLNTSVR 194

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  Y++ +  KT T +R+  + +A+ + +
Sbjct: 195 NIEKYVSRLFVKTGTSSRTELVRFALEHGL 224


>gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 214

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 71/201 (35%), Gaps = 22/201 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC--- 110
           +Y+    + ++      E    +++    P  ++  + + + D Y  V     +      
Sbjct: 28  DYLEMQGYRVLTAAHGNEGL--AMLQQQTPDLVICDVMMPQMDGYSFVSAVRQQTHLSWL 85

Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           PV     +      I       + Y    F+   +   +  L  +       RL E    
Sbjct: 86  PVLFLSAKGQTHDRIKGLQTGGDVYLVKPFEPEELLAQIQALLKQ-----TARLREAQ-- 138

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                              ELT  E   L +++ G ++ EIA  L +S+ TV +++++++
Sbjct: 139 -----GRQALPGPTPPPGIELTPTETRILQYVARGMSNREIAAELHVSQRTVESHVSNML 193

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            KT    R+    +A+  + V
Sbjct: 194 GKTGCHNRTELARWAIDYHYV 214


>gi|296139134|ref|YP_003646377.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027268|gb|ADG78038.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 222

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 10/222 (4%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV-- 87
           +D   R++ +D      + +  +        F +V      ++   ++  S     L+  
Sbjct: 2   TDEPIRLLLVDDQDLVRVGLRRILRR--RDGFEVVGECADGDEVPAAVAESRPDVVLMDL 59

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGL 144
           R   +S  +    + +R       V  T  ++    A +      +         +   +
Sbjct: 60  RMKRVSGMEATRRLGERTDAPPVLVLTTFRDDDLLSAALRAGVAGFVLKDSPAEELIRAV 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L+     ++       +  L  Y+A    +     G    LT REV+ L  +  G ++D
Sbjct: 120 RLVAAGEAVLDPAVTGRV--LQTYRAARQPAT-TRAGAVDPLTAREVDVLGLVGRGLSND 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L IS  TV ++I SI  K   + R+ AI +A  N +V
Sbjct: 177 DIAAELVISIVTVKSHIGSIFTKLGVRNRAEAIVWAFDNGVV 218


>gi|285017693|ref|YP_003375404.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283472911|emb|CBA15416.1| probable two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 213

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 84/217 (38%), Gaps = 7/217 (3%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R+  +D        + +L    G    +    D  Q   L   VS D     +R  A+
Sbjct: 1   MIRVCLVDDQTLVRQGIRSLLALDGGIEVVAEACDGRQAVDLIPQVSPDVVLMDMRMPAM 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFP 149
           S  +    + +        +  T  ++    AG+      Y      + ++   +  +  
Sbjct: 61  SGLEALQLLSRAAALPPTIILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTVAA 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G ++         LL+  +    ++  V   +   LT RE E L  ++ G ++ EIA  
Sbjct: 121 GGSLVQPVVTQR--LLSGLE--QMRNDFVSLDRPDPLTDRETEILRLMASGFSNKEIANS 176

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 177 LGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|302205480|gb|ADL09822.1| Response regulator [Corynebacterium pseudotuberculosis C231]
 gi|308275716|gb|ADO25615.1| Response regulator [Corynebacterium pseudotuberculosis I19]
          Length = 234

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D     L   V  +     ++ P     L  R+       + Q +
Sbjct: 96  VMEAVENGASGFLLKDTAPEELIEAVRSVGEQSAVISPAATAKLFRRIR------SGQTD 149

Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                  H  +D    LT RE+E L  I+ GK++ EIA  L IS  TV  ++  ++ KT 
Sbjct: 150 KKPDGLKHINEDLIEPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTG 209

Query: 230 TKTRSGAIAYAVRNNIV 246
           ++ R  A+ +A +  +V
Sbjct: 210 SRDRVHAVLFAFKRGVV 226


>gi|302548323|ref|ZP_07300665.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302465941|gb|EFL29034.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 226

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 7/173 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D        +A +        L     L    F T            + +     
Sbjct: 50  DIVLMDIRMPGTDGLAATSAICADPELAATRVLILTTFETEDYVAQALRAGASGFLGKDV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVE 192
               +  GL  +     ++         L+  +   M  +   H        ELT RE E
Sbjct: 110 TADTLLAGLRTVASGEALLSPAATR--TLITNFL--MTPAPGTHLAPPQSLSELTDRERE 165

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +   +EGK++ EIA IL +S  TV  +I   M K   + R+  +  A +  +
Sbjct: 166 VMGLAAEGKSNTEIAEILVLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTGL 218


>gi|134287108|dbj|BAF50712.1| putative two component regulator [Streptomyces virginiae]
          Length = 277

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 40/73 (54%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+  +V      ELT RE E L  I+ G ++ EIA  L +S +TV +++ +++ K   ++
Sbjct: 201 FRRAEVSDVDPDELTARESEVLDLIARGLSNAEIAGALMLSEHTVKSHVQNLLGKLRLRS 260

Query: 233 RSGAIAYAVRNNI 245
           R  A+ YA    +
Sbjct: 261 RVQAVVYAYEIGL 273


>gi|158314991|ref|YP_001507499.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158110396|gb|ABW12593.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 223

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + VR          + +++  P   V  +   + D+Y             VF  L    +
Sbjct: 53  MDVRMPGVDGITATAQITARHPASRVLILTTFDVDQY-------------VFDGLRAGAS 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                D     L   +  +  G  +L P     L DR       AA  A+          
Sbjct: 100 GFLLKDAAPGELVNAIRTVARGDAVLGPTAARRLVDRF------AALPADSGSDRAARPE 153

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +LT RE E    ++ G ++ EIA  L +S +TV  ++  I+ K   + R  A+  A 
Sbjct: 154 IVHDLTEREREVFLLVARGYSNREIAGRLHLSEHTVKVHVGRILAKLDLRDRIQAVVLAY 213

Query: 242 RNNIV 246
            + +V
Sbjct: 214 ESGLV 218


>gi|170751099|ref|YP_001757359.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657621|gb|ACB26676.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 196

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +  +LA    +  ++      +D    LTGRE E LTW S GKTS EIA+IL +   TVN
Sbjct: 108 DFEMLAVVVEHRLRAGRGGQSQDAFGHLTGREREVLTWASRGKTSAEIALILDLRERTVN 167

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +    M++     R+ A+A A+   ++
Sbjct: 168 FHFDQAMKRLNVVNRTHAVARALSLRLI 195


>gi|83588897|ref|YP_428906.1| two component LuxR family transcriptional regulator [Moorella
           thermoacetica ATCC 39073]
 gi|83571811|gb|ABC18363.1| two component transcriptional regulator, LuxR family [Moorella
           thermoacetica ATCC 39073]
          Length = 221

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 84/223 (37%), Gaps = 15/223 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +  R++ +D        + AL E       VG +        L +E + + +V      D
Sbjct: 1   MAIRVMLVDDHALVREGLRALLEREGDIEVVGETGSAAGVLALAEESRPEVVV-----MD 55

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           L      +  +    ++++  E+   +   +   E +        R   L          
Sbjct: 56  LQLGAGRNGVEATRELVEKKPEIKVVILSMYDDEELVFRALESGARGYVLKRAGIEELTT 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            + L  +G   L  ++    +    +   F       G   ELT RE+E L   +EG T+
Sbjct: 116 AIRLVARGEAYLDPQIARRVIEGLQERLPFTRASRPEGP--ELTERELEVLRLAAEGLTN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  + A+IM+K     R   + YA++N I+
Sbjct: 174 AEIARRLVISVKTVQAHRANIMQKLGLHDRVDLVKYAIKNGIL 216


>gi|37676043|ref|NP_936439.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|37200583|dbj|BAC96409.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
          Length = 219

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 44/82 (53%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L +Y      +       D ELT RE++ L ++  G ++ EIA  L IS +T+ +++
Sbjct: 137 MMQLISYYEEKGGAKKEEPQLDIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHL 196

Query: 222 ASIMRKTATKTRSGAIAYAVRN 243
            +I RK   K R+ A A+A RN
Sbjct: 197 YNIFRKIDVKNRTQATAWAKRN 218


>gi|329939330|ref|ZP_08288666.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301559|gb|EGG45453.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 224

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 5/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143
           +R   L   D    V++   +    V  T   +      +    + +        ++   
Sbjct: 59  IRMPRLGGIDATERVIRSAPDTKVLVLTTFDLDEYVYDALRAGASGFLLKDASAEQLAEA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++         L+  +             +   LT RE E L  I++G ++
Sbjct: 119 VRVVAAGDGLLAPGVTRR--LITEFTRMRSGPRSPLKERVGTLTERETEVLALIAQGLSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  ++  I+ K   + R+ A  YA  + +V
Sbjct: 177 AEIAERLCVAEQTVKTHVGRILVKLGLRDRTQAAVYAFESGVV 219


>gi|325914881|ref|ZP_08177216.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538972|gb|EGD10633.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 213

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +          P  +    F      +         Y     
Sbjct: 49  DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + ++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 107 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|226311708|ref|YP_002771602.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094656|dbj|BAH43098.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 215

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 6/139 (4%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   V   + + IT        Y     +       L  L  +   + R+      +   
Sbjct: 81  VILSVSDDVADLITAIQFGAQGYLLKNLEPDDWINYLHALLGEDSELTRE------MATR 134

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                 +           LT RE E + ++  GKT+ EI+  L I+ NTV N++ +I+ K
Sbjct: 135 LMYRFRQEEATDEMVPAVLTPREREIVMYVGAGKTNREISEALIIAENTVKNHLKNILEK 194

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R    AYAVR+++V
Sbjct: 195 LQLANRVQLAAYAVRHHLV 213


>gi|186682209|ref|YP_001865405.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464661|gb|ACC80462.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 232

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 8/171 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGM---DNR 129
            +V+   P  ++  + + E D       ++Q    +   V  T  ++      M      
Sbjct: 48  ELVAELQPDVVLMDIRMPEMDGRTATKLIMQSFPNIKVLVLSTFDDDSYLTGAMRAGAKG 107

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y       + +   +      G       L++  LL    A+   + +    K  E+T R
Sbjct: 108 YLLKDMPSSELADAIRF-GHSGYTQFGPGLFD-KLLVTEAASASANQNSASSKPSEITAR 165

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           E E L  I  G T+ EIA  L I+  TV  ++ SI+ +   K RS    YA
Sbjct: 166 EQEVLCLIGVGATNREIAQQLYITEGTVKTHVTSILSRLNLKNRSQLAIYA 216


>gi|317125008|ref|YP_004099120.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589096|gb|ADU48393.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 228

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 8/134 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D R   L   V  +      + P     L   L EI      QA 
Sbjct: 93  VLEALRNGAHGYLLKDLRPEQLYDMVRSVMRNETPISPGVAGRL---LREI-----RQAG 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +        +  +T RE+E L  ++EG ++ EIA  L I+  TV N++ + + K    
Sbjct: 145 KPRVTSPAATTEQSVTRRELEILRLVAEGLSNKEIAKRLVITEGTVKNHVHNALEKLHMD 204

Query: 232 TRSGAIAYAVRNNI 245
            R  A AY +R  +
Sbjct: 205 NRIQAAAYVIRQGL 218


>gi|294853143|ref|ZP_06793815.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR
           [Brucella sp. NVSL 07-0026]
 gi|294818798|gb|EFG35798.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR
           [Brucella sp. NVSL 07-0026]
          Length = 268

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132
           D  V    P   V   +         V     +   P +      I      D   C   
Sbjct: 67  DLTVLMTLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 122

Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168
             L  D  +  +G + +    R                       + R R   + L    
Sbjct: 123 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 182

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
              +    D +      LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K 
Sbjct: 183 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 241

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+A A+   I+
Sbjct: 242 NCSNRTSAVATALSLGII 259


>gi|291444348|ref|ZP_06583738.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291347295|gb|EFE74199.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 225

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 10/176 (5%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRY 130
             P  ++  + + E D      +          RP  L    F              + +
Sbjct: 43  HHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLTTFDVDDYVYEALRAGASGF 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  A +   + ++     ++       +    A Q     +      +   LT RE
Sbjct: 103 LLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPAGATRTGQALRLNGLTPRE 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I+ G ++ EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 163 SEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 218


>gi|23499883|ref|NP_699323.1| LuxR family transcriptional regulator [Brucella suis 1330]
 gi|62317073|ref|YP_222926.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269066|ref|YP_418357.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|161620206|ref|YP_001594092.1| regulatory protein LuxR [Brucella canis ATCC 23365]
 gi|163844315|ref|YP_001621970.1| hypothetical protein BSUIS_B0125 [Brucella suis ATCC 23445]
 gi|189022339|ref|YP_001932080.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225685981|ref|YP_002733953.1| regulatory protein LuxR [Brucella melitensis ATCC 23457]
 gi|254691441|ref|ZP_05154695.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|254695262|ref|ZP_05157090.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|254698360|ref|ZP_05160188.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|254711984|ref|ZP_05173795.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|254715054|ref|ZP_05176865.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|254731805|ref|ZP_05190383.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|256043041|ref|ZP_05445986.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|256059638|ref|ZP_05449835.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|256111973|ref|ZP_05452924.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|256256626|ref|ZP_05462162.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|256262895|ref|ZP_05465427.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260544312|ref|ZP_05820133.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260564274|ref|ZP_05834759.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260568545|ref|ZP_05839014.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260757058|ref|ZP_05869406.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|260759571|ref|ZP_05871919.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|260762815|ref|ZP_05875147.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882868|ref|ZP_05894482.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|261215627|ref|ZP_05929908.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|261216761|ref|ZP_05931042.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|261319628|ref|ZP_05958825.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|261323608|ref|ZP_05962805.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|265989480|ref|ZP_06102037.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993421|ref|ZP_06105978.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|297249982|ref|ZP_06933683.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196]
 gi|75505158|sp|Q579W9|VJBR_BRUAB RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|81751697|sp|Q8FXF9|VJBR_BRUSU RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|123754460|sp|Q2YJ50|VJBR_BRUA2 RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|190360175|sp|Q8YAY5|VJBR_BRUME RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|23463458|gb|AAN33328.1| transcriptional regulator, LuxR family [Brucella suis 1330]
 gi|62197266|gb|AAX75565.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82939340|emb|CAJ12284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           biovar Abortus 2308]
 gi|161337017|gb|ABX63321.1| regulatory protein LuxR [Brucella canis ATCC 23365]
 gi|163675038|gb|ABY39148.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020913|gb|ACD73634.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225642086|gb|ACO01999.1| regulatory protein LuxR [Brucella melitensis ATCC 23457]
 gi|260097583|gb|EEW81457.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260151917|gb|EEW87010.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260155210|gb|EEW90291.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669889|gb|EEX56829.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|260673236|gb|EEX60057.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677166|gb|EEX63987.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|260872396|gb|EEX79465.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|260917234|gb|EEX84095.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|260921850|gb|EEX88418.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|261292318|gb|EEX95814.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|261299588|gb|EEY03085.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|262764291|gb|EEZ10323.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|263000149|gb|EEZ12839.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092732|gb|EEZ16941.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|297173851|gb|EFH33215.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196]
 gi|326410305|gb|ADZ67369.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326553598|gb|ADZ88237.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           M5-90]
          Length = 259

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132
           D  V    P   V   +         V     +   P +      I      D   C   
Sbjct: 58  DLTVLMTLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 113

Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168
             L  D  +  +G + +    R                       + R R   + L    
Sbjct: 114 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 173

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
              +    D +      LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K 
Sbjct: 174 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 232

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+A A+   I+
Sbjct: 233 NCSNRTSAVATALSLGII 250


>gi|134298790|ref|YP_001112286.1| response regulator receiver protein [Desulfotomaculum reducens
           MI-1]
 gi|134051490|gb|ABO49461.1| response regulator receiver protein [Desulfotomaculum reducens
           MI-1]
          Length = 119

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           MDN    + F    + I           + +   + + ++ +    + ++         +
Sbjct: 1   MDNIGTIIQFGTNDVGINCFCKKVIEEALSQG--YRLIVIDSKVEYVKENGKERTSNVNQ 58

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  I++G ++  IA  L IS  TV N++ SI  K     R+ A  YAV N
Sbjct: 59  LTNREFELLKLIAKGISNKAIAKQLFISEKTVKNHLTSIYSKLGVTNRTEATLYAVNN 116


>gi|219849447|ref|YP_002463880.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543706|gb|ACL25444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Chloroflexus aggregans DSM 9485]
          Length = 917

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  ++EG+++ EIA  L I+ +TV ++I +I  K    +R+ A+A   R  
Sbjct: 855 PLSQREIEVLRLMAEGRSNHEIATSLVIAVSTVKSHINNIFNKLGVASRTQAVARGRRLG 914

Query: 245 IV 246
           ++
Sbjct: 915 LI 916


>gi|90022619|ref|YP_528446.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952219|gb|ABD82234.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 303

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F +T RE +   W+++GKT+ EIA I+ IS  TVN ++  + +K A   R+ A A A+
Sbjct: 236 EQFGITKRESDVFLWLAKGKTNREIAQIIDISPRTVNKHLEQLFKKLAVDNRTTAAAMAI 295

Query: 242 R 242
           +
Sbjct: 296 Q 296


>gi|84624990|ref|YP_452362.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166711074|ref|ZP_02242281.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188575549|ref|YP_001912478.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|289665304|ref|ZP_06486885.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|84368930|dbj|BAE70088.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188520001|gb|ACD57946.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 213

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +          P  +    F      +         Y     
Sbjct: 49  DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + ++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 107 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|326329284|ref|ZP_08195609.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325952859|gb|EGD44874.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 231

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 6/169 (3%)

Query: 83  PFDLV-RCMALSEKDK-YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           P D+V   + + + D      L R      PV      +         R  +  F +   
Sbjct: 60  PADVVVMDLRMRQVDGITATGLVRALPEAPPVLVLTTFDEDELVSGALRAGAAGFILKDS 119

Query: 141 RIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
               +++  +   +    L       +LA Y+ +          +  ELT RE+E L  +
Sbjct: 120 PAEELVMAVRSVALGDAWLDPAITGRVLATYR-SAVAPPASRAVEVSELTDRELEVLRGL 178

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G T+ EIA  L IS  TV ++I  I  K   + R+ AI +A  + IV
Sbjct: 179 ASGWTNSEIAERLVISELTVKSHIGRIFAKLDLRDRAAAIVFAYDHGIV 227


>gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
 gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
          Length = 234

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 19/189 (10%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENIT-----PPAGMD 127
            ++  + P  ++  + + + D Y     + + P     PV     + +T           
Sbjct: 44  ELLQKNPPDLVISDIMMPQVDGYQFLSQMREDPRFKAMPVVFLTAKGMTTDRIQGYQAGC 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKG----RIILRDRLWEIGLLAAYQANMF-------KSY 176
           + Y S  FD   +   +  L  +              +I  LA   A +           
Sbjct: 104 DAYISKPFDPDELVAIVTNLLVRRAAAKESGENTETPDITALANQMARIESFLTGRSAIA 163

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  
Sbjct: 164 QSPSPIKIDLTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTEL 223

Query: 237 IAYAVRNNI 245
           + YA+ + +
Sbjct: 224 VRYALEHGL 232


>gi|194364877|ref|YP_002027487.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347681|gb|ACF50804.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 213

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +       L  P  +    F      +         Y     
Sbjct: 49  DVVLMDMRMPVMSGLEALQMLSRQEQL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +A++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 107 TLAQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNDFVSLDRPDPLTDRETEILR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|302524082|ref|ZP_07276424.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302432977|gb|EFL04793.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 178

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             R   +  LA   A+    +         +LT RE++ L  +S+GK++ +I   L +S 
Sbjct: 86  ASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 145

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  +   + RK   + R+ A+A+  R  +V
Sbjct: 146 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 177


>gi|229161240|ref|ZP_04289227.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228622336|gb|EEK79175.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 211

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  
Sbjct: 144 KENPFAMLTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQAAL 203

Query: 239 YAVRNN 244
           YAV++ 
Sbjct: 204 YAVKHR 209


>gi|315503162|ref|YP_004082049.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315409781|gb|ADU07898.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 225

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 1/171 (0%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  + +         P  L    F              + +     
Sbjct: 52  DVVLMDVEMPVLDGLEATRRITADATPGGPAVLILTTFDRDDYLFAALRAGASGFLLKNG 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + ++     +I    L    +    +         H     +LT RE E L 
Sbjct: 112 TPEDLIDAVRVVARGEGLI-ASALTRRVISTFARPGAAPPDPRHDAATADLTPREREVLE 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA +L +   TV  +++ ++ K   + R  A+ +A  + +V
Sbjct: 171 LVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV 221


>gi|171912646|ref|ZP_02928116.1| methyl-accepting chemotaxis sensory transducer [Verrucomicrobium
           spinosum DSM 4136]
          Length = 331

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 34/64 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                  D  LT RE E L W+ EGK++ EI VILGIS +TV  ++  ++ K   + R  
Sbjct: 258 DGSPQAPDETLTAREKEVLEWMQEGKSNPEIGVILGISTHTVKRHVERVLAKLGVENRVA 317

Query: 236 AIAY 239
           A  Y
Sbjct: 318 AALY 321


>gi|148557255|ref|YP_001264837.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148502445|gb|ABQ70699.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 301

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 162 IGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           + ++A Y  N   + +     +   L+ RE+ECLTW + GKT ++IAVIL +S +TV  Y
Sbjct: 213 LAMIANYFDNFAIRRFGGPPKESQSLSKRELECLTWSARGKTVEDIAVILDLSADTVRVY 272

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +  + +K     RS A+A A+   ++
Sbjct: 273 LKRVNQKLDAVNRSHAVAKAMCLGMI 298


>gi|148657524|ref|YP_001277729.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148569634|gb|ABQ91779.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 223

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  L          D     +   V  +  G  L+ P    I R  + E   LAA   +
Sbjct: 90  IFEGLKAGARGYLLKDISSEEMAEAVRTVARGEALIQPS---IARKVVAEFSRLAA--GS 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE++ L  ++ G ++ EIA  L I+  TV  +I++I+ K   +
Sbjct: 145 PPAPERSPLKLPAALTERELDVLKALARGMSNKEIAAALVITEGTVKTHISNILAKLDVR 204

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A +  ++
Sbjct: 205 DRTQAVLKAQQLRLL 219


>gi|23465503|ref|NP_696106.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|239621956|ref|ZP_04664987.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|23326161|gb|AAN24742.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|239515147|gb|EEQ55014.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 248

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ E   +AA    
Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGA 166

Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
              S                ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 167 HGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 227 LAKINARDRVQAVVFAYENHLV 248


>gi|291299414|ref|YP_003510692.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568634|gb|ADD41599.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 3/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +    F              + +        R+   + ++     ++         L
Sbjct: 80  PRVIILTTFDLDEYVYDALRAGASGFLLKDVTAERLFDAVRVVAAGEALLAPTVTRR--L 137

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +  +      V   +   LT RE E L  ++EG ++ E+A  L +S  TV  +++ +
Sbjct: 138 IGEFVQSKQPRP-VADARLASLTPRETEVLRLVAEGLSNPELAARLTVSEETVKTHVSRV 196

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R+ A+  A  + +V
Sbjct: 197 LHKLGLRDRTQAVVAAYESGLV 218


>gi|225352800|ref|ZP_03743823.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156407|gb|EEG69976.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 248

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ E   +AA    
Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGR 166

Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
              S                +LT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 167 PENSATTSTTDSTYTDPELDDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 227 LAKINARDRVQAVVFAYENHLV 248


>gi|229096760|ref|ZP_04227730.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228686602|gb|EEL40510.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 211

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV+  
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209


>gi|126724411|ref|ZP_01740254.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126705575|gb|EBA04665.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 238

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 23/192 (11%)

Query: 60  HFL---LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           H++   L R D    Q   SI   DW         LS  + + +V  R  +     F   
Sbjct: 62  HYMRMNLHRVDPTIHQSARSIAPVDW-------TRLSRGESFNSVFYRAND-----FGLT 109

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            + +T P            DV  + +       + +++ RD++ E+ + A +  +     
Sbjct: 110 DQGLTVPVRGPFG------DVGLLSVTRSCSEREWKLLTRDKISELQMAAVHLHDSVMQS 163

Query: 177 DV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           DV     +   L+ RE E L W + GKT  +I  IL IS  TV  ++ S   K    T  
Sbjct: 164 DVLSRALRRPSLSARETEVLQWTAIGKTQQDIGDILSISHRTVEVHMRSAREKLGALTTI 223

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 224 QAVGRAIGYQII 235


>gi|37223220|gb|AAQ90208.1| LuxR [Aliivibrio fischeri]
 gi|37223236|gb|AAQ90218.1| LuxR [Aliivibrio fischeri]
 gi|37223247|gb|AAQ90225.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++            +  +T+ V   ++LL         K D  +  ++P    +   
Sbjct: 14  IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140
            +   KY  ++        P+   + EN        N              S     A  
Sbjct: 74  DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 133

Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
             G++      +    D L       I L+     + ++  ++   K + +LT RE ECL
Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            W  EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 194 AWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|37223223|gb|AAQ90210.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++            +  +T+ V   ++LL         K D  +  ++P    +   
Sbjct: 14  IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140
            +   KY  ++        P+   + EN        N              S     A  
Sbjct: 74  DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANN 133

Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
             G++      +    D L       I L+     + ++  ++   K + +LT RE ECL
Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            W  EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 194 AWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|329940179|ref|ZP_08289461.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301005|gb|EGG44901.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 219

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 46/81 (56%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA           H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I 
Sbjct: 138 AARMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIA 197

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK  T  R+G +A A+R  I+
Sbjct: 198 RKLGTGDRAGMVAVALRTGII 218


>gi|328881870|emb|CCA55109.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 229

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 8/177 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +A +        L     +    F      +       + +     
Sbjct: 50  DVVLMDIRMPGTDGLAATRMITADPELSDVRIVMLTTFEVDEYVVQSLRAGASGFLGKGA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN------MFKSYDVHWGKDFELTGR 189
           +   + +G + +   G  +L       GL+A + A       + ++      +   LT R
Sbjct: 110 EPEEL-LGAIRIAHAGEALLSPA-ATKGLIATFLAQGPGAEAVGEAGRARSERLAALTAR 167

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 168 EREVLVLVAGGLSNDEIAERLDVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 224


>gi|224476942|ref|YP_002634548.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421549|emb|CAL28363.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 205

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 45/96 (46%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              I + +  E    A     M    +        LT RE+E L  I+ G ++ EIA   
Sbjct: 109 AEAIRKTQHNESVFEAEVLVKMRNRMNQRAELYEMLTDREMEILLLIANGYSNQEIASAS 168

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+  TV  ++++I+ K   + R+ A+ YA +++++
Sbjct: 169 HITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLI 204


>gi|146295566|ref|YP_001179337.1| two component LuxR family transcriptional regulator
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409142|gb|ABP66146.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 211

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 8/114 (7%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFE 185
            + Y   + D   I   ++ +     ++ ++       +A Y +++ K      + K   
Sbjct: 99  ADGYILKSSDAKHIVNSILSVLDGKVVMDKE-------IALYVSDVLKRTSKQLFEKTQN 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE+E    IS+G ++ EIA +L IS  TV NYI SI++K   K R+    Y
Sbjct: 152 LSERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|254720638|ref|ZP_05182449.1| regulatory protein LuxR [Brucella sp. 83/13]
 gi|265985682|ref|ZP_06098417.1| regulatory protein LuxR [Brucella sp. 83/13]
 gi|264664274|gb|EEZ34535.1| regulatory protein LuxR [Brucella sp. 83/13]
          Length = 259

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132
           D  V    P   V   +         V     +   P +      I      D   C   
Sbjct: 58  DLTVLMTLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 113

Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168
             L  D  +  +G + +    R                       + R R   + L    
Sbjct: 114 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 173

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
              +    D +      LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K 
Sbjct: 174 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 232

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+A A+   I+
Sbjct: 233 NCSNRTSAVATALSLGII 250


>gi|254699430|ref|ZP_05161258.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
 gi|261749881|ref|ZP_05993590.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
 gi|261739634|gb|EEY27560.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
          Length = 259

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132
           D  V    P   V   +         V     +   P +      I      D   C   
Sbjct: 58  DLTVLMTLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 113

Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168
             L  D  +  +G + +    R                       + R R   + L    
Sbjct: 114 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 173

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
              +    D +      LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K 
Sbjct: 174 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 232

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+A A+   I+
Sbjct: 233 NCSNRTSAVATALSLGII 250


>gi|251771224|gb|EES51805.1| two component transcriptional regulator, LuxR family
           [Leptospirillum ferrodiazotrophum]
          Length = 219

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +L   +F             D+   SL   +  + +G + + P+                
Sbjct: 95  QLEGEIFGAFSSGADGYCLKDSELDSLILGIQAVALGSLYVDPRI--------------- 139

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A+ A            +  L+ RE E L  ++EG+++ +IAV LGIS +TV  +I SI+ 
Sbjct: 140 AHLAIRRILSSPAPETETPLSARETEVLRLLAEGQSNRDIAVALGISVSTVKAHIQSILV 199

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K +  TR+ A   A R   +
Sbjct: 200 KLSAATRADAAVKAFRKGWI 219


>gi|148558318|ref|YP_001257186.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148369603|gb|ABQ62475.1| transcriptional regulator, LuxR family [Brucella ovis ATCC 25840]
          Length = 268

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132
           D  V    P   V   +         V     +   P +      I      D   C   
Sbjct: 67  DLTVLITLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 122

Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168
             L  D  +  +G + +    R                       + R R   + L    
Sbjct: 123 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 182

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
              +    D +      LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K 
Sbjct: 183 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 241

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+A A+   I+
Sbjct: 242 NCSNRTSAVATALSLGII 259


>gi|115526593|ref|YP_783504.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115520540|gb|ABJ08524.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 309

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              K+  LT RE E L+W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R+
Sbjct: 240 DLSKELGLTTRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRT 295


>gi|254411603|ref|ZP_05025379.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181325|gb|EDX76313.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 225

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 8/161 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L R   ++   +    L     +      T  E I   +   + YC     V R+   + 
Sbjct: 73  LPRLDGIAATQQIKAELPEVRVVILTSHTTDREIIASLSSGADAYCVKGSSVERLLQAIA 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                   +          +         S     G    L+ RE+E L  I EG ++ E
Sbjct: 133 AAAEGATYLDP-------QIGRQVLKHL-SPPSPTGNVSNLSQRELEVLKLIVEGNSNPE 184

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S NTV  ++  IM K +   R  A   A+R+ IV
Sbjct: 185 IAAKLYLSANTVKTHVRGIMNKLSVDDRVQAAVVALRSGIV 225


>gi|58583150|ref|YP_202166.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58427744|gb|AAW76781.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 214

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +          P  +    F      +         Y     
Sbjct: 50  DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + ++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 108 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 163

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 164 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 214


>gi|78183869|ref|YP_376303.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168163|gb|ABB25260.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 92

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 43/72 (59%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D     D  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R 
Sbjct: 3   SVDTTDPLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRV 62

Query: 235 GAIAYAVRNNIV 246
             + +A+ N  +
Sbjct: 63  ALLNWAMDNGKI 74


>gi|297571014|ref|YP_003696788.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931361|gb|ADH92169.1| two component transcriptional regulator, LuxR family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 230

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 2/141 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F      +       + +       A++   +  ++    +I         L
Sbjct: 84  PKILILTTFDEDDYMLEGIRAGASGFLLKDAPTAKMLEAIRTIYQGDAVIAPSTTRR--L 141

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +     +  + +        +LT RE E    I+ G T+ EIA  L ++  TV  ++  I
Sbjct: 142 VDRLATDSIRLHASKPEVLDDLTDREREVFYLIARGLTNTEIADRLYVAEATVKTHVTRI 201

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
             K   + R  A+  A    I
Sbjct: 202 FAKLGVRDRVQAVVIAYEAGI 222


>gi|229102861|ref|ZP_04233555.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228680534|gb|EEL34717.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 211

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV+  
Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209


>gi|212716971|ref|ZP_03325099.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660256|gb|EEB20831.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM
           16992]
          Length = 248

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ E   +AA    
Sbjct: 107 VMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGA 166

Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
              S                ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 167 HGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 227 LAKINARDRVQAVVFAYENHLV 248


>gi|149922133|ref|ZP_01910573.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
 gi|149817070|gb|EDM76552.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
          Length = 247

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++  I   LGIS +TV  ++ +++ K   ++R+ A+  A+R  +
Sbjct: 184 LTPREREVLELLADGLSNRNIGERLGISAHTVKFHVDALLDKLDARSRTQAVVQAIRRGL 243

Query: 246 V 246
           +
Sbjct: 244 L 244


>gi|110634798|ref|YP_675006.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285782|gb|ABG63841.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 554

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ GK +  IA  L +S  T++ ++++I  K    +R+ A A+A R  +
Sbjct: 494 LTRRELEVLRLVTAGKPNKVIAAELFLSEKTIDRHLSNIFDKLGVSSRTAAAAWAFRQGL 553

Query: 246 V 246
           V
Sbjct: 554 V 554


>gi|296137313|ref|YP_003644555.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
 gi|294341618|emb|CAZ90035.1| putative two-component system response regulator; CheY domain
           [Thiomonas sp. 3As]
 gi|295797435|gb|ADG32225.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
          Length = 223

 Score = 96.6 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L          D     L   + RI+ G   L P        R         ++   
Sbjct: 94  FPALQAGAFGYLLKDRPKIELRAQLRRIQDGEPPLSPSI-----ARRMVQHFTHLHRTMS 148

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S ++   +   LT RE E L  + +G T  EIAV LG+SR+TV +Y+  I RK    +
Sbjct: 149 APSSNLPQEEHIALTERESEVLQLVGKGYTLPEIAVQLGLSRHTVADYVKQIYRKLNISS 208

Query: 233 RSGAIAYAVRNNIV 246
           R+ A   AVR  +V
Sbjct: 209 RAEAALEAVRRGLV 222


>gi|239940914|ref|ZP_04692851.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987390|ref|ZP_04708054.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 229

 Score = 96.6 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 10/176 (5%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRY 130
             P  ++  + + E D      +          RP  L    F              + +
Sbjct: 47  HHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHRPKVLMLTTFDVDDYVYEALRAGASGF 106

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  A +   + ++     ++       +    A Q     +      +   LT RE
Sbjct: 107 LLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPAGATRTGQALRLNGLTPRE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I+ G ++ EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 167 SEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 222


>gi|206558215|sp|A5VTN1|VJBR_BRUO2 RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
          Length = 259

 Score = 96.6 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-- 132
           D  V    P   V   +         V     +   P +      I      D   C   
Sbjct: 58  DLTVLITLPATWVARYSSKNYFAIDPVF----QEDAPYYRNDTSAIARDLKEDADICPAV 113

Query: 133 --LTFDVARIRIGLMLLFPKGR----------------------IILRDRLWEIGLLAAY 168
             L  D  +  +G + +    R                       + R R   + L    
Sbjct: 114 AELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGII 173

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
              +    D +      LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K 
Sbjct: 174 HGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKL 232

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+A A+   I+
Sbjct: 233 NCSNRTSAVATALSLGII 250


>gi|153011539|ref|YP_001372753.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
 gi|151563427|gb|ABS16924.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
          Length = 260

 Score = 96.6 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 9/144 (6%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-------GRIILRDRLWEI 162
           CP    L ++     G+ N + +++    +  +G  L   +        + + + R   +
Sbjct: 110 CPSIAELLQDAEK-HGLGNIFVAVSARSQKGAVGCTLFMFEMSPDEDREQFVAKLRPRLL 168

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L     + +    DV       LT REV+CL W + GKT  EIA IL I+R TV  Y+ 
Sbjct: 169 SLSGIIHSALCGCKDVATVASL-LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQ 227

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +   K     R+ A+A A+   I+
Sbjct: 228 NAKIKLNCSNRTSAVATALSLGII 251


>gi|299529754|ref|ZP_07043189.1| transcriptional regulator, luxR family protein [Comamonas
           testosteroni S44]
 gi|298722272|gb|EFI63194.1| transcriptional regulator, luxR family protein [Comamonas
           testosteroni S44]
          Length = 239

 Score = 96.6 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 76/223 (34%), Gaps = 13/223 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMALS 93
           +       +    + A+   +G   F+L      ++  ++ I  +  DW F     +   
Sbjct: 16  IEGARSLAAIQDTVRAVGAPLGYDRFVLFSASSARDDAVERIYWIEGDW-FGTGAPVDAE 74

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIRIGLM 145
              ++  V +   E   P F T               P G       +         G M
Sbjct: 75  TYVRHCPVTRHILETNQPFFWTKTNGAQGERYSVVRAPQGPGIHGLQVPVFGLLGLEGAM 134

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTS 203
            L  +           + L+A       +       ++    L+ RE E L W + G+  
Sbjct: 135 SLGGERIDASPQARLALELIAQTAFRTARRLLELPAQEELGPLSDREREVLAWTAAGRRQ 194

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LG+S  TV N++  I ++    T + AI  A+RN  +
Sbjct: 195 TEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRMAIRNGEI 237


>gi|302533992|ref|ZP_07286334.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442887|gb|EFL14703.1| two-component system response regulator [Streptomyces sp. C]
          Length = 233

 Score = 96.6 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++   L E   LA  
Sbjct: 101 HADVLEAVKSGATGYLLKSAGAQELIDAVRRTAAGDPVFTPGLAGLV---LGEYRRLATD 157

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 158 PAPAAP----DVPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 213

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 214 QLHNRVELVRYAIERGL 230


>gi|25029338|ref|NP_739392.1| putative two-component response regulator [Corynebacterium
           efficiens YS-314]
 gi|23494626|dbj|BAC19592.1| putative two-component response regulator [Corynebacterium
           efficiens YS-314]
          Length = 225

 Score = 96.6 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ EI  IL +S  TV +++  I  K   ++R+ A+A A    +
Sbjct: 165 LTPRELEVLKLVAGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGL 224

Query: 246 V 246
           +
Sbjct: 225 L 225


>gi|271501434|ref|YP_003334459.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344989|gb|ACZ77754.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586]
          Length = 250

 Score = 96.6 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 6/146 (4%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           R  E    V H + +N  P             +   + +  ++   +    + + L ++ 
Sbjct: 106 RLDEHAQEVTHYMRDNNMP---CGATVPLHLPNGGFVTLTGIVTDQREERDISETLAQLT 162

Query: 164 LLAA-YQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
            LA  +Q + F  +D      +  +L+ RE ECL W +EG T+ EIA  L  S  TV  +
Sbjct: 163 FLAHRFQESAFPLFDASMLTCRHVKLSNRERECLAWSAEGLTAKEIARKLHRSVATVTLH 222

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           + +  +K     R  A+  A+   ++
Sbjct: 223 LNTAAKKLGATNRVQAVVRALHYRLL 248


>gi|314934049|ref|ZP_07841412.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
 gi|313653160|gb|EFS16919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
          Length = 209

 Score = 96.6 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 4/90 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + ++E  +L   +  M K  +++      LT RE+E L  I++G ++ EIA    I+  T
Sbjct: 123 ESVFEPEVLVKMRNRMKKRAELYE----MLTEREMEILLLIAKGYSNQEIASASHITIKT 178

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 179 VKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|302535348|ref|ZP_07287690.1| two-component system regulator [Streptomyces sp. C]
 gi|302444243|gb|EFL16059.1| two-component system regulator [Streptomyces sp. C]
          Length = 223

 Score = 96.6 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P     L   + E   L A +A 
Sbjct: 94  VYEALRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRL---ITEFSRLGAPRAP 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                +       ELT RE E L+ I++G ++ EIA  L ++  TV  ++  I+ K   +
Sbjct: 151 SRARIE-------ELTERETEVLSLIAQGLSNGEIATHLVVAEQTVKTHVGRILVKLGLR 203

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A    +V
Sbjct: 204 DRTQAAVFAYETGLV 218


>gi|330961312|gb|EGH61572.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 240

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 3/108 (2%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                +  L    + I  ++ + +  L     ++ +           LT RE+E L W  
Sbjct: 135 ESVTSVCTLAEVEKPINAEQKYLVSSLMPVMHSVARGLKFCSR---GLTHRELETLQWAR 191

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GK + EI+VI  IS  TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 192 DGKNAWEISVIRDISEATVKYHLKAIYAKLGVANRAQAVGEALCRGLI 239


>gi|297624725|ref|YP_003706159.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297165905|gb|ADI15616.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 210

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 10/217 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +D        + +L E    S  + V  +    +    +++   P  ++  + +
Sbjct: 1   MIRVLLVDDQTLVRQGIRSLLE---LSPEMQVVGEAADGEAALGLIAETAPDVVLLDLRM 57

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFP 149
            + D    +          +  T  ++     G+      Y      + ++   +  L  
Sbjct: 58  PKLDGLGVLRALAHPPPTLILTTFDDDALVLDGLRAGAKGYLLKDVSLEQLVTAVRTLAA 117

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G ++       +        +              LTGRE E +  ++ G ++ EIA+ 
Sbjct: 118 GGTLVQPAVTERV----LRGLSGVPRDYPSLETPDPLTGREREVVRLMAGGYSNREIALA 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS+ TV N+++S++ K   + R+ A+  A+    V
Sbjct: 174 LHISQGTVKNHVSSVLSKLGVRDRTRAVLKALELGYV 210


>gi|329938110|ref|ZP_08287561.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329302599|gb|EGG46489.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 223

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 55/179 (30%), Gaps = 8/179 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV--------FHTLPENITPPAGMD 127
            + +   P  ++  + +   D          +   PV        F              
Sbjct: 41  RVAAETSPDVVLMDIRMPGTDGVRATELILAQATDPVPRVLVLTTFDLDEYVYGALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +        R+   +  +     +        +    A +A           +   LT
Sbjct: 101 SGFLLKDSGPERLLAAVTAVRGGDALFAPSVTRRLVEAYAGRAGHRPRDAEPPPELGALT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  I  G ++ EIA  L IS  TV  ++   M K    +R+ A+  A    +V
Sbjct: 161 TREVEVLGLIGRGLSNLEIADRLYISEATVKTHLNRTMTKLDLDSRAQAVVVAYETGLV 219


>gi|296168969|ref|ZP_06850636.1| LuxR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896355|gb|EFG76010.1| LuxR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 530

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
            R RL    + A  +A           +   LT RE E L  ++ G+++ EIA  L IS 
Sbjct: 435 ARGRLDGDAVEAVLEA-AGHRPSRRAVRPEGLTRREAEVLLHVARGQSNREIASALWISE 493

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            TV N++  I  K     R GA  YA R+ +
Sbjct: 494 KTVRNHVERIYAKIGVSNRIGASLYATRHGL 524


>gi|226312583|ref|YP_002772477.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095531|dbj|BAH43973.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 215

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 38/79 (48%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA      F        +  +LT RE E L  +++G ++ +I+  L IS +TV N++ +I
Sbjct: 131 LAFRILKEFAPIGSDVAQPSKLTSREREILGLVAKGLSNRDISSKLVISEHTVKNHLKNI 190

Query: 225 MRKTATKTRSGAIAYAVRN 243
           ++K   + R     YA   
Sbjct: 191 LQKLHLENRVQLARYAFEQ 209


>gi|254448276|ref|ZP_05061738.1| Two Component Transcriptional Regulator, LuxR family [gamma
           proteobacterium HTCC5015]
 gi|198262143|gb|EDY86426.1| Two Component Transcriptional Regulator, LuxR family [gamma
           proteobacterium HTCC5015]
          Length = 208

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV    L   D     ++    L   V H +PE              +   +     G +
Sbjct: 42  LVEPFDLLVMDLRMPGMKGMRSL-TGVVHRVPETPVVVISATESQADVNACMEAGVRGFI 100

Query: 146 -------LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                   +    R +L   L+   L A  Q   ++S DV      EL+GR+++ L  ++
Sbjct: 101 PKSTPAPEMLAILRRVLAGELYHPALEATAQHPSWESDDVDRAAFSELSGRQMQVLAEMA 160

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G T+ EIA +L IS +TV  +IA +       +R      A    ++
Sbjct: 161 KGSTNKEIAAVLNISEHTVKTHIAKLFSVLKVNSRVECAQQARLMGVI 208


>gi|157691669|ref|YP_001486131.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|194014892|ref|ZP_03053509.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
 gi|157680427|gb|ABV61571.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|194013918|gb|EDW23483.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
          Length = 216

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             ++ +  +  W    ELT RE + L  I++GK++ EIA  L IS  TV  +++ ++ K 
Sbjct: 133 VQHLTEPKEQKWELMKELTNRERDVLFEIAKGKSNKEIASSLFISEKTVKTHVSHVLSKL 192

Query: 229 ATKTRSGAIAYAV 241
               R+ A  YAV
Sbjct: 193 ELADRTQAALYAV 205


>gi|254822986|ref|ZP_05227987.1| hypothetical protein MintA_23864 [Mycobacterium intracellulare ATCC
           13950]
          Length = 518

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            L  + + A   A    +   +   D  LT REVE L  ++ G ++ EIA  L IS  T 
Sbjct: 426 ELDAVAVEAVLHAAGQPAQRPNLRPD-RLTPREVEVLCLVARGASNKEIAASLVISEKTA 484

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            N++     K     R GA  YA+R+ +V
Sbjct: 485 RNHVERTYAKIGVSNRIGASMYALRHGLV 513


>gi|91788405|ref|YP_549357.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91697630|gb|ABE44459.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 230

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 41/83 (49%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL   +      +     K  +L+ RE E L  ++ G TS EI   L IS  TVN +I +
Sbjct: 148 LLHRLEHTQEAPHPHTAEKRDKLSDREKEVLKAVAAGYTSGEIGSRLMISCQTVNTHIKN 207

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I RK   ++R+ A+ +A    ++
Sbjct: 208 IYRKLQVRSRAQAVNFAAHRGLL 230


>gi|288936970|ref|YP_003441029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Klebsiella variicola At-22]
 gi|288891679|gb|ADC59997.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Klebsiella variicola At-22]
          Length = 921

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--FCPVFHTLPE 118
           +++   +   ++   + + + W   L      +     +  + +  E      +F    +
Sbjct: 752 YMVADQENRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLAEQQHLTGLFLDAGD 811

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            + P     N   S      +   G+   +   R       +  G           S D+
Sbjct: 812 TLQPLLAGMNESSS----AGKEEGGVHEPWADKRAPADGTPFNSG-----------SPDI 856

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     EL+ RE++ L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+ A++
Sbjct: 857 HG----ELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMS 912

Query: 239 YAVRNNIV 246
            A+   ++
Sbjct: 913 RALEMKLL 920


>gi|91783993|ref|YP_559199.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91687947|gb|ABE31147.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 213

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 64/171 (37%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +     P  +V  + +   D    +    +         L  +                
Sbjct: 42  ELAREHQPDLIVLDLLMPGMDAAATIRSLRSLSPNSRIAVLTSSDDDNLAFSAIEAGAHS 101

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + +   G  LL    R+   + +    +      ++  + +        LT RE++ L 
Sbjct: 102 FLLKSMSGDALLDTLRRLAEGEAVIHPDVAHRILRSVRTARERVTDPFASLTEREMDVLR 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG ++  I  +L IS +TV  +I +++ K   + R+ A+A+A R+ ++
Sbjct: 162 ALAEGSSNGRIGKMLNISESTVKTHIGNVLAKLDLRDRTQAVAFAWRHGLI 212


>gi|264678731|ref|YP_003278638.1| transcriptional regulator, luxR family [Comamonas testosteroni
           CNB-2]
 gi|262209244|gb|ACY33342.1| transcriptional regulator, luxR family [Comamonas testosteroni
           CNB-2]
          Length = 239

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 76/223 (34%), Gaps = 13/223 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMALS 93
           +       +    + A+   +G   F+L      ++  ++ I  +  DW F     +   
Sbjct: 16  IEGARSLAAIQDTVRAVGAPLGYDRFVLFSASSARDDAVERIYWIEGDW-FGTGAPVDAE 74

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIRIGLM 145
              ++  V +   E   P F T               P G       +         G M
Sbjct: 75  TYVRHCPVTRHILETNQPFFWTKTNGAQGERYSVVRAPQGPGIHGLQVPVFGLLGLEGAM 134

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTS 203
            L  +           + L+A       +       ++    L+ RE E L W + G+  
Sbjct: 135 SLGGERIDASPQARLALELIAQIAFRTARRLLELPAQEELGPLSDREREVLAWTAAGRRQ 194

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LG+S  TV N++  I ++    T + AI  A+RN  +
Sbjct: 195 TEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRVAIRNGEI 237


>gi|225628596|ref|ZP_03786630.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225616442|gb|EEH13490.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo]
          Length = 268

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           + + R R   + L       +    D +      LT REV+CL W + GKT  EIA IL 
Sbjct: 166 QFLARMRPRLLSLAGIIHGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILS 224

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 225 IARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 259


>gi|158315976|ref|YP_001508484.1| LuxR family GAF modulated transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111381|gb|ABW13578.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 285

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 2/159 (1%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +  +  +   +V +R          T   +  P  G       L            L 
Sbjct: 128 NPVPPAAVETALSVARRFEAFLAERTMTARADAGPTPGGPAGASRLRVLCRVDAELEELS 187

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +  G   LR+R+  +  L   +     +      + F L+ RE++ L  ++EG ++ E A
Sbjct: 188 YQAGDPALRERIVAVRDL--LEDLFPDTAPPTRAQPFGLSPRELDVLRLVAEGMSNAETA 245

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV  Y+ SIM K     R+ A+  A R++++
Sbjct: 246 RRLAVSPETVKAYLRSIMNKLGVHNRTAAVNVARRSSLL 284


>gi|260584047|ref|ZP_05851795.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC
           700633]
 gi|260158673|gb|EEW93741.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC
           700633]
          Length = 211

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I++GK++ EIA    I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 150 TSREKEVLLLIAQGKSNQEIADECFITLKTVKTHVSNILSKLQVEDRTQATIYAFKHHLV 209


>gi|260462698|ref|ZP_05810904.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319782267|ref|YP_004141743.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259031604|gb|EEW32874.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317168155|gb|ADV11693.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 240

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 70/232 (30%), Gaps = 17/232 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + + R             +      +G  H +L    L  ++    +  + WP    +  
Sbjct: 8   EFVERCRAHTAPGPLLDDVLLTVRNLGFEHLILSGVPLGGQKLAPMVELNGWPEGWFKRY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDV 137
             +E      V     +   P                          G+ + +      V
Sbjct: 68  VEAEHAAVDGVCIYSAKTLKPFLWADVPAKWSDTKGSRRVAGEATEFGISSGFAVPMLSV 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECL 194
              +  L          L  R  E+ L+            +  G + E   LT RE E L
Sbjct: 128 HHWQSVLSFASSAKVCALSPR-EEVQLVTMAVYAGMAIQALSHGDEVEEGLLTEREKEVL 186

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKTS E + ILG++  TV  +           T + AI  AVR  ++
Sbjct: 187 LWAAAGKTSSETSQILGLAERTVKWHATRAREAFGVATTTQAIVEAVRRRMI 238


>gi|254706324|ref|ZP_05168152.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|254711385|ref|ZP_05173196.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|256029985|ref|ZP_05443599.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
 gi|256158149|ref|ZP_05456065.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|256252900|ref|ZP_05458436.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261219988|ref|ZP_05934269.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261313770|ref|ZP_05952967.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|261318991|ref|ZP_05958188.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|265987006|ref|ZP_06099563.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
 gi|265996667|ref|ZP_06109224.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|260918572|gb|EEX85225.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261298214|gb|EEY01711.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|261302796|gb|EEY06293.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|262550964|gb|EEZ07125.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|264659203|gb|EEZ29464.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
          Length = 259

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           + + R R   + L       +    D +      LT REV+CL W + GKT  EIA IL 
Sbjct: 157 QFLARMRPRLLSLAGIIHGTVCGCKDANSVASL-LTPREVDCLRWAANGKTDGEIAEILS 215

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 216 IARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|170719977|ref|YP_001747665.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757980|gb|ACA71296.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 236

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 12/179 (6%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP--------AGMDNRYC 131
           S++P   +      E  K             PV  T       P         G+ + + 
Sbjct: 56  SNYPLAWIERYQRDEFYKQDPAAALSHTSTEPVLWTDELYSEAPDFREQACKHGLRHGWT 115

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDFELT 187
               D+      + +  P G+I + +   + G    L       + + +        +++
Sbjct: 116 QSLHDLRHNETQVSVARPFGKIDIHELYDKAGQVQWLCHTLHDTICEHHLAKLSSPLKMS 175

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT    ++GA+A A+   ++
Sbjct: 176 DRELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNASNKAGAVAIAMMRGLI 234


>gi|311742180|ref|ZP_07715990.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM
           15272]
 gi|311314673|gb|EFQ84580.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM
           15272]
          Length = 899

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +       + +   ++     R        F   R +    L  + + AA  A +    D
Sbjct: 772 DGWPHMVAICSARLAMRTSAPRAHDLAAAAFAIARRLSSPPLESLAVAAAASAGVDLQID 831

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +    D  LT RE E L W+S G ++ +IA  LGIS  TV+ ++++++RK    +R+ A 
Sbjct: 832 LD-DPDPHLTPRESEVLRWVSTGASNRQIARTLGISEGTVSVHVSNLLRKLGVGSRTEAA 890

Query: 238 AYAVR 242
             A R
Sbjct: 891 VRAAR 895


>gi|145300854|ref|YP_001143695.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853626|gb|ABO91947.1| transcriptional regulator, LuxR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 200

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 1/138 (0%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI- 162
            P E+           +  P   D     +    + +      L    R +L+   W   
Sbjct: 59  WPREISSRFGEANTILLNAPTSTDRELLLMWPHTSGLFFRQDRLVLGIRKVLQGEYWIPR 118

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            LL        K  + H      LT RE E + ++  G ++ EIA  L +S +T+ +++ 
Sbjct: 119 HLLCDLVNYYRKGGEHHLRNQTLLTAREQEIIRYLMTGASNTEIADSLFVSEHTIKSHLY 178

Query: 223 SIMRKTATKTRSGAIAYA 240
           ++ +K   + R  A+++A
Sbjct: 179 NVFKKLNVRNRLQAVSWA 196


>gi|29832624|ref|NP_827258.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609744|dbj|BAC73793.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 215

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           LT  V R  +G  +  P    ++   L E   LA+ 
Sbjct: 82  HADVLEAVKSGATGYLLKSASTEELTDAVRRTAVGDPVFTPGLAGLV---LGEYRRLASE 138

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    +      +  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 139 PA---PATGAGEPRAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 196 QLHNRVELVRYAIERGL 212


>gi|38233071|ref|NP_938838.1| response regulator [Corynebacterium diphtheriae NCTC 13129]
 gi|5639947|gb|AAD45905.1|AF161328_2 response regulator CstA [Corynebacterium diphtheriae]
 gi|38199330|emb|CAE48963.1| Response regulator [Corynebacterium diphtheriae]
          Length = 233

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 2/135 (1%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D     L   V  +     ++ P    +L   +          A 
Sbjct: 90  VVGAVEHGASGFLLKDTAPEDLIAAVRTVGEQSAVISPAATAVLFKSMRGHAPQTDLVA- 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                D++ G    LT RE E L  I+ GK++ EIA  L IS  TV  +++ ++ KT ++
Sbjct: 149 -TPGGDINAGLIDPLTPREQEILLLIALGKSNTEIAEELFISLPTVKTHVSKVLSKTGSR 207

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+ +A    +V
Sbjct: 208 DRVHAVLFAFSRGLV 222


>gi|254442705|ref|ZP_05056181.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198257013|gb|EDY81321.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 200

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +++G+++ EIA  L +   TV  ++ +I+ K     R+ AI  AV+  
Sbjct: 136 QLTKRELEVLAQVAKGRSNKEIANELNLVEGTVKVHLTNILSKLGVSDRTQAILAAVKRG 195

Query: 245 IV 246
           ++
Sbjct: 196 LI 197


>gi|302557180|ref|ZP_07309522.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces griseoflavus Tu4000]
 gi|302474798|gb|EFL37891.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces griseoflavus Tu4000]
          Length = 382

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D R   L   V  +  G  LL P     L      +  +   +  
Sbjct: 249 VYEALYAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPAVTRRL------VADIVRRRRE 302

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +      +   LT REVE L  ++ G ++ EIA  L +S +TV  ++++++ K A +
Sbjct: 303 RAAADTATPQRLDTLTAREVETLRLLARGLSNAEIATTLFVSEHTVKTHVSNVLGKLALR 362

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    ++
Sbjct: 363 DRVQAVICAYETGLI 377


>gi|297160220|gb|ADI09932.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 213

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +++G ++ EIA  L IS  TV  ++  + RK   K R+ A+A A    I
Sbjct: 152 LSAREREVLELVAKGTSNREIARELFISEATVKTHLTHLYRKLGVKDRAAAVAVAYDRGI 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|260219834|emb|CBA26763.1| hypothetical protein Csp_G38260 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 359

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F+LT RE E L W+ +GKT+ +I  ILG S  TV  ++  +  K   +TR+ A   A+  
Sbjct: 290 FKLTAREAEVLYWVVKGKTNKDIGDILGSSPMTVKKHLERVFVKLGVETRTAAAGMAMSR 349


>gi|196232039|ref|ZP_03130894.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223761|gb|EDY18276.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 220

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 12/222 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           DLL  ++  +      + + ++ E +G   + +V       + ++  + S  P  ++  +
Sbjct: 2   DLLPSILIAEDDERTCILLQSMLESLG---YPIVGTAGDGMEAVEKTL-SLKPGAVLLDI 57

Query: 91  ALSEKDKYYNVLQRPTELFCP--VFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLM 145
            +   D      +   ++  P  V   + ++ T  A        +              +
Sbjct: 58  GMPVLDGLEAARRILDQMLVPIVVLTGMSDDATLEAARALGVQAFLLKPLASKEQLRAAI 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++        R     I  L+    +            + LT RE E L  ++EGK + E
Sbjct: 118 VIATTICDRQRADAERIDTLSTSLESTRVKTMPRALGSYGLTRRETEVLHLLAEGKANAE 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGA---IAYAVRNN 244
           I V LG+S  TV  ++  I+ K   K+R+ A   +A A R  
Sbjct: 178 IGVELGLSPRTVEKHVEHILDKLGVKSRTAATRLVADAGRRK 219


>gi|75812491|ref|YP_320110.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705247|gb|ABA24921.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 223

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   YC       ++ + L  +             EI    +Y+    +  +    
Sbjct: 97  LIEAGAQGYCLKGIAAEKLVLALRSVASGASWWDATATQEIRSSLSYETPQLEPENRAKL 156

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  LTGRE E L+ ++ GKT+ EIA  L I+  TV  +I +I++K     R+ A+  A+
Sbjct: 157 SN-PLTGREQEILSLLAAGKTNQEIAHQLCIAPGTVRVHIHAILQKLEVSDRTQAVLVAL 215

Query: 242 RNNIV 246
           +  ++
Sbjct: 216 QKQLI 220


>gi|309790624|ref|ZP_07685178.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308227352|gb|EFO81026.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 226

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D  + +L   +  +  G  LL P+   I    L  +G LA   A 
Sbjct: 94  VFRGIAAGARGYLLKDVDHRALADAIRTVAAGGALLNPE---ITAQILPYLGRLAEQTAP 150

Query: 172 M-FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
               +   H  +   LT RE   L  +++G ++ EI+  L IS  TV N+I+SI+ K   
Sbjct: 151 APVTTAPPHSERAELLTERERSILQMLAKGCSNQEISAALMISVGTVKNHISSILGKLDV 210

Query: 231 KTRSGAIAYAVRN 243
           + R+ A  +A++N
Sbjct: 211 RDRTQAALWAIQN 223


>gi|271962124|ref|YP_003336320.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505299|gb|ACZ83577.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 13/134 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          +     +   V  +  G  +  P+   I R  L        Y A 
Sbjct: 89  VFTAMRAGARGYLLKEAGAEEIGRAVHAVAAGEAIYGPE---IARRVL-------TYFAG 138

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M    D       ELT RE E L  +++G+ ++EIA IL +S  TV N++++I  K    
Sbjct: 139 M---PDPSRTAFPELTEREREVLELVAQGRGNNEIAGILFLSGKTVRNHVSNIFMKLQVA 195

Query: 232 TRSGAIAYAVRNNI 245
            R+ AI  A    +
Sbjct: 196 DRAQAIVRAREAGL 209


>gi|324997346|ref|ZP_08118458.1| two component transcriptional regulator, LuxR family protein
           [Pseudonocardia sp. P1]
          Length = 222

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 87/221 (39%), Gaps = 13/221 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R+  +D        + +L   +G +  + V  +     +  ++V    P  ++  + 
Sbjct: 1   MTVRVCLVDDQTLVRHGIRSL---LGLADDVEVVAEAGDGAEGVAMVVEHRPDVVLLDLR 57

Query: 92  LSEKDKYYNVLQ-RPTELFCPV-----FHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   D  + + + R   L  PV     F      +         Y      + ++   + 
Sbjct: 58  MPRHDGMWALGELRARGLDVPVLVLTTFDDDELVLQALRAGARGYLLKDVTLEQLVGAVR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            L   G +I         LL A         D       EL+GRE+E L  ++ G  + E
Sbjct: 118 TLAAGGTLISPAITER--LLRAVHGVPAPPDD--GAPLQELSGRELEVLRLLAAGYANRE 173

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L ++  TV N++++++ K  T+ R+ A+  A+ + ++
Sbjct: 174 IAQVLVLAEGTVKNHVSNVLLKLGTRDRTRAVLRALHHGLL 214


>gi|159897239|ref|YP_001543486.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890278|gb|ABX03358.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 240

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 7/112 (6%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGREVECL 194
           +G++     GR ++ + +     +A    N F+         +        LT RE+E L
Sbjct: 114 VGMIRDVAHGRYVINESVMSKPHVATRVLNQFRELSNVANNSEDTSSMFAPLTSREIEIL 173

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+ +A++   +
Sbjct: 174 DCIARGLSNKEIANQLSISGQTVKNHITSILSKLQVNDRTMAVIHAIQQGWI 225


>gi|152965963|ref|YP_001361747.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360480|gb|ABS03483.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 14/169 (8%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTFD 136
           VR   L+  D    +++   E    +          F  L    +     D     L   
Sbjct: 55  VRMPNLNGIDATARLVEARPEARVLILTTFDLDEYAFAALRAGASGFLLKDVAPVDLIGA 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V  +  G  ++ P+    +  R+ E+      ++      D    +  +LT RE+E L  
Sbjct: 115 VRTVAGGEAVVSPR----ITRRMLELFAHRLPESGEVPRSDAVHPRLADLTPRELEVLRH 170

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+  +++ EIA  L +S  TV  ++A ++ K   + R  A+  A    +
Sbjct: 171 IAGARSNAEIAAHLFLSEATVKTHVARVLAKLGVRDRVHAVVLAYETGL 219


>gi|324998048|ref|ZP_08119160.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 198

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             R   +  LA   A+    +  V      +LT RE++ L  +S+GK++ +I   L +S 
Sbjct: 106 ASRPELVAALAHTLASTSVPTPRVPTDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 165

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  +   + RK   + R+ A+A+  R  +V
Sbjct: 166 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|312196323|ref|YP_004016384.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227659|gb|ADP80514.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 221

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D R   L   V  +  G  LL P               L A    
Sbjct: 92  VYAALRAGASGFLLKDVRRDELVRAVRLVAAGESLLAPSV----------TRRLIADVVG 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +      +  ELT RE E L  +  G ++ EIA  L +S +TV ++++S++ K   +
Sbjct: 142 RGAARPALARRLDELTERESETLRLLGRGLSNSEIAATLVVSEHTVKSHVSSVLTKLGLR 201

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+ +A  + ++
Sbjct: 202 DRAQAVVFAYESGLI 216


>gi|307151762|ref|YP_003887146.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306981990|gb|ADN13871.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 210

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 12/170 (7%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHT---LPENITPPAGMDNRYCSLTFD 136
           P  +V  + L   D       + +    +   +  +     E +   +   + YC     
Sbjct: 47  PDLIVMDIGLPRLDGIAATKQIKEELPHVHVVMLTSHTQQTEVVAALSSGADAYCVKGAS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           + R+ +  +     G   L  ++  + L      N+         K   L+ RE+E L  
Sbjct: 107 LDRL-MAAIDAAKDGATYLDPQIARLVL-----GNLKAPAPQQNLKISNLSERELEVLKL 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ +V
Sbjct: 161 IVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210


>gi|22299989|ref|NP_683236.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296174|dbj|BAC09998.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 214

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 71/179 (39%), Gaps = 20/179 (11%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHT-----LPENITPPAGMD 127
            ++    P  L+  +A+   + Y     + Q P+    PV +      L E I       
Sbjct: 40  EMIHHYQPHLLITDIAMPNMNGYELVRQIRQHPSLRLLPVIYLTARTELEERIRAYRTGG 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +  FD+  +   +        ++ R +L ++       A   +          +LT
Sbjct: 100 DVYLAKPFDLNELAAVV------RNLLDRAQLVQMEWQQRQHAPKGQRV------RVDLT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +  G ++ +I   L +S  T+  +++S+ +KTA   R+  +  A+   +V
Sbjct: 148 QREKDVLALLVAGLSNAQIGDRLHLSARTIEKHVSSLFQKTAVHNRAELVRLAIEQGLV 206


>gi|126657363|ref|ZP_01728522.1| NarL subfamily protein [Cyanothece sp. CCY0110]
 gi|126621350|gb|EAZ92062.1| NarL subfamily protein [Cyanothece sp. CCY0110]
          Length = 210

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 18/173 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLT 134
           P  +V  + L   D      Q   +   P  H           E +   +   + YC   
Sbjct: 47  PDLVVMDIGLPRLDGIAATKQIKEQ--QPNIHVVMLTSHTLQTEVVAALSSGADAYCIKG 104

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVEC 193
             + R       L            +    +A    +  K       ++  L + RE+E 
Sbjct: 105 ASLER-------LLAAIEAAQDGATYLDPQIARLVLDNLKPPTPEPNQNIALLSERELEV 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ +V
Sbjct: 158 LKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210


>gi|156744143|ref|YP_001434272.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156235471|gb|ABU60254.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 213

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELT 187
            ++   +    +G +L   +   + R           L+   A              +LT
Sbjct: 89  EAVMKAMRAGAMGYLLKDTQAEELRRAIKAAAAGQVQLSPRAAARLMRDVRAPESPEKLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G+ + EIA  L I   TV  ++++I+RK    +R+ A  YAVR  +V
Sbjct: 149 ERETDVLRLLALGRANKEIARELNIGEKTVKTHVSAILRKLDVPSRTQAALYAVRIGLV 207


>gi|77465673|ref|YP_355176.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77390091|gb|ABA81275.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
          Length = 238

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--------ANMF 173
           P +        +     R RIG + +    R    + + E G + A              
Sbjct: 109 PHSFEARAGLIVPLPDRRGRIGAITMLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAA 168

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +         +L+ R++E L WI+ GK++ EIA+ILG+SR  V  +++ I++K    +R
Sbjct: 169 AAVSPALAGLAKLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSR 228

Query: 234 SGAI 237
           + A+
Sbjct: 229 TQAV 232


>gi|300782698|ref|YP_003762989.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792212|gb|ADJ42587.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 198

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             R   +  LA   A+    +         +LT RE++ L  +S+GK++ +I   L +S 
Sbjct: 106 ASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 165

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  +   + RK   + R+ A+A+  R  +V
Sbjct: 166 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|239933765|ref|ZP_04690718.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 212

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V  RP  L    F              + +       A +   + ++     ++      
Sbjct: 65  VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKNAPPADLIAAVRVVASGDALLAPSVTR 124

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              L+A +             +   LT RE E LT ++ G+++ EIA  L ++  TV  +
Sbjct: 125 R--LIADFAKQRPAVRGKPALRLKGLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTH 182

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ ++ K   + R+ A+ +A  + +V
Sbjct: 183 VSRVLTKLDLRDRAQAVVFAYESGLV 208


>gi|254382632|ref|ZP_04997990.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194341535|gb|EDX22501.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 215

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++   L E   LA  
Sbjct: 83  HADVLEAVKSGATGYLLKSAGAQELIDAVRRTAAGDPVFTPGLAGLV---LGEYRRLATD 139

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 140 PAPAAP----DEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 196 QLHNRVELVRYAIERGL 212


>gi|148255164|ref|YP_001239749.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146407337|gb|ABQ35843.1| putative transcriptional regulatory protein, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 140

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F+LT RE + L  ++EG ++ EIA  LGIS +T   ++ S++ K     R+ A+A+A R 
Sbjct: 76  FQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDAVAHAARR 135

Query: 244 NIV 246
            I+
Sbjct: 136 GII 138


>gi|330942061|gb|EGH44732.1| transcriptional regulator LasR [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 239

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D L  M  L C  SW   + A T  +G    L             + + SD+        
Sbjct: 5   DELLTMSGLGCRRSWFEALKANTCALGCDGLLFALKSDGNADNSQAALLSDYSQAWRAIY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMD---NRYCSLTFDVARIR 141
             ++  +   V+        P+      F T  +             +  SL       +
Sbjct: 65  DANDYSRIDPVVSHCMSSTSPIVWNDSIFKTPLQLEFREESKGHGVVQGVSLPLHGMAGQ 124

Query: 142 IGLMLLFPKGRIILRDR------LWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVEC 193
           +G++ +        + +      L  + L+  Y  + F S   +       +L+ RE+E 
Sbjct: 125 VGVLSVRLDSIPQHQLKYHIARILPGLALIRDYAVDTFLSLADEREPNNIVQLSHRELEV 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKT+ EIA IL  S   +N + A + +K    +R  AI  A++  ++
Sbjct: 185 LKWSAFGKTTWEIARILSCSEANINYHFAKVRKKFNVGSRRMAIVKALQTGLL 237


>gi|126347864|emb|CAJ89584.1| putative two component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 224

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 2/146 (1%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V  RP  L    F              + +       A +   + ++     ++      
Sbjct: 77  VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTR 136

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              L+A +      +      +   LT RE E LT ++ G+++ EIA  L ++  TV  +
Sbjct: 137 R--LIADFAKQRPTTRGRPALRLKGLTERETEVLTLVARGQSNTEIAQTLVLAEQTVKTH 194

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ ++ K   + R+ A+ +A  + +V
Sbjct: 195 VSRVLTKLDLRDRAQAVVFAYESGLV 220


>gi|291295193|ref|YP_003506591.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470152|gb|ADD27571.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 216

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 31/182 (17%)

Query: 69  FQEQKLDSI-----VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            Q   LD +     +  +WP   V  + +  +D Y             VF  +       
Sbjct: 55  IQMPNLDGVQATQEILKEWPQAKVIMLTMYCQDGY-------------VFEAVKAGARGY 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              D     L   + R+  G         ++L   + E  ++  ++A    +   H    
Sbjct: 102 MLKDADAKELLEAIRRVYQG--------EVLLDAEMAE-QIIQDFKAKQETTPKAHA--- 149

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+ REV+ L  +++G T+ EIA  L +S  TV N ++ I +K     R+ A  YA+R 
Sbjct: 150 -ELSEREVQILRLVAQGYTNLEIAAELSLSEKTVRNRLSDIFQKLHLNNRTQAALYALRE 208

Query: 244 NI 245
            +
Sbjct: 209 GL 210


>gi|269925421|ref|YP_003322044.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789081|gb|ACZ41222.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 224

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          D     +   V  +  G  +L P              +L+ + + 
Sbjct: 99  VFALLQAGAAGYILKDAHADEVVNAVKAVANGESVLAPSIAK---------KVLSRFTSP 149

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +           LT RE++ L   ++G+++  IA  L +S  TV  ++++I  K    
Sbjct: 150 STQPEHPSPV----LTDRELDVLRLAAKGESNKAIAQQLHLSPRTVQVHLSNIFNKFGVA 205

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A+ +A++  ++
Sbjct: 206 SRTEAVLHALKLGLI 220


>gi|255600849|ref|XP_002537550.1| conserved hypothetical protein [Ricinus communis]
 gi|223515958|gb|EEF24832.1| conserved hypothetical protein [Ricinus communis]
          Length = 219

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 33/54 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE E L W+  GKT+ EI +IL IS NTV N++  I +K     R+ A+A 
Sbjct: 155 LSDREQEILHWVRSGKTNLEIGMILNISANTVKNHLKRIFQKLDVSCRAQAVAK 208


>gi|297566899|ref|YP_003685871.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296851348|gb|ADH64363.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 217

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 31/182 (17%)

Query: 69  FQEQKLDSI-----VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            Q   LD +     +  +WP   V  + +  +D Y             VF  +       
Sbjct: 55  IQMPGLDGVQATQEILREWPQAKVIMLTMYRQDAY-------------VFEAVKAGARGY 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              D     L   + R+  G             + L +  L      +     +      
Sbjct: 102 MLKDADAKDLLEAIRRVNNG-------------EVLLDAELAEQIIQDFKAKRESVPKPH 148

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+ REV+ L  +++G T+ EIA  L +S  TV N ++ I +K     R+ A  YA+R 
Sbjct: 149 AELSEREVQILKLVAQGYTNLEIAGELSLSEKTVRNRLSEIFQKLHLNNRTQAALYALRE 208

Query: 244 NI 245
            +
Sbjct: 209 GL 210


>gi|27367916|ref|NP_763443.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
 gi|27359489|gb|AAO08433.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
          Length = 210

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 44/82 (53%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L +Y      +       D ELT RE++ L ++  G ++ EIA  L IS +T+ +++
Sbjct: 128 MMQLISYYEEKGGAKKEEPQLDIELTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHL 187

Query: 222 ASIMRKTATKTRSGAIAYAVRN 243
            +I RK   K R+ A A+A RN
Sbjct: 188 YNIFRKIDVKNRTQATAWAKRN 209


>gi|312867898|ref|ZP_07728103.1| putative oxygen regulatory protein NreC [Streptococcus
           parasanguinis F0405]
 gi|311096653|gb|EFQ54892.1| putative oxygen regulatory protein NreC [Streptococcus
           parasanguinis F0405]
          Length = 210

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 42/83 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +    +   +S   H     +LT RE + L  +++G  +  IA  L IS  TV  ++++
Sbjct: 123 AIETEVSQKVESRKNHAELHDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSN 182

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K     R+ A+ YA R+++V
Sbjct: 183 ILSKLEVSDRTQAVVYAFRHHLV 205


>gi|239928815|ref|ZP_04685768.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437136|ref|ZP_06576526.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340031|gb|EFE66987.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 217

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           LF   R     R      +A+      ++     G+   L+ RE E L  ++ G ++ EI
Sbjct: 119 LFTAVRAAADGRTVLSPAVASRLVCAVRAPRTAGGEP--LSAREREVLALVARGTSNREI 176

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 177 ARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYDRGIL 216


>gi|256380525|ref|YP_003104185.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924828|gb|ACU40339.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 198

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             R   +  LA   A+    +         +LT RE++ L  +S+GK++ +I   L +S 
Sbjct: 106 ASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 165

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  +   + RK   + R+ A+A+  R  +V
Sbjct: 166 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|159900604|ref|YP_001546851.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893643|gb|ABX06723.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 191

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L+        S       D +L+ RE E L  ++EG T+ +IA  L IS +TV  ++++
Sbjct: 107 VLSPSILAQIHSPPQPEPLDNQLSEREHEVLQLLAEGLTNRQIAQRLIISEHTVKFHVSA 166

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K    +R+ AI    +  ++
Sbjct: 167 LLGKLDVSSRTEAIRVGAQRGLI 189


>gi|51892061|ref|YP_074752.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855750|dbj|BAD39908.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 218

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 14/190 (7%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-------FCPVFHT 115
           +      QE     +V    P  ++  + +   D      ++  ++          V   
Sbjct: 28  IGEASNGQEAL--ELVPKLKPDLVLMDINMPVLDG-VEATRKLKQMYPDLKVVILTVSEI 84

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
             +         + Y         +   L         I    +    +L  ++     +
Sbjct: 85  DKDLFEAIKAGADGYLLKNLGPEELVSSLRAAISGEAPISS--VMAAKMLKEFRQPRANT 142

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                G+  +L+ RE+E L   S G T  EIA  L ++ +TV N++  I+ K   + RS 
Sbjct: 143 TGKQPGQ--QLSPREIEVLRLASTGLTYKEIAAKLYVAESTVKNHMRHILEKLHLRNRSE 200

Query: 236 AIAYAVRNNI 245
           A+ YA+R  +
Sbjct: 201 AVGYAIRTGL 210


>gi|37519948|ref|NP_923325.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210940|dbj|BAC88320.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 212

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + YC    +  ++   ++ +           +W  G +AAY     +S      +D++LT
Sbjct: 103 DGYCVKGIEPEQLLQAILQVRSGH-------VWWDGRVAAY----LRSGPEPERRDYQLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  ++ G ++ +I   L IS  TV  ++ +I+RK   + R+ A   A++  +
Sbjct: 152 PRERQVLGLLANGLSNQQIGRQLFISVGTVQVHVHTILRKLGARDRTQAAILALQEGL 209


>gi|257054540|ref|YP_003132372.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256584412|gb|ACU95545.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 198

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             R   +  LA   A+    +         +LT RE++ L  +S+GK++ +I   L +S 
Sbjct: 106 ASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 165

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  +   + RK   + R+ A+A+  R  +V
Sbjct: 166 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|16330518|ref|NP_441246.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1653009|dbj|BAA17926.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 226

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 106 TELFCPVFHTLPENIT-PPAGMDNRYCSLTFDVARIRIGLMLLFPKG---RIILRDRLWE 161
             +     H+ P  I          YC        + + +  +         I    +  
Sbjct: 82  LPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVAAGAFWWDAIASQEIQT 141

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
               ++    +    D     +  LT RE+E L+ +++GK++ EIA  L I+  TV  ++
Sbjct: 142 AFQHSSSTGAVLPLADADG--ENPLTKRELEILSLVAKGKSNQEIADELYIAPGTVRVHV 199

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I+RK   + R+ A   A+   +V
Sbjct: 200 HTILRKLEVRDRTQAALLAIERRLV 224


>gi|85707086|ref|ZP_01038174.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           217]
 gi|85668372|gb|EAQ23245.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           217]
          Length = 224

 Score = 96.6 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 73/222 (32%), Gaps = 15/222 (6%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV-SSDW-PFDLVRCM-----A 91
           +  T  +   +  L +     H      +         +    DW    L          
Sbjct: 1   MAQTNPFRQFLDDLRDRFELDHVAYAGMNPISGASHGHMTYGEDWTAHYLQNKYYEIDPT 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L +       +          F T+  +     G+ +R  ++        +G + +    
Sbjct: 61  LLKARHSIAPVDWHRLERGAEFQTIFRDA-RDFGISDRGLTIPIHGPYGDVGGLSINRDC 119

Query: 152 R-----IILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSD 204
                 +++ + + ++   A +  +M    D          L+ RE+E L W + GK+  
Sbjct: 120 SDREWHLLISEIIGDLQSAAVHMHDMVIQADPLTRMLNSPSLSTREIEILQWTAAGKSQQ 179

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I  IL IS  TV  ++ S  +K    T   AI  A+   ++
Sbjct: 180 DIGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221


>gi|313110609|ref|ZP_07796491.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882993|gb|EFQ41587.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 226

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 74/227 (32%), Gaps = 18/227 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M  +     +   +  +    G   F       F          S++P +        + 
Sbjct: 1   MSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDY 60

Query: 96  DKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                +++     + P+     +              G+ + + S+        I ++ L
Sbjct: 61  TSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGW-SIPVRGKYGLISMLSL 119

Query: 148 FPKGRIILRDR--------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                 I            LW   +L A   ++     V    +  LT RE E L W + 
Sbjct: 120 VRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPES-NVRLTARETEMLKWTAV 178

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT  EI +IL I + TV  +I + MRK  +  ++ A   A    ++
Sbjct: 179 GKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 225


>gi|259505660|ref|ZP_05748562.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259166742|gb|EEW51296.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
          Length = 212

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ EI  IL +S  TV +++  I  K   ++R+ A+A A    +
Sbjct: 152 LTPRELEVLKLVAGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGL 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|300932860|ref|ZP_07148116.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 252

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 41/73 (56%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S D   G    LT RE E L  ++ G ++ EIA  L IS  TV  ++  ++ KT ++ R
Sbjct: 172 PSLDDDLGLVDPLTPREREILCLVATGHSNQEIAEELFISLPTVKTHVGRVLTKTGSRDR 231

Query: 234 SGAIAYAVRNNIV 246
             A+ +A+++++V
Sbjct: 232 VHAVLFALKHHLV 244


>gi|218437173|ref|YP_002375502.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218169901|gb|ACK68634.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 234

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            ++ +    +++ LT RE+E L  I +G ++  IA  L I+  TV  ++ +I+ K     
Sbjct: 160 VEAENNQSVENYSLTDRELEVLQLIVDGYSNAAIADQLFITVGTVKTHVRNILNKLCADD 219

Query: 233 RSGAIAYAVRNNIV 246
           R+ A   A+R  +V
Sbjct: 220 RTQAAVRALRAGLV 233


>gi|57233907|ref|YP_182061.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224355|gb|AAW39412.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 225

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----F 184
            C      A   I  +    +G   + + L     LA      F+   +  GKD      
Sbjct: 103 ACLKKSSTADELIETIRRANRGEYPINESLMTSPNLAKQVLAQFQDVSL-LGKDASNFVT 161

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT R+ + LT I+ G T+ +IA  L IS  T+ N++++I+RK     R+ A+  A+R  
Sbjct: 162 PLTNRKKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKLNANDRAHAVVVAIRCG 221

Query: 245 IV 246
           ++
Sbjct: 222 LI 223


>gi|297531030|ref|YP_003672305.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297254282|gb|ADI27728.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
          Length = 200

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 44/80 (55%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +Y+       D+ +     LT  E+  L  I+  KT+ EI   L IS+ TV ++++SI+R
Sbjct: 120 SYRGVKSFPTDLAFHDGSPLTDMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILR 179

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+R+GA+  A R  ++
Sbjct: 180 KLHVKSRAGAVGKAFRLGLL 199


>gi|74316369|ref|YP_314109.1| LuxR family transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055864|gb|AAZ96304.1| Transcriptional Regulator, LuxR family [Thiobacillus denitrificans
           ATCC 25259]
          Length = 258

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 17/195 (8%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT--ELFCPV 112
           Y    H+  V         L   ++ +W       +  +  D      +R    EL    
Sbjct: 69  YFKDDHYHRVIHPAD---GLIHQLTHEWGAKREPRLIAALTDDPDGWHRRLLDLELKNLA 125

Query: 113 FHTL-PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           FH L   +             + FD        +LL      + R       +LA  +A 
Sbjct: 126 FHGLCRVDGQMWGYASFSRLRVPFDARLALFMELLLPHLLVTLAR-------VLAN-EAR 177

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                D H G    +T RE E L W+ +GKT++EIA ILG+S  TV N++   M+K   +
Sbjct: 178 TRSLGDRHAGL---ITAREAEVLAWVRDGKTNEEIAAILGLSMLTVKNHLRHAMQKLVVR 234

Query: 232 TRSGAIAYAVRNNIV 246
           TR  A+A A+    +
Sbjct: 235 TRGQAVARAIALGFL 249


>gi|239932624|ref|ZP_04689577.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440983|ref|ZP_06580373.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343878|gb|EFE70834.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V+ D    L+  +  +       V + P  L    F              + +     
Sbjct: 50  DVVAMDVRMPLLDGIEATRALLR-TVEEPPKILVVTTFENDEYVYEALRAGADGFLLKRA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A I   + L+     ++    +  +   A Y  +          +   LT RE E L 
Sbjct: 109 RPAEIVHAVRLVAEGESLLFPASVRRLA--AEYGDDGGNRAARDVLERARLTEREAEVLR 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +S  TV +++++++ K   + R+ A+  A  +  V
Sbjct: 167 LMARGLSNAEIAARLVVSTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217


>gi|229822851|ref|ZP_04448921.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271]
 gi|229787664|gb|EEP23778.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271]
          Length = 211

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 14/172 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--GMDNRYCSL 133
            I+  D   D++  +  ++K     +   P      V   L +    PA     + Y   
Sbjct: 49  DIILMDLVMDVMDGIEATQK----IMADWPQAKIIIVTSFLDDEKVYPAMEAGASSYLLK 104

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           T   A I   +   +   ++I      +I      QA              ELT RE++ 
Sbjct: 105 TSSAAEIAQAIRSTYQGHKVIEPAVTEKIIEHRLDQA--------RPKPHDELTNRELDV 156

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  I +G ++  IA  L I+  TV  ++++I  K   + R+ A  YAV +++
Sbjct: 157 LRLIGQGYSNQAIAEELVITLKTVKTHVSNIFTKLEVEDRTQAAIYAVHHHL 208


>gi|17232127|ref|NP_488675.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133772|dbj|BAB76334.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 219

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 82/219 (37%), Gaps = 22/219 (10%)

Query: 33  LARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + +++ +D        + AL       E VG +    +  DL  +   D +V  D    +
Sbjct: 1   MIKVLLVDDQNLIRQGLRALLELEPDIEIVGEAENGKIAIDLIPQFHPD-VVLMDMRMPI 59

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143
           +  +A ++      + Q    +   V  T  ++    A +      Y         + + 
Sbjct: 60  MDGVAATQ-----EIQQNFPNVKVLVLTTFDDDEYVKAALQHGAMGYLLKDTPSEELAVA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQA--NMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +  +      +    + +  LL  +Q+  N       H     +LT RE E L  I+ G 
Sbjct: 115 IRAVEKGYTQLGPGIVKK--LLVQFQSTPNHTPPAPTHLA---DLTPREKEVLRLIAAGA 169

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            + EIA  L IS  TV N++ +I+ +   + R+ A   A
Sbjct: 170 NNREIAQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 208


>gi|256826588|ref|YP_003150547.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582731|gb|ACU93865.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 261

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 3/170 (1%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +V  D    +   +A + K      L +   L    F              + +     +
Sbjct: 91  VVLMDIRMPVEDGIAATRKIVGDTALAQTRVLVLTTFDIDEYVYDALQAGASGFMLKDAE 150

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   +  +     +I         L+  + ++  ++     G   +LT RE E L +
Sbjct: 151 PDDIVRAVRTVAAGDALIQPSITRR--LIETFVSSRPRTS-AAAGGLVDLTDREREILRF 207

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G +++EIA  L IS  TV  ++A IM K     R+  +  A  + +V
Sbjct: 208 VARGMSNEEIADDLVISPATVKTHLARIMGKLDAHDRAQLVVAAYESGLV 257


>gi|224552984|gb|ACN54742.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           + ++R   +G L          Y  H+  K+  L+ RE + L W+  GKT  E+AVIL I
Sbjct: 115 MEKNRSEIVGFLVNLHQKTLNLYSQHYQKKNVFLSPRERQILKWVGAGKTYAEVAVILSI 174

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV  ++ ++M+K      + A+       ++
Sbjct: 175 AERTVKFHMGNVMKKLGVNNATHAVKLGTELRLL 208


>gi|16329388|ref|NP_440116.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1651869|dbj|BAA16796.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 282

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 19/184 (10%)

Query: 80  SDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITP------PAGMDNRY 130
              P  ++  + + + D Y     + +       PV       +T         G D  +
Sbjct: 98  HHLPALVISDIMMPQVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDA-F 156

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHWGKD- 183
            S  FD   +   +  L  + +           L      + A +  + +   +H     
Sbjct: 157 LSKPFDPDELEAIVRNLLARQQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSP 216

Query: 184 --FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              + T RE   L  +S+G  + EIA  L  S   V  Y++ +  KT T +R+  + +A+
Sbjct: 217 IKLDFTPREQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFAL 276

Query: 242 RNNI 245
           ++ +
Sbjct: 277 QHGL 280


>gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 229

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 17/180 (9%)

Query: 83  PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTL-----PENITPPAGMDNRYCSLT 134
           P  ++  + + + D Y     + + P     PV          + I       + Y S  
Sbjct: 48  PDLVITDIMMPQVDGYQFLKKLREDPRFKSLPVIFLTARGMTTDRIQGYQAGCDAYLSKP 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDR---------LWEIGLLAAYQANMFKSYDVHWGKDFE 185
           FD   +   +  L  +     ++            E+  +    A              +
Sbjct: 108 FDTDELVAIVENLLERRATTAQETAGTADLGNIEKELTAIREMLAQRGNISQTPPPIRID 167

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 168 FTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 227


>gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 231

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 17/180 (9%)

Query: 83  PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCSLT 134
           P  ++  + + + D Y     + +       PV          + I       + Y S  
Sbjct: 50  PELVISDIMMPQVDGYQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKP 109

Query: 135 FDVARIRIGLMLLFPKGRIILRD-----RLWEIGL----LAAYQANMFKSYDVHWGKDFE 185
           FD   +   +  L  + R  L+      RL EI      L                   +
Sbjct: 110 FDPEELEALIKSLIERRRQSLQATSENARLEEIARDIRELKQQVGQQNTFTTTPPPIKID 169

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ +
Sbjct: 170 LTPREQSVLDLVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 229


>gi|23098617|ref|NP_692083.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776844|dbj|BAC13118.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 209

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   T     I   +        +I         ++  +Q+   K +D       +LT R
Sbjct: 101 YILKTSTANEIANAIKKAASGENVIEPK--VASKMMTNFQSQKKKLHD-------DLTER 151

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I EG T+ EI   L I   TV  ++++I+ K     R+ A  Y  RN ++
Sbjct: 152 EREVLLCIGEGLTNQEIGEKLYIGVKTVKTHVSNILSKLDVHDRTQAAVYVHRNKLL 208


>gi|257792552|ref|YP_003183158.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|325832688|ref|ZP_08165451.1| prevent-host-death family protein [Eggerthella sp. HGA1]
 gi|257476449|gb|ACV56769.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|325485827|gb|EGC88288.1| prevent-host-death family protein [Eggerthella sp. HGA1]
          Length = 228

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 5/178 (2%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           +    +V  D     +  +  +   +    L+    L    F          A   + + 
Sbjct: 48  RLHPDVVLMDIRMPRMNGIEATRAIRDDAALENVHVLILTTFDLDEYVYDALAAGASGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TG 188
               +   I   + ++     +I         L+  + A    S          L   T 
Sbjct: 108 LKDAEPDEIASAVRVVAQGDALIEPSITRR--LIETFVAARPASLGGAAAVAAGLRTLTD 165

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  ++ G T+DEI   L IS  TV  ++A IM K     R+  +  A    +V
Sbjct: 166 REREILALVARGFTNDEIGSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEGGLV 223


>gi|302550833|ref|ZP_07303175.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468451|gb|EFL31544.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 215

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V    +G  +  P    ++   L E   LA+ 
Sbjct: 82  HADVLEAVKSGATGYLLKSASTEELRDAVRSTAVGDPVFTPGLAGLV---LGEYRRLASE 138

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    + D    K   LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 139 PA---PAPDADEPKAPRLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 196 QLHNRVELVRYAIERGL 212


>gi|291440146|ref|ZP_06579536.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343041|gb|EFE69997.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 201

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 5/137 (3%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++   L E   LA+ 
Sbjct: 67  HADVLEAVKSGATGYLLKSASTEELQEAVRRTAAGDPVFTPGLAGLV---LGEYRRLASE 123

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A   +  D    K   LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 124 PAGPAQGDD--GSKAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 181

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 182 QLHNRVELVRYAIERGL 198


>gi|269126536|ref|YP_003299906.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311494|gb|ACY97868.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 1/140 (0%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F      I       + +         +   + ++     I+       +  
Sbjct: 80  PRVLILTTFDLDEYVIEAVRAGASGFLLKDAPPEDLVSAIRIVAAGDAIVAPSVTRRLLD 139

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             A +    +      G +  LT RE E L  ++ G ++ EIA  L +S  TV  ++ ++
Sbjct: 140 KFASRLPSMRQTPPPPGLET-LTEREREVLKHVARGLSNAEIARELVVSETTVKTHVGNV 198

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           + K   + R  A+ YA    
Sbjct: 199 LAKLGLRDRVQAVVYAYETG 218


>gi|259908860|ref|YP_002649216.1| Regulatory protein [Erwinia pyrifoliae Ep1/96]
 gi|224964482|emb|CAX55992.1| Regulatory protein [Erwinia pyrifoliae Ep1/96]
          Length = 240

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 169 QANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            A++ K  D+       +L+ RE+E L W +EGKTS EI++IL IS NTVN +   + ++
Sbjct: 162 MASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKR 221

Query: 228 TATKTRSGAIAYAVRNNIV 246
                ++   +YA    ++
Sbjct: 222 FNAPNKTQIASYAAAIGLI 240


>gi|307302498|ref|ZP_07582255.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307316172|ref|ZP_07595616.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|86278997|gb|ABC88593.1| N-acyl homoserine lactone receptor [Sinorhizobium meliloti]
 gi|306898012|gb|EFN28754.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306903168|gb|EFN33758.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 246

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 83/239 (34%), Gaps = 24/239 (10%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
             LA +  +            L +  G   + +VR     E  L  +++  WP    +  
Sbjct: 8   QFLALLEEMKTREEILPEFERLLDRCGFDFYGIVRQPKPHENPLRLLLAGRWPEGWPQIY 67

Query: 91  A-------------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
                         L    + +                  E++   A     +    F V
Sbjct: 68  IRKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGYIFPV 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF----------KSYDVHWGKDFELT 187
              R GLM     G  ++     E+ L  A    +F             ++    + ++T
Sbjct: 128 -HGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMT 186

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L ++++G TS++I  +L IS +TV+ Y+  I  K   K R   +A A R  ++
Sbjct: 187 RREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAIAFRLGLI 245


>gi|90421195|ref|ZP_01229096.1| two-component response regulator, LuxR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334572|gb|EAS48355.1| two-component response regulator, LuxR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 299

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 40/80 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL   Q     +          ++ RE E L W+S GK++ +IA IL +S  TVN ++ +
Sbjct: 215 LLRVSQVASDATLIASLNAKLPISPREAEVLLWLSRGKSNQDIADILKLSVRTVNKHLET 274

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           I RK   + RS A A A+  
Sbjct: 275 IFRKLGVENRSAATAIAMEQ 294


>gi|311103688|ref|YP_003976541.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758377|gb|ADP13826.1| bacterial regulatory protein, LuxR family protein 2 [Achromobacter
           xylosoxidans A8]
          Length = 83

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 37/78 (47%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             +              L+ R+  CL W + GKTS E A ILG+S +TVN ++ +   K 
Sbjct: 1   MGSALNPSSSPAQAIKPLSERQASCLHWAALGKTSWETARILGVSESTVNFHLCNACEKL 60

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + R  A+  A+R  ++
Sbjct: 61  GVRGRRAAVVAALRLGLI 78


>gi|264677605|ref|YP_003277511.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262208117|gb|ACY32215.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 195

 Score = 96.2 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           LLV   L + Q  D +         V  +A+S  +K    ++              + + 
Sbjct: 30  LLVDLSLSEGQGADLLELVQLRMPNVLSIAISSSEKDDIAIE-----------AFEKGVV 78

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                ++ + S +  V  +  G   + P   I+ +  L +I     ++ +  +       
Sbjct: 79  GYLLKNSWFGSYSQAVLEVANGGASISP---IVAKKILPKI-----FKYSALEEAPFENK 130

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE E L  I++GK + EI   + IS  TV+ ++ +I RK   +TR+ A+ YAV
Sbjct: 131 KLEKLTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAV 190

Query: 242 RNNIV 246
              I+
Sbjct: 191 LKGII 195


>gi|332974494|gb|EGK11416.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 224

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 16/134 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L            R   +T  +     G   L PK    L  R+ +   L      
Sbjct: 91  VFPALEAGAFSYLLKTARAEEITAAIRSAHRGESTLEPKVSARLLKRVRKPQPL------ 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        +LT RE E L  + + KT+ +IA IL I   TV  ++++I+ K   +
Sbjct: 145 ----------PHEDLTIREGEVLRLLGQAKTNQQIADILMIGIKTVKTHVSNILSKLGLE 194

Query: 232 TRSGAIAYAVRNNI 245
            R+ A  YAV++ +
Sbjct: 195 DRTQAAVYAVKHGL 208


>gi|310767240|gb|ADP12190.1| DNA-binding transcriptional activator SdiA [Erwinia sp. Ejp617]
          Length = 240

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 169 QANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            A++ K  D+       +L+ RE+E L W +EGKTS EI++IL IS NTVN +   + ++
Sbjct: 162 MASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKR 221

Query: 228 TATKTRSGAIAYAVRNNIV 246
                ++   +YA    ++
Sbjct: 222 FNAPNKTQIASYAAAIGLI 240


>gi|190573276|ref|YP_001971121.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190011198|emb|CAQ44808.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 213

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +       L  P  +    F      +         Y     
Sbjct: 49  DVVLMDMRMPVMSGLEALQVLSRQEQL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +A++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 107 TLAQLVGAIRTVAEGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|148654958|ref|YP_001275163.1| response regulator receiver protein [Roseiflexus sp. RS-1]
 gi|148567068|gb|ABQ89213.1| response regulator receiver protein [Roseiflexus sp. RS-1]
          Length = 204

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +   V       LT RE + L  +S+G ++ +IA  L IS +TV  +++S+  K    
Sbjct: 128 HRRPLSVAEPVGEPLTARERDVLELVSQGLSNKQIAQKLQISEHTVKFHLSSLFAKLGVS 187

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A+    R  I+
Sbjct: 188 SRTEAVNRGARQGII 202


>gi|307324556|ref|ZP_07603763.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889800|gb|EFN20779.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 225

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P     L      +   A     
Sbjct: 94  VYEALRAGASGFLLKDASADELAHAVRVVAAGDALLAPNITKRLIGEFSRVSAAA----- 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +  +LT RE E LT I++G ++ EIA  L ++  TV  +++ I+ K   +
Sbjct: 149 ---PRGPLRDRVGDLTERETEVLTLIAQGLSNAEIAARLVVAEQTVKTHVSRILFKLGLR 205

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A    +V
Sbjct: 206 DRTQAAVFAYETGLV 220


>gi|291442172|ref|ZP_06581562.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345067|gb|EFE72023.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 224

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V  RP  L    F              + +       A +   + ++     ++      
Sbjct: 77  VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKNAPPADLIAAVRVVASGDALLAPSVTR 136

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              L+A +             +   LT RE E LT ++ G+++ EIA  L ++  TV  +
Sbjct: 137 R--LIADFAKQRPAVRGKPALRLKGLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTH 194

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ ++ K   + R+ A+ +A  + +V
Sbjct: 195 VSRVLTKLDLRDRAQAVVFAYESGLV 220


>gi|269125106|ref|YP_003298476.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268310064|gb|ACY96438.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 954

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                R++    L        L  RL E     A +  +  +        + LT RE+E 
Sbjct: 845 DLAARRLQEAEALAGRLRAAPLARRLEE----TARRGRLNGTAPSAARSPYGLTPRELEV 900

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +++G+T+ EIA +L IS  TV+ ++++I+ K    TR  A A A R  +
Sbjct: 901 LRLVAQGRTNREIAEVLFISAKTVSVHVSNILAKLQVPTRGEAAATAHRLGL 952


>gi|21230586|ref|NP_636503.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769421|ref|YP_244183.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992608|ref|YP_001904618.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112164|gb|AAM40427.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574753|gb|AAY50163.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734368|emb|CAP52578.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 213

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +          P  +    F      +         Y     
Sbjct: 49  DVVLMDMRMPVMSGLEALQML--SRNGTLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + ++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 107 SLEQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 163 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|327439935|dbj|BAK16300.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 232

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 1/135 (0%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH         A   N    +      + +G  L     +      L E  L ++    M
Sbjct: 97  FHLNIPRKYIIAENQNSLLVVPITFNHVVVGYFLGTHFHKNFDPQLLMEANLFSSQVGEM 156

Query: 173 FKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++  +    + +L+ RE E +  ++ G +S +IA +L IS  T+  YI S+M KT T 
Sbjct: 157 LFNHPCYVENNEIKLSKREFEVMKCVAFGYSSKQIAHLLEISETTIKQYIKSVMSKTNTS 216

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+A+  +  I+
Sbjct: 217 NRTHAVAFLFQKRIL 231


>gi|296877022|ref|ZP_06901064.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|296431966|gb|EFH17771.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
          Length = 210

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 42/83 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +    +   +S   H     +LT RE + L  +++G  +  IA  L IS  TV  ++++
Sbjct: 123 AIETEVSQKVESRKNHAELHDDLTARERDILALLTKGYENQRIADELFISLKTVKTHVSN 182

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K     R+ A+ YA R+++V
Sbjct: 183 ILSKLEVSDRTQAVVYAFRHHLV 205


>gi|284009120|emb|CBA76124.1| LuxR family transcriptional regulatory protein [Arsenophonus
           nasoniae]
          Length = 243

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 18/192 (9%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITP 122
             D I+ SD   +LV      +      V+ +      P              + +   P
Sbjct: 41  TDDMIIISDLSDELVNNYLNQKTQNIDPVIIKALNQLAPFSWDENIKINSIWPVKKVFEP 100

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRII------LRDRLWEIGLLAAYQANMFKS- 175
              ++    +         + L+ L+    +I      ++    E+  L  +   M  S 
Sbjct: 101 MKMLNISGYAFVLHDHLNNLALLSLYMDKFLIKDIEFFIKSNKGELQGLLIHTHEMLLSL 160

Query: 176 -YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             + +  +    + RE E L W S GKT  EI  IL IS  TV  +I ++++K       
Sbjct: 161 YQNENTTEKIIFSPRESEVLYWCSIGKTYSEIGTILNISTYTVKFHIGNVVKKLGVINAK 220

Query: 235 GAIAYAVRNNIV 246
            AI+ +V+ N++
Sbjct: 221 HAISLSVKLNLI 232


>gi|283478850|emb|CAY74766.1| DNA-binding transcriptional activator SdiA [Erwinia pyrifoliae DSM
           12163]
          Length = 242

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 169 QANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            A++ K  D+       +L+ RE+E L W +EGKTS EI++IL IS NTVN +   + ++
Sbjct: 164 MASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKR 223

Query: 228 TATKTRSGAIAYAVRNNIV 246
                ++   +YA    ++
Sbjct: 224 FNAPNKTQIASYAAAIGLI 242


>gi|269124429|ref|YP_003297799.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309387|gb|ACY95761.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 244

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            G ++    +  +        +  LT RE E L  ++EG +S EIA  L IS  TV  + 
Sbjct: 158 PGAISVLIRSYLEQARQGEEPETPLTPREEEILKLVAEGHSSREIADTLFISVKTVERHR 217

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           A+I+ K   K R     YA+R  ++
Sbjct: 218 ANILAKLGMKDRLELTRYAIRTGLI 242


>gi|312959972|ref|ZP_07774486.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311285756|gb|EFQ64323.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 89

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+E L W SEGKT  EI+ I   S+ TV  ++ +I  K     R  A+  AVR  
Sbjct: 28  PLTPSELEILRWASEGKTVWEISQIRATSQATVKFHLRNIYGKLDVSNRVQAMNEAVRQG 87

Query: 245 I 245
           +
Sbjct: 88  L 88


>gi|330823094|ref|YP_004386397.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|329308466|gb|AEB82881.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 224

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 11/210 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +D        + AL    G    +    D  +  +L   +  D    L   +        
Sbjct: 11  IDDHTLLRRGLVALLSQYGDLCVVGEAGDAAEALRLLPQLRPDVI-LLDNHLPGVRGVDA 69

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGM----DNRYCSLTFDVARIRIGLMLLFPKGRII 154
              L+  ++    +  T+ E+              Y   T D   +   +        ++
Sbjct: 70  IAGLREASQGSRVIMLTVSEDGEDLGAALRHGAQGYLLKTIDGDLLAQAIRRAARGEPVV 129

Query: 155 LRDRLWEIGLLAAYQANMFKSYDV----HWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             + + +  L+AA+Q+      D           +L+ RE E L  I+ G ++ EIA  L
Sbjct: 130 SPEMMGK--LVAAFQSQGAPEPDPGPMPQEDPAPQLSPREQEVLREIARGASNKEIARQL 187

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            I+  TV  ++  I+RK    +R  A  YA
Sbjct: 188 SIAETTVKIHVQHILRKLGLTSRVQAAVYA 217


>gi|256394338|ref|YP_003115902.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256360564|gb|ACU74061.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 225

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L E  +  A   +          +   LT RE E L  I++G+ + EIA  L ++  TV 
Sbjct: 130 LLEPEVATALLDSGSNGAADQGPQAPALTAREREVLVLIAQGRANREIARALVLAEKTVK 189

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++++I+ K     R+ A  +AVR+ I
Sbjct: 190 THVSNILMKLGVADRTQAALWAVRHGI 216


>gi|228990919|ref|ZP_04150883.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
 gi|228768856|gb|EEM17455.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
          Length = 191

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L+    R +  + +    + A     +  +         EL+ RE+E L  I+ G T+ E
Sbjct: 83  LVETVRRGVQGESIMHPRVAARVVNEIRATKQASPDPFSELSERELEVLRLIARGLTNAE 142

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA  L IS  TV  ++++I+ K     R+ A  +A    
Sbjct: 143 IAESLFISGKTVKGHVSNILSKLHMLDRTKAAVFAWEQG 181


>gi|222150233|ref|YP_002551190.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221737215|gb|ACM38178.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 246

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 10/178 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +  +  +  +  PF     +    +D ++  +QR   +    F      I P  G     
Sbjct: 76  DPAIRYLAQAQRPFRWSETLTAFSQDPHFKRMQRMM-MDAQRFGLEEGYIFPIHGRGGLL 134

Query: 131 CSLTFDVARIRIG--LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            ++T     + +    ++LF         RL EI           +   +    D  LT 
Sbjct: 135 ANMTIGGRPVELTPIEIMLFDTVAKCAFWRLAEIN-------GEDELLSMVQKVDVRLTR 187

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L ++ EG TS+E++ +L IS +TV+ Y+  +  K   K R   +A A R  ++
Sbjct: 188 RELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHMVAIAYRLGLI 245


>gi|218515977|ref|ZP_03512817.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 173

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKD 183
           GM+        D A  R  + +   +   +L   + +I  +A    +      +    K 
Sbjct: 51  GMEKGAYFPVHDAAGGRGAMSISGSRNFTML--EMAKILFIATLIYDRLSQLTLNEKHKP 108

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              T  E++CL   + G+ S EIA +L +S N VNN+I S+++K    TR+ A+  A+R 
Sbjct: 109 IAFTSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRL 168

Query: 244 NIV 246
           NI+
Sbjct: 169 NII 171


>gi|293608422|ref|ZP_06690725.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828995|gb|EFF87357.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 319

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  I  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310


>gi|239503588|ref|ZP_04662898.1| response regulator [Acinetobacter baumannii AB900]
          Length = 319

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  I  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310


>gi|261419001|ref|YP_003252683.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765817|ref|YP_004131318.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375458|gb|ACX78201.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317110683|gb|ADU93175.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 200

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 44/80 (55%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +Y+       D+ +     LT  E+  L  I+  KT+ EI   L IS+ TV ++++SI+R
Sbjct: 120 SYRGVKSFPTDLAFHDGSPLTEMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILR 179

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+R+GA+  A R  ++
Sbjct: 180 KLHVKSRAGAVGKAFRLGLL 199


>gi|317488844|ref|ZP_07947374.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|316911918|gb|EFV33497.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 228

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 5/178 (2%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           +    +V  D     +  +  +   +    L+    L    F          A   + + 
Sbjct: 48  RLHPDVVLMDIRMPRMNGIEATRAIRDDAALENVHVLILTTFDLDEYVYDALAAGASGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TG 188
               +   I   + ++     +I         L+  + A    S          L   T 
Sbjct: 108 LKDAEPDEIASAVRVVAQGDALIEPSITRR--LIETFVAARPASLGGAAAVAAGLRTLTD 165

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  ++ G T+DEI   L IS  TV  ++A IM K     R+  +  A    +V
Sbjct: 166 REREILALVARGFTNDEIGSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEGGLV 223


>gi|296133351|ref|YP_003640598.1| two component transcriptional regulator, LuxR family [Thermincola
           sp. JR]
 gi|296031929|gb|ADG82697.1| two component transcriptional regulator, LuxR family [Thermincola
           potens JR]
          Length = 226

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +      F+   +   + ++     ++      ++           +  DV       L 
Sbjct: 101 DGLLLKQFNSEELIRSIHMVLEGKALLDPSITNKVLDRVKNGQPKPQPKDVAL-----LN 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E   L  I+EGKT+ EIA IL +S NT+ NY++ I+ K     R+ A AYAVRNN+
Sbjct: 156 PQERRILGLIAEGKTNKEIAQILTLSNNTIKNYVSGILSKLNFSNRAEAAAYAVRNNL 213


>gi|238786137|ref|ZP_04630091.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
 gi|238712965|gb|EEQ05023.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
          Length = 245

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 13/122 (10%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--ANMFKSYDVHWGKDF 184
           D+ Y   + ++ + +I ++L+    +           +L  YQ   N  K       +  
Sbjct: 132 DSIYFDESIEINKEKIQMLLILTHDK-----------MLGLYQKNNNENKELGRSAAERE 180

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             + RE E L W S GKT  EIA+ILGI R+TV  +I +++RK        AI   +   
Sbjct: 181 IFSPRENEILYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELK 240

Query: 245 IV 246
           ++
Sbjct: 241 LI 242


>gi|134103142|ref|YP_001108803.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003915|ref|ZP_06561888.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915765|emb|CAM05878.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 151

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             R   +  LA   A+    +         +LT RE++ L  +S+GK++ +I   L +S 
Sbjct: 59  ASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 118

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  +   + RK   + R+ A+A+  R  +V
Sbjct: 119 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 150


>gi|56421574|ref|YP_148892.1| hypothetical protein GK3039 [Geobacillus kaustophilus HTA426]
 gi|56381416|dbj|BAD77324.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 391

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G+   L+ RE+E L  +++G ++ E A  L +S  TV +YI+S +RK   K R+ A+A 
Sbjct: 324 EGRAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAK 383

Query: 240 AVRNNIV 246
           A+R  ++
Sbjct: 384 ALRLGLI 390


>gi|297529073|ref|YP_003670348.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252325|gb|ADI25771.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 500

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  ++EG ++ E A  L +S  TV +Y+++I++K   K R+ AI  A+R+ 
Sbjct: 439 HLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498

Query: 245 IV 246
           I+
Sbjct: 499 II 500


>gi|146340687|ref|YP_001205735.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146193493|emb|CAL77509.1| putative transcriptional regulatory protein, LuxR family
           [Bradyrhizobium sp. ORS278]
          Length = 133

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVI 209
           R++      ++ ++    ++  ++ + H      F+LT RE + L  ++EG ++ EIA  
Sbjct: 35  RLVAPGESADVAVIRPGGSDATENGETHGRDSDAFQLTARERDVLALMAEGCSNKEIARS 94

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LGIS +T   ++ S++ K     R+ A+A+A R  I+
Sbjct: 95  LGISVHTAKFHVGSLLDKLDATGRTDAVAHAARRGII 131


>gi|326382104|ref|ZP_08203797.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199530|gb|EGD56711.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 213

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A + ++          LT RE E L  +++GK++ E+   L IS +TV  +I +++RK 
Sbjct: 136 AAIVLRTVSGEQESTATLTDREHEVLKLLADGKSNAEVGRALFISESTVKFHIRNVIRKL 195

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+  A +  ++
Sbjct: 196 GVTKRTDAVYVASKRGLI 213


>gi|291486493|dbj|BAI87568.1| hypothetical protein BSNT_05953 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 218

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214
           + ++     A   +  F++      ++     T RE+E L  ++ G  +++IA  L +S 
Sbjct: 126 EAIFRTVTAAKIISETFRAKQQPHAEELAEPFTKRELEVLQQMAYGLRNEDIAEKLFVSE 185

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  ++  I++K   + R+ A+ +A+RN IV
Sbjct: 186 STVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|225873707|ref|YP_002755166.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794522|gb|ACO34612.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 213

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  I +G+++ EIA  L IS  TV  +I +++ K     R+ A   A++  
Sbjct: 149 ELTARELDVLRLIVQGRSNREIAADLHISEATVKTHINNLLSKLGVSDRTQAATTALQRG 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|298489796|ref|YP_003719973.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298231714|gb|ADI62850.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 218

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 8/171 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNR--- 129
            +V    P  ++  + +   D       +          V  T  +++   A + N    
Sbjct: 41  HLVKQLQPDVVLMDIRMPIIDGVAATKTIQTHFPATKVLVLTTFDDDLYIKAALQNGAMG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         + + +  +      +  + + +  LL  +                ELT R
Sbjct: 101 YLLKDTPSEELAVAIRAVDKGFSQLSPEIVKK--LLTQFPTTAPDPVKSIPPSLVELTPR 158

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           E + L  I+ G ++ EIA  L IS  TV N++ +I+ +   + R+ A   A
Sbjct: 159 EKQVLRLIANGASNREIAHTLYISEGTVKNHVTNILSRLNLRDRTQAAILA 209


>gi|261418220|ref|YP_003251902.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319767820|ref|YP_004133321.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261374677|gb|ACX77420.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317112686|gb|ADU95178.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 500

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  ++EG ++ E A  L +S  TV +Y+++I++K   K R+ AI  A+R+ 
Sbjct: 439 HLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498

Query: 245 IV 246
           I+
Sbjct: 499 II 500


>gi|33326387|gb|AAQ08608.1| putative transcription regulator [Agrobacterium vitis]
          Length = 248

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 10/178 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +  +  +  +  PF     +    +D ++  +QR   +    F      I P  G     
Sbjct: 78  DPAIRYLAQAQRPFRWSETLTAFSQDPHFKRMQRMM-MDAQRFGLEEGYIFPIHGRGGLL 136

Query: 131 CSLTFDVARIRIG--LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            ++T     + +    ++LF         RL EI           +   +    D  LT 
Sbjct: 137 ANMTIGGRSVELTPIEIMLFDTVAKCAFWRLAEIN-------GEDELLSMVQKVDVRLTR 189

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L ++ EG TS+E++ +L IS +TV+ Y+  +  K   K R   +A A R  ++
Sbjct: 190 RELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHMVAIAYRLGLI 247


>gi|229817781|ref|ZP_04448063.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM
           20098]
 gi|229785570|gb|EEP21684.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM
           20098]
          Length = 248

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ E   +AA    
Sbjct: 107 VMAAINAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGA 166

Query: 172 MFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
              S                ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 167 HGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLTTVKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 227 LSKINARDRVQAVVFAYENHLV 248


>gi|307711412|ref|ZP_07647828.1| response regulator [Streptococcus mitis SK321]
 gi|307616785|gb|EFN95969.1| response regulator [Streptococcus mitis SK321]
          Length = 210

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
            R  ++       ++   R    G LA  Q    K   +  H     +LT RE + L  I
Sbjct: 97  ARGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLI 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  +  IA  L IS  TV  ++++I+ K     R+ A  Y+ ++++V
Sbjct: 157 AKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYSFQHHLV 205


>gi|300869019|ref|ZP_07113622.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300332999|emb|CBN58814.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 228

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELT 187
            YC        + + +  +        +    EI   +   ++      ++    +  LT
Sbjct: 105 GYCLKGIAAETLVLAIRSVAAGASWWDKAATTEIRSAITNNESKFVPKSEL----ENPLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ GK++ EIA IL I+  TV  ++ +I++K   + R+ A   A++  +V
Sbjct: 161 KREQEILALVAAGKSNQEIAQILYIASGTVRVHVHAILQKLEVRDRTQAAVVAIQKGLV 219


>gi|289705344|ref|ZP_06501740.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557859|gb|EFD51154.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 230

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 13/170 (7%)

Query: 87  VRCMALSEKDKYYNVLQRP---TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   +   +    +L+RP     +    F              + +         +   
Sbjct: 62  VRMPEMDGIEATRALLRRPDAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAPPEELLAA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTW 196
           +  +     +I          L  + A   +S  V   +  E       LT RE E L  
Sbjct: 122 IRTVHRGDAVIAPSTTRR---LLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVL 178

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  + EIA  L +S  TV  ++  ++ K   + R  A+  A R  +V
Sbjct: 179 MAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLV 228


>gi|56421302|ref|YP_148620.1| hypothetical protein GK2767 [Geobacillus kaustophilus HTA426]
 gi|56381144|dbj|BAD77052.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 500

 Score = 96.2 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  ++EG ++ E A  L +S  TV +Y+++I++K   K R+ AI  A+R+ 
Sbjct: 439 HLSPREIEVLKLVAEGASTYEAAKRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498

Query: 245 IV 246
           I+
Sbjct: 499 II 500


>gi|295697536|ref|YP_003590774.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295413138|gb|ADG07630.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 278

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 39/68 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D   G    LT RE E L  ++EG+++ +IA  L +S  TV N++ASI+ K   + R+ A
Sbjct: 206 DKAPGIVAPLTKREFEVLQLLAEGRSNRDIAKALVLSEKTVKNHVASILDKLVVRDRTQA 265

Query: 237 IAYAVRNN 244
           +  A+R  
Sbjct: 266 VLVALRRG 273


>gi|328881828|emb|CCA55067.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 223

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R  +G  +  P    ++   L E   LA+ 
Sbjct: 90  HADVLEAVKSGATGYLLKSASTEELIDAVRRTAVGDPVFTPGLAGLV---LGEYRRLASE 146

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    +      K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 147 PA---PAAGADEPKAPQLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 203

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 204 QLHNRVELVRYAIERGL 220


>gi|294056650|ref|YP_003550308.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615983|gb|ADE56138.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 208

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 46/93 (49%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L + + E+     Y             +D +L+ RE++ L  ++ G ++ ++A  L IS
Sbjct: 113 LLHEAIVEVAAGGTYFPASIARTMSAHTEDQDLSARELQVLHLVAAGSSNKDVADKLSIS 172

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  ++ +IM+K +   R+  +  A+R  IV
Sbjct: 173 LPTVKMHMTNIMKKLSVYDRTQLVIAAIRKGIV 205


>gi|37223202|gb|AAQ90196.1| LuxR [Vibrio fischeri ES114]
          Length = 230

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 68/203 (33%), Gaps = 20/203 (9%)

Query: 51  ALTEYVGASH---FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
            L+E     H   +L          K D  +  ++P    +    +   +Y  V+     
Sbjct: 28  CLSEIAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDPVVDYSKS 87

Query: 108 LFCP----VFHTLPENITPPAGMDNR-------YCSLTFDVARIRIGLMLLFPKGRIILR 156
              P    VF         P  +            S     A    G++      + I  
Sbjct: 88  HHSPINWNVFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFAHSDKDIYT 147

Query: 157 DRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           D L+         +L +   N  K        D  LT RE ECL W SEGK++ +I+ IL
Sbjct: 148 DSLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGKSTWDISKIL 207

Query: 211 GISRNTVNNYIASIMRKTATKTR 233
           G S  TV  ++ +   K  T  R
Sbjct: 208 GCSERTVTFHLTNTQMKLNTTNR 230


>gi|312136161|ref|YP_004003499.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor owensensis OL]
 gi|311776212|gb|ADQ05699.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor owensensis OL]
          Length = 213

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 11/174 (6%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD- 127
           F E++   +V  D     +R   + E +  +N+  R   +   +  T  E       +  
Sbjct: 43  FLEKRHADVVLMD-----IRMPVMDEIEGTFNIKVRFPSVRVIILTTFCEEDYIKKSLSF 97

Query: 128 --NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y   + D   I   +  +     +I ++       +A      F+++ ++  K   
Sbjct: 98  GADGYILKSSDAQHIIDTIHAVLDGKVVIDKET---ALFVANSLKKDFQNHSINENKLKN 154

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE+E    I++G ++ +I+ IL IS  TV NYI+SI+ K   K R+    Y
Sbjct: 155 LSERELEIARLIAQGYSNKDISKILFISEGTVRNYISSILEKLELKNRTQIAVY 208


>gi|148654624|ref|YP_001274829.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148566734|gb|ABQ88879.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 208

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 8/88 (9%)

Query: 158 RLWEIGLLAA-YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            ++E  L+    QA   +S D        LT RE E L  ++EG T+ EIA  L +   T
Sbjct: 126 AIFEPALMQRILQAQTMRSSDA-------LTEREGEVLKLLAEGLTNAEIAARLSVGEET 178

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNN 244
           V  ++ASI+RK     R+ A  YA+R+ 
Sbjct: 179 VKTHVASILRKLGLAHRTQAAIYALRHG 206


>gi|312792317|ref|YP_004025240.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179457|gb|ADQ39627.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 215

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 20/183 (10%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD- 127
           F E+    +V  D     +R   +   +  +N+  +   +   +  T  E       +  
Sbjct: 43  FLEKGNADVVLMD-----IRMPVMDGIEGTFNIKTKFPNVKVIILTTFCEEDYIKKSLSF 97

Query: 128 --NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
             + Y   + D   I   +  +     +  R+       +A + +N  K     +  +  
Sbjct: 98  GADGYILKSSDAQHIIDTIYAVLDGKVVFDRE-------IALFISNTLKKEASSFSGNVN 150

Query: 185 ----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT RE++ +  I++G ++ EIA +L IS  TV NYI+SI++K   + R+    Y 
Sbjct: 151 VLKNELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQIAIYY 210

Query: 241 VRN 243
            +N
Sbjct: 211 YKN 213


>gi|260220323|emb|CBA27745.1| hypothetical protein Csp_A03820 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 267

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E L W++ GKT+ EI  IL IS  TV N++  + +K     R+ A+  
Sbjct: 206 LTEREAEILKWVALGKTNPEIGSILEISAFTVKNHMQRVFKKLDVSNRAQAVGK 259


>gi|222066054|emb|CAX21482.1| ppoR luxR family protein [Pseudomonas putida]
          Length = 235

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 15/209 (7%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           L + +G  H  L        Q     + S++P + +      +  K     +       P
Sbjct: 28  LVQDLGMEHLGLNIRIQIATQTPRLYLYSNYPSEWIERYQRDDFYKQDPAARLSHGQTTP 87

Query: 112 VFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           V  T                 G+ + +     D+      + +  P G+I + + L+E  
Sbjct: 88  VLWTDELYCEAPQFREAACQHGLRHGWTQSLHDLQHNESQVSVARPAGQIAINE-LYEKA 146

Query: 164 LLAAYQANMFKSY------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
               +  +   S       D       +++ RE+E L W + GKT+ ++A IL +S++TV
Sbjct: 147 ASVQWLCHTLHSVLCEHHLDALCPPQPKMSERELEVLRWSAAGKTAADVASILSLSQSTV 206

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N +I S++ KT    ++GAIA A     +
Sbjct: 207 NFHIRSVITKTNASNKAGAIAIAALRGWI 235


>gi|218247165|ref|YP_002372536.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257060237|ref|YP_003138125.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167643|gb|ACK66380.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256590403|gb|ACV01290.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 226

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 4/135 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V              + +   L   V     G   + P    I+  +  +  L  + Q++
Sbjct: 95  VLGAFRAGADSYCLKNIKIELLIEAVKTTYQGNTWIDPVIAPIILSQ-AKANLSHSCQSS 153

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                   + K   LT RE+E L  I +G ++ +I+  L I+  TV  ++ +I+ K    
Sbjct: 154 SLTEN---FLKHTPLTERELEVLQLIVDGYSNAQISEQLYITVGTVKTHVRNILNKLCAD 210

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   A+R+ +V
Sbjct: 211 DRTQAAVRALRSGLV 225


>gi|308176141|ref|YP_003915547.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743604|emb|CBT74576.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 224

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 3/183 (1%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              D  ++  +D +V  D    ++  ++ ++  K  +V   P+ L    F +    +   
Sbjct: 40  AAVDYCKDNHVD-VVLMDLQMPIMDGVSATKIIK--SVQDSPSVLAITAFSSDEYLVPVL 96

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     +   I   +  +      I      ++                    D
Sbjct: 97  TAGASGYLVKDSEPDEIIRAIHAVHQGTAAISPSVSSDLVSAVREAYRDNSGDIQELVYD 156

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T RE E L  +++G  + EI+  L IS  TV  ++A I  K   + R  A+  A R 
Sbjct: 157 LGITNREFEILKLLAKGLNNPEISKTLAISETTVKTHMAKIFVKLDVRDRVQALVAATRM 216

Query: 244 NIV 246
            ++
Sbjct: 217 GLI 219


>gi|300865100|ref|ZP_07109925.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300336871|emb|CBN55075.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 210

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 12/170 (7%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHT---LPENITPPAGMDNRYCSLTFD 136
           P  +V  + L   D       + ++  ++   +  +     E I   +   + YC     
Sbjct: 47  PDLIVMDIGLPRLDGIAATQQIKEKLPDVRVVMLTSHTAETEIIAALSSGADAYCIKGAS 106

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V R+   +         +      +  +      N+     V      +L+ RE E L  
Sbjct: 107 VERLLAAIAAAAEGATYL------DPQIARTVIENLKPPTPVSTASIGQLSQRESEVLKL 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EG ++ EIA  L +S NT+  ++  IM K A   R  A   A+R  +V
Sbjct: 161 MVEGYSNPEIAAALYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAGLV 210


>gi|297528772|ref|YP_003670047.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252024|gb|ADI25470.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 550

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--------- 183
           + F V   R G++ +  K     ++    +  LAA  A M  S   H G D         
Sbjct: 425 VPFFVGDGRYGVLAVHIKKEREAKEAEVYMTALAAIGAMMI-SGKSHGGNDGTVNIDMLS 483

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  + +G ++ EI+  L IS +TV N+I +I +K     RS  IA   + 
Sbjct: 484 EQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 543

Query: 244 N 244
           N
Sbjct: 544 N 544


>gi|170739988|ref|YP_001768643.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194262|gb|ACA16209.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46]
          Length = 118

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           RL   G  A     +          D  LT RE+E L  ++EG ++  IA  LGIS +T 
Sbjct: 30  RLARPGEAADAVVTLPPGNGP--APDPGLTPREIEVLGLLAEGASNKAIARRLGISVHTA 87

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ S++ K     R+ A+A+A R  ++
Sbjct: 88  KFHVGSLLDKLDATGRTDAVAHAARRGVI 116


>gi|170726344|ref|YP_001760370.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC
           51908]
 gi|169811691|gb|ACA86275.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Shewanella woodyi ATCC 51908]
          Length = 205

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           ++P  + ++ + L +  LL    ++  +S +       ELT R+ E L W+  GK++ EI
Sbjct: 91  MYPAIQYVVINELLKEVLLNKTTSDEPQSNEGECISTIELTQRQHEILHWVKLGKSNWEI 150

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + IL IS +TV  ++  I ++     R  A+
Sbjct: 151 STILSISIDTVKFHLRGIYKRLGVSNRVQAV 181


>gi|331699103|ref|YP_004335342.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953792|gb|AEA27489.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 198

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 156 RDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             R   +  LA   A+    +         +LT RE++ L  +S+GK++ +I   L +S 
Sbjct: 106 ASRPELVAALAHTLASTAVPTPRTPADPGVQLTERELQVLRGMSQGKSNGQIGRELYLSE 165

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  +   + RK   + R+ A+A+  R  +V
Sbjct: 166 DTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|104783716|ref|YP_610214.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112703|emb|CAK17431.1| putative transcriptional regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 234

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 21/225 (9%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
            RM  +  T+S  + M    EY+G S  L +     Q      I+ +++P +        
Sbjct: 19  QRMFEIAVTMSQALGM----EYLGLSLHLHIAAQNPQV-----ILYNNYPREWNEHYRQG 69

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDNRYCSLTFDVARIRIGLM 145
                  ++    +   P   +       P         G+ + +    FD       L 
Sbjct: 70  NFLTIDPIVSMCHKTLKPQIWSDELYCEVPHFRESAMRFGITHGWTQSVFDQRHNESQLS 129

Query: 146 LLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +   K  I +++   +      L     A + + +         L+ RE+E L W + GK
Sbjct: 130 VCRGKRPIKVKEVYDKASQVMWLCNTLHAALSEHHLEKLSPTPNLSERELEVLKWSAGGK 189

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ ++A IL +S +TVN +I S++ KT    ++GAIA A    ++
Sbjct: 190 TAADVATILSLSTSTVNFHIRSVINKTNAANKAGAIAVAFLRGLL 234


>gi|17989461|ref|NP_542094.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1
           str. 16M]
 gi|17985340|gb|AAL54358.1| transcriptional activator, luxr family [Brucella melitensis bv. 1
           str. 16M]
          Length = 235

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 166 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 225

Query: 246 V 246
           +
Sbjct: 226 I 226


>gi|307328222|ref|ZP_07607400.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886056|gb|EFN17064.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 232

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 18/135 (13%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +          +     L   V    +G + + P     L  ++ E          
Sbjct: 94  VMGAVRAGAIGFLLKNAEADDLRNAVKAAAVGQIHVSPAAISRLMGQVREPS-------- 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        +LT RE E LT ++ GK + EIA  L I + TV  Y++ I+ K    
Sbjct: 146 ----------GPEQLTERETEVLTMLARGKANKEIAHDLRIGQQTVKTYVSHILTKLGVH 195

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A  YAV++ +V
Sbjct: 196 SRTQAAVYAVQSGLV 210


>gi|238064361|ref|ZP_04609070.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237886172|gb|EEP75000.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 229

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 2/156 (1%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +A ++       L     L    F              + +     + A +   + ++ 
Sbjct: 63  GLAATQAITADEALAGVRVLILTTFEADEYVFQALRSGASGFLGKGVEPADLLDAIRIVA 122

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++         L+A Y A++  +      +   LT RE E LT ++ G +++ IA 
Sbjct: 123 GGEALLSPKATQ--ALIARYLASLKPATGAVPTELAALTEREREVLTLVAAGLSNNAIAE 180

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L +S  T   ++  IM K   + R+  +  A +  
Sbjct: 181 RLYVSPLTAKTHVNRIMAKLGARDRAQLVVVAYQTG 216


>gi|224552933|gb|ACN54708.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           + ++RL  +  L          Y  H   K+  L+ RE + L W+  GKT  E+AVIL I
Sbjct: 115 MEKNRLKIVSFLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSI 174

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV  ++ ++M+K      + A+       ++
Sbjct: 175 AERTVKFHMGNVMKKLGVNNATHAVKLGTELRLL 208


>gi|297155663|gb|ADI05375.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 221

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 22/170 (12%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPV------------FHTLPENITPPAGMDNRYCSLTFD 136
            + +   D          E  C V            F  L    +     D R   L   
Sbjct: 55  DIRMPGMDGIEAARIICAETACRVIMLTTFGQDGYLFDALRAGASGFLLKDVRRDDLVHA 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V  +  G  LL P              L+AA+ +            D  LT RE E L  
Sbjct: 115 VRMVAAGDSLLAPS---------VTRTLIAAFTSGAVVPPPRTERLDV-LTARERETLRL 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  G ++ EIA  L +S +TV  ++++I+ K   + R  A+  A    +V
Sbjct: 165 LGCGLSNAEIAAALVVSEHTVKTHVSNILTKLGLRDRVQAVIAAYETGMV 214


>gi|228912956|ref|ZP_04076601.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228983471|ref|ZP_04143682.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229119881|ref|ZP_04249141.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201]
 gi|228663628|gb|EEL19208.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201]
 gi|228776261|gb|EEM24616.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228846694|gb|EEM91701.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 214

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 78  VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V    P  ++  + +      +    V ++   +   +  T  ++      ++   + Y 
Sbjct: 39  VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 98

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +   I   ++ +   G ++ +D   +I  +   +            +  +LT REV
Sbjct: 99  LKDMETDAIAQAILTVHSGGAVLPQDITAQI--IKELKKTKVAVECTTPEQLAQLTEREV 156

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 157 DVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 210


>gi|171915509|ref|ZP_02930979.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 209

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 66/184 (35%), Gaps = 23/184 (12%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L R        +D  +      ++ + + L   D    +L         VF    +    
Sbjct: 45  LYREHQPDVVTMDFKMPGQDGAEITKQLRLEFPDARVVLLT--------VFEGEEDIWRA 96

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y S + +V  +   +  +F   +    +       LAA QA            
Sbjct: 97  VQAGASGYVSKSAEVEELLEVVRRIFAGEQYFSPNV---AAKLAARQAR----------- 142

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE++ L  I  G ++ EIA  L +S  TV  +I++ + K     R+ A   AV+
Sbjct: 143 -NALTPRELQVLRHIVAGYSNKEIAAKLHMSEATVKLHISNTLDKLNVADRTQAAIEAVK 201

Query: 243 NNIV 246
             IV
Sbjct: 202 RGIV 205


>gi|158334970|ref|YP_001516142.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158305211|gb|ABW26828.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 77/201 (38%), Gaps = 20/201 (9%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110
           +Y+    + +      +E     ++    P  ++  + + E D Y     V   P   + 
Sbjct: 27  DYLELRGYEVTTAKNGREAL--RVLEKSIPNLIICDVMMPEMDGYAFVKRVRDNPQTSYL 84

Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           PV     +      +T      + Y    F+   +   +     +   +++ +   +   
Sbjct: 85  PVLFLSAKGQIQDRVTGLNTGADVYMIKPFEPDELVAQIEASLKQASRMMQKQANSLEGE 144

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            + Q             D +LT  E + +  +++G ++ EIA  L +S+ TV +++++++
Sbjct: 145 LSVQVPF----------DVDLTPTETKVIQLVAKGMSNREIADDLSVSQRTVESHVSNML 194

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            KT    R+    +A+   +V
Sbjct: 195 GKTGLNNRTELARWAIEQRMV 215


>gi|325121840|gb|ADY81363.1| response regulator receiver signal transduction histidine kinase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 319

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  I  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAH 310


>gi|126464154|ref|YP_001045267.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105965|gb|ABN78495.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 238

 Score = 95.8 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 8/119 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
                 +     R R+G + +    R    + + E G + A    +     +        
Sbjct: 114 ARAGLIVPLPDRRGRVGAITMLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAAAAVSP 173

Query: 185 ------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 +L+ R++E L WI+ GK++ EIA+ILG+SR  V  +++ I++K    +R+ A+
Sbjct: 174 ALAGLAKLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 232


>gi|326772328|ref|ZP_08231613.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326638461|gb|EGE39362.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 240

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 19/171 (11%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTFD 136
           VR   ++  +    + Q        +          F  L    +     D R   L   
Sbjct: 75  VRMPGMNGIEATERIAQECPSTRVLILTTFDLDEYAFAGLRAGASGFLLKDTRPTELAEA 134

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
           +  +  G  ++ P+    +  R+ E+  G L + +A    S D        LT RE E L
Sbjct: 135 IRTVASGEAVVSPR----ITQRMLEMFAGSLPSSEAPAQSSSDPRID---SLTPREKEIL 187

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +S+G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    +
Sbjct: 188 VLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETGL 238


>gi|306837362|ref|ZP_07470241.1| regulatory protein LuxR [Brucella sp. NF 2653]
 gi|306407554|gb|EFM63754.1| regulatory protein LuxR [Brucella sp. NF 2653]
          Length = 235

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I
Sbjct: 166 LTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 225

Query: 246 V 246
           +
Sbjct: 226 I 226


>gi|312138083|ref|YP_004005419.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325675013|ref|ZP_08154700.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|311887422|emb|CBH46734.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325554599|gb|EGD24274.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 220

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 11/176 (6%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-----VFHTLPENITPPAGMDNRYCS 132
           V+S  P  ++  + +          +   EL  P     +     +++   A     +  
Sbjct: 48  VASLQPHVVLMDLKMRRTGG-LEATRSLMELESPPKVIAMTAMDVDDLVVQAVAAGAHSF 106

Query: 133 LTFDVARI--RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
           L+ D A +     + ++     +   + L  I   +   A           +   LT RE
Sbjct: 107 LSKDEAPLTFHQSVRVVASGNTLFSPEALRRIVSESEGTAGSTPVVRPDLSR---LTERE 163

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E LT ++EG+++ +I   L +   TV +++++I  K   + R  A   A R  +V
Sbjct: 164 REVLTVLAEGESNADIGRRLFLGETTVKSHVSAIFEKLGVRNRVEAALQAYRAGLV 219


>gi|294102345|ref|YP_003554203.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617325|gb|ADE57479.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 231

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 49/102 (48%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G + L    R   R++ +    +A      F        + +ELT RE E L W+++G +
Sbjct: 109 GRVELLSAIRSANRNQPYVDPQVAGKLLTSFSRRKEENDQLYELTPREKEILYWLAQGLS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + E+A  + +S  TV N+++ +++K   + R+ A   A R  
Sbjct: 169 NSEVASKMVLSEKTVKNHVSHVLKKLDLRDRTQAAILAWRIG 210


>gi|226226404|ref|YP_002760510.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089595|dbj|BAH38040.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 209

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 85/224 (37%), Gaps = 30/224 (13%)

Query: 32  LLARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +  R++ +D        + AL       + +G +       DL++   L  +V  D    
Sbjct: 4   MTIRILLVDDHAILREGLAALLNGVDGMQVIGQAGDGATAIDLYRN-LLPDVVICD---- 58

Query: 86  LVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            +R + +   +    +         +    + T  E         + Y     + A++  
Sbjct: 59  -LRMVPMDGTEVTSTIRAEFPAARVILLTTYDTDEEVFRGLRAGASSYLLKDVEPAQLID 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  ++   + I          +AA  A    S          LT R++E L  ++EG++
Sbjct: 118 TVHAVYAGRKAIDPS-------IAAKLAEHVASD--------ALTARQLEVLRSLAEGRS 162

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV  +I +I++K   + R+ A+   ++  ++
Sbjct: 163 NIEIANTLYISEGTVKAHIKAILQKLGARDRTQAVTIGIKRGLI 206


>gi|312876261|ref|ZP_07736247.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796907|gb|EFR13250.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 215

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 21/201 (10%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV----RCMALSEKDKYYNVLQRPTELFC 110
            +   +F +V      ++ ++ +   +   D+V    R   +   +  +N+  +   +  
Sbjct: 22  ILELENFEVVSLCTNAKEAIEFLEKGN--ADVVLMDIRMPVMDGIEGTFNIKTKFPNVKV 79

Query: 111 PVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
            +  T  E       +    + Y   + D   I   +  +     +  R+       +A 
Sbjct: 80  IILTTFCEEDYIKKSLSFGADGYILKSSDAQHIIDTIYAVLDGKVVFDRE-------IAL 132

Query: 168 YQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           + +N  K     +  +      ELT RE++ +  I++G ++ EIA +L IS  TV NYI+
Sbjct: 133 FISNTLKKEASSFSGNVNVLKNELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYIS 192

Query: 223 SIMRKTATKTRSGAIAYAVRN 243
           SI++K   + R+    Y  +N
Sbjct: 193 SILQKLQLQNRTQIAIYYYKN 213


>gi|299531690|ref|ZP_07045095.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
 gi|298720406|gb|EFI61358.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
          Length = 228

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT RE++ L  I++GKT+ EI+  L IS  TV  ++ +I  K   +TR+ A+ YA+
Sbjct: 164 KFESLTEREIDILKLIAQGKTTQEISSYLEISPLTVATHVKNIYGKMQVRTRAQAVRYAM 223

Query: 242 RNNIV 246
              I+
Sbjct: 224 LTGII 228


>gi|331699960|ref|YP_004336199.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954649|gb|AEA28346.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 223

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 59/162 (36%), Gaps = 7/162 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR    S  D    + +R  E   +   V+              + Y         +   
Sbjct: 64  VRMQGASGLDLCRTLRERDPEAKVVLLSVYDDEQYLFQALRAGASGYLLKKISGEELVRQ 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L L      +I       +   A   A   +S +   G    LT RE E L+ +  G ++
Sbjct: 124 LELAHTGTTVIDAS----LAGRAVDTAARLQSDEFWPGARQGLTHRESEVLSLMVTGLSN 179

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L +S  TV +++ SI RK     R+ A+A A+R  I
Sbjct: 180 RGIATRLVVSDETVKSHLRSIYRKLGVGDRTAAVATALREGI 221


>gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 232

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 17/180 (9%)

Query: 83  PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCSLT 134
           P  ++  + + + D Y     + +       PV          + I       + Y S  
Sbjct: 51  PELVISDIMMPQVDGYQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKP 110

Query: 135 FDVARIRIGLMLLFPKGRIILRD-----RLWEIGL----LAAYQANMFKSYDVHWGKDFE 185
           FD   +   +  L  + R  L+      RL EI      L                   +
Sbjct: 111 FDPEELEALIKSLIERRRQSLQATSENARLEEIARDIRELKQQVGQQNTFTTTPPPIKVD 170

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ +
Sbjct: 171 LTPREQSVLDLVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230


>gi|328882017|emb|CCA55256.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 237

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           +   + +      V +I   + ++     I+    L  +         +           
Sbjct: 116 SAGASGFVLKRLPVRQIAEAVRVVAAGEAILFPATLRRMVA-------VRPLDSAAALPR 168

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LTGRE E L  ++ G ++ EIA  L +S  TV  ++ +++ K   + R+ A+  A  +
Sbjct: 169 AALTGREEEVLRLMATGLSNPEIAESLTVSLETVKTHVGNVLTKLGAQNRTHAVVIAYES 228

Query: 244 NIV 246
            +V
Sbjct: 229 GLV 231


>gi|229115351|ref|ZP_04244759.1| Two-component protein Kinase [Bacillus cereus Rock1-3]
 gi|228668071|gb|EEL23505.1| Two-component protein Kinase [Bacillus cereus Rock1-3]
          Length = 592

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 91/252 (36%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLSTLLDRYEDIN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117
             +V      +Q +D +     P  ++  + + + D       + Q+   +   +F T  
Sbjct: 407 --VVGLAEDGDQAID-LCGRLQPHVVLMDLDMQQMDGVEATKKIKQQWPHIRVLIFTTFQ 463

Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +    +       + +   + +   +   + L+   G +I +    +I      Q +   
Sbjct: 464 DTKQALDSLRNGADGFLLKSIETLELANTIRLIHGGGTLIDQGMSHKI----FEQFDEQN 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G   + IA  L +S  TV NY +S   K   + + 
Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|297565492|ref|YP_003684464.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296849941|gb|ADH62956.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 211

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 15/163 (9%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           +R   +        +  R  E+   V  T   +      ++     Y         +   
Sbjct: 57  LRMPGMGGTAATRAIRSRFPEVQVLVLTTYDTDTEIVRAIEAGAIGYLLKDVPREELYKA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++         + A     M    D        L+ RE+E L+ +++G ++
Sbjct: 117 IYASAHGESVLSPP------VAARLLGRMRAPSDE------SLSTRELEVLSLVAKGLSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  ++     K     R+ A+  A+   I+
Sbjct: 165 KEIARELKISEATVKTHLLHTFGKLGVDDRTAAVTVALERGIL 207


>gi|290963132|ref|YP_003494314.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260652658|emb|CBG75791.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 2/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  +        L     L    F      +       + +     
Sbjct: 50  EVVVMDIRMPEVDGIEATRLIGQDEDLAGVKVLVLTTFEEDELVVEALRAGASGFLGKGV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   + L+     ++        GL+A   A       V   +   LT RE E LT
Sbjct: 110 EPAHLLDAVRLVAAGEALLSPAATK--GLIARVLAAPSPGDLVDPRRLATLTPREREVLT 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G ++DEIA  L ++  TV  +    M K   + R+  +  A    +V
Sbjct: 168 LVGSGLSNDEIAERLFVTPVTVKTHANRAMTKLGARDRAQLVVIAYETGLV 218


>gi|317122209|ref|YP_004102212.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315592189|gb|ADU51485.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 280

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 6/164 (3%)

Query: 89  CMALSEKDK----YYNVLQRPT-ELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRI 142
            + +   +        + +RP   +     H   E I P        Y         +  
Sbjct: 113 DIGMPGMNGIEATRAILKERPETRVLILSMHDNEEYIFPILEAGAAGYVLKRSAATELVS 172

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L  +     I+  D   ++   AA +       +    +   LT RE E LT I++G T
Sbjct: 173 ALRAVVQGHTILHPDVAAKVVSGAARRQKGGGPQEGVPRRVDGLTERETEVLTLIAQGLT 232

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV  + ++IM K           YA+R+ ++
Sbjct: 233 NQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHGLI 276


>gi|317129617|ref|YP_004095899.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474565|gb|ADU31168.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 207

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  ELT RE E L  I +GKT+ +IA  L I   TV  +++ I+ K   + R+ A  YA 
Sbjct: 143 KHEELTNREREVLALIGQGKTNKDIAETLHIGIKTVKTHVSHILSKLEVEDRTQAAIYAN 202

Query: 242 RNNI 245
           +N +
Sbjct: 203 KNKL 206


>gi|150398334|ref|YP_001328801.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150029849|gb|ABR61966.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 246

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 24/239 (10%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
             LA +  +            L +  G   + +VR     E  L  +++  WP    +  
Sbjct: 8   QFLALLEEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLRLLLAGRWPEGWPQIY 67

Query: 91  ----------ALSEKDKYYNVLQRP----TELFCPVFHTLPENITPPA--GMDNRYCSLT 134
                      +          +           P    +   +      G+ + Y    
Sbjct: 68  IRKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMIEARNHGLFDGYI-FP 126

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDFELT 187
               R  +G + +  +   +    L     +A           +     ++    + ++T
Sbjct: 127 VHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMT 186

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L ++++G TS++I  +L IS +TV+ Y+  I  K   K R   +A A R  ++
Sbjct: 187 RREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVALAFRLGLI 245


>gi|92116611|ref|YP_576340.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799505|gb|ABE61880.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 201

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             +        L+ RE E L  ++EG  +  IA  LGIS +TV  ++A+++ K     R+
Sbjct: 128 PEETAASLPIHLSPREAEVLALLAEGAPNKVIARRLGISVHTVKFHVAALLVKLGAANRT 187

Query: 235 GAIAYAVRNNIV 246
            AIA A+R  +V
Sbjct: 188 DAIATAMRQGLV 199


>gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 231

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 71/210 (33%), Gaps = 31/210 (14%)

Query: 67  DLFQEQKLDSIVSSD------W-----PFDLVRCMALSEKDKY---YNVLQRPTELFCPV 112
           D  QE      V+S+      W     P  ++  + + + D Y     + + P     PV
Sbjct: 20  DYLQESGFSVQVASNALEGWEWMQMNTPDLVISDVMMPQVDGYQFLKQLREDPRFQALPV 79

Query: 113 FHTLPENITP-----PAGMDNRYCSLTFDVARIRIGLMLLFPKGR------------IIL 155
                + +T           + Y    FD   +   +  L  +                L
Sbjct: 80  VFLTAKGMTGDRIQGYHAGVDAYLPKPFDPDELVAIVENLLARRAAKTTTTGDDAETPDL 139

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            +   +I  + A                 +LT RE   L  ++EG  + EIA  L  S  
Sbjct: 140 AELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVAEGLMNKEIARRLETSVR 199

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 200 NVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|291483274|dbj|BAI84349.1| hypothetical protein BSNT_01381 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 220

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 8/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAYQA 170
           +   L E  +     D    ++   V  +  G M+L P+    +L +   E  L    + 
Sbjct: 90  IAEALEEGASGYLLKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGINEI 149

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              K          +LT RE+E L  +  G  + EIA  L I+  TV N++++I+ K A 
Sbjct: 150 EKPKEL-------LDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAV 202

Query: 231 KTRSGAIAYAVRNNI 245
           + R+ A  Y+VR  +
Sbjct: 203 RDRTQAAIYSVRYGV 217


>gi|239918654|ref|YP_002958212.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839861|gb|ACS31658.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 230

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 13/170 (7%)

Query: 87  VRCMALSEKDKYYNVLQRP---TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   +   +    +L+RP     +    F              + +         +   
Sbjct: 62  VRMPEMDGIEATRALLRRPDAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAPPEELLAA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTW 196
           +  +     +I          L  + A   +S  V   +  E       LT RE E L  
Sbjct: 122 IRTVHRGDAVIAPSTTRR---LLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVL 178

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  + EIA  L +S  TV  ++  ++ K   + R  A+  A R  +V
Sbjct: 179 MAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLV 228


>gi|269836276|ref|YP_003318504.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785539|gb|ACZ37682.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 223

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 7/159 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +    + ++  E+   +     ++             Y       A +   L  L
Sbjct: 61  GIDGIEATRRIKRQLPEVRVVMLTVYDDHERLFQSIKAGAQGYLIKNIRSAELLDQLRGL 120

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                 I R     +      +    +        D  L+ REVE L  ++   ++ EIA
Sbjct: 121 ARGEAAISR----RMAARILEEFARLERQAEILEPDGGLSPREVEVLELVALRLSNKEIA 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS +TV N++ +I+ K    +R  A AYAV + ++
Sbjct: 177 ARLSISEHTVKNHLKNILAKLQLSSRRQAAAYAVAHGLI 215


>gi|21224033|ref|NP_629812.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7801256|emb|CAB91120.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 237

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D  +  L   V  +  G  LL P+             L+A +   
Sbjct: 102 VYDALAAGAGGFLLKDATFPELLHAVRVVAGGNALLSPEITK---------RLIAEFVHA 152

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 V    D  LT RE E LT I+ G ++ EIA  L I+ +TV  +I  +  K   +
Sbjct: 153 RGSRLPVPAAGD--LTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELR 210

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    +V
Sbjct: 211 DRAQAVIVAYELGLV 225


>gi|302544568|ref|ZP_07296910.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462186|gb|EFL25279.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 240

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 10/158 (6%)

Query: 92  LSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           L          +RP   L   V     + I    G    Y + T     +   +  +   
Sbjct: 90  LRRSAALMAATERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDAIFRVSEG 149

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAV 208
             +           LA +  + F S D     +    LT RE E L  I+ G    EIA 
Sbjct: 150 DAVFSP-------RLAGFVLDAFASTDAPPVDEDMDRLTQREREVLRLIARGYAYKEIAK 202

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV +++++++RK     R     +A    +V
Sbjct: 203 QLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 240


>gi|13474495|ref|NP_106064.1| hypothetical protein mll5392 [Mesorhizobium loti MAFF303099]
 gi|14025249|dbj|BAB51850.1| mll5392 [Mesorhizobium loti MAFF303099]
          Length = 517

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 6/163 (3%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + + ++     +           PV  T    +   A         +  VA +  G 
Sbjct: 351 EAAQGIGVASAQGVHVGEIELR--GPPVGLTARVTMQLAAHASRSDILASRLVADLATGS 408

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH----WGKDFELTGREVECLTWISEG 200
            L F     I  D L E   L    +      D        +   LT RE E ++ I++G
Sbjct: 409 GLHFEDASRITLDDLDEPMALVRAMSEQHLEPDCRVRTKTTEPAVLTARESEVVSLIADG 468

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           K++  IA  L +S +TV  ++A+I+ K    +R+ A  ++VR+
Sbjct: 469 KSNAAIAAELRLSEHTVKRHVANILLKLDLPSRAAAAVFSVRH 511


>gi|312962962|ref|ZP_07777448.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311282731|gb|EFQ61326.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 833

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           + I   RL   GLL+  +  M          +  L+ RE+E L  I+ G ++ +IA  L 
Sbjct: 740 QAIRELRLRAPGLLS--ELGMEPQASTAGVVENPLSQRELEVLQLIALGSSNLQIADRLF 797

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IS +TV  +   I  K   + R+ A+A A    +
Sbjct: 798 ISLHTVKTHARRIHSKLGVERRTQAVAKAKTLGL 831


>gi|311278134|ref|YP_003940365.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308747329|gb|ADO47081.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 217

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G  L+     ++  ++  E+ ++        +S      ++  LT RE E L  +  G T
Sbjct: 116 GSRLIEGVKAVLNGEQTAELSVMHPAMYAAEQSSG--EAENIPLTERECEILNELRCGAT 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + +IA  L IS NTV  ++ ++ RK + K R+ A+++A
Sbjct: 174 NMDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWA 211


>gi|182375406|emb|CAQ15951.1| vR protein [Pseudomonas fuscovaginae]
          Length = 239

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 17/232 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    ++      +W   +    + +G S  L       + Q   + + S++P       
Sbjct: 5   DECIELLSAMDARTWFQSLVLSVQKLGYSQVLYALKPNKEAQNSTARIMSNFPDAWRDLY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVF---HTLPENITPPAGMDNRY------CSLTFDVARIR 141
                     V+        P+                 D R        +L     + +
Sbjct: 65  DNENYSSIDPVVSHSFSSSLPILWEDKLYKTRREKEFAEDARRAGLSHGLTLPIHGPQGQ 124

Query: 142 IGLMLLFPKGRI------ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVEC 193
           +G++ L            +L+  +    +L  Y      S  +H        LT RE+E 
Sbjct: 125 VGMLSLSCAPMPQNEYLQVLQHSIAAASMLRDYAVTSGSSLFLHNSSSTAPHLTPRELEI 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L W    KT+ EI  IL ++  TV  +  +I RK    +R  A+A A++ ++
Sbjct: 185 LHWAWAEKTTWEIGKILSLAEPTVEFHFKNIRRKLNVSSRRLAVARAIQLDL 236


>gi|327472699|gb|EGF18126.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 210

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|297197302|ref|ZP_06914699.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|297146673|gb|EFH28280.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 228

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 8/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +R G  LL P     L +R        A +  
Sbjct: 92  VYAALTAGASGFLLKDVTPEHLVAAVRLVRSGDALLAPTITRRLIERF-------AQREE 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S DVH      LT RE+E L  ++ G ++ E+A  L +S  TV  +I  I+ K   +
Sbjct: 145 AVPSADVHRDLS-GLTPRELEVLRLLATGLSNAELAERLFLSPTTVKTHIGRILSKLELR 203

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A  + ++
Sbjct: 204 DRVQAVVLAYESGLI 218


>gi|163761077|ref|ZP_02168154.1| two component transcriptional regulator, LuxR family protein
           [Hoeflea phototrophica DFL-43]
 gi|162281628|gb|EDQ31922.1| two component transcriptional regulator, LuxR family protein
           [Hoeflea phototrophica DFL-43]
          Length = 223

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 4/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   +F      I         Y   +  +A I   ++ +   G  I       +  
Sbjct: 86  CEALVVSIFGDEGRVIEALRAGARGYVLKSGSLATIGKDVLSVIEGGSPISPQIARHLLA 145

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           + +  A    +         +LT RE E L  +++G    EI   LGIS  TV N+I +I
Sbjct: 146 MVSSGA----AGSSEGAPQIDLTNRETEILNAVAKGYKRREIGEKLGISTGTVGNHINNI 201

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K    + + AIA A R  ++
Sbjct: 202 YQKLNVNSNTEAIARATRMGLL 223


>gi|228925473|ref|ZP_04088567.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944022|ref|ZP_04106406.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815693|gb|EEM61930.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228834218|gb|EEM79761.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 214

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 78  VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V    P  ++  + +      +    V ++   +   +  T  ++      ++   + Y 
Sbjct: 39  VKELQPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 98

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +   I   ++ +   G ++ +D   +I  +   +            +  +LT REV
Sbjct: 99  LKDMETDAIAQAILTVHSGGAVLPQDITAQI--IKELKKTKVAVECTTPEQLAQLTEREV 156

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 157 DVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 210


>gi|33866798|ref|NP_898357.1| transcriptional regulator [Synechococcus sp. WH 8102]
 gi|33639399|emb|CAE08783.1| possible transcriptional regulator [Synechococcus sp. WH 8102]
          Length = 91

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 43/72 (59%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D     +  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R 
Sbjct: 3   SSDPSDPLNISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRV 62

Query: 235 GAIAYAVRNNIV 246
             + +A+ N  +
Sbjct: 63  ALLNWAMDNGKI 74


>gi|298247238|ref|ZP_06971043.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549897|gb|EFH83763.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 939

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 26/225 (11%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL------DSIVSSDWPFDLVRCMA 91
            +         +    + V  +  LL      Q   L       + V+  W    V  M 
Sbjct: 719 EVKLGDPLDSPLARERQNVAFARLLLAESQADQALNLLIPLVERATVTQRWNH--VLEMW 776

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L +   Y+ + ++   L                G    Y     D      GL+    + 
Sbjct: 777 LLQIQAYHMLQRQREALSLL-------AQAVHLGASEGYIRHFVDGGAAIAGLLSQLREQ 829

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----------ELTGREVECLTWISEGK 201
                D L+ +G L         +   H   +            L+ RE E L  ++ G 
Sbjct: 830 EHQEEDHLY-LGTLVRAFNQQPAAPPAHLESEPSSRLPQPLLDPLSAREQEVLRLLARGA 888

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +IA  L ++ +TV ++I++I+ K     R+ A+A A    ++
Sbjct: 889 SNQDIAEALVVATSTVKHHISNILSKLEATNRTQAVARARALGLL 933


>gi|256784889|ref|ZP_05523320.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 226

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D  +  L   V  +  G  LL P+             L+A +   
Sbjct: 91  VYDALAAGAGGFLLKDATFPELLHAVRVVAGGNALLSPEITK---------RLIAEFVHA 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 V    D  LT RE E LT I+ G ++ EIA  L I+ +TV  +I  +  K   +
Sbjct: 142 RGSRLPVPAAGD--LTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELR 199

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    +V
Sbjct: 200 DRAQAVIVAYELGLV 214


>gi|37223211|gb|AAQ90202.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 17/221 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
             ++ ++   D        +  + + +   ++L          K D  +  ++P    + 
Sbjct: 12  EKIINKIKTCDNNKDINQCLSEMAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKY 71

Query: 90  MALSEKDKYYNVLQRPTELFCP----VFHTLPENITPPAGMDNR-------YCSLTFDVA 138
              +   +Y  V+        P    VF         P  +            S     A
Sbjct: 72  YDDAGLLEYDPVVDYSKSHHSPINWNVFEKKTIKKESPNVIKEAQESGLITGFSFPIHTA 131

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVE 192
               G++      + I  D L+         +L +   N  K        D  LT RE E
Sbjct: 132 SNGFGMLSFAHSDKDIYTDSLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKE 191

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           CL W SEGK++ +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 192 CLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232


>gi|321313453|ref|YP_004205740.1| two-component response regulator YxjM [Bacillus subtilis BSn5]
 gi|320019727|gb|ADV94713.1| two-component response regulator (YxjM) [Bacillus subtilis BSn5]
          Length = 218

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214
           + ++     A   +  F++      ++     T RE+E L  ++ G  +++IA  L +S 
Sbjct: 126 EAIFRTVTAAKIISETFRAKQQPHPEELAEPFTKRELEVLQQMAYGLRNEDIAEKLFVSE 185

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  ++  I++K   + R+ A+ +A+RN IV
Sbjct: 186 STVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|37223217|gb|AAQ90206.1| LuxR [Aliivibrio fischeri]
          Length = 233

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++            +  +T+ V   ++LL         K D  +  ++P        
Sbjct: 14  IINKIKACRNNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWREYYD 73

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140
            +   KY  ++        P+   + EN        N              S     A  
Sbjct: 74  DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 133

Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
             G++      +    D L       I L+     + ++  ++   K + +LT RE ECL
Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            W  EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 194 AWACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|261418694|ref|YP_003252376.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765509|ref|YP_004131010.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375151|gb|ACX77894.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317110375|gb|ADU92867.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 550

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--------- 183
           + F V   R G++ +  K     ++    +  LAA  A M  S   H G D         
Sbjct: 425 VPFFVGDGRYGVLAVHIKKEREAKEAEVYMTALAAIGAMMI-SGKSHGGNDGTVNIDMLS 483

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  + +G ++ EI+  L IS +TV N+I +I +K     RS  IA   + 
Sbjct: 484 EQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 543

Query: 244 N 244
           N
Sbjct: 544 N 544


>gi|21220598|ref|NP_626377.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|5689930|emb|CAB51968.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
          Length = 215

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++   L E   LA+ 
Sbjct: 82  HADVLEAVKSGATGYLLKSASTEELRDAVRRTAAGDPVFTPGLAGLV---LGEYRRLASE 138

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    + D    +   LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 139 PAPAAGTDDPGAPR---LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 196 QLHNRVELVRYAIERGL 212


>gi|92109527|ref|YP_571814.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91802609|gb|ABE64982.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 228

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 23/212 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +  L   + +        +      +      +F++  +  +     PF          +
Sbjct: 38  LAELRSRILFQRFPAQWLDRYSRKGY------VFRDPIIQHLFHERAPFTWHEGYESCPQ 91

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
            +   +++                     G+ + Y  +        I  +     G + +
Sbjct: 92  RRNVRLIR---------------GEAAEFGLRDGY-VVPISTIDGEIASLSFGGPGTLPV 135

Query: 156 RDRLWEIGLLAAYQ-ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
              L  +   A+Y                  LT RE +CL W  EGKT+ E + ILGISR
Sbjct: 136 SADLSVLNFAASYALGRHLHRIATWQRVSSNLTAREWDCLLWAGEGKTNWETSAILGISR 195

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  +I +   K    +++ AIA A+R  ++
Sbjct: 196 STVTKHIMAARAKLGAVSKAHAIATAIRTKLL 227


>gi|153004251|ref|YP_001378576.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027824|gb|ABS25592.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 212

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 2/141 (1%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           TE+     H   + +        R   L  D AR  +  +    K    +  R  E    
Sbjct: 72  TEIILLTVHDSDQLLGQALDAGARGYVLKEDAARHLVDAIDALSKHAPYVPSRAAERP-- 129

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               A    +     G+   LT RE E L  +++G ++ E+A  L IS  TV  + A++M
Sbjct: 130 GNAAAQERNTVVSRGGRVTSLTQREREVLRLLAQGDSNREVAGQLSISAKTVETHRANVM 189

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    +    + YA+RN IV
Sbjct: 190 RKLGASSIVDLVHYAIRNGIV 210


>gi|17230648|ref|NP_487196.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132251|dbj|BAB74855.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   YC       ++ + L  +             EI   ++ +++  +  + ++ 
Sbjct: 97  LIEAGAQGYCLKGIIAEKLVLALRSVAAGASWWDETATREIR--SSIESSQSQPPEQNFP 154

Query: 182 K-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K D  LTGRE+E L  +++GKT+ EIA +L I+  TV  ++ +I+ K     R  A+  A
Sbjct: 155 KSDHPLTGRELEILALLAKGKTNQEIATVLYITPGTVRVHVHAILHKLEVSDRHQAVVVA 214

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 215 LQKRLI 220


>gi|283786604|ref|YP_003366469.1| quorum sensing transcriptional regulator CroR [Citrobacter
           rodentium ICC168]
 gi|282950058|emb|CBG89690.1| quorum sensing transcriptional regulator CroR [Citrobacter
           rodentium ICC168]
          Length = 230

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWIS 198
           + + ++     G  +  +R + +  L          Y  VH  K+  L+ RE + L W+S
Sbjct: 121 VVLSIISHKDSGIDMTANRSYFMHFLVQLHQKTLNLYSKVHQKKNVFLSPRERQILKWVS 180

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  E+++IL I+  TV  ++++ M+K        A+   +   ++
Sbjct: 181 AGKTYAEVSLILSITERTVKFHMSNAMKKLGVNNARHAVKLGMELRLL 228


>gi|323356651|ref|YP_004223047.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323273022|dbj|BAJ73167.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 221

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 2/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V SD        + L+        L     L    F      +       + +     
Sbjct: 49  DVVVSDIRMPRRDGIELTALVCDDPALTETRVLILTTFEEDDYVVAALRAGASGFIGKGA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   I   ++ +   G ++         L+  Y      +          LT RE E L 
Sbjct: 109 EPEDIVRAVLSVHEGGALLSPAATR--ALIEKYVRTTGAADVPSPVSLDALTDREREVLL 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G+++DEIA  L IS +T   ++ + M K     R+  +  A  + ++
Sbjct: 167 HVARGRSNDEIAAHLYISPHTAKTHVKNTMLKLGAHDRAQLVIAAYESGLL 217


>gi|225593182|gb|ACN96099.1| two-component response regulator [Fischerella sp. MV11]
          Length = 221

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L+ I++GKT+ EIA  L I+  TV  ++ +I+ K   + R+ A+  A++  
Sbjct: 159 PLTQREQEILSLIAQGKTNQEIAEALYITTGTVRVHVHTILHKLEVRDRTQAVIVAMQAG 218

Query: 245 IV 246
           ++
Sbjct: 219 LI 220


>gi|13475096|ref|NP_106660.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025847|dbj|BAB52446.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 241

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 22/185 (11%)

Query: 59  SHFLLVRWDLFQEQKLDSIV----SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           SH+L       Q +++D ++     S+ PF     +       +  +  R  +LF     
Sbjct: 62  SHYL-----RHQYERIDPVIEWARCSECPFQWGPGL------GHAGISTRQQQLFDEAAE 110

Query: 115 TLPENITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
                      +D R    ++TF   R+    + +  +    L     EI  +  +    
Sbjct: 111 FGICCGLTIPLVDRRGGVAAMTFAADRLDPTFLRVAEQYEQAL-----EIMAMCFHIGVR 165

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K           LT RE ECL W ++GK++ EI  ILGI   T   ++ +  +K   +T
Sbjct: 166 RKLARGLAVDGVSLTPREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRT 225

Query: 233 RSGAI 237
           ++ A+
Sbjct: 226 KNQAV 230


>gi|311070407|ref|YP_003975330.1| two-component response regulator YxjM [Bacillus atrophaeus 1942]
 gi|310870924|gb|ADP34399.1| two-component response regulator (YxjM) [Bacillus atrophaeus 1942]
          Length = 218

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             T RE+E L  ++ G  ++EIA  L +S +TV  ++  I++K   + R+ A+ +A+RN 
Sbjct: 156 PFTKRELEVLQQMAYGLRNEEIADKLFVSESTVKTHVHRILQKCEAQDRTQAVVFAIRNG 215

Query: 245 IV 246
           IV
Sbjct: 216 IV 217


>gi|315505714|ref|YP_004084601.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315412333|gb|ADU10450.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 221

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 63/176 (35%), Gaps = 3/176 (1%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++    +V  D     +  +  + +    +    P  L    F T  +         + +
Sbjct: 45  DRVEADVVVMDLRMPTMDGVEATRRICAGSAGGGPRVLVLTTFDTEADAFAALRAGASGF 104

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   + ++     ++         LL  +   +  +      +  +LT RE
Sbjct: 105 LLKNVPPEELMAAIRVVAQGDSVVAPSITRR--LLDRFAGQLGPAPTADP-RLAQLTDRE 161

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  +++G ++ EIA  + ++  TV  ++  I+ K   + R  A+  A  + +V
Sbjct: 162 REVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESGLV 217


>gi|315500523|ref|YP_004089325.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
 gi|315418535|gb|ADU15174.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
          Length = 218

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 8/156 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-DNRYCSLTFDVARIRIGLMLL 147
            M   E  +    L     +     H LP  +          Y      +  ++  ++ +
Sbjct: 63  DMDGLEATRRIAALGLAARVLMLTLHDLPAYVREALAAGAAGYVLKDTAIDDLQAAIVRV 122

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                 +  D       L +      +  +        LTGRE E +  I+EG T+ EI 
Sbjct: 123 AQGQTALPLD-------LVSAAMRAPEPVERDPTALSSLTGREREIVHLIAEGMTNKEIG 175

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LGIS  TV  ++  ++ K     R+ A   A R+
Sbjct: 176 RSLGISPATVKAHVERLIAKLGVTDRTQAAVLASRH 211


>gi|296138093|ref|YP_003645336.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026227|gb|ADG76997.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 222

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 72/224 (32%), Gaps = 20/224 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            D   R++ +D    W   +    E  G +    V            I  +  P  ++  
Sbjct: 10  DDAAIRVLVVDDHPMWRDAVARDLEARGFT----VAGTADSVAAAGRIAGAVQPTVVLMD 65

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           M+L + D               V    P+         +    +   V     G ++   
Sbjct: 66  MSLPDGDGAAG--------TTLVLQHAPQAAVLILSASDEREDVVEAVKAGACGYLVKSA 117

Query: 150 KGRIILRDR--------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
               ++           ++  GL         +          +LT RE E L  +++G 
Sbjct: 118 SAEELVAAVRATAAHQPVFTPGLAGLVLGEFRRMAAEPEPAGPQLTPRETEVLRLVAKGL 177

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ +IA  L +S  TV N++ + +RK     R     YA+ N +
Sbjct: 178 SAKQIATRLHLSHRTVENHVQATLRKLQLGNRVELARYALENGL 221


>gi|218509884|ref|ZP_03507762.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli Brasil 5]
          Length = 373

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLD---------------CTVSWTMRMYALTEYV 56
           +N  D  R   V+ + +RSDL  R+I +                  +    R+    E  
Sbjct: 1   MNGADPLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIYRVSGSGLPAKQRLVCELENW 60

Query: 57  GASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           G+S+  F     D + +  LD I  S  P        LS    +      P + F P   
Sbjct: 61  GSSNAGFGKAFTDAYGDILLDHIEKSLLP--------LSWAGAHDRAAPGPAD-FAPFMT 111

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173
            L + I P +G      +    +  +  G +L          D + E+ G       ++ 
Sbjct: 112 RLRDGILPFSG-----LAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLL 166

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              +        L+ RE+ CL    +G+ S+EIA 
Sbjct: 167 SLDERRTAAAEALSEREIACLQLAGDGRISEEIAR 201


>gi|186681582|ref|YP_001864778.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464034|gb|ACC79835.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 226

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L W+++G +++EIA  L ++  TV  ++ SI  K    +R+ AI  A++
Sbjct: 161 EVHLTEREQEVLYWLTQGASNEEIAKHLYVTVATVKAHLTSIFEKLKVTSRTQAIVAALK 220

Query: 243 NNIV 246
             +V
Sbjct: 221 LGLV 224


>gi|298244102|ref|ZP_06967908.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551583|gb|EFH85448.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 216

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 15/137 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     +     L   +  I  G   L P  + ++               +
Sbjct: 91  VFQALRAGASGYMLKEAADTELITALHVILSGQFYLSPAAQSVM-------------VGD 137

Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             +       KD    LT RE E L  ++EG T+++IA  L IS  TV+ +   IM K  
Sbjct: 138 YLQRSKTGEEKDSYSSLTEREREILKLVAEGFTNNQIAERLVISPKTVDTHRTHIMDKLN 197

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R+  + YA+R  ++
Sbjct: 198 LHSRAELVKYAMRRGLL 214


>gi|54025090|ref|YP_119332.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016598|dbj|BAD57968.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 219

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   V  +  G  ++ PK    L DRL     +A   A 
Sbjct: 91  VLGALRAGASGFLLKDTPPEDLVSAVRSVAAGDAVVSPKVTKRLLDRL-----IADDPAG 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M  +  +       LT RE E L  I+ G+++ EIA  L +S  TV  ++  ++ K   +
Sbjct: 146 MRDAAVLDV-----LTAREREVLEQIAAGRSNAEIAAELFLSEATVKTHVGRVLTKLGLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 201 DRVQAVVLAYETGLV 215


>gi|324994067|gb|EGC25981.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|327459273|gb|EGF05619.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327490491|gb|EGF22272.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
          Length = 210

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|324324220|gb|ADY19480.1| two component LuxR family transcriptional regulator [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 218

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 78  VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V    P  ++  + +      +    V ++   +   +  T  ++      ++   + Y 
Sbjct: 43  VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +   I   ++ +   G ++ +D   +I  +   +            +  +LT REV
Sbjct: 103 LKDMETDAIAQAILTVHSGGAVLPQDITAQI--IKELKKTKVAVECTTPEQLAQLTEREV 160

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 161 DVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 214


>gi|319442855|ref|ZP_07992011.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 251

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              D   G    LT RE E L  ++ G ++ EIA  L +S  TV  ++  ++ KT ++ R
Sbjct: 170 PGPDDDLGLVDPLTPREREILVLMATGASNQEIAARLFVSLPTVKTHVGRVLAKTGSRDR 229

Query: 234 SGAIAYAVRNNIV 246
             A+ +A R+ +V
Sbjct: 230 VHAVLFAFRHGLV 242


>gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0205]
          Length = 243

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 10/186 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++ L  +V SD     +    L  K +    L     +F        + I       + Y
Sbjct: 57  QELLPDVVISDVMMPRLDGYGLLRKLREDERLGGTPVIFLTAKGMTADRIEGFQAGCDDY 116

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKD--- 183
               FD   +   +  +  +   +L +       +IG +A     +         K    
Sbjct: 117 IPKPFDPDELVARVHNVVKRQERLLTEAARFADADIGQMAKQITEIRSLLATGGSKQPTA 176

Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               E T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA
Sbjct: 177 AVKHEFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTELVRYA 236

Query: 241 VRNNIV 246
           + N +V
Sbjct: 237 LENGLV 242


>gi|294815678|ref|ZP_06774321.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064]
 gi|326444025|ref|ZP_08218759.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328277|gb|EFG09920.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 221

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 45/81 (55%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A            H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I 
Sbjct: 140 ARLGHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIA 199

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK  T  R+G +A A+R  I+
Sbjct: 200 RKLGTGDRAGMVAVALRTGII 220


>gi|1498492|gb|AAC45136.1| ORF1; homolog to response regulator of a putative signal
           transduction system [Streptomyces lividans]
          Length = 225

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPT------ELFCPVFHTLPENITPPAGMDNR 129
            +V    P  ++  + + E D      +  T       +       L + +         
Sbjct: 43  EVVLRTRPDIVLMDIRMPELDGLEATRRILTGAPDAPRVIMLTTFDLDDLVYAALAAGAS 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTG 188
              L        +  + L   G  +L   +    L+  +      + +    +D + LT 
Sbjct: 103 GFLLKDVTPEHLVAAVRLVRTGDALLAPAITRR-LVERHAHTTPPAPNTTAHRDLQTLTP 161

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  +++G ++ E+A  L +S  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 162 RELEVLQLLAQGLSNAELAERLYLSETTVKTHVGRILAKLQLRDRVQAVVTAYETGLV 219


>gi|294812171|ref|ZP_06770814.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440673|ref|ZP_08215407.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324770|gb|EFG06413.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
           27064]
          Length = 234

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++   L E   LA  
Sbjct: 95  HADVLEAVKSGATGYLLKSASTEELIDAVRRTADGDAVFTPGLAGLV---LGEYRRLAGE 151

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A      +    +   LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 152 PAPTPGGPEPKAPR---LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 208

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 209 QLHNRVELVRYAIERGL 225


>gi|171909840|ref|ZP_02925310.1| NarL subfamily protein [Verrucomicrobium spinosum DSM 4136]
          Length = 216

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  ++ G+++ EIA  L IS  TV  ++ S+  K    +R+ AIA A R
Sbjct: 151 NEPLTRREQEVLELLARGRSNKEIASTLSISEPTVKTHLRSLFGKLDVLSRTEAIAVASR 210

Query: 243 NNIV 246
             +V
Sbjct: 211 KGLV 214


>gi|163760010|ref|ZP_02167094.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162282968|gb|EDQ33255.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 247

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 87/237 (36%), Gaps = 28/237 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--- 91
              P +   +   R+  +   +G   F LVR    +   +D I++  WP D     A   
Sbjct: 13  EKDPSEGAATMRERLSKVVAGLGFDFFKLVRQAGPESGAVDMILAEQWPSDWPELYAKRK 72

Query: 92  -------------LSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--GMDNRYCSLTFD 136
                             ++   ++   E   P +  +   +      G+++ Y      
Sbjct: 73  YATIDPTLRYLGHSQGGFRWREPMEAYQE--DPHYKRMERMMADARRFGLEDGY-VFPVH 129

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLA-----AYQANMFKSYDVHWGKD--FELTGR 189
             R  +G + +      +LR  +  +  LA          +  +      +    ++T R
Sbjct: 130 GRRGLVGYLTIAGGYVELLRSEMAMMDALAKKAFWELVELLDPAAHERLNRPVTMQMTKR 189

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ L ++  G TS+E+   LG+S +TV+ Y+  I  K   K R   +A A R  ++
Sbjct: 190 EMQTLEYLGCGMTSNEMGTALGLSAHTVDWYMNGIQEKLHAKNRHHVVAIAFRLGLI 246


>gi|116625456|ref|YP_827612.1| LuxR family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228618|gb|ABJ87327.1| transcriptional regulator, LuxR family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 178

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++EG  +  IA  LGIS +TV  ++A I+ K    TR+ A+   +R  
Sbjct: 115 PLTPRELEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNAGTRTEAVTLGIRKG 174

Query: 245 IV 246
           ++
Sbjct: 175 LI 176


>gi|23006062|ref|ZP_00048562.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 195

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 64/175 (36%), Gaps = 4/175 (2%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           + L  +V  D     +  +  + +            +    F           G  + + 
Sbjct: 19  EHLPDVVLMDIRMPGLDGLEATRRIVADRAASHVHVVVVTTFELDEYVTDAIRGGASGFL 78

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +   +   + +      ++          L +  A+  ++     G + ELT RE 
Sbjct: 79  VKDTEPVDLVRAVRVAARGDALLSPTVTRR---LLSRVADATRAVGPVRGVE-ELTPRER 134

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G +++EIA  L +S +TV  +++ +M K   + R+  +  A  + +V
Sbjct: 135 EVLVEVAGGLSNEEIAGSLFLSESTVKTHVSRVMAKLGARDRAQLVVAAYESGVV 189


>gi|302544315|ref|ZP_07296657.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461933|gb|EFL25026.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 229

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +LT RE E LT ++ GK + EIA  L I + TV  Y++ I+ K    +R+ A  
Sbjct: 140 EPSGPEQLTERETEVLTMLARGKANKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAV 199

Query: 239 YAVRNNIV 246
           YAV++ +V
Sbjct: 200 YAVQSGLV 207


>gi|73541423|ref|YP_295943.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72118836|gb|AAZ61099.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 257

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 5/240 (2%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+N  +  +    T  +  +     + AR+  +   + +T      T     +H  LV  
Sbjct: 22  QMNPTITNKKPALTGNLLLVGHEKRMRARLCAILSDLDYTADALTYTCCPEEAHAQLVER 81

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             F    +DS ++     DL+  +   +      V+  P      V   L    +     
Sbjct: 82  P-FDMVLVDSSLAHGNGIDLIGALHARDPRMPIVVISDPAA-EADVMSALRAGASGYLLK 139

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           +     L+  +     G M + P    I R  L  +     + A    +          L
Sbjct: 140 ERDDTELSVSLRSALRGGMPIDP---FIARQVLRSLVPADPHAACSPPAGCAGPEARSPL 196

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  I  G T+ EIA  L +S  T+ +++ +I +K   KTR+ A   A R  ++
Sbjct: 197 STRELEILRCIDRGATNREIAAALSLSTLTIESHVKNIHKKLGVKTRTQATFEARRYGLL 256


>gi|300716150|ref|YP_003740953.1| regulatory protein [Erwinia billingiae Eb661]
 gi|299061986|emb|CAX59102.1| Regulatory protein [Erwinia billingiae Eb661]
          Length = 240

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L W +EGKTS EI++IL IS NTVN +   + ++     ++   +YA  
Sbjct: 177 NMELSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQVASYAAA 236

Query: 243 NNIV 246
             ++
Sbjct: 237 IGLL 240


>gi|294631853|ref|ZP_06710413.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|292835186|gb|EFF93535.1| two-component system, regulatory protein [Streptomyces sp. e14]
          Length = 229

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 8/134 (5%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L          D     +   V  +  G   L P  +  L + L E           
Sbjct: 99  FPALRAGARGYLTKDAGGDEIVRAVESVLSGEAGLAPSIQRRLLEHLSEP-------EPE 151

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             +       D  LT RE E +  I+EG ++ EIA  L +S  TV  +I ++  KT  K 
Sbjct: 152 PWATPADQAPD-GLTARECEVVVLIAEGLSNQEIARRLHVSTATVKTHINNLFAKTGLKD 210

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA    +V
Sbjct: 211 RAQAVRYAYAKGLV 224


>gi|289669083|ref|ZP_06490158.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 213

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L  ++ G ++ +I   L IS  TV  ++ +I+ K   + R+ A+  A+R
Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALR 205

Query: 243 NNIV 246
             I+
Sbjct: 206 RGIL 209


>gi|152985537|ref|YP_001348746.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960695|gb|ABR82720.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 237

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 74/234 (31%), Gaps = 18/234 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R   L  +  +     +      +    G   F       F          S++P +   
Sbjct: 5   REGYLEILSRITTEEEFFSLALEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKS 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARI 140
                +      +++     + P+     +              G+ + + S+       
Sbjct: 65  RYISEDYTSIDPIVRHGLLEYMPLIWNGEDFQENRFFWEEALHHGIRHGW-SIPVRGKYG 123

Query: 141 RIGLMLLFPKGRIILRDR--------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            I +  L      I            LW   +L A   ++     V    +  LT RE E
Sbjct: 124 LISMFSLVRSAESIAAAEILEKESFLLWITSMLQATFGDLLAPRIVPES-NVRLTARETE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W + GKT  EI +IL I + TV  +I + MRK  +  ++ A   A    ++
Sbjct: 183 MLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236


>gi|41410415|ref|NP_963251.1| hypothetical protein MAP4317c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41399249|gb|AAS06867.1| hypothetical protein MAP_4317c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 218

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 70/211 (33%), Gaps = 11/211 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  +        F++V      ++   +I +   P  +V  + +   D  
Sbjct: 13  VDDQDLVRSGLRRILRR--KDGFVIVAECADGDEVPAAIAAHR-PDVVVMDLRMRRVDGI 69

Query: 98  --YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                +  RP  L    F+               +         +   +  +      + 
Sbjct: 70  EATRRLGGRPPVLALTTFNEDELLSGALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLD 129

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                 +  L  Y      +         ELT RE + LT I +G ++ EIA  L IS  
Sbjct: 130 PAVTSRV--LTTY---RKAAPGPRGAAIAELTTRERDVLTLIGKGLSNSEIADELCISGV 184

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV ++I  I  K   + R+ AI YA  N IV
Sbjct: 185 TVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215


>gi|160896554|ref|YP_001562136.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160362138|gb|ABX33751.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 223

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 1/136 (0%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GL 164
             +   V     +           Y   T D   +   L        ++  + + ++   
Sbjct: 82  RVVMLTVSEDGQDLAAALRNGAQGYLLKTIDGDLLSEALRRAARGEPVVSPEMMGKLVAA 141

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             +  A   ++ +        L+ RE E L  I+ G ++ EIA  L I+  TV  ++  I
Sbjct: 142 FQSQGAPEPQAPEPDEAPASPLSPREEEVLVQIARGASNKEIARTLDIAETTVKIHVQHI 201

Query: 225 MRKTATKTRSGAIAYA 240
           +RK    +R  A  YA
Sbjct: 202 LRKLGLSSRVQAAVYA 217


>gi|297156704|gb|ADI06416.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 195

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAY 168
           F  L          D     +   +  +  G   L PK +  L +RL          A  
Sbjct: 46  FPALKAGARGYVTKDADAEEIARAIEDVMSGQAGLSPKVQRRLLERLVASTADTPDTADG 105

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    +  V       LT RE E LT ++EG ++ EIA  L I   TV  +I     K 
Sbjct: 106 TAAKTGAGAVPGPLPDGLTPREAEVLTLVAEGLSNAEIARRLHIGPATVKTHI----AKA 161

Query: 229 ATKTRSGAIAYAVRNNI 245
             + R+ A+ YA R+ I
Sbjct: 162 GVRDRAQAVRYAYRSGI 178


>gi|126641440|ref|YP_001084424.1| putative two-component response regulator protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 257

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 194 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 248


>gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 231

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 31/210 (14%)

Query: 67  DLFQEQKLDSIVSSD----W-------PFDLVRCMALSEKDKY---YNVLQRPTELFCPV 112
           D  QE      V+S+    W       P  ++  + + + D Y     + + P     PV
Sbjct: 20  DYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVDGYQFLKQLREDPRFQSLPV 79

Query: 113 FHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE------ 161
                + +T           + Y    FD   +   +  L  +          E      
Sbjct: 80  VFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENLLTRRNSKPPKTTEEGETPDI 139

Query: 162 ------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                 I  + A                 +LT RE   L  ++EG  + EIA  L  S  
Sbjct: 140 AELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVAEGLMNKEIARRLETSVR 199

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 200 NVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|67922881|ref|ZP_00516379.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67855305|gb|EAM50566.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 221

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 14/171 (8%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVF--HTL-PENITPPAGMDNRYCSLTFD 136
           P  +V  + L   D       + ++  ++   +   HTL  E +   +   + YC     
Sbjct: 58  PDLVVMDIGLPRLDGIAATKQIKEQLPDIHVVMLTSHTLQTEVVAALSSGADAYCIKGAS 117

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLT 195
           + R       L            +    +A    +  K       ++  L + RE+E L 
Sbjct: 118 LER-------LLAAIEAAQDGATYLDPQIARLVLDNLKPPTSEPNQNISLLSERELEVLK 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I EGK++++IA  L +S NT+  ++  IM K A   R  A   A+R+ +V
Sbjct: 171 LIVEGKSNNQIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 221


>gi|297538563|ref|YP_003674332.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257910|gb|ADI29755.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 315

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           F+LT RE E L W ++GKTS +I  ILG S  TVN ++  +  K   +TR+ A A A
Sbjct: 251 FKLTSRESEVLYWATKGKTSRDIGDILGSSPRTVNKHLEHVFVKLGVETRTAAAALA 307


>gi|260466536|ref|ZP_05812725.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029685|gb|EEW30972.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 517

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 6/163 (3%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D  + + ++     +  +        P+  T    I   A         +  VA + +G 
Sbjct: 351 DAAQQIGVASAQGAH--VGEIETRGPPIGLTGRVTIQLAAHAGRGDILASRLVADLAVGS 408

Query: 145 MLLFPKGRIILRDRLWEIG--LLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEG 200
            L F +   +  D L E    +LA  + ++       V   +   LT RE E +  I++G
Sbjct: 409 GLHFVEAGRVSIDELDEPLALVLAMSEQHLEPACRPKVKAAEPASLTVRESEVVNLIADG 468

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           K++  IA  L +S +TV  ++A+I+ K    +R+ A A++VR+
Sbjct: 469 KSNAAIAAELRLSEHTVKRHVANILLKLDLPSRAAAAAFSVRH 511


>gi|229821303|ref|YP_002882829.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567216|gb|ACQ81067.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 231

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 2/142 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +    F      +       + +         +   +  +     +I         L
Sbjct: 88  PKIVILTTFDLDEYVLAAIKAGASGFLLKDTPPEEMLAAIRTVHAGDAVIAPSSTKR--L 145

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +    A +             LT RE E L  I+ G+T+ EI   L ++  TV  ++  I
Sbjct: 146 IEHLAAVLPDEQKTPTTALDALTEREREVLVLIARGRTNTEIGADLFVAEATVKTHVGRI 205

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+  A    +V
Sbjct: 206 LAKLGARDRVQAVVIAYETGLV 227


>gi|49081930|gb|AAT50365.1| PA1898 [synthetic construct]
          Length = 238

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 18/234 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R   L  +  +     +   +  +    G   F       F          S++P +   
Sbjct: 5   REGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKS 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARI 140
                +      +++     + P+     +              G+ + + S+       
Sbjct: 65  RYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGW-SIPVRGKYG 123

Query: 141 RIGLMLLFPKGRIILRDR--------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            I ++ L      I            LW   +L A   ++     V    +  LT RE E
Sbjct: 124 LISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPES-NVRLTARETE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W + GKT  EI +IL I + TV  +I + +RK  +  ++ A   A    ++
Sbjct: 183 MLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAVRKLNSSNKAEATMKAYAIGLL 236


>gi|321314554|ref|YP_004206841.1| two-component response regulator YfiJ [Bacillus subtilis BSn5]
 gi|320020828|gb|ADV95814.1| two-component response regulator (YfiJ) [Bacillus subtilis BSn5]
          Length = 220

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAY 168
             +   L E  +     D    ++   V  +  G M+L P+    +L +   E  L    
Sbjct: 88  ALIAEALEEGASGYLLKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGIN 147

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +            +  +LT RE+E L  +  G  + EIA  L I+  TV N++++I+ K 
Sbjct: 148 EIE-------KPNELLDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKL 200

Query: 229 ATKTRSGAIAYAVRNNI 245
           A + R+ A  Y+VR  +
Sbjct: 201 AVRDRTQAAIYSVRYGV 217


>gi|319652400|ref|ZP_08006516.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317395862|gb|EFV76584.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 210

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 68/183 (37%), Gaps = 27/183 (14%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +R  +    K   I+ S WP   +  +   + D Y             V   L   ++  
Sbjct: 55  IRMPVMDGLKAAKIIQSRWPHIKILMLTTFDDDNY-------------VMEALRIGVSGY 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              +    SL   +     G + +             E G+ A     + K  D     D
Sbjct: 102 ILKNGDTDSLLRSIRSALKGGLSI-------------EEGVAAKVVPQLMKQQDTK-EPD 147

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE   L  I EG +++EIA  L IS  TV N  + I+ K   + R+    YA+R+
Sbjct: 148 PSLTPRERAILKCIGEGLSNNEIAERLAISTGTVKNNTSQILTKLDLRDRTQLAIYAIRH 207

Query: 244 NIV 246
           N+V
Sbjct: 208 NLV 210


>gi|254385641|ref|ZP_05000964.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194344509|gb|EDX25475.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 224

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 3/145 (2%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           + P  +    F       +      + +       A +   +  +     ++        
Sbjct: 75  EHPKVIILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLAAIRSVHSGDAVVAPSTTRR- 133

Query: 163 GLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            LL  +   +  +      K+ E LT RE E +  +++G ++ EIA  L +S  TV  ++
Sbjct: 134 -LLDRFAPMLPTTTSEPRNKEIERLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHV 192

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             I+ K   + R   +  A    +V
Sbjct: 193 GRILTKLGLRDRVQVVVLAYETGLV 217


>gi|325695228|gb|EGD37129.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 210

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 21/203 (10%)

Query: 55  YVGASHFLLVRWDLFQEQKLD------SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
            +G   +L ++ D+ +  +            +D P  ++  + + E +          E 
Sbjct: 13  RLGLKSYLELQEDIAEVSEAVNGKEGVEQALADRPDVIIMDIVMPEMNG--------IEA 64

Query: 109 FCPVFHTLPEN--ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
              +    PE   +   + +DN       D      G ML       ILR          
Sbjct: 65  TLAILKEWPEAKILILTSYLDNEKIYPVLDAGAH--GYMLKTSSAEEILRAVKKVAKGEF 122

Query: 167 AYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + K  + H        +LT RE + L  +++G  +  IA  L IS  TV  ++++
Sbjct: 123 AIETEVSKKVEYHRNHIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSN 182

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K     R+ A+ YA ++++V
Sbjct: 183 ILSKLEVSDRTQAVVYAFQHHLV 205


>gi|325686912|gb|EGD28936.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 210

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|315221997|ref|ZP_07863908.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315188963|gb|EFU22667.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 210

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|332528409|ref|ZP_08404401.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332042088|gb|EGI78422.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 312

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L  + L AA       S     G    LT RE E L+W+++GKT+ +I  ILG+S  TVN
Sbjct: 226 LRHLPLAAAEAVARDPSQRRLSGA--ALTPRETEVLSWLAKGKTNRDIGDILGMSPRTVN 283

Query: 219 NYIASIMRKTATKTRS 234
            ++  I  K   +TR+
Sbjct: 284 KHLEHIFEKLGVETRT 299


>gi|222151813|ref|YP_002560973.1| two-component response regulator [Macrococcus caseolyticus
           JCSC5402]
 gi|222120942|dbj|BAH18277.1| two-component response regulator [Macrococcus caseolyticus
           JCSC5402]
          Length = 210

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHT 115
           + F ++       + L+ +  +  P  ++  + + E    +    +  +  ++   V  +
Sbjct: 27  ASFNVIADFNNGRELLEHLDETQLPDLIIMDLVMPELNGIEATRRIKAKYPDVKVLVLSS 86

Query: 116 LPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQA 170
             +       MD   + Y     +   +   +  +    +I   D +   + G+  A+  
Sbjct: 87  FIDEEHVLGVMDAGADGYEMKDSEPKALINTIKQIAAGEQIFHPDVMKVRKSGMNLAHLR 146

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N              L+ RE+E L  +SEG T+ EIA  L +S  TV  +++ I  K   
Sbjct: 147 N-------------PLSKRELEVLKAMSEGLTNKEIAEKLFVSEKTVKTHVSHIFAKLEV 193

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A  Y V+  ++
Sbjct: 194 GDRTQASMYGVKYKLI 209


>gi|327462458|gb|EGF08783.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|332362992|gb|EGJ40781.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332364570|gb|EGJ42339.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
 gi|332366354|gb|EGJ44105.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 210

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|197122287|ref|YP_002134238.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220917070|ref|YP_002492374.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196172136|gb|ACG73109.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
 gi|219954924|gb|ACL65308.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 218

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 13/135 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L   ++      +    L   V  +  G ++L P+   + R  + E G  A  +A+
Sbjct: 93  VRRLLKAGVSGYVLKKSAGAELANAVRAVHRGGLVLDPE---VARTAMEEAGPAAPGEAD 149

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            ++S          LT RE + L  ++EG+++ E+A +LGIS  T  ++   +M K    
Sbjct: 150 PYES----------LTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREHVMEKLGVH 199

Query: 232 TRSGAIAYAVRNNIV 246
            R+  + +A+R  ++
Sbjct: 200 NRTELVRFAIRKGVI 214


>gi|306817801|ref|ZP_07451542.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
 gi|304649450|gb|EFM46734.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 233

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G T+ E+A  L IS  TV  ++ +I+ K   + R  A+ +A  N +
Sbjct: 172 LTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAYENGL 231

Query: 246 V 246
           V
Sbjct: 232 V 232


>gi|227876856|ref|ZP_03994965.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977833|ref|ZP_06184790.1| response regulator protein VraR [Mobiluncus mulieris 28-1]
 gi|227842753|gb|EEJ52953.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269934003|gb|EEZ90580.1| response regulator protein VraR [Mobiluncus mulieris 28-1]
          Length = 233

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G T+ E+A  L IS  TV  ++ +I+ K   + R  A+ +A  N +
Sbjct: 172 LTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAYENGL 231

Query: 246 V 246
           V
Sbjct: 232 V 232


>gi|70728347|ref|YP_258096.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342646|gb|AAY90252.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           Pf-5]
          Length = 848

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGR 189
            +L  +  +    L+      + +   RL +  LLAA +A    S       ++  L+ R
Sbjct: 731 PALAQEALQAGQALVQRCNLPQALHELRLRQPLLLAAGEALQTPSSAGPLENRESLLSLR 790

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E++ L  I++G ++ +IA  L IS +TV  +   I  K   + R+ A+A A    +
Sbjct: 791 ELQVLQLIAQGCSNQQIAEQLFISLHTVKTHGRRIHSKLGVERRTQAVAKAQALGL 846


>gi|229165197|ref|ZP_04292990.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621]
 gi|228618295|gb|EEK75327.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621]
          Length = 214

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 8/174 (4%)

Query: 78  VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V    P  ++  + +      +    V ++   +   +  T  ++      ++   + Y 
Sbjct: 39  VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 98

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +   I   ++ +   G ++ +D   +I           +       K  +LT REV
Sbjct: 99  LKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK--QLTEREV 156

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  +
Sbjct: 157 DVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 210


>gi|125718640|ref|YP_001035773.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323350296|ref|ZP_08085961.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498557|gb|ABN45223.1| Two-component response transcriptional regulator (CheY-like
           receiver and HTH DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
 gi|322123481|gb|EFX95152.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|324991776|gb|EGC23708.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|325697714|gb|EGD39599.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327467206|gb|EGF12710.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 210

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|330468534|ref|YP_004406277.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328811505|gb|AEB45677.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
          Length = 229

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 10/171 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D   +  +   +   PV       F      +       + + S   
Sbjct: 58  PDVVLMDIRMPRMDG-VSATRAIVDARLPVRVLILTTFELDEYVVGGLRAGASGFLSKDV 116

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++    L    LL  +   +             LT RE E L 
Sbjct: 117 PAEDLITAIRTVAAGDAVVAPRILRR--LLDRFADVLPDPAASPPKALSTLTDREREVLG 174

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +S  T+  ++ +++ K   + R  A+  A  + +V
Sbjct: 175 QVARGLSNAEIARALSVSETTIKTHVGNVLTKLGLRDRVQAVVLAYESGLV 225


>gi|229009717|ref|ZP_04166941.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048]
 gi|228751597|gb|EEM01399.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048]
          Length = 214

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 78  VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V    P  ++  + +      +    V ++   +   +  T  ++      ++   + Y 
Sbjct: 39  VKQLQPEIILMDIRMPRMNGVEGTRLVREKFPYIKVLMLTTFSDSELIFEALEQGASGYL 98

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +   I   ++ ++  G ++ +D   +I           +       K  +LT REV
Sbjct: 99  LKDMETDAIAQAILTVYSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK--QLTEREV 156

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  +
Sbjct: 157 DVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 210


>gi|27382386|ref|NP_773915.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355557|dbj|BAC52540.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 123

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 42/78 (53%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A +         +D  LT RE++ L  ++EG ++  IA  LGIS +TV  ++ S++ K 
Sbjct: 44  AATIVARDPRSMPEDIALTQRELDVLALMAEGASNKMIARQLGISVHTVKFHVGSLLDKL 103

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+A+A R  ++
Sbjct: 104 DATGRTDAVAHAARRGVI 121


>gi|332358064|gb|EGJ35897.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 210

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|322386960|ref|ZP_08060584.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321269242|gb|EFX52178.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 210

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|319939666|ref|ZP_08014025.1| response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811255|gb|EFW07561.1| response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 210

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|300787274|ref|YP_003767565.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796788|gb|ADJ47163.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 213

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 7/155 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++   +    +     L    + T    +       + Y         +   +      
Sbjct: 63  GVAATARIVAEVPGCRVLILTTYDTDQNIVHAVEAGASGYLLKDATPEELAAAVRAAAGG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++          + A   N  +S      +   LT RE + L  ++ G T+ +I   L
Sbjct: 123 ETVLSP-------AIVAKLVNHLRSPAPAPAEPELLTPRETQVLRLVARGLTNADIGREL 175

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS  TV  ++  +  K     R+ A+  A++  +
Sbjct: 176 HISETTVKTHLVRMFAKLEVGDRTAAVTVAMQRGV 210


>gi|254819425|ref|ZP_05224426.1| two-component system response regulator [Mycobacterium
           intracellulare ATCC 13950]
          Length = 218

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 72/211 (34%), Gaps = 11/211 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  +        F++V      ++ + + V+   P  +V  + +   D  
Sbjct: 13  VDDQDLVRSGLRRILRR--KDGFVIVAECADGDE-VPAAVAEHRPDVVVMDLRMRRVDGI 69

Query: 98  --YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                +  RP  L    F+               +         +   +  +      + 
Sbjct: 70  EATRRLGGRPPVLALTTFNEDELLSGALRAGAAGFVLKDSSAEELIRAVRAVARGDSYLD 129

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                 +  L  Y      +         ELT RE++ LT I +G ++ EIA  L IS  
Sbjct: 130 PAVTSRV--LTTY---RKAAPGPRGAAIAELTTRELDVLTLIGQGLSNTEIAGKLCISGV 184

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV ++I  I  K   + R+ AI YA  N IV
Sbjct: 185 TVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215


>gi|313901612|ref|ZP_07835050.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468115|gb|EFR63591.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 272

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 3/159 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLL 147
            ++  +    +L++  E    +   H   E I P        Y         +   L  +
Sbjct: 110 GMNGIEATRAILKQRPETRVLILSMHDNEEYIFPILEAGAAGYVLKRSAATELVSALRAV 169

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                I+  D   ++   AA +     + +    +   LT RE E LT I++G T+ EIA
Sbjct: 170 VQGHTILHPDVAAKVVSGAARRQKGEGAGEGAPRRVDGLTERETEVLTLIAQGLTNQEIA 229

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  TV  + ++IM K           YA+R+ ++
Sbjct: 230 DRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHGLI 268


>gi|16080942|ref|NP_391770.1| two-component response regulator YxjM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311860|ref|ZP_03593707.1| hypothetical protein Bsubs1_20996 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316184|ref|ZP_03597989.1| hypothetical protein BsubsN3_20907 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321096|ref|ZP_03602390.1| hypothetical protein BsubsJ_20855 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325380|ref|ZP_03606674.1| hypothetical protein BsubsS_21006 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|20141933|sp|P55184|YXJL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yxjL
 gi|1783236|dbj|BAA11713.1| yxjL [Bacillus subtilis]
 gi|2636426|emb|CAB15917.1| two-component response regulator [YxjM] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 218

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214
           + ++     A   +  F++      ++     T RE+E L  ++ G  +++IA  L +S 
Sbjct: 126 EAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAEKLFVSE 185

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  ++  I++K   + R+ A+ +A+RN IV
Sbjct: 186 STVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|298251689|ref|ZP_06975492.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546281|gb|EFH80149.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 15/213 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +   +   + M    + VG         +         ++SS  P  ++  + +   D  
Sbjct: 16  VRTGLRLMLGMEEGIDLVG---------EAADGSAALHLISSLEPDVVLMDLRMPVMDGL 66

Query: 99  YNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
             + +   +     +     +   + +        R   L        +  +    +G +
Sbjct: 67  EAIERIRVQWPHIAIIVLTTYDEDDLMLRSLQAGVRGYLLKESSLETVLQAIESAARGDM 126

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           + +  L +  L  A Q     S   H   DF LT RE E L  I+ G+   E+   LGI+
Sbjct: 127 LQQPELMKRILDHATQKRSAPSA-AHENSDFHLTAREREVLAGIASGERGKEVGARLGIT 185

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R TV +Y+ SI  K    +R+ A+A A+ + ++
Sbjct: 186 RRTVESYLNSIYTKLNVDSRAAAVAIAIEHGLL 218


>gi|289665829|ref|ZP_06487410.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 199

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L  ++ G ++ +I   L IS  TV  ++ +I+ K   + R+ A+  A+R
Sbjct: 132 DDALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALR 191

Query: 243 NNIV 246
             I+
Sbjct: 192 RGIL 195


>gi|261420477|ref|YP_003254159.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319768147|ref|YP_004133648.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261376934|gb|ACX79677.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317113013|gb|ADU95505.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 391

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +++G ++ E A  L +S  TV +YI+S +RK   K R+ A+A A+R  +
Sbjct: 330 LSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKALRLGL 389

Query: 246 V 246
           +
Sbjct: 390 I 390


>gi|307332571|ref|ZP_07611620.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306881779|gb|EFN12916.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 231

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 4/135 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P     L      IG  A     
Sbjct: 97  VYQALRSGASGFLLKDASARQLGEAVRVVAAGEALLAPTVTKRLITTFSRIGEAAGLGGP 156

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +        G+  ELT RE E L  +++G ++ EIA  L ++ +TV  +++ I+ K   +
Sbjct: 157 LPSPQ----GRLAELTERENEVLVLVAQGCSNAEIAERLIVAESTVKTHVSRILVKLGLR 212

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A    +V
Sbjct: 213 DRTQAAVFAYEARLV 227


>gi|302550880|ref|ZP_07303222.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468498|gb|EFL31591.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 228

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 7/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +A +        L     +    F      +       + +     
Sbjct: 50  DVVLMDIRMPGTDGLAATRMISADPDLADVRVVILTTFEVDDYVVQSLRAGASGFLGKGS 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-----SYDVHWGKDFELTGRE 190
           +   +   + +      ++        GL++ + A                +   LTGRE
Sbjct: 110 EPEELLTAIRIAAGGQALLSPAA--TTGLISRFLAQQDPDDAGDRDPARGERLASLTGRE 167

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 168 REVLVLVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 223


>gi|256788263|ref|ZP_05526694.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289772155|ref|ZP_06531533.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289702354|gb|EFD69783.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 240

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++   L E   LA+ 
Sbjct: 107 HADVLEAVKSGATGYLLKSASTEELRDAVRRTAAGDPVFTPGLAGLV---LGEYRRLASE 163

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    + D    +   LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 164 PAPAAGTDDPGAPR---LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 220

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 221 QLHNRVELVRYAIERGL 237


>gi|297582619|ref|YP_003698399.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297141076|gb|ADH97833.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 208

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               K   LT RE E L  + EGK++ EIA  L I+  TV  +++ I+ K   + R+ A 
Sbjct: 138 QERPKHDVLTKREREVLALLGEGKSNQEIADTLFIAVKTVKTHVSHILAKLDLQDRTQAA 197

Query: 238 AYAVRNNI 245
            YA ++ +
Sbjct: 198 IYANKHQL 205


>gi|326328660|ref|ZP_08195000.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325953621|gb|EGD45621.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 61/175 (34%), Gaps = 4/175 (2%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           +    +V  D    ++  +    +        +   +    F              + + 
Sbjct: 46  RTHPDVVLMDVRMPVMDGIEALRQLSENPATAQTKVVMLTTFDADEYVHESLRLGASGFL 105

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   + ++     ++      ++      +A   +  D       +LT RE 
Sbjct: 106 LKDASPDELASAIRVVHAGEALLSPSVTRQVIA-QFARAPRKRKQDPRLK---QLTERER 161

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I+ G ++ EIA  L ++  TV  +++ I+ K   + R+ A+ +A  + +V
Sbjct: 162 EVLENIARGSSNSEIAAELFLAEQTVKTHVSRILGKLGLRDRAQAVVFAYESGLV 216


>gi|326772918|ref|ZP_08232202.1| two-component system response regulator TcsR7 [Actinomyces viscosus
           C505]
 gi|326637550|gb|EGE38452.1| two-component system response regulator TcsR7 [Actinomyces viscosus
           C505]
          Length = 230

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 6/132 (4%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +      ++   +L   + +   G ++L PK   +L +RL      A   +    S+  
Sbjct: 100 GVRGFVAKEDDVDALAGAIKQAVAGNIVLTPKSSAVLSERLQPAS--ADRGSTPPPSFSR 157

Query: 179 HWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ RE+E L  ISE  T+ +IA  L +S  T+ +++++I+ K     R 
Sbjct: 158 KEASPLPFGVTLSTRELEVLALISEALTNKQIANRLNLSEATIKSHVSAIIAKLGVPDRV 217

Query: 235 GAIAYAVRNNIV 246
           GA  +A+++ +V
Sbjct: 218 GAAVFAMQHGLV 229


>gi|328945025|gb|EGG39181.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
          Length = 210

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|15964401|ref|NP_384754.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307311543|ref|ZP_07591184.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318898|ref|ZP_07598329.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|3894103|emb|CAA11949.1| unnamed protein product [Sinorhizobium meliloti]
 gi|15073578|emb|CAC45220.1| Regulator of flagellar operons, LuxR family, probable forming a
           heterodimer with VisN [Sinorhizobium meliloti 1021]
 gi|306895312|gb|EFN26067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306899560|gb|EFN30189.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 246

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 80/212 (37%), Gaps = 25/212 (11%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVR--WDLFQEQKLDSIVSSDWPFDL--VRCMALSEKDK 97
            +  T ++  +    GAS     R    L+ ++ L  +  S  P           +E   
Sbjct: 52  GLPATRKLTCVLHNWGASCEENARDLIMLYGDELLQHLDLSLLPVLWNGQGEHQTAEVSD 111

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR- 156
           +    +R  E   P                  Y  + F +     G   +   G  I   
Sbjct: 112 FGPFTRRLRERKLP------------------YSGIAFPIRLGAQGNGYVMFAGSYIDAS 153

Query: 157 -DRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
            +++ E+ G  A   A++  + +    K   L+ RE+ CL    +G  S+EIA  +G+S 
Sbjct: 154 GEQIVELHGRSAQIMADLLAADEKRLFKAEALSDREIACLQMAGDGHISEEIAEKMGLSV 213

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TVN Y+ +   K  +  R  AIA A+R   +
Sbjct: 214 HTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 245


>gi|302561087|ref|ZP_07313429.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302478705|gb|EFL41798.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 230

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 5/137 (3%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R  +G  +  P    ++   L E   LA+ 
Sbjct: 96  HADVLEAVKSGATGYLLKSASTEDLQDAVRRTAVGDPVFTPGLAGLV---LGEYRRLASE 152

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A               LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 153 PAGPAPGDGEPGAPR--LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 210

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 211 QLHNRVELVRYAIERGL 227


>gi|110681100|ref|YP_684107.1| LuxR family transcription regulator [Roseobacter denitrificans OCh
           114]
 gi|109457216|gb|ABG33421.1| transcription regulator, LuxR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 248

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 17/186 (9%)

Query: 77  IVSSDWPFDLVRCMALSEKDKY------YNVLQRP-TELFCPVFHTLPENITPP------ 123
           IVS  +P   V     SE  +        ++L RP      P    L             
Sbjct: 56  IVSDGYPEGWVCEYLQSELFRVDPIPQLASILSRPFRWSEAPKLMRLSPEGERYMQTLAQ 115

Query: 124 -AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
               D     +     R     +    +   +  D ++E+   AA  A++       + +
Sbjct: 116 SGLGDGVAMQVYGPNMRNAYVGLGFGKQDPDLTADEIFELQ-CAAQIAHIRYCELTEFRQ 174

Query: 183 DF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ REVE L WI+ GK++  IA ILGISR+TV+     I  K     R+ A    
Sbjct: 175 RVAESLSPREVEILQWIARGKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAIRG 234

Query: 241 VRNNIV 246
           + + +V
Sbjct: 235 LGSGLV 240


>gi|307327290|ref|ZP_07606477.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886969|gb|EFN17968.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 226

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 15/176 (8%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYCS 132
             P  ++  + +   D          +        L    F T            + +  
Sbjct: 47  HHPDIVLMDIRMPGTDGLAATSAICADPELAATRVLILTTFETEDYVAQALRAGASGFLG 106

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGR 189
                  +  GL  +     ++         L+  +   M  + D H        ELTGR
Sbjct: 107 KDVTADTLLAGLRTVASGEALLSPAATR--TLITNFL--MSPAPDAHLAPPERLSELTGR 162

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E E +   +EG+++ EIA IL +S  TV  +I   M K   + R+  +  A +  +
Sbjct: 163 EREVMGLAAEGRSNTEIAEILTLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTGL 218


>gi|54026224|ref|YP_120466.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017732|dbj|BAD59102.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 220

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  +              L    F          +   + +     
Sbjct: 50  DVVLMDVRMPEMNGLDAARAILAAGFDPPVRVLMLTTFDIDDYVYEALSIGASGFLLKDA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + ++     ++          L A   +   +      +   LT RE E L 
Sbjct: 110 PAEELVRAVRVVAEGQALLAPTVTRR---LIAEVTSRRAASRKPAPELAALTPREREVLE 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L ++  TV  +++ +  K   + R+ A+  A  + +V
Sbjct: 167 LVARGMSNTEIAEALFVAEQTVKTHVSKVFSKLNLRDRAQAVVLAYESGLV 217


>gi|307700594|ref|ZP_07637626.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307614239|gb|EFN93476.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 233

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G T+ E+A  L IS  TV  ++ +I+ K   + R  A+ +A  N +
Sbjct: 172 LTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAYENGL 231

Query: 246 V 246
           V
Sbjct: 232 V 232


>gi|297528821|ref|YP_003670096.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252073|gb|ADI25519.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 391

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +++G ++ E A  L +S  TV +YI+S +RK   K R+ A+A A+R  +
Sbjct: 330 LSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKALRLGL 389

Query: 246 V 246
           +
Sbjct: 390 I 390


>gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 319

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|320008468|gb|ADW03318.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 218

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R     R      +A+   +  ++      +   L+ RE E L  ++ G ++ EI
Sbjct: 120 LLTAVRAAADGRTVLSPAVASRLVSRVRTPAAPAREP--LSVREREVLRLVARGTSNREI 177

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 178 AAELFISEATVKTHLTHVFAKLGAKDRAAAVATAYERGIL 217


>gi|16077897|ref|NP_388711.1| two-component response regulator YfiJ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308666|ref|ZP_03590513.1| hypothetical protein Bsubs1_04608 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312990|ref|ZP_03594795.1| hypothetical protein BsubsN3_04559 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317916|ref|ZP_03599210.1| hypothetical protein BsubsJ_04503 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322189|ref|ZP_03603483.1| hypothetical protein BsubsS_04599 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81818210|sp|P94439|YFIK_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yfiK
 gi|1817535|dbj|BAA11401.1| YfiK [Bacillus subtilis]
 gi|2633154|emb|CAB12659.1| two-component response regulator [YfiJ] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 220

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAY 168
             +   L E  +     D    ++   V  +  G M+L P+    +L +   E  L    
Sbjct: 88  ALIAEALEEGASGYLLKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGIN 147

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +            +  +LT RE+E L  +  G  + EIA  L I+  TV N++++I+ K 
Sbjct: 148 EIE-------KPNELLDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKL 200

Query: 229 ATKTRSGAIAYAVRNNI 245
           A + R+ A  Y+VR  +
Sbjct: 201 AVRDRTQAAIYSVRYGV 217


>gi|126433524|ref|YP_001069215.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS]
 gi|126233324|gb|ABN96724.1| metal dependent phosphohydrolase [Mycobacterium sp. JLS]
          Length = 526

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE E L  +++G T+ EIA  L IS  T  N++     K     R  A  YA+
Sbjct: 458 RQGALTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAASLYAL 517

Query: 242 RNNIV 246
            + ++
Sbjct: 518 EHGLL 522


>gi|322437485|ref|YP_004219575.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165378|gb|ADW71081.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 244

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 85/223 (38%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           +  P+ S L+    P+       + M +  E  G         +LFQ  + D +V  D  
Sbjct: 38  AAAPSLSVLIVDDHPMVREGLAGILMRSGIEVAGLGATGRQAIELFQSTRPD-VVLLDLR 96

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 + +  + +  +   R   L         E  +  +   + Y     D + +   
Sbjct: 97  LPDSSGVQVLREIRALDADARVVMLTSS--QADAEIYSAMSAGASGYLLKGIDGSTLVQQ 154

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +   GR +  + L +      Y  +             +L+ RE+E L  +++G ++
Sbjct: 155 LRHVASGGRAMSPEALEKF---TDYLTSR------------KLSEREIEVLRLVAKGNSN 199

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++ +T+  ++ S++ K     R+ A+  A++  ++
Sbjct: 200 KEIAAQLFVTEDTIKVHVRSMLAKLHASDRTQAVVIAIQRGLL 242


>gi|116254615|ref|YP_770451.1| putative transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|417645|sp|Q03316|RHIR_RHILV RecName: Full=Regulatory protein rhiR
 gi|7259800|gb|AAA26360.2| rhiR [Rhizobium leguminosarum]
 gi|115259263|emb|CAK10396.1| Putative transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 247

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 79/234 (33%), Gaps = 19/234 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D L+            +    +++Y G S+F +       E+     V  +W        
Sbjct: 14  DFLSESASAKSKDDVLLLFGKISQYFGFSYFAISGIPSPIERIDSYFVLGNWSVGWFDRY 73

Query: 91  ALSEKDKYYNVL-------------QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
             +       ++             +   +           +      + + + S+    
Sbjct: 74  RENNYVHADPIVHLSKTCDHAFVWSEALRDQKLDRQSRRVMDEAREFKLIDGF-SVPLHT 132

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFE----LTGREVE 192
           A     ++    +   +       + L+AAY  ++ ++       +  +    +T RE E
Sbjct: 133 AAGFQSIVSFGAEKVELSTCDRSALYLMAAYAHSLLRAQIGNDASRKIQALPMITTRERE 192

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + W + GKT+ EIA ILG S  T+ N I +I RK         IA + R  I+
Sbjct: 193 IIHWCAAGKTAIEIATILGRSHRTIQNVILNIQRKLNVVNTPQMIAESFRLRII 246


>gi|117928597|ref|YP_873148.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649060|gb|ABK53162.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 225

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  +++G+++ EI   LG+S  TV +++A I RK  T  R+  +A A+R  
Sbjct: 163 DLSSREIEVLRLVADGRSNKEIGDQLGLSALTVKSHLARIARKLGTGDRAEMVALAMRAG 222

Query: 245 IV 246
           I+
Sbjct: 223 II 224


>gi|298253881|ref|ZP_06977468.1| response regulator of two-component system [Gardnerella vaginalis
           5-1]
 gi|297532024|gb|EFH70999.1| response regulator of two-component system [Gardnerella vaginalis
           5-1]
          Length = 257

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N 
Sbjct: 194 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVFAYENG 253

Query: 245 IV 246
           +V
Sbjct: 254 LV 255


>gi|56418899|ref|YP_146217.1| hypothetical protein GK0364 [Geobacillus kaustophilus HTA426]
 gi|56378741|dbj|BAD74649.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 549

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--------- 183
           + F V   R G++ +  K     ++    +  LAA  A M  S   H G D         
Sbjct: 424 VPFFVGDGRYGVLAVHIKKGREAKEAEVYMTALAAIGAMMI-SGKAHGGNDGTVNIDMLS 482

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  + +G ++ EI+  L IS +TV N+I +I +K     RS  IA   + 
Sbjct: 483 EQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 542

Query: 244 N 244
           N
Sbjct: 543 N 543


>gi|256790030|ref|ZP_05528461.1| two-component response regulator [Streptomyces lividans TK24]
 gi|289773911|ref|ZP_06533289.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289704110|gb|EFD71539.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 223

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 72/223 (32%), Gaps = 14/223 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++  D           L +   +S  + V  +    +    +  +  P  ++  + 
Sbjct: 1   MTIRVLLADDQALLRATFRILID---SSEDMDVVAEAADGRDAVELTRTHRPDIVLMDIR 57

Query: 92  LSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +   D      +   +        L    F T            + +         +  G
Sbjct: 58  MPGTDGLAATAEICADPALRGTRVLILTTFETDEHVARALRIGASGFLGKDVTAEELLDG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++         L+  +  +          +D   LT RE E    +++GK+
Sbjct: 118 IRTVAAGDALLSAAATR--SLITRFLDSPDPRASPVPPEDLAALTAREREVTALVADGKS 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             EIA  L +S  TV  ++     K   + R+  +A+A R+ +
Sbjct: 176 DKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 218


>gi|284041827|ref|YP_003392167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946048|gb|ADB48792.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D R   L   V  +  G  LL P     L DR           A 
Sbjct: 91  VFAALRAGASGFMLKDVRPAQLVDAVHVVAGGDALLAPSATRRLLDRF----------AG 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                +       +LT RE++ L  +++G ++ E+A  L +S  TV  +++S++RK   +
Sbjct: 141 ELPGDERPLPDLRDLTERELDVLRLVAQGLSNAELAAYLVLSEATVKTHVSSVLRKLGLR 200

Query: 232 TRSGAIAYAVRNNI 245
            R  A+  A    +
Sbjct: 201 DRVQAVVLAYDVGL 214


>gi|290954729|ref|YP_003485911.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644255|emb|CBG67336.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V  RP  L    F              + +       A +   + ++     ++      
Sbjct: 77  VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTR 136

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              L+A +             +   LT RE E LT ++ G+++ EIA  L ++  TV  +
Sbjct: 137 R--LIADFARQRPAVRGKPALRLKRLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTH 194

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ ++ K   + R+ A+ +A  + +V
Sbjct: 195 VSRVLTKLDLRDRAQAVVFAYESGLV 220


>gi|108797883|ref|YP_638080.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866977|ref|YP_936929.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS]
 gi|108768302|gb|ABG07024.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS]
 gi|119693066|gb|ABL90139.1| metal dependent phosphohydrolase [Mycobacterium sp. KMS]
          Length = 526

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE E L  +++G T+ EIA  L IS  T  N++     K     R  A  YA+
Sbjct: 458 RQGALTAREAEVLCLVAQGATNKEIAARLVISEKTARNHVERTYAKIGVSNRVAASLYAL 517

Query: 242 RNNIV 246
            + ++
Sbjct: 518 EHGLL 522


>gi|41409450|ref|NP_962286.1| hypothetical protein MAP3352c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398281|gb|AAS05902.1| hypothetical protein MAP_3352c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 523

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 46/139 (33%), Gaps = 9/139 (6%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW---------EIGLLAA 167
                P  GM +R  +        R                RL           +   A 
Sbjct: 378 RGLAGPALGMPDRILAAAVCYQSGREPRPYREQLSEAEAARRLRGRVRCGELDPVAAEAV 437

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A           +   LT RE+E L  ++ G ++ EIA  L IS  T  N++     K
Sbjct: 438 LHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEIAAALVISEKTARNHVERTYAK 497

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R GA  YA+++ +V
Sbjct: 498 IGVSNRIGASMYALQHGLV 516


>gi|297624881|ref|YP_003706315.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297166061|gb|ADI15772.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 227

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D     L   + R+  G          +LR  L    +L  +   
Sbjct: 96  VFEAVKAGARGYLLKDAGADDLISAIRRVDEG--------ETLLRAELA-ASVLDEFSRA 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++ +    +  ELT RE   L  +++G ++ EIAV LG+S  TV N ++ I  K    
Sbjct: 147 KSETPEHPEHRLSELTEREATILRLLAQGASNQEIAVSLGVSEKTVRNRLSEIFSKLRLN 206

Query: 232 TRSGAIAYAVRNNI 245
            R+ A  YA+R  I
Sbjct: 207 NRTQAALYALREGI 220


>gi|159901290|ref|YP_001547537.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894329|gb|ABX07409.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 208

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +   LT RE+E L  +  G+++ EIA+ L I+  TV  ++ +I+ K     R+ A+
Sbjct: 137 VSNPQPESLTPRELEVLHLLGRGRSNGEIALELDIALRTVKVHVQNILGKLGATNRTEAV 196

Query: 238 AYAVRNNIV 246
           + AVR  ++
Sbjct: 197 SIAVRQQLI 205


>gi|186681008|ref|YP_001864204.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463460|gb|ACC79261.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 225

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 8/161 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L R   ++   +    L     +      T  E I   +   + YC     V R+   + 
Sbjct: 73  LPRLDGIAATQQIKAALPATHVVMLTSHQTETEIIAALSSGADAYCIKGASVERLLSAIA 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                   +          +A    +  K        +  L+ RE+E L  + +G ++ E
Sbjct: 133 AAVDGAAYLDP-------QIARRVIDNLKPP-APTSNNANLSARELEVLKLMVDGLSNPE 184

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S NT+  ++  IM K A   R  A   A+R+ +V
Sbjct: 185 IAEKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 225


>gi|290955970|ref|YP_003487152.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645496|emb|CBG68584.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 2/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +  +        L     L    F                +     
Sbjct: 50  DVVLMDIRMPGTDGIEATRTITADPALGEVKVLVLTTFEIDEYVAEAVRAGARGFIGKGA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++         L+  +QA+  +++     +  ELT RE E L 
Sbjct: 110 DPEDLLAAIETVAAGEPMLSAAA--TAALMGRFQAHAPRNWAKETERLAELTPREREMLV 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G T+D+I+  L +SR+TV  ++   M K     R+  +  A  + +V
Sbjct: 168 LVASGLTNDDISERLQLSRHTVKTHVNRAMTKIGVSERAQLVTIAYESGLV 218


>gi|225025132|ref|ZP_03714324.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC
           23834]
 gi|224942093|gb|EEG23302.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC
           23834]
          Length = 224

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 7/173 (4%)

Query: 77  IVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +VS   P  ++  + +   +       +L    E    +     +       M    C  
Sbjct: 45  LVSQLAPDVVLLDLDMPVMNGREALAQILSSRPEQKVVMLTVSEDGENLVECMRLGACGF 104

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192
                +      L+   G+    D ++   ++A    ++ +          + LT RE+E
Sbjct: 105 LL---KNINANFLIDAIGKAANGDNVFSPEMMACMVQSLIRPAQPATESALDTLTSRELE 161

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L +++ G ++  IA  + ++ +TV  ++ +I+RK    +R  A  YAV++N+
Sbjct: 162 VLRYLAVGYSNKIIAKRMDLAESTVKVHVQNILRKLELGSRVQAAVYAVQHNL 214


>gi|290957194|ref|YP_003488376.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260646720|emb|CBG69817.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 1089

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 7/168 (4%)

Query: 84   FDLVRCMALSEKDKYYNVLQRPTELFCP-----VFHTLPENITPPAGMDNRYCSLTFDVA 138
             +L R   LS+ D + +V+     L  P     V H L E +    G D+       ++ 
Sbjct: 911  AELRRAEGLSDPDTWSDVVTAFEPLERPYDLARVRHRLAEAL-LARGTDDEARDRATELL 969

Query: 139  RIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R+   +        +     L      L   +A               LTGRE + L  +
Sbjct: 970  RLAAAVADHLGARPLADAVALLARRARLTLSRAPEPALAPADPVAALGLTGREHDVLRLV 1029

Query: 198  SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + G+T+ +IA  L IS  T + ++++I+ K     R  A A A R  +
Sbjct: 1030 AVGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRVGL 1077


>gi|253991535|ref|YP_003042891.1| transcriptional regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638413|emb|CAR67035.1| transcriptional regulator of sqaz gene cluster [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782985|emb|CAQ86150.1| putative transcriptional regulator [Photorhabdus asymbiotica]
          Length = 236

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 139 RIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVE 192
                +  +  K   I   + L + G+L        K+++    K+ +     L+ REVE
Sbjct: 122 HGERSIFSVARKEGPISHNEILNKAGMLGILANECIKTFNNLKNKEDKIIVPTLSTREVE 181

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            + W  EGKTS EIA IL IS  TVN +I +IM K     
Sbjct: 182 VIRWTCEGKTSAEIANILDISTRTVNFHINNIMEKLVVPN 221


>gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040370|gb|ACT57166.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 235

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173
            L   + P AG      +    +   + G ++   +  ++  + + E  G       +  
Sbjct: 107 RLEGGLLPFAG-----IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           + +         LT RE  CL    +G TS+EIA  LG+S +TVN Y+ S   K     R
Sbjct: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221

Query: 234 SGAIAYAVRNNIV 246
             AIA A+R   +
Sbjct: 222 IQAIAKAIRFGYI 234


>gi|297191605|ref|ZP_06909003.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719345|gb|EDY63253.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 11/175 (6%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPA-GMDNRY 130
           +V+   P  ++  + +   D      +       T++     +   +++ P        Y
Sbjct: 46  LVAELAPDVVLMDLRMPRVDGVEATRRIRSEHPGTQVVVLTTYADDDSLFPALRAGARGY 105

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +   D   I   +  +      +    + +  LL    A   +           LT RE
Sbjct: 106 LTKDADGDEIVRAIQDVVAGRAGLSP--VVQRRLLEQVTA---EPPPTGPRLPDGLTARE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E LT I+EG  + +IA  LGIS  TV  +I ++  K     R+ A+ YA R  +
Sbjct: 161 GEVLTLIAEGLGNTDIAARLGISTATVKTHINNLFAKAGLHDRAQAVRYAYREGL 215


>gi|333025294|ref|ZP_08453358.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745146|gb|EGJ75587.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 205

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 7/164 (4%)

Query: 87  VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   L   +    + +R   P  L    F       +      + +       + +   
Sbjct: 37  VRMPRLDGVEATRRIHERAGAPRVLILTTFDLDEYAFSALRAGASGFMLKDVPPSELVAA 96

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++          L    A M          + + LTGRE E +  +++G +
Sbjct: 97  IRAVHSGDAVVAPSTTRR---LLDRFAPMLPGTGPATHPELDRLTGREQEVMRLVAQGLS 153

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  ++ K   + R   +  A    IV
Sbjct: 154 NGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETGIV 197


>gi|288940789|ref|YP_003443029.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288896161|gb|ADC61997.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 238

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 5/170 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  + L  + +  +  Q              + I         Y     
Sbjct: 47  DVVLLDMRMPGLNGLELLRRLRAAH--QSMPIAMLTTSAEERDVIDSLQSGAQGYLLKDM 104

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   L  +     ++  +     G+LA           V  G   +LT RE E L 
Sbjct: 105 EPDALIAALGEIVQGRTVVASE---LTGVLARAVRGESTPVPVVSGGAADLTPREQEILC 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++EG+++  IA  LGIS  TV  ++ +I+RK    +R  A   AV   +
Sbjct: 162 HLAEGQSNKTIARELGISEGTVKLHVKAILRKLDVHSRVEAAVIAVERGL 211


>gi|229028063|ref|ZP_04184215.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271]
 gi|228733301|gb|EEL84131.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271]
          Length = 214

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 78  VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V    P  ++  + +      +    V ++   +   +  T  ++      ++   + Y 
Sbjct: 39  VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 98

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +   I   ++ +   G ++ +D   +I  +   +            +  +LT REV
Sbjct: 99  LKDMETDAIAQAILTVHSGGAVLPQDITAQI--IKELKKTKVAVECTIPEQLAQLTEREV 156

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  +
Sbjct: 157 EVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 210


>gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
 gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
          Length = 273

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 11/187 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++ L  +V SD          L  K +    L     +F        + I       + Y
Sbjct: 86  QELLPDVVISDVMMPCCDGYGLLRKLRADERLGGTPVIFLTAKGMTADRIAGFQAGCDDY 145

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA-------AYQANMFKSYDVH 179
               FD   +   +     +   +L +       +IG +A       +  A   ++    
Sbjct: 146 IPKPFDPDELVARVRNAVRRQERLLAEAARFADADIGQMARQITEIRSLLATGGQAKKPA 205

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D   T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + Y
Sbjct: 206 GSTDLVFTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFIKTGTASRTELVRY 265

Query: 240 AVRNNIV 246
           A+ + +V
Sbjct: 266 ALEHGLV 272


>gi|218441961|ref|YP_002380290.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218174689|gb|ACK73422.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 210

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 18/173 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLT 134
           P  +V  + L   D      Q   EL  P  H           E +   +   + YC   
Sbjct: 47  PDLIVMDIGLPRLDGIGATKQIKEEL--PNIHVVMLTSHTQQTEVVAALSSGADAYCVKG 104

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVEC 193
             + R+   +         +         L+A    +  K+       +   L+ RE+E 
Sbjct: 105 ASLDRLLAAIDAAKDGATYLDP-------LIARLVLSNLKAPIPQQNLNISNLSERELEV 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ IV
Sbjct: 158 LKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGIV 210


>gi|169628613|ref|YP_001702262.1| putative two-component system response regulator LuxR
           [Mycobacterium abscessus ATCC 19977]
 gi|169240580|emb|CAM61608.1| Putative two-component system response regulator LuxR
           [Mycobacterium abscessus]
          Length = 218

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 5/160 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           ++ M+  E  +  +  Q P  L    F                +         +   +  
Sbjct: 61  MKQMSGIEAIRLLHAAQGPPALALTTFDDDELLSGALRAGAAGFILKDSPAEELVRAVHA 120

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +      +       +  L AY         V      +LT RE++ L  I+ G T+ EI
Sbjct: 121 VARGEAYLDPAVTSRV--LNAY---RRAPAAVSGDAQDKLTARELDVLALIASGATNSEI 175

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV ++I  I  K   + R+ AI YA  + IV
Sbjct: 176 AEQLVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHGIV 215


>gi|302552997|ref|ZP_07305339.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
 gi|302470615|gb|EFL33708.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
          Length = 227

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  I  G  LL P   +I R  + E   L      
Sbjct: 97  VYDALRAGASGFLLKDASSDQLAEAVRVIAAGDALLAP---VITRKLIAEFSRLDD---- 149

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       +  +LT RE E L  I++G ++ EIA  L ++  TV  ++  I+ K   +
Sbjct: 150 --RPRAPLKERIGDLTERETEVLALIAQGLSNAEIARHLFVAEQTVKTHVGRILVKLGLR 207

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A  + +V
Sbjct: 208 DRTQAAVFAYESGLV 222


>gi|302519560|ref|ZP_07271902.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302428455|gb|EFL00271.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 234

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 6/146 (4%)

Query: 102 LQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
            +RP   L   V     + I         Y +   +   +   +  +  +G  +   RL 
Sbjct: 94  TERPVRFLALSVSDAAEDVIGVIRAGSRGYVTKAINGTELVAAIHRVN-EGDAVFSPRLA 152

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              +L A+  N     D    K   LT RE + L  I+ G +  EIA  L IS  TV ++
Sbjct: 153 GF-VLDAFSNNTVPPVDEELDK---LTQRERDVLRLIARGHSYKEIAKELFISVKTVESH 208

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +++++RK     R     +A    +V
Sbjct: 209 VSAVLRKLQLSNRHELTRWAAARRLV 234


>gi|298241780|ref|ZP_06965587.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554834|gb|EFH88698.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 236

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 73/201 (36%), Gaps = 16/201 (7%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCPVFH 114
           VG +   L    L QEQ+ D +V      D+ +  +   E  +    L   T++     H
Sbjct: 38  VGEARNGLEAIKLVQEQRPDIVV-----MDISMAQLDGLEACERIRALAPGTQVLMLTMH 92

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-- 172
              E              +           +    +G   L   L +  L+ AY A    
Sbjct: 93  ESEEYFLQSLKKGAAGYIVKKAAPAELCNAVRTIAQGGAFLYPGLAK-ALIRAYVAPQNP 151

Query: 173 ------FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                          K  + LTGRE+E L  ++EG T+ EIA  L IS  TV  + +++M
Sbjct: 152 PEQPGSLPPQRAELDKALQTLTGREMEVLKLVAEGSTNQEIADKLVISIKTVQAHRSNMM 211

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K      +  + +A+   ++
Sbjct: 212 EKLGLHDITQLVRFALHYGLI 232


>gi|297617439|ref|YP_003702598.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145276|gb|ADI02033.1| transcriptional regulator, LuxR family [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 218

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----------LTGR 189
           +R G+M   P  R++ +  +  + L+           D+      E          L+ R
Sbjct: 95  VRTGVMGCLPL-RLLPQQIVSAVELVVGAGLLCLPRPDLKTSLGTETGESKGTFSILSRR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++   ++ EIA  L +S +TV  ++ +I RK   + R+ A+A A +  +V
Sbjct: 154 EEEVLAMLANKLSTQEIAASLYLSESTVKTHLRNIFRKLGVRNRTEAVAAAYQLGLV 210


>gi|229055057|ref|ZP_04195489.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603]
 gi|228721329|gb|EEL72853.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603]
          Length = 214

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 8/174 (4%)

Query: 78  VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V    P  ++  + +      +    V ++   +   +  T  ++      ++   + Y 
Sbjct: 39  VKQLQPEIILMDIRMPRMNGVEGTRLVREKFPYIKVLMLTTFSDSELIFEALEQGASGYL 98

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +   I   ++ +   G ++ +D   +I           +       K  +LT REV
Sbjct: 99  LKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK--QLTEREV 156

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  +
Sbjct: 157 DVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 210


>gi|227820844|ref|YP_002824814.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227339843|gb|ACP24061.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 246

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKSYDVHWG 181
           G    Y  + F +     G   +   G  I       L   G  A   A+M  + +    
Sbjct: 121 GRKLSYSGIAFPIRLGAQGNGYVVFAGSYIDAPAEQVLDLHGRCAQVMADMLAADERRLF 180

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE+ CL    +G  S+EIA  +G+S +TVN Y+ +   K  +  R  AIA A+
Sbjct: 181 KGESLSDREIACLQMAGDGYISEEIAEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAI 240

Query: 242 RNNIV 246
           R   +
Sbjct: 241 RLGYI 245


>gi|254522679|ref|ZP_05134734.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219720270|gb|EED38795.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 201

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +   +       L  P  +    F      +         Y     
Sbjct: 37  DVVLMDMRMPVMSGLEALQVLSRQEQL--PPTIILTTFDDDQLVLAGLKAGAKGYLLKDV 94

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +A++   +  +   G ++         LL+  +    ++  V   +   LT RE E L 
Sbjct: 95  TLAQLVGAIRTVADGGSLVQPAVTQR--LLSGLEH--MRNEFVSLDRPDPLTDRETEILR 150

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 151 LMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 201


>gi|47567457|ref|ZP_00238169.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|47555859|gb|EAL14198.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
          Length = 218

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 78  VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V    P  ++  + +      +    V ++   +   +  T  ++      ++   + Y 
Sbjct: 43  VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFSDSELIFEALEQGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +   I   ++ +   G ++ +D   +I  +   +            +  +LT REV
Sbjct: 103 LKDMETDAIAQAILTVHSGGAVLPQDITAQI--IKELKKTKVAVECTTPEQLAQLTEREV 160

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 161 DILREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 214


>gi|256830668|ref|YP_003159396.1| LuxR family transcriptional regulator [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579844|gb|ACU90980.1| transcriptional regulator, LuxR family [Desulfomicrobium baculatum
           DSM 4028]
          Length = 335

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 75/234 (32%), Gaps = 14/234 (5%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRM--YALTEYVGASHFLLVRWDLFQEQK 73
           D+  +  V+           M+ +         +    L++  G S           E  
Sbjct: 103 DKVTSIRVNTGRKPGQAGPAMLGIVGDDPLLNDLLAARLSQETGVSCSHSPSLPRILETA 162

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
              +   D        M++ E  +  N    P          +PE+ +      N     
Sbjct: 163 RPDLTLLD-----CTGMSMEELLREANGEDSPFMSTSVALFNVPEDRSLELEAINSGIRG 217

Query: 134 TF----DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
            F        +  G+  +        R+ +    L    + N             +L+ R
Sbjct: 218 IFFRNSPFKLMVKGVSAMLDNELWFSREAMSAFLL---GKQNRPAELSAPENGQADLSQR 274

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E E L  ++ G T+ +IA  L +S NTV ++I +I +K     R  A  +A R+
Sbjct: 275 EQEILLMLAAGATNKDIAQKLFLSLNTVKSHIYNIYKKIDVPNRLQASLWAARH 328


>gi|329936313|ref|ZP_08286078.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304109|gb|EGG47990.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +    +G++ + D L  +     +  +  +S   H     +LT RE   L  I+EG ++ 
Sbjct: 133 LRRLERGKLPIPDTLARL-----FIRHAGRSRGTHRSPRVQLTPREQAVLGLIAEGLSNR 187

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA   GIS + V  ++A+++ K     R+ A++ A++  ++
Sbjct: 188 MIAHRFGISEHGVKRHVANLLAKFNCSNRAQAVSVALQQGLL 229


>gi|75910055|ref|YP_324351.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75703780|gb|ABA23456.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 227

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   YC       ++ + L  +             EI        +     +    
Sbjct: 97  LIEAGAQGYCLKGIIAEKLVLALRSVAAGASWWDETATREIRSSIESSQSQSPEQNFTKS 156

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  LTGRE+E L+ +++GKT+ EIA  L I+  TV  ++ +I+ K     R  A+  A+
Sbjct: 157 -DHPLTGRELEILSLLAKGKTNQEIATALYITPGTVRVHVHAILHKLEVSDRHQAVVVAL 215

Query: 242 RNNIV 246
           +  ++
Sbjct: 216 QKRLI 220


>gi|302559483|ref|ZP_07311825.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477101|gb|EFL40194.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P    I R  + E   L A    
Sbjct: 90  VYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPG---ITRRLIAEFSRLDA---- 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       +  ELT RE E L  I++G ++ EIAV L ++  TV  ++  I+ K   +
Sbjct: 143 --RPRTPLRQRVGELTERETEVLALIAQGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A  + +V
Sbjct: 201 DRTQAAVFAYESGLV 215


>gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 229

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 29/208 (13%)

Query: 67  DLFQEQKLDSIVSS------DW-----PFDLVRCMALSEKDKY---YNVLQRPTELFCPV 112
           D  QE      V+S      DW     P  ++  + + + D Y     + + P     PV
Sbjct: 20  DYLQESGFSVQVASNAREGWDWMQQNTPDLVISDVMMPQVDGYQFLKQLREDPRFQTVPV 79

Query: 113 FHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLF----------PKGRIILRD 157
                + +T           + Y    FD   +   +  L               I + +
Sbjct: 80  IFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAIVENLLSRRLTKATGEESETIDIAE 139

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
              +I  + A                 +LT RE   L  ++EG  + EIA  L  S   V
Sbjct: 140 LANQIAQIKALLTQRSAISQSPAPFKIDLTPREQSVLNLVAEGLMNKEIARRLETSVRNV 199

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             Y++ +  KT T +R+  + +A+ + +
Sbjct: 200 EKYVSRLFSKTGTNSRTELVRFALEHGL 227


>gi|225872928|ref|YP_002754385.1| DNA-binding response regulator, LuxR family [Acidobacterium
           capsulatum ATCC 51196]
 gi|225794168|gb|ACO34258.1| DNA-binding response regulator, LuxR family [Acidobacterium
           capsulatum ATCC 51196]
          Length = 213

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L+ IS+GK++ EIA +L ++ NTV  ++  I+ K     R+ A+  A++  
Sbjct: 150 KLSERELEVLSLISKGKSNKEIAGLLFVTDNTVKMHVKKILSKLQANDRTQAVVIAIQRG 209

Query: 245 IV 246
           ++
Sbjct: 210 LL 211


>gi|324991970|gb|EGC23892.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
          Length = 210

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHEDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|260555377|ref|ZP_05827598.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411919|gb|EEX05216.1| response regulator [Acinetobacter baumannii ATCC 19606]
          Length = 319

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|171057768|ref|YP_001790117.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775213|gb|ACB33352.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 316

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F LT RE E L W+++GKT+ +I  ILG S  TV  ++  +  K   +TR+ A A A+
Sbjct: 251 FRLTPREAEVLYWLAKGKTNRDIGEILGSSAATVKKHLEHVYEKLGVETRNAAAAVAI 308


>gi|1429258|emb|CAA67717.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 218

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214
           + ++     A   +  F++      ++     T RE+E L  ++ G  +++IA  L +S 
Sbjct: 126 EAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAEKLFVSE 185

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  ++  I++K   + R+ A+ +A+RN IV
Sbjct: 186 STVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|328952588|ref|YP_004369922.1| two component transcriptional regulator, LuxR family [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452912|gb|AEB08741.1| two component transcriptional regulator, LuxR family [Desulfobacca
           acetoxidans DSM 11109]
          Length = 222

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDFELTGREVECLTWISEGKTS 203
           LF     I +   +   LL+    ++       D     +  LT RE E L  I+EGK+S
Sbjct: 113 LFSAIDTIRQQGTYISPLLSPQLKDLLLRKYREDRSQFPEDPLTKREKEILRLIAEGKSS 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EI  +L IS  TV ++ A++MRK   +  +  + YA++  
Sbjct: 173 KEIGAVLFISSRTVEHHRANMMRKLGCRKIAELVRYAIQKG 213


>gi|253998423|ref|YP_003050486.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200498|ref|YP_004039156.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985102|gb|ACT49959.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312439814|gb|ADQ83920.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 314

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           F+LT RE E L W  +GKT+ +I  ILG S  T+N ++  +  K   +TR+ A A A
Sbjct: 252 FKLTRRESEVLYWAMQGKTNRDIGDILGTSPRTINKHLEHVFTKLGVETRTAASALA 308


>gi|291301217|ref|YP_003512495.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570437|gb|ADD43402.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 235

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              G    LT RE E L  ++ G+++ EIA  L ++  TV  +++S+ RK     R+ A 
Sbjct: 139 PAPGPVAALTAREREVLALVAAGRSNREIAKQLSVAEKTVKTHLSSLFRKLGVADRTQAA 198

Query: 238 AYAVRNN 244
            YAV + 
Sbjct: 199 LYAVTHG 205


>gi|229131218|ref|ZP_04260124.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196]
 gi|228652209|gb|EEL08140.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196]
          Length = 214

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 8/174 (4%)

Query: 78  VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V    P  ++  + +      +    V ++   +   +  T  ++      ++   + Y 
Sbjct: 39  VKQLQPEIILMDIRMPRMNGVEGTRLVREKFPYIKVLMLTTFSDSELIFEALEQGASGYL 98

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +   I   ++ +   G ++ +D   +I           +       K  +LT REV
Sbjct: 99  LKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK--QLTEREV 156

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  +
Sbjct: 157 DVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 210


>gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1]
 gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1]
          Length = 319

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|329120079|ref|ZP_08248749.1| nitrate/nitrite response regulator protein NarL [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463610|gb|EGF09928.1| nitrate/nitrite response regulator protein NarL [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 225

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 87/221 (39%), Gaps = 14/221 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D   R++ +D    +   + AL      S F +V         + ++  +D P  ++  +
Sbjct: 6   DQNIRIVLIDDHTLFRSGIKALLAR--QSGFEVVGEASDGLTGIKTVRQTD-PDVVLLDL 62

Query: 91  ALSEKDKYYNVLQ----RPTE--LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +   +    + Q    RP +  +   V     + +       + +     +   +   +
Sbjct: 63  DMPVMNGRETLAQILSVRPQQCVVMLTVSEDGDDLLECMRLGAHGFLLKNINADFLTESI 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +   + +  +      Q+ +  +  V   +  ELT RE+E L +++ G ++ 
Sbjct: 123 RNAAEGNNVFSPEMMANM-----VQSLIKPAKPVEENRLDELTARELEVLGYLAAGHSNK 177

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  L ++ +TV  Y+ +I+RK    +R  A  YAV++ +
Sbjct: 178 IIARSLDLAESTVKVYVQNILRKLELTSRVQAAVYAVQHKV 218


>gi|158334639|ref|YP_001515811.1| two-component response regulator [Acaryochloris marina MBIC11017]
 gi|158304880|gb|ABW26497.1| two-component response regulator [Acaryochloris marina MBIC11017]
          Length = 222

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 1/157 (0%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +S   K          L    F    + +   A   + YC  + D  ++   + L+   
Sbjct: 66  GISATQKIKATCPDIRVLALSAFGKDNQVVGMLAAGADGYCLKSIDWQQLLAVIRLIQGG 125

Query: 151 GRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           G  +          +L +                  L+ RE E L  ISEG ++ EIA  
Sbjct: 126 GTYLDPQIAHKLASMLKSANTPTTAPAHRQTAPATVLSDREREVLQLISEGCSNQEIANQ 185

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +S  T+ +Y+  I+ K +   R  A A AVR  ++
Sbjct: 186 LYLSLGTIKSYVRMILNKLSVDDRVQAAAKAVREGLI 222


>gi|54022870|ref|YP_117112.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014378|dbj|BAD55748.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 211

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 2/141 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V     + I         Y + T   A +  G+  +     +    RL    +
Sbjct: 72  PVCLALSVSDAAEDVIAVIRAGARGYVTKTISGAELADGIRRVAGGDAVFSP-RLAGF-V 129

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L ++             +   LT RE+E L  ++ G T  EIA  L IS  TV  + +++
Sbjct: 130 LDSFTGRSPVPEPPLDPELDSLTPRELEVLRLLARGYTYREIAETLFISVKTVETHASNV 189

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           +RKT    R+    +A R  I
Sbjct: 190 LRKTQQSNRNALTRWAHRRRI 210


>gi|121604753|ref|YP_982082.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593722|gb|ABM37161.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 262

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           LL  ++        +   K+ E L+ RE + L  ++ G TS EI   L IS  TVN +I 
Sbjct: 179 LLNKFEQPQNNVQTLQENKNKEKLSEREKQVLKLVASGYTSTEIGSRLIISGQTVNTHIK 238

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           +I RK   +TR+ A+++A    +
Sbjct: 239 NIYRKLNVRTRAQAVSFAASRGL 261


>gi|308179160|ref|YP_003918566.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307746623|emb|CBT77595.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 234

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +     D     L   V  +  G  ++ P+    +  RL E  +  A     
Sbjct: 96  FSGLQAGASAFLLKDVAPEELVHAVRLVASGDAVVAPR----VTARLLETYVRNAGHGVP 151

Query: 173 FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            ++ +       + LT RE E L  ++EG ++ EIA    +S  TV  ++  I+ K   +
Sbjct: 152 GQAAEPKRDPLLDDLTPREQEVLRALAEGLSNAEIAHRFFLSEATVKTHVRRILTKLHLR 211

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+ YA    +V
Sbjct: 212 DRVQAVVYAYETGLV 226


>gi|284050884|ref|ZP_06381094.1| two-component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
          Length = 215

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 85/217 (39%), Gaps = 19/217 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++ +D        + +L E       VG +    V  +L  + K D ++        
Sbjct: 1   MIRVLLVDDQGIIREGLRSLLEAKPDLEIVGEAENGKVAVELALKLKPDVVLMD------ 54

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           VR   +       ++ ++  E+   V  T  ++      M+     Y         +   
Sbjct: 55  VRMPIMDGVAAMRSLAEQQPEIKVLVLTTFDDDEYITQAMESGAKGYLLKDTPSDELAQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++ +G   L   L+E  + A    +     +   G   +LT RE+E L  I +G ++
Sbjct: 115 IRAVY-QGYTQLGPGLFEKVMAA---KSKPSRDEPLPGYLQDLTPRELEVLRLIGKGYSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            EIA  L IS  TV N+++SI+ +   + R+     A
Sbjct: 171 REIAQELFISERTVKNHVSSILSRLNLRDRTQVALLA 207


>gi|302558898|ref|ZP_07311240.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302476516|gb|EFL39609.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 237

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 10/147 (6%)

Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +RP   L   V     + I    G    Y + T     +   +  +     +        
Sbjct: 98  ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSP----- 152

Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              LA +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +
Sbjct: 153 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVES 210

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++RK     R     +A    +V
Sbjct: 211 HVSAVLRKLQLSNRHELTRWATARRLV 237


>gi|284030307|ref|YP_003380238.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809600|gb|ADB31439.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 213

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 56/155 (36%), Gaps = 8/155 (5%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLMLLFPK 150
           L        +     E    V  T  ++ +    +       LT D  R+ IG  L    
Sbjct: 63  LDGVQATARLTADNPEAAVLVLTTYADDASIAQALRAGARGYLTKDAGRVEIGAALRATA 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                 D      L+A              G    LT RE E L  I++G ++ EIA +L
Sbjct: 123 AGQSTFDPEVARRLVAGL-------SPAPAGSKDGLTARETEVLRLIAQGLSNGEIAGLL 175

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I   TV  +I +   K   + R+ A+ YA R+ I
Sbjct: 176 FIGEATVKTHINNTFAKIGARHRAEAVRYAYRHGI 210


>gi|71068204|gb|AAZ23059.1| probable putative response regulator [Streptomyces fradiae]
          Length = 227

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 17/208 (8%)

Query: 55  YVGASHFLLVRWDLF------QEQKLDSIVSSDWPFDLVRCMALSEKDKYYN-------- 100
             G +  L  + D+         ++   +  S  P  ++  + + E D            
Sbjct: 15  RAGFAALLTAQDDIDVVGEAPDGKRGVEVSRSVHPDVVLMDVRMPEMDGLAAARALLDPP 74

Query: 101 --VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
             V+ RP  L    F              + +       A +   + ++     ++    
Sbjct: 75  PGVVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSV 134

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
              +    A Q       +     +  LT RE E L  I+ G ++ EIA  L ++  TV 
Sbjct: 135 TRRLIAEFAKQRPATARGNPALRLN-GLTPRETEVLGLIARGLSNQEIAGRLVLAEQTVK 193

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  ++ K   + R+ A+ +A  + +V
Sbjct: 194 THVGRVLAKLTLRDRAQAVVFAYESGLV 221


>gi|75908249|ref|YP_322545.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75701974|gb|ABA21650.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 219

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 83/217 (38%), Gaps = 18/217 (8%)

Query: 33  LARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + +++ +D        + AL       E VG +    +  DL  +   D +V  D    +
Sbjct: 1   MIKVLLVDDQNLIRQGLRALLELESDIEIVGEAENGKIAIDLIPQFHPD-VVLMDMRMPI 59

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           +  +A ++      + +    +   V  T  ++    A + N    Y         + + 
Sbjct: 60  MDGVAATQ-----EIQRNFPSVKVLVLTTFDDDEYVKAALQNGAMGYLLKDTPSEELAVA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +    + +  LL  +Q+    +         +LT RE E L  I+ G  +
Sbjct: 115 IRAVEKGYTQLGPGIVKK--LLVQFQSTPNHTPPAPTNL-ADLTPREKEVLRLIAAGANN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            EIA  L IS  TV N++ +I+ + + + R+ A   A
Sbjct: 172 KEIAQQLYISEGTVKNHVTNILNRLSLRDRTQAAIIA 208


>gi|124268980|ref|YP_001022984.1| LuxR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124261755|gb|ABM96749.1| putative LuxR-family transcriptional regulator [Methylibium
           petroleiphilum PM1]
          Length = 237

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 85/236 (36%), Gaps = 27/236 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGA---SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
              ++       +   +    + +G    S   +V   +      + +   + P      
Sbjct: 6   FQSVLEARNRDEFRGEVVRFAKRLGFETVSAITVVDHPVGD---TEFVAIDNAPDAYKDA 62

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +   +  +   V+Q       P+     ++    AG  + + +      R  I L L  P
Sbjct: 63  IEDPKAGQLDPVMQHCKRQSVPII--WDQSTYVSAGQGSMWEAQARFGFRTGICLALHMP 120

Query: 150 KGR----------IILRDRLWEIGLLAAYQANMFKSYDVHWG---------KDFELTGRE 190
           +GR           + +DR     L+A  Q     + D             +  +LT RE
Sbjct: 121 EGRHFVIGVDRDQALPKDRGEVTRLVADLQLFAVHAQDTAMRVLVPERLQLERPKLTPRE 180

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ L W  +GKT+ E+  I+GIS  T   +I + M K A   +  A+  A+R  ++
Sbjct: 181 LDSLRWTMDGKTAWEVGSIMGISERTAVLHINNAMHKLACTNKHQAVLKALRLGLL 236


>gi|260899471|ref|ZP_05907866.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|308109241|gb|EFO46781.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
          Length = 217

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
           D  ++ +GL  +      + RD L +   L  Y  ++  +      K + ELT RE++ L
Sbjct: 110 DFDKVMMGLKGILNGENWLSRDILNQ---LIGYLLSLNNTVGELETKLEMELTRRELQVL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + + +G ++ +IA  L +S +TV +++ SI RK   K R  AI +A RN
Sbjct: 167 SALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215


>gi|229171060|ref|ZP_04298658.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3]
 gi|228612390|gb|EEK69614.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3]
          Length = 213

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 17/178 (9%)

Query: 78  VSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V    P  ++  + +      +    V ++   +   +  T  ++      ++   + Y 
Sbjct: 39  VKELHPEIILMDIRMPRMNGVEGTRLVREQFPHIKVLMLTTFNDSELIFEALEQGASGYL 98

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               +   I   ++ +   G ++ +D       + A      K   V      E    LT
Sbjct: 99  LKDMETDAIAQAILTVHSGGVVLPQD-------ITAQIIEELKKTKVAVCNPPEQLKQLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  +
Sbjct: 152 EREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGV 209


>gi|82703694|ref|YP_413260.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411759|gb|ABB75868.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 257

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 140 IRIGLMLLFPKGRIILRDRL----------WEIGLLAAYQANMFKSYDVHWGKDFEL-TG 188
            R      F +    L +R             + L+                +  +L T 
Sbjct: 139 GRTTCFFTFTQISAALSERHAYFLELLMPHMHMALVRMLFHERHHKQGAVGERSRKLITD 198

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L  +  GK++ EIA +L IS  TV N+I  I++K     R+ A+A A+   I
Sbjct: 199 RETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKILKKLDVNNRAHAVAKAMALKI 255


>gi|227832318|ref|YP_002834025.1| putative transcription regulator [Corynebacterium aurimucosum ATCC
           700975]
 gi|262183824|ref|ZP_06043245.1| putative transcription regulator [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453334|gb|ACP32087.1| putative transcription regulator [Corynebacterium aurimucosum ATCC
           700975]
          Length = 219

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 2/156 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+  +   N   RP  L   V     + I         Y +       +   ++ +   
Sbjct: 64  GLAVINATANQPARPVFLALSVSDAAEDVIALIRAGARGYVTKNISGPDLAEAVVQV-HS 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209
           G      RL    L A    +     +       + LT RE+E L  ++ G T  EI   
Sbjct: 123 GDAYFSPRLAGFVLDAFASGSPAPEPEEGQDPAVDALTRRELEVLRLLARGYTYREIGKQ 182

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L IS  TV  + ++I+RKT    R     +A   ++
Sbjct: 183 LFISVKTVETHASNILRKTQQSNRHQLTRWATSRDL 218


>gi|193077065|gb|ABO11822.2| putative two-component response regulator protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 319

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|182677912|ref|YP_001832058.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633795|gb|ACB94569.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 268

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 169 QANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           Q   F+ +    G D   +T RE+E L+W +EGKT ++I+V++ IS+ TV  ++ S   K
Sbjct: 189 QQRAFEMHHQDEGIDINTITKREIEALSWSAEGKTLEDISVLMRISQETVKAHLDSARYK 248

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R  A+A A+R  ++
Sbjct: 249 LGALNRIHAVAKAIRAGLI 267


>gi|114328502|ref|YP_745659.1| LuxR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316676|gb|ABI62736.1| transcriptional regulator, LuxR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 306

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           +++R          + I       +  I++R  + +                        
Sbjct: 196 VESRLSPEGTGSREVEIVFFGTSREDEILMRLIINDPAEEQTILHQRLP----------- 244

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +T RE E L WI  GK + +IA ILG+S  TVN ++  I  K   + R+ A A  ++
Sbjct: 245 VTAREAEVLLWIGRGKQNRDIADILGLSPRTVNKHLEQIYTKIGVENRAAAAAVVMK 301


>gi|37223233|gb|AAQ90216.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 79/219 (36%), Gaps = 17/219 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++            +  +T+ V   ++LL         K D  +  ++P    +   
Sbjct: 14  IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140
            +   KY  ++        P+   + EN        N              S     A  
Sbjct: 74  DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANN 133

Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
             G++      +    D L       I L+     + ++  ++   K + +LT RE ECL
Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            W  EGK+S +I+ ILG S+ TV  ++ +   K  T  R
Sbjct: 194 AWACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNR 232


>gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 247

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 79/217 (36%), Gaps = 24/217 (11%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-- 108
           A+  Y+  S F ++     Q+     ++S+  P  ++  + +   D Y   L +  +L  
Sbjct: 32  AVQAYLEDSGFEVIPAANAQQAL--QLLSTAQPQLIISDIMMPGMDGY-QFLAQLRKLEP 88

Query: 109 --FCPVFHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR--- 158
               PV     + +T           + Y    FD   +   +  L  + R         
Sbjct: 89  YSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIERSRAASPSEVVA 148

Query: 159 ---------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                    L E  L  A  A       +      ELT RE + L  ++EG  + EIA  
Sbjct: 149 RELASIRALLSERTLATATPAQTSAPTPLPPPIKVELTPREQQVLEKVAEGLMNKEIAKQ 208

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  S   V  Y+  ++ KT T +R+  + YA+   ++
Sbjct: 209 LQTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 245


>gi|311896491|dbj|BAJ28899.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 5/153 (3%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  +          L   V     + I    G    Y + T     +   +  +   G  
Sbjct: 78  EVLRRSAGADGVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVKAIFRIA-DGDA 136

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +   RL    +L A+ A      D    +   LT RE E L  I+ G    EIA  L IS
Sbjct: 137 VFSPRLAGF-VLDAFAATDTPPVDEDLDR---LTQREREVLRLIARGYAYKEIAKQLFIS 192

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV +++++++RK     R     +A    +V
Sbjct: 193 VKTVESHVSAVLRKLQLSNRHELTRWATARRLV 225


>gi|282897990|ref|ZP_06305985.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281197134|gb|EFA72035.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 229

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 87/214 (40%), Gaps = 20/214 (9%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT---E 107
           ++++Y+    + ++  D    +   SI+  +    +V  + +   + Y  V +       
Sbjct: 17  SISDYLELCGYSVLTAD--DGENALSIIQQEHLDLMVTDIIMPRMNGYELVRRVRQNIEF 74

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV          E I       + Y    F++  +   +  L  + +II  +     
Sbjct: 75  RLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAVRNLLERSQIIQSEYCLSS 134

Query: 163 GLLAAYQ-ANMFKSYDVHWGKDFE---------LTGREVECLTWISEGKTSDEIAVILGI 212
            +   +   +  +S  +   +            ++ RE E L  ++ G ++ EI   L +
Sbjct: 135 QITGGFSPDDKTRSLSIPRTETLNHPDSHILMSISTREREVLELLTHGLSNAEIGSKLYL 194

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  Y++S++RKT++  R+  + +A++++IV
Sbjct: 195 SPRTVEKYVSSLLRKTSSNNRAELVRFAIKHDIV 228


>gi|254390623|ref|ZP_05005837.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812218|ref|ZP_06770861.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440627|ref|ZP_08215361.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704324|gb|EDY50136.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324817|gb|EFG06460.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 228

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 7/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +A +        L     +    F      +       + +     
Sbjct: 50  DVVLMDIRMPGTDGLAATRTITADPALAAVRVIMLTTFEVDEYVVGALRAGASGFLGKGA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190
           +   +   + ++     ++        GL+A + A      D      +      LTGRE
Sbjct: 110 EPEELLNAIRIVAAGEALLSPTATK--GLIARFLAQGGDGADEQRAAAYGERLNALTGRE 167

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++ G ++DEI   L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 168 REVLVLVAGGLSNDEIGERLDVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 223


>gi|188534209|ref|YP_001908006.1| Regulatory protein [Erwinia tasmaniensis Et1/99]
 gi|188029251|emb|CAO97128.1| Regulatory protein [Erwinia tasmaniensis Et1/99]
          Length = 240

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +L+ RE+E L W +EGKTS EI++IL IS+NTVN +   + ++     ++   +YA   
Sbjct: 178 LDLSERELEVLKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAI 237

Query: 244 NIV 246
            ++
Sbjct: 238 GLI 240


>gi|184157756|ref|YP_001846095.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332876442|ref|ZP_08444209.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183209350|gb|ACC56748.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|322508066|gb|ADX03520.1| Putative two-component response regulator protein [Acinetobacter
           baumannii 1656-2]
 gi|323517648|gb|ADX92029.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735300|gb|EGJ66360.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 319

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|91787753|ref|YP_548705.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91696978|gb|ABE43807.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 270

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE + + W++ GKT+ EI  IL IS  TV N++  I +K     R+ A++   R
Sbjct: 209 LSERETQIMAWVAMGKTNSEIGTILNISGFTVKNHMQRIFQKLNVFNRTQAVSKVTR 265


>gi|300779752|ref|ZP_07089608.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533862|gb|EFK54921.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 220

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 52/169 (30%), Gaps = 20/169 (11%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           M              P  L   V     + I         Y +   D   +   +  +  
Sbjct: 58  MPDGGGLAVITRAPGPQYLALSVSDAAEDVIALIRAGARGYVTKNIDGPELAEAITQVHG 117

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------------LTGREVECLTW 196
                          LA +  + F S  V      E             LT RE+E L  
Sbjct: 118 GDAYFSP-------RLAGFVLDAFASGGVVEDPAGEPEKAGEDEAVVDKLTRRELEVLRL 170

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ G T  EIA  L IS  TV  + ++++RKT T  R     +A    +
Sbjct: 171 LARGYTYKEIASELFISVKTVETHASNVLRKTQTSNRHQLTRWASERAL 219


>gi|94314242|ref|YP_587451.1| transcriptional regulator two component heavy metal regulatory
           response ZniR [Cupriavidus metallidurans CH34]
 gi|93358094|gb|ABF12182.1| transcriptional regulator two component heavy metal regulatory
           response ZniR [Cupriavidus metallidurans CH34]
          Length = 206

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 ++  L+ RE+E L+W + GKTS EIA ILG+S+ TV+ +I     K    TR  
Sbjct: 134 PQQRTPQNVTLSEREIEALSWSARGKTSGEIATILGLSKRTVDFHIDRAREKLGVATRVE 193

Query: 236 AIAYAVRNNIV 246
           A+  A     +
Sbjct: 194 AVVRAATEGFI 204


>gi|288555323|ref|YP_003427258.1| two-component response regulator LiaR [Bacillus pseudofirmus OF4]
 gi|288546483|gb|ADC50366.1| LiaR two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 214

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE+E L  I  G+++ EIA  L I   TV  ++++I++K A + R+    YA R
Sbjct: 150 HEELTPRELEVLKLIGVGQSNQEIAESLFIGIKTVKTHVSNILQKLALEDRTQIAIYAHR 209

Query: 243 NNIV 246
           + +V
Sbjct: 210 HGLV 213


>gi|225021584|ref|ZP_03710776.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681229|ref|ZP_07404036.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|224945575|gb|EEG26784.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659434|gb|EFM48934.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 215

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 13/135 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          D+    L   V R  +G             + L +  L     A 
Sbjct: 93  VFGALEAGACGILLKDSSMTDLVEGVRRAALG-------------EGLVDASLTRRVIAE 139

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +   +       LT RE++C+  + +G +++EIA  L +  +TV  +++S M KT T 
Sbjct: 140 FTRRKSIFTSSSEVLTPRELDCVAQLCQGMSNNEIATTLFLEPSTVKTHLSSAMAKTGTH 199

Query: 232 TRSGAIAYAVRNNIV 246
            R   + +A RN +V
Sbjct: 200 NRVQLVIWAFRNGVV 214


>gi|89902166|ref|YP_524637.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89346903|gb|ABD71106.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 328

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F+LT RE E L W+ +GK + +I  ILG S  TV  ++  +  K   +TR+ A   A+  
Sbjct: 259 FKLTPREAEVLYWVVKGKINRDIGDILGSSPMTVKKHLEHVFAKLGVETRTAAAGMAMSR 318


>gi|326797312|ref|YP_004315132.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326548076|gb|ADZ93296.1| transcriptional regulator, LuxR family [Marinomonas mediterranea
           MMB-1]
          Length = 254

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 36/53 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L WIS GKT+ EI++ILGIS NTV N++ASI+ K     R  A A
Sbjct: 198 LTSREREVLNWISSGKTNGEISMILGISPNTVKNHVASILGKLNAPNRLAATA 250


>gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0101]
          Length = 248

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 10/186 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++ L  +V SD     +    L  K +    L     +F        + I       + Y
Sbjct: 62  QELLPDLVISDVMMPRLDGYGLLRKLRDDERLGGTPVIFLTAKGMTADRIEGFQAGCDDY 121

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKD--- 183
               FD   +   +  +  +   +L++       +IG +A     +         K    
Sbjct: 122 IPKPFDPDELVARVRNVVRRQERLLQEAARFADADIGQMAKQITEIRSLLATGGSKKQSA 181

Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               E T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA
Sbjct: 182 AVKHEFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTELVRYA 241

Query: 241 VRNNIV 246
           + + +V
Sbjct: 242 LEHGLV 247


>gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624]
          Length = 319

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|256378465|ref|YP_003102125.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922768|gb|ACU38279.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 215

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA+Y                ELTGRE++ L  ++ G ++ EIA  L ++  TV  ++ +
Sbjct: 132 VLASY---RRFGRPAPANAPGELTGRELDVLRLMARGASNREIAGRLCLAETTVKTHVGA 188

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K   + R+ AI +A  + IV
Sbjct: 189 IFGKLGARDRAAAIVFAYDSGIV 211


>gi|224552975|gb|ACN54736.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+ 
Sbjct: 141 HQKKNVFLSPRECQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 201 LGTELRLL 208


>gi|224552951|gb|ACN54720.1| PagR [Pantoea agglomerans]
 gi|224552954|gb|ACN54722.1| PagR [Pantoea agglomerans]
 gi|224552957|gb|ACN54724.1| PagR [Pantoea agglomerans]
 gi|224552960|gb|ACN54726.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+ 
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 201 LGTELRLL 208


>gi|224552948|gb|ACN54718.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+ 
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 201 LGTELRLL 208


>gi|224552945|gb|ACN54716.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+ 
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 201 LGTELRLL 208


>gi|224552936|gb|ACN54710.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+ 
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 201 LGTELRLL 208


>gi|224552912|gb|ACN54694.1| PagR [Pantoea agglomerans]
 gi|224552930|gb|ACN54706.1| PagR [Pantoea agglomerans]
 gi|224552963|gb|ACN54728.1| PagR [Pantoea agglomerans]
 gi|224552966|gb|ACN54730.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+ 
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 201 LGTELRLL 208


>gi|224552903|gb|ACN54688.1| PagR [Pantoea agglomerans]
 gi|224552906|gb|ACN54690.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+ 
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 201 LGTELRLL 208


>gi|316935504|ref|YP_004110486.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603218|gb|ADU45753.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 309

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           +L     L     +        +  +F LT RE E L W+S+GKT+ +IA ILG+S  TV
Sbjct: 219 KLGPNEFLLRLARDTATEAPTQFSAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTV 278

Query: 218 NNYIASIMRKTATKTR 233
           + ++  I  K   + R
Sbjct: 279 DKHLEQIYAKLGVENR 294


>gi|123441908|ref|YP_001005891.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088869|emb|CAL11676.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 244

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 38/226 (16%)

Query: 59  SHFLLVRWDLFQEQKLDSIVS-----------SDWPFDLVRCMALSEKDKYYNVLQRPTE 107
            +++  R   + + +   +V            S++P D V+    +       V+    +
Sbjct: 16  KNYIQRRIKAYGDLRYSYLVMNKKTPLHPTIISNYPLDWVKKYKKNSYHLIDPVILTAKD 75

Query: 108 LFCPVF--------HTLPENITPPAGMD----NRYCSLTFDVARIRIGLMLLFPKGRIIL 155
              P              ++       +    N Y  +  D +     L +       I 
Sbjct: 76  KVAPFAWDDNSVINKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNISNGSDDSIS 135

Query: 156 RDR--------------LWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEG 200
            D               L    +L  YQ+N  K+ + +   + +  + RE E L W S G
Sbjct: 136 FDESIEINKEKIQMLLILTHEKMLGLYQSNSDKNENRNPKIERDIFSPRENEILYWASVG 195

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT  EI++ILGI R+TV  +I +++RK        AI   +   ++
Sbjct: 196 KTYAEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|283783120|ref|YP_003373874.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|283441895|gb|ADB14361.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
          Length = 261

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N 
Sbjct: 198 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVFAYENG 257

Query: 245 IV 246
           +V
Sbjct: 258 LV 259


>gi|169796310|ref|YP_001714103.1| putative two-component response regulator protein [Acinetobacter
           baumannii AYE]
 gi|213156954|ref|YP_002318999.1| two component transcriptional regulator, LuxR family [Acinetobacter
           baumannii AB0057]
 gi|215483769|ref|YP_002325994.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|301344835|ref|ZP_07225576.1| response regulator [Acinetobacter baumannii AB056]
 gi|301513697|ref|ZP_07238934.1| response regulator [Acinetobacter baumannii AB058]
 gi|301596924|ref|ZP_07241932.1| response regulator [Acinetobacter baumannii AB059]
 gi|332851608|ref|ZP_08433557.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332866495|ref|ZP_08437037.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169149237|emb|CAM87119.1| putative two-component response regulator protein [Acinetobacter
           baumannii AYE]
 gi|213056114|gb|ACJ41016.1| two component transcriptional regulator, LuxR family [Acinetobacter
           baumannii AB0057]
 gi|213988921|gb|ACJ59220.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|332729836|gb|EGJ61170.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332734574|gb|EGJ65683.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 319

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A+
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAH 310


>gi|254393044|ref|ZP_05008206.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706693|gb|EDY52505.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 221

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++   L E   LA  
Sbjct: 82  HADVLEAVKSGATGYLLKSASTEELIDAVRRTADGDAVFTPGLAGLV---LGEYRRLAGE 138

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    +      K   LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 139 PA---PTPGGPEPKAPRLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 196 QLHNRVELVRYAIERGL 212


>gi|159902711|ref|YP_001550055.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9211]
 gi|159887887|gb|ABX08101.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9211]
          Length = 90

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 42/74 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D        L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MFSGDFANSGQMSLSAREMEIIDLVADGLTNQEIAQRLTISKRTVDNHVSNMFTKTGSKN 60

Query: 233 RSGAIAYAVRNNIV 246
           R   + +A+ +  +
Sbjct: 61  RVALLNWAMDHGKI 74


>gi|326331829|ref|ZP_08198116.1| putative LuxR-family regulator [Nocardioidaceae bacterium Broad-1]
 gi|325950326|gb|EGD42379.1| putative LuxR-family regulator [Nocardioidaceae bacterium Broad-1]
          Length = 973

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              R+ L+  L E+  L A       +          LT RE E LT ++ G+++ EI  
Sbjct: 881 TARRLGLQPLLDELRSLGATAVKQQPATSTA------LTPRESEILTLVAAGRSNGEIGK 934

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV+ ++++I+ K    +R+ A A A R  ++
Sbjct: 935 QLFISTKTVSVHVSNILGKLGAGSRTEAAAIARRQQLI 972


>gi|37223228|gb|AAQ90213.1| LuxR [Aliivibrio logei]
          Length = 232

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++            +  +T+ V   ++LL         K D  +  ++P    +   
Sbjct: 14  IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140
            +   KY  ++        P+   + EN        N              S     A  
Sbjct: 74  DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 133

Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
             G++      +    D L       I L+     + ++  ++   K + +LT RE ECL
Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            W  EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 194 AWACEGKSSWDISKILGCSVRTVTFHLTNAQMKLNTTNR 232


>gi|323358243|ref|YP_004224639.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323274614|dbj|BAJ74759.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 222

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 5/133 (3%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +     +     L   V  +  G  LL P+    +  R    G      A++
Sbjct: 94  FAALSAGASGFLLKNAGPEELVSAVRIVGAGDALLAPEVTRRVIARFASGGAPEP-AASV 152

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                +       LT RE E L  ++E  ++ EIA  L I   TV  +++++++K   + 
Sbjct: 153 RPPLSLAE----PLTERESEVLKLVAEALSNAEIAARLFIGEATVKTHVSNVLQKLGARD 208

Query: 233 RSGAIAYAVRNNI 245
           R  A+  A R+ +
Sbjct: 209 RVQAVVLAHRHGL 221


>gi|300088311|ref|YP_003758833.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528044|gb|ADJ26512.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 231

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +P    +L   + +  +L  +Q       D        LT RE + L  +++G T+ +IA
Sbjct: 124 YPINESLLNPTIAQR-VLRNFQE--LAEDDDGLDVVTPLTQRERQILIRVTDGLTNKQIA 180

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  T+ N+I++I+RK     R+ A   A+R   +
Sbjct: 181 TELKISEQTIKNHISAILRKLNANDRAHAAVLAIRRGYI 219


>gi|282861398|ref|ZP_06270463.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282564056|gb|EFB69593.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 226

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D  +  L   V  +  G  LL P+    +  RL  IG  A  + +
Sbjct: 92  VYEALAAGASGFLLKDATFPELLHGVRVVARGHALLAPE----ITQRL--IGEFARQRIS 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 V       LT REVE L  I+ G ++ +IA  L I+ +TV  +I  +  K   +
Sbjct: 146 CPPDRSVD-----GLTAREVEVLVLIARGLSNADIAARLSITDHTVKTHINRLFAKMGLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    +V
Sbjct: 201 DRAQAVILAYELGLV 215


>gi|264678688|ref|YP_003278595.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262209201|gb|ACY33299.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 223

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 76/185 (41%), Gaps = 19/185 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           L++  +L   + LD +         V+ + +S  ++              VF    +   
Sbjct: 58  LMIDLNLGDGEGLDLLELVQGTHPHVQSIIVSVTERDEK-----------VFQAFEKGAV 106

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                ++ +      V ++  G   + P     +      + L++  Q  +  + +    
Sbjct: 107 GYLLKNSWFGDYAQAVLQVANGGASITPSLAKKI------LSLVSRSQTYVVPASN--LS 158

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+ +L+ RE+E L  I+ G +S EI+  L IS  TV+ ++ ++ RK   KTR+ A+  A 
Sbjct: 159 KEEKLSEREIEILKLIACGYSSPEISTQLKISTMTVSTHVKNMYRKLQAKTRAHAVKAAS 218

Query: 242 RNNIV 246
              ++
Sbjct: 219 LRGLI 223


>gi|108805731|ref|YP_645668.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108766974|gb|ABG05856.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 781

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 40/81 (49%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AAY        +        LT RE+E L  + EG T  ++A  L +S  TVN ++ SI+
Sbjct: 700 AAYALEEGPRGEERGPAGAPLTPRELEVLRLVGEGMTDAQVAGRLFVSTRTVNAHLRSIL 759

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK   ++R+ A+  A    ++
Sbjct: 760 RKLGVRSRAAAVRLAQERGLL 780


>gi|326776281|ref|ZP_08235546.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656614|gb|EGE41460.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 222

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D  +  L   V  +  G  LL P+    +  RL  I      + +
Sbjct: 92  VYDALTAGASGFLLKDATFPELLHAVRVVAGGHALLAPE----ITGRL--IAEFTRQRVS 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 V       LT REVE L  I+ G ++ +IA  L I+ +TV  +I  +  K   +
Sbjct: 146 APPPRSVD-----GLTAREVEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    +V
Sbjct: 201 DRAQAVILAYERGLV 215


>gi|329940979|ref|ZP_08290259.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329300273|gb|EGG44171.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 255

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 4/138 (2%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++   L E   LAA 
Sbjct: 118 HADVLEAVKSGATGYLVKSASTEELVDAVRRTAAGDPVFTPGLAGLV---LGEYRRLAAE 174

Query: 169 QANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            A   +S +     +   LT RE E L  +++G +  +IA  L IS  TV N++ + + K
Sbjct: 175 PAPAPESGEAGETARAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGK 234

Query: 228 TATKTRSGAIAYAVRNNI 245
                R   + YA+   +
Sbjct: 235 LQLHNRVELVRYAIERGL 252


>gi|298249917|ref|ZP_06973721.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547921|gb|EFH81788.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 219

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 13/134 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  L          D     L   V +   G  +L P+             + A     
Sbjct: 93  IFPALRAGALSYVLKDVGPEELADTVRKAARGESVLHPR-------------VAARVVEE 139

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +  +         +L+ RE++ L  I++G ++ EIA  L IS  TV  ++++I+ K    
Sbjct: 140 LRGNRRDAPNPFTQLSDRELDVLRLIADGCSNSEIAQKLIISEKTVKGHVSNILGKLHMV 199

Query: 232 TRSGAIAYAVRNNI 245
            R+ A  +A +  +
Sbjct: 200 DRTQAAVFAWQQGL 213


>gi|262282221|ref|ZP_06059990.1| response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262262675|gb|EEY81372.1| response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 210

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 138 HIELHDDLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVV 197

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 198 YAFQHHLV 205


>gi|229102538|ref|ZP_04233243.1| Two-component protein Kinase [Bacillus cereus Rock3-28]
 gi|228680860|gb|EEL35032.1| Two-component protein Kinase [Bacillus cereus Rock3-28]
          Length = 592

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 91/252 (36%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLSTLLDRYEDIN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117
             +V      +Q +D +     P  ++  + + + D       + Q+   +   +F T  
Sbjct: 407 --VVGLAEDGDQAID-LCGRLQPHVVLMDLDMQQMDGVEATKKIKQQWPHIRVLIFTTFQ 463

Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +    +       + +   + +   +   + L+   G +I +    +I      Q +   
Sbjct: 464 DTKQALDSLRNGADGFLLKSIETLELANTIRLIHSGGTLIDQGMSHKI----FEQFDEQN 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G   + IA  L +S  TV NY +S   K   + + 
Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|57234205|ref|YP_181778.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224653|gb|AAW39710.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 232

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 10/176 (5%)

Query: 77  IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENI---TPPAGMDNRY 130
           +V S  P  LV  + +         Y V++R  +    +                    Y
Sbjct: 42  LVESLQPGVLVTDLMMGGMSGIEVTYQVVKRSPKTAVVILSMYGNEAYVHEALRAGARAY 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   +       R +    L E  + A  + +   +          LT RE
Sbjct: 102 VLKDSTSEELVRSVREAVQGHRYLSSP-LSEKAIEAYMEKSAEATS---LDPYETLTIRE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  +++G T  EIA  L IS  TV  + A++MRK   + ++  + YA++  I+
Sbjct: 158 REVLHLVAQGHTCAEIAERLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213


>gi|271963063|ref|YP_003337259.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506238|gb|ACZ84516.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 215

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 75/218 (34%), Gaps = 12/218 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + +++  D          AL +   A   + V  +     +   + +   P  ++  + +
Sbjct: 1   MIKIVLADDQALVRAGFRALLD---AQPGMTVVAEAADGAQAVRLAAEHEPDVVLMDIRM 57

Query: 93  SEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              D      +    P  +    F              + +     + A +   + ++  
Sbjct: 58  PGMDGLTATREMPPGPRIIILTTFELDEYVFEALRNGASGFLVKDTEPAELIQAVRVVAD 117

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208
              ++         L+A Y +        H  +D   LT RE E L+ +  G T+DEIA 
Sbjct: 118 GDALLSPGVTRR--LIAEYASRAKPP---HPSQDLGMLTDREREVLSLVGTGMTNDEIAG 172

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 173 KLFMSPATAKTHVSRTMMKLHARDRAQLVVIAYESGLV 210


>gi|298250780|ref|ZP_06974584.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548784|gb|EFH82651.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 223

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D     L   + ++  G+  + PK             LL  +   
Sbjct: 98  VFDAVKAGAMGYLLKDVPANELMATIRQVYSGVPSIQPKI---------ASKLLVEFGRK 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +      ++  L+ RE+E L  ++EG ++ +IA  L ++  TV N++++I+ K  T 
Sbjct: 149 ERSATPARPAQEETLSPREIEILKLLAEGASNRKIAEQLVLAEGTVKNHVSNILSKLHTG 208

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   A    ++
Sbjct: 209 NRTQAAHLARERKLL 223


>gi|196229817|ref|ZP_03128681.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226143|gb|EDY20649.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 210

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 13/168 (7%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
             P  ++  + L     +  +     E   P    +   I+   G ++ Y +L       
Sbjct: 51  HQPDVVLMDLRLPGMSGFEAIAALTKEF--PSAQAI--AISTYEGEEDIYRAL------- 99

Query: 141 RIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           ++G     PK      L + +  I    +Y   +  +         EL+ RE+E L  I 
Sbjct: 100 QLGARTYLPKSVLEKELAEAIRAIHGGGSYVPPLVAARLAERTHHRELSEREIEVLQRIV 159

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++ EIA  L I+  TV  ++ +I+ K   + R+ A   A++  IV
Sbjct: 160 KGLSNKEIAGHLFITEATVKLHVGNILTKLGVQDRTQASTVAIQRGIV 207


>gi|294630642|ref|ZP_06709202.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292833975|gb|EFF92324.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 223

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 3/143 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F       +      + +         +   +  +     ++         L
Sbjct: 77  PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGDLLTAIRAVHSGDAVVAPSTTRR--L 134

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L  +   +  +      K+ + LT RE E +T +++G ++ EIA  L +S  TV  ++  
Sbjct: 135 LDRFAPMLPTAGQGPQHKELQRLTEREREVMTLVAQGLSNGEIAARLVLSEATVKTHVGR 194

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R   +  A    +V
Sbjct: 195 ILTKLGLRDRVQVVVLAYETGLV 217


>gi|251787751|ref|YP_003002472.1| LuxR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536372|gb|ACT04993.1| transcriptional regulator, LuxR family [Dickeya zeae Ech1591]
          Length = 250

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 28/199 (14%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NIT 121
           D ++ S++P + V     +       V+        P F    +             N++
Sbjct: 43  DVVIISNYPPEWVDIYRSNNYQHIDPVILTAINKISP-FSWDDDLVISSKLKFSRIFNLS 101

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-----ILRDRLWEIGLLAAYQA------ 170
               + N Y  +  D       L  +  + R      I+++   ++ +L           
Sbjct: 102 KEYDIVNGYTFVLHDPGNNLATLSFMVEEHRSSELEEIIQNNRDKLQMLLISAHEKLTSL 161

Query: 171 NMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +   S + H  K  E    + RE E L W S GKT  EIA+ILGI+ +TV  +I ++++K
Sbjct: 162 HREMSRNRHNSKPQEADIFSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKK 221

Query: 228 TATKTRSGAIAYAVRNNIV 246
                   AI   V  N++
Sbjct: 222 LGVLNAKHAIRLGVEMNLI 240


>gi|284031067|ref|YP_003380998.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283810360|gb|ADB32199.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 4/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F              + +         I   +  +     ++  + +  + L
Sbjct: 80  PRVLVVTTFENDDYVYDALRAGASGFLLKRTPPDDIIAAIRTVAGSESLLFPEAIRGLAL 139

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             A Q    +         ++LT RE E L  +++G ++ EIA  L +   T+  ++A++
Sbjct: 140 AHAEQ----QPRQFTGLARYDLTEREQEVLRLMAKGLSNAEIATELVLGVQTIKTHVANL 195

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R+ A+  A  +  V
Sbjct: 196 LGKLGARDRTQAVILAYESGFV 217


>gi|192289851|ref|YP_001990456.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192283600|gb|ACE99980.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 308

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             +    +R+R   + L   G++   + L  +G   + +A         +  +F LT RE
Sbjct: 198 PKVPMKSSRLRNDELRLQYMGKLGPNEFLLRLGRDTSAEAP------TQFSAEFGLTSRE 251

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            E L W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R
Sbjct: 252 SEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294


>gi|329941026|ref|ZP_08290306.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329300320|gb|EGG44218.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 227

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 6/179 (3%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           ++   +V  D        +A +        L +   +    F      +       + + 
Sbjct: 46  ERAADVVLMDIRMPGTDGLAATRLISADPALAQVRVVMLTTFEVDEYVVQSLRAGASGFL 105

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----VHWGKDFELT 187
               +   +   + +      ++        GL+A + A      D    VH  +   LT
Sbjct: 106 GKGSEPEELLNAIRVAAGGEALLSPAATK--GLIARFLAQGDADEDGRDRVHAERLAALT 163

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 164 GREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMSKLGARDRAQLVFIAYESGLV 222


>gi|213970237|ref|ZP_03398368.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213925118|gb|EEB58682.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 185

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           ++ ++  L     +   +    +    +L+ REVE L W+++GKT + I  +LG++  TV
Sbjct: 97  KMSKLVRLTHACLSEIITLSPPYNPLEKLSTREVEVLKWVADGKTGEVIGKVLGVTERTV 156

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  +IM+K     ++ A   A    I+
Sbjct: 157 THHTVNIMQKLNATNKTAAAVKAALLGII 185


>gi|254443406|ref|ZP_05056882.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198257714|gb|EDY82022.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 224

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              K  +LT RE + L ++ +G+++ EIA  L +S  TV +++ S+  K   + R+ A  
Sbjct: 154 ERSKRQQLTERERDVLEYLIKGRSNKEIASSLYLSEETVKSHLKSLFAKLKVRDRTEAAI 213

Query: 239 YAVRNNIV 246
            A+R+ IV
Sbjct: 214 EAIRHGIV 221


>gi|313887441|ref|ZP_07821130.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923083|gb|EFR33903.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 201

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 3/161 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN-ITPPAGMDNRYCSLTFDVARIRIGLM 145
           V  + L    ++   +     +  P+   +  N    PAG +    ++  ++    +   
Sbjct: 35  VDLLDLDALRQHITFISPDIIIADPLLTGVQYNPDLLPAGKEPILVAINHNLLPEDLYKG 94

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             F     I    L  I L+   +    +S +    K   L+ RE E +TW++ G T+ E
Sbjct: 95  YSFVCLPTIEPQSL--IQLIQEAEQPDTESLESEEAKQTPLSQRECEVVTWVARGLTNKE 152

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L +S +TV  +  +I  K    + SG   YA+ NN++
Sbjct: 153 IADVLHLSPHTVVTHRRNIAAKLDIHSPSGLTIYALMNNLI 193


>gi|182436043|ref|YP_001823762.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464559|dbj|BAG19079.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 9/162 (5%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  +E      ++    +L   V+  L    +     D     L   V  +  G 
Sbjct: 68  EATRRITSAEGSAVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADELAHAVRVVAAGD 127

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            LL P              L+  +             +  ELT RE E LT I+ G ++ 
Sbjct: 128 ALLSPNITK---------RLIVEFSRTAGAPRPPLKARVGELTERETEVLTLIAGGLSNA 178

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI+  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 179 EISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESGLV 220


>gi|73539297|ref|YP_299664.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
 gi|72122634|gb|AAZ64820.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
          Length = 911

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKT 202
           L+   P    IL D   E G       +  + +  H   +  + + +E++ L  ++ G++
Sbjct: 806 LLETGPAILPILPDANSEAGQSLGAAVSQLRGWQAHPVRRRAQFSAKEMQVLALLASGQS 865

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  IA  L +S NTV  ++  I +K     R+GA++ A++  ++
Sbjct: 866 NKAIARGLDVSENTVKFHLKQIFQKFGVDNRAGAVSQAMQQGLL 909


>gi|253999547|ref|YP_003051610.1| LuxR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253986226|gb|ACT51083.1| transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4]
          Length = 265

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L+ RE+E + W+  GKT+ EI +IL IS  TV N++  I +K     R+ A++ 
Sbjct: 203 QLSSREIEIMEWVRNGKTNQEIGMILDISSFTVKNHLQRIFKKLDVLNRAQAVSK 257


>gi|239980581|ref|ZP_04703105.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291452439|ref|ZP_06591829.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355388|gb|EFE82290.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 228

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 2/142 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L    F              + +        ++  G+ ++     ++         L
Sbjct: 81  ARVLILTTFDLDEYVYQALRAGASGFLLKDASARQLAEGVRVVASGDALLAPGVTRR--L 138

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +     +      G+  ELT RE E L  I++G ++ EIA  L ++ +TV  +++ I
Sbjct: 139 ITEFSRLAERPQAPGPGQYGELTERETEVLVQIAQGLSNAEIADRLFVAESTVKTHVSRI 198

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K + + R+ A  +A    +V
Sbjct: 199 LVKLSLRDRTQAAVFAYEAGLV 220


>gi|119963933|ref|YP_949838.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119950792|gb|ABM09703.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 230

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 10/180 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKY------YNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
             V +  P  ++  + +   D         +       +    F       +      + 
Sbjct: 45  RQVEALQPDVVLMDVRMPGMDGIEATKQITDSGSDARVIILTTFDLDEYAFSGLQAGASA 104

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---EL 186
           +       + +   + L+   G  ++  R+ +  L    +  +   +     +D    EL
Sbjct: 105 FLLKDVAPSELVHAVRLVA-SGDAVVAPRVTQRLLETYVRGGVVPGHSPTSHRDPLLDEL 163

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E LT I+EG ++ EIA    +S  TV  ++  I+ K   + R   + YA    +V
Sbjct: 164 TPRETEILTTIAEGLSNAEIAHKFFLSEATVKTHVRRILSKLQLRDRVQVVVYAYETGLV 223


>gi|293603128|ref|ZP_06685562.1| autoinducer-binding transcriptional regulator BmaR5 [Achromobacter
           piechaudii ATCC 43553]
 gi|292818522|gb|EFF77569.1| autoinducer-binding transcriptional regulator BmaR5 [Achromobacter
           piechaudii ATCC 43553]
          Length = 120

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ R+  CL W + GKTS E + ILG+S +TVN ++ +   K   + R  A+  A+R  +
Sbjct: 55  LSDRQAACLYWSAAGKTSWETSRILGVSESTVNFHLRNACAKLGVRGRRAAVVSALRLGL 114

Query: 246 V 246
           +
Sbjct: 115 L 115


>gi|291300052|ref|YP_003511330.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569272|gb|ADD42237.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 73/209 (34%), Gaps = 5/209 (2%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +    +  +   +  + VG +   L+  +L ++   D +V  D     +  +  + +   
Sbjct: 14  VRAGFAALLNAQSDIDVVGEAANGLLALELSRQHHPD-VVLMDVRMPEMDGLEATRRLLG 72

Query: 99  YNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157
            N  + RP  L    F              + +         +   + ++     ++   
Sbjct: 73  GNETEYRPKVLMLTTFDIDDYIYEALRIGASGFLLKDSPPDDLTAAVRVIAAGEALLAPS 132

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
                 L+A + A               LT RE E LT I+ G ++ EIA  L ++  TV
Sbjct: 133 VTRR--LIAEF-ARTRPKATATSATLASLTDRETEILTLIARGLSNREIAGRLVVAEQTV 189

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++  I  K   + R+ A+  A    +V
Sbjct: 190 KTHVGRIFAKLGLRDRAQAVVCAYETGLV 218


>gi|229096445|ref|ZP_04227417.1| Two-component protein Kinase [Bacillus cereus Rock3-29]
 gi|228687007|gb|EEL40913.1| Two-component protein Kinase [Bacillus cereus Rock3-29]
          Length = 592

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 91/252 (36%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLSTLLDRYEDIN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117
             +V      +Q +D +     P  ++  + + + D       + Q+   +   +F T  
Sbjct: 407 --VVGLAEDGDQAID-LCGRLQPHVVLMDLDMQQMDGVEATKKIKQQWPHIRVLIFTTFQ 463

Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +    +       + +   + +   +   + L+   G +I +    +I      Q +   
Sbjct: 464 DTKQALDSLRNGADGFLLKSIETLELANTIRLIHSGGTLIDQGMSHKI----FEQFDEQN 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G   + IA  L +S  TV NY +S   K   + + 
Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|118468546|ref|YP_885876.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis
           str. MC2 155]
 gi|118169833|gb|ABK70729.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis
           str. MC2 155]
          Length = 220

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---D 127
           E+    IV  D     VR   +S  D    +L+R  E    +     +       +    
Sbjct: 50  EELDPDIVLCD-----VRMQGVSGLDLCQTLLERNPERKVVMLSVYDDEQYLFQALRVGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +     +   L         I       +   AA  A   +  +   G    LT
Sbjct: 105 AGYLLKSISSDDLVHQLEFAHSGETAIDP----VMAARAAGTAARLQRDEFWPGARQGLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L+++  G ++  IA  L I   TV  ++ SI RK     R+GA+A A+R  I
Sbjct: 161 QRESEILSFVVAGLSNRGIANKLVIGEETVKTHLRSIYRKLGVSDRAGAVATALREGI 218


>gi|91978329|ref|YP_570988.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91684785|gb|ABE41087.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 309

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           +L     L     +        +  +F LT RE E L W+S+GKT+ +IA ILG+S  TV
Sbjct: 219 KLGANEFLLRLARDTSTDSPREFATEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTV 278

Query: 218 NNYIASIMRKTATKTR 233
           + ++  I  K   + R
Sbjct: 279 DKHLEQIYAKLGVENR 294


>gi|326776667|ref|ZP_08235932.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657000|gb|EGE41846.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 225

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 9/162 (5%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  +E      ++    +L   V+  L    +     D     L   V  +  G 
Sbjct: 68  EATRRITSAEGSAVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADELAHAVRVVAAGD 127

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            LL P              L+  +             +  ELT RE E LT I+ G ++ 
Sbjct: 128 ALLSPNITK---------RLIVEFSRTAGAPRPPLKARVKELTERETEVLTLIAGGLSNA 178

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI+  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 179 EISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESGLV 220


>gi|149203939|ref|ZP_01880907.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           TM1035]
 gi|149142381|gb|EDM30426.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           TM1035]
          Length = 224

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 13/154 (8%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP-----KGRII 154
           N L+R  E F  +F    +      G+ +R  ++        +G + +       + +++
Sbjct: 74  NRLERGAE-FQTIFQAARD-----FGISDRGLTIPIHGPYGDVGGLSINRDCSEREWQLL 127

Query: 155 LRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +   +  +   A +  +M    D          L+ RE+E L W + GK+  +I  IL I
Sbjct: 128 ISGIIGNLQAAAVHMHDMVIQSDPLTRMLNTPSLSTREIEILQWTAAGKSQQDIGDILSI 187

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  ++ S  +K    T   AI  A+   ++
Sbjct: 188 SHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221


>gi|312137639|ref|YP_004004975.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311886978|emb|CBH46287.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 206

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 10/160 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +   +    +     E    VF T   +      +D              + 
Sbjct: 53  MDLALGTGIDGVEAIRRIRAARPEQPVLVFTTYDTDADVVRALDAGAI--------GYLL 104

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                P     +RD +    +L+   A+     D     D  LT RE E L+ ++EG T+
Sbjct: 105 KDSAPPDIFGAIRDAVAGRSVLSPPVASRV--LDRMRRPDQALTAREAELLSLLAEGLTN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E+   L IS  TV  ++A I  K    +R+ A++ A+R 
Sbjct: 163 KELGKRLFISEATVKTHLAHIYAKLGVDSRAAAVSIALRR 202


>gi|296128716|ref|YP_003635966.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296020531|gb|ADG73767.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 219

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 87  VRCMALSEKDKYYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           V+   +   +    ++  P      +    F+     +         Y   T    ++  
Sbjct: 58  VQMPDMDGLEATRRIVADPGLHAAVVVLTTFNREDYLVEALHAGAVGYLLKTSRPEQLTE 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            ++       ++  +      ++A   A    +          LT RE + L  ++ G  
Sbjct: 118 AVLSAAAGEGLLSPEVTR--AVIARAVAERRPARPA-PQPVVPLTEREQDVLALVARGLN 174

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +DEIA  L +SR TV  ++++++ K   + R  A+ YA  + +
Sbjct: 175 NDEIAAELVVSRATVKTHVSNLLAKLGLRDRVQAVVYAHEHGL 217


>gi|302552868|ref|ZP_07305210.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470486|gb|EFL33579.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 268

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D R   L   V  +  G  LL P     L ++    G      A 
Sbjct: 90  VYDALHAGASGFLLKDVRRDDLVHAVRVVAQGDSLLAPSVARRLVEQYTRPG------AA 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  D        LTGRE E L  ++ G ++ EIA  L +S +TV  ++ +++ K   +
Sbjct: 144 RPRRPDPRLDV---LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 201 DRIQAVICAYETGLV 215


>gi|224552981|gb|ACN54740.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+ 
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 201 LGTELRLL 208


>gi|182435647|ref|YP_001823366.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464163|dbj|BAG18683.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 222

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D  +  L   V  +  G  LL P+    +  RL  I      + +
Sbjct: 92  VYDALTAGASGFLLKDATFPELLHAVRVVAGGHALLAPE----ITGRL--IAEFTRQRVS 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 V       LT REVE L  I+ G ++ +IA  L I+ +TV  +I  +  K   +
Sbjct: 146 APPPRSVD-----GLTAREVEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    +V
Sbjct: 201 DRAQAVILAYERGLV 215


>gi|159044368|ref|YP_001533162.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912128|gb|ABV93561.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 243

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 3/155 (1%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +E  ++ + + + T L  P    L   +    G          ++    +G+       
Sbjct: 85  ATEPFRWSD-IAKLTPLTAPETDFLKRLLQQGLGDGLALQVFGPNMRNGYVGVGFASSDP 143

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             +    + E+   AA  A++     V       LT RE E L WI+ GK++  IA ILG
Sbjct: 144 D-LSGGDIRELQA-AAQAAHLRYCTLVPVATPEALTPREREVLGWIARGKSNSVIAEILG 201

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S +TV+  +  I  K     R+ A    +   ++
Sbjct: 202 VSPHTVDTLVRRIYGKLEVADRTTAAIRGIGAGLI 236


>gi|269128686|ref|YP_003302056.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313644|gb|ACZ00019.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 3/172 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  + +       +RP  +    F              + +     
Sbjct: 49  DVVLMDVRMPRVDGIEATRRIGALPAERRPRVIILTTFDLDEYAFAAIKAGASGFLLKDA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECL 194
             A++   +  +     ++         LL  +  ++         G    LT RE E L
Sbjct: 109 GPAQLIEAIRAVHSGDAVVAPSTTRR--LLDRFAVHLPDAEQQSAAGALAALTAREREVL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G ++ EIA  L +S  TV  ++  I+ K   + R  A+ +A    +V
Sbjct: 167 HLVARGLSNAEIAGRLHVSEATVKTHMGRILTKLGLRDRVQAVVFAYETGLV 218


>gi|87123599|ref|ZP_01079450.1| possible transcriptional regulator [Synechococcus sp. RS9917]
 gi|86169319|gb|EAQ70575.1| possible transcriptional regulator [Synechococcus sp. RS9917]
          Length = 92

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 40/66 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT  K R   + +A
Sbjct: 9   SPSIDLSTREIEIVELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGAKNRVALLNWA 68

Query: 241 VRNNIV 246
           + +  +
Sbjct: 69  MDHGKI 74


>gi|299533898|ref|ZP_07047264.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|298718125|gb|EFI59116.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 223

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 19/185 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           LL+  +L   + LD +         V+ + +S  ++              VF    +   
Sbjct: 58  LLIDLNLGDGEGLDLLELVQGTHPHVQSIIVSVTERDEK-----------VFQAFEKGAV 106

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                ++ +      V ++  G   + P    + +  L  +     Y             
Sbjct: 107 GYLLKNSWFGDYAQAVLQVANGGASITPS---LAKKILSLVSRSQTYVVPA-----SSLT 158

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+ +L+ RE+E L  I+ G +S EI+  L IS  TV+ ++ ++ RK   KTR+ A+  A 
Sbjct: 159 KEEKLSEREIEILKLIACGYSSPEISTQLKISTLTVSTHVKNMYRKLQAKTRAHAVKAAS 218

Query: 242 RNNIV 246
              ++
Sbjct: 219 LRGLI 223


>gi|197103145|ref|YP_002128523.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196480421|gb|ACG79948.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 252

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 6/159 (3%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +  +E   + ++  R   L       + E  +   G++    +    V      ++
Sbjct: 85  VREMLRSTEPLFWSDLPARRGALKPDEARVMEEARS--FGLNEGLMTPLHHVDGSVSAVL 142

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANM----FKSYDVHWGKDFELTGREVECLTWISEGK 201
           ++  +      D    + LL+ Y  ++     +  D    +  +L+ R++ECL W  EGK
Sbjct: 143 MMGERLASDAPDTRAALHLLSIYYGSLARKLRQRNDGGEPQKAKLSARQIECLRWAREGK 202

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +S  I  IL +S  TV+ ++AS  RK    TR  A+A A
Sbjct: 203 SSYVIGQILSLSARTVDEHLASACRKLGVHTRMQAVAQA 241


>gi|19554120|ref|NP_602122.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391773|ref|YP_227175.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21325708|dbj|BAC00329.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41327115|emb|CAF20959.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 212

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ +I  IL +S  TV +++  I  K   ++R+ A+A A    +
Sbjct: 152 LTPRELEVLKLVAGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGL 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 249

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 17/182 (9%)

Query: 81  DWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCS 132
           + P  ++  + + + D Y     +   P     PV          + I       + Y  
Sbjct: 66  NTPELVISDIMMPKVDGYQFLQQLRDDPRFKALPVVFLTARGMTSDRIQGYQAGCDAYLP 125

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGL--LAAYQANMFKSYDVHWGK-------D 183
             FD   +   +  L  +      D +    L  +A   A +    D   G         
Sbjct: 126 KPFDPDELVAIVQNLLERRAASSEDSVGSTELEKIAKQVAEIRAMLDQKNGIVQTPPPLR 185

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + T RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ +
Sbjct: 186 IDFTAREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEH 245

Query: 244 NI 245
            +
Sbjct: 246 GL 247


>gi|325266892|ref|ZP_08133563.1| nitrate/nitrite response regulator protein NarL [Kingella
           denitrificans ATCC 33394]
 gi|324981633|gb|EGC17274.1| nitrate/nitrite response regulator protein NarL [Kingella
           denitrificans ATCC 33394]
          Length = 224

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 8/148 (5%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML--------LFPKGRIILRD 157
            E    +    PE       +      LT  +     G +L        +    +    D
Sbjct: 66  RETLAQIMSVHPEQTVLMLTISEDGDDLTECMRLGARGYLLKNIHADFLIEAVKKAYHGD 125

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            ++   + A    ++ + +        ELT RE+E L  +S G ++  IA  L ++ +TV
Sbjct: 126 NIFSPEMTARLVQSLIRPHQPESTPLDELTARELEILGHLSAGHSNKIIARHLDLAESTV 185

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++ +I+RK    +R  A  YAV++NI
Sbjct: 186 KVHVQNILRKLELDSRVQAAVYAVQHNI 213


>gi|318058792|ref|ZP_07977515.1| two-component system DNA-binding response regulator [Streptomyces
           sp. SA3_actG]
 gi|318075476|ref|ZP_07982808.1| two-component system DNA-binding response regulator [Streptomyces
           sp. SA3_actF]
 gi|333026609|ref|ZP_08454673.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746461|gb|EGJ76902.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 218

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 6/146 (4%)

Query: 102 LQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
            +RP   L   V     + I         Y +   +   +   +  +  +G  +   RL 
Sbjct: 78  TERPVRFLALSVSDAAEDVIGVIRAGSRGYVTKAINGTELVAAIHRVN-EGDAVFSPRLA 136

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              +L A+  N     D    K   LT RE + L  I+ G +  EIA  L IS  TV ++
Sbjct: 137 GF-VLDAFSNNTVPPVDEELDK---LTQRERDVLRLIARGHSYKEIAKELFISVKTVESH 192

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +++++RK     R     +A    +V
Sbjct: 193 VSAVLRKLQLSNRHELTRWAAARRLV 218


>gi|78213914|ref|YP_382693.1| LuxR family transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198373|gb|ABB36138.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9605]
          Length = 92

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ 
Sbjct: 11  EISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 70

Query: 243 NNIV 246
           N  +
Sbjct: 71  NGKI 74


>gi|39934323|ref|NP_946599.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39648171|emb|CAE26691.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 308

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           +L     L     +        +  +F LT RE E L W+S+GKT+ +IA ILG+S  TV
Sbjct: 219 KLGPNEFLLRLGRDTSAEAPTQFSAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTV 278

Query: 218 NNYIASIMRKTATKTR 233
           + ++  I  K   + R
Sbjct: 279 DKHLEQIYAKLGVENR 294


>gi|291438083|ref|ZP_06577473.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340978|gb|EFE67934.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 235

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + + + D      +   +   P       F       +      + +         +  
Sbjct: 66  DVRMPKLDGVETTRRICADTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLA 125

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201
            +  +     ++         LL  +   +  +      K+ E LT RE E +  +++G 
Sbjct: 126 AIRAVHSGDAVVAPSTTRR--LLDRFAPMLPGTGKQPAHKELERLTEREREVMVLVAQGL 183

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 184 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 228


>gi|147678376|ref|YP_001212591.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274473|dbj|BAF60222.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 223

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I  G ++ EIA  L I+  TV  +++SI+ K     R+ A   A++ N+
Sbjct: 159 LTLREKEVLQLIVNGLSNKEIAGKLNITLRTVKAHVSSILMKLNVNDRTQAAVLAIQENL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|106879460|emb|CAJ20013.1| putative DNA binding regulatory protein [Streptomyces cattleya]
          Length = 225

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F++ R +A +  +     +    + F P        +         + S      R+   
Sbjct: 64  FEVARALARA-PETRSTGVVFLAQSFDPAL-----AVQGLMAGGRAFVSTGDPPRRLVTA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              +     ++    L +   L                    LTGRE+E L  ++ G ++
Sbjct: 118 ARAVAAGYAVLPPAVLADGPWLTGSGGAARPGAAPGVP---GLTGRELEVLRLMAAGMSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV ++++ ++ K   + RS AIA A R  +V
Sbjct: 175 AEIAGHLSLGEATVKSHVSRLLGKLGLRNRSQAIACAYRTGLV 217


>gi|116672676|ref|YP_833609.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116612785|gb|ABK05509.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 250

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 4/222 (1%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D L  +           ++  +   V     + VR  +    +    V+S     
Sbjct: 25  ILEGEDDLRIVGEASDGAEAIRQVREVDPDV---VLMDVRMPVLDGIEATRAVTSSGSHA 81

Query: 86  LVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            V  +   + D+Y    LQ     F        E ++    + +    +   V R  +  
Sbjct: 82  KVIILTTFDLDEYAFAGLQAGASAFLLKDVAPSELVSAVRVVASGDAVVAPRVTRRLLEA 141

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +       +   R       A    +              LT RE+E L  ++EG ++ 
Sbjct: 142 YVREGNPPAVNGQRAGTSAPAAGRGRHSLGEEQQRDPLLEALTPREMEMLEAMAEGLSNA 201

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA    +S  TV  ++  I+ K   + R  A+ YA    +V
Sbjct: 202 EIAHRFFLSEATVKTHVRRILAKLHLRDRVQAVVYAYETGLV 243


>gi|302538376|ref|ZP_07290718.1| predicted protein [Streptomyces sp. C]
 gi|302447271|gb|EFL19087.1| predicted protein [Streptomyces sp. C]
          Length = 516

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 3/157 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++   +   V      L    F      +         +         +   +  +   
Sbjct: 355 GVAATARLAEVRPGARVLALSTFDMDEYVVAALRAGACGFLPKDVSPEELIAAVRTVHTG 414

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVI 209
              +    L    LL+ Y     +            LT RE+E    ++ G  +  IA  
Sbjct: 415 EAAVAPRLLTR--LLSTYVRTAPREPRPAPATTPDGLTPRELEIWRLLARGLDNAAIAAE 472

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS +TV N+I ++  K   + R+ A+  A    +V
Sbjct: 473 LDISVSTVKNHITAVFGKLGVRDRAQAVIAAYETGLV 509


>gi|282860900|ref|ZP_06269966.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282564636|gb|EFB70172.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 231

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T   + +   +  +     +           L
Sbjct: 96  RFLALSVSDAAEDVIGVIRGGARGYVTKTITGSDLVDSVFRVQEGDAVFSP-------RL 148

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 149 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 208

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 209 VLRKLQLSNRHELTRWATARRLV 231


>gi|302553638|ref|ZP_07305980.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471256|gb|EFL34349.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 247

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +           L
Sbjct: 112 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSP-------RL 164

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 165 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 224

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 225 VLRKLQLSNRHELTRWATARRLV 247


>gi|297201227|ref|ZP_06918624.1| two-component system regulator [Streptomyces sviceus ATCC 29083]
 gi|197712910|gb|EDY56944.1| two-component system regulator [Streptomyces sviceus ATCC 29083]
          Length = 227

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P    I R  + E   L      
Sbjct: 97  VYEALRAGASGFLLKDASAEQLAEAVRVVAAGDALLAPG---ITRRLIAEFSRLDH---- 149

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       +  ELT RE E L  I++G ++ EIA  L ++  TV  ++  I+ K   +
Sbjct: 150 --RPRAPLKTRVGELTERETEVLALIAQGLSNAEIAGRLVVAEQTVKTHVGRILVKLGLR 207

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A  + +V
Sbjct: 208 DRTQAAVFAYESGLV 222


>gi|320532198|ref|ZP_08033064.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135576|gb|EFW27658.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 245

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQA 170
           F  L    +     D R   L   +  +  G  ++ P+    +  R+ E+    L +  A
Sbjct: 116 FAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPR----ITQRMLEMFAASLPSSDA 171

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
               S D        LT RE E L  +S+G ++ EIA  L +S  TV  ++ +++ K   
Sbjct: 172 PAQPSSDPRID---SLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLTKLDV 228

Query: 231 KTRSGAIAYAVRNNI 245
           + R  A+  A    +
Sbjct: 229 RDRVQAVVVAYETGL 243


>gi|297161250|gb|ADI10962.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 238

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++   L E   LA  
Sbjct: 105 HADVLEAVKSGATGYLLKSASTEDLLDAVRRTAAGEPVFTPGLAGLV---LGEYRRLATD 161

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A       V       LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 162 PAPAAPDRPVAP----RLTEREKEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 217

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 218 QLHNRVELVRYAIERGL 234


>gi|290958054|ref|YP_003489236.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647580|emb|CBG70685.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 297

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +           L
Sbjct: 162 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSP-------RL 214

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 215 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSA 274

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 275 VLRKLQLSNRHELTRWATARRLV 297


>gi|329296611|ref|ZP_08253947.1| LuxR family transcriptional regulator [Plautia stali symbiont]
          Length = 89

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + + RE+E L W +EGKTS EI +IL IS +TVN +  ++ ++     ++    YA    
Sbjct: 28  DFSQRELEILKWTAEGKTSAEICLILAISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIG 87

Query: 245 IV 246
           ++
Sbjct: 88  LI 89


>gi|21231619|ref|NP_637536.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768259|ref|YP_243021.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991396|ref|YP_001903406.1| Two-component system regulatory protein, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21113311|gb|AAM41460.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573591|gb|AAY49001.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167733156|emb|CAP51354.1| Two-component system regulatory protein, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 213

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L  ++ G ++ +I   LGIS  TV  ++ +I+ K   + R+ A+  A+R
Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGNALGISEETVKAHMKNILCKLGVRDRTHAVTVALR 205

Query: 243 NNIV 246
             I+
Sbjct: 206 RGIL 209


>gi|260061809|ref|YP_003194889.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea
           biformata HTCC2501]
 gi|88785942|gb|EAR17111.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea
           biformata HTCC2501]
          Length = 536

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I+ G T+   A  L IS  TV+ ++++I  K    +R  A   A+++ +
Sbjct: 472 LTLRELQVLRLIASGMTNKSAARELFISERTVDRHVSNIFDKLGVSSRVAATVVAIKHKL 531

Query: 246 V 246
           +
Sbjct: 532 I 532


>gi|294630991|ref|ZP_06709551.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292834324|gb|EFF92673.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 244

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +RP   L   V     + I    G    Y + T   A +   +  +     +        
Sbjct: 105 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGADLVDSIFRVQEGDAVFSP----- 159

Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              LA +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +
Sbjct: 160 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVES 217

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++RK     R     +A    +V
Sbjct: 218 HVSAVLRKLQLSNRHELTRWATARRLV 244


>gi|239940280|ref|ZP_04692217.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986761|ref|ZP_04707425.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291443713|ref|ZP_06583103.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346660|gb|EFE73564.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 214

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 16/169 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D     L+R  EL  P        F      +       + Y     
Sbjct: 52  PDVVLMDIKMPGTDG-IEALRRLRELDNPAKVLIVTSFTEQRTVVPALRAGASGYVYKDV 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++  +     G L A +     +       +     RE E L 
Sbjct: 111 DPDALAGAIRSVHAGHVLLQPEV---AGALLAQEDTGTGTGRGSTLTE-----REREVLG 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 163 LIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 211


>gi|239929757|ref|ZP_04686710.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 224

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + + + D      +   +   P       F       +      + +         +  
Sbjct: 55  DVRMPKLDGVETTRRICADTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201
            +  +     ++         LL  +   +  +      K+ E LT RE E +  +++G 
Sbjct: 115 AIRAVHSGDAVVAPSTTRR--LLDRFAPMLPGTGKQPAHKELERLTEREREVMVLVAQGL 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|260436694|ref|ZP_05790664.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109]
 gi|260414568|gb|EEX07864.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109]
          Length = 92

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 43/72 (59%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D     +  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R 
Sbjct: 3   SLDGADPLEISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRV 62

Query: 235 GAIAYAVRNNIV 246
             + +A+ N  +
Sbjct: 63  ALLNWAMDNGKI 74


>gi|145296944|ref|YP_001139765.1| hypothetical protein cgR_2844 [Corynebacterium glutamicum R]
 gi|140846864|dbj|BAF55863.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 212

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ +I  IL +S  TV +++  I  K   ++R+ A+A A    +
Sbjct: 152 LTPRELEVLKLVAGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGL 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|325675545|ref|ZP_08155229.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|325553516|gb|EGD23194.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 224

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 2/141 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V     + I         Y + T   A +  G+  +     +    RL    +
Sbjct: 85  PVCLALSVSDAAEDVIAVIRAGARGYVTKTISGAELADGVRRVAGGDAVFSP-RLAGF-V 142

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L ++             +   LT RE+E L  ++ G T  EIA  L IS  TV  + +++
Sbjct: 143 LDSFTGRSNAPEPPLDPELDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNV 202

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           +RKT    R+    +A R  I
Sbjct: 203 LRKTQQSNRNALTRWAHRRRI 223


>gi|224552939|gb|ACN54712.1| PagR [Pantoea agglomerans pv. gypsophilae]
 gi|224552942|gb|ACN54714.1| PagR [Pantoea agglomerans pv. gypsophilae]
          Length = 210

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+ 
Sbjct: 141 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 201 LGTELRLL 208


>gi|330828126|ref|YP_004391078.1| putative csgAB operon transcriptional regulatory protein [Aeromonas
           veronii B565]
 gi|328803262|gb|AEB48461.1| Probable csgAB operon transcriptional regulatory protein [Aeromonas
           veronii B565]
          Length = 215

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L+    +I+L +      LL        +        D  LT RE E + ++  G ++ E
Sbjct: 111 LVAGLQKILLGEYWMPRHLLCELVEYYRQGNSYLQRNDTLLTAREQEIIRYLMTGASNVE 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           IA  L +S +TV +++ ++ +K   K R  A+++A
Sbjct: 171 IADSLFVSEHTVKSHLYNVFKKLNVKNRIQAVSWA 205


>gi|297190315|ref|ZP_06907713.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150449|gb|EDY66317.2| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 283

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 78/255 (30%), Gaps = 41/255 (16%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL------------ 74
           P R     R             +  +T     +    +R  L  +Q+L            
Sbjct: 29  PPRWQARRRTADGRFRWPTGRVVRRVTTLWHMTT--PIRVVLADDQRLVRAGFRSILDDE 86

Query: 75  DSIVSSDWPFDLVRCMALSE--------------------KDKYYNVLQRPTELFCPVFH 114
           D I       D V  + L+                       +     +R +E+   +  
Sbjct: 87  DDIEVVGEAADGVEAVRLAGELLPDIVLMDIRMPEEDGLAATRRITGDERLSEVKVLILT 146

Query: 115 TLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           T   +      +    + +     +   +  G+ +      +I         L+A +   
Sbjct: 147 TFDMDDYVFNALYAGASGFLVKDTEPMELLHGIRVCSRGDALIAPKVTRR--LIAEFTNR 204

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +         +   LT RE E L  +  G T+DEIA  L +S  T   +++ IM K   +
Sbjct: 205 IRHPDPSP--RLNALTAREHEVLGLVGAGLTNDEIARRLVLSPATAKTHVSRIMSKLGAR 262

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A  + ++
Sbjct: 263 DRTQLVITAYESGMI 277


>gi|289641792|ref|ZP_06473950.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508436|gb|EFD29377.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 402

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 3/142 (2%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
               + +   ++       L   +     +D            +R    L      I   
Sbjct: 254 HRGELAEFDRDILAVFAEGLGYALERAVLLDR---LAQMRTEMLRYTAGLAATMNDIEEP 310

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R    G+   +   +   +D  W  D  LT RE++ L  ++ G T+  IA  L IS  T
Sbjct: 311 IRFGAYGMNHGFAQPVRPFHDTPWPADSRLTRREIDVLRLMAAGNTNARIADRLIISEGT 370

Query: 217 VNNYIASIMRKTATKTRSGAIA 238
           V +++  I+RK    +R+ A++
Sbjct: 371 VKSHVKHILRKLNAASRTEAVS 392


>gi|297191334|ref|ZP_06908732.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720655|gb|EDY64563.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 220

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                       H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I R
Sbjct: 140 NRMHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIAR 199

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K  T  R+G +A A+R  I+
Sbjct: 200 KLGTGDRAGMVAVALRTGII 219


>gi|296130230|ref|YP_003637480.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022045|gb|ADG75281.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 239

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 10/170 (5%)

Query: 87  VRCMALSEKDKYYNVLQR-------PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           VR   +   +    ++ R       P  +    F      +       + +         
Sbjct: 66  VRMPTMDGLEATERIVARGTDDAPAPRVIVLTTFDLDEYVLAAIRAGASGFLLKDAPPEE 125

Query: 140 IRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +   +  +     +I      RL E  + A        + D       +LT RE E L  
Sbjct: 126 MLAAIRTVHRGDAVIAPSSTRRLLEHLVTALPGDAPAATADPAHQAVAQLTEREREVLVL 185

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G+++ EI   L ++  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 186 MARGRSNTEIGQDLFVAEATVKTHVGRILAKLGARDRVQAVVVAYEAGLV 235


>gi|88854587|ref|ZP_01129254.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88816395|gb|EAR26250.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 538

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 56/120 (46%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           D  +  LT   A +             +  + L E+            +       + +L
Sbjct: 419 DEAHTRLTLAEALLATTDESAAQHHLALATEVLTELSADDDLALARRLATAAGAPPEGQL 478

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  +S+G ++ EIA  L +S +TV+ ++A+I+ K    +R+GA +YA++  ++
Sbjct: 479 SARELEVLRLVSQGLSNPEIAASLVLSEHTVHRHVANILTKLDQTSRTGAASYAIQAGLL 538


>gi|291451125|ref|ZP_06590515.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354074|gb|EFE80976.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 223

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 12/175 (6%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYC 131
            P  ++  + + E D      +          RP  +    F              + + 
Sbjct: 44  HPDIVLMDVRMPEMDGLTATRELLSPEPGTAHRPKVIMLTTFDVDDYVYEALHAGASGFL 103

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A +   + ++     ++          +        +       +   LT RE 
Sbjct: 104 LKDSPPASLVSAVRVIHGGNALLDPAVTRRF--IEDIVRRRPRPRRDPRLQLNGLTPRET 161

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G ++ EIA  L ++  TV  +I+ I+ K   + R+ A+  A  + +V
Sbjct: 162 EVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESGLV 216


>gi|239931777|ref|ZP_04688730.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 182

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 5/137 (3%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++   L E   LA+ 
Sbjct: 48  HADVLEAVKSGATGYLLKSASTEELQEAVRRTAAGDPVFTPGLAGLV---LGEYRRLASE 104

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A   +  D    K   LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 105 PAGPAQGDD--GSKAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 162

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 163 QLHNRVELVRYAIERGL 179


>gi|297191947|ref|ZP_06909345.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197723328|gb|EDY67236.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           LF   R   + R      +A+   +  ++      +   L+ RE E L  +++G ++  I
Sbjct: 120 LFTAVRAAAQGRTVLSPAVASRLVSHVRAPAAPGSE--GLSAREREVLELVAKGTSNRAI 177

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 178 ARELFISEATVKTHLTHVFGKLGAKDRAAAVALAYERGIL 217


>gi|239825761|ref|YP_002948385.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239806054|gb|ACS23119.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. WCH70]
          Length = 199

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D     +  LT  E+  L  ISE KT+ EI+ +L ISR TV ++++SI+RK    +R 
Sbjct: 127 PIDRLSNYNSPLTKIELNILQLISEDKTNTEISELLNISRRTVEHHVSSILRKLDVDSRV 186

Query: 235 GAIAYAVRNNIV 246
           GA+  A++  I+
Sbjct: 187 GAVVKAMKLGIL 198


>gi|159898124|ref|YP_001544371.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891163|gb|ABX04243.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 207

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANMFKSYDVHWGKDF 184
            + Y     +       L    P+        ++E    L +   A + K       +D 
Sbjct: 86  TDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYEGGAALQSGIAARVLKRLATEPAED- 144

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE++ L  +  G+++  IA+ L IS NT+ ++++ I  K   ++R+ A+A A++  
Sbjct: 145 ELSQRELDVLQLLVRGESNKAIALSLNISENTIKSHVSHIFSKLDVRSRAEAVAVALQRG 204

Query: 245 IV 246
           +V
Sbjct: 205 LV 206


>gi|326381911|ref|ZP_08203604.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199337|gb|EGD56518.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 221

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 12/146 (8%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V     + I         Y + T D   +   +  +     +           
Sbjct: 82  PVFLALSVSDAATDVIATIRAGARGYVTKTIDGGELADAVRRVAEGDAVFSP-------R 134

Query: 165 LAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           LA +  + F           +     LT RE+E L  ++ G T  EIA  L IS  TV  
Sbjct: 135 LAGFVLDSFTGRSPVPEPQLDPELDSLTRREMEVLRLLARGYTYREIAEELFISVKTVET 194

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245
           + ++++RKT    R+    +AV   I
Sbjct: 195 HASNVLRKTQQSNRNALTRWAVNRQI 220


>gi|299137698|ref|ZP_07030879.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600339|gb|EFI56496.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 207

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 21/170 (12%)

Query: 83  PFDLVRCMALSEKDKY---YNVLQRPTELFCPVF---HTLPENITPPAGMDNRYCSLTFD 136
           P  +V  + L     +     + + P      V    H   +           Y +    
Sbjct: 50  PDVVVLDLRLPRISGFDVITTLRKAPRPARIVVLSNYHGSEDIYRAVRSGAMGYLTKDAS 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +    R + R  L  +                      ELT RE E L  
Sbjct: 110 GEELINAIQTVDRDLRYLPRLALDRLA---------------ERTPAVELTPREREVLIC 154

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G+++ EIA  L I+  TV  +++S++ K   + R+ A  YA++  +V
Sbjct: 155 ITQGRSNREIAEQLHIAEKTVRIHVSSVLDKMGARDRTQATIYALQRGLV 204


>gi|288553881|ref|YP_003425816.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288545041|gb|ADC48924.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 211

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 42/89 (47%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           +      ++      +    D    K   LT RE E L  +++G+++ E+A +L I   T
Sbjct: 122 ESKVHSKVMKYVLTRISHKEDEEEAKVKRLTKREKEVLIELAKGRSNKELADVLHIKEKT 181

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  +I++I+ K     R+ A  +A+R  I
Sbjct: 182 VKTHISNILSKLELSDRTQAALFAMRMGI 210


>gi|226310595|ref|YP_002770489.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093543|dbj|BAH41985.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 209

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 9/151 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +   +    + +        V  +  ++      ++    S     +R           
Sbjct: 59  GIGGVEATRRIRESCPSSKVIVLTSFIDDEKVYPVIEAGAFSYLLKTSRAA-------EI 111

Query: 151 GRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            + I      E  L +     +     +        +LT RE+E L  I +GK++ EIA 
Sbjct: 112 AKAIRSAAAGEPVLESRVAGKIMARFRHGQESHPHEQLTPRELEVLKLIGQGKSNQEIAD 171

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L I   TV  ++++I+ K   + R+ A  Y
Sbjct: 172 ELIIGIKTVKTHVSNILAKLNVEDRTQAAIY 202


>gi|312140819|ref|YP_004008155.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311890158|emb|CBH49476.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 224

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 2/141 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V     + I         Y + T   A +  G+  +     +    RL    +
Sbjct: 85  PVCLALSVSDAAEDVIAVIRAGARGYVTKTISGAELADGVRRVAGGDAVFSP-RLAGF-V 142

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L ++             +   LT RE+E L  ++ G T  EIA  L IS  TV  + +++
Sbjct: 143 LDSFTGRSNAPEPPLDPELDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNV 202

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           +RKT    R+    +A R  I
Sbjct: 203 LRKTQQSNRNALTRWAHRRRI 223


>gi|300866500|ref|ZP_07111190.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300335457|emb|CBN56350.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 241

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  + + LT RE+E L  I +G ++  IA  L I+  TV  ++ +I+ K     R+ A 
Sbjct: 172 SHIIETYPLTERELEVLELIVQGYSNAAIAEKLYITVGTVKTHVRNILNKLCADDRTQAA 231

Query: 238 AYAVRNNIV 246
             A+R+ +V
Sbjct: 232 VLALRSGLV 240


>gi|290961078|ref|YP_003492260.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260650604|emb|CBG73720.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 8/184 (4%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L +E++ D +V  D        +A +        L R   +    F      +       
Sbjct: 43  LAKEERAD-VVLMDIRMPGTDGLAATRLISADPTLTRVRVVILTTFEVDDYVVQSLRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----K 182
           + +     +   +   + +      ++        GL+A + A    S D   G     +
Sbjct: 102 SGFLGKGAEPEELLNAIRVAAGGDALLSPTATK--GLIARFLAQPDDSADGDRGAARSER 159

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LTGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  + +A  
Sbjct: 160 LATLTGREREVLVQVAGGLSNDEIAERLEVSPLTVKTHVNRGMAKLGARDRAQLVVFAYE 219

Query: 243 NNIV 246
           + +V
Sbjct: 220 SGLV 223


>gi|86158419|ref|YP_465204.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774930|gb|ABC81767.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 218

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 13/135 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L   ++      +    L   +  +  G ++L P+   + R  + E G  A  +A+
Sbjct: 93  VRRLLKAGVSGYVLKKSAGAELANAIRAVHRGGLVLDPE---VARTAMEEAGPAAPGEAD 149

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            ++S          LT RE + L  ++EG+++ E+A +LGIS  T  ++   +M K    
Sbjct: 150 PYES----------LTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREHVMEKLGVH 199

Query: 232 TRSGAIAYAVRNNIV 246
            R+  + +A+R  ++
Sbjct: 200 NRTELVRFAIRKGVI 214


>gi|68536744|ref|YP_251449.1| two-component system response regulator TcsR7 [Corynebacterium
           jeikeium K411]
 gi|68264343|emb|CAI37831.1| two-component system response regulator TcsR7 [Corynebacterium
           jeikeium K411]
          Length = 227

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 6/191 (3%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK------YYNVLQRPTELFCPVFHT 115
           + VRW     Q+   +  S     ++  + +   D         +       +    F  
Sbjct: 27  ITVRWQAADGQEACELAESQPVDIILMDVQMPRMDGIEATRQVVSGDSGARVIVLTTFDN 86

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
               +       + +     D   +   +  +     +I       +      +    + 
Sbjct: 87  DNYVLGAVEAGASGFLLKDTDPEDLISAVRTVGDSAAVISPKATARLLRSIRMEQTPQRR 146

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V       LT RE+E L  I+ G ++ EIA  L IS  TV  ++  ++ KT ++ R  
Sbjct: 147 EPVELDLPDPLTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVH 206

Query: 236 AIAYAVRNNIV 246
            + +A ++++V
Sbjct: 207 VVLFAFKHHLV 217


>gi|84494899|ref|ZP_00994018.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649]
 gi|84384392|gb|EAQ00272.1| hypothetical protein JNB_08874 [Janibacter sp. HTCC2649]
          Length = 937

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R+ +     L   +       D        LT RE+E L  ++EG ++ +++  L I+ N
Sbjct: 843 REAVATASQLRTPRLRGRVGLDGPHSGPEGLTFRELEVLRLVAEGLSNRQLSERLFITEN 902

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV N++ SI++KT    R+ A  YA  + ++
Sbjct: 903 TVTNHVRSILQKTGVANRTMAARYAAEHGLL 933


>gi|298247591|ref|ZP_06971396.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550250|gb|EFH84116.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 14/193 (7%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITP 122
           D      + ++V    P  +V  + +   D     L+R       +   +  T  E+   
Sbjct: 37  DAADGAAVIAVVERVQPDVVVMDIRMPGMDG-LAALERIRTMWPHITVLLLTTYDEDELL 95

Query: 123 PAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF------ 173
             G+    + Y      V  +   +        +I  + +  +   A   +         
Sbjct: 96  IRGLQAGASGYFLKETPVETLLDAIRSAARGEMLIQPETMARLLSHATSVSPALSVSRSQ 155

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                       LT RE + L  +++G+ S EIAV LGI+  TV  Y+ SI  K    +R
Sbjct: 156 HPQGAGISGSIALTKRERQVLAGVAQGERSKEIAVRLGITERTVRAYLTSIYTKLNVDSR 215

Query: 234 SGAIAYAVRNNIV 246
           + A+A A+   ++
Sbjct: 216 ASAVAVALAYGLL 228


>gi|297562938|ref|YP_003681912.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847386|gb|ADH69406.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 231

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 5/161 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            LS      +       +    F T    +         +         +   +  +   
Sbjct: 62  GLSATRSLVSSGADCRVVILTTFDTDEYVVEGVEAGAAGFLLKNTPPEELLEAVRTVHRG 121

Query: 151 GRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +I       +      LL    +               LT RE E L  ++ G T+ E
Sbjct: 122 DSVISASSTRRLLGHVRPLLGGPSSRPVPIDGDTRRAVASLTPREQEVLVAVALGYTNTE 181

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   L +S  TV  ++  ++ KT ++ R  A+ +A R  +V
Sbjct: 182 ICERLVLSMPTVKTHVGHVLAKTGSRDRVQAVLFAFRAGLV 222


>gi|291456580|ref|ZP_06595970.1| putative two-component regulator [Bifidobacterium breve DSM 20213]
 gi|291381857|gb|EFE89375.1| putative two-component regulator [Bifidobacterium breve DSM 20213]
          Length = 268

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N +
Sbjct: 208 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 267

Query: 246 V 246
           V
Sbjct: 268 V 268


>gi|85708570|ref|ZP_01039636.1| two-component transcriptional regulator, LuxR family protein
           [Erythrobacter sp. NAP1]
 gi|85690104|gb|EAQ30107.1| two-component transcriptional regulator, LuxR family protein
           [Erythrobacter sp. NAP1]
          Length = 236

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 42/109 (38%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           AR              +  + +  I  L+            H      L+ REVE LTW 
Sbjct: 126 ARDAYASFDFLKHVDDVAPESIGMIRSLSQVAHQRVVILVEHKLDAPALSEREVEVLTWA 185

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK+   IA IL IS +T   Y   I  K     R GA+  A+R  +V
Sbjct: 186 ARGKSLSAIATILDISPDTAKTYSKRIYAKLDVSDRVGAVVKALRMGLV 234


>gi|332671033|ref|YP_004454041.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332340071|gb|AEE46654.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 237

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 3/145 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWE 161
           P  +    F      +       + +         +   +  +     +I      RL E
Sbjct: 89  PRIIVLTTFDLDEYVLAAIRAGASGFLLKDAPPEEMLAAIRTVHHGDAVIAPSSTRRLLE 148

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             + A        + D       +LT RE E L  +++G+++ EI   L ++  TV  ++
Sbjct: 149 HLITALPPDAPGAAADPARRAVADLTEREREVLVLMAKGRSNTEIGQDLFVAEATVKTHV 208

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             I+ K   + R  A+  A    +V
Sbjct: 209 GRILAKLGARDRVQAVVTAYETGLV 233


>gi|254777627|ref|ZP_05219143.1| hypothetical protein MaviaA2_23561 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 218

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 72/211 (34%), Gaps = 11/211 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  +        F++V      ++ + + V++  P  +V  + +   D  
Sbjct: 13  VDDQDLVRSGLRRILRR--KDGFVIVAECADGDE-VPAAVAAHRPDVVVMDLRMRRVDGI 69

Query: 98  --YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                +   P  L    F+               +         +   +  +      + 
Sbjct: 70  EATRRLGGTPPVLALTTFNEDELLSAALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLD 129

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                 +  L  Y      +         ELT RE++ LT I +G ++ EIA  L IS  
Sbjct: 130 PAVTSRV--LTTY---RKAAPGPRGAAIAELTTRELDVLTLIGKGLSNSEIADELCISGV 184

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV ++I  I  K   + R+ AI YA  N IV
Sbjct: 185 TVKSHIGRIFGKLDLRDRAAAIVYAYDNGIV 215


>gi|297201836|ref|ZP_06919233.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717312|gb|EDY61346.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 241

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +           L
Sbjct: 106 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSP-------RL 158

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 159 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 218

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 219 VLRKLQLSNRHELTRWATARRLV 241


>gi|153837454|ref|ZP_01990121.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|149749254|gb|EDM60039.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|328470183|gb|EGF41094.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 217

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D  ++ +GL  +      + RD L +  L+    +      ++    + ELT RE++ L+
Sbjct: 110 DFDKVMMGLKGILNGENWLSRDILNQ--LIGHLLSLNNTVGELETKLEMELTRREMQVLS 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + +G ++ +IA  L +S +TV +++ SI RK   K R  AI +A RN
Sbjct: 168 ALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215


>gi|85708110|ref|ZP_01039176.1| two-component response regulator [Erythrobacter sp. NAP1]
 gi|85689644|gb|EAQ29647.1| two-component response regulator [Erythrobacter sp. NAP1]
          Length = 217

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 70/215 (32%), Gaps = 10/215 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV--RCM 90
             R++ +D        + A+    G     L        +   S+V      D+     +
Sbjct: 3   APRILIVDDHQLAREGLRAVLAGDGMEVVGLASTGEEAVELAGSLVPDVILMDVRLGDGI 62

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-DNRYCSLTFDVARIRIGLMLLFP 149
              E  +    L  P ++     H +P  +          Y     ++  +R  +  +  
Sbjct: 63  DGLEATRQVVALGLPIKVVMLTLHEMPGYVREALAAGAAGYVLKDTEIGDLRAAINQVMA 122

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               +  D       L +         +        LT RE E +  ++EG T+ EIA  
Sbjct: 123 GQSALPLD-------LVSAAMRAENRPEPKGDLSQILTSREQEVVELVAEGLTNKEIARK 175

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L IS  TV  ++  ++ K     R+ A   AV+  
Sbjct: 176 LDISPATVKVHVERLIGKLGVADRTQAAVMAVKLK 210


>gi|329948078|ref|ZP_08294979.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523217|gb|EGF50318.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 244

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +     D R   L   +  +  G  ++ P+    +  R+ E  + A    N 
Sbjct: 116 FAGLRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPR----VTQRMLE--MFAPSLPNS 169

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                    +   LT RE E L  +S+G ++ EIA  L +S  TV  ++ +++ K   + 
Sbjct: 170 GAPTQASDPRIDSLTPREKEILVLMSQGLSNAEIADHLVVSATTVKTHVGNVLAKLDVRD 229

Query: 233 RSGAIAYAVRNNI 245
           R  A+  A    +
Sbjct: 230 RVQAVVVAYETGL 242


>gi|307332414|ref|ZP_07611482.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306881948|gb|EFN13066.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 240

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 10/147 (6%)

Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +RP   L   V     + I    G    Y + T     +   +  +     +        
Sbjct: 101 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDAIFRVSEGDAVFSP----- 155

Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              LA +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +
Sbjct: 156 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVES 213

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++RK     R     +A    +V
Sbjct: 214 HVSAVLRKLQLSNRHELTRWATARRLV 240


>gi|85059718|ref|YP_455420.1| transcriptional activator [Sodalis glossinidius str. 'morsitans']
 gi|84780238|dbj|BAE75015.1| transcriptional activator [Sodalis glossinidius str. 'morsitans']
          Length = 240

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 81/243 (33%), Gaps = 30/243 (12%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYAL---TEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           P+  D +  +  +    +  + +  +   ++    ++F++ + D        + + SD+P
Sbjct: 4   PSDKDYMLFINQMKK--NIKLYLSHIFNDSDLFTFAYFMMNKDD-----GQPAFMISDYP 56

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCP------------VFHTLPENITPPAGMDNRYC 131
              +         K   V+      F P             F+ +  +     G      
Sbjct: 57  AGWLNQYRNYGYQKIDPVMLIACRKFTPFSWKNNPNMPDQNFYKMSSDYALDNGYTFTLH 116

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN--------MFKSYDVHWGKD 183
               ++A + I  M        I+     +  +L                +       + 
Sbjct: 117 DPDNNLATLTISQMKQNAVFYDIIEKEKDKFQMLLITTHEKVIRFFDARKEQGSESEEEP 176

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L W S GKT +EI+ IL I   TV  +I +I+ K        AI  A+  
Sbjct: 177 CRLSPREKEVLFWASVGKTYNEISTILSIREGTVKFHIRNIINKLGVANAKHAITRAMEL 236

Query: 244 NIV 246
            ++
Sbjct: 237 KLL 239


>gi|332162143|ref|YP_004298720.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|1723596|sp|P54295|YENR_YEREN RecName: Full=Transcriptional activator protein yenR
 gi|773400|emb|CAA53694.1| yenR [Yersinia enterocolitica]
 gi|318606195|emb|CBY27693.1| quorum-sensing transcriptional activator YpeR [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325666373|gb|ADZ43017.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330864049|emb|CBX74127.1| transcriptional activator protein yenR [Yersinia enterocolitica
           W22703]
          Length = 244

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 81/230 (35%), Gaps = 29/230 (12%)

Query: 44  SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
                +    +  G   +      + ++  L   + S++P D V+    +       V+ 
Sbjct: 14  DIKNYIQRRIKTYGDLCY--SYLVMNKKTPLHPTIISNYPLDWVKKYKKNSYHLIDPVIL 71

Query: 104 RPTELFCPVF--------HTLPENITPPAGMD----NRYCSLTFDVARIRIGLMLLFPKG 151
              +   P              ++       +    N Y  +  D +     L +     
Sbjct: 72  TAKDKVAPFAWDDNSVINKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNISNGSD 131

Query: 152 RIILRDRLWEI--------------GLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
             I  D   EI               +L  YQ+N  K+ + +   + +  + RE E L W
Sbjct: 132 DSISFDERIEINKEKIQMLLIITHEKMLGLYQSNSDKNENRNTQIERDIFSPRENEILYW 191

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S GKT  EI++ILGI R+TV  +I +++RK        AI   +   ++
Sbjct: 192 ASVGKTYAEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|317492389|ref|ZP_07950818.1| luxR family bacterial regulatory protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919728|gb|EFV41058.1| luxR family bacterial regulatory protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 215

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 4/166 (2%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D + ++ + FDL+          + + L R  +    +    P++            S  
Sbjct: 48  DPVDNTLYLFDLMEA-DRRTTVLWQSELSRCRQRNRILLLNTPDDYQNQDIESWPNISAV 106

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
           F  +        L    + +++   +    +A+Y  +    Y  H  +   LT RE E L
Sbjct: 107 FYPSMDE---RTLTEGIKSVIKGECFFSQGVASYLISQSSHYRYHSPEATGLTQREKEIL 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  G ++ EIA +L IS NTV  ++ ++ +K + K R+ A+++A
Sbjct: 164 NKLRAGASNTEIAKLLFISENTVKTHLYNLFKKISVKNRTQAVSWA 209


>gi|37521252|ref|NP_924629.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212248|dbj|BAC89624.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 210

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           SD   R++  D        + A+ +   A   + V  +    ++  +      P   +  
Sbjct: 3   SDATIRILIADDHPVVRQGLAAMIDRQAA---MRVVAEAADGREAVTRYREHLPDVALMD 59

Query: 90  MALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           + +   D    ++   +E      +    + T  +           +         +   
Sbjct: 60  LRMPAMDGVEAIVAIRSEFPDSRIIVLTTYDTDEDIYRGLRAGAMAFLLKEAPTEELVEA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + I +        +AA  AN           + ELT RE+E L  + +G+T+
Sbjct: 120 IRAVHAGHKRIPQ-------QVAAKLANRL--------SNPELTARELEVLHLVVKGQTN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I   TV  ++ +I+ K     R+ A   A+R  +V
Sbjct: 165 KEIAASLFIGEGTVRAHMNNILAKMGAHDRTQAATLAIRRGLV 207


>gi|325916009|ref|ZP_08178302.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537819|gb|EGD09522.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 213

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L+ ++ G ++ +I   L IS  TV  ++ +I+ K   + R+ A+  A+R
Sbjct: 146 DDALSARETEVLSLVATGCSNKQIGNALSISEETVKAHMKNILAKLGVRDRTHAVTVALR 205

Query: 243 NNIV 246
             I+
Sbjct: 206 RGIL 209


>gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 231

 Score = 94.3 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 31/210 (14%)

Query: 67  DLFQEQKLDSIVSSD----W-------PFDLVRCMALSEKDKY---YNVLQRPTELFCPV 112
           D  QE      V+S+    W       P  ++  + + + D Y     + + P     PV
Sbjct: 20  DYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVDGYQFLKQLREDPRFQSLPV 79

Query: 113 FHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE------ 161
                + +T           + Y    FD   +   +  L  +     +    E      
Sbjct: 80  VFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENLLIRRNSKPQKTTEEGETPDI 139

Query: 162 ------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                 I  + A                 +LT RE   L  ++EG  + EIA  L  S  
Sbjct: 140 AELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLVAEGLMNKEIARRLETSVR 199

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 200 NVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|257057888|ref|YP_003135720.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587760|gb|ACU98893.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 216

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 7/158 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             S  D    +     +    V     E+   +       + Y   +  VA +   +   
Sbjct: 59  DTSGVDATRAITNELPDTRVLVLSASGEHNDVLQAVKAGASGYLVKSASVAELVDAVRRT 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                +         G++      M  S D+       LT RE E L  +++G T+ +IA
Sbjct: 119 AEGDPVFTAG---LAGMVLGEYRRMADSPDM-GDPPPRLTERETEVLRLVAKGLTAKQIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS  TV N++ S +RK     R     YA+ + +
Sbjct: 175 DRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 212


>gi|332299624|ref|YP_004441545.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176687|gb|AEE12377.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 201

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 2/125 (1%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            PAG +    ++  ++    +     F     I    L  I L+   +    +S +    
Sbjct: 71  LPAGKEPILVAINHNLLPEDLYKGYSFVCLPTIEPQSL--IQLIQEAEQPDTESLESEEA 128

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE E +TW++ G T+ EIA +L +S +TV  +  +I  K    + SG   YA+
Sbjct: 129 KQTPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSPSGLTIYAL 188

Query: 242 RNNIV 246
            NN++
Sbjct: 189 MNNLI 193


>gi|254442066|ref|ZP_05055542.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256374|gb|EDY80682.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 220

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D     L   +  +  G   L P    I    L E   ++   A 
Sbjct: 93  VFEALKAGSSGYLLKDTPSKQLVEAIRAVSSGESFLQPS---IASKVLAEFSRMSGPAAV 149

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 +       L+ RE + L W+S G ++ EIA  L ++  TV N++++++ K    
Sbjct: 150 KKAPVQLRE----PLSQREEQVLVWLSRGCSNKEIASHLDLAEGTVKNHVSNVLGKLGVL 205

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   A    +V
Sbjct: 206 DRTQAALMARDLGLV 220


>gi|37523973|ref|NP_927350.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214979|dbj|BAC92345.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 229

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I EG+++ +IA  L I+  TV  ++ +I+ K     R+ A   A+R  
Sbjct: 167 PLTERELEVLQLIVEGRSNQDIADQLYITVGTVKTHVRNILSKLCADDRTQAAVTALRAG 226

Query: 245 IV 246
           +V
Sbjct: 227 LV 228


>gi|320334192|ref|YP_004170903.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755481|gb|ADV67238.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 211

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 17/182 (9%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR-----PTELFCPVFHTLPENITPPAG 125
           E+ L+ +        +V  + L   D      +         +     H L E +     
Sbjct: 41  EEALERL-PHAHAHVVVLDIGLPGMDGVETAARVKAAFPALRIVMLTAHQLREEVFAALA 99

Query: 126 -MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + YC  + D A + + +         +          +A     + ++ D   G+  
Sbjct: 100 SGADAYCLKSGDPALLPLAIQAAAAGSAYLDP-------QVAHLVLGVVRAPD---GEVS 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  +++G ++ EIA  LG+S +TV  ++  I+ K +   R+ A   A+R  
Sbjct: 150 ALSDRETEVLRRVADGLSNKEIARDLGVSVSTVKVHVQDILTKLSASDRTHAAVKALRAG 209

Query: 245 IV 246
           ++
Sbjct: 210 LL 211


>gi|270262679|ref|ZP_06190950.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043363|gb|EFA16456.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 950

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                 + RL + G L   +  +  S+DV+WG    L+ RE++ L  I+EG+T+ +IA  
Sbjct: 858 CNEQGAQLRLADKGALTGERL-LQSSHDVYWG----LSERELQVLRLIAEGQTNKDIARS 912

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  ++ +   K    +R+ A++ A+   ++
Sbjct: 913 LAISAQTVKWHLKNTYAKLNVNSRTQAMSRALEMKLL 949


>gi|88798765|ref|ZP_01114348.1| two-component system regulatory protein [Reinekea sp. MED297]
 gi|88778528|gb|EAR09720.1| two-component system regulatory protein [Reinekea sp. MED297]
          Length = 224

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 79/227 (34%), Gaps = 9/227 (3%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           + +      +++ +D        + +L    G  H  +V      E+ L  +++   P  
Sbjct: 1   MSSEDKATIKVMLVDDQNLVREGIKSLLNLAG--HITIVGEAGDGEEALT-VMTELQPDV 57

Query: 86  LVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           ++  + + + D    V     +      +    F      ++        +      +  
Sbjct: 58  VLMDIRMPKMDGITAVKTMKEQNIDIPVIILTTFDDHELVLSGIRAGARGFLLKDVSLEA 117

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +     +I       +           +S          LT RE+E L  ++ 
Sbjct: 118 LVEAIDTVSSGDTLIQPAVTERVIKGFTELQKEGQSKVEKEPVQDPLTQREIEILRLMAG 177

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EI+  +  S  T+ N++++I+ K   + R+ A+  A+   ++
Sbjct: 178 GYSNKEISRAIFKSEGTIKNHVSNILAKLGVRDRTRAVLKALELGVI 224


>gi|297158992|gb|ADI08704.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 228

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +R G  LL P     L +R           A 
Sbjct: 93  VYAALSAGASGFLLKDVTPEHLVAAVRMVRSGDALLAPAITRRLVER----------YAR 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++G ++ E+A  L +S  TV  ++A I+ K   +
Sbjct: 143 RDPDTSALHRDLAALTPREAEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLGLR 202

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 203 DRVQAVVVAYETGLV 217


>gi|302535180|ref|ZP_07287522.1| two component system response regulator [Streptomyces sp. C]
 gi|302444075|gb|EFL15891.1| two component system response regulator [Streptomyces sp. C]
          Length = 225

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 3/145 (2%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           Q P  +    F       +      + +       A +   +  +     ++        
Sbjct: 75  QHPKVIILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLAAIRSVHSGDAVVAPSTTRR- 133

Query: 163 GLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            LL  +   +  +      K+ E LT RE E +  +++G ++ EIA  L +S  TV  ++
Sbjct: 134 -LLDRFAPMLPTTAAEPENKEIERLTDREREVMLLVAQGLSNGEIAARLVLSEATVKTHV 192

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             I+ K   + R   +  A    +V
Sbjct: 193 GRILTKLGLRDRVQVVVLAYETGLV 217


>gi|205372669|ref|ZP_03225480.1| hypothetical protein Bcoam_04270 [Bacillus coahuilensis m4-4]
          Length = 223

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L+ + +G  + EIA  L I+  TV N++++I+ K   + R+ A  YAVR+ I
Sbjct: 158 LTEREWGVLSELGKGLNNREIAEALYITEGTVKNHVSNIISKLEVRDRTQAAIYAVRHGI 217


>gi|182415183|ref|YP_001820249.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842397|gb|ACB76649.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 212

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 13/160 (8%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +R   +S  D    +      +   V+            +               + L  
Sbjct: 63  LRMHGMSGVDAIRALRSEFGNVRVLVYSNYAAGEEVYQALKAGASGFVV----KEMALER 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R +     +    +A        +         +L+ RE++ L  +++G+++ EI
Sbjct: 119 LLEAIRKVHAGEQYVPPEIAMRMGERLMA---------QLSPRELDVLKLVAKGRSNKEI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +   T   ++A+I+ K     R+ AI  AVR  I+
Sbjct: 170 AAELHVVEGTAKIHVANILTKLGVSDRTQAIVVAVRRGII 209


>gi|289649319|ref|ZP_06480662.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 247

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           + +  ++ S++P   ++    S       +++       P F     N       D+   
Sbjct: 52  RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAAQGVETDDFLK 111

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   + +     R+ E        L  +   + K
Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQKDFDQRIREKAADIQMSLIRFHDRLIK 171

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H         +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   
Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231

Query: 231 KTRSGAIAYAVRNNIV 246
           +T   A+  A+   +V
Sbjct: 232 RTAKQAVYKAINMGMV 247


>gi|28900213|ref|NP_799868.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365852|ref|ZP_05778348.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|260880775|ref|ZP_05893130.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260896515|ref|ZP_05905011.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|28808524|dbj|BAC61701.1| putative transcriptional regulator, LuxR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308089272|gb|EFO38967.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092579|gb|EFO42274.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308114985|gb|EFO52525.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
          Length = 217

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 10/181 (5%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-TLPENITP 122
           V     +++   +IV S  P        L E  +  + L+             L      
Sbjct: 44  VNLPSTRDEHYVAIVDSSLP-------ELPEVKQTLSELEHVDATVLVNAEPNLRIESLL 96

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                        D  ++ +GL  +      + RD L +  L+    +      ++    
Sbjct: 97  TWSNLKGLFYFEDDFDKVMMGLKGILNGENWLSRDILNQ--LIGHLLSLNNTVGELETKL 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE++ L+ + +G ++ +IA  L +S +TV +++ SI RK   K R  AI +A R
Sbjct: 155 EMELTRREMQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKR 214

Query: 243 N 243
           N
Sbjct: 215 N 215


>gi|239940608|ref|ZP_04692545.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987090|ref|ZP_04707754.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 233

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           LT  V     G  +  P    ++   L E   LA+ 
Sbjct: 101 HADVLEAVKSGATGYLLKSASTQELTDAVRSTAAGDPVFTPGLAGLV---LGEYRRLASD 157

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A +         K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 158 PAPVA----SDEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 213

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 214 QLHNRVELVRYAIERGL 230


>gi|291444045|ref|ZP_06583435.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346992|gb|EFE73896.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 214

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           LT  V     G  +  P    ++   L E   LA+ 
Sbjct: 82  HADVLEAVKSGATGYLLKSASTQELTDAVRSTAAGDPVFTPGLAGLV---LGEYRRLASD 138

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A +         K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 139 PAPVA----SDEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 194

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 195 QLHNRVELVRYAIERGL 211


>gi|290955347|ref|YP_003486529.1| two-component system regulator [Streptomyces scabiei 87.22]
 gi|260644873|emb|CBG67959.1| putative two-component system regulator [Streptomyces scabiei
           87.22]
          Length = 236

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 5/164 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIG 143
           VR   +   +    +          V  T P++           + +        R+   
Sbjct: 64  VRMPGIDGIEATARIAAAGPAARVLVLTTFPDDTYVWRALRAGASGFLLKRTAPERLIDA 123

Query: 144 LMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +  +     +I       +    +   +     +          LT RE + L  I+EG 
Sbjct: 124 VRTVAAGDTLIDPSVTRALVEHFVLGERTARGPADAADLAGLRGLTAREAQVLRLIAEGL 183

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ E+A +LGI+ +T   ++  ++ K   + R+ A+  A R+ +
Sbjct: 184 SNAELAELLGIAESTAKTHVKRVLHKIGARDRAQAVVLAYRSGL 227


>gi|227505299|ref|ZP_03935348.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198097|gb|EEI78145.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 217

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 6/161 (3%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           M              P  L   V     + I         Y +       +   +  +  
Sbjct: 57  MPDGGGLAVLRGAPGPVYLALSVSDAAEDVIALIRAGARGYVTKNISGPELAAAVRRV-H 115

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSD 204
           +G      RL    L A     + +S      +  +     LT RE+E L  ++ G T  
Sbjct: 116 EGDAYFSPRLAGFVLDAFASGALAESKPGAPDESVDPAVDALTRRELEVLRLLARGYTYR 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EI   L IS  TV  + ++I+RKT    R     +A  +++
Sbjct: 176 EIGERLFISVKTVETHASNILRKTQQSNRHQLTRWAASHDL 216


>gi|170728356|ref|YP_001762382.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC
           51908]
 gi|169813703|gb|ACA88287.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Shewanella woodyi ATCC 51908]
          Length = 896

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 70/187 (37%), Gaps = 13/187 (6%)

Query: 55  YVGASHFLLVRWDL----FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           YV A+H+L          + ++     + ++   D V+ + +    ++    ++      
Sbjct: 712 YVIANHYLSRNMSNQALSYSQKLSLLALENNQKIDQVKALGIQCLSQFSTGNEKKAFRLV 771

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
                L        G    +  L   +  + + L L   + ++       E   L  +  
Sbjct: 772 TQMLELAS----QVGCKQVFFELPNHIEALLLKLNLHSDENQLSS-----EGNRLLTWLI 822

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +  K         + L+ RE +    +S+G T+ +I+  LGIS NTV  ++ ++ +K   
Sbjct: 823 SELKKSHQAQNNPWHLSSREQQICPLLSQGFTNKQISTTLGISENTVKFHLKNLFQKLGV 882

Query: 231 KTRSGAI 237
             R  A+
Sbjct: 883 INRQQAV 889


>gi|6716341|gb|AAF26601.1|AF110468_3 PsyR [Pseudomonas syringae pv. tabaci]
          Length = 246

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 20/195 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           + +  ++ S++P   ++    S       +++       P F    E  +     D    
Sbjct: 52  RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREAECCSGRRTDDFLKR 111

Query: 132 SLTFDVARIRI-----------GLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFKS 175
           S  + ++                L L   + +     R+ E        L  +   + K+
Sbjct: 112 SAKYQLSSGATFTLHDASWLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKT 171

Query: 176 YDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              H         +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +
Sbjct: 172 RAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVR 231

Query: 232 TRSGAIAYAVRNNIV 246
           T   A+  A+   +V
Sbjct: 232 TAKQAVYKAINMGMV 246


>gi|21222055|ref|NP_627834.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256786856|ref|ZP_05525287.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289770751|ref|ZP_06530129.1| two-component system regulator [Streptomyces lividans TK24]
 gi|4753864|emb|CAB42027.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
 gi|289700950|gb|EFD68379.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 228

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +          L    F              + +        ++   + ++   
Sbjct: 70  GIEATRRITTATPEIRVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAG 129

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++       +    +   +  ++      +  ELT RE E L  I++G ++ EIA  L
Sbjct: 130 DALLAPGITRRLIAEFSRLDDRPRAP--LKARVGELTERETEVLALIAQGLSNAEIAQRL 187

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 188 VVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 223


>gi|311106149|ref|YP_003979002.1| transcriptional regulator DegU [Achromobacter xylosoxidans A8]
 gi|310760838|gb|ADP16287.1| transcriptional regulatory protein DegU [Achromobacter xylosoxidans
           A8]
          Length = 223

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
             L +        +    +LT  + R   G  ++       L ++      LAA      
Sbjct: 93  QALRDGARGYLVKNIDADALTAAIRRAAGGEPVIAESMTAKLVEQFRGQASLAAQAPQAA 152

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S + H      LT RE + + W++ G ++  IA  L +S +TV  ++ ++++K    +R
Sbjct: 153 GSAERHR-----LTARETQIVQWLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSR 207

Query: 234 SGAIAYAVRNNI 245
                YAV + +
Sbjct: 208 VQVAVYAVEHGL 219


>gi|254410364|ref|ZP_05024143.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182570|gb|EDX77555.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 212

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G  + EIA  L IS+ TV N+I +I+ +   + R+ A  +A  ++
Sbjct: 150 ELTPREQEILRLIATGANNREIAQTLYISQKTVKNHITNILSRLNLRDRTQAAIWANSHS 209

Query: 245 I 245
           I
Sbjct: 210 I 210


>gi|29830013|ref|NP_824647.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607123|dbj|BAC71182.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +           L
Sbjct: 108 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSP-------RL 160

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 161 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 220

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 221 VLRKLQLSNRHELTRWATARRLV 243


>gi|224552978|gb|ACN54738.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+ 
Sbjct: 141 HQKKNVFLSPRERQILKWVXAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 201 LGTELRLL 208


>gi|308235176|ref|ZP_07665913.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 240

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L + +       +  + 
Sbjct: 97  VMAAIHTGASGFLLKDTEPETLLNSIRTVYQGNAIIAPTATKRLIESMISKPSNESIASE 156

Query: 172 MFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
              + +    K           +LT RE E L  I+ G ++ EIA  L IS  TV  ++A
Sbjct: 157 EENTENASRSKQNANAYNSYLNDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVA 216

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+ K   + R  A+ +A  N +V
Sbjct: 217 HILGKIDARDRVQAVVFAYENGLV 240


>gi|294628934|ref|ZP_06707494.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292832267|gb|EFF90616.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 226

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 12/224 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +  R++  D           L +       VG +        L +EQ+ D +V  D    
Sbjct: 1   MTIRVLLADDQALLRSAFRVLVDSEPDMEVVGEASEGAAAVRLAREQRAD-VVLMDIRMP 59

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +A +        L     +    F      +       + +     +   +   + 
Sbjct: 60  GTDGLAATRMISADPALAHVRVVILTTFEVDDYVVQALRAGASGFLGKGSEPEELLSAIR 119

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKT 202
           +      ++    +   GL+A + A             G+   LT RE E L  ++ G +
Sbjct: 120 IAAQGEALLSP--VATKGLIARFLAQGDADDGRDPARSGRLEALTVREREVLVQVAGGHS 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 178 NDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 221


>gi|159897512|ref|YP_001543759.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890551|gb|ABX03631.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 213

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 43/80 (53%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A  A + +  D    K  +LT RE+E L  ++EG T+ +IA  L IS  TV ++  +IM 
Sbjct: 132 ALIAKLNQLGDSDTVKLADLTDRELEVLKLVAEGLTNRQIAAQLVISVKTVQSHRTNIME 191

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K     R+  + YA+R  ++
Sbjct: 192 KLDLHDRTDLVKYAIRRGMI 211


>gi|238064365|ref|ZP_04609074.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237886176|gb|EEP75004.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 228

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 6/183 (3%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D  +E + D IV  D     V  +  +E       L     L    F             
Sbjct: 42  DRAREHRPDVIVM-DVRMPGVDGLTATETICADPDLTGTRVLILTTFENDEHVARALRAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK---SYDVHWGKD 183
            + +         +   +  +     ++         L++ + A       +        
Sbjct: 101 ASGFLGKYVTTDALLEAIRTVATGESLLSPGATK--ALISQFLATPPPNTAAPQPTTPGI 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E +   ++GK++DEIA  L +S  TV  +I   M K   + R+  +  A +N
Sbjct: 159 RDLTNREREAMKLAADGKSNDEIARELNLSALTVRTHIQRAMTKLGARDRAQLVVLAYKN 218

Query: 244 NIV 246
            +V
Sbjct: 219 GLV 221


>gi|297201415|ref|ZP_06918812.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713823|gb|EDY57857.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 3/143 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F       +      + +         +   +  +     ++         L
Sbjct: 77  PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLTAIRSVHSGDAVVAPSTTRR--L 134

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L  +   +  +      K+ E LTGRE E +  +++G ++ EIA  L +S  TV  ++  
Sbjct: 135 LDRFAPMLPTTGKEPQHKELERLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGR 194

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R   +  A    +V
Sbjct: 195 ILTKLGLRDRVQVVVLAYETGLV 217


>gi|58533128|gb|AAW78919.1| ExpR [Erwinia amylovora]
          Length = 240

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + + RE+E L W +EGKTS EI++IL IS+NTVN +   + ++     ++   +YA   
Sbjct: 178 LDFSERELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAV 237

Query: 244 NIV 246
            ++
Sbjct: 238 GLI 240


>gi|302537555|ref|ZP_07289897.1| two-component system response regulator [Streptomyces sp. C]
 gi|302446450|gb|EFL18266.1| two-component system response regulator [Streptomyces sp. C]
          Length = 220

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                     H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK 
Sbjct: 142 MHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKL 201

Query: 229 ATKTRSGAIAYAVRNNIV 246
            T  R+G +A A+R  I+
Sbjct: 202 GTGDRAGMVAVALRTGII 219


>gi|239979247|ref|ZP_04701771.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 227

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 12/175 (6%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYC 131
            P  ++  + + E D      +          RP  +    F              + + 
Sbjct: 48  HPDIVLMDVRMPEMDGLTATRELLSPEPGTAHRPKVIMLTTFDVDDYVYEALHAGASGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A +   + ++     ++          +        +       +   LT RE 
Sbjct: 108 LKDSPPASLVSAVRVIHGGNALLDPAVTRRF--IEDIVRRRPRPRRDPRLQLNGLTPRET 165

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G ++ EIA  L ++  TV  +I+ I+ K   + R+ A+  A  + +V
Sbjct: 166 EVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESGLV 220


>gi|297203085|ref|ZP_06920482.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197712083|gb|EDY56117.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 220

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                     H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK 
Sbjct: 142 MHRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKL 201

Query: 229 ATKTRSGAIAYAVRNNIV 246
            T  R+G +A A+R  I+
Sbjct: 202 GTGDRAGMVAVALRTGII 219


>gi|223939339|ref|ZP_03631218.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891943|gb|EEF58425.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 220

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L+ ++ GK++ EI V L IS  TV +++ SI  K    +R+ AIA A R  +
Sbjct: 157 LTSRELAVLSLLALGKSNKEIGVKLYISETTVKSHLRSIFAKLNVISRTEAIATASRRGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|253577576|ref|ZP_04854888.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843045|gb|EES71081.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 227

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 5/154 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++  +    V  R  ++   +  +  E+      ++    S           +  L   
Sbjct: 74  GMNGAEATKEVRSRFPDMKIVILTSFLEDDLVVQAVEAGAVSYVLKTVSAEELIYALQGA 133

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            R +        G +A       +   V  G D  +T RE E L  I+EGK++ +IA  L
Sbjct: 134 YRGMP----VMTGEVAQALTRGLRQRTVQ-GDDSGMTEREKEVLLLIAEGKSNKDIAEEL 188

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IS  TV  ++++++ K   + R+    YA R  
Sbjct: 189 HISIKTVKTHVSNLLMKCELEDRTQLAIYAHRQG 222


>gi|226359681|ref|YP_002777459.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226238166|dbj|BAH48514.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 219

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F      +       + +         +   +  +     ++         LL+ +  + 
Sbjct: 85  FDLDEHAMGALRAGASGFLLKDTPSEDLVSAIRSVAAGDAVVSPKVTRR--LLSRFLDDG 142

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                     D  LT RE E L  ++ G ++ EIA  L +S +T+ +++  I+ K   + 
Sbjct: 143 PAPLRDPEVLDV-LTEREREVLQLVATGLSNTEIAAQLFLSESTIKSHVGRILTKLNVRD 201

Query: 233 RSGAIAYAVRNNIV 246
           R  A+  A    +V
Sbjct: 202 RVQAVVLAYETGLV 215


>gi|300787377|ref|YP_003767668.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796891|gb|ADJ47266.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 215

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D +LT RE+E +  ++ G+++  IA  L +S  TV  ++  I RK     R+ A++ A
Sbjct: 147 SPDPDLTTREIEVIRLLASGRSNRAIAEALFLSEATVKTHLVRIYRKLGADNRAAAVSEA 206

Query: 241 VRNNIV 246
           VR  ++
Sbjct: 207 VRRGLL 212


>gi|187926842|ref|YP_001893187.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|241665171|ref|YP_002983530.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728596|gb|ACD29760.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|240867198|gb|ACS64858.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 218

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 82/220 (37%), Gaps = 11/220 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D    +   +  L +    S F +V       + +  +     P  ++  + 
Sbjct: 1   MTIRILLIDDHTLFRSGIRLLLQR--QSDFEVVDEAADGLEGIK-LAKRHQPDVILLDLN 57

Query: 92  LSEKDK--YYNVLQRPTELFCPVFHTLPENITPPAGM----DNRYCSLTFDVARIRIGLM 145
           +          +L +   L   V  T+ E               Y     +   +  G+ 
Sbjct: 58  MPGLSGLETLQLLVQDLPLAAVVVLTVSEEADELKAALRDGARGYLLKNIEAETLVAGIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                G  ++ DR+    L+A ++A               LT RE E +  ++ G+++ E
Sbjct: 118 R-AAAGEPVISDRMT-AKLVAHFRAPEKAPPAATTPMPDRLTPREREIVKGLARGESNKE 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L ++ +TV  ++ ++++K    +R     YAV + +
Sbjct: 176 IARTLDVAESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGL 215


>gi|298491629|ref|YP_003721806.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233547|gb|ADI64683.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 238

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + + LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K     R+ A   A+
Sbjct: 173 EPYSLTERELEVLQLIVEGYSNAVIAQRLFITIGTVKTHVRNILNKLCADDRTQAAVRAL 232

Query: 242 RNNIV 246
           R+ IV
Sbjct: 233 RSGIV 237


>gi|239929935|ref|ZP_04686888.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438269|ref|ZP_06577659.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341164|gb|EFE68120.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 220

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  +L P    I R  + E   LA     
Sbjct: 90  VYEALRAGASGFLLKDASADQLAEAVRVVAAGDAMLAPG---ITRRLIAEFSRLA----- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       +  +LT RE E L  I+ G ++ EIAV L ++  TV  ++  I+ K   +
Sbjct: 142 -PEPRTPLKERVGDLTERETEVLALIARGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A  + +V
Sbjct: 201 DRTQAAVFAYESGLV 215


>gi|226365679|ref|YP_002783462.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244169|dbj|BAH54517.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 219

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 2/141 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V     + I         Y + T   A +  G+  +     +    RL    +
Sbjct: 80  PVCLALSVSDAAEDVIAVIRAGARGYVTKTISGAELADGVRRVAGGDAVFSP-RLAGF-V 137

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L ++             +   LT RE+E L  ++ G T  EIA  L IS  TV  + +++
Sbjct: 138 LDSFTGRSNAPEPQLDPELDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNV 197

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           +RKT    R+    +A R  I
Sbjct: 198 LRKTQQSNRNALTRWAHRRRI 218


>gi|28453859|gb|AAO43546.1| transcriptional activator CinR [Rhizobium etli CFN 42]
          Length = 246

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 24/191 (12%)

Query: 63  LVRWDLFQEQKLDSIV----SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-P 117
           + R+ L     +D I+    S   PFD  R + ++E  +          +     H +  
Sbjct: 65  VSRYLLNDYINVDPIIREGFSRQLPFDW-REIDITETAQ--------EFMVDAELHGIGT 115

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             ++ P    +R   L+ +  +      L+    R  L + L E+G L     +    ++
Sbjct: 116 NGVSVPIVDKSRRSLLSINSQKSDEEWTLI---ERQFLPEWL-ELGFL----LHRKAVFE 167

Query: 178 VHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +H   D    L  RE+ECL W S GK S +I  ILG+S +T   Y+ S   K    T S 
Sbjct: 168 LHGENDPVPALGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSA 227

Query: 236 AIAYAVRNNIV 246
           AIA+AV  N++
Sbjct: 228 AIAHAVHLNLI 238


>gi|297626942|ref|YP_003688705.1| Two-component system, regulatory protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922707|emb|CBL57284.1| Two-component system, regulatory protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 219

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 8/213 (3%)

Query: 39  LDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSI----VSSDWPFDLVRCMALS 93
           +D        +  + + Y G              ++LDS+    +  D     +  +   
Sbjct: 7   VDDQEMIRKGLRVIIDAYPGLDVVAEAGDGFTAVRRLDSVQVDVILMDLNMPGMDGVEAV 66

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
            + +     + P  L    F      +       N +         +  G+  +      
Sbjct: 67  RRIREARGPEGPRILVLTTFDQDENVLAAMRAGANGFLGKGAGPDELAEGIRRVAAGAHA 126

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGI 212
           +  + +    L++          D    K FE LT RE+E +  + EG  + EI   + I
Sbjct: 127 LSDNAIG--ALVSHVSDPHAVPPDPDKAKLFEGLTPRELEVVRLVVEGLDNAEIGRRVFI 184

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  T   ++   M K   + R+  ++ AV+  I
Sbjct: 185 SPFTAKTHVNRAMAKVGARDRAQLVSLAVQAGI 217


>gi|296120127|ref|ZP_06838681.1| DNA-binding response regulator DegU [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967281|gb|EFG80552.1| DNA-binding response regulator DegU [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 228

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 54/152 (35%), Gaps = 14/152 (9%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V     + I         Y +     A +   +  +   G      RL   G 
Sbjct: 79  PKFLALSVSDAAEDVIALIRAGARGYVTKNIAGAELAEAVARV-HSGDAYFSPRL--AGF 135

Query: 165 LAAYQANMFKSYDVHWGKDFE-----------LTGREVECLTWISEGKTSDEIAVILGIS 213
           +    A+   + D   G D E           LT RE+E L  ++ G T  EI   L IS
Sbjct: 136 VLDAFASGEPAPDPAGGPDSEPEPISDPVVDALTRRELEVLRLLARGYTYREIGQELFIS 195

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             TV  + ++I+RKT    R     +A   ++
Sbjct: 196 IKTVETHASNILRKTQQSNRYQLTRWAADRDL 227


>gi|292487894|ref|YP_003530769.1| transcriptional activator protein expR [Erwinia amylovora CFBP1430]
 gi|292899116|ref|YP_003538485.1| LuxR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291198964|emb|CBJ46075.1| LuxR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291553316|emb|CBA20361.1| Transcriptional activator protein ExpR [Erwinia amylovora CFBP1430]
          Length = 240

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + + RE+E L W +EGKTS EI++IL IS+NTVN +   + ++     ++   +YA   
Sbjct: 178 LDFSERELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAI 237

Query: 244 NIV 246
            ++
Sbjct: 238 GLI 240


>gi|239929404|ref|ZP_04686357.1| two-component system DNA-binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291437730|ref|ZP_06577120.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340625|gb|EFE67581.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 241

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +RP   L   V     + I    G    Y + T   A +   +  +     +        
Sbjct: 102 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGADLIDSVFRVQEGDAVFSP----- 156

Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              LA +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +
Sbjct: 157 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVES 214

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++RK     R     +A    +V
Sbjct: 215 HVSAVLRKLQLSNRHELTRWATARRLV 241


>gi|148241069|ref|YP_001220570.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146411445|gb|ABQ39898.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1]
          Length = 243

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 2/153 (1%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E     +  +R        F              N++ + T       +GL       + 
Sbjct: 92  EARSAKSPKERRLFDDALSFKIRTGLTVRIPSSQNQFAAFTLAADDRSLGLDRFIETSQD 151

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L   +  +   A   A           +   LT RE +CL WIS+GKT  +IA +LG+S
Sbjct: 152 ML--EMVGLTYHAHVSAARIGRTPPDGQQGSPLTQRERQCLAWISDGKTMQDIAELLGVS 209

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              V  ++ +  R  A  T   A+A A R  ++
Sbjct: 210 PRGVKFHLDNARRNLAALTLPHAVALAFRQGLL 242


>gi|328885874|emb|CCA59113.1| two-component regulator [Streptomyces venezuelae ATCC 10712]
          Length = 221

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                    H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  
Sbjct: 144 HRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLG 203

Query: 230 TKTRSGAIAYAVRNNIV 246
           T  R+G +A A+R  I+
Sbjct: 204 TGDRAGMVAVALRTGII 220


>gi|330811658|ref|YP_004356120.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379766|gb|AEA71116.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 849

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +  +   + +   RL +   L  +  +  +       +D  L+ RE+E L  I++G ++ 
Sbjct: 748 VTCWRAQQALCELRLRQPE-LVRWAQSAEQVEPPASAEDTLLSHRELEVLELIAQGHSNQ 806

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +IA  L IS +TV  +   I  K   + R+ A+A A
Sbjct: 807 QIAERLFISLHTVKTHARRIHSKLGVQRRTQAVAKA 842


>gi|258650732|ref|YP_003199888.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553957|gb|ACV76899.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 214

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++A    +     +       ELTGRE++ L  +++G+++ EIA  L ++  TV  ++A 
Sbjct: 130 VMARLVDSYVGHQEPPPPGLAELTGRELDVLRCLADGRSNAEIAGELFLAETTVKTHVAR 189

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
           I+ K   + R  A+  A R  +
Sbjct: 190 ILAKLGVRDRVQAVVIAHRCGL 211


>gi|21218963|ref|NP_624742.1| two-component response regulator [Streptomyces coelicolor A3(2)]
 gi|6138889|emb|CAB59718.1| putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 219

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 11/193 (5%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVF 113
           + V  +    +    +  +  P  ++  + +   D      +   +        L    F
Sbjct: 24  MDVVAEAADGRDAVELTRTHRPDIVLMDIRMPGTDGLAATAEICADPALRGTRVLILTTF 83

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
            T            + +         +  G+  +     ++         L+  +  +  
Sbjct: 84  ETDEHVARALRIGASGFLGKDVTAEELLDGIRTVAAGDALLSAAATR--SLITRFLDSPD 141

Query: 174 KSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                   +D   LT RE E    +++GK+  EIA  L +S  TV  ++     K   + 
Sbjct: 142 PRASPVPPEDLAALTAREREVTALVADGKSDKEIAAELFLSPLTVRTHVQRAKTKLGARD 201

Query: 233 RSGAIAYAVRNNI 245
           R+  +A+A R+ +
Sbjct: 202 RAQLVAHAYRSGL 214


>gi|111023173|ref|YP_706145.1| response regulator [Rhodococcus jostii RHA1]
 gi|110822703|gb|ABG97987.1| response regulator [Rhodococcus jostii RHA1]
          Length = 219

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 2/141 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V     + I         Y + T   A +  G+  +     +    RL    +
Sbjct: 80  PVCLALSVSDAAEDVIAVIRAGARGYVTKTISGAELADGVRRVAGGDAVFSP-RLAGF-V 137

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L ++             +   LT RE+E L  ++ G T  EIA  L IS  TV  + +++
Sbjct: 138 LDSFTGRSNAPEPQLDPELDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNV 197

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           +RKT    R+    +A R  I
Sbjct: 198 LRKTQQSNRNALTRWAHRRRI 218


>gi|242237587|ref|YP_002985768.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242129644|gb|ACS83946.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech703]
          Length = 236

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 19/191 (9%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF----------HTLPENITPPA 124
           D ++ S++P + V        +    V+        P              LP+      
Sbjct: 43  DMVIISNYPSEWVNTYKKRNYNSIDPVILTAVNKVSPFSWNDNMVRNSRLKLPQLFEHAR 102

Query: 125 GMD--NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-------NMFKS 175
             D  N Y  +  D       L L       ++     ++ +L                 
Sbjct: 103 QYDICNGYTFVLHDQNNHMATLSLAADNIENMIHGNQEKLQMLLIATHEKTLSLYRELAE 162

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              H   D   + RE + L W S GKT  EIA+ILGI  +TV  +I +++RK        
Sbjct: 163 SRQHRSNDMLFSERENDILYWASMGKTYQEIALILGIKTSTVKFHIGNVVRKLGVTNAKH 222

Query: 236 AIAYAVRNNIV 246
           AI   +  N++
Sbjct: 223 AIRMGIEMNLI 233


>gi|197121316|ref|YP_002133267.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171165|gb|ACG72138.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
          Length = 208

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++EG  +  IA  LGIS +T   ++ +I+ K    +R+ AI  A R  
Sbjct: 145 PLTPREREVLALVAEGLGNKAIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLG 204

Query: 245 IV 246
           +V
Sbjct: 205 LV 206


>gi|166007196|pdb|2RNJ|A Chain A, Nmr Structure Of The S. Aureus Vrar Dna Binding Domain
          Length = 91

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 30  LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 89

Query: 246 V 246
           +
Sbjct: 90  I 90


>gi|118464557|ref|YP_883346.1| LuxR family transcriptional regulator [Mycobacterium avium 104]
 gi|118165844|gb|ABK66741.1| transcriptional regulator, LuxR family protein [Mycobacterium avium
           104]
          Length = 523

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 38/89 (42%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            L  +   A   A           +   LT RE+E L  ++ G ++ EIA  L IS  T 
Sbjct: 428 ELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEIAAALVISEKTA 487

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            N++     K     R GA  YA+++ +V
Sbjct: 488 RNHVERTYAKIGVSNRIGASMYALQHGLV 516


>gi|29829281|ref|NP_823915.1| LuxR family transcriptional regulator [Streptomyces avermitilis
            MA-4680]
 gi|29606388|dbj|BAC70450.1| putative LuxR-family transcriptional regulator [Streptomyces
            avermitilis MA-4680]
          Length = 1157

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 2/153 (1%)

Query: 93   SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            SE    +  L+RP +L   V H L E++   +G D+   +   ++ R+   +        
Sbjct: 995  SETVTAFEPLERPYDLAR-VRHRLAESL-LASGADDDARARATELLRLAGAVADHLGARP 1052

Query: 153  IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +     L              +S      +   LT RE + L  ++ G+++ +IA  L I
Sbjct: 1053 LAESVALLAQRARLTLSGTTRQSPPADPAEALGLTSRERDVLRLVAAGRSNRQIAEKLFI 1112

Query: 213  SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            S  T + ++++I+ K     R  A A A R  +
Sbjct: 1113 SPKTASVHVSNILAKLGVAGRGEAAALAHRMRL 1145


>gi|21224361|ref|NP_630140.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|256784453|ref|ZP_05522884.1| two-component regulator [Streptomyces lividans TK24]
 gi|289768332|ref|ZP_06527710.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|3169043|emb|CAA19241.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|289698531|gb|EFD65960.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 220

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                    H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  
Sbjct: 143 HRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLG 202

Query: 230 TKTRSGAIAYAVRNNIV 246
           T  R+G +A A+R  I+
Sbjct: 203 TGDRAGMVAVALRTGII 219


>gi|297160777|gb|ADI10489.1| putative two-component regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 262

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 2/142 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L     H             + +   T     + I  +     G  ++   L    L
Sbjct: 80  PRILVLSSAHRDEHAYDVLRAGADGFLPATTTPDEL-IAALFTVAAGDAVVSPGLAR-AL 137

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           + A +        +  G+  +LT RE + L  ++ G+++ EIA  L I+  TV ++++ I
Sbjct: 138 IHAVRHGPRPEVPIAKGRLEDLTERERDILVAVASGRSNAEIAAQLSIATTTVKSHVSRI 197

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  + +V
Sbjct: 198 LTKIGARARVQAVVFAYESGLV 219


>gi|28871016|ref|NP_793635.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|13182979|gb|AAK15017.1|AF234628_3 PsmR [Pseudomonas syringae pv. maculicola]
 gi|28854266|gb|AAO57330.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 247

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 21/196 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           +K   I+ S++P   ++    S       +++       P F     N       D+   
Sbjct: 52  RKAKPIILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDFLK 111

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   K +     R+ +        L  +   + K
Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIK 171

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H       + +L+ RE + L W++ GK   EIA I  IS  TV  +++++  K   
Sbjct: 172 TRAPHELFPPTANCKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEV 231

Query: 231 KTRSGAIAYAVRNNIV 246
           +T   A+  A++  +V
Sbjct: 232 RTAKQAVYKAIKMGMV 247


>gi|299531936|ref|ZP_07045336.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|298720111|gb|EFI61068.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 214

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 2/123 (1%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               N Y     D   + + +  +   G  I       I  +A  Q +           +
Sbjct: 93  RAGANGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRI--IAELQPSQPTEAHKEMPPE 150

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE++ L  +++G T+ EIA  L +SR TV  ++ +I RK A  +R+ A++ A   
Sbjct: 151 AILSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARAR 210

Query: 244 NIV 246
            ++
Sbjct: 211 GLL 213


>gi|254776638|ref|ZP_05218154.1| transcriptional regulator, LuxR family protein [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 523

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 38/89 (42%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            L  +   A   A           +   LT RE+E L  ++ G ++ EIA  L IS  T 
Sbjct: 428 ELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEIAAALVISEKTA 487

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            N++     K     R GA  YA+++ +V
Sbjct: 488 RNHVERTYAKIGVSNRIGASMYALQHGLV 516


>gi|311114585|ref|YP_003985806.1| two component system response regulator [Gardnerella vaginalis ATCC
           14019]
 gi|310946079|gb|ADP38783.1| two component system response regulator [Gardnerella vaginalis ATCC
           14019]
          Length = 243

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L + +       +  + 
Sbjct: 100 VMAAIHTGASGFLLKDTEPETLLNSIRTVYQGNAIIAPTATKRLIESMISKPSNESIASE 159

Query: 172 MFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
              + +    K           +LT RE E L  I+ G ++ EIA  L IS  TV  ++A
Sbjct: 160 EENTENASRSKQNANAYNSYLNDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVA 219

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+ K   + R  A+ +A  N +V
Sbjct: 220 HILGKIDARDRVQAVVFAYENGLV 243


>gi|163761091|ref|ZP_02168168.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162281642|gb|EDQ31936.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 260

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 82/244 (33%), Gaps = 30/244 (12%)

Query: 25  HLPTRSDLLAR-----MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD----------LF 69
            + + +DL +R     +  +   +     +  L +      F L+R            +F
Sbjct: 24  EISSDTDLSSRKPRKSVGKIANRIDGYRLLKDLAQEYSFDDFALLRLPQSLKSANFRSIF 83

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP--ENITPPAGMD 127
               L  I         +  + L        VL+       P    L   + I    G+ 
Sbjct: 84  DLHSLSEIE--------LEMLDLEGGCSAEPVLEHLMHWAVPYELRLTSNDAIDLAKGLL 135

Query: 128 NRY-----CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
             Y      +       +    +  F +           + L A    +    + ++   
Sbjct: 136 RHYGINVCVAFNLPSLTLTRYAIAFFARKDTPENRNTGALMLDALACFDRLNMHLLNADN 195

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             E   R+   L+  SEG TS +IAV L IS +TVN  +AS++R+     R   IA A+R
Sbjct: 196 SDEFDARDAAILSLTSEGLTSQQIAVELKISEHTVNANVASMIRRLGVLNRPQLIATAIR 255

Query: 243 NNIV 246
             ++
Sbjct: 256 KGLI 259


>gi|318061580|ref|ZP_07980301.1| two component system response regulator [Streptomyces sp. SA3_actG]
 gi|318080493|ref|ZP_07987825.1| two component system response regulator [Streptomyces sp. SA3_actF]
          Length = 167

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 92  LSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
           L   +    + +R   P  L    F       +      + +       + +   +  + 
Sbjct: 4   LDGVEATRRIHERAGAPRVLILTTFDLDEYAFSALRAGASGFMLKDVPPSELVAAIRAVH 63

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIA 207
               ++          L    A M          + + LTGRE E +  +++G ++ EIA
Sbjct: 64  SGDAVVAPSTTRR---LLDRFAPMLPGTGPATHPELDRLTGREQEVMRLVAQGLSNGEIA 120

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV  ++  ++ K   + R   +  A    IV
Sbjct: 121 ARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETGIV 159


>gi|290958411|ref|YP_003489593.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647937|emb|CBG71042.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 223

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + + + D      +   E   P       F       +      + +         +  
Sbjct: 55  DVRMPKLDGVEATRRICAEQDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201
            +  +     ++         LL  +   +  +      K+ E LT RE E +  +++G 
Sbjct: 115 AIRAVHSGDAVVAPSTTRR--LLDRFAPMLPSTGSEPRHKELERLTEREREVMILVAQGL 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|239944642|ref|ZP_04696579.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991106|ref|ZP_04711770.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448106|ref|ZP_06587496.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351053|gb|EFE77957.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 222

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D  +  L   V  +  G  LL P+            G L A  A 
Sbjct: 92  VYDALTAGASGFLLKDATFPELLHAVRVVAGGHALLAPEI----------TGRLIAEFAR 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S       +  LT RE E L  I+ G ++ +IA  L I+ +TV  +I  +  K   +
Sbjct: 142 QRVSAPPKRSIE-GLTAREAEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    +V
Sbjct: 201 DRAQAVILAYELGLV 215


>gi|239943689|ref|ZP_04695626.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990140|ref|ZP_04710804.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447153|ref|ZP_06586543.1| two-component system DNA-binding response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291350100|gb|EFE77004.1| two-component system DNA-binding response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 231

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +           L
Sbjct: 96  RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSP-------RL 148

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 149 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 208

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 209 VLRKLQLSNRHELTRWATARRLV 231


>gi|296128146|ref|YP_003635396.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296019961|gb|ADG73197.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 225

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +     D    +L   V  +  G  +L      + R  L E+          
Sbjct: 97  FGALEAGASGFLLKDAEPATLVEAVRSVAAGHGML---ANALTRRVLREV------VTRR 147

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE++ L  +++G +++EIA  L +  +TV +++A  M K   ++
Sbjct: 148 RTQPVTAARASELLTPRELDILLLLAQGMSNEEIARELYLEVSTVKSHLARAMPKLGVRS 207

Query: 233 RSGAIAYAVRNNIV 246
           R  A+ +A +N IV
Sbjct: 208 RLQAVVWAYQNGIV 221


>gi|170751882|ref|YP_001758142.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170658404|gb|ACB27459.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 305

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  +TGRE E L W+S GK+S +I  ILG+S  TV  ++  I  K   + R+ A  
Sbjct: 238 RLRARLPVTGREAEVLLWLSRGKSSRDIGEILGLSHRTVTKHLEGIYAKLGVENRTAASI 297

Query: 239 YAVRN 243
            A R+
Sbjct: 298 IAARH 302


>gi|163758741|ref|ZP_02165828.1| putative AHL-dependent transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284031|gb|EDQ34315.1| putative AHL-dependent transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 239

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            P+F     +   P+G         F  A + I           ++  R       AA+ 
Sbjct: 100 LPLFEDALAHGLGPSGYSIPIIDKNFRRALLSINSFETGEAWSDLVN-RHKAAWAEAAFL 158

Query: 170 ANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +     ++H G D    L+ RE+ECLT  + GK   +IA+ILG+S +TV  Y+ S   K
Sbjct: 159 IHDMAMKEIHGGNDQALHLSPREIECLTLAARGKDHKDIALILGLSGHTVQGYLKSARHK 218

Query: 228 TATKTRSGAIAYAVRNNIV 246
             +     AIA A+R+ I+
Sbjct: 219 LGSVNIPQAIAEAIRSRII 237


>gi|332968686|gb|EGK07738.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 215

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 13/206 (6%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
            +S  +      E VG ++      +  ++ + D ++        +  M   E  +    
Sbjct: 17  GLSLFLGTREEMEIVGEANNGAEALEKVKQLRPDVVLMDLM----MPVMDGVEATRRIKE 72

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +    ++      +  +++ P          L    A   +  +    +G+  L  +   
Sbjct: 73  IHPDVKVVVLTSFSDQDHVLPAIRAGAEGYQLKEIEAEELVATIRAAHQGKTQLHPQ--- 129

Query: 162 IGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVN 218
               A +    F S    + +   L   T RE E L  I+EG ++ EIA  L I+  TV 
Sbjct: 130 ---AAGHLVQQFTSESTGFREQDGLEVLTPREQEVLRLITEGMSNKEIAANLVIAEKTVK 186

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNN 244
            +++ I+ K   + R+ A  +A++  
Sbjct: 187 THVSGILNKLDLQDRTQAAIHAMKQG 212


>gi|261408873|ref|YP_003245114.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329928799|ref|ZP_08282638.1| response regulator protein VraR [Paenibacillus sp. HGF5]
 gi|261285336|gb|ACX67307.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328937442|gb|EGG33863.1| response regulator protein VraR [Paenibacillus sp. HGF5]
          Length = 217

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              +  G +  LT RE E L  I+EGK++ EI   L IS  TV  ++++++ K   + R+
Sbjct: 144 RRHMVNGDESGLTEREKEVLLLIAEGKSNKEIGEELHISIKTVKTHVSNLLMKCELEDRT 203

Query: 235 GAIAYAVRNN 244
               YA R  
Sbjct: 204 QLAIYAHRKG 213


>gi|271964734|ref|YP_003338930.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507909|gb|ACZ86187.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 5/142 (3%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F              + +        ++   + ++     ++         L
Sbjct: 78  PKVLILTTFDLDDYVYEALRAGASGFLLKDASAQQLAEAVRVVAAGEALLAPSVTRR--L 135

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ++ +     +          ++T RE E L  I++G+++ EIA  L +S  TV  ++  I
Sbjct: 136 ISEFARVGPRRPRGRLD---DITERETEVLALIAQGRSNQEIAEELVLSEQTVKTHVGRI 192

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R+ AI +A    +V
Sbjct: 193 LAKLNLRDRAQAIVHAYETGLV 214


>gi|29832581|ref|NP_827215.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609701|dbj|BAC73750.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 2/177 (1%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           +    +V  D        +A +        L     +    F      +       + + 
Sbjct: 46  ETQADVVLMDIRMPGTDGLAATRLISADPGLTHVRVVMLTTFEVDEYVVQSLRAGASGFL 105

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGR 189
               +   +   + +      ++       +      Q +    +       +   LTGR
Sbjct: 106 GKGAEPEELLNAIRVAAGGEALLSPAATKGLIAKFLAQGDGLDDERDPARAERLDALTGR 165

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 166 EREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 222


>gi|298486193|ref|ZP_07004256.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159200|gb|EFI00258.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|306431677|emb|CBM41481.1| N-acyl homoserine lactone sensor/regulator [Pseudomonas savastanoi
           pv. savastanoi]
          Length = 247

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 21/196 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           + +  ++SS++P   ++    S       +++       P F     N       D+   
Sbjct: 52  RNVKPVISSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 111

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   + +     R+ E        L  +   + K
Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 171

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H         +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   
Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWMAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231

Query: 231 KTRSGAIAYAVRNNIV 246
           +T   A+  A+   +V
Sbjct: 232 RTAKQAVYKAINMGMV 247


>gi|302554896|ref|ZP_07307238.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472514|gb|EFL35607.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                    H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  
Sbjct: 143 HRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLG 202

Query: 230 TKTRSGAIAYAVRNNIV 246
           T  R+G +A A+R  I+
Sbjct: 203 TGDRAGMVAVALRTGII 219


>gi|262376171|ref|ZP_06069401.1| two component transcriptional regulator [Acinetobacter lwoffii
           SH145]
 gi|262308772|gb|EEY89905.1| two component transcriptional regulator [Acinetobacter lwoffii
           SH145]
          Length = 229

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 9/215 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           ++       R+  +   +G +  +L+  +  +E    SIV        +  + L +    
Sbjct: 17  VEDEYVIQRRLKIILTNLGYNEDVLLFANTVKEAY--SIVQQQPIALALVDLGLPDGSGI 74

Query: 99  Y---NVLQRPTELFCPVFH---TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                + ++  +    V     T              Y     D   + + +  +   G 
Sbjct: 75  SIIEKIREQDAQALILVVSAWSTQDSLFRAIQAGATGYVLKERDDVEVALAIRSILRGGA 134

Query: 153 IILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            I      EI   ++    +     +        LT RE E L+ +++G ++ EIA  L 
Sbjct: 135 PIDPFVAREILKQISIPTISGTVEQNRPAADQETLTQREQEILSLVAQGLSNREIAEQLC 194

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +SR TV ++I  I RK +   R+ A++ A    I+
Sbjct: 195 VSRYTVESHIKHIYRKLSVSKRTKAVSTARHLGIL 229


>gi|258653548|ref|YP_003202704.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556773|gb|ACV79715.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 223

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 3/145 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSL--TFDVARIRIGLMLLFPKGRIILRDRLWEI 162
             ++   V  T  ++    A +                 +  + +  +G  +L  R   +
Sbjct: 76  LAQVKVLVLTTFEQDDYILAALQAGASGFLGKGASPTQLLDAIRVIARGESLLSPRATRV 135

Query: 163 GLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            +  A  A    + D   G D   LT RE E +  +++G ++DEIA  L +S  T   ++
Sbjct: 136 VIERALAAPGAATPDEAAGPDLSVLTEREREIVGLVAQGLSNDEIAARLYLSPLTAKTHV 195

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
              M K   + R+  +  A R  +V
Sbjct: 196 NRAMTKLGARDRAQLVVLAYRAGLV 220


>gi|220909912|ref|YP_002485223.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866523|gb|ACL46862.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 245

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I +G ++ EIA  L I+  TV  ++ +I+ K     R+ A   A+R+ 
Sbjct: 183 PLTQRELEVLELIVKGHSNAEIASKLYITVGTVKTHVRNILNKLCADDRTQAAVLALRSG 242

Query: 245 IV 246
           +V
Sbjct: 243 LV 244


>gi|320009015|gb|ADW03865.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 231

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +           L
Sbjct: 96  RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLIDSVFRVQEGDAVFSP-------RL 148

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 149 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 208

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 209 VLRKLQLSNRHELTRWATARRLV 231


>gi|298248918|ref|ZP_06972722.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297546922|gb|EFH80789.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 788

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT R+VE L  ++EG T  EIA  L IS  TVN ++  I  K    TRS A  YAV   
Sbjct: 727 QLTQRQVEILRLLAEGLTDKEIAERLCISPRTVNAHLNKIYPKIHVSTRSAATRYAVERK 786

Query: 245 IV 246
           ++
Sbjct: 787 LI 788


>gi|304399203|ref|ZP_07381070.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304353257|gb|EFM17637.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 215

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     L   + +   G ++L      IL  RL E        A 
Sbjct: 94  VISALKRGADGYLLKDMEPEDLLKALHQAAAGQIVLSEALTPILVARLRE--------AQ 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++ D++     +LT RE E L  IS+G T+  IA  L IS +TV  ++  +++K   K
Sbjct: 146 PGQTRDIN-----QLTRREREILQLISDGMTNKAIARKLDISESTVKVHVKYLLKKMNLK 200

Query: 232 TRSGAIAYAVRNNI 245
           +R  A  +A++N +
Sbjct: 201 SRLEAAVWALQNGL 214


>gi|224552927|gb|ACN54704.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           + ++R   +  L          Y  H   K+  L+ RE + L W+  GKT  E+AVIL I
Sbjct: 115 MEKNRSKIVSFLINLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSI 174

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV  ++ ++M+K      + A+       ++
Sbjct: 175 AERTVKFHMGNVMKKLGVNNATHAVKLGTELRLL 208


>gi|224552918|gb|ACN54698.1| PagR [Pantoea agglomerans]
 gi|224552921|gb|ACN54700.1| PagR [Pantoea agglomerans]
 gi|224552924|gb|ACN54702.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           + ++R   +  L          Y  H   K+  L+ RE + L W+  GKT  E+AVIL I
Sbjct: 115 MEKNRSKIVSFLINLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSI 174

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV  ++ ++M+K      + A+       ++
Sbjct: 175 AERTVKFHMGNVMKKLGVNNATHAVKLGTELRLL 208


>gi|51893773|ref|YP_076464.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857462|dbj|BAD41620.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 224

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 13/189 (6%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-------LFCPVFHTLPEN 119
           +   +Q+   +     P  ++  +AL  +     +L R  E       +      +  + 
Sbjct: 27  EAGDDQEALRLAQELRPDVILLDLALPRRTG-LELLPRLREELPETQVVILTYSASEQDA 85

Query: 120 ITPPAGMDNRYCSLTFD----VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           I         Y   +       ARIR       P    ++R+ L  +   +         
Sbjct: 86  IAALQAGAAGYLVKSMAPEALAARIREAFRGDVPVSGSVMRNVLRAMSTPSELPPPTPGG 145

Query: 176 YDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                   +  L+ RE + L  I+ G T+ EIA  LG+S NTV NY+ SI+ K   + R 
Sbjct: 146 QPGAGEAAESLLSPREAQILRRIAAGNTNREIAEQLGLSENTVKNYVKSILAKLNLENRV 205

Query: 235 GAIAYAVRN 243
            A A+A+ N
Sbjct: 206 QAAAWALNN 214


>gi|224552909|gb|ACN54692.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+ 
Sbjct: 141 HQKKNAFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVK 200

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 201 LGTELRLL 208


>gi|219667264|ref|YP_002457699.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219537524|gb|ACL19263.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 212

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 8/160 (5%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           ++ M      K        T++     H   E I P   +      L    A   +  + 
Sbjct: 59  MKGMDGLTATKDILAASPKTKVILLTQHENKEYILPALKIGAAGYVLKRAAADEVVNAIR 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              +GR  L   + +I + A    +          +   LT RE E L  +++G T++EI
Sbjct: 119 TTYQGRSFLDPEISDIVVNAYRHGS--------EDEYETLTEREREILILLAKGHTNNEI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A IL IS  TV+ + +++M+K    ++     YA++  ++
Sbjct: 171 APILNISAKTVDYHRSNLMKKLNLHSKVELTKYALKRGLI 210


>gi|182679457|ref|YP_001833603.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635340|gb|ACB96114.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 239

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 81/221 (36%), Gaps = 13/221 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMALS 93
           +   D       R+ A    +G   F+L      +E  ++ I  V  DW F     +   
Sbjct: 16  IEGGDSLSVIQDRIRAFAGPLGYDRFVLFTASAAREDVVERIYWVEGDW-FGTGEAVDAL 74

Query: 94  EKDKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLM 145
              +   V +   E+  P F T        L + +  P G       +         G M
Sbjct: 75  TYIRRCPVNRHILEVSEPFFWTKTRSESGELYQVVRTPRGRGVHGLQIPIFGPSGLEGAM 134

Query: 146 LLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            L  +           + L+  AA+ +        +     +L+ RE E L W + G+  
Sbjct: 135 SLGGERIDASPQARLALSLVGTAAFLSARRLLEAPNSSATAKLSHREREILAWTAAGRRQ 194

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +IA  LG+S  TV N++  I R+ A  T + AI  A+RN 
Sbjct: 195 ADIAATLGLSERTVENHLRRIRRRLAVMTTAQAIRVAIRNG 235


>gi|325067354|ref|ZP_08126027.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
          Length = 244

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 7/165 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF-DVARIRIG-L 144
           VR   ++  +    + Q        +  T   +    AG+          D     +   
Sbjct: 79  VRMPGMNGIEATERIAQECPGTRVLILTTFDLDEYAFAGLRAGASGFLLKDTRPTELAEA 138

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
           +     G  ++  R+ +  +L  + A++  S          +   LT RE E L  +S+G
Sbjct: 139 IRTVASGEAVVSPRITQR-MLEMFAASLPSSDAPEQSSCDPRIESLTPREKEILVLMSQG 197

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    +
Sbjct: 198 MSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETGL 242


>gi|227545988|ref|ZP_03976037.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213622|gb|EEI81471.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517050|emb|CBK70666.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bifidobacterium longum subsp.
           longum F8]
          Length = 296

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N +
Sbjct: 236 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 295

Query: 246 V 246
           V
Sbjct: 296 V 296


>gi|86748375|ref|YP_484871.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86571403|gb|ABD05960.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 309

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  +F LT RE E L W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R
Sbjct: 240 EFTTEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294


>gi|21224488|ref|NP_630267.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|4007711|emb|CAA22396.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 260

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+  Y   +    +     D  LT RE E L  ++EG +S EIA IL IS  TV  + A
Sbjct: 178 ALIRNYLDRVRHGEETS---DHILTPREEEVLKLVAEGHSSKEIAEILFISIKTVQRHRA 234

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++++K   + R     YA+R  ++
Sbjct: 235 NLLQKLGLRDRLELTRYAIRAGLI 258


>gi|239816173|ref|YP_002945083.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239802750|gb|ACS19817.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 262

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H      T          S    V ++  G   + PK    L  R+         Q +
Sbjct: 135 VMHAFELGATGYLLKHAWLQSFAEAVLQVVNGGAAITPKLTRRLLTRM-------NLQGS 187

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       ++  LT RE E L +++ G  S EI+V LGIS  TVN +I +I +K    
Sbjct: 188 GERPPTETPLREATLTAREREVLRFVARGCVSKEISVRLGISGQTVNAHIKNIYKKLHVH 247

Query: 232 TRSGAIAYAVRNN 244
           +R+ A++ A    
Sbjct: 248 SRAQAVSLATHTG 260


>gi|219848672|ref|YP_002463105.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219542931|gb|ACL24669.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 219

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 1/142 (0%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            RP  +    F      +   A     Y     D   +   +  +   G +I      ++
Sbjct: 75  PRPAVIMLTTFPDDERVLQSIAAGARGYLLKDVDHRVLADSIRTVAGGGALIHPQITAQL 134

Query: 163 -GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              L+                   LT RE + L  +++G T+ EI   L +S  TV N++
Sbjct: 135 LPRLSQLATPTTSLPTPSAEPSIALTPRERDILRLLAQGYTNQEIGEALALSIGTVKNHL 194

Query: 222 ASIMRKTATKTRSGAIAYAVRN 243
           + I  K A + R+ A  +A  +
Sbjct: 195 SVIFAKLAVRDRTQAALWAREH 216


>gi|327390805|gb|EGE89145.1| bacterial regulatory s, luxR family protein [Streptococcus
           pneumoniae GA04375]
          Length = 72

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE + L  I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA +
Sbjct: 4   HEELTARERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQ 63

Query: 243 NNIV 246
           +++V
Sbjct: 64  HHLV 67


>gi|297243640|ref|ZP_06927571.1| response regulator of two-component system [Gardnerella vaginalis
           AMD]
 gi|296888391|gb|EFH27132.1| response regulator of two-component system [Gardnerella vaginalis
           AMD]
          Length = 260

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N 
Sbjct: 197 ELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENG 256

Query: 245 IV 246
           +V
Sbjct: 257 LV 258


>gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 220

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 15/204 (7%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           AL  Y+    F +       E     +     P  ++  + + + D Y     +   P  
Sbjct: 17  ALQAYLEDEGFGVTTARNAIEGL--ELAEKHQPDLVITDIMMPQVDGYRFLQKLRALPRF 74

Query: 108 LFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            + PV     +      I       + Y     D   +   +  L  + R +  + +  +
Sbjct: 75  RYTPVVFLTAKGQTADRIQGYRHGCDAYMPKPGDPEELVAIVRNLLDRSRQVQSEIVSLV 134

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L     N   +       D +LT RE E L  +  G  + EIA  L  S   V  Y++
Sbjct: 135 SEL-----NHRPAPVAIEAIDLDLTPREQEVLLLVYAGLMNKEIAGRLERSTRNVEKYVS 189

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ KT T +R+  + +A+ + +V
Sbjct: 190 RLLAKTGTSSRTELVRFALEHGLV 213


>gi|304404930|ref|ZP_07386590.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345809|gb|EFM11643.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 237

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 166 AAYQANMFKSYDVHWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            A +A      D H          LT RE E L  ++ G ++ EI   LGIS NTV N++
Sbjct: 154 TAEKAITPPQPDKHAANRRTAATPLTDREKEILERVAYGDSNKEIGAKLGISENTVKNHL 213

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
            +I++K     R     YA    I
Sbjct: 214 KNILQKLHLDNRVQLARYAHEQGI 237


>gi|256370998|ref|YP_003108822.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007582|gb|ACU53149.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 216

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 10/173 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRY 130
            ++ S  P  +V    L+    +     LQR       VF++  ++   +        R 
Sbjct: 43  EVLESVHPDLIVTDARLTNDSGFEILEDLQRRGVAVPVVFYSAYDDEAYLFRALRAGARG 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGR 189
             L        +G++     G  ++   L   + LLAA      +  +   G    LT R
Sbjct: 103 YLLKQASGEELVGMLERAAGGETMIDAALAGRVALLAA----RLQFGEFWPGAHLGLTQR 158

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           E E L  + +G ++ +IA  L +   TV  +++SI RK   K R+ AIA A+R
Sbjct: 159 ESEILDLVVKGLSNRDIAQRLFLGEETVKTHLSSIYRKLKVKGRAEAIAVALR 211


>gi|227543314|ref|ZP_03973363.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227180927|gb|EEI61899.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 212

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+   AN   +     G    LT RE+E L  ++ G ++ EI  +L +S  TV +++  I
Sbjct: 133 LSPVVANRLMTR--VRGPKTTLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHI 190

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K   ++R+ A+A A    ++
Sbjct: 191 YDKLDARSRTAAVAAAREQGVL 212


>gi|302561047|ref|ZP_07313389.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302478665|gb|EFL41758.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 227

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L +E++ D +V  D        +A +        L     +    F      +       
Sbjct: 43  LAREERAD-VVLMDIRMPGTDGLAATRMISADPELAGVRVVILTTFEVDDYVVQSLRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS----YDVHWGKD 183
           + +     +   +   + +      ++    +   GL+A + A    S          + 
Sbjct: 102 SGFLGKGSEPGEMLNAIRIAAGGEALLSP--VATKGLIARFLAQEGTSEADRDPARAERL 159

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A  +
Sbjct: 160 DSLTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYES 219

Query: 244 NIV 246
            +V
Sbjct: 220 GLV 222


>gi|264680819|ref|YP_003280729.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262211335|gb|ACY35433.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 214

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 2/123 (1%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               N Y     D   + + +  +   G  I       I  +A  Q +           +
Sbjct: 93  RAGANGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRI--IAELQPSQPTEAHKEMPPE 150

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE++ L  +++G T+ EIA  L +SR TV  ++ +I RK A  +R+ A++ A   
Sbjct: 151 ALLSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARAR 210

Query: 244 NIV 246
            ++
Sbjct: 211 GLL 213


>gi|238789261|ref|ZP_04633048.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC
           33641]
 gi|238722593|gb|EEQ14246.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC
           33641]
          Length = 245

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 10/120 (8%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           D+ Y   + ++ + +I ++L+    +++    L+         A   +S      +D   
Sbjct: 132 DSIYFDESIEINKEKIQMLLILTHEKML---GLYHNS------AEKNESGTNKIERDI-F 181

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L W S GKT  EI++ILGI R+TV  +I +++RK        AI   +   ++
Sbjct: 182 SPRENEILYWASVGKTYSEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|254412403|ref|ZP_05026177.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180713|gb|EDX75703.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 271

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 27/181 (14%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-NRYCSLTFDVARIRIG 143
           DL R    S  D      +    +     H   + +        + YC    ++ ++   
Sbjct: 98  DLTRKFKSSHTDTQEPETR----VLILTMHDSEDAVLAAFAAGADSYCMKDIEIEQLVEA 153

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD------------------FE 185
           L +       I       I  +   Q     S ++   +D                  + 
Sbjct: 154 LEVTQEGNAWIDPA----IASIVLRQVKRDPSSEMAANQDRTVKIDGVGPEYEQVIEAYP 209

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I  G ++  IA  L I+  TV  ++ +I+ K     R+ A  +A+R+ +
Sbjct: 210 LTERELEVLELIVAGASNAAIAEKLYITVGTVKTHVRNILNKLCVDDRTQAAVHALRSGL 269

Query: 246 V 246
           +
Sbjct: 270 I 270


>gi|119509629|ref|ZP_01628775.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119465648|gb|EAW46539.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 238

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  I EG ++ +IA  L I+  TV  ++ +I+ K     R+ A   A+R+
Sbjct: 175 YTLTERELEVLQLIVEGCSNADIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRS 234

Query: 244 NIV 246
            +V
Sbjct: 235 GLV 237


>gi|311029481|ref|ZP_07707571.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 214

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A+   N F+S       D  LT RE+E L  + +G T+ EI+  L I   TV  ++++I
Sbjct: 131 VASKMMNRFRSPSKLPHDD--LTDRELEVLMCLGDGLTNQEISEELFIGIKTVKTHVSNI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K     R+ A  YA R+ ++
Sbjct: 189 LGKLQVADRTQAAIYANRHGVL 210


>gi|298248902|ref|ZP_06972706.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546906|gb|EFH80773.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 8/177 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF------CPVFHTLPENITPPAGMDNR 129
            +VS   P  ++  + +   D     +++    F          +   E +        R
Sbjct: 44  HLVSELVPDVVLMDLRMPAMDG-LEAIEQIRATFPHIAIIVLTTYDEDELMLRSLQAGVR 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
              L        +  +    +G ++L+  L +  +L         +       + +LT R
Sbjct: 103 GYLLKDSGLETVLQAIERAARGEMLLQPELMQR-VLDYAARRAAPASPPPGNSNVQLTER 161

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+ G+ S EI   LGI+R TV +Y+ SI  K    +R+ A+A A+   ++
Sbjct: 162 EQEVLAGIAAGERSKEIGARLGITRRTVESYLNSIYTKLNVDSRAAAVAVAIERGLL 218


>gi|302543726|ref|ZP_07296068.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461344|gb|EFL24437.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 226

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 4/135 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P     +  RL      A + A 
Sbjct: 92  VYQALRAGASGFLLKDASAHQLGEAVRVVAAGEALLAPT----VTKRLIATFSQAGWTAL 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +      +  ELT RE E L  +++G+++ EIA  L ++ +TV  +++ I+ K   +
Sbjct: 148 AGAARPGQQARLDELTERENEVLVLVAQGRSNAEIAQHLVVAESTVKTHVSRILVKLGLR 207

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A    +V
Sbjct: 208 DRTQAAVFAYEARLV 222


>gi|239926785|ref|ZP_04683738.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435114|ref|ZP_06574504.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338009|gb|EFE64965.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 224

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V  RP  L    F              + +       A +   + ++     ++      
Sbjct: 77  VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTR 136

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              L+A +             +   LT RE E LT ++ G+++ EIA  L ++  TV  +
Sbjct: 137 R--LIADFARQRPAVRGKPALRLKALTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTH 194

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ I+ K   + R+ A+ +A  + +V
Sbjct: 195 VSRILTKLDLRDRAQAVVFAYESQLV 220


>gi|229490673|ref|ZP_04384511.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229322493|gb|EEN88276.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 227

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 44/95 (46%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R I      E    +   + + +S +        LT RE+E L  ++ G ++ +I   L 
Sbjct: 133 RAIRAVSRGESAFDSRSASAVVRSLNGQSSSKERLTDRELEVLRLLANGLSNIKIGERLF 192

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  ++++IMRK     R+ A+  A +  ++
Sbjct: 193 ISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 227


>gi|116071519|ref|ZP_01468787.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116065142|gb|EAU70900.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 92

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 43/72 (59%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D     D  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R 
Sbjct: 3   SVDTTDPLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRV 62

Query: 235 GAIAYAVRNNIV 246
             + +++ N  +
Sbjct: 63  ALLNWSMDNGKI 74


>gi|239928247|ref|ZP_04685200.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291436576|ref|ZP_06575966.1| two-component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|302557677|ref|ZP_07310019.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|89274975|gb|ABD65938.1| two-component response regulator [Streptomyces fungicidicus]
 gi|291339471|gb|EFE66427.1| two-component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|302475295|gb|EFL38388.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                    H G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  
Sbjct: 143 HRRPPGAPSHPGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLG 202

Query: 230 TKTRSGAIAYAVRNNIV 246
           T  R+G +A A+R  I+
Sbjct: 203 TGDRAGMVAVALRTGII 219


>gi|326331825|ref|ZP_08198112.1| putative LuxR-family transcriptional regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325950322|gb|EGD42375.1| putative LuxR-family transcriptional regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 972

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 40/89 (44%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           RL    LL               G   +LT RE E L  ++ G+++ EI   L IS  TV
Sbjct: 883 RLGAQPLLDHLLTLGTTPQRSAAGPSGQLTARESEILALVAAGRSNGEIGKQLFISTKTV 942

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++++I+ K     R+ A A   R  +V
Sbjct: 943 SVHVSNILAKLGASGRTEAAAIGRRRGLV 971


>gi|295839399|ref|ZP_06826332.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|295827445|gb|EDY46841.2| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 226

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R  +G  +  P    ++   L E   LAA 
Sbjct: 92  HQDVLEAVKSGATGYLLKSASTEELIDAVRRTALGEAVFTPGLAGLV---LGEYRRLAA- 147

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             +  K+     G    LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 148 -ESAPKAAGARPGTP-RLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 205

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 206 QLHNRVELVRYAIEQGL 222


>gi|29831224|ref|NP_825858.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608339|dbj|BAC72393.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 5/144 (3%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F       +      + +         +   +  +     ++         L
Sbjct: 77  PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLTAIRSVHSGDAVVAPSTTRR--L 134

Query: 165 LAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           L  + A M  S   +  + +   LT RE E +  +++G ++ EIA  L +S  TV  ++ 
Sbjct: 135 LDRF-APMLPSAGKEPQFKELERLTDREREVMVLVAQGLSNGEIAARLVLSEATVKTHVG 193

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+ K   + R   +  A    +V
Sbjct: 194 RILTKLGLRDRVQVVVLAYETGLV 217


>gi|227489040|ref|ZP_03919356.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227090985|gb|EEI26297.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 212

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+   AN   +     G    LT RE+E L  ++ G ++ EI  +L +S  TV +++  I
Sbjct: 133 LSPVVANRLMTR--VRGPKTTLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHI 190

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K   ++R+ A+A A    ++
Sbjct: 191 YDKLDARSRTAAVAAAREQGVL 212


>gi|68536238|ref|YP_250943.1| two-component system response regulator TcsR3 [Corynebacterium
           jeikeium K411]
 gi|260578938|ref|ZP_05846841.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
 gi|68263837|emb|CAI37325.1| two-component system response regulator TcsR3 [Corynebacterium
           jeikeium K411]
 gi|258602912|gb|EEW16186.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
          Length = 216

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 13/142 (9%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    + T  + +   +     Y         +  G+        ++ ++ + +   
Sbjct: 87  PQVLILTNYSTDSDVLGAISAGAVGYLLKDCAPDELAEGIRQAARGQTVMNKNIMGK--- 143

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L    AN F+S          LT RE E L   S+GK++  IA  L ++  TV +++A +
Sbjct: 144 LRGRLANPFES----------LTNREQEVLVLASQGKSNRAIAKDLVLTEATVKSHMAHV 193

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K   K R+ A+A A    I+
Sbjct: 194 FSKLNVKNRTAAVAVARERGII 215


>gi|301382983|ref|ZP_07231401.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062866|ref|ZP_07254407.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           K40]
 gi|302131657|ref|ZP_07257647.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 247

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 21/196 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           +K   I+ S++P   ++    S       +++       P F     N       D+   
Sbjct: 52  RKAKPIILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDFLK 111

Query: 131 ----------CSLTFDVARIRIGLMLL-----FPKGRIILRDRLWEIGL-LAAYQANMFK 174
                      + T   A      + L            +RD+  +I + L  +   + K
Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKTADIQMSLIRFHDRLIK 171

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H       + +L+ RE + L W++ GK   EIA I  IS  TV  +++++  K   
Sbjct: 172 TRAPHELFPPTANCKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEV 231

Query: 231 KTRSGAIAYAVRNNIV 246
           +T   A+  A++  +V
Sbjct: 232 RTAKQAVYKAIKMGMV 247


>gi|21221817|ref|NP_627596.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787004|ref|ZP_05525435.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289770897|ref|ZP_06530275.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|4585835|emb|CAB40929.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701096|gb|EFD68525.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 3/143 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F       +      + +         +   +  +     ++         L
Sbjct: 77  PKVLILTTFDLDEYAFSALKAGASGFMLKDVPPGELLAAIRSVHSGDAVVAPSTTRR--L 134

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L  +   +  +      K+ + LT RE E +  +++G ++ EIA  L +S  TV  ++  
Sbjct: 135 LDRFAPMLPATGQEPRQKELQRLTEREREVMVLVAQGMSNGEIAARLVLSEATVKTHVGR 194

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R   +  A    +V
Sbjct: 195 ILTKLGLRDRVQVVVLAYETGLV 217


>gi|310657820|ref|YP_003935541.1| two-component response regulator yhcz [Clostridium sticklandii DSM
           519]
 gi|308824598|emb|CBH20636.1| Two-component response regulator yhcZ [Clostridium sticklandii]
          Length = 213

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 11/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     +   + R+  G M+ FPK   ++ + +           +
Sbjct: 90  VLKCLNLGADGYLSKDVGCEGIIDAILRVYDGEMVTFPKVSDLIIEDM-----------D 138

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       K  +LT RE++ ++ IS+G ++  IA  L IS  TV N+++SI+RK +  
Sbjct: 139 YVRKQIEENTKSQKLTKRELQVMSLISKGMSNKAIAKHLEISDKTVKNHVSSILRKLSLN 198

Query: 232 TRSGAIAYAVRNNI 245
            R+    Y + NNI
Sbjct: 199 DRTQIAVYTLSNNI 212


>gi|162453707|ref|YP_001616074.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161164289|emb|CAN95594.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 242

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 3/143 (2%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           + RP  +         + +        R   L      +    +     G  ++  R   
Sbjct: 99  VDRPLAVVVITTFDHDDYVVSALKAGARGFLLKDAGPELLAQAIRAAASGDALIAPR-VT 157

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             LL+++ A+  +      G+   LT RE E L  ++ G+T+ EIA  L IS +TV  ++
Sbjct: 158 ARLLSSFVASRPQLPRAQPGE--ALTAREEEVLLIVARGRTNAEIADELHISLSTVKAHV 215

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
           AS+M K   + R     +A    
Sbjct: 216 ASLMTKLGARNRVEIAIWAYETG 238


>gi|86359866|ref|YP_471757.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
 gi|86283968|gb|ABC93030.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
          Length = 261

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 24/191 (12%)

Query: 63  LVRWDLFQEQKLDSIV----SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-P 117
           + R+ L     +D I+    S   PFD  R + ++E  +          +     H +  
Sbjct: 80  VSRYLLNDYINVDPIIREGFSRQLPFDW-REIDITETAQ--------EFMVDAELHGIGT 130

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             ++ P    +R   L+ +  +      L+    R  L + L E+G L     +    ++
Sbjct: 131 NGVSVPIVDKSRRSLLSINSQKSDEEWTLI---ERQFLPEWL-ELGFL----LHRKAVFE 182

Query: 178 VHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +H   D    L  RE+ECL W S GK S +I  ILG+S +T   Y+ S   K    T S 
Sbjct: 183 LHGENDPVPALGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSA 242

Query: 236 AIAYAVRNNIV 246
           AIA+AV  N++
Sbjct: 243 AIAHAVHLNLI 253


>gi|329938142|ref|ZP_08287593.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302631|gb|EGG46521.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 246

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T   + +   +  +     +           L
Sbjct: 111 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGSDLVASIFRVQEGDAVFSP-------RL 163

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 164 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSA 223

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 224 VLRKLQLSNRHELTRWATARRLV 246


>gi|239944389|ref|ZP_04696326.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239990844|ref|ZP_04711508.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291447858|ref|ZP_06587248.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350805|gb|EFE77709.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 217

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G T+ EIA  L IS  TV  ++  +  K   K R+ A+A      I
Sbjct: 156 LSAREREVLVLVARGTTNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVAVGYDRGI 215

Query: 246 V 246
           +
Sbjct: 216 L 216


>gi|170743557|ref|YP_001772212.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168197831|gb|ACA19778.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46]
          Length = 245

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 19/235 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS---IVSSDWPFDL 86
            ++L  +       +   ++      VG  H LL    +      D    + +  +P + 
Sbjct: 11  REVLQAIHRTATPENVRDQLLRTLAGVGVEHVLLATLRICDAVPCDRRPTVFAGTYPDEW 70

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R     +   +  V++   E       + P    P      R      +        + 
Sbjct: 71  ARRYYARDYILHDPVVRGVGERGSGFAWSDPGLCAPDDRAARRVLDEAGEFGLREGFTLP 130

Query: 147 LFPKG---------------RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           L                      +R  L  +G  A  Q  +    +     +  L+ RE 
Sbjct: 131 LLTLEGDTAGVSFVGEKLDLSPAVRGMLTLVGTYALGQVLLLAKGETGPLAE-PLSPRER 189

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W ++GK+  EIA  +GIS +    ++ ++ RK  T +R+ A+A  +R  I+
Sbjct: 190 ESLQWAADGKSDQEIADAMGISAHGAIRHLRAVRRKLGTTSRAHAVALGLRLGII 244


>gi|89897364|ref|YP_520851.1| hypothetical protein DSY4618 [Desulfitobacterium hafniense Y51]
 gi|89336812|dbj|BAE86407.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 212

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 8/160 (5%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           ++ M      K    +   T++     H   E I P   +      L    A   +  + 
Sbjct: 59  MKGMDGLTATKDVLAVSPKTKVILLTQHENKEYILPALKIGAAGYVLKRAAADEVVNAIR 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              +GR  L   + +I + A  Q N              LT RE E L  +++G T++EI
Sbjct: 119 ATYQGRSFLDPEIADIVVNAYRQGN--------EDAYETLTEREREILILLAKGHTNNEI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A IL IS  TV+ + +++M+K +  ++     YA++  ++
Sbjct: 171 APILNISSKTVDYHRSNLMKKLSLHSKVELTKYALKRGLI 210


>gi|21223170|ref|NP_628949.1| two-component system DNA-binding response regulator [Streptomyces
           coelicolor A3(2)]
 gi|8218193|emb|CAB92655.1| putative two-component system DNA-binding response regulator
           [Streptomyces coelicolor A3(2)]
          Length = 251

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 10/147 (6%)

Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +RP   L   V     + I    G    Y + T     +   +  +     +        
Sbjct: 112 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSP----- 166

Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              LA +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +
Sbjct: 167 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLYISVKTVES 224

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++RK     R     +A    +V
Sbjct: 225 HVSAVLRKLQLSNRHELTRWATARRLV 251


>gi|319652028|ref|ZP_08006149.1| LuxR family Two component transcriptional regulator [Bacillus sp.
           2_A_57_CT2]
 gi|317396319|gb|EFV77036.1| LuxR family Two component transcriptional regulator [Bacillus sp.
           2_A_57_CT2]
          Length = 217

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 4/140 (2%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           ++     H   E +          C L        +  +     G   L        L+ 
Sbjct: 78  QILILTMHDDEEYLFRAIQAGASGCILKSAPHDELLAAIRSVASGNAYLHPS-ATKRLME 136

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y  ++ +     +     L+ RE E LT I++G ++ +IA  L IS  TV  +  ++M 
Sbjct: 137 EYIGSVKQGNTDTFNL---LSDREKEVLTLIAKGFSNKDIAEQLVISVKTVETHKGNLME 193

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   KTR   +AYA++  ++
Sbjct: 194 KLQMKTRPELVAYALKKGLL 213


>gi|83594559|ref|YP_428311.1| two component LuxR family transcriptional regulator [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577473|gb|ABC24024.1| two component transcriptional regulator, LuxR family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 224

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLA---AYQANMFKSYDVHWGKDFELTGREVE 192
             +R+ I  + L   G + L   L +  ++    A QA    +          LT R+ E
Sbjct: 110 SSSRVMISALKLVLSGGMYLPAALLDDEVIVEPVAVQAPAGGAGGPTGPTASRLTPRQGE 169

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  + +GK++ EIA +L +S  TV  ++ +I++      R+GA+  A R  +
Sbjct: 170 VLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRLGL 222


>gi|302528110|ref|ZP_07280452.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302437005|gb|EFL08821.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 208

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +L+   A+      +       L+ RE+E L  ++ G T+ E A  L IS  TV  ++ 
Sbjct: 124 AVLSPAVASRIMG-QMRAPAQEPLSQREIEVLNLVARGSTNKEAAKKLFISEATVKTHLL 182

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
               K   K R+ A+A A    ++
Sbjct: 183 HAYAKLGVKDRAAAVAVAFERGLL 206


>gi|157150612|ref|YP_001449919.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075406|gb|ABV10089.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 214

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ 
Sbjct: 142 HIELHDDLTARERDILGLLAKGYENQRIADELYISLKTVKTHVSNILSKLEVSDRTQAVV 201

Query: 239 YAVRNNIV 246
           YA ++++V
Sbjct: 202 YAFQHHLV 209


>gi|149184297|ref|ZP_01862615.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148831617|gb|EDL50050.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 211

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 15/208 (7%)

Query: 54  EYVGASHFLLVRWDLF--QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT----- 106
           +  GA  F      +F  Q  +   +V+  +  D +     ++  +   +          
Sbjct: 2   DRFGADKFSYHFTPVFGSQVSRETQVVARGFSMDWLDLYDSADFRQCDPIPDEVMRAGHT 61

Query: 107 ---ELFCPVFHTLPE-----NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
              E         PE           G+ N +    +            FP       ++
Sbjct: 62  ISWEEALDRAEHTPEVERFIAALREYGIANGFGVPLYGPDNRDAYAAFGFPAEVTPTEEQ 121

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +  + ++A    +           +  L+ RE+E L  I+ GK+   IA +L IS +TV 
Sbjct: 122 IVALTMVARTAHDRVCQLVTIEEGEISLSQRELEVLRLIAHGKSKPVIAQLLEISADTVG 181

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            Y+  +  K     R GA   A++  ++
Sbjct: 182 TYVKRLYAKLGVSDRVGATVKALKLKLI 209


>gi|121608696|ref|YP_996503.1| response regulator receiver protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121553336|gb|ABM57485.1| two component transcriptional regulator, LuxR family
           [Verminephrobacter eiseniae EF01-2]
          Length = 361

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F+LT RE E L W+ +GK + +I  ILG S  TV  ++  +  K   +TR+ A A A+  
Sbjct: 292 FKLTAREAEVLYWVVQGKINRDIGAILGASPATVKKHLERVFAKLGVETRTAAAAMALNR 351


>gi|258652794|ref|YP_003201950.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258556019|gb|ACV78961.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 562

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 6/144 (4%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           RP +   P    L + +     ++  Y C+ T  V    +  +      R+  +     +
Sbjct: 415 RPADAVAP----LRDAVARWRELEAPYDCARTRTVLAEALAALGDNSSARLERQAAERTL 470

Query: 163 GLLAAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            +L A                   LT RE E L  ++ G T+ ++A  L IS  TV  ++
Sbjct: 471 TVLGAVVDLRRLAGGPGTTASPGGLTARETEILALVARGDTNRQVAQALVISEKTVARHL 530

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
           A++ RK    TR+ A+A+A RN +
Sbjct: 531 ANVHRKLGVSTRTAAVAWARRNGL 554


>gi|226303587|ref|YP_002763545.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226182702|dbj|BAH30806.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 205

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              +  L+ RE+E L  ++ G+++ EI   L +S  TV +++  I  K   K+R+ A+A 
Sbjct: 139 RKPETSLSPREIEVLKLVAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVAR 198

Query: 240 AVRNNIV 246
           A     +
Sbjct: 199 ARELGSI 205


>gi|156744138|ref|YP_001434267.1| ATP-dependent transcription regulator LuxR [Roseiflexus
           castenholzii DSM 13941]
 gi|156235466|gb|ABU60249.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Roseiflexus castenholzii DSM 13941]
          Length = 309

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 3/143 (2%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII--LRDRLWEIGL 164
           E+   +   L E     +    R  +   ++ R    + +   +G  +  L  +L     
Sbjct: 166 EMELHIVGALLEQAAGNSSNAIRMLARALEIGRAGGYVRVFLDEGEEMRTLLAQLRRDDF 225

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            A+  A   K   +      E LT RE++ L  ++EG ++ EIA  L +S  TV  ++  
Sbjct: 226 AASLLAAFGKPAHIDQSALIEPLTEREMDVLKLVAEGLSNPEIAEKLYLSVGTVKTHVKH 285

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K     R  A   A    ++
Sbjct: 286 IYGKLGVDDRVTAAGKARELGLI 308


>gi|328883924|emb|CCA57163.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 222

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 12/181 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNR 129
            +V    P  ++  + +   D      +      R   L    F              + 
Sbjct: 41  RLVDRHHPDVVLMDIRMPGLDGIEATRRIITTGARTRVLIVTTFDLDEYAYDGLRAGASG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185
           +         +  G+  +     ++         LL AY  ++ +S       +      
Sbjct: 101 FLVKDAQPEELLAGIRAVASGDAVVAPSLTRR--LLDAYIHHLPQSPTADPDPEDPRLAT 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT I +G T+ EIA  L ++ +TV  ++  I+ KT  + R  A+  A    +
Sbjct: 159 LTEREREILTVIGQGWTNTEIAERLHLAESTVKTHVGRILAKTGARDRVQAVILAYDTQL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|291300805|ref|YP_003512083.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570025|gb|ADD42990.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 19/205 (9%)

Query: 55  YVGASHFLLVRWDLF------QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
             G +H L    D+         Q +D+ V    P  ++  + + + D    +L++   L
Sbjct: 14  RTGFTHILNAPDDITVVAAVPGGQAVDATVQHR-PDVVLLDIRMPDVDG-LTILRQLRGL 71

Query: 109 FCP-------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
             P        F T              +     D   +   +  L   G ++       
Sbjct: 72  TRPPVVAMLTTFDTDEYVAAALRLGAAGFLLKDTDPEHLAHQVRALMSDGAVLSAKVTR- 130

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             ++  Y     +    H  +   LT RE E L  I+EG ++ +IA  + +S  TV +++
Sbjct: 131 -SVVDGYLQGENR--GQHTTRVSRLTRREREVLVLIAEGMSNSDIAARMFLSVGTVKDHV 187

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I+ K     R  A   A R  I+
Sbjct: 188 SAILTKLGINNRVQAALLAERAGIL 212


>gi|254392026|ref|ZP_05007217.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294814548|ref|ZP_06773191.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442938|ref|ZP_08217672.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705704|gb|EDY51516.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327147|gb|EFG08790.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 233

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +           L
Sbjct: 98  RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSP-------RL 150

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 151 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 210

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 211 VLRKLQLSNRHELTRWATARRLV 233


>gi|182440789|ref|YP_001828508.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178469305|dbj|BAG23825.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 224

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 61/172 (35%), Gaps = 9/172 (5%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLT 134
            P  +V  + +   +      +   +   P        F+             + +    
Sbjct: 48  HPDVIVMDIRMPGLNGIDATREITRQTDLPTKILVLTTFNLDEYVYEALRAGASGFLLKN 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   + ++     ++  +      L+A +      +      +  ELT RE E L
Sbjct: 108 ASGVELAEAVRIVAAGEALLSPEITKR--LIAEFSRLSTSTKRPTQVRIDELTHRETEVL 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G ++ EIA  L ++  TV  ++  I++K   + R+ A  +A    +V
Sbjct: 166 ALVAQGLSNAEIAGELVVAEQTVKTHMGRILQKLQLRDRTQAAVFAYETGLV 217


>gi|270308323|ref|YP_003330381.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270154215|gb|ACZ62053.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 232

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D+    L   V    +G   L P     L ++  E  +  + +A 
Sbjct: 90  VHEALRAGARAYVLKDSTSEELVRAVREAMLGHRYLSP----PLSEKAIEAYMEKSAEAT 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
               Y+        LT RE E L  +S+G T  EIA  L IS  TV  + A++MRK   +
Sbjct: 146 SLDPYET-------LTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLR 198

Query: 232 TRSGAIAYAVRNNIV 246
            ++  + YA++  I+
Sbjct: 199 NQTQLLRYALQRGII 213


>gi|302526791|ref|ZP_07279133.1| predicted protein [Streptomyces sp. AA4]
 gi|302435686|gb|EFL07502.1| predicted protein [Streptomyces sp. AA4]
          Length = 71

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 39/70 (55%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D       +L  RE+  L  ++EG ++ EIA  LG S +TV N +  +M +   + R+ A
Sbjct: 2   DGEAAYRPQLGERELRVLRLVAEGYSNSEIAAELGWSEHTVKNALYDLMARLGVRNRAHA 61

Query: 237 IAYAVRNNIV 246
            AYAVRN ++
Sbjct: 62  AAYAVRNGLI 71


>gi|327404862|ref|YP_004345700.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327320370|gb|AEA44862.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 218

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 77/204 (37%), Gaps = 11/204 (5%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSS--DWPFDLVRCMALSEKDKYYNVLQ--- 103
           +  LTE + A   + V    +  Q    I+ +    P  +   + +   D    V Q   
Sbjct: 16  VQILTEKLEAKSGVKVALTAYNGQAFLHILPTLTTLPEIIFMDIDMPVLDGIEAVKQAKA 75

Query: 104 ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
              +   +   VF       +      + Y      +A + + +  +   G   L   + 
Sbjct: 76  LYPQIHFIMITVFDDEERIFSAIQAGASGYLLKDESIANLHLAIDNVLNFGAAPLAPMIA 135

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +      +  N  K  ++   ++  L+ RE++ L  +++GK+   IA  L IS +TV  +
Sbjct: 136 KKAY--NFIQNQNKESNIQE-ENSPLSSREMDILNCLAQGKSYTIIADELFISPHTVRKH 192

Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244
           + +I  K    ++  A+  A++  
Sbjct: 193 MTNIYEKLHVNSKVEAVRLAMQKK 216


>gi|301057012|gb|ADK54837.1| two component regulator [uncultured soil bacterium]
          Length = 223

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P              L+A +   
Sbjct: 93  VYEALRAGASGFLLKDASAAELAQAVRVVAAGDALLAPNITK---------RLIAEFSRV 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    G+  ELT RE E L+ I++G ++ EIA  L ++  T   +++ I+ K   +
Sbjct: 144 TVAPRAPVKGRIGELTERETEVLSLIAQGLSNAEIATRLVVAEQTTKTHVSRILIKLGLR 203

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A    +V
Sbjct: 204 DRTQAAVFAYETGLV 218


>gi|182437898|ref|YP_001825617.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778534|ref|ZP_08237799.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466414|dbj|BAG20934.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658867|gb|EGE43713.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 226

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 11/166 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + +   D      +   +   P       F       +      + +       A +  
Sbjct: 57  DVRMPRLDGVEATRRICAQQDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLA 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEG 200
            +  +     ++          L    + M  S D         +LT RE E +  +++G
Sbjct: 117 AIRSVHSGDAVVAPSTTRR---LLDRFSPMLPSGDKEPKNKHVGKLTEREREVMLLVAQG 173

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 LSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLV 219


>gi|329937421|ref|ZP_08286979.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|329303297|gb|EGG47184.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
          Length = 229

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 3/172 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D        +A +        L     L    F T            + +     
Sbjct: 46  DIVLMDIRMPGTDGLAATSVLCADPDLSATRVLILTTFETEEYVARALHAGASGFLGKDV 105

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECL 194
               +  GL  +     ++         L+A +  +      +   K   ELT RE E +
Sbjct: 106 TTDTLLAGLRTVASGEALLSPAATR--TLIANFLMSPSPGAQLASPKRLSELTARERETM 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +EG ++ EIA  L +S  TV  +I   M K   + R+  +  A +  +V
Sbjct: 164 AMAAEGMSNSEIAEALVLSPLTVRTHIYRAMAKLGARDRAQLVVIAYQTGLV 215


>gi|295394810|ref|ZP_06805025.1| LuxR family DNA-binding response regulator [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972406|gb|EFG48266.1| LuxR family DNA-binding response regulator [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 204

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G T+ EIA  L IS+ TV  ++  I  K     R+ A+A A    +
Sbjct: 143 LSARELEILQAVATGHTNKEIAQELFISQATVKTHLVHIFDKLGVDNRTSAVAKAREQQL 202

Query: 246 V 246
           +
Sbjct: 203 I 203


>gi|297197337|ref|ZP_06914734.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714865|gb|EDY58899.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 227

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG-RIILRDRLWEIGLLAAYQA 170
           V   L    +   G D    +L   +  +  G  LL P   R ++   L   GL      
Sbjct: 93  VAQALRSGASGFLGKDVTADALLAGIRTVAAGDSLLSPGATRTLITRFLAAPGL-----G 147

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
               + D   G    LTGRE E + W++EG ++++IA  L +S  TV  ++   M K   
Sbjct: 148 TRLAAADDLTG----LTGREREVMAWVAEGHSNEKIAEKLFVSPLTVRTHVHRAMTKLGA 203

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+  +  A ++ +V
Sbjct: 204 RDRAQLVVMAYQSGLV 219


>gi|331694203|ref|YP_004330442.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948892|gb|AEA22589.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 235

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 13/175 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGM---DNRY 130
           +V    P  L+  + +   D      +           V  T  ++    A +      +
Sbjct: 66  LVDRHRPDVLLTDLRMPGCDGVEATRRVRAAHPGTAVVVLTTYVDDDAIVAALRAGAAGW 125

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S   D   I   L         I    L    L+AA Q                LT RE
Sbjct: 126 LSKDADADAIGRALHSAADGQGTIDAGALAR--LVAASQ-----PAPAGGEPPDGLTPRE 178

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           VE L  I++G ++ EIA  L +   T+  ++  +  K   + R+ A+ YA R+ +
Sbjct: 179 VEVLALIAQGLSNREIARRLVVGEATIKTHVNHLFAKAGLRDRAQAVNYAYRHGL 233


>gi|311742864|ref|ZP_07716672.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311313544|gb|EFQ83453.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 216

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 5/155 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +S  ++       P  L    F              + +         +   + L    
Sbjct: 65  GISATEQIVAAGGAPKVLILTTFDDDAHLFAALQAGASGFLLKNCPPDDLVQAIRLAAEG 124

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++  +    +  +A   +      D   G+  ELT RE + L  ++ G ++ EIA  L
Sbjct: 125 HSLLAPEVTQRV--IARSTSRAAPEAD---GRLDELTERERDVLVLLARGHSNAEIAGEL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +S  TV ++++ I+ K   + R  A+  A  N +
Sbjct: 180 YVSAATVKSHVSHILAKLEVRDRVQAVILAFENGL 214


>gi|238064526|ref|ZP_04609235.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237886337|gb|EEP75165.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 229

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 10/171 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + +   D      +   +   PV       F      +       + + +   
Sbjct: 58  PDVVLMDIRMPRMDG-VAATRAIVDARLPVRVLILTTFDLDEYVVGALRAGASGFLAKDV 116

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++    L    LL  +   +             LT RE E L 
Sbjct: 117 PAEDLITAIRTVAAGDAVVAPRILKR--LLDRFADALPDPAATPPKALNALTEREREVLV 174

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A+ +A  + +V
Sbjct: 175 QVARGLSNAEIARELTVSETTVKTHVGHVLTKLGLRDRVQAVVFAYESGLV 225


>gi|229492199|ref|ZP_04386007.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229320825|gb|EEN86638.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 205

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              +  L+ RE+E L  ++ G+++ EI   L +S  TV +++  I  K   K+R+ A+A 
Sbjct: 139 RKPETSLSPREIEVLKLVAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVAR 198

Query: 240 AVRNNIV 246
           A     +
Sbjct: 199 ARELGSI 205


>gi|239825932|ref|YP_002948556.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239806225|gb|ACS23290.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70]
          Length = 556

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 8/120 (6%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------- 184
           ++F V     G+M +  K     ++    +  L      + K       K          
Sbjct: 427 ISFSVHEHVHGVMAVHLKDIEAAKEAEVYVAALIGIGTMVMKQNTYQTPKQELNIDMLSE 486

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ L  + +G ++ EIA  L IS +TV N+I +I +K     RS  IA   + N
Sbjct: 487 RLTTREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQLN 546


>gi|91786468|ref|YP_547420.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91695693|gb|ABE42522.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 297

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  LT RE E L+W+++GKT+ +I  ILG+S  TVN ++  I  K   +TR
Sbjct: 235 NAALTPRETEVLSWLAKGKTNKDIGDILGMSHRTVNKHLEHIFEKLGVETR 285


>gi|37520382|ref|NP_923759.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211375|dbj|BAC88754.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 212

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 17/137 (12%)

Query: 112 VFHTLPENITPPAGMD--NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
           VF  L                  L   VA +R G   L P    I    L ++G +    
Sbjct: 90  VFGALAAGADGYCLKATAGIASRLLAAVASVRDGAAWLDPD---IADRVLRDLGRI---- 142

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                      G D  L+ RE+E L  I++G T+ EI   L I+  TV  ++++I+ K  
Sbjct: 143 --------PQAGADNPLSEREMEVLKLIADGLTNAEIGRRLYIASGTVRVHVSNIIAKLG 194

Query: 230 TKTRSGAIAYAVRNNIV 246
              R  A   A+R   +
Sbjct: 195 VNDRVQAAVRALREGWI 211


>gi|301385893|ref|ZP_07234311.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061837|ref|ZP_07253378.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302130857|ref|ZP_07256847.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 149

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           ++ ++  L     +   +    +    +L+ REVE L W+++GKT + I  +LG++  TV
Sbjct: 61  KMSKLVRLTHACLSEIITLSPPYNPLEKLSTREVEVLKWVADGKTGEVIGKVLGVTERTV 120

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  +IM+K     ++ A   A    I+
Sbjct: 121 THHTVNIMQKLNATNKTAAAVKAALLGII 149


>gi|284043929|ref|YP_003394269.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948150|gb|ADB50894.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 221

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 16/222 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R+  +D        +  +     A  F +V      ++ ++ +  +  P  ++  + +
Sbjct: 1   MIRVALVDDQAIVRAGLARILS--PADGFDVVAECADGQEAVERL-PALRPDVVLMDVRM 57

Query: 93  SEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
              D       R  +   P        F                +         +   + 
Sbjct: 58  PRLDG-IAATARLRDADDPAAVLVLTTFGEDDVLWGAIEAGAAGFVLKDSSAEELIAAVR 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSD 204
            +   G          +            +     G   EL T RE + L  ++ G T+ 
Sbjct: 117 AVAGGGAWFDPGVAPRV----LDHYRRLVAPAAREGTRLELLTEREHDVLRLMARGATNA 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L ++  TV  ++ SI  K   + R+ AI YA  + ++
Sbjct: 173 EIAATLFVAEATVKTHVGSIFSKLDVRDRAAAIVYAYDHGVI 214


>gi|238026711|ref|YP_002910942.1| acylhomoserine lactone dependent transcriptional activator
           [Burkholderia glumae BGR1]
 gi|237875905|gb|ACR28238.1| Acylhomoserine lactone dependent transcriptional activator
           [Burkholderia glumae BGR1]
          Length = 241

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 17/184 (9%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-----FHTLP-------ENITPPAGM 126
            S +P  L +        +   V+    +   P      F           + +    G+
Sbjct: 52  LSSYPIRLQQEYRRRALHRVDPVVLHAIQSVAPFSWAEAFRQQRVPDPSEFDALRREFGL 111

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFKSYDVHWG 181
            + Y     D  +    L      GR   R  +  +       L  + + +         
Sbjct: 112 HDGYVFTVHDPYQYVGMLSFFNRGGRPEFRAEIERVKGAMQLALVLFHSRINAKPPDSRH 171

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE   L W + GK+  EIA I GI   TV  ++A++++K    T   A+  A 
Sbjct: 172 RVESLTLRERTVLKWAAMGKSYSEIADICGIRERTVKYHMANVVQKLDVSTAKQAVIVAS 231

Query: 242 RNNI 245
           R  +
Sbjct: 232 RLGL 235


>gi|290957262|ref|YP_003488444.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646788|emb|CBG69885.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 2/100 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           LF   R     R      +A+      +S      +   L+ RE E L  ++ G  + EI
Sbjct: 126 LFTAVRAAAEGRTVLSPAVASRLVTAVRSPRTPGSEP--LSAREREVLALVARGTANREI 183

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 184 ARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 223


>gi|305679871|ref|ZP_07402681.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305660491|gb|EFM49988.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 223

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 62/188 (32%), Gaps = 14/188 (7%)

Query: 71  EQKLDSIVSSD--WPFDLVRCMALSEKDKYYNVLQRP--------TELFCPVFHTLPENI 120
           +  LD+I  +    P  ++  + + E D      +            L    F      +
Sbjct: 34  DTGLDAIAMAQRLQPDVVLMDIRMPELDGIAATEKICGNPDLAATRVLILTTFENDTNIV 93

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +     +   +   +  +     ++         L+           + + 
Sbjct: 94  AALRAGASGFIGKGSEPEELARAVRAVANGDALLSPSATR--SLITRMLQPTEADPEPYA 151

Query: 181 GKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +    LT RE E L  +++G ++ EIA  L IS +T   ++ +IM K     R+  + 
Sbjct: 152 NPELIDALTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVI 211

Query: 239 YAVRNNIV 246
               + +V
Sbjct: 212 VGYESGLV 219


>gi|21225370|ref|NP_631149.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783610|ref|ZP_05522041.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767492|ref|ZP_06526870.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7688304|emb|CAB89760.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289697691|gb|EFD65120.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 74/226 (32%), Gaps = 18/226 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++  D           L +   +   + V  +    Q+  ++     P  ++  + 
Sbjct: 1   MTIRVLLADDQALLRATFRILID---SDPHMTVVAEAADGQEAVALTLEHRPDVVLMDIR 57

Query: 92  LSEKDKYY--------NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +   D             L     L    F              + +         +  G
Sbjct: 58  MPGTDGLAATAGICARTDLSGTRVLILTTFEDDENVALALRSGASGFLGKDVGPDVLLAG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEG 200
           +  +     ++         L+  + A+   + DV       L   T RE E +   + G
Sbjct: 118 IRTVAAGDSLLSPTATR--ALITRFLAS--PTDDVPLAAPERLALLTEREREVMALAALG 173

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K++ EIA  L +S  TV ++++  M K   + R+  +  A ++ +V
Sbjct: 174 KSNQEIADHLVVSPLTVRSHVSRAMTKLNARDRAQLVVIAYQSGLV 219


>gi|325283032|ref|YP_004255573.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324314841|gb|ADY25956.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 219

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 13/133 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          +     L   V  +  G  +L P              ++A + A 
Sbjct: 93  VFAALEAGAAGYLLKEASEDELLRAVRAVAAGESVLHPSIAR---------KVMARFSAQ 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                D+      +L+ RE+E L   + G ++ EIA  LGIS  TV  ++ ++  K    
Sbjct: 144 APAEMDLTE----DLSPRELEVLRAAARGGSNKEIARALGISPRTVQVHLGNVFSKLNVG 199

Query: 232 TRSGAIAYAVRNN 244
           +R+ A+   +R  
Sbjct: 200 SRTEAVLAGIRRG 212


>gi|224552915|gb|ACN54696.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           + ++R      L          Y  H   K+  L+ RE + L W+  GKT  E+AVIL I
Sbjct: 115 MEKNRSKIFSFLINLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSI 174

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV  ++ ++M+K      + A+       ++
Sbjct: 175 AERTVKFHMGNVMKKLGVNNATHAVKLGTELRLL 208


>gi|159897633|ref|YP_001543880.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890672|gb|ABX03752.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 218

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 8/161 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L+  +   E  +        T++     ++  E I P          L        +  +
Sbjct: 59  LMPGIDGVEATRQVRGASPHTQVIVLTSYSEDERIFPAIKAGALSYLLKDVGPDALVAAI 118

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +G   L   +    L+    ++     D        LT RE E LT I+ G ++ E
Sbjct: 119 RAARRGEATLHP-MVASRLMTELTSSRRSPLDT-------LTEREREVLTCIARGMSNAE 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L I   TV  ++++I+ K   + R+ A   A+R  +V
Sbjct: 171 IAEHLVIGERTVKTHVSNILSKLHLQDRTQAAIMALRERLV 211


>gi|271969975|ref|YP_003344171.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513150|gb|ACZ91428.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  + +    +       +    F              + +     
Sbjct: 49  DVVLMDIRMPELNGLEAARQIIADDGPAVTKVIILTTFDLDDYVYGALRAGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +  G+ ++     +I         L+A +   + +       +   LT RE E LT
Sbjct: 109 EPAELIHGIKVVARGDALIAPSVTRR--LIAEFAGRVKRP--EPGPEFNGLTEREREVLT 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++DEIA  L +S  T   +++ IM K   + R+  +  A    +V
Sbjct: 165 LVAGGLSNDEIAARLVLSPATAKTHVSRIMTKLHARDRTQLVVLAYEAGVV 215


>gi|229820968|ref|YP_002882494.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566881|gb|ACQ80732.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 208

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 1/135 (0%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V    P  +       +       +    R  L+   P   +    R    G +A   A 
Sbjct: 73  VAAGGPPVLILTTYDTDADILAAIEAG-ARGYLLKEAPTEELAQAIRAAAAGEVALGPAV 131

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +           LT RE+E L  ++ G+++D++A  L +SR TV  ++A +  K    
Sbjct: 132 QRRLLGRMRSPGLALTRRELEVLELVARGRSNDDVARELFLSRATVKTHLAHVYDKLGVD 191

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A+A A +  ++
Sbjct: 192 SRTAAVAVARQRGLL 206


>gi|271962774|ref|YP_003336970.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505949|gb|ACZ84227.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 212

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 5/141 (3%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +   G  +   RL    +L
Sbjct: 77  RFLALSVSDAAEDVIGVIRGGARGYVTKTISGRELTDAIRRVA-DGDAVFSPRLAGF-VL 134

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ ++     D        LT RE E L  I+ G    EIA  L IS  TV  +++S++
Sbjct: 135 DAFASSEAPPIDPELD---SLTQREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVL 191

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R     +A    +V
Sbjct: 192 RKLQLSNRHELSRWATARRLV 212


>gi|182436531|ref|YP_001824250.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777153|ref|ZP_08236418.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465047|dbj|BAG19567.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326657486|gb|EGE42332.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 231

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +           L
Sbjct: 96  RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSP-------RL 148

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 149 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 208

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 209 VLRKLQLSNRHELTRWATARRLV 231


>gi|172040144|ref|YP_001799858.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171851448|emb|CAQ04424.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 264

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 40/62 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I++G+++ EIA  L IS  TV  ++  ++ KT ++ R  A+ +A++++
Sbjct: 193 PLTRREREILCLIAKGQSNQEIAEKLFISLPTVKTHVGRVLMKTGSRDRVHAVLFALKHH 252

Query: 245 IV 246
           +V
Sbjct: 253 LV 254


>gi|311279344|ref|YP_003941575.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308748539|gb|ADO48291.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 237

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 14/199 (7%)

Query: 55  YVGASHFLLVRWDLFQEQKL---DSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTE 107
             G +++       ++E+ L   D +V +      PF     + +     +  +  + ++
Sbjct: 42  IFGVTNYPDEWVTQYKEKGLQYTDPVVITALNRLTPFSWNEKLLVRSDFNFEKLFIQASQ 101

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
                 +T   +      +   +       A I   L+       ++L         L +
Sbjct: 102 FGIINGYTFVLHDNQNNLVTLSFIIPAAKGAEIMELLIQHKGDISLLLASVHETYLTLTS 161

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                    +    K  + T RE E L W S GKT  E  +ILGI   TV  ++++I++K
Sbjct: 162 L-------SEKDTDKHSQFTPRENEILHWTSLGKTYQETGMILGIKVRTVKFHMSNIVKK 214

Query: 228 TATKTRSGAIAYAVRNNIV 246
                   A+   V   ++
Sbjct: 215 MGVANARHAVRLGVELQLI 233


>gi|302534040|ref|ZP_07286382.1| two component system response regulator [Streptomyces sp. C]
 gi|302442935|gb|EFL14751.1| two component system response regulator [Streptomyces sp. C]
          Length = 237

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 9/193 (4%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA  + L R      ++   +V  D        +A +        L     +    F   
Sbjct: 46  GAQAYALAR------ERRADVVLMDIRMPGTDGLAATRMISADPELSDVRVVMLTTFEVD 99

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR---LWEIGLLAAYQANMF 173
                      + +     +   +   + +      ++       L    L    +A+  
Sbjct: 100 EYVAAALRAGASGFLGKGAEPDELLNAIRVAHAGEALLSPAATKGLIASFLAQGGRADAP 159

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +   H  +   LTGRE E L  ++ G ++D IA  L +S  TV  ++   M K   + R
Sbjct: 160 ATGTAHAERLATLTGREREVLVQVAGGLSNDGIAARLEVSPLTVKTHVNRAMAKLGARDR 219

Query: 234 SGAIAYAVRNNIV 246
           +  +  A  + +V
Sbjct: 220 AQLVVIAYESGLV 232


>gi|163735012|ref|ZP_02142449.1| two-component response regulator, putative [Roseobacter litoralis
           Och 149]
 gi|161391794|gb|EDQ16126.1| two-component response regulator, putative [Roseobacter litoralis
           Och 149]
          Length = 303

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 174 KSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           +  D H  +  E    LT RE E L W+S GK + +IA IL +S  T+N ++  + +K  
Sbjct: 226 QKRDAHPYQQLEEVFGLTPREAEVLYWLSLGKPNRDIAQILSLSSRTINKHLEQVFQKMG 285

Query: 230 TKTRSGAIAYAVR 242
              R+ A   A R
Sbjct: 286 VDNRTAAAVAADR 298


>gi|27802473|gb|AAO21111.1| BisR [Rhizobium leguminosarum bv. viciae]
          Length = 246

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 74/206 (35%), Gaps = 18/206 (8%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV--- 112
           V    F L R     +      V + +P   V    L++      +++       P    
Sbjct: 36  VDFVTFHLART--IVDSVDAPFVRTTYPDSWVSRYLLNDYINVDPIIREGFSRQLPFDWR 93

Query: 113 --------FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR--IILRDRLWEI 162
                      + +      G +     +     R  + +           I R  L E 
Sbjct: 94  EIDIPDSAHQFMVDAEMHGIGGNGVSIPIVDKSRRSLLSINSQMSDEEWTAIERQFLPEW 153

Query: 163 GLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
             L  +  +    +++H   D    L  REVECL W S GK S +IA ILG+S +T   Y
Sbjct: 154 TEL-GFLLHRKAVFELHGENDPVPALGTREVECLHWASRGKDSKDIAEILGLSEHTARGY 212

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           + S   K    T S AIA+AV  N++
Sbjct: 213 LKSARYKLGCPTLSAAIAHAVHLNLI 238


>gi|46275753|dbj|BAD15091.1| probable transcriptional regulator [Pseudomonas azotoformans]
          Length = 202

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLM--LLFPKGRIILRDR---LWEIGLLAAYQANM---FKSYDVHWGKD 183
           S+   + R     +  L     R +L+D    L + GL++           S ++     
Sbjct: 78  SVPIHLPRGGFASLTGLRTGNARNVLQDAQQTLSDFGLISHALQEAAYPLFSKELRTYPH 137

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL W ++G T+ EIA  L  S   V  ++AS M K   K R  A+  A   
Sbjct: 138 IHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHY 197

Query: 244 NIV 246
            ++
Sbjct: 198 RLL 200


>gi|264677722|ref|YP_003277628.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|299530281|ref|ZP_07043706.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|262208234|gb|ACY32332.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|298721652|gb|EFI62584.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 253

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 68/181 (37%), Gaps = 10/181 (5%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +R   F    LD  + +D   +L+  M          V+    E    V H      T  
Sbjct: 81  IRQHEFDVMLLDLKLGADDGLELIEVMKSQRPQAEVIVVSV-VETEEQVLHAFELGATGY 139

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              ++ + +    V ++  G   + P     L  RL     L  Y            G  
Sbjct: 140 LVKNSWFGNYPQAVLQVVNGGASITPS----LARRL-----LQRYDKRPATGAVPGSGMS 190

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  ++ G TS EI V L IS  TVN +I +I RK   +TR+ A+ +A   
Sbjct: 191 DRLSSRECEVLRMVASGNTSAEIGVQLEISTMTVNTHIKNIYRKLQVRTRAQAVRFAYLR 250

Query: 244 N 244
            
Sbjct: 251 G 251


>gi|291303524|ref|YP_003514802.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572744|gb|ADD45709.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 217

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 10/144 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y + T   + +   +  +     +           L
Sbjct: 81  KFLALSVSDAAEDVIGLIRAGARGYVTKTIAASELVAAIRRVAEGDAVFSP-------RL 133

Query: 166 AAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           A +  + F S       D EL   T RE E L  ++ G    EIA  L IS  TV  +++
Sbjct: 134 AGFVLDAFASKSQAPASDPELDQLTNREREVLRLLARGYAYKEIARELYISIKTVETHVS 193

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK     R     +AV   IV
Sbjct: 194 NVLRKLQMSNRYELSRWAVDRRIV 217


>gi|282861209|ref|ZP_06270274.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563867|gb|EFB69404.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           LF   R     R      +A+      ++     G+   L+ RE E L  +++G ++ EI
Sbjct: 120 LFTAVRAAADGRTVLSPAVASRLITRVRTPAAPGGE--ALSTREREVLALVAKGTSNREI 177

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A +L IS  TV  ++  +  K   K R+ A+A      I+
Sbjct: 178 AAVLFISEATVKTHLTHVFAKLGAKDRAAAVALGYERGIL 217


>gi|290958644|ref|YP_003489826.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648170|emb|CBG71278.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +          L    F              + +        ++   + ++   
Sbjct: 66  GIEATRRITTERPHIRVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAG 125

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++         L+A +             +  +LT RE E L+ I++G ++ EIA  L
Sbjct: 126 DALLAPGVTRR--LIAEFSRLGTAPRAPLKERVGDLTERETEVLSLIAQGLSNAEIAQSL 183

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 184 VVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 219


>gi|302559284|ref|ZP_07311626.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302476902|gb|EFL39995.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 223

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + + + D      +   +   P       F       +      + +         +  
Sbjct: 55  DVRMPKLDGVETTRRICADTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201
            +  +     ++         LL  +   +  +      ++ E LTGRE E +  +++G 
Sbjct: 115 AIRAVHSGDAVVAPSTTRR--LLDRFAPMLPGTGKQDGHQELERLTGREREVMVLVAQGL 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|302537766|ref|ZP_07290108.1| two component system DNA binding response regulator [Streptomyces
           sp. C]
 gi|302446661|gb|EFL18477.1| two component system DNA binding response regulator [Streptomyces
           sp. C]
          Length = 209

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 10/163 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +        +  RP      V  T   +    A ++                
Sbjct: 54  MDLQFGAGMHGSAATAAITARPGAPRVLVLTTYDTDADILAAVEAGASG----------Y 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   +    R    G  A   A   +  D        LT RE+E L  +++G ++
Sbjct: 104 LLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADGLSN 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I+  L +S+ TV +++  +  K    +R+ A+A A    ++
Sbjct: 164 QQISKRLFLSQATVKSHLVHVYAKLGVDSRTSAVAAAATRRLI 206


>gi|182439176|ref|YP_001826895.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779828|ref|ZP_08239093.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178467692|dbj|BAG22212.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660161|gb|EGE45007.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 234

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 7/137 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           LT  V     G  +  P    ++   L E   LA+ 
Sbjct: 102 HADVLEAVKSGATGYLLKSASTQELTDAVRSTAAGDPVFTPGLAGLV---LGEYRRLASD 158

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A +      +  K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 159 PAPVA----SNEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 214

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 215 QLHNRVELVRYAIERGL 231


>gi|221069868|ref|ZP_03545973.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220714891|gb|EED70259.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 230

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 10/162 (6%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL+  +  ++      V+         +   L          +     +T  +  +  G 
Sbjct: 78  DLISQLRAADPGMGILVIS-AWSTEDAILSALRAGANGYVLKERDDLEVTLSIRSVLRGG 136

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             + P    I R  + E+      +A+     +        L+ RE++ L  +++G T+ 
Sbjct: 137 APIDP---FIARRIIAELQPAQPTEAHKAMPPEAV------LSTRELQILKLVADGMTNR 187

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +SR TV  ++ +I RK A  +R+ A++ A    ++
Sbjct: 188 EIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARGLL 229


>gi|302549920|ref|ZP_07302262.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467538|gb|EFL30631.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V+ D    L+  +  +       V   P  L    F              + +     
Sbjct: 50  DVVAMDVRMPLLDGIEATRALLR-TVDDPPRILVVTTFENDEYVYEALRAGADGFLLKRA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A I   + L+     ++    + ++   A Y             +  +LT RE E L 
Sbjct: 109 RPAEIVHAVRLIAEGDSLLFPASVRQLA--AEYGDEGGNRAARAAMERAQLTEREAEVLR 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV +++++++ K   + R+ A+  A  +  V
Sbjct: 167 LMARGLSNAEIAGRLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217


>gi|254519325|ref|ZP_05131381.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913074|gb|EEH98275.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  L  IS+G  + EIA  L +S  TV NYI SI +K   + R  A  YA+RNNI
Sbjct: 158 LTNRELNILYEISKGLKNKEIAEKLFLSEKTVKNYITSIFKKIEVEDRVQATIYAIRNNI 217


>gi|159027236|emb|CAO89331.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 234

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT RE+E L  I  G ++ +IA  L I+  TV  ++ +I+ K +   R+ A   A+
Sbjct: 169 ENVPLTERELEILALIVGGFSNAQIADRLYITIGTVKTHVRNILNKLSVDDRTQAAVLAL 228

Query: 242 RNNIV 246
           R+ +V
Sbjct: 229 RSGLV 233


>gi|94500443|ref|ZP_01306975.1| regulatory protein CsgD [Oceanobacter sp. RED65]
 gi|94427478|gb|EAT12456.1| regulatory protein CsgD [Oceanobacter sp. RED65]
          Length = 216

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 147 LFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +    R ILR  LW    +L+ + AN  +           LT RE + L+  + G  + +
Sbjct: 112 VSKGIRSILRGELWFSRRILSQFMANNRRPPAPEQKPAHNLTRRESQILSLSASGAKNAD 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           IA  L +S +TV  ++ ++ +K     R  A+ +A
Sbjct: 172 IAAALNVSTHTVKTHMYNLFKKLDVSNRIQAVNWA 206


>gi|322688905|ref|YP_004208639.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460241|dbj|BAJ70861.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 299

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N +
Sbjct: 239 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 298

Query: 246 V 246
           V
Sbjct: 299 V 299


>gi|297562061|ref|YP_003681035.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846509|gb|ADH68529.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 218

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKT 202
           LL    R+   + ++  GL         +       ++ E   LT RE E L  +++G  
Sbjct: 114 LLDAVRRVHAGEAVYTPGLAGLVLGEYRRLSSADRSREPEAPELTPRETEVLRLVAKGLA 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +IA  LGIS  TV N++ + + K     R   + YA+   +
Sbjct: 174 YKQIAQRLGISHRTVQNHVQNTLTKLHLHNRVELVRYAIDRGL 216


>gi|319947541|ref|ZP_08021771.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746229|gb|EFV98492.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 211

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 11/123 (8%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y   T     I   +  +      I      E+     Y+ N  + +D      
Sbjct: 95  DAGAKGYMLKTSSAEEILRAIHKVEQGELAIET----EVSQKVEYRKNHVELHD------ 144

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA ++
Sbjct: 145 -DLTARERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQH 203

Query: 244 NIV 246
           ++V
Sbjct: 204 HLV 206


>gi|254476925|ref|ZP_05090311.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
 gi|214031168|gb|EEB72003.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
          Length = 203

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 69/195 (35%), Gaps = 13/195 (6%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTELFC 110
           L    G S          QE+     + +D PFDL+     +   D           LF 
Sbjct: 20  LESEGGMSTCAANSLPAAQER-----METDGPFDLILLDYNMPGMDG-------LQGLFD 67

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
            +     + +   +G  +R  +     A     +    P   +I   R   +G   A   
Sbjct: 68  TMAMNGGQRVALISGQASREVAEQALDAGAAGFVPKTLPAKSMINAVRFMAMGEQYAPID 127

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M    D        L+ RE+E L  +SEGK + EIA  L I+  TV  ++ S+ RK   
Sbjct: 128 FMTAVEDTPCPLTSTLSPREIEMLRGLSEGKANKEIARDLNIAEPTVKLHMKSLYRKMKV 187

Query: 231 KTRSGAIAYAVRNNI 245
             R+ A   A    +
Sbjct: 188 SNRTQAALVARDKGL 202


>gi|196232652|ref|ZP_03131504.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223414|gb|EDY17932.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 220

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 6/178 (3%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           F E     IV  D     +  +  + +   +    R   +     H   + +        
Sbjct: 47  FAEDLAPDIVILDLSMPELNGLEAARRIAAHCPRSR---MLMLTMHETEQFVREALAAGV 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
           R   L  D  R     +    +G      RL      A +     +           LT 
Sbjct: 104 RGYILKTDAGRDLANAVDALIRGETFFASRLAATIYAAEFAGMGRRR---RSKSQAGLTP 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  ++EG+ + ++   L IS  T   + A IM K    + +  + YA+RN ++
Sbjct: 161 REREILQLLAEGRKNRDVGKALNISVKTAETHRARIMAKLGIDSVADLVRYAIRNGLI 218


>gi|256785730|ref|ZP_05524161.1| two-component system DNA-binding response regulator [Streptomyces
           lividans TK24]
 gi|289769622|ref|ZP_06529000.1| two-component system DNA-binding response regulator [Streptomyces
           lividans TK24]
 gi|289699821|gb|EFD67250.1| two-component system DNA-binding response regulator [Streptomyces
           lividans TK24]
          Length = 251

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 10/147 (6%)

Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +RP   L   V     + I    G    Y + T     +   +  +     +        
Sbjct: 112 ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVNSVFRVQEGDAVFSP----- 166

Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              LA +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +
Sbjct: 167 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLYISVKTVES 224

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++RK     R     +A    +V
Sbjct: 225 HVSAVLRKLQLSNRHELTRWATARRLV 251


>gi|196229558|ref|ZP_03128423.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226790|gb|EDY21295.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 210

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 56/172 (32%), Gaps = 19/172 (11%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTL--PENITPPAGMDNRYCSLT 134
              P  ++  + L   +          E       +F T    E+I        R   L 
Sbjct: 50  KHHPDVVLMDLRLPGANGTAATADLRREWPDARVLMFTTFDGEEDIYRAMQAGARGYLLK 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                       L    R +          LA   A    + DV        + RE E L
Sbjct: 110 SAARE------ELLSAIRAVAAGERHLSAALAQRLAGRVAAPDV--------SDREREVL 155

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I+ GK + EIA  LGIS  TV  + +++  K     R+ A +  +R  ++
Sbjct: 156 QLIARGKANKEIAAALGISEETVKRHASNLFVKMGVADRAQATSEGIRRGLI 207


>gi|298717240|ref|YP_003729882.1| transcriptional activator protein PagR [Pantoea vagans C9-1]
 gi|298361429|gb|ADI78210.1| Transcriptional activator protein PagR [Pantoea vagans C9-1]
          Length = 230

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 162 IGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +  L          Y  H   K+  L+ RE + L W+S+GKT  EIA+IL I+  TV  +
Sbjct: 143 MSFLIHLHQKTLNLYSQHQQKKNAFLSPRERQILKWVSDGKTYAEIAIILSIAERTVKFH 202

Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244
           + ++M+K           +A++  
Sbjct: 203 MGNVMKKLGVNN----ARHAIKLG 222


>gi|296453955|ref|YP_003661098.1| LuxR family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183386|gb|ADH00268.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 286

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N +
Sbjct: 226 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 285

Query: 246 V 246
           V
Sbjct: 286 V 286


>gi|256389407|ref|YP_003110971.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256355633|gb|ACU69130.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 222

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 45/140 (32%), Gaps = 13/140 (9%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +    V   +    T     D     L   V     G  +L P              +  
Sbjct: 95  DTESDVLPAIEAGATGYLLKDAPREDLIRAVRAAAAGQPVLAPT-------------VAQ 141

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                +             LT RE+E L  ++ G T+ E A  L IS  TV  ++     
Sbjct: 142 RLMTRVQTPLAEPAPPGDALTERELEVLRLVASGTTNRETARKLFISEATVKTHLLHAYA 201

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   + R+ A+A A +  ++
Sbjct: 202 KFGVRDRAAAVAEAYKRGLL 221


>gi|225020347|ref|ZP_03709539.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946736|gb|EEG27945.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 223

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 62/188 (32%), Gaps = 14/188 (7%)

Query: 71  EQKLDSIVSSD--WPFDLVRCMALSEKDKYYNVLQRP--------TELFCPVFHTLPENI 120
           +  LD+I  +    P  ++  + + E D      +            L    F      +
Sbjct: 34  DTGLDAIAMAQRLQPDVVLMDIRMPELDGIAATEKICGNPDLAATRVLILTTFENDTNIV 93

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +     +   +   +  +     ++         L+           + + 
Sbjct: 94  AALRAGASGFIGKGSEPEELARAVRAVANGDALLSPSATR--SLITRMLQPTETDPEPYA 151

Query: 181 GKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +    LT RE E L  +++G ++ EIA  L IS +T   ++ +IM K     R+  + 
Sbjct: 152 NPELIDALTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVI 211

Query: 239 YAVRNNIV 246
               + +V
Sbjct: 212 VGYESGLV 219


>gi|111017172|ref|YP_700144.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110816702|gb|ABG91986.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 219

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F      +       + +         +   +  +     ++         LLA +  + 
Sbjct: 85  FDLDEHAMGALRAGASGFLLKDTPSEDLVSAIRSVAAGDAVVSPKVTRR--LLAKFLDDG 142

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                     D  LT RE E L  ++ G ++ EIA  L +S +T+ +++  I+ K   + 
Sbjct: 143 PGPLRDPEVLDV-LTEREREVLQLVATGLSNTEIAGQLFLSESTIKSHVGRILTKLNVRD 201

Query: 233 RSGAIAYAVRNNIV 246
           R  A+  A    +V
Sbjct: 202 RVQAVVLAYETGLV 215


>gi|284046383|ref|YP_003396723.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950604|gb|ADB53348.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 224

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 11/171 (6%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNRYCSLTF 135
           P   V  + +   D      +R  +    V       FH             + +     
Sbjct: 48  PDVAVMDIRMPHVDG-IEATRRLQQRMPDVRVLVVTTFHLDEYVHEALRAGASGFLLKDT 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++      +  L+  Y         +  G+  ELT RE++   
Sbjct: 107 APDSLVDAVRTVAAGDALLSPAVTRQ--LIEHYVQRPTPDAGL-TGRLAELTPRELDVAR 163

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G T+ EIA  L +   TV  ++ SI+ K A + R+  +  A  + +V
Sbjct: 164 LVARGMTNAEIAAELFLGEGTVKTHVTSILSKLALRNRTQIVVAAYESGLV 214


>gi|296139697|ref|YP_003646940.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027831|gb|ADG78601.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 229

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 7/175 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
            +V S  P  L+  + +   D              T +     +   E+I        R 
Sbjct: 50  DLVLSLRPAVLLTDLRMPNLDGVGATERVVAAAPATAVILLTTYDDEESILRGLHAGARG 109

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                         +     G+ +L   + +   L A                 +LT RE
Sbjct: 110 YLTKNAGRAEIAAAISAAAAGQSVLDPAVQQ--RLLASITATPAPAQAAGTPPVDLTPRE 167

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E L  I+EG  + +IA  L +S +TV  +I ++  K   + R+ A+ YA    I
Sbjct: 168 TEVLQLIAEGLANRDIAARLFVSESTVKTHINNLFAKAHLRDRAHAVRYAFDTGI 222


>gi|71907077|ref|YP_284664.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71846698|gb|AAZ46194.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 308

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           F LT RE E L W+ +GKTS++I  ILG S  TVN ++  +  K   +TR+ A   A+
Sbjct: 245 FRLTQREAEVLYWVVQGKTSNDIGDILGNSPRTVNKHLEHVFEKLGVETRTAAANLAM 302


>gi|226305875|ref|YP_002765835.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184992|dbj|BAH33096.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 220

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  +         + P  +       + + +     +      L  
Sbjct: 50  DVVLMDVRMPEMNGLDAAR-QILSAGWEPPVRVLMLTTFDIDDYVYEALSVGASGFMLKD 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A   I  + +  +G+ +L   +     L A   +   +          LT RE E L 
Sbjct: 109 APAEELIRAVRVVAEGQALLAPTVTR--RLIADVTSRRAAPRARPAALDALTPREREVLE 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L ++  TV  ++  ++ K   + R+ A+  A  + +V
Sbjct: 167 LIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 217


>gi|116694572|ref|YP_728783.1| response regulator [Ralstonia eutropha H16]
 gi|113529071|emb|CAJ95418.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 235

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---E 185
            Y     D   I + +      G  I       I  L A  A +     +H  +      
Sbjct: 114 GYLLKERDDLEISLSIRSALRGGAPIDPFVARHILDLVATTAPLPGGAQIHARRLVGASP 173

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ + +G T+ EIA +L +SR TV  +I +I +K A  +R+ A+  A  + +
Sbjct: 174 LSAREIEILSLVGKGLTNREIADLLSLSRLTVECHIRNIYKKLAVHSRTQAVFEARAHGL 233

Query: 246 V 246
           +
Sbjct: 234 L 234


>gi|325677563|ref|ZP_08157226.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325551634|gb|EGD21333.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 206

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 10/160 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +   +    +     E    VF T   +      +D          +  +  
Sbjct: 53  MDLALGTGIDGVEAIRRIRAARPEQPVLVFTTYDTDADVVRALDAGAIGYLLKDSAPQD- 111

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              +F   R  +  R      +A+   +  +  D        LT RE E L+ ++EG T+
Sbjct: 112 ---IFGAIRDAVAGRSVLSPPVASRVLDRMRRPDQA------LTAREAELLSLLAEGLTN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E+   L IS  TV  ++A I  K    +R+ A++ A+R 
Sbjct: 163 KELGKRLFISEATVKTHLAHIYAKLGVDSRAAAVSIALRR 202


>gi|282866345|ref|ZP_06275390.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282558741|gb|EFB64298.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 224

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 9/165 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + +   D      +   +   P       F       +      + +       A +  
Sbjct: 55  DVRMPRLDGVEATRRICAQTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLS 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201
            +  +     ++         LL  +   +  S      K  E LT RE E +  +++G 
Sbjct: 115 AIRSVHSGDAVVAPSTTRR--LLDRFSPMLPSSGREPQHKHVERLTEREREVMLLVAQGL 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 173 SNGEIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|226305274|ref|YP_002765232.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184389|dbj|BAH32493.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 210

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 44/95 (46%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R I      E    +   + + +S +        LT RE+E L  ++ G ++ +I   L 
Sbjct: 116 RAIRAVSRGESAFDSRSASAVVRSLNGQSSSKERLTDRELEVLRLLANGLSNIKIGERLF 175

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  ++++IMRK     R+ A+  A +  ++
Sbjct: 176 ISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 210


>gi|297196049|ref|ZP_06913447.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197723312|gb|EDY67220.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 219

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 47/88 (53%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L+   + A  +  + ++   H   D  LT RE E L  ++EG++S +IA IL IS  TV 
Sbjct: 130 LYPGAVTALIRNYLDRARQGHETPDQILTAREEEVLKLVAEGRSSKDIAEILFISVKTVQ 189

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + A+++RK   + R     YA+R  ++
Sbjct: 190 RHRANLLRKLGLRDRLDLTRYAIRAGLI 217


>gi|229490268|ref|ZP_04384110.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229322800|gb|EEN88579.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 224

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +   G   R   L   V  +  G  LL P         +    L+  +  +
Sbjct: 93  VAQAIRAGASGFIGKGIRAEDLLDAVRTVASGNSLLSP---------IATSALITRFL-S 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +    D   G   +LT RE+E +T ++ G ++DEIA  L IS  T   ++   M K   +
Sbjct: 143 IPSRADSTSGIFGQLTPRELEVVTLVAMGMSNDEIAAELVISAVTAKTHVNRAMTKLDVR 202

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A +  +V
Sbjct: 203 DRAQLVVLAYQCGLV 217


>gi|330985566|gb|EGH83669.1| LuxR transcriptional regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 247

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           + +  ++ S++P   ++    S       +++       P F     N       D+   
Sbjct: 52  RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 111

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   + +     R+ E        L  +   + K
Sbjct: 112 RSAQYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 171

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H         +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   
Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231

Query: 231 KTRSGAIAYAVRNNIV 246
           +T   A+  A+   +V
Sbjct: 232 RTAKQAVYKAINMGMV 247


>gi|77918586|ref|YP_356401.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544669|gb|ABA88231.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM
           2380]
          Length = 223

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 2/123 (1%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKD 183
              + Y   + D+  +   L+  F  G   +   L ++ +   A +       D     D
Sbjct: 101 AGADGYVLKSIDINELAD-LIRAFSCGEHPMSPYLMDLAVDWHASEQEEESPADKDDESD 159

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L+ +++G+ + EI+  L IS  TV  +I +I +K   K+R  A+  A   
Sbjct: 160 AFLTRREQQILSCLAQGQGNKEISNALFISTETVKTHIKNIFKKLEVKSRLEAVIAAKEK 219

Query: 244 NIV 246
            ++
Sbjct: 220 KLI 222


>gi|330467719|ref|YP_004405462.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328810690|gb|AEB44862.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 211

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 21/221 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----DWPFDLVRCMA 91
           M+ +D        +  L E        + + D+  E        S      P  ++  + 
Sbjct: 1   MVVVDDQTLVRQGIRGLLE--------VAQVDVVGEAADGRAALSVIAQTMPDVILLDLR 52

Query: 92  LSEKDK-YYNVLQRPTELFCPVF-HTLPENITPPAGM----DNRYCSLTFDVARIRIGLM 145
           +   D  +     +  ++  PV   T  ++     G        Y      + ++   + 
Sbjct: 53  MPRFDGIWTIEQLKAADIDIPVLVLTTFDDDALVLGALRAGARGYLLKDVTLEQLTRAIH 112

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            L   G +I    + +  L A          D    +   LT RE E L  ++ G ++ E
Sbjct: 113 TLADGGTLIAPS-ITDRMLRAIRSGPSPAGPDAPTVQ--SLTEREREVLRLVAHGYSNRE 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L ++  TV N+++ I+ K   + R+ A+  A+   I+
Sbjct: 170 IAGALFLAEGTVKNHVSMILTKLGARDRTNAVLRALHEGIL 210


>gi|311896797|dbj|BAJ29205.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 229

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 5/144 (3%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F              + +         +   +  +     ++          
Sbjct: 83  PRVLILTTFDLDEYAFAALKAGASGFLLKDVPPTELVAAIRSVHGGDAVVAPTTTRR--- 139

Query: 165 LAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           +    A +  +     G      LT RE E    +S+G ++ EIA  L +S  TV  ++ 
Sbjct: 140 MIDRFAEVLPTPASTPGSTVLGPLTDREREVFLLVSQGLSNGEIAARLVLSEATVKTHVG 199

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+ K   + R  A+  A  N +V
Sbjct: 200 RILAKLGLRDRVQAVVLAYENGLV 223


>gi|307328329|ref|ZP_07607506.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886033|gb|EFN17042.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 211

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            L +  + A   A   +      G+    LT RE E L  +++G ++ EIA  L +S  T
Sbjct: 122 ALLDPAVHARLVALARQQPAAGSGELPAGLTAREAEVLICMAKGLSNREIARSLFVSEAT 181

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  ++  +  KT ++ R  AIAYA R  +
Sbjct: 182 VKTHVNRVFAKTGSRDRGQAIAYAHRYGL 210


>gi|297538453|ref|YP_003674222.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257800|gb|ADI29645.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Methylotenera sp. 301]
          Length = 258

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 35/53 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE+E + WI  GKT+ EIA IL IS+NTV +++  + +K     R+ A+A
Sbjct: 199 LSVRELEIIHWIKSGKTNQEIATILDISQNTVKSHLKRVFQKMNVTRRAQAVA 251


>gi|260433332|ref|ZP_05787303.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417160|gb|EEX10419.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 230

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLF-----PKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           G+ +R  ++         G++ +       + + + R  + ++ + A    +      V 
Sbjct: 97  GITDRGLTVPVRGPYGECGMLSVTKDCSDTEWKKLKRHVMGDLQMAAVQAHDTVMQSGVL 156

Query: 180 WGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   L+ RE E L W++EGK+  +I  IL IS  TV  ++ S   K    T + AI
Sbjct: 157 AKALYLPSLSRREREILQWVAEGKSQQDIGDILSISHRTVEVHLRSGREKLGALTTAQAI 216

Query: 238 AYAVRNNI 245
             A+   +
Sbjct: 217 GRAIGLGL 224


>gi|118917992|dbj|BAF40420.1| PsyR [Pseudomonas syringae pv. tabaci]
          Length = 247

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           + +  ++ S++P   ++    S       +++       P F     N       D+   
Sbjct: 52  RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 111

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   + +     R+ E        L  +   + K
Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 171

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H         +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   
Sbjct: 172 TRAPHELFPQPTQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231

Query: 231 KTRSGAIAYAVRNNIV 246
           +T   A+  A+   +V
Sbjct: 232 RTAKQAVYKAINMGMV 247


>gi|256372733|ref|YP_003110557.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009317|gb|ACU54884.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 222

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G D  L+ RE + L  ++ G+T+ EIA  L IS  TV  ++A +  K     R+ A+  
Sbjct: 137 LGSDVVLSDRERQVLELVARGRTNVEIAEALAISEATVKTHLAHVFDKVGATNRTSAVLR 196

Query: 240 AVRNNIV 246
           A+   ++
Sbjct: 197 AMELGLI 203


>gi|257487581|ref|ZP_05641622.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331012605|gb|EGH92661.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 247

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           + +  ++ S++P   ++    S       +++       P F     N       D+   
Sbjct: 52  RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 111

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   + +     R+ E        L  +   + K
Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 171

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H         +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   
Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKV 231

Query: 231 KTRSGAIAYAVRNNIV 246
           +T   A+  A+   +V
Sbjct: 232 RTAKQAVYKAINMGMV 247


>gi|213692561|ref|YP_002323147.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524022|gb|ACJ52769.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458713|dbj|BAJ69334.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 289

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N +
Sbjct: 229 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 288

Query: 246 V 246
           V
Sbjct: 289 V 289


>gi|167463570|ref|ZP_02328659.1| hypothetical protein Plarl_13624 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381266|ref|ZP_08055269.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154842|gb|EFX47113.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 218

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +  L         +  +  +   H     +LT RE E L+ +++G T+ E+A +L IS  
Sbjct: 124 QAYLHHAAAKKVIEGYLQSASHDHTDAFQQLTDREKEILSLVAKGYTNKEVADLLSISAK 183

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV N+ A+IM K    TR   I +AV+  ++
Sbjct: 184 TVENHKANIMDKLNLNTRRDLIRFAVKRGLL 214


>gi|333026039|ref|ZP_08454103.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745891|gb|EGJ76332.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 220

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 4/135 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P     L      +         
Sbjct: 87  VYQALRAGASGFLLKDASARQLAEAVEVVARGEALLAPSVTRRLITEFARVPETVL---- 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +     G   ELT RE E L  ++ G ++ EIA  L ++ +TV  +++ ++ K   +
Sbjct: 143 RGPASPHPGGAYGELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLR 202

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A  N +V
Sbjct: 203 DRTQAAVFAYENRLV 217


>gi|328883286|emb|CCA56525.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 225

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 57/165 (34%), Gaps = 9/165 (5%)

Query: 89  CMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + + + D      +  ++      L    F       +      + +       A +  
Sbjct: 55  DVRMPKLDGVETTRRICSQPDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLG 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGK 201
            +  +     ++         LL  +   +  S      K+   LT RE E +  +++G 
Sbjct: 115 AIRSVHSGDAVVAPSTTRR--LLDRFSPMLPSSGKEPEHKELGRLTDREREVMLLVAQGL 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A  + +V
Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYESGLV 217


>gi|196233056|ref|ZP_03131904.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222863|gb|EDY17385.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 51/163 (31%), Gaps = 15/163 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F L                     +   VF    +           Y S + +V  +   
Sbjct: 58  FRLPGADGAESTAHLRTEFPDARVVVLSVFEGEEDIWRAVEAGAMGYVSKSAEVEEVLEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +                 +A+  A+              LT RE + L  I  G ++
Sbjct: 118 IRCVVGGETYFPAP-------IASKLASRRTRD--------ALTPREHQVLHHIVAGLSN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  +I++ + K     R+ A   AV+  I+
Sbjct: 163 KEIAAALHMSEATVKLHISNTLAKLHVADRTQAAIVAVQRGII 205


>gi|330878281|gb|EGH12430.1| transcriptional regulator PsyR [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 247

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 21/196 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           +K   I+ S++P   ++    S       +++       P F     N       D+   
Sbjct: 52  RKAKPIILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDFLK 111

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   K +     R+ +        L  +   + K
Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIK 171

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H       + +L+ RE + L W++ GK   EIA I  IS  TV  +++++  K   
Sbjct: 172 TRAPHELFPPTVNCKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEV 231

Query: 231 KTRSGAIAYAVRNNIV 246
           +T   A+  A++  +V
Sbjct: 232 RTAKQAVYKAIKMGMV 247


>gi|308177198|ref|YP_003916604.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307744661|emb|CBT75633.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 230

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 8/152 (5%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
                P  +    F      +       + +         +   +  +     +I     
Sbjct: 80  KAADGPKIIVLTTFDMDEYALRAIQAGASGFLLKDAPPEELLESVRTVNRGDAVIAPSTT 139

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVILGISR 214
                L  +   M K       +        LT RE E    I+ G ++ EIA  L +S 
Sbjct: 140 RR---LLDHMTPMLKKNAAQHDEHLIAAVESLTPREREVFGLIAVGLSNPEIAEKLFLSE 196

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  ++  I+ K   + R  A+  A +  +V
Sbjct: 197 ATVKTHVGHILAKLEARDRVQAVVIAYQTGVV 228


>gi|149375695|ref|ZP_01893464.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
 gi|149360097|gb|EDM48552.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
          Length = 301

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 35/71 (49%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL   +              F LTGRE + L WI+ GKT+ EI  IL +S  TVN ++  
Sbjct: 218 LLRLQEVQKPSEATGALRTRFSLTGRESDVLLWIANGKTNREIGQILEMSPRTVNKHLEQ 277

Query: 224 IMRKTATKTRS 234
           + RK   + R+
Sbjct: 278 VFRKLGVENRT 288


>gi|302545230|ref|ZP_07297572.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462848|gb|EFL25941.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P     L      +   A     
Sbjct: 94  VYEALRAGASGFLLKDASAEELAHAVRVVAAGDALLAPNITKRLIAEFSRVTAAA----- 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +  +LT RE E L  I++G ++ EIA  L ++  TV  ++  I+ K   +
Sbjct: 149 ---PRAPLKDRVGDLTERETEVLALIAQGLSNAEIATRLVVAEQTVKTHVGRILLKLGLR 205

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A  + +V
Sbjct: 206 DRTQAAVFAYESGLV 220


>gi|284050135|ref|ZP_06380345.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
 gi|291569796|dbj|BAI92068.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 236

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 14/174 (8%)

Query: 87  VRCMALSEKDK-YYNVLQRP-TELFCPVFHTLPENITPP-AGMDNRYCSLTFDVARIRIG 143
           +  + L++  K Y    + P T++     H   + +    +   + Y      + R+   
Sbjct: 62  IDGIELTQTFKEYLRSQKGPNTKVLILTMHDNKDAVMGAFSAGADSYSVKDVSIDRLMEA 121

Query: 144 LMLLFPKGR----IILRDRLWEIGLL-------AAYQANMFKSYDVHWGKDFELTGREVE 192
           + +          +I R  L +   L       A    N  +     +     LT RE+E
Sbjct: 122 IQVTSEGNSWIDPVIARTVLQQAQNLPGENTNAATVTINAVEPEYKEFLSTCPLTERELE 181

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I  G+++ EIA  L I+  TV  ++ SI+ K     R+ A   A+R+  +
Sbjct: 182 VLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSGWI 235


>gi|19553213|ref|NP_601215.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390849|ref|YP_226251.1| response regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21324779|dbj|BAB99402.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326187|emb|CAF20350.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Corynebacterium glutamicum ATCC
           13032]
          Length = 210

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ +++G+++ EI   L ++  TV +++  +  K    +R+ A+A A +  I
Sbjct: 150 LSAREIEVLSLVAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGI 209

Query: 246 V 246
           +
Sbjct: 210 I 210


>gi|294813229|ref|ZP_06771872.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441661|ref|ZP_08216395.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325828|gb|EFG07471.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 53/165 (32%), Gaps = 9/165 (5%)

Query: 89  CMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + +   D      +   +      L    F       +      + +         +  
Sbjct: 55  DVRMPRLDGVEATRRICAQPDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201
            +  +     ++         LL  +   +         K+ + LT RE E +  +++G 
Sbjct: 115 AIRSVHSGDAVVAPSTTRR--LLDRFSPMLPSGGPEPRNKEVDRLTEREREVMMLVAQGL 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 173 SNGEIAGRLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLV 217


>gi|27376076|ref|NP_767605.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27349215|dbj|BAC46230.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 306

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +    +  +  LT RE E L W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R
Sbjct: 233 ALPPEFTSELGLTTREGEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 291


>gi|21220639|ref|NP_626418.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256788218|ref|ZP_05526649.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289772111|ref|ZP_06531489.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|5578847|emb|CAB51249.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289702310|gb|EFD69739.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 227

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L  EQ+ D +V  D        +A +        L     +    F      +       
Sbjct: 43  LAAEQRAD-VVLMDIRMPGTDGLAATRMISADPSLAHVRVVILTTFEVDDYVVQSLRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----VHWGKD 183
           + +     +   +   + +      ++        GL+A + A    + +        + 
Sbjct: 102 SGFLGKGSEPEELLSAIRVAAGGEALLSPTATK--GLIARFLAQQDTTDEDRDPARAERL 159

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A  +
Sbjct: 160 ESLTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYES 219

Query: 244 NIV 246
            +V
Sbjct: 220 GLV 222


>gi|325000860|ref|ZP_08121972.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 222

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               EL+ REVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A
Sbjct: 156 NTPRELSAREVEVLQLVADGQSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALA 215

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 216 MRAGVI 221


>gi|309813018|ref|ZP_07706746.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308433090|gb|EFP56994.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 258

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           W     A    ++  S     G+  +LT RE E L  +  G ++ EIA  L +   TV  
Sbjct: 168 WPFASSAHSTPSLSPSRTGDGGRLDDLTPREREVLGLLGRGLSNAEIAAALFVGEATVKT 227

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++ K   + R  A+  A    +V
Sbjct: 228 HVSNVLMKLGLRDRVQAVVAAYETGLV 254


>gi|264679733|ref|YP_003279642.1| LuxR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210248|gb|ACY34346.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni CNB-2]
          Length = 274

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           ++AN  +           LT REVE L  I++GK+S E+A  L IS  TV+ +I +I  K
Sbjct: 196 FKANFHEESIFKHKSFESLTEREVEILKLIAQGKSSLEVASYLQISPLTVSTHIKNIYGK 255

Query: 228 TATKTRSGAIAYAVRNNIV 246
              +TR+ A+  A+   I+
Sbjct: 256 MQVRTRAQAVRCAILIGII 274


>gi|222149994|ref|YP_002550951.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736976|gb|ACM37939.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 251

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 79/238 (33%), Gaps = 33/238 (13%)

Query: 29  RSDLLARMIPLD---------------CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R D+  R+I +                  +     +    E   AS  +    D F    
Sbjct: 26  RGDIFPRLIAMQKAINARSFAVFRVAGSGLPRKRMLQCECESWAASGMVGSYSDAFVSCY 85

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-FCPVFHTLPENITPPAGMDNRYCS 132
            D ++S       +  + L       +         F      LP    P       +  
Sbjct: 86  GDLLLSH------IDDLLLPLMWNAKDNATFCISSEFGAFVSRLPAGNLP-------FSG 132

Query: 133 LTFDVARIRIG---LMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTG 188
           + F V    +G   ++        +  D + ++         ++    +        L+ 
Sbjct: 133 VAFPVRLGAVGNGYVIFALNGSEDLDSDVMIDMHNRSCKLMMDILSLSERKVAPSEALSD 192

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+R   +
Sbjct: 193 REIACLQLAGDGRISEEIAENLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 250


>gi|209523263|ref|ZP_03271819.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209496414|gb|EDZ96713.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 220

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 7/157 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           VR   +       ++ ++  E+   V  T  ++      M+     Y         +   
Sbjct: 55  VRMPIMDGVAAMRSLAEQQPEIKVLVLTTFDDDEYVTQAMESGAKGYLLKDTPSDELAQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++ KG   L   L+E  + A  +A+     +       +LT RE+E L  I +G ++
Sbjct: 115 IRAVY-KGYTQLGPGLFEKVMAARSKAS---RDEPLPDNLQDLTPRELEVLRLIGKGYSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            EIA  L IS  TV N+++SI+     + R+     A
Sbjct: 171 REIAQELFISERTVKNHVSSILSSLNLRDRTQVALLA 207


>gi|254393192|ref|ZP_05008347.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
 gi|294811637|ref|ZP_06770280.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440178|ref|ZP_08214912.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706834|gb|EDY52646.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
 gi|294324236|gb|EFG05879.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 223

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P              L+A +   
Sbjct: 93  VYEALRAGASGFLLKDASAAELAHAVRVVAAGDALLAPA---------VTKRLIAEFSRL 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   LT RE E L  I++G ++ EIA  L ++  TV  ++  I+ K   +
Sbjct: 144 TGAPRAPLRERVGTLTERETEVLALIAQGLSNAEIATALVVAEQTVKTHVGRILVKLGLR 203

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A  + +V
Sbjct: 204 DRTQAAVFAYESGLV 218


>gi|284042762|ref|YP_003393102.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946983|gb|ADB49727.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 228

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 15/185 (8%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENI 120
            +       +  V +  P  LV  + +  +     + +   EL             P   
Sbjct: 43  AEAGDVPSAERAVRAHHPHVLVLDLNMPGEQSLPAIPRLVAELPETAVVVLTMQQDPAFA 102

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                   R   L        +  + L  +GR  L   L               +     
Sbjct: 103 REALRSGARGYVLKEAADDELVQAVRLAREGRTYLNPEL----------GARMAAEPPPS 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   +LT RE+E L  I+ G T+ EIA  L +S  TV ++ A I +K    +R+  + YA
Sbjct: 153 GPPDDLTARELEVLRLIALGHTNAEIAQQLFLSIRTVESHRAHIQQKVRRSSRAELVRYA 212

Query: 241 VRNNI 245
           + + +
Sbjct: 213 LDHGL 217


>gi|302531265|ref|ZP_07283607.1| response regulator [Streptomyces sp. AA4]
 gi|302440160|gb|EFL11976.1| response regulator [Streptomyces sp. AA4]
          Length = 218

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D +   L   +  +  G  ++ P     L DR    G     +  
Sbjct: 89  VYAALQGGASGFLLKDTQPDYLVSALRSVADGDAVMSPSVTRRLLDRFVGSG---GSEMR 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                DV       LT RE E L  I++G ++ EIA  L +S  TV  ++  I+ K   +
Sbjct: 146 DPAELDV-------LTDREREVLVLIAKGMSNVEIAETLFLSEATVKTHVGRILSKLDLR 198

Query: 232 TRSGAIAYAVRNNI 245
            R  A+  A    +
Sbjct: 199 DRVQAVVLAYETGL 212


>gi|187251602|ref|YP_001876084.1| two component LuxR family transcriptional regulator [Elusimicrobium
           minutum Pei191]
 gi|186971762|gb|ACC98747.1| Two-component transcriptional regulator, LuxR family
           [Elusimicrobium minutum Pei191]
          Length = 225

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L    F      I       N Y S     + +   +     +G +I +       L+  
Sbjct: 85  LMLSSFEDEAHVIEAIQAGANGYLSKMLPASELLNSIKTFTSEGLMIPQ------QLMGK 138

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
               + K  D        LT  E++ ++ + +G ++ E+A  L  S  T+ N++ S   K
Sbjct: 139 LLHGLRKMGDNGTPSQALLTRTEIKVISLLGKGLSNKELATELSCSVKTIKNHLNSAFHK 198

Query: 228 TATKTRSGAIAYAVRNNIV 246
               +R+ A+  A+   ++
Sbjct: 199 LGVGSRTEAVVKAIEKGLI 217


>gi|161724871|emb|CAO85746.1| rR protein [Pseudomonas putida]
          Length = 240

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 21/196 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-PV 112
            Y     +L+   D   +  L  I     PF     +A S  +      +      C   
Sbjct: 63  SYKDNKSYLI---DPIIKHGLREIT----PFSWHEALANSGPEGVDFFRRATRYRICSGT 115

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQA 170
             TL +           +C+L+   A  ++       K +  L+  L +    L+ + + 
Sbjct: 116 TFTLRD-------ASGTFCALSVCDAGSQVDFDRRMAKQQSQLQMLLIKFHSWLMTSRKT 168

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   S       D  L+ RE+  L  +  GKT  EIA   GIS  TV  ++++I  K   
Sbjct: 169 DQLFSS----AADGPLSTRELGVLQLVMRGKTYREIATDCGISERTVKFHMSNISGKLQV 224

Query: 231 KTRSGAIAYAVRNNIV 246
                A+  A R  I+
Sbjct: 225 GNAKQAVYEAKRQGII 240


>gi|119491420|ref|ZP_01623439.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
 gi|119453415|gb|EAW34578.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
          Length = 209

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L  +++G ++ +IA  L I   TV +++  I+ K     R+ A+  AV+
Sbjct: 144 NPELSERELEVLRSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVK 203

Query: 243 NNIV 246
             IV
Sbjct: 204 RGIV 207


>gi|302552999|ref|ZP_07305341.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
 gi|302470617|gb|EFL33710.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
          Length = 221

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 61/171 (35%), Gaps = 2/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  + +    +   +   L    F              + +     
Sbjct: 50  DVVLMDIRMPEVNGIEATREIAAADGATKVLVLTT--FDLDEYVYQALRAGASGFLLKDA 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              ++  G+ ++     ++       +    +  +   +          +LT RE E L 
Sbjct: 108 SARQLADGVRVVASGEALLAPSVTRRLITEFSKLSETPRLMPSAQAAYGDLTERETEVLV 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 168 LIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 218


>gi|224552993|gb|ACN54748.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWIS 198
           + + ++        I   R   I  LA         Y  H   K+  L+ RE + L W+S
Sbjct: 101 VLLSVISHKDCDINIENYRPKFITFLANLHQKTLNLYSQHHQKKNVFLSPRERQILKWVS 160

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  E+++IL I+  TV  ++ ++M+K        A+   V   ++
Sbjct: 161 AGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGVELQLL 208


>gi|319793774|ref|YP_004155414.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315596237|gb|ADU37303.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 264

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           +  RL    L+        +S          L+ RE E L  ++ G  ++EIA+ L IS 
Sbjct: 173 ITPRLARRLLVHLDHQRSNQSPVRPPETKAALSAREREVLRLVATGYVTEEIALQLTISA 232

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TVN ++ +I RK    TR+ A+++A    ++
Sbjct: 233 QTVNAHVKNIYRKLHAHTRAQAVSFASHRGLL 264


>gi|116073957|ref|ZP_01471219.1| Bacterial regulatory protein, LuxR family [Synechococcus sp.
           RS9916]
 gi|116069262|gb|EAU75014.1| Bacterial regulatory protein, LuxR family [Synechococcus sp.
           RS9916]
          Length = 92

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S          L+GRE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R 
Sbjct: 3   SGGTPGSMSVSLSGRELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRV 62

Query: 235 GAIAYAVRNNIV 246
             + +A+ +  +
Sbjct: 63  ALLNWAMDHGKI 74


>gi|88809905|ref|ZP_01125411.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH
           7805]
 gi|88786289|gb|EAR17450.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH
           7805]
          Length = 97

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S +     +  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 6   MTSGEGTGSMNASLSARELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKN 65

Query: 233 RSGAIAYAVRNNIV 246
           R   + +A+ +  +
Sbjct: 66  RVALLNWAMDHGKI 79


>gi|206577056|ref|YP_002240258.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342]
 gi|206566114|gb|ACI07890.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342]
          Length = 921

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 59  SHFLLVRWDLFQEQKLDSI----VSSDWPFDLVRCMALSEKDKYYNVLQRPT--ELFCPV 112
           +  LL      QE + D +    + + W   L      +     +  + +    +    +
Sbjct: 746 ACILLADMVSDQENRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLAEHQHLKGL 805

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F    + + P     N   S      +   G+   +   R+      +  G         
Sbjct: 806 FLEAGDTLQPLLAGMNESSS----ACKEEGGVHEPWADKRVPADGTPFNSG--------- 852

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D+H     EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +
Sbjct: 853 --SPDIHG----ELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNS 906

Query: 233 RSGAIAYAVRNNIV 246
           R+ A++ A+   ++
Sbjct: 907 RTQAMSRALEMKLL 920


>gi|148271583|ref|YP_001221144.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829513|emb|CAN00426.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 245

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 2/134 (1%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +          SL   V  I  G  LL P     + +R       AA  A +
Sbjct: 109 FTALDAGASGFVLKSASPESLVEAVHVIARGDALLSPDVTRRVIERFGRGPADAASTAPI 168

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                    +   LT RE+E L  ++EG  + EIA  L +   TV  +++ ++ K   + 
Sbjct: 169 --PTIPTDPRVATLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRD 226

Query: 233 RSGAIAYAVRNNIV 246
           R  A+ +A    IV
Sbjct: 227 RVQAVVFAYERGIV 240


>gi|226305431|ref|YP_002765389.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184546|dbj|BAH32650.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 219

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 5/171 (2%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVL---QRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           ++S  P  ++  + + +      +      P  L   V     + I    G    Y + T
Sbjct: 50  INSTKPHVVLLDVHMPDGGGVAVLRGIDSGPVCLALSVSDAAEDVIAVIRGGARGYVTKT 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              + +  G+  +      +   RL    +L ++             +   LT RE+E L
Sbjct: 110 ISGSELAEGVRRVAGGD-AVFGPRLAGF-VLDSFTGRSNAPEPQLDPELDSLTPRELEVL 167

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 168 RLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHRRQI 218


>gi|117620400|ref|YP_858390.1| csgAB operon transcriptional regulatory protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561807|gb|ABK38755.1| probable csgAB operon transcriptional regulatory protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 219

 Score = 93.1 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + R+ +G+  +      I R       LL        K  + H      LT RE E + 
Sbjct: 117 PLDRLVLGIRKVLEGEYWIPR------HLLCDLVNYYRKGGEHHLRNQTLLTVREQEIIR 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++  G ++ EIA  L +S +T+ +++ ++ +K   K R  A+++A
Sbjct: 171 YLMTGASNTEIADSLFVSEHTIKSHLYNVFKKLNVKNRLQAVSWA 215


>gi|302520212|ref|ZP_07272554.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|318062155|ref|ZP_07980876.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|302429107|gb|EFL00923.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 224

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 4/135 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P     L      +         
Sbjct: 91  VYQALRAGASGFLLKDASARQLAEAVEVVARGEALLAPSVTRRLITEFARVPETVL---- 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +     G   ELT RE E L  ++ G ++ EIA  L ++ +TV  +++ ++ K   +
Sbjct: 147 RGPASPHPGGAYGELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLR 206

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A  N +V
Sbjct: 207 DRTQAAVFAYENRLV 221


>gi|296120645|ref|YP_003628423.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296012985|gb|ADG66224.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 220

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 70/182 (38%), Gaps = 10/182 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYY--NVLQRPTELFCPVFHTLPENITPPAGM-- 126
           E+ L ++     P  ++  + L   +       L+  +     +  T+ ++     G   
Sbjct: 43  EEALTALEVQSAPELILLDIGLPGMNGISAMKPLRAASPALKIIILTVFDDHNRIFGAIC 102

Query: 127 --DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   T     I   +  +   G  +      +I        +             
Sbjct: 103 AGADGYLLKTSSAEEIARAIEEVLSGGASMTP----QIARKVLELMSNTPPKATVPKSPS 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + L  +  G T DEIA  L +S +T++ ++ +I +K     R+GA+A A+R+ 
Sbjct: 159 DLSLREQDVLKQVVRGLTKDEIARALKLSPHTIDTHLRNIYQKLHVHNRAGAVAIAIRDG 218

Query: 245 IV 246
           +V
Sbjct: 219 LV 220


>gi|307133126|ref|YP_003885142.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya
           dadantii 3937]
 gi|313104103|sp|Q47188|EXPR_DICD3 RecName: Full=Transcriptional activator protein expR
 gi|306530655|gb|ADN00586.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya
           dadantii 3937]
          Length = 250

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 30/231 (12%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
            +    +    +  G   +      + +++  D ++ S++P + V     +       V+
Sbjct: 13  STIQSYLNRKLKSYGDPKY--AYLIMNKKKPTDVVIISNYPTEWVDIYRNNNYQHIDPVI 70

Query: 103 QRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLL-- 147
                   P F    +             N++    + N Y  +  D       L  +  
Sbjct: 71  LTAINKISP-FSWDDDLVISSKLKFSRIFNLSKDYDIVNGYTFVLHDPGNNLAALSFMIE 129

Query: 148 ---FPKGRIILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLT 195
                +   I+++   ++ +L         + Y+       +    +    + RE E L 
Sbjct: 130 EHRSEELEEIIQNNKDKLQMLLISAHEKLTSLYREMSRNRNNSKSQEADLFSQRENEILH 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W S GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N++
Sbjct: 190 WASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|288916721|ref|ZP_06411095.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288351795|gb|EFC85998.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 237

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +R+G  LL P     L +R             
Sbjct: 103 VYAALAAGASGFLLKDVSPEQLVGAVRLVRLGDALLAPAITRRLVERFART--------- 153

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   LT REVE L  ++ G ++ E+A  L +S  TV  ++A IM K   +
Sbjct: 154 --DRGTTLHRELSTLTPREVEVLQLLATGLSNAELAARLVLSEATVKTHVARIMAKLGLR 211

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    +V
Sbjct: 212 DRAQAVVVAYETGLV 226


>gi|224552996|gb|ACN54750.1| PagR [Pantoea sp. C9-1]
          Length = 210

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 162 IGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +  L          Y  H   K+  L+ RE + L W+S+GKT  EIA+IL I+  TV  +
Sbjct: 123 MSFLIHLHQKTLNLYSQHQQKKNAFLSPRERQILKWVSDGKTYAEIAIILSIAERTVKFH 182

Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244
           + ++M+K           +A++  
Sbjct: 183 MGNVMKKLGVNN----ARHAIKLG 202


>gi|17229630|ref|NP_486178.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17131229|dbj|BAB73837.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 209

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L  +++G ++ +IA  L I   TV +++  I+ K     R+ A+  AV+
Sbjct: 144 NPELSERELEVLRSLAQGMSNADIADALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVK 203

Query: 243 NNIV 246
             IV
Sbjct: 204 RGIV 207


>gi|325282407|ref|YP_004254948.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324314216|gb|ADY25331.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 222

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 12/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D    +L   + R+  G  LL P    + ++ L +          
Sbjct: 97  VFEAVKAGARGYVLKDADSSALLDAIRRVAAGEALLNPD---MAQNVLDDF--------- 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K  ++   K  +L  RE   L  +++G ++ +IA+ L IS  TV N ++ I  K    
Sbjct: 145 RDKREELPQEKHNDLNERETMILKLLAQGFSNQDIALRLDISEKTVRNRLSEIFTKLQLN 204

Query: 232 TRSGAIAYAVRNNI 245
            R+ A  YA+R  I
Sbjct: 205 NRTQAALYAIREGI 218


>gi|229493356|ref|ZP_04387145.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229319672|gb|EEN85504.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 220

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  +         + P  +       + + +     +      L  
Sbjct: 50  DVVLMDVRMPEMNGLDAAR-QILSAGWEPPVRVLMLTTFDIDDYVYEALSVGASGFMLKD 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A   I  + +  +G+ +L   +     L A   +   +          LT RE E L 
Sbjct: 109 APAEELIRAVRVVAEGQALLAPTVTR--RLIADVTSRRAAPRARPAALDALTPREREVLE 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L ++  TV  ++  ++ K   + R+ A+  A  + +V
Sbjct: 167 LIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 217


>gi|254382255|ref|ZP_04997616.1| two component system DNA binding response regulator [Streptomyces
           sp. Mg1]
 gi|194341161|gb|EDX22127.1| two component system DNA binding response regulator [Streptomyces
           sp. Mg1]
          Length = 210

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 10/163 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +        +  RP      V  T   +    A ++                
Sbjct: 55  MDLQFGSGMHGSAATRLITARPGAPRVLVLTTYDTDADILAAVEAGASG----------Y 104

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   +    R    G  A   A   +  D        LT RE+E L  +++G ++
Sbjct: 105 LLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADGLSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I+  L +S+ TV +++  I  K    +R+ A+A A    ++
Sbjct: 165 QQISKELFLSQATVKSHLVHIYAKLGVDSRTSAVATAATRRLI 207


>gi|21242903|ref|NP_642485.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108399|gb|AAM37021.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 213

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L  ++ G ++ +I   L IS  TV  ++ +I+ K   + R+ A+  A+R
Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALR 205

Query: 243 NNIV 246
             I+
Sbjct: 206 RGIL 209


>gi|291003373|ref|ZP_06561346.1| two component transcriptional regulator, LuxR family protein
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 221

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               EL+GREVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A
Sbjct: 155 NTPRELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALA 214

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 215 MRAGVI 220


>gi|224552969|gb|ACN54732.1| PagR [Pantoea agglomerans]
 gi|224552972|gb|ACN54734.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M+K      + A+    
Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203

Query: 242 RNNIV 246
              ++
Sbjct: 204 ELRLL 208


>gi|302867410|ref|YP_003836047.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506180|ref|YP_004085067.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570269|gb|ADL46471.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412799|gb|ADU10916.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 227

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 74/223 (33%), Gaps = 11/223 (4%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P R  L      L       +      + VG +   +   +L + + L  +V  D     
Sbjct: 9   PVRILLADDQPLLRTGFRMVLGAEDDLDVVGEAGDGVEAVELSR-RLLPDVVLMD----- 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIG 143
           +R   L        ++     +   V  T  ++             + +       +   
Sbjct: 63  IRMPRLDGVAATRAIVSARLPVRVLVLTTFEQDEHVVGSLRAGAGGFLTKDVPAEDLVAA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G ++    L    LL  +   +             LT RE E LT ++ G ++
Sbjct: 123 IRTVAAGGAVMSPRILRR--LLDRFAQVLPDPAAAPARALEPLTDREREVLTHMARGLSN 180

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA +L +S  TV  ++  ++ K   + R  A+  A    +V
Sbjct: 181 AEIARLLSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYETGLV 223


>gi|300784547|ref|YP_003764838.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794061|gb|ADJ44436.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 186

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               EL+ REVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A
Sbjct: 120 NTPRELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALA 179

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 180 MRAGVI 185


>gi|17229196|ref|NP_485744.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17135524|dbj|BAB78070.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 239

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           AN     ++     + LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K  
Sbjct: 162 ANSETEDNLETIDSYTLTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLC 221

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A   A+R+ +V
Sbjct: 222 ADDRTQAAVRALRSGLV 238


>gi|186682719|ref|YP_001865915.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465171|gb|ACC80972.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 211

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 18/163 (11%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143
           +R   +   D    +  +       V  T   +     G+      Y     +   +   
Sbjct: 62  LRMPKMEGADAIAAICAKFKHARIVVLTTFDGDEDIYRGLRAGAKGYLLKGAEPNELLDA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + I          +AA  A    S         EL+ RE+E L  I++GK +
Sbjct: 122 IRTVHKGQKYIPPT-------IAAKLAERMSSE--------ELSDRELEVLRLIAKGKNN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I+ +L I+ +TV  +  +I  K     R+ A+  A+   IV
Sbjct: 167 QQISNVLNIAESTVRFHTNNIFGKLNVSDRTQALVTALNRGIV 209


>gi|305680025|ref|ZP_07402835.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305660645|gb|EFM50142.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 232

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++    +     D     L   V  +     ++ P     L  RL            
Sbjct: 96  VVQSIEAGASGFLLKDTSPEELISAVQSVGESSAVISPAATATLFKRLR-----THMAPT 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +     ++ G    LT RE E L  I+ G ++ EIA  L IS  TV  ++  ++ KT ++
Sbjct: 151 VDPMVALNRGLVEPLTHREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSR 210

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+ YA    ++
Sbjct: 211 DRVHAVLYAFDRGVI 225


>gi|322437503|ref|YP_004219593.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165396|gb|ADW71099.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 207

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 40/63 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I++G+++ EIA  LGI+  TV  +++S++ K   + R+ A  YA++ 
Sbjct: 142 VDLTPRESEVLVCITQGRSNQEIADELGIAEKTVRIHVSSLLDKMGARDRTQATIYALQR 201

Query: 244 NIV 246
            +V
Sbjct: 202 GLV 204


>gi|312111451|ref|YP_003989767.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311216552|gb|ADP75156.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 211

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 70/178 (39%), Gaps = 9/178 (5%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              EQ +  +V  D    ++  +  + K     + +R  ++   +  T  ++      + 
Sbjct: 41  HEMEQHIIDLVIMDIRMPVMNGLEATRK-----IKERWPDVKILILTTFNDDEYAVQALK 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +         A  +  +  ++      ++  +     +AA               D  L+
Sbjct: 96  DGANGFLLKTAEQQKLIQAIYSC----MKGGMTIHEDVAAKMVPKLLQKSKQVRVDIPLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+     + EGKT+ EIA  L +S  TV N+I  I++K   + R+    YA++++I
Sbjct: 152 PRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKHDI 209


>gi|56479027|ref|YP_160616.1| nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1]
 gi|56315070|emb|CAI09715.1| Nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1]
          Length = 226

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 1/140 (0%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   V     + I         Y     +   +   +        +I    + ++     
Sbjct: 82  LMLTVSEDAEDLIETLRAGACGYLLKNIEADALIAAINRAAEGESVISPQMMGKLLKGVR 141

Query: 168 YQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +  +  +       +  +L+ RE E L +++ G+++ EIA  L ++ +TV  ++ +++R
Sbjct: 142 GELPVKTAAQTAVASELNKLSPREREILAFLARGQSNKEIARKLELAESTVKIHVQNVLR 201

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    +R  A  +AV   IV
Sbjct: 202 KLNLTSRVQAAVFAVEQGIV 221


>gi|284034127|ref|YP_003384058.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283813420|gb|ADB35259.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 971

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG+T+ ++A  L IS  TV+ ++++I+ K   ++R+ A A A R+ +
Sbjct: 910 LTARETEVLALLAEGRTNRQLARELYISEKTVSVHVSNILAKLGVRSRTEAAAVARRDGL 969

Query: 246 V 246
           +
Sbjct: 970 L 970


>gi|192359370|ref|YP_001983632.1| response regulator [Cellvibrio japonicus Ueda107]
 gi|190685535|gb|ACE83213.1| response regulator [Cellvibrio japonicus Ueda107]
          Length = 225

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +          D     L   +  +R G   +      IL  R+            
Sbjct: 104 VLGAIEAGAVGYLLKDADSLELVEAIQELRAGRSPISSSIARILVRRM------------ 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        ELT RE E L  I++G T  E+A  LGISR+TV  +I +I RK A  
Sbjct: 152 ---GGSTPATPTPELTPRETEILRGIAKGFTYTELAEWLGISRHTVPVHIKNIYRKLAAN 208

Query: 232 TRSGAIAYAVRNNIV 246
            RS A+  A +  ++
Sbjct: 209 NRSEAVYEASKRGLI 223


>gi|134098288|ref|YP_001103949.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004292|ref|ZP_06562265.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910911|emb|CAM01024.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P    + R  +      AA    
Sbjct: 95  VYEALRAGASGFLLKDALPADLIAGVRVVAGGQALLAPT---VTRRLIEHFSRTAAPPIT 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                DV       LT RE E L  ++ G ++ EIA  L I+  TV ++++ I+ K   +
Sbjct: 152 NPPRLDV-------LTDREREVLVHVARGLSNTEIADALFIAEQTVKSHVSRILGKLGVR 204

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 205 DRVQAVVVAYETGLV 219


>gi|320010051|gb|ADW04901.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 224

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 6/164 (3%)

Query: 87  VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   L   +    +  R   P  L    F       +      + +         +   
Sbjct: 56  VRMPRLDGVEATRRIRARTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLSA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++         LL  +   +         K  E LTGRE E +  +++G +
Sbjct: 116 IRSVHSGDAVVAPSTTRR--LLDRFSPMLPSGRKEPQDKHVEKLTGREREVMMLVAQGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|28558836|ref|NP_788096.1| putative transcriptional regulator [Ruegeria sp. PR1b]
 gi|22726387|gb|AAN05182.1| RC109 [Ruegeria sp. PR1b]
          Length = 258

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S +    ++  LT RE + L W + GKTS E A+IL +S  T+  YI   + K    T++
Sbjct: 182 SANTGGKEEPRLTVREKQVLQWAAFGKTSWETAMILELSERTIETYIGKAVAKLEASTKA 241

Query: 235 GAIAYAVRNNIV 246
            A+  A+   ++
Sbjct: 242 HAVCKALSLGLI 253


>gi|295402188|ref|ZP_06812146.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975779|gb|EFG51399.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 211

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 9/178 (5%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              EQ +  +V  D    ++  +  + K K     +R  ++   +  T  ++      + 
Sbjct: 41  HEMEQHIIDLVIMDIRMPVMNGLEATRKMK-----ERWPDVKILILTTFNDDEYAVQALK 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +         A  +  +  ++      ++  +     +AA               D  L+
Sbjct: 96  DGANGFLLKTAEQQKLIQAIYSC----MKGGMTIHEDVAAKMVPKLLQKSKQVRVDIPLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+     + EGKT+ EIA  L +S  TV N+I  I++K   + R+    YA++++I
Sbjct: 152 PRELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKHDI 209


>gi|238061024|ref|ZP_04605733.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237882835|gb|EEP71663.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 268

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               A    +          LT RE++ L  ++EGK++ EI   L +S +TV  +   + 
Sbjct: 187 TTAAAGQRPAPARGGRSAIGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLF 246

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK   + R+ A+A   R  +V
Sbjct: 247 RKLGARDRAHAVAAGFRAGLV 267


>gi|271962480|ref|YP_003336676.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505655|gb|ACZ83933.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 207

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 20/202 (9%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP----FDLVRCMALSEKDKYYNVLQRPTE 107
           L   +G  H + V  +    +     ++S  P     DL     +   +    V + P+ 
Sbjct: 16  LVALLGGEHDMEVVGEAADGEDALRGIASHEPDVVLMDLQLGDGIDGVEATRRVRELPSP 75

Query: 108 LFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
               V  T   +      +D     Y         +  G+        ++          
Sbjct: 76  PQVLVLTTYETDADIVRAIDAGATGYLLKACPPEELFQGIRAAARGETVLSP-------R 128

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A       +           L+ REVE L  ++ G  + EIA  L I+  TV  ++  I
Sbjct: 129 VATRMMRRMRDPGPA------LSAREVEILELLASGAGNREIARRLFITEATVKTHLVHI 182

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K    TR+ A+  AV   ++
Sbjct: 183 YGKLGVDTRTAAVTAAVERRLI 204


>gi|33239629|ref|NP_874571.1| transcriptional regulator [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237154|gb|AAP99223.1| Transcriptional regulator, contains HTH motif [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 93

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D        L+ RE+E +  ++ G T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MFSGDFSNSVQMSLSAREMEIIELVASGLTNQEIAQKLTISKRTVDNHVSNMFTKTGSKN 60

Query: 233 RSGAIAYAVRNNIV 246
           R   + +A+ +  +
Sbjct: 61  RVALLNWAMDHGKI 74


>gi|15613763|ref|NP_242066.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173816|dbj|BAB04919.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 209

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 38/75 (50%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M +          ELT RE+E L  I EGK++  IA  L I   TV  ++++I+ K   +
Sbjct: 134 MERMRSRKKELHEELTPRELEVLRLIGEGKSNQGIADELYIGIKTVKTHVSNILHKLQLE 193

Query: 232 TRSGAIAYAVRNNIV 246
            R+    YA R+ +V
Sbjct: 194 DRTQIAVYAHRHRLV 208


>gi|225020339|ref|ZP_03709531.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946728|gb|EEG27937.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 233

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++    +     D     L   V  +     ++ P     L  RL            
Sbjct: 97  VVQSIEAGASGFLLKDTSPEELISAVQSVGESSAVISPAATATLFKRLR-----THMAPT 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +     ++ G    LT RE E L  I+ G ++ EIA  L IS  TV  ++  ++ KT ++
Sbjct: 152 VDPMVALNRGLVEPLTHREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSR 211

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+ YA    ++
Sbjct: 212 DRVHAVLYAFDRGVI 226


>gi|241518604|ref|YP_002979232.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863017|gb|ACS60681.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 864

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            +G   +    R I+R RL  +                       LT RE++ L W+  G
Sbjct: 766 GMGASAVAQHVRAIIRGRLGRVAA--------RGPRASTKANPAGLTTREMDVLRWVDLG 817

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K++ EIA +L +S  TV+++++SI+ K   KTR+ A ++A    ++
Sbjct: 818 KSNGEIAALLFVSAKTVDHHVSSILAKLNAKTRTAAASHARSRGLL 863


>gi|119960873|ref|YP_948224.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119947732|gb|ABM06643.1| putative two-component system response regulator [Arthrobacter
           aurescens TC1]
          Length = 237

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 1/135 (0%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQAN 171
           F      +       + +         +   +  +F    +I       +   +A     
Sbjct: 99  FDLDEYALAAIQAGASGFLLKDAPPEELLEAIRTVFRGDAVIAPSTTRRLLDHVAPLLRT 158

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                  H      LT RE E    I++G+++ EIA  L +S  TV  ++  I+ K   +
Sbjct: 159 QTPEQTEHAAAVERLTAREREVFQLIAQGQSNPEIAAGLFLSEATVKTHVGHILAKLGAR 218

Query: 232 TRSGAIAYAVRNNIV 246
            R   +  A    +V
Sbjct: 219 DRVQVVVIAYETGVV 233


>gi|86157284|ref|YP_464069.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773795|gb|ABC80632.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 211

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++EG  +  IA  LGIS +T   ++ +I+ K    +R+ AI  A R  
Sbjct: 148 PLTPREREVLALVAEGLGNKGIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLG 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|242279313|ref|YP_002991442.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242122207|gb|ACS79903.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           salexigens DSM 2638]
          Length = 217

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 12/133 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +          D+    L   + R+  G   L P    I R  L E+          
Sbjct: 94  FPAIKAGAMGYLLKDSTPDELLEAIRRVHRGEPSLAPD---IARKVLSELSQ-------- 142

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D        LT RE++ L  +++GK++  IA  + +S  TV  ++ SI+ K     
Sbjct: 143 -PGEDSETPTPDPLTPRELDTLKLVAKGKSNKAIAEEMFVSEATVRTHMTSILSKLHLAN 201

Query: 233 RSGAIAYAVRNNI 245
           R  A  YA+R  I
Sbjct: 202 RVEATLYALREGI 214


>gi|254422719|ref|ZP_05036437.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190208|gb|EDX85172.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 235

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  I  G ++ +IA  L ++  TV  ++ +I+ K     R+ A   A+R 
Sbjct: 172 YPLTERELEILECIVSGCSNAQIAEKLFVTVGTVKTHVRNILNKLGASDRTQAAVRALRA 231

Query: 244 NIV 246
            ++
Sbjct: 232 GLI 234


>gi|94970774|ref|YP_592822.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552824|gb|ABF42748.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 211

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE+E L  I +G  + +IA  L IS  TVN +I +I+ K     R+ A+  AVR
Sbjct: 146 EESLTSRELEVLHLIRDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVR 205

Query: 243 NNIV 246
             ++
Sbjct: 206 RGLL 209


>gi|325000399|ref|ZP_08121511.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 219

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRY 130
           +V+   P  ++  + +   D      ++++RP      V  T   +      +      +
Sbjct: 43  LVARLRPDVVLMDIRMPGVDGITATRDLVRRPDPPRVLVLTTFGHDRYVYDALRAGATGF 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    I   +  +     ++    L  +          F        +D  LT RE
Sbjct: 103 LLKRTPPRDIVRAVHTVAAGESLLFPAALRGLAA-------GFAPDGGDHLQDAGLTARE 155

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++ G ++ EIA  L +   TV  ++A ++ KT ++ R+ A+  A  +  V
Sbjct: 156 GEVLALMARGLSNAEIARELYLGVETVKTHVAGVLAKTGSRDRTQAVVAAYESGFV 211


>gi|78047743|ref|YP_363918.1| two-component system LuxR family regulatory protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78036173|emb|CAJ23864.1| two-component system regulatory protein, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 213

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L  ++ G ++ +I   L IS  TV  ++ +I+ K   + R+ A+  A+R
Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALR 205

Query: 243 NNIV 246
             I+
Sbjct: 206 RGIL 209


>gi|325264809|ref|ZP_08131538.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
 gi|324030101|gb|EGB91387.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
          Length = 198

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K  D+   K    T RE E   W+ +GK++ +IA IL +S +TV  ++++I      ++R
Sbjct: 117 KESDMKILKGHGFTEREAEVTYWLCQGKSNGDIAYILNLSVSTVKKHLSNIFDNMGVRSR 176

Query: 234 SGAIAYAVR 242
           S A+A A+ 
Sbjct: 177 SAAVALALE 185


>gi|218659948|ref|ZP_03515878.1| autoinducer transcriptional regulator protein [Rhizobium etli
           IE4771]
          Length = 246

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 24/191 (12%)

Query: 63  LVRWDLFQEQKLDSIV----SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP- 117
           + R+ L     +D I+    S   PFD  R + ++E  +          +     H +  
Sbjct: 65  VSRYLLNDYINVDPIIREGFSRQLPFDW-REIDITETAQ--------EFMVDAELHGIGS 115

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             ++ P    +R   L+ +  +      L+    R  L + L E+G L     +    ++
Sbjct: 116 NGVSVPIVDKSRRSLLSINSQKSDDEWTLI---ERQFLPEWL-ELGFL----LHRKAVFE 167

Query: 178 VHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +H   D    L  RE+ECL W S GK S +I  ILG+S +T   Y+ +   K    T S 
Sbjct: 168 LHGENDPVPALGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKAARYKLGCPTLSA 227

Query: 236 AIAYAVRNNIV 246
           AIA+AV  N++
Sbjct: 228 AIAHAVHLNLI 238


>gi|331019185|gb|EGH99241.1| transcriptional regulator PsyR [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 247

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 21/196 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           +K   I+ S++P   ++    S       +++       P F     N       D+   
Sbjct: 52  RKAKPIILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDFLK 111

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   K +     R+ +        L  +   + K
Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIK 171

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H       + +L+ RE + L W++ GK   EIA I  IS  TV  +++++  K   
Sbjct: 172 TRAPHELFPPTANRKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEV 231

Query: 231 KTRSGAIAYAVRNNIV 246
           +T   A+  A++  +V
Sbjct: 232 RTAKQAVYKAIKMGMV 247


>gi|317968117|ref|ZP_07969507.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CB0205]
          Length = 89

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ RE+E +  +++G T+ EI   L IS+ TV+N+++++  KT  K R   + +A+ 
Sbjct: 11  PMDLSERELEIIQLVAQGLTNQEIGENLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMD 70

Query: 243 NNIV 246
           +  +
Sbjct: 71  HGKI 74


>gi|311895574|dbj|BAJ27982.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 220

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 10/182 (5%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            R    Q   LD  + S    ++ R +  ++      VL    E    V   +    T  
Sbjct: 41  ARASTPQVVVLDLNLPSLSGAEVCRQVVAADPAVRVLVLSASGE-HADVLEAVKSGATGY 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                    L   V R  +G  +  P    ++   L E   LA       +         
Sbjct: 100 LVKSAGREELLDAVRRTAVGDPVFTPGLAGLV---LGEFRRLAT------EPGTSAEPAA 150

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  +++G +  +IA  L +S  TV N++ + + K     R   + YA+  
Sbjct: 151 PQLTPRETEVLRLVAKGLSYRQIADRLVLSHRTVQNHVQNTLGKLQLHNRVELVRYAIEQ 210

Query: 244 NI 245
            +
Sbjct: 211 GL 212


>gi|144899411|emb|CAM76275.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 189

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W ++GKT+ E + ILGIS  TV  ++ +  RK    T++  I  A R  +
Sbjct: 127 LTAREREVLLWAAQGKTAWETSAILGISSKTVEFHLGNCGRKLGAATKAQTILAAARRGL 186

Query: 246 V 246
           +
Sbjct: 187 L 187


>gi|302519720|ref|ZP_07272062.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. SPB78]
 gi|302428615|gb|EFL00431.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. SPB78]
          Length = 140

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A +   + ++     ++          L A  A    +      +   L
Sbjct: 19  ASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRR---LIADFARQRPAPGKPALRLKAL 75

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E LT ++ G+++ EIA  L ++  TV  +++ ++ K   + R+ A+ +A  + +V
Sbjct: 76  TERETEVLTLVARGRSNTEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 135


>gi|329939332|ref|ZP_08288668.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329301561|gb|EGG45455.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 230

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 63/175 (36%), Gaps = 6/175 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYC 131
           V    P  ++  + + E +      +      R   L    F              + + 
Sbjct: 53  VRELKPDVVLMDIRMPELNGIEATREIVAADGRTKVLVLTTFDLDEYVYQALRAGASGFL 112

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                  ++  G+ ++     ++       +    +  A   +      G   ELT RE 
Sbjct: 113 LKDASARQLAEGVRVVASGEALLAPSVTRRLITEFSRLAEAPRLPAAAPGAYGELTERET 172

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I++G ++ EIA  L ++ +T+  +++ ++ K   + R+ A  +A    +V
Sbjct: 173 EVLILIAQGLSNAEIAGRLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLV 227


>gi|311899662|dbj|BAJ32070.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 228

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 6/164 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIG 143
           VR   L        +  R       V  T   +             +        ++  G
Sbjct: 56  VRMPVLDGVAATAELSVRCPGSRVLVLSTFESDAYVFAAVRAGAAGFLLKRTPPEQLLDG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +  LA +                + LT RE + L  +  G++
Sbjct: 116 IRTVASGEALLSPSVTRRV--LAEFARAAPPPPSPAVRAVLDRLTPREHQVLRLLGRGRS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +   TV  ++  ++ K   + R  A+ +A  + +V
Sbjct: 174 NPEIAAALYLGEATVKTHVRRVLDKLGVRNRVHAVVFAFDHGLV 217


>gi|269957384|ref|YP_003327173.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306065|gb|ACZ31615.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 234

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 5/165 (3%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           + R   L+      +    P  +    F      +       + +         +   + 
Sbjct: 67  MPRMDGLTATAALTSGADAPRVVVLTTFDIDEYVLEAIRSGASGFMLKDAPPEEMLGAIR 126

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGK 201
            +     +I       + L     A    + D            LT RE E L  ++ G+
Sbjct: 127 TVHAGDAVIAPSSTRRL-LEHLVTALPTPAPDTPPSPAHAALATLTDREREVLELMARGR 185

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L ++  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 186 SNTEIAADLFVAEATVKTHVGRILAKLDARDRVQAVVLAYETGVV 230


>gi|229489617|ref|ZP_04383480.1| response regulator [Rhodococcus erythropolis SK121]
 gi|229323714|gb|EEN89472.1| response regulator [Rhodococcus erythropolis SK121]
          Length = 219

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 5/171 (2%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVL---QRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           ++S  P  ++  + + +      +      P  L   V     + I    G    Y + T
Sbjct: 50  INSTKPHVVLLDVHMPDGGGVAVLRGIDSGPVCLALSVSDAAEDVIAVIRGGARGYVTKT 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              + +  G+  +      +   RL    +L ++             +   LT RE+E L
Sbjct: 110 ISGSELAEGVRRVAGGD-AVFGPRLAGF-VLDSFTGRSNAPEPQLDPELDSLTPRELEVL 167

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 168 RLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHRRQI 218


>gi|297559326|ref|YP_003678300.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843774|gb|ADH65794.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 210

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 38/96 (39%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              +      E  L       +F            L+ REVE L   SEG+T+  I   L
Sbjct: 112 AEAVRAAARGETVLTGRLAGRLFTGMRRRGEPAAVLSPREVEVLRLASEGRTNAAIGRAL 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  ++  +  K     R+ A++ A+R  ++
Sbjct: 172 HISPTTVKTHLMRVYDKLGVGDRTSAVSQAIRRGLL 207


>gi|239983739|ref|ZP_04706263.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291455547|ref|ZP_06594937.1| two component transcriptional regulator [Streptomyces albus J1074]
 gi|291358496|gb|EFE85398.1| two component transcriptional regulator [Streptomyces albus J1074]
          Length = 225

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 78/219 (35%), Gaps = 7/219 (3%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           PTR  +      +       +        VG +   L   DL +  + D +V +D     
Sbjct: 7   PTRILIADDQEDVRSGFRLILGSQPDMSVVGEAADGLTAVDLARALRPD-LVLADIRMPG 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V  + L+ +     V   P  +   V  T   +      + +  C   F + R   G++ 
Sbjct: 66  VDGLELTRRLAGPGV---PDPIRVLVVTTFDHDSYVRTALHDGACG--FLLKRSGPGVL- 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +      +  D L    L       +  S      +   LT RE E    +++G T+ EI
Sbjct: 120 IEGVRAAMAGDILISPQLTVRLLQTLTPSAPAPPTRLTPLTARETEIARLVAQGHTNAEI 179

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L IS  T   +IA+I  K   + R G  A+   N +
Sbjct: 180 GMTLSISPGTAKTHIANIQTKLKARNRVGIAAWTWENGL 218


>gi|311899603|dbj|BAJ32011.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 238

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 2/134 (1%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L                L   V  +  G  +L P     L  RL  +         
Sbjct: 93  VWGALRAGAAGFLLKRASPERLIDAVHAVAAGEAVLDPAVTRDLLGRL--LAAPEPPPGP 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    G    LT RE E L   +EG  ++EIA +L ++ +TV  ++  I+ K   +
Sbjct: 151 SAPPPGSVPGPLAALTVREREVLRLAAEGHPNEEIAALLHLAESTVKTHVKRILGKLGAR 210

Query: 232 TRSGAIAYAVRNNI 245
            RS A+A A R+ +
Sbjct: 211 DRSQAVAAAYRHGL 224


>gi|21224169|ref|NP_629948.1| two-component response regulator [Streptomyces coelicolor A3(2)]
 gi|3036890|emb|CAA18523.1| putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 229

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 16/234 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            +      P R  ++     +   +   + +    + VGA+            ++   +V
Sbjct: 1   MSEVPGRRPARVVVVDDQTVVREGIVMLLGLLPGVDVVGAAG---------DGEEAVRVV 51

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPA-GMDNRYCS 132
           +   P  ++  + +   D      +       T++     +   E++ P        Y +
Sbjct: 52  AELAPDVVLMDLRMPRCDGVEATRRIRSEHPGTQVVVLTTYADDESLFPALHAGARGYLT 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  I   +  +   G   L   +    L    ++               LT RE E
Sbjct: 112 KDAGGDEIVRAVHSVL-SGDAGLAPSIQRRLLEWLSESESEPRPTGPPEPPDGLTTRETE 170

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I+EG T+ +IA  L +S  TV  +I ++  KT  K R+ A+ YA    +V
Sbjct: 171 VLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV 224


>gi|302540643|ref|ZP_07292985.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458261|gb|EFL21354.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 227

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 16/225 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ R++  D           L +       ++      QE    ++V    P  ++  + 
Sbjct: 1   MIIRVLLADDQALLRATFRILID-SEPDMTVVAEATDGQEALDLALV--HEPDVVLMDIR 57

Query: 92  LSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +   D     +   +          +  T   N      +          + +      L
Sbjct: 58  MPGTDGLTATMDICSRPEMSTTRVLILTTFENNENVAKALRAGASGF---LGKDVGPEFL 114

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-----WGKDFELTGREVECLTWISEGK 201
           L     +   D L               + D         +   LT RE E +   + GK
Sbjct: 115 LSGIRTVAAGDSLLSPTATRTLITRFLATPDTDTPLAPPERLAALTEREREVMALAAHGK 174

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV ++I   M K   + R+  +  A ++ +V
Sbjct: 175 SNAEIADQLVVSPLTVRSHIQRAMTKLDVRDRAQLVVIAYQSGLV 219


>gi|253572144|ref|ZP_04849548.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|251838324|gb|EES66411.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 230

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVE 192
             ++  I    ++L        +  + EI   L   +      + +    + +LT REVE
Sbjct: 116 VLEIDEIGNPFLVLGVVDLSPDQKDMDEIKFRLVNNKTGEMTPFPLTEETNIKLTKREVE 175

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +++G  S EI+  L IS +TVNN+  +I++K  T     AI YA +  ++
Sbjct: 176 ILKLVNKGMFSKEISDSLSISVHTVNNHRQNILQKMNTDNVVEAINYARKLGLL 229


>gi|320333847|ref|YP_004170558.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755136|gb|ADV66893.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 215

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 77/219 (35%), Gaps = 9/219 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE-----QKLDSIVSSDWPFDLV 87
           + R+  ++        + ++ +  G    +    D  Q      +    +V  D     +
Sbjct: 1   MIRVALVEDQTLVRQGLRSMLDLAGDMQVIGEAEDGVQATERLPELRPDVVLLDLRMPHL 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             + + ++   +  L  P  L    F      +         Y      + ++   +  +
Sbjct: 61  DGLGVLQRLSAHGTL--PPTLVLTTFDDDELILECVQAGARGYLLKDVALPQLLQAIRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              GR +       +  L   +A    +          LT RE + L  ++ G ++ EIA
Sbjct: 119 AGGGRWLQPAVTQRV--LRGLEAFRPAAEPFTPCDAVTLTDRECDVLRLLAGGYSNREIA 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L  +  TV +Y+++++ K   + R+ A+  A+   ++
Sbjct: 177 GALRTTEGTVKSYVSNVLSKLGVRDRTRAVLKALELGVL 215


>gi|325964357|ref|YP_004242263.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470444|gb|ADX74129.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 241

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            LL  + +       V       LT RE E L  ++ G  + EIA  L +S  TV  ++ 
Sbjct: 155 SLLRHFSSRAADGQSVPTADISVLTAREREVLGAMAVGLKNAEIANKLFLSETTVKTHVH 214

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+ K     RS A+A A R+ ++
Sbjct: 215 RILLKLGLSDRSQAVAVAYRSGLI 238


>gi|312140713|ref|YP_004008049.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311890052|emb|CBH49370.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 222

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+    +V  D     +  +  + +    +    P  +    F      ++  +   + +
Sbjct: 44  ERTAADVVLMDVQMPHLDGIEATRRLTARD--DSPKVVVLTTFENDEYVMSAISAGASGF 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   +  +     +I      +   L  +   M  S         ++T RE
Sbjct: 102 LLKDVPPEELLAAIRTVHRGDAVIEARSTRK---LLQHVGPML-SDSAAPSLPEDMTPRE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  ++ G ++ EIA    +S  TV  ++  ++ KT ++ R  A+ YA +  +V
Sbjct: 158 IEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVGLV 213


>gi|282862235|ref|ZP_06271298.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563260|gb|EFB68799.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 230

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 10/178 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +  +        L     +    F      +         +     
Sbjct: 51  DVVLMDIRMPGTDGLTATRTISADPELAGVRIVMLTTFEVDEYVVQALRAGAAGFLGKGA 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTG 188
           +   +   + +      ++        GL+A + A      D   G+          LTG
Sbjct: 111 EPDELLNAIRIAAAGEALLSPAATK--GLIATFLAQA-PDADGDLGRSTAYSELLDALTG 167

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  ++ G ++D+IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 168 REREVLVLVAGGHSNDQIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 225


>gi|325929180|ref|ZP_08190322.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325540465|gb|EGD12065.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 213

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L  ++ G ++ +I   L IS  TV  ++ +I+ K   + R+ A+  A+R
Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALR 205

Query: 243 NNIV 246
             I+
Sbjct: 206 RGIL 209


>gi|297158191|gb|ADI07903.1| two-component system DNA-binding response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 243

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 10/158 (6%)

Query: 92  LSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           L           RP   L   V     + I    G    Y + T     +   +  +   
Sbjct: 93  LRRSAALMAAADRPVRFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDAIFRVSEG 152

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAV 208
             +           LA +  + F S D     +    LT RE E L  I+ G    EIA 
Sbjct: 153 DAVFSP-------RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAK 205

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV +++++++RK     R     +A    +V
Sbjct: 206 QLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 243


>gi|107101332|ref|ZP_01365250.1| hypothetical protein PaerPA_01002366 [Pseudomonas aeruginosa PACS2]
 gi|296389701|ref|ZP_06879176.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAb1]
          Length = 160

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           LW   +L A   ++     V    +  LT RE E L W + GKT  EI +IL I + TV 
Sbjct: 73  LWITSMLQATFGDLLAPRIVPES-NVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVK 131

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I + MRK  +  ++ A   A    ++
Sbjct: 132 FHIVNAMRKLNSSNKAEATMKAYAIGLL 159


>gi|138894013|ref|YP_001124466.1| response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|134265526|gb|ABO65721.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Geobacillus thermodenitrificans
           NG80-2]
          Length = 531

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------- 184
           + F V     G++ +  K     ++    +  L A    M  S                 
Sbjct: 401 VPFFVRDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSE 460

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE++ L  + +G ++ EI+  L IS +TV N+I +I +K     RS  IA
Sbjct: 461 QLTSREMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 514


>gi|54024206|ref|YP_118448.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54015714|dbj|BAD57084.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 222

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 8/161 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L     +   +    + +R  +    V  T  ++      +               +   
Sbjct: 70  LSTGSDIEGLEVCSELTRRFPQAGVLVLTTFLDDALVLEAIHRGAKGYVL----KDVDTT 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            L    R + RD            A++         ++  LT RE + L  ++ G ++ E
Sbjct: 126 ALVSSIRAVARDE----SAFDPRSASVMMRTIRTAPEEPTLTDRETKVLELLARGMSNRE 181

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   L IS  TV  ++ +IMRK +  TR+GA+  A +  ++
Sbjct: 182 IGGRLYISETTVKFHVRNIMRKLSASTRAGAVYEASKLGLI 222


>gi|317128933|ref|YP_004095215.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315473881|gb|ADU30484.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 708

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 17/176 (9%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             +Q + SI+   W   + R +AL+EK     ++     L      ++           +
Sbjct: 545 ISDQNILSILEGYWEA-VERKVALNEKSDILALISHYV-LHNENIESIRNLTHISESKRS 602

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +      V      +M+       I  +                +S      +D +L+ 
Sbjct: 603 SFIQFISQVNITESEIMISSENKSPINMEE---------------RSPKSKITEDLKLSK 647

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE++ L  + +G ++ +IA  L IS +TV N++  I++K     RS AIA   +  
Sbjct: 648 RELDVLDLVLKGYSNSDIANTLFISDHTVKNHMTKILQKLDCTDRSQAIAKVYQMG 703


>gi|297561144|ref|YP_003680118.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845592|gb|ADH67612.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 218

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 6/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +    F              + +         I   + L      ++    L  +  
Sbjct: 77  PRVIVLTTFDNDDYVWGALRAGAHGFLLKRTPPEDILAAIRLAHRGDTLLFPTALRHL-- 134

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                A    +          LT RE + LT +++G T+ EIA  L +   TV  +++ I
Sbjct: 135 ----AATQPAAPTPAARAVATLTQRESQTLTLMAQGLTNAEIADRLFLGTETVKTHVSHI 190

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R+ A+  A  + ++
Sbjct: 191 LTKLGVRDRTQAVIAAYDSGLI 212


>gi|283781707|ref|YP_003372462.1| two component LuxR family transcriptional regulator [Pirellula
           staleyi DSM 6068]
 gi|283440160|gb|ADB18602.1| two component transcriptional regulator, LuxR family [Pirellula
           staleyi DSM 6068]
          Length = 211

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            ++   +  +    +  LT RE E L  +  G+T+ +IA +LGIS  TV  ++  ++ K 
Sbjct: 134 VSSALAAARIDQQIEAPLTQREGEVLKHVCSGRTNQQIAELLGISYETVKEHVQHLLEKI 193

Query: 229 ATKTRSGAIAYAVRNNI 245
               R+ A  +AVR  +
Sbjct: 194 GVADRTQAAIWAVRAGL 210


>gi|227834277|ref|YP_002835984.1| two-component response regulator ChrA [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183011|ref|ZP_06042432.1| two-component response regulator ChrA [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227455293|gb|ACP34046.1| two-component response regulator ChrA [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 206

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 16/171 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +A +        L  P  L    + T  + +         Y     
Sbjct: 51  DVVVCDIQMPDVDGIAATR---RVRELDGPPVLILTTYDTQADILAAVEAGALGYLLKDA 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   ++      R +  +      LLA   A            +  L+ RE+E L 
Sbjct: 108 PEDTLHTAVLDTAAGKRTLAPEV---TNLLAERLAQ----------PETALSPRELEILQ 154

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S G ++ +IA  L IS  TV  ++  + +K   +TR+ A++ A    ++
Sbjct: 155 ALSTGASNKQIAQRLFISEATVKTHLIHVYQKLGVETRTAAVSAARERKLI 205


>gi|196250317|ref|ZP_03149010.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|196210206|gb|EDY04972.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
          Length = 552

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------- 184
           + F V     G++ +  K     ++    +  L A    M  S                 
Sbjct: 422 VPFFVRDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSE 481

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE++ L  + +G ++ EI+  L IS +TV N+I +I +K     RS  IA
Sbjct: 482 QLTSREMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 535


>gi|32141276|ref|NP_733677.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|256784694|ref|ZP_05523125.1| response regulator [Streptomyces lividans TK24]
 gi|289768580|ref|ZP_06527958.1| response regulator [Streptomyces lividans TK24]
 gi|1542943|emb|CAA69209.1| redZ [Streptomyces coelicolor A3(2)]
 gi|24429546|emb|CAD55237.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|289698779|gb|EFD66208.1| response regulator [Streptomyces lividans TK24]
          Length = 217

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  +++GKT+ E+A  L +S  TV +++  I+RK    TR+ A+A A  + 
Sbjct: 145 ELTPRETEVLLLLTQGKTNTEMAATLSVSPTTVRSHVHRILRKLGAATRAQAVAIAYESG 204

Query: 245 IV 246
           ++
Sbjct: 205 LL 206


>gi|329934362|ref|ZP_08284441.1| two-component response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|329305958|gb|EGG49813.1| two-component response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
          Length = 221

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 18/224 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++  D           L +   +   + V  +     +   +  +  P  ++  + 
Sbjct: 1   MTIRVLLADDQTLLRATFRILID---SCSDMEVVDEAADGARAVELTRAHRPDVVLMDIR 57

Query: 92  LSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +   D      +   +        L    F T            + +         +  G
Sbjct: 58  MPGTDGLAATSEICADPALAATRILVLTTFQTDEYVARALRVGASGFLGKDVSAEALLEG 117

Query: 144 LMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +  +     ++       +    LA  +A      D        LT RE E    ++EGK
Sbjct: 118 IRTVAAGDALLSPAATRALITRFLATPEAEAVTGPDAGV-----LTAREREVTELVAEGK 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  EIA  L +S  TV  ++     K   ++R+  +A A R+ +
Sbjct: 173 SDAEIAEQLFLSPLTVRTHVQRAKTKLDARSRAQLVAIAYRSGL 216


>gi|318061446|ref|ZP_07980167.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318077421|ref|ZP_07984753.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 229

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDE 205
           LF   R     R      +A+      ++           L+ RE E L  ++ G ++ E
Sbjct: 122 LFAAVRATADGRSVLAPAVASRLVTSLRAPGADETPPRTPLSAREREVLALVARGTSNRE 181

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  TV  ++  +  K     R+ A+A      I+
Sbjct: 182 IARALFLSEATVKTHLTHLYAKLGVTDRAAAVATGYERGIL 222


>gi|254424867|ref|ZP_05038585.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           PCC 7335]
 gi|196192356|gb|EDX87320.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           PCC 7335]
          Length = 412

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           +    S      K+  L+ RE E +  +++G    EI+  L IS  TV  +  +++ K  
Sbjct: 336 SPQHNSSPQPLSKESPLSAREQEVIMLLAQGLRDREISKQLFISERTVKFHTRNMLGKLG 395

Query: 230 TKTRSGAIAYAVRNN 244
            +TR+ A+  A +  
Sbjct: 396 VRTRTQAVFRATKQG 410


>gi|159897476|ref|YP_001543723.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890515|gb|ABX03595.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 799

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT I++GK++ EIA+ L +S  TVNN++ +I RK    TRS A   A    +
Sbjct: 732 LTKREHELLTLIAQGKSNSEIALELVLSPFTVNNHLRAIYRKLGVSTRSAAAYIARERGL 791

Query: 246 V 246
           +
Sbjct: 792 L 792


>gi|329939465|ref|ZP_08288801.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301694|gb|EGG45588.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 223

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 8/165 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   L   +    +  +P     L    F       +      + +         +   
Sbjct: 56  VRMPKLDGVEATRRICAQPDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGK 201
           +  +     ++          L    A M    +     +    LT RE E +  +++G 
Sbjct: 116 IRSVHSGDAVVAPSTTRR---LLDRFAPMLPDTNQRPRHEGLERLTEREREVMVLVAQGL 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|298250569|ref|ZP_06974373.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548573|gb|EFH82440.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 222

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 10/204 (4%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQR 104
            +  + E  G   F LV  D         ++    P  ++  + +   D       + +R
Sbjct: 22  GLRMMLEIAG-EGFTLVG-DAADGVAALCVIEELQPDVVLMDLRMPGMDGLEAITQIRER 79

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              +   +  T  E+     G+    C   L           +    +G ++L+  +  +
Sbjct: 80  WPHIAIVILTTYNEDNLMLRGLRAGACGYLLKDTDRETLFHAIRAAARGDLLLQPEI--M 137

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             + A   +   S       + ELT RE E L  ++ G+ S EIA  LGIS  TV +++ 
Sbjct: 138 ARILARTTDAPHSTPSRPQAE-ELTERECEVLEAVARGERSKEIASRLGISLRTVGSHLT 196

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           SI  K    +R+ A+A  +   ++
Sbjct: 197 SIYSKLGVDSRASAVATGIERGLL 220


>gi|291299547|ref|YP_003510825.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568767|gb|ADD41732.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 4/170 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  + +    + L     +    F       +        +     
Sbjct: 49  DVVLMDIRMPVLDGLEATRRIAADDRLAAVRVIILTTFDLDDYVYSALRAGAGGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   + ++     +I         LLA +             +   LT RE E L 
Sbjct: 109 EPAELIHAVRVVARGDALIAPTITRR--LLADFATQ--HRAPQPNPRLNALTERETEVLG 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I+ G ++DEIA  L +S  T   +++ IM K   + R+  +  A  + I
Sbjct: 165 LIAAGLSNDEIAAKLFLSPATSKTHVSRIMSKLGARDRAQLVILAYESGI 214


>gi|254430340|ref|ZP_05044043.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001]
 gi|197624793|gb|EDY37352.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001]
          Length = 99

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 44/73 (60%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              ++   ++ +L+ RE+E +  ++EG T+ EIA  L IS+ TV+N++++I  KT  K R
Sbjct: 11  MGRELQQSQERDLSERELEIIALVAEGLTNQEIAGTLTISKRTVDNHVSNIFTKTGAKNR 70

Query: 234 SGAIAYAVRNNIV 246
              + +A+ +  +
Sbjct: 71  VALLNWAMDHGKI 83


>gi|302546104|ref|ZP_07298446.1| transcriptional regulatory protein DegU [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302463722|gb|EFL26815.1| transcriptional regulatory protein DegU [Streptomyces
           himastatinicus ATCC 53653]
          Length = 228

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R  +G  +  P    ++   L E   LA+ 
Sbjct: 96  HADVLEAVKSGATGYLLKSASTEELIDAVRRTAVGDAVFTPGLAGLV---LGEYRRLASE 152

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A       V      +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 153 PAPATADQPVAP----QLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 208

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 209 QLHNRVELVRYAIEAGL 225


>gi|256375685|ref|YP_003099345.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255919988|gb|ACU35499.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 238

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               EL+ REVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A
Sbjct: 172 NTPRELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALA 231

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 232 MRAGVI 237


>gi|299535065|ref|ZP_07048391.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1]
 gi|298729561|gb|EFI70110.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1]
          Length = 376

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 2/153 (1%)

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           +      ++P  L  P  +   E+I         +  +  +             +     
Sbjct: 223 ENTILSSRKPIYLKNPKNYVKEEHIQLFNLSSIIFIPILCEDQLFGWLTFDQLGEEFDCT 282

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGIS 213
           ++ L  +  +                K+    LT RE   L  ++EG  + +IA +L +S
Sbjct: 283 KEELTLLEEVGKRLGLFLSRKGEKVEKNTVLHLTERESMILGLLAEGYDNKKIAGLLFLS 342

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TV +Y++S+M K   K R+  +A A R  ++
Sbjct: 343 EHTVRDYVSSLMTKLKAKNRTQVVASAFRLGLL 375


>gi|302553186|ref|ZP_07305528.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470804|gb|EFL33897.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + + + D      +   +   P       F       +      + +         +  
Sbjct: 55  DVRMPKLDGVETTRRICADTDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLT 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201
            +  +     ++         LL  +   +  +      ++ E LT RE E +  +++G 
Sbjct: 115 AIRSVHSGDAVVAPSTTRR--LLDRFAPMLPGTATQPQHQELERLTDREREVMVLVAQGL 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 173 SNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|269124386|ref|YP_003297756.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309344|gb|ACY95718.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 222

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 9/162 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIGLM 145
            M   E  +      R   +   +  T   +    A +    C       +   +   + 
Sbjct: 59  GMDGLEATRRITADPRLENVRVVILTTFDLDDYVYAALRGGACGFLVKDTEPQELIRAVR 118

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +      +I         L+A +   +   + D        LT RE E +  ++ G ++D
Sbjct: 119 VAARGDALISPSVTRR--LIAEFTGRVKAPAPDPRLNA---LTEREREVMRLVAAGLSND 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  T   +++ IM K   + RS  +  A  + +V
Sbjct: 174 EIAGRLVLSPATAKTHVSRIMSKLGVRDRSQLVVLAYESGMV 215


>gi|182413103|ref|YP_001818169.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840317|gb|ACB74569.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 209

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  I++GK + EIA +L IS  TV +++ +IM K     R+ A+  AV+  
Sbjct: 146 ELTSREIQVLQEIAKGKANKEIAAVLAISEYTVKDHLKNIMGKLHVAVRTEAVTAAVQRG 205

Query: 245 IV 246
           I+
Sbjct: 206 II 207


>gi|326383391|ref|ZP_08205078.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197797|gb|EGD54984.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 219

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 2/141 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              +         +++            +        +  +     G+ +    L   GL
Sbjct: 78  CAHVLVLSASDERDDVLEAIKAGATGYLVKSAQRSELVAAVRATGDGQAVFTPGL--AGL 135

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +      + +S          LT RE E L  +++G +S +IA  L IS  TV N++ + 
Sbjct: 136 VLGEYRRIARSPGEADAAVPTLTQRETEVLRHVAKGLSSRQIATRLEISPRTVENHVGAA 195

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           +RK     R     YA+ + +
Sbjct: 196 LRKLQLGNRVELTRYAIEHGL 216


>gi|300863456|ref|ZP_07108411.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300338519|emb|CBN53553.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 244

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GL 164
           V              D  +  L   V     G   +      I+  R+            
Sbjct: 102 VLAAFAAGADSYCMKDVSFEKLVEAVVETNAGENWIDSSIARIVLARMNNPFKEAVNSAT 161

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ++    N  +    H      LT RE E +  I EG +++EI   L IS  TV  ++ +I
Sbjct: 162 ISTVSINGVEPEYSHLLMANPLTEREKEVIELIVEGCSNEEICKQLYISLGTVKTHVRNI 221

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K +   R+ A   A+R  +V
Sbjct: 222 LNKLSCDDRTQAAVRALRAGLV 243


>gi|239942209|ref|ZP_04694146.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988676|ref|ZP_04709340.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445663|ref|ZP_06585053.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348610|gb|EFE75514.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 226

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 9/165 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + +   D      +   +   P       F       +      + +       A +  
Sbjct: 57  DVRMPRLDGVEATRRICAQQDPPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLA 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGK 201
            +  +     ++         LL  +   +         K   +LT RE E +  +++G 
Sbjct: 117 AIRSVHSGDAVVAPSTTRR--LLDRFSPMLPSGEKEPKNKHVGKLTEREREVMLLVAQGL 174

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 175 SNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLV 219


>gi|239931733|ref|ZP_04688686.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440102|ref|ZP_06579492.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342997|gb|EFE69953.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 8/184 (4%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L +EQ+ D +V  D        +A +        L     +    F      +       
Sbjct: 43  LAREQRAD-VVLMDIRMPGTDGLAATRMISADPALAAVRVVILTTFEVDDYVVQSLRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----GK 182
           + +     +   +   + +      ++        GL+A + A    + +         +
Sbjct: 102 SGFLGKGSEPDELLNAIRIAAEGEALLSPAATK--GLIARFLAQEVAAGEADRDPARAER 159

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A  
Sbjct: 160 LESLTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYE 219

Query: 243 NNIV 246
           + +V
Sbjct: 220 SGLV 223


>gi|170079118|ref|YP_001735756.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886787|gb|ACB00501.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 226

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110
           +Y+    + ++      E     I+    P  ++  + + E D Y    NV Q     + 
Sbjct: 39  DYLEFRGYDMLTAANGVEGL--QILEETTPDLIICDVMMPEMDGYTFIQNVRQNSQISWI 96

Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           PV     +      I       + Y    F+   +   +     + R I    L   G  
Sbjct: 97  PVIFLSAKGQTCDRIEGLNQGADVYLVKPFEPEELVAQVESSLNQARRI----LSHSGAT 152

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            +  A    S+        ELT  E + ++++++G ++ EIA  L +S+ T+ +++++++
Sbjct: 153 TSSMAFQVPSH-------VELTPTETKVVSFVAQGLSNREIAEKLNVSQRTIESHVSNML 205

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            KT+   R+    +A+ + +V
Sbjct: 206 NKTSLNNRTELARWAMDSRLV 226


>gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9902]
 gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9902]
          Length = 245

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 16/189 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +Q L  +V SD     +    L +K +    L     +F        +         + Y
Sbjct: 59  QQMLPDVVISDVMMPRLDGYGLLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDY 118

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---------AYQANMFKSYD 177
               FD   +   +  +  + + +L++       ++G +A           QA    S D
Sbjct: 119 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSKD 178

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                    T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  +
Sbjct: 179 PVA---HSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELV 235

Query: 238 AYAVRNNIV 246
            YA+ + +V
Sbjct: 236 RYALEHRLV 244


>gi|284028348|ref|YP_003378279.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283807641|gb|ADB29480.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 210

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 79/216 (36%), Gaps = 13/216 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R+  +D        M AL +  G     +V  +       + +V++  P  ++  + L
Sbjct: 1   MIRVALVDDHPVVRAGMRALVD--GQDDLTVVG-EASDAHSAEQLVAAVRPDVVLMDLNL 57

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG- 151
                      R   L  P     P+ +               D       L    P   
Sbjct: 58  GRGPGGVEATARLRALPEP-----PQVLVLTTYDTEADIMSAIDAGASGYLLKDAPPDDL 112

Query: 152 -RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            R I      E+ L  A  A + K           LT REVE L  ++ G+++ E+A  L
Sbjct: 113 FRAIRGTARGEVVLAPAVAARLVKR---AGSPGPVLTEREVEILGLLATGQSNRELAKRL 169

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  TV ++++ I  K    TR+ A+A A+  +I+
Sbjct: 170 FVSEATVKSHLSHIYTKLGVDTRAAAVARAIEQHII 205


>gi|209528219|ref|ZP_03276686.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209491341|gb|EDZ91729.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 236

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 12/151 (7%)

Query: 108 LFCPVFHTLPENITPP-AGMDNRYCSLTFDVARIRIGLMLLFPKGR----IILRDRLWEI 162
           +     H   + +    +   + Y      + R+   + +          +I R  L + 
Sbjct: 85  ILILTMHDNKDAVMGAFSAGADSYSVKDVSIDRLMEAIQVTSEGNSWIDPVIARTVLQQA 144

Query: 163 GLL-------AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
             L       A    N  +     +     LT RE+E L  I  G+++ EIA  L I+  
Sbjct: 145 QNLPGENKDAATVTINAVEPEYKEFLSTCPLTERELEVLELIVGGRSNAEIAEKLYITVG 204

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  ++ SI+ K     R+ A   A+R+  +
Sbjct: 205 TVKTHVRSILNKLCADDRTQAAVRALRSGWI 235


>gi|297192611|ref|ZP_06910009.1| two-component system DNA-binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151436|gb|EFH31165.1| two-component system DNA-binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T   + +   +  +     +           L
Sbjct: 94  RFLALSVSDAAEDVIGVIRGGARGYVTKTITGSDLVDSVFRVQDGDAVFSP-------RL 146

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 147 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 206

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 207 VLRKLQLSNRHELTRWATARRLV 229


>gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 231

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 81/215 (37%), Gaps = 22/215 (10%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           A+ EY+  S F +      +E     ++    P  ++  + + + D Y+    +      
Sbjct: 17  AVKEYLQESGFKVQTASNAREGWD--MMQHSIPDLVISDIMMPQVDGYHFLKQMRDDARF 74

Query: 108 LFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIR--IGLMLLFPKGRIILRDRLW 160
              PV     + +T           + Y +  FD   +   +  +L+    +  +     
Sbjct: 75  QALPVVFLTAKGMTGDRIQGYQAGVDAYLAKPFDPDELVAIVENLLVRHTVKTQVASEDT 134

Query: 161 EIGLLAAYQANMFKSYDVHWGKD----------FELTGREVECLTWISEGKTSDEIAVIL 210
           E   +A     + K  D+   ++           +LT RE   L  ++EG  + EIA  L
Sbjct: 135 ENMDIAKLAHEISKIKDLLSPRNAITQTPPPFKIDLTPREQSVLNLVAEGLMNKEIARRL 194

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             S   V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 195 ETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|94497063|ref|ZP_01303636.1| transcriptional regulator, LuxR family protein [Sphingomonas sp.
           SKA58]
 gi|94423435|gb|EAT08463.1| transcriptional regulator, LuxR family protein [Sphingomonas sp.
           SKA58]
          Length = 248

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 17/232 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D  A    +    + +  M  +T+ +G  H+ LV   +  +  + S+   D+P D V   
Sbjct: 10  DFCAVAGAIKDATALSDLMAEITKAMGFRHYALVHH-VDLKPAVRSVHIVDYPQDWVERF 68

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA------------ 138
                     + +           +  ++I      D    +  ++              
Sbjct: 69  QARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIP 128

Query: 139 -RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ---ANMFKSYDVHWGKDFELTGREVECL 194
             +          G ++   +L  + L+ ++    A           +   LT R+ EC+
Sbjct: 129 GELNGSCSFAMAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTERQAECV 188

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ GKT  EI+ ILGI + TV  ++     +     R+     A+    +
Sbjct: 189 ALVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRALFEGQI 240


>gi|330470343|ref|YP_004408086.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328813314|gb|AEB47486.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 213

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +L+   A       +    +  L+ RE+E LT ++ G T+ E A  L IS  TV  ++ 
Sbjct: 126 SVLSPAVAGRLMGR-LRAPAEEPLSQRELEVLTLVARGSTNREAAAQLFISEATVKTHLL 184

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            +  K     R+ A+A A    ++
Sbjct: 185 HVYAKLGVNDRAAAVAVAYDRGLL 208


>gi|315445195|ref|YP_004078074.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1]
 gi|315263498|gb|ADU00240.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1]
          Length = 519

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 2/115 (1%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREV 191
             +    R+ L       R+  R R   +  LA  A  +    +      +   LT RE+
Sbjct: 402 AVEPRPYRVALSPAAAATRLRDRVREGHLDELAVDAVLSAAGHAARRVSARPGGLTPREI 461

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G ++ EIA  LGIS  T  N++     K     R GA  +A+ + ++
Sbjct: 462 EVLCLVARGASNKEIAATLGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516


>gi|284032594|ref|YP_003382525.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811887|gb|ADB33726.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 212

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G T+ +IA  L +S  TV N++ + +RK     R+  + YA+ N 
Sbjct: 147 QLTERETEVLRLVARGLTAKQIAQRLVLSHRTVENHVQNTLRKLQLHNRAELVRYAIENG 206

Query: 245 I 245
           I
Sbjct: 207 I 207


>gi|227549911|ref|ZP_03979960.1| possible nitrate/nitrite response regulator protein NarP
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078007|gb|EEI15970.1| possible nitrate/nitrite response regulator protein NarP
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 215

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 49/151 (32%), Gaps = 18/151 (11%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y +       +   +  +                 L
Sbjct: 71  KFLALSVSDAAEDVIALIRAGARGYVTKNIAGDELAEAIERVHGGDAYFSP-------RL 123

Query: 166 AAYQANMFKSYDVHWGKDFE-----------LTGREVECLTWISEGKTSDEIAVILGISR 214
           A +  + F S  V    + E           LT RE+E L  ++ G T  EI   L IS 
Sbjct: 124 AGFVLDAFASGGVVEDPEGEPVKVEGPLVDALTRRELEVLRLLARGYTYKEIGAQLFISV 183

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            TV  + ++I+RKT T  R     +A    +
Sbjct: 184 KTVETHASNILRKTQTSNRHQLTRWAADRAL 214


>gi|256380987|ref|YP_003104647.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255925290|gb|ACU40801.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G ++ EIA  L +S  TV  ++  I+ K   + R  A+  A    +
Sbjct: 153 LTEREREVLVLIAKGMSNTEIARKLFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|91774800|ref|YP_544556.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91708787|gb|ABE48715.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 212

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 3/154 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L    ++     R   +   V     + +       + Y     +  ++   L  +  +
Sbjct: 62  GLETLRRFKAGSLRARFVVLTVSDAEDDLLEALRAGADGYLLKDMEPEQLCDSLKKIA-E 120

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  +++DRL E+  L                    LT RE E L ++++G ++  IA  L
Sbjct: 121 GVTVIQDRLTEV--LRQALQEQGSKPGPATPDQVSLTDREQEILQFLADGLSNKAIARKL 178

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           GIS  TV  ++  ++ K    +R  A  +A R  
Sbjct: 179 GISDTTVKVHVKHLLSKLRLTSRLEAAVWAHRQK 212


>gi|229591752|ref|YP_002873871.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229363618|emb|CAY50939.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 89

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+E L W SEGKT  EI+ I   S  TV  ++ +I  K     R  A+  A R  
Sbjct: 28  PLTPAELEILRWASEGKTVWEISQIRTTSEATVKFHLRNIYGKLEVSNRVQAMNEAARQG 87

Query: 245 I 245
           +
Sbjct: 88  L 88


>gi|300784317|ref|YP_003764608.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793831|gb|ADJ44206.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 213

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
              L          D    S+   +     G   +  +    L+ RL E           
Sbjct: 92  LAALRAGARGFLTKDADAESIARALRSAAAGQSTVDGE----LQRRLVEAAA-------- 139

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +S      +   LT RE+E L  I+ G ++ EIA  L +S  TV  ++  +  K   + 
Sbjct: 140 -RSAPPRVKEVEGLTARELEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRD 198

Query: 233 RSGAIAYAVRNNI 245
           R+ A+A+A R  I
Sbjct: 199 RAQAVAFAYRAGI 211


>gi|302536340|ref|ZP_07288682.1| two-component system DNA-binding response regulator [Streptomyces
           sp. C]
 gi|302445235|gb|EFL17051.1| two-component system DNA-binding response regulator [Streptomyces
           sp. C]
          Length = 231

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +           L
Sbjct: 96  RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQDGDAVFSP-------RL 148

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 149 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 208

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 209 VLRKLQLSNRHELTRWATARRLV 231


>gi|4096799|gb|AAD10462.1| orfx; function unknown; similar to response regulators of
           two-component regulatory systems; Method: conceptual
           translation supplied by author [Staphylococcus carnosus]
          Length = 185

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 23/183 (12%)

Query: 78  VSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPV----------FHTLPENITPP 123
           V    P  L+  +++   +        +++   +    +          FH L       
Sbjct: 10  VMQHQPDVLIMDLSMPPGESGLIATSKIVESFPDTKILILTMYDDEEYLFHVLRNGAKGY 69

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              +     L   V  +  G   + PK             L+  +  N  +  +      
Sbjct: 70  ILKNAPDEQLISAVRTVYRGDTYIDPK---------MTTSLVNEFVNNTGQDANSTNDPF 120

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L  I++G  + EIA  L +S  TV  +   IM+K   K++   + YA++ 
Sbjct: 121 RILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALKK 180

Query: 244 NIV 246
            ++
Sbjct: 181 KLL 183


>gi|319949743|ref|ZP_08023770.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
 gi|319436589|gb|EFV91682.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
          Length = 226

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 4/144 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           PT L   V     + I         Y + T     +   +  +   G  +   RL    L
Sbjct: 83  PTFLALSVSDAAEDVIAVIRAGARGYVTKTITGDDLADAVRRVA-DGDAVFSPRLAGFVL 141

Query: 165 LAAYQA---NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            A  +A      +   VH  +   LT RE E L  ++ G T  EIA  L IS  TV  + 
Sbjct: 142 DAFARAAPGPEERGEPVHDPEVDSLTPREKEVLRLLARGYTYREIAEELFISVKTVETHA 201

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
           ++++RKT    R     +A   ++
Sbjct: 202 SNVLRKTQQSNRHALTRWAQSRHL 225


>gi|284992446|ref|YP_003411000.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065691|gb|ADB76629.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 217

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 22/180 (12%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-----PVFHTLPENITPPAGMDNRY 130
            +V  D    ++  +A + + +      R   L        VF  L          D   
Sbjct: 51  DVVLMDLHMPVLDGIAATRRLRVEQPGVRVLALTTFDDDEDVFAALRAGALGYLLKDVSA 110

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----FEL 186
             L   V     G  +L P              + A   A   +  D    +       L
Sbjct: 111 DRLVEAVQAAARGESVLQPS-------------VAAKVVARFAQLDDAPRSRPQPLVVPL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++ L  +++G+++ EIA  L ++  TV N++ +++ K   + R+ A   A   +++
Sbjct: 158 SDRELDVLRLLADGRSNREIATALFLAEGTVKNHVTNVLGKLGARDRTQAALRARALDLL 217


>gi|226365940|ref|YP_002783723.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244430|dbj|BAH54778.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 220

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  +           P  +       + + +     +      L  
Sbjct: 50  DVVLMDVRMPEMNGLDAARVIL-SAGFDPPVRVLMLTTFDVDDYVYEALSIGASGFMLKD 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A   I  + +   G  +L   +     L A   +   +          LT RE E L 
Sbjct: 109 APAEELIRAVRVVADGEALLAPTVTR--RLIADVTSRRSTARRKPAALSALTPREREVLE 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L ++  TV  ++  ++ K   + R+ A+  A  + +V
Sbjct: 167 LIARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 217


>gi|254383084|ref|ZP_04998438.1| two-component system DNA-binding response regulator [Streptomyces
           sp. Mg1]
 gi|194341983|gb|EDX22949.1| two-component system DNA-binding response regulator [Streptomyces
           sp. Mg1]
          Length = 235

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +           L
Sbjct: 100 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQDGDAVFSP-------RL 152

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 153 AGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSA 212

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 213 VLRKLQLSNRHELTRWATARRLV 235


>gi|302381790|ref|YP_003817613.1| LuxR family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192418|gb|ADK99989.1| two component transcriptional regulator, LuxR family [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 208

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 9/159 (5%)

Query: 85  DLVRCMALSEKDKYYNVLQR-PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           D+     ++  +    +L+R PT +     H  PE +            L        + 
Sbjct: 55  DIRFGPGMNGLEAAGRILERAPTRILLLTLHDTPEYVRSALAAGATGYVLKDAGREELLH 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            +     GR  L   L            M  +          LT RE E L  ++ G T+
Sbjct: 115 AIRAVGAGRSALPGDLLRKA--------MAPTVGPRPDDLDRLTPREREVLESVARGLTN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            EIA  LGI   TV  ++  ++ K     R+ A  +A R
Sbjct: 167 KEIARDLGIGPGTVKAHVEKLIAKLGVADRTQAAVFAAR 205


>gi|297159648|gb|ADI09360.1| putative response regulator [Streptomyces bingchenggensis BCW-1]
          Length = 221

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 11/175 (6%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYCS 132
             P  ++  + +   D         ++        L    F T            + +  
Sbjct: 47  HHPDVVLMDIRMPGTDGLAATTAVCSDPDLSATRVLILTTFETEEYVARALRAGASGFLG 106

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREV 191
                  +   +  +     ++    L    L+  + A       +   +    LT RE 
Sbjct: 107 KDVTADALLTAIRTVASGDALLSP--LATRALITRFLATPAPGNHLAPPERLAVLTARER 164

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +   +EG ++ EIA  L +S  TV ++I   M K   + R+  +  A ++ +V
Sbjct: 165 EVMALAAEGMSNHEIAERLVVSPLTVRSHIHRAMTKLHARDRAQLVVVAYQSGLV 219


>gi|290961885|ref|YP_003493067.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260651411|emb|CBG74533.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 223

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 82/219 (37%), Gaps = 6/219 (2%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P R  +      +   +S  + +    + VG++       DL  E   D+++  D    +
Sbjct: 10  PLRVVVADDQASVREGLSLMLDLLPDIDVVGSAADGRQVLDLVAELSPDAVLL-DLHMPV 68

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  +  + +       + P      +     +     A        LT D  R+ I   L
Sbjct: 69  MDGIEATRRLTA----EHPEVAIVVLTTYADDRSVLDALRAGARSYLTKDADRMHIAATL 124

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 + +     +  LLAA       S          LT RE E LT I++G  + EI
Sbjct: 125 HSAAAGLSVLHPQVQATLLAAASGTAV-SDRPARKLPDGLTRREAEILTLIAQGLNNAEI 183

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S NTV  +I  +  KT ++ R+ A  YA R+ +
Sbjct: 184 ADRLFLSGNTVKTHINRVFAKTRSRDRAAATLYARRHGL 222


>gi|1217954|emb|CAA65307.1| regulatory protein [Erwinia chrysanthemi]
          Length = 250

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 80/230 (34%), Gaps = 28/230 (12%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
            +    +    +  G   +      + +++  D ++ S++P + V     +       V+
Sbjct: 13  STIQSYLNRKLKSYGDPKY--AYLIMNKKKPTDVVIISNYPTEWVDIYRNNNYQHIDPVI 70

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLM---------------- 145
                   P        I+        +  S  +D+      ++                
Sbjct: 71  LTAINKISPFSWDDDLVISSKLKFSRIFNLSKDYDIVNGYTFVLHSPGNNLAALSFMIEE 130

Query: 146 LLFPKGRIILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLTW 196
               +   I+++   ++ +L         + Y+       +    +    + RE E L W
Sbjct: 131 HRSEELEEIIQNNKDKLQMLLISAHEKLTSLYREMSRNRNNSKSQEADLFSQRENEILHW 190

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N++
Sbjct: 191 ASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|330947744|gb|EGH48203.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 120

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 139 RIRIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           +  IG    +   +++ L     +  LL    A    S +   G D  L+ RE+  L  I
Sbjct: 12  KALIGEHPRWLHEQLLHLPPCRVQAALLEKLPACCTPSPEPAHGGDC-LSVRELGVLQLI 70

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    ++
Sbjct: 71  AQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGLL 119


>gi|297158565|gb|ADI08277.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 218

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 7/163 (4%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPV-----FHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +   D          E  C V     F +            + +         +   
Sbjct: 55  DIRMPGTDGIEATGTICQETDCRVIMLTTFDSDEYVHDALHAGASGFLLKDVRRDDLVHA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++         L+A +     ++      +   LT RE E L  +  G ++
Sbjct: 115 VRVVTAGDSLLAPSVARR--LVADFVRRPRETAAPRSDRLAVLTARERETLQLLGRGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S +TV  ++++++ K   + R  A+  A    +V
Sbjct: 173 AEIAAELVVSEHTVKTHVSNVLTKLGLRDRIQAVICAYETGLV 215


>gi|228469458|ref|ZP_04054466.1| transcriptional regulator, LuxR family domain protein
           [Porphyromonas uenonis 60-3]
 gi|228309033|gb|EEK17676.1| transcriptional regulator, LuxR family domain protein
           [Porphyromonas uenonis 60-3]
          Length = 201

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           I  +   +    +  +    K   L+ RE E +TW++ G T+ EIA +L +S +TV  + 
Sbjct: 109 IQQIQESEQPEVELIESDESKQNPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHR 168

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I  K    + SG   YA+ NN++
Sbjct: 169 RNIAAKLDIHSPSGLTIYALMNNLI 193


>gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 232

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 18/188 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLP-----ENITPPAGMD 127
            I+    P  ++  + + E D Y     +   P     PV          + I       
Sbjct: 43  RILEKITPDVIISDIMMPEVDGYQFLEKLRDDPRFQGIPVIFLTARGMTSDRIKGYNSGC 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGR-----IILRDRLWEIG-----LLAAYQANMFKSYD 177
           + Y    FD   +   +  L  + +          +L EI      L             
Sbjct: 103 DAYLPKPFDPEELEAIVKNLLERRKTNEKTATDSAKLEEIAQEIRELKQQLGQQQNTLTT 162

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  +
Sbjct: 163 TPSPIKIDLTPREQSVLDLVAEGLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELV 222

Query: 238 AYAVRNNI 245
            +A+++ +
Sbjct: 223 RFALKHGL 230


>gi|163848683|ref|YP_001636727.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|163669972|gb|ABY36338.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
          Length = 890

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 9/129 (6%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                 G  N Y  +  +       L+            RL     +A   A   K   V
Sbjct: 769 GRALEIGKANGYVRIFLEEGEEMRHLLTQIH--------RLRRDDFVAELLAAFGKPAQV 820

Query: 179 HWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 E LT RE+E L  I+EG ++ EIA  L +S  TV  ++  I  K     R  A 
Sbjct: 821 VQSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKHIYGKLNVDDRVKAA 880

Query: 238 AYAVRNNIV 246
             A    ++
Sbjct: 881 GMARELGLL 889


>gi|331696706|ref|YP_004332945.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951395|gb|AEA25092.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 238

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               EL+ REVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A
Sbjct: 172 NTPRELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALA 231

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 232 MRAGVI 237


>gi|302547311|ref|ZP_07299653.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464929|gb|EFL28022.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 220

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V+ D    L+  +  +       V   P  +    F              + +     
Sbjct: 49  DVVAMDVRMPLMDGIEATRTVLR-TVPDPPKIIVVTTFENDEYVYGALRAGADGFLLKRA 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A I   + L+     ++    + ++   A+Y  N   +      +   LT RE + L 
Sbjct: 108 RPAEIVHAVRLVAEGDSLLFPAAVRQLA--ASYGENDGSAEGRAALERAALTEREGDVLR 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV ++++S++ K   + R+ A+  A  +  V
Sbjct: 166 LVARGLSNAEIAARLVVGTETVKSHVSSVLAKLGARDRTQAVIAAYESGFV 216


>gi|256395013|ref|YP_003116577.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361239|gb|ACU74736.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 441

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  L ++  TV  +++ ++ K   + R+ A+  A  + +
Sbjct: 367 LTPRETEVLLLIARGLSNPEIAAELVVTDETVKTHVSRVLTKLGLRDRTQAVVAAYESGL 426

Query: 246 V 246
           V
Sbjct: 427 V 427


>gi|271961678|ref|YP_003335874.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504853|gb|ACZ83131.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 207

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R +    L E  L  A  A +     V      EL+GRE   L  ++ G T+ E A  L 
Sbjct: 114 RAVRAAALGETVLSPAVAARLLNR--VRTPAPAELSGRERTVLALVARGSTNKEAAAALF 171

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  ++A I  K     R+ A+A A    ++
Sbjct: 172 ISETTVKTHLAHIYTKLGVSDRASAVAVAYSRGLL 206


>gi|145224867|ref|YP_001135545.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK]
 gi|145217353|gb|ABP46757.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK]
          Length = 519

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 2/115 (1%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREV 191
             +    R+ L       R+  R R   +  LA  A  +    +      +   LT RE+
Sbjct: 402 AVEPRPYRVALSPAAAATRLRDRVREGHLDELAVDAVLSAAGHAARRVSARPGGLTPREI 461

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G ++ EIA  LGIS  T  N++     K     R GA  +A+ + ++
Sbjct: 462 EVLCLVARGASNKEIAATLGISGKTARNHVERTYAKIGATNRIGASMFALGHGLI 516


>gi|504484|gb|AAC44880.1| AcoK [Klebsiella pneumoniae]
          Length = 921

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 25/194 (12%)

Query: 59  SHFLLVRWDLFQEQKLDSI----VSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--FCPV 112
           +  LL      QE + D +    + + W   L      +     +  + +  E      +
Sbjct: 746 ACVLLAEMVSDQESRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLAEQQHLTGL 805

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F    + + P     N     T    + + G+   +   R       +  G         
Sbjct: 806 FLDAGDTLQPLLAGMNE----TSSACKEKGGVHEPWADKRAPADGTPFNSG--------- 852

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D+      EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +
Sbjct: 853 --SPDIPG----ELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNS 906

Query: 233 RSGAIAYAVRNNIV 246
           R+ A++ A+   ++
Sbjct: 907 RTQAMSRALEMKLL 920


>gi|238893250|ref|YP_002917984.1| trans-acting regulatory protein of aco operon [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545566|dbj|BAH61917.1| trans-acting regulatory protein of aco operon [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 921

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE++ L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+ A++ A+   
Sbjct: 859 ELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 918

Query: 245 IV 246
           ++
Sbjct: 919 LL 920


>gi|171912623|ref|ZP_02928093.1| response regulator receiver protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 257

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 31/60 (51%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L WISEGKT+ + A IL IS  TV  ++  I  K   + R  A   A+  
Sbjct: 190 LGLTPREQEVLYWISEGKTNADTATILNISPGTVRVHLERIYPKLGVENRMSASRIALEK 249


>gi|126665815|ref|ZP_01736796.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Marinobacter sp. ELB17]
 gi|126629749|gb|EBA00366.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Marinobacter sp. ELB17]
          Length = 219

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 16/175 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPAGMDNRY 130
            ++  D     V  +    + + +N+  R      ++    V   L          D   
Sbjct: 53  DLILMDLNMPDVSGIEALRQLRAHNISSRIIMFTVSDQQDDVVEALRAGADGYLLKDMEP 112

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             +   + +  +G +++  +   +L D L              KS          LT RE
Sbjct: 113 EDMIKQLHQAAVGKLVISERLTSLLADALRNN-----------KSQQPARPDFDSLTPRE 161

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  I+EG ++  I   L IS  TV  ++  +++K   ++R     +AV   +
Sbjct: 162 KDILNLIAEGLSNKMIGRKLDISDGTVKVHVKHLLKKLNLRSRVEVAVWAVEEGL 216


>gi|104781941|ref|YP_608439.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110928|emb|CAK15646.1| putative transcriptional regulator, luxR family [Pseudomonas
           entomophila L48]
          Length = 235

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 83/228 (36%), Gaps = 13/228 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVR 88
             + ++            + ++   +G   F+L   +  +++ ++ I  V  DW  D +R
Sbjct: 8   QAVQQIEQATTLALIQSAVRSVARPLGYDRFVLFSANAARDEVVERIHWVEGDWFGDGLR 67

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARI 140
            +      ++  V +       P F +  E            P G       +       
Sbjct: 68  -VDAQTYIRHCPVNRHLLTAREPFFWSKREGEGGERYHVVRAPVGTGVHGLQVPVFGPAG 126

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFE-LTGREVECLTWIS 198
             G M L              + LLA    +  +   +   G++   L+ RE + L W +
Sbjct: 127 LEGAMSLGGLHIDASPATRMCLALLANAAFHAARRLLEAPVGQEVGVLSERERQVLAWTA 186

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G+   +IA  LG+S  TV N++ +  R+    T + AI  A+ + ++
Sbjct: 187 AGQRQADIAATLGLSVRTVENHLRAARRRLGVATTAQAIRIALGSGVL 234


>gi|318040623|ref|ZP_07972579.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CB0101]
          Length = 79

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +L+ RE+E +  +++G T+ EI   L IS+ TV+N+++++  KT  K R   + +A+ +
Sbjct: 1   MDLSERELEIIDLVAQGLTNQEIGERLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMDH 60

Query: 244 NIV 246
             +
Sbjct: 61  GKI 63


>gi|295837969|ref|ZP_06824902.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|295826775|gb|EFG65041.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 224

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 4/135 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P     L      +         
Sbjct: 91  VYQALRAGASGFLLKDASARQLAEAVEVVARGEALLAPSVTRRLITEFARVPETVL---- 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +     G   ELT RE E L  ++ G ++ EIA  L ++ +TV  +++ I+ K   +
Sbjct: 147 RGPAPPRTGGAYGELTERETEVLVHVACGLSNQEIAAKLYVAESTVKTHVSRILVKLGLR 206

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A  N +V
Sbjct: 207 DRTQAAVFAYENRLV 221


>gi|118465644|ref|YP_883262.1| response regulator receiver domain-containing protein
           [Mycobacterium avium 104]
 gi|118166931|gb|ABK67828.1| response regulator receiver domain [Mycobacterium avium 104]
          Length = 221

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 14/189 (7%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP----TELFCPVFHTLPENITPPAGM 126
           E     + ++D      R   +   D     +Q P     +    V    P +       
Sbjct: 29  ESGFAVVATADGVATAQRRAGVVRPDVVVMDMQLPDGDGAQATAAVLAVSPSSRVLVLSA 88

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRD----------RLWEIGLLAAYQANMFKSY 176
            +    +   V     G ++       + +               +  L   +       
Sbjct: 89  SDERDDVLQAVKAGAAGYLVKSASKAELAQAVTDTAAGRAVFTPSLAGLVLGEYRRIAQS 148

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE E L ++++G ++ +IA  L +S  TV N++ +  RK     R   
Sbjct: 149 KDDGPTRPRLTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVEL 208

Query: 237 IAYAVRNNI 245
             YA+ + +
Sbjct: 209 ARYAIEHGL 217


>gi|222526625|ref|YP_002571096.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|222450504|gb|ACM54770.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Chloroflexus sp. Y-400-fl]
          Length = 878

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 9/129 (6%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                 G  N Y  +  +       L+            RL     +A   A   K   V
Sbjct: 757 GRALEIGKANGYVRIFLEEGEEMRHLLTQIH--------RLRRDDFVAELLAAFGKPAQV 808

Query: 179 HWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 E LT RE+E L  I+EG ++ EIA  L +S  TV  ++  I  K     R  A 
Sbjct: 809 VQSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKHIYGKLNVDDRVKAA 868

Query: 238 AYAVRNNIV 246
             A    ++
Sbjct: 869 GMARELGLL 877


>gi|5051409|emb|CAB44989.1| NarL protein [Pseudomonas stutzeri]
          Length = 218

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     L   +     G M L P+   +L + +            
Sbjct: 95  VLEALRNGADGYLLKDMDAEQLIEQIRIAATGRMALSPELTQVLAEAIR----------- 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       +   LT RE E L  I++G+++  IA  LGI+  TV  ++ +++ K   +
Sbjct: 144 -VRPKPSGQVQFSHLTKREKEVLRLIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLR 202

Query: 232 TRSGAIAYAVRN 243
           +R  A  + + N
Sbjct: 203 SRVEAAVWVLEN 214


>gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 245

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 22/216 (10%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT---E 107
           A+  Y+  S F ++     Q+     ++S+  P  ++  + +   D Y  + Q       
Sbjct: 30  AVQAYLEDSGFEVIPAANAQQAL--QLLSTTQPQLIISDIMMPGMDGYQFLAQVRKLDPY 87

Query: 108 LFCPVFHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR---- 158
              PV     + +T           + Y    FD   +   +  L  + R          
Sbjct: 88  SHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIERSRAASPSEVVAR 147

Query: 159 --------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                   L E  L     +       +      ELT RE + L  ++EG  + EIA  L
Sbjct: 148 ELASIRALLSERTLPPTIPSQPPTPTPLPPPIKVELTPREQQVLEKVAEGLMNKEIAKQL 207

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             S   V  Y+  ++ KT T +R+  + YA+   ++
Sbjct: 208 QTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 243


>gi|307153141|ref|YP_003888525.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306983369|gb|ADN15250.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 220

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             +           L   +  +  G       G   LR+ L  +   ++ + +       
Sbjct: 99  GASGYCQKGIEAELLILALRSVAAGASWWDSTGTSSLREALTNVPFNSSVELSEIDLPQ- 157

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT RE+E L  I+ G T+ EIA  L I+  TV  ++ +I++K   + R+ A  
Sbjct: 158 ------PLTKRELEILALIATGHTNQEIAERLQITVGTVRVHVHTILQKLDVRDRTSAAV 211

Query: 239 YAVRNNIV 246
            A++  +V
Sbjct: 212 LAIQKGLV 219


>gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110]
 gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110]
          Length = 232

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 14/224 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVR--WDLFQ--EQKLDSIVSSDWPFDLVRCMA 91
           ++ +D   S    + A  EY G     +     D +Q  E+ +  ++ SD     V    
Sbjct: 7   ILLVDDEPSIRESVQAYLEYSGDLTVKVASNATDAWQVLEKTIPDVIISDIMMPEVDGYE 66

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
             EK +  +  +    +F        + I       + Y    FD   +   +  L  + 
Sbjct: 67  FLEKLRNDSRFEGIPVIFLTARGMTSDRIKGYHSGCDAYLPKPFDPEELEAIVKNLLERR 126

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----------FELTGREVECLTWISEGK 201
           +   +     + L    Q        +   ++           +LT RE   L  ++EG 
Sbjct: 127 KTNEKTATDSVKLEEIAQEIRELKQQLGQQQNTLITTPPPIKIDLTPREQSVLDLVAEGL 186

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ +
Sbjct: 187 MNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230


>gi|254471678|ref|ZP_05085079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp.
           JE062]
 gi|211958880|gb|EEA94079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp.
           JE062]
          Length = 233

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 13/210 (6%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-DWPFDL---VRCMALSEKDKYY- 99
               +  L    GASH L+    +   + +DS+V    WP +    V    LS  D    
Sbjct: 27  VESYLRRL----GASHILITGLPM-PNRTIDSLVHRFRWPDERNGGVERTTLSAGDSALM 81

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-- 157
             L     +   V  T   N    A +      +   V  +     ++   G  I  +  
Sbjct: 82  LGLSGNRPVVWSVSGTDTGNSELFAAIGEGARVMVIPVDALHPFQAMVVGAGHQIAAEPY 141

Query: 158 RLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            L  + ++ +          V    +  +L+ RE   L   + GKT+ EIA +L IS+ T
Sbjct: 142 DLASLEIVCSAAFRRLFELGVISDQRPGDLSARERRVLELTALGKTAHEIAELLEISQRT 201

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V+ ++ +   K     ++  +  A+R   +
Sbjct: 202 VHAHLQNASAKLNASNKTHTVVEALRYGQI 231


>gi|58580891|ref|YP_199907.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425485|gb|AAW74522.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 277

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183
           ++   +                    RL E  LL       A+QA   +  D    +   
Sbjct: 153 TVPLHLPGGAFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHH 212

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +  
Sbjct: 213 IPLTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 272

Query: 244 NIV 246
            ++
Sbjct: 273 RLL 275


>gi|297192920|ref|ZP_06910318.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151558|gb|EFH31236.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 9/165 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + +   D      +   E   P       F       +      + +         +  
Sbjct: 55  DVRMPRLDGVEATRRICAEPNAPKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLG 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGK 201
            +  +     ++         LL  +   +  +      K+   LT RE E +  +++G 
Sbjct: 115 AIRSVHSGDAVVAPSTTRR--LLDRFSPMLPSAGPEPRQKELARLTEREREVMMLVAQGL 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 173 SNGEIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|325675648|ref|ZP_08155332.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|325553619|gb|EGD23297.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 222

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 4/144 (2%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
             P  +    F      ++  +   + +         +   +  +     +I      + 
Sbjct: 74  DSPKVVVLTTFENDEYVMSAISAGASGFLLKDVPPEELLDAIRTVHRGDAVIEARSTRK- 132

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L  +   M  S         ++T RE+E L  ++ G ++ EIA    +S  TV  ++ 
Sbjct: 133 --LLQHVGPML-SDSAAPSLPEDMTPREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVG 189

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ KT ++ R  A+ YA +  +V
Sbjct: 190 RVLSKTGSRDRVQAVVYAFQVGLV 213


>gi|149923436|ref|ZP_01911840.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
 gi|149815688|gb|EDM75215.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
          Length = 220

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 13/132 (9%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQANMFK 174
           +    +      +    L   +  +  G     P   +I+L++   E            +
Sbjct: 97  IRAGASGYLLKGSGLSDLVTAIREVAGGNAFFSPTVAKILLQESRGE------------R 144

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S          LT RE E LT + EGK+S EIA ILG+S  T+  +   IM K      +
Sbjct: 145 SVKEAPDPADSLTKREREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGVHNVA 204

Query: 235 GAIAYAVRNNIV 246
           G +  A+R  +V
Sbjct: 205 GLVRQAIRIGLV 216


>gi|75909280|ref|YP_323576.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75703005|gb|ABA22681.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 209

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +  G  +  IA  L IS +TV  +++SI +K A  TR+ A+   VR  +
Sbjct: 147 LTPREIEVLQMLGSGLGNKAIAQSLHISDHTVKFHVSSIFQKLAVSTRTEAVTVGVRLGL 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|13472199|ref|NP_103766.1| response regulatory protein [Mesorhizobium loti MAFF303099]
 gi|14022944|dbj|BAB49552.1| respose regulatory protein [Mesorhizobium loti MAFF303099]
          Length = 211

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D H  +   L+ RE E L  ++EG  +  IA  L IS +T   ++A+I+ K     R+ A
Sbjct: 141 DEHAARP-ALSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDA 199

Query: 237 IAYAVRNNIV 246
           IA A+R  +V
Sbjct: 200 IAIAMRQGLV 209


>gi|308187897|ref|YP_003932028.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1]
 gi|308058407|gb|ADO10579.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1]
          Length = 215

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 13/134 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D    +L   + +   G ++L      IL  RL E          
Sbjct: 94  VVSALKRGADGYLLKDMEPEALLKALHQAAAGQIVLSEALTPILVARLRE---------- 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S         +LT RE + L  IS+G T+  IA  L IS +TV  ++  +++K   K
Sbjct: 144 ---SQPAQTRDISQLTRRERDILQLISDGMTNKAIARKLDISESTVKVHVKYLLKKINLK 200

Query: 232 TRSGAIAYAVRNNI 245
           +R  A  +A++N +
Sbjct: 201 SRLEAAVWALQNGL 214


>gi|298244586|ref|ZP_06968392.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297552067|gb|EFH85932.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 523

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 163 GLLAAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            L+A+ QA ++ K   +   +  +LT RE+E +  +++G+ + +IA  L IS+ TV +++
Sbjct: 439 ALVASLQAGDVGKKAVLKRSQATDLTQREIEVVRLLTQGQNTPQIARTLSISKKTVEHHL 498

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           A I  K     R+ A+AYAV+ N+V
Sbjct: 499 AHIYTKFGVSCRTAAVAYAVQQNLV 523


>gi|291006817|ref|ZP_06564790.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 215

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R I      E    +   A M  S +    +  ELT RE+  L  ++ G ++ +I   L 
Sbjct: 122 RAIRAVARGESAFDSRSAAAMVHSMNNRSSEP-ELTERELGVLRLLAAGSSNRQIGGQLY 180

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  T   ++ +IMRK    TR+ A+  A +  ++
Sbjct: 181 ISETTAKFHVRNIMRKLDVSTRAEAVYEASKRGLI 215


>gi|254425578|ref|ZP_05039295.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188001|gb|EDX82966.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 209

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+EGKT+ +I+  L I+ +TV  ++  I+ K     R+ AI  AV   I
Sbjct: 147 LSTREQEVLQLIAEGKTNLQISAELTIAASTVRFHVGHILDKLGVSDRTQAIVQAVNQGI 206

Query: 246 V 246
           V
Sbjct: 207 V 207


>gi|116621801|ref|YP_823957.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224963|gb|ABJ83672.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 225

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I  G ++ EIA  L I+R TV  ++  I+R+     R+ A+  AV+  I
Sbjct: 163 LSPREMDILRLIVRGLSNQEIADALNITRGTVKWHVNIILRRLDVNDRTQAVVVAVQRGI 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|94266341|ref|ZP_01290042.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93453055|gb|EAT03537.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 43/112 (38%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L  DV    +  M        I       I L    +              + LT RE E
Sbjct: 102 LQHDVDGYLLKTMPALKLVEAISDALTGAIVLPTGLKRQTPAPLQPSPENQYGLTPRERE 161

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L W+SEGK++ EI VI  IS NTV +++  +M K     R      AV + 
Sbjct: 162 ILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213


>gi|291298992|ref|YP_003510270.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568212|gb|ADD41177.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 203

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A Y+ +   S +       +LT RE + L   ++GK+++ I   L +S +T+  ++  + 
Sbjct: 127 AYYRGDQLPSINGK-----QLTVREYQILNCAAQGKSNEHIGRELFVSEHTIKTHLRRLF 181

Query: 226 RKTATKTRSGAIAYAVRNN 244
            K     R+ A+A A R  
Sbjct: 182 DKIGAANRAHAVAIAFRQG 200


>gi|239944210|ref|ZP_04696147.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990666|ref|ZP_04711330.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447682|ref|ZP_06587072.1| two-component system regulator [Streptomyces roseosporus NRRL
           15998]
 gi|291350629|gb|EFE77533.1| two-component system regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 224

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 9/162 (5%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +   E      ++    +L   V+  L    +     D     L   V  +  G 
Sbjct: 67  EATRRITSPEGSTVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADELAHAVRVVASGD 126

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            LL P              L+  +             +  +LT RE E LT I+ G ++ 
Sbjct: 127 ALLSPNITK---------RLIVEFSRTAGAPRAPLKERVGDLTERETEVLTLIASGLSNA 177

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 178 EIARQLIVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 219


>gi|228925087|ref|ZP_04088207.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228834569|gb|EEM80088.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 592

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 90/252 (35%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  V       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPDEGMLVTCTVPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117
             +V       Q +D +     P  ++  + + + D       + Q+   +   +F T  
Sbjct: 407 --VVGLAENGNQAID-LCGRLQPHVILMDLDMQQMDGVEATKKIKQQWPHIRILIFTTFQ 463

Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +    +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTKQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|72383356|ref|YP_292711.1| LuxR transcriptional regulator [Prochlorococcus marinus str.
           NATL2A]
 gi|72003206|gb|AAZ59008.1| regulatory protein, LuxR [Prochlorococcus marinus str. NATL2A]
          Length = 91

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 43/74 (58%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             + ++       L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MFTGEIANSSHMGLSAREMEIIGLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKN 60

Query: 233 RSGAIAYAVRNNIV 246
           R   + +A+ +  +
Sbjct: 61  RVALLNWAMDHGKI 74


>gi|300790034|ref|YP_003770325.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799548|gb|ADJ49923.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 218

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 10/170 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTEL------FCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + +   D      +   EL          F           G  + +      
Sbjct: 49  PDLVLMDVRMPVLDGVAATARICAELPDVRVLIITTFDLDEYAYAALRGGASGFLVKDAP 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              + + +  +     ++         LL  Y A+  +   +   +   LT RE + L  
Sbjct: 109 SEEMLVAIRGVLRGDSMVSPSVTRR--LLDRYLAD--ERDPMDIARLGVLTEREKDVLGL 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G ++ EIA  L I   TV  ++  ++ K   + R  A+ +A  + +V
Sbjct: 165 IARGLSNSEIAAKLYIGETTVKTHVGRVLGKLRLRDRVHAVVFAYESGLV 214


>gi|300785587|ref|YP_003765878.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795101|gb|ADJ45476.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 225

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 7/173 (4%)

Query: 77  IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS- 132
           +V    P  ++  + +   D       +          V  T  ++ +    +       
Sbjct: 53  LVEQHAPDVVLMDLRMPGVDGIEATRRIHDHHPATKIVVLTTYSDDTSILDALRAGALGY 112

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           LT D  R  I   +        + D      LLAA   +              LT RE E
Sbjct: 113 LTKDAGRDHIAQAIRTAAAGQAVLDPTIHARLLAATAHH---PDTPPSAPPDGLTTRETE 169

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            LT ++ G ++ EIA  L +S  T+   I  I  K     R+ A+ YA ++++
Sbjct: 170 VLTQLAAGHSNTEIARQLFVSETTIKTRINHIYAKIGAADRAQAVRYAYQHHL 222


>gi|297191756|ref|ZP_06909154.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151051|gb|EDY65636.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 231

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            M   E  +  + +     +    F +            + +         +   + ++ 
Sbjct: 56  RMDGIEACREISTVSACRTVMLTTFDSDEYVYEALHAGASGFLLKDVRRDDLVHAVRVVA 115

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++       +              D   G+   LT RE E L  +  G ++ EIA 
Sbjct: 116 RGDSLLAPSVARRLIEEYTRAVPRVPQPD---GRLESLTTRERETLLLLGRGLSNAEIAA 172

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S +TV  ++ +++ K A + R  A+  A  + ++
Sbjct: 173 ELVVSEHTVKTHVGNVLAKLALRDRIQAVICAYESGLI 210


>gi|116671431|ref|YP_832364.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611540|gb|ABK04264.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24]
          Length = 545

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++ GK +  IA  L +S  TV  +I++I  K   ++R  A  YA  + 
Sbjct: 483 PLTPREIEVLRLVAAGKANRVIAGELYLSEKTVARHISNIFLKLGLRSRVAATRYAFEHG 542

Query: 245 I 245
           +
Sbjct: 543 L 543


>gi|325290865|ref|YP_004267046.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966266|gb|ADY57045.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 212

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D +L+ RE E +  +S+G ++ +I   L I+ +TV N++ +I+ K   + R   +A+A
Sbjct: 145 SSDNKLSEREKEVVQLVSQGLSNKDIGEKLHITESTVKNHLRNILAKLHLRNRVQLVAFA 204

Query: 241 VRNN 244
            +N 
Sbjct: 205 YKNG 208


>gi|78062461|ref|YP_372369.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77970346|gb|ABB11725.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 215

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE+E L  ++EG ++  IA  LGI+  TV  ++ ++M K     R+ A+
Sbjct: 143 PPLSPFAALTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAV 202

Query: 238 AYAVRNNI 245
           A A R  +
Sbjct: 203 ALAWREGL 210


>gi|319442313|ref|ZP_07991469.1| putative two component response regulator [Corynebacterium
           variabile DSM 44702]
          Length = 213

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   +I   R    G  A   +   +           LT RE+E L  +++G+++
Sbjct: 111 LLKDAPPAELISAVRAAATGATAMSGSVATRLMHREEEPANALTSRELEVLQLVADGRSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 171 REIGATLFLSEATVKSHLVHINTKLGVRSRTSAVAAAREAGML 213


>gi|124024939|ref|YP_001014055.1| LuxR family regulatory protein [Prochlorococcus marinus str.
           NATL1A]
 gi|123960007|gb|ABM74790.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. NATL1A]
          Length = 90

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 43/74 (58%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             + ++       L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MFTGEIANSSHMGLSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKN 60

Query: 233 RSGAIAYAVRNNIV 246
           R   + +A+ +  +
Sbjct: 61  RVALLNWAMDHGKI 74


>gi|78062060|ref|YP_371968.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383]
 gi|77969945|gb|ABB11324.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. 383]
          Length = 889

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 7/154 (4%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG-----LML 146
             E  K    +     L     H L   +    G           V            +L
Sbjct: 733 AGELLKAALAITPARPLLSVKLHVLQALVQHRQGHTRLALRTLQGVRETASAGGCRRALL 792

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 + L D+  +  +    QA+  +S    W     L+ RE E L  +  G ++ EI
Sbjct: 793 DEGAELVALLDQAPDAEMPHTAQASEQRSPTAAWYG--ALSQREQEILRLLCSGASNREI 850

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +  L +S NTV  ++ ++  K   K R+ AI  A
Sbjct: 851 SEKLFLSENTVKFHLKNVYLKLDVKNRAQAILKA 884


>gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 233

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 18/181 (9%)

Query: 83  PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLP-----ENITPPAGMDNRYCSLT 134
           P  ++  + + E D Y     +   P     PV          + I       + Y    
Sbjct: 51  PDVIISDIMMPEVDGYQFLEKLRDDPRFQSIPVVFLTARGMTSDRIKGYNAGCDAYLPKP 110

Query: 135 FDVARIRIGLMLLFPKGRI-----ILRDRLWEIG-----LLAAYQANMFKSYDVHWGKDF 184
           FD   +   +  L  + ++         +L EI      L                    
Sbjct: 111 FDPEELEAIVNNLLERRKVNGKAGSDSAKLEEIAQEIRELKEQLGQQQNNLTTTPPPIKI 170

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ 
Sbjct: 171 DLTPREQSVLDLVAEGLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHG 230

Query: 245 I 245
           +
Sbjct: 231 L 231


>gi|227506297|ref|ZP_03936346.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197109|gb|EEI77157.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 205

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 20/140 (14%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +    +   +          D    +L   V     G   L P+   +L +R+       
Sbjct: 86  DTQSDIVSAVEAGALGYLLKDAPEQALHDAVLATAAGKRTLAPEVAALLAERITRP---- 141

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                           +  L+ RE+E L  ++ GK++ E+A  L IS  TV  ++  I +
Sbjct: 142 ----------------EVALSSRELEILEALATGKSNKELAQRLFISEATVKTHLIHIYQ 185

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    TR+ A+  A    ++
Sbjct: 186 KLGVDTRTAAVTVARERKLI 205


>gi|134098945|ref|YP_001104606.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911568|emb|CAM01681.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 227

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R I      E    +   A M  S +    +  ELT RE+  L  ++ G ++ +I   L 
Sbjct: 134 RAIRAVARGESAFDSRSAAAMVHSMNNRSSEP-ELTERELGVLRLLAAGSSNRQIGGQLY 192

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  T   ++ +IMRK    TR+ A+  A +  ++
Sbjct: 193 ISETTAKFHVRNIMRKLDVSTRAEAVYEASKRGLI 227


>gi|160898821|ref|YP_001564403.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160364405|gb|ABX36018.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 259

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+ +A    +
Sbjct: 199 LSTREREVLRMVASGYTSAEIGSRLMISAMTVNTHIKNIYRKLQVRTRAQAVRFASLRGL 258


>gi|29831078|ref|NP_825712.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608192|dbj|BAC72247.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 224

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 5/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143
           +R   L        +     ++   V  T   +      +    + +        ++   
Sbjct: 59  IRMPELGGIQATGRIAVDFPQVKVLVLTTFDLDEHVYDALRAGASGFLLKDASADQLAEA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++         L+A +             +  ELT RE E L  I++G ++
Sbjct: 119 VRVVAAGDALLAPGITRR--LIAEFSRLDTTPRAPLKVRVGELTERETEVLALIAQGMSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  ++  I+ K + + R+ A  +A  + +V
Sbjct: 177 AEIADRLVVAEQTVKTHVGRILVKLSLRDRTQAAVFAYESGLV 219


>gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 215

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 78/197 (39%), Gaps = 16/197 (8%)

Query: 54  EYVGASHFLLVRWDLFQE------QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           +Y+    + ++  +  +E      +++  ++  D     +    L +  +     +    
Sbjct: 27  DYLEFRGYQVITAENGREALELLEEQIPDLIICDVMMPQMNGYNLVQHIRENLATEWVPV 86

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           LF      + + +       + Y    F+   +   +     +             L+  
Sbjct: 87  LFLSAKGQIQDRVKGLNTGADVYIVKPFEPEELVAQVESSLKQASR----------LIKH 136

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           + ++      +   ++ ELT RE++ +  +++G  + +IA I+ +S+ T+ +++++++ K
Sbjct: 137 HNSSFSDRPTIKVRRNVELTPRELKVVKLVAQGMANRDIAEIMEVSQRTIESHVSNMLGK 196

Query: 228 TATKTRSGAIAYAVRNN 244
           T    R+    +A+ + 
Sbjct: 197 TGLHNRTELARWAIESK 213


>gi|328884518|emb|CCA57757.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 236

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +           L
Sbjct: 101 RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSIFRVQEGDAVFSP-------RL 153

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV +++++
Sbjct: 154 AGFVLDAFASTDAPPVDEDMDRLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSA 213

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK     R     +A    +V
Sbjct: 214 VLRKLQLSNRHELTRWATARRLV 236


>gi|307327120|ref|ZP_07606309.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887201|gb|EFN18198.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 236

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D R   L   V  +  G  LL P     L ++             
Sbjct: 90  VYEALHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPSVARRLVEQYTRATA------- 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  D        LT RE E L  ++ G ++ EIA  L +S +TV  ++ +++ K   +
Sbjct: 143 RPRRPDPRLDM---LTARERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLR 199

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    ++
Sbjct: 200 DRIQAVICAYETGLI 214


>gi|296268635|ref|YP_003651267.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091422|gb|ADG87374.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 212

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 5/141 (3%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +   G  +   RL    +L
Sbjct: 77  RFLALSVSDAAEDVIGVIRGGARGYVTKTISGPELTDAIHRVA-DGDAVFSPRLAGF-VL 134

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ +      D        LT RE E L  I+ G    EIA  L IS  TV  +++S++
Sbjct: 135 DAFASTPAPPIDPELD---SLTQREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVL 191

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R     +A    +V
Sbjct: 192 RKLQLSNRHELSRWASARRLV 212


>gi|117925383|ref|YP_866000.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117609139|gb|ABK44594.1| two component transcriptional regulator, LuxR family [Magnetococcus
           sp. MC-1]
          Length = 206

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 91  ALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLL 147
            L+  D    V++  RPT L     H  P             Y       + +   ++ +
Sbjct: 59  GLNGLDVVKRVVEEKRPTRLLLLTMHDDPTLAIKAEQAGALGYVVKDNAFSELLDAILAV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R +               A      +       +L+ RE E +  +++G+T+ EIA
Sbjct: 119 AAGKRFVS-----------EVVAEKVNELERLDDLPVQLSPREKEVVRLVADGQTNKEIA 167

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             LGIS  TV+ +   +MRK    T +  + YA+R  +V
Sbjct: 168 RSLGISPKTVDTHRTRLMRKLNLHTTADVVRYAMRMGLV 206


>gi|333027751|ref|ZP_08455815.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332747603|gb|EGJ78044.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 216

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R  +G  +  P    ++      +G     
Sbjct: 82  HADVLEAVKSGATGYLVKSASTEELIEAVRRTAVGDAVFTPGLAGLV------LGEYRRL 135

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A           +   LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 136 AAEPEPKTSGGGPETPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 195

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 196 QLHNRVELVRYAIEQGL 212


>gi|113955465|ref|YP_731403.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113882816|gb|ABI47774.1| possible DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 243

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 10/155 (6%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           +    + +  L+    +  P+  T+ + I  P    +  CS         +G+  +    
Sbjct: 86  VRRAKQDHPTLKALLLVQRPILRTILQAIDAPC---DGLCS------HQNVGMGGVSAAL 136

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             +  D ++   ++A       +          ELT +E + L  +  G ++ EIA  L 
Sbjct: 137 TAMESDGMYHDSVIA-DVLRHGRLGRALGSIPPELTLKEEDVLRGLCRGMSNQEIADSLV 195

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S +TV ++IAS++RK     R+ A+  A +  ++
Sbjct: 196 VSIDTVKSHIASLLRKLQANNRTHAVVVAFQQGLI 230


>gi|298246666|ref|ZP_06970471.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297549325|gb|EFH83191.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1067

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 126  MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDF 184
            +D     LT  + R+R  L             R L  + LL   +  M            
Sbjct: 947  LDEGAPLLTL-LYRLRDELRKQRTTENPAPASRYLDRLILLCKQEQQMGVPSGEQAELVE 1005

Query: 185  ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L+ RE E L  ISEG+++ EIA  L I+ +TV ++I +I  K   K+R+ A+  A R N
Sbjct: 1006 SLSERECEVLRHISEGRSNREIARQLVIALSTVKSHIRAIYAKLGVKSRTQALIQARRLN 1065

Query: 245  IV 246
            ++
Sbjct: 1066 LL 1067


>gi|50084356|ref|YP_045866.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49530332|emb|CAG68044.1| putative transcriptional regulator, luxR family [Acinetobacter sp.
           ADP1]
          Length = 246

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 85/235 (36%), Gaps = 23/235 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW-DLFQEQKLDSI--VSSDWPFDLV 87
             L ++            +    + +     ++       +E+ +D +  V  +W     
Sbjct: 14  QTLRQIRQASKIEDIFDVVVEFAQNIDFDRLIICSIAPHGKEELIDEVFFVYGNW----T 69

Query: 88  RCMALSEKDKYYNVLQRPTELFC---PVF--HTLPENITPPAGMDNRYCSLTFDVARIRI 142
               + E++KY         +F    P F   T  +N +       +  S   + + +++
Sbjct: 70  DRTNIEERNKYLRNCPITRHIFDYDEPFFWTKTFNKNNSKETYRVIKNISERGEESGVQV 129

Query: 143 GLMLLFPKGRIIL-RDRLWEIGL-----LAAYQANMFKSYDVHWG-----KDFELTGREV 191
            +         I    +L ++G      L +     F+            ++  LT RE 
Sbjct: 130 PIFGRTGLEGAISFAGKLSDLGADFRFILQSVCVTAFREIQSKRSLNLLRENSVLTQREK 189

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W + G+   EIA IL IS  TV N++ SI +K   K+   AIA A+    +
Sbjct: 190 EILKWTAVGRKQSEIAEILKISERTVENHLRSIRKKLEVKSTGQAIASALLKGEI 244


>gi|220916020|ref|YP_002491324.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953874|gb|ACL64258.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 208

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++EG  +  IA  LGIS +T   ++ +I+ K    +R+ AI  A R  
Sbjct: 145 PLTPREREVLALVAEGLGNKAIAGRLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLG 204

Query: 245 IV 246
           +V
Sbjct: 205 LV 206


>gi|298244504|ref|ZP_06968310.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551985|gb|EFH85850.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 232

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 7/187 (3%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPT-ELFCPVFHTLPENITPP 123
           D    +    ++    P  ++  + +   D       ++R + ++   +  T  E+    
Sbjct: 36  DAADGETALRLMEELQPDVVLMDLRMPSMDGITAIEQIRRCSPQVAILILTTYNEDDLMI 95

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM----FKSYDVH 179
            G+    C       R+   L  +    R  +  +   +  L +Y         ++ +  
Sbjct: 96  RGLQAGACGYLLKDIRLDTLLNAIRAAARGEILMQSDIMARLLSYTTKSAPFEPRASNQS 155

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE E L  ++ G  S +IA  LGI+  TV  Y+ SI  K    +R+ AI  
Sbjct: 156 HQSSIDLTEREREVLIAVARGDRSKDIARHLGIAERTVRAYLTSIYTKLNVTSRASAITV 215

Query: 240 AVRNNIV 246
           A+R  I+
Sbjct: 216 AIRYGIL 222


>gi|239817207|ref|YP_002946117.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803784|gb|ACS20851.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 356

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L W+ +GKT+ +I  ILG S  T   ++  +  K   +TR+ A   A++ 
Sbjct: 287 LKLTAREAEVLYWVVKGKTNKDIGEILGSSPATAKKHLERVYVKLGVETRTAAAGVAIKR 346


>gi|94263624|ref|ZP_01287434.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93456044|gb|EAT06195.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 43/112 (38%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L  DV    +  M        I       I L    +              + LT RE E
Sbjct: 102 LQHDVDGYLLKTMPALKLVEAISDALTGAIVLPTGLKRQTPAPLQPSPENQYGLTPRERE 161

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L W+SEGK++ EI VI  IS NTV +++  +M K     R      AV + 
Sbjct: 162 ILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213


>gi|56718415|gb|AAW27922.1| SplR [Serratia plymuthica]
          Length = 249

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENITP----PAGMDNRYCSL 133
           PF     + L    K+  +     +      F  V H    N+       A         
Sbjct: 79  PFAWDENITLMSDLKFTKIFSLSKQYNIINGFTFVLHDHMNNLALLSVIIASNGQEELEK 138

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                R  + ++L+       + ++++    LA   ++  + Y     K    T RE E 
Sbjct: 139 RLSSERGAMQMLLID------INEQMYR---LAGAASSSNQKYHTDADKPI-FTPRENEV 188

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W S GKT  EIA I GIS +TV  ++ +I+ K        AI   V   ++
Sbjct: 189 LYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241


>gi|302525783|ref|ZP_07278125.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434678|gb|EFL06494.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 221

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               EL+ REVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A
Sbjct: 155 NTPRELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALA 214

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 215 MRAGVI 220


>gi|296447080|ref|ZP_06889013.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
 gi|296255425|gb|EFH02519.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
          Length = 306

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL         S +      F LT RE E ++WI+ GK++ +IA IL IS  TV+ ++  
Sbjct: 220 LLFRLSERHVVSDEAFLVGKFALTSREAEVVSWIARGKSNVDIAEILCISPRTVHKHLER 279

Query: 224 IMRKTATKTRSGAIAYAVR 242
           I  K    +RS A + A++
Sbjct: 280 IFIKLGVDSRSSATSVALQ 298


>gi|258516415|ref|YP_003192637.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780120|gb|ACV64014.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 223

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 43/76 (56%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N+ K  +        L+ RE+E L  +S+  ++ EIA +L IS  TV  ++++I+RK   
Sbjct: 144 NIHKMKNSVVESCENLSKREMEILKLMSQNHSNTEIAGMLYISLPTVKTHVSNILRKLGQ 203

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+ AI Y++   ++
Sbjct: 204 QNRAQAILYSIATGLI 219


>gi|126348513|emb|CAJ90237.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 220

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 4/194 (2%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +        L ++ + D +V+ D    L+  +  +       V   P  L    
Sbjct: 28  IEVVGEAADGAAVIPLVRQVRPD-VVAMDVRMPLLDGIEATRALLR-TVTDPPKILVVTT 85

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F              + +       A I   + L+     ++    +  +   A Y    
Sbjct: 86  FENDEYVYEALRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRRLA--ARYGDGG 143

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE E L  ++ G ++ EIA  L +   TV +++++++ K   + 
Sbjct: 144 GDRAARAESTRARLTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARD 203

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+  A  +  V
Sbjct: 204 RTQAVITAYESGFV 217


>gi|326331408|ref|ZP_08197698.1| two component transcriptional regulator, LuxR family
           [Nocardioidaceae bacterium Broad-1]
 gi|325950664|gb|EGD42714.1| two component transcriptional regulator, LuxR family
           [Nocardioidaceae bacterium Broad-1]
          Length = 222

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 84/225 (37%), Gaps = 11/225 (4%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSS 80
            + +D + R+  +D      M +  +       E VG +        + + +    +V  
Sbjct: 1   MSSTDQMIRVALVDDQPLVRMGLATMIGAEPDLEVVGEASDGSAALPMLR-RTHPDVVLC 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           D    ++  + + E+      LQ    +    F              + +     +   +
Sbjct: 60  DIRMPVLDGLGMLEQVTRDASLQDVRVVMLTTFELDEYVFEALRLGASGFLLKDAEPVAL 119

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              + ++   G ++       +  +  + ++   +       D  LT RE E + W++ G
Sbjct: 120 LDAIRVVADGGSLLAPTVTRRV--IEEFGSSRRAANPHPRLGD--LTEREREMVAWVATG 175

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +++ EIA  L +S +TV  +++  M K   + R+  + +A+ + +
Sbjct: 176 RSNAEIAAELVVSPDTVRTHVSRAMVKLHARDRAQLVVFAIESGL 220


>gi|291617509|ref|YP_003520251.1| EanR [Pantoea ananatis LMG 20103]
 gi|151175682|dbj|BAF69065.1| AHL-dependent transcriptional regulator [Pantoea ananatis]
 gi|291152539|gb|ADD77123.1| EanR [Pantoea ananatis LMG 20103]
 gi|327393946|dbj|BAK11368.1| transcriptional activator protein EanR [Pantoea ananatis AJ13355]
          Length = 249

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 25/197 (12%)

Query: 63  LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYY---------NVLQRPTELF 109
           L R + FQ    D ++ + +    PF     + L    ++          N++   T + 
Sbjct: 57  LYRANNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLRFTKIFSLSKQYNIVNGFTYVL 114

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
               + L        G D           +  + ++L+         ++++    LA  +
Sbjct: 115 HDHMNNLALLSVIIKGNDQAALEQRLASEQGTMQMLLID------FNEQMYR---LAGAE 165

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A    + + +  K    + RE E L W S GKT  EIA I GIS +TV  +I +++ K  
Sbjct: 166 AERAPTVNQNADKTI-FSSRENEVLYWASMGKTYSEIAAITGISVSTVKFHIKNVVVKLG 224

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI   V  +++
Sbjct: 225 VSNARQAIRLGVELDLI 241


>gi|94269857|ref|ZP_01291582.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93451041|gb|EAT02000.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 43/112 (38%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L  DV    +  M        I       I L    +              + LT RE E
Sbjct: 102 LQHDVDGYLLKTMPALKLVEAISDALTGAIVLPTGLKRQTPAPLQPSPENQYGLTPRERE 161

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L W+SEGK++ EI VI  IS NTV +++  +M K     R      AV + 
Sbjct: 162 ILHWLSEGKSNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESG 213


>gi|331695587|ref|YP_004331826.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950276|gb|AEA23973.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 219

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 8/161 (4%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +  +  D    VL    E    V   +    T           L   V R   G 
Sbjct: 64  DAIRGIVDALPDTRILVLSASGE-HTDVLEAVKAGATGYLVKSAGADELLDAVRRTADGY 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +  P    ++   L E   LA   A               LT RE   L  +++G T+ 
Sbjct: 123 PVFTPGLAGLV---LGEYRRLADEPARRPAGDPAVPA----LTERETGVLRLVAKGLTAR 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I   LG+S  TV +++ + +RK     R+  + YA+   +
Sbjct: 176 AIGERLGLSHRTVESHVQNTLRKLQLHNRAQLVRYAIEQGL 216


>gi|328543741|ref|YP_004303850.1| Two component transcriptional regulator, LuxR family [polymorphum
           gilvum SL003B-26A1]
 gi|326413485|gb|ADZ70548.1| Two component transcriptional regulator, LuxR family [Polymorphum
           gilvum SL003B-26A1]
          Length = 232

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 12/152 (7%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
              +R  E+   V   + +  +  + +      Y         I   +  L      I  
Sbjct: 86  EARRRLPEVDIMVVSVMADEASVLSAIRVGAMGYILKDAFPNDIAAAVHDLVRGHSPISA 145

Query: 157 DRLWEIGLLAAYQAN--MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                   +A Y        + D        LT RE + L  I++G    EIA  LGIS 
Sbjct: 146 S-------IARYIVRNAQLPAGDEPCEPAIRLTPREADILWGIAKGYRYAEIAAQLGISP 198

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  YI +I RK     R  A+  AV+  ++
Sbjct: 199 QTVTGYIKTIYRKLHVTNRGEAVFEAVQQGLI 230


>gi|312140502|ref|YP_004007838.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311889841|emb|CBH49158.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 220

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  +  +     ++ P  +       + E +    G+      L  
Sbjct: 50  DVVLMDVRMPEMNGLDAAR-EILAAAMEPPVRVLMLTTFDIDEYVYEALGIGASGFLLKD 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A   I  + +   G  +L   +     L         +      +   LT RE E L 
Sbjct: 109 APAEELIRAVRVVAAGEALLAPSV--TKRLIEDVTRRRAAPRRRDRQLETLTPREREVLE 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L ++  TV  ++  ++ K + + R+ A+  A  + +V
Sbjct: 167 LIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYESGLV 217


>gi|221068174|ref|ZP_03544279.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220713197|gb|EED68565.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 253

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 14/183 (7%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +R   F    LD  + +D   +L+  M          V+    E    V H      T  
Sbjct: 81  IRQHEFDVMLLDLKLGADNGLELIEVMKSHRPQAEVIVVSV-VETEEQVLHAFELGATGY 139

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              ++ + +    V ++  G   + P     L  R            +   +     G D
Sbjct: 140 LVKNSWFGNYPQAVLQVVNGGASITPSLARRLLQR-----------CDKRPASGAVPGSD 188

Query: 184 FE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   ++R+ A+ +A 
Sbjct: 189 MSDRLSSRECEVLRMVASGNTSAEIGASLEISTMTVNTHIKNIYRKLQVRSRAQAVRFAY 248

Query: 242 RNN 244
              
Sbjct: 249 LRG 251


>gi|297194807|ref|ZP_06912205.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720731|gb|EDY64639.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 8/177 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        ++ + +      L     +    F      +       + +     
Sbjct: 50  DVVLMDIRMPGTDGLSATREITADPELSHVRIVMLTTFEVDEYVVQSLRAGASGFLGKGA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW------GKDFELTGR 189
           +   +   + +      ++        GL+A + A    + D          +   LT R
Sbjct: 110 EPDELLNAIRVAAAGEALLSPAATK--GLIATFLAQGGAADDDGLHAGDLSERLSALTVR 167

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 168 EREVLVLVAGGHSNDEIATRLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 224


>gi|153006507|ref|YP_001380832.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030080|gb|ABS27848.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
          Length = 541

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + L     LA   A   +S          LT RE++ L  ++ G+T+  IA  L +S  T
Sbjct: 455 EGLGASPELARLDAIRERSTPAGRS---PLTPRELQVLRLVAAGRTNKAIAAELFLSERT 511

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +I++I RK    +R+ A A+A    ++
Sbjct: 512 IDRHISNIFRKLNVPSRAAATAHAYDRKLL 541


>gi|113953858|ref|YP_731807.1| LuxR family transcriptional regulator [Synechococcus sp. CC9311]
 gi|113881209|gb|ABI46167.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CC9311]
          Length = 83

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 40/63 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ +
Sbjct: 3   ISLSSREIEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDH 62

Query: 244 NIV 246
             +
Sbjct: 63  GKI 65


>gi|148657384|ref|YP_001277589.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148569494|gb|ABQ91639.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 214

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 17/202 (8%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQR 104
            +  L E     + + V       + L +++ S+ P  +V  +A+  +D       + +R
Sbjct: 22  GLRGLLER---ENDMTVVATATDGESLLALIESERPDVVVMDLAMPTRDGLSCLREIRRR 78

Query: 105 PTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              +   +     +     +  + +    +L  D  R  I  +     G+I+    + + 
Sbjct: 79  GMPVKIVILTAFGDGGALQSAWELQADGFALKTDPPRQTIATIRNVAHGQIVFPRVVRQA 138

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                       S   H      LT RE + L  ++EG  + +IA  L +  +TV  ++ 
Sbjct: 139 AD---------PSQTQHTSLLARLTQRERDVLRLLAEGMPNAQIAERLVVQESTVKYHLQ 189

Query: 223 SIMRKTATKTRSGAIAYAVRNN 244
           +I +K     R+ A     R  
Sbjct: 190 NIFQKLGVTNRTEAAQVYYREG 211


>gi|94500934|ref|ZP_01307459.1| probable transcriptional regulator [Oceanobacter sp. RED65]
 gi|94426874|gb|EAT11857.1| probable transcriptional regulator [Oceanobacter sp. RED65]
          Length = 897

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVI 209
           L D+      + A   N+  + D    K+F      L+ RE+  L  I+EG ++ EIA  
Sbjct: 801 LPDQYKHKPFVQAILKNIELTEDASPNKEFAKMRLVLSQREMAVLKLIAEGLSNQEIAER 860

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS +TV  +   I  K   K+R+ AI  A    I+
Sbjct: 861 LFISLHTVKTHARRINGKLDVKSRTQAILKAKEVGIL 897


>gi|147669585|ref|YP_001214403.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|146270533|gb|ABQ17525.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 232

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D+    L   V     G   L P     L ++  E  +    +A 
Sbjct: 90  VHEALRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSP----PLSEKAIEAYMEKTAEAT 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
               Y+        LT RE E L  +S+G T  EIA  L IS  TV  + A++MRK   +
Sbjct: 146 SLDPYET-------LTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLR 198

Query: 232 TRSGAIAYAVRNNIV 246
            ++  + YA++  I+
Sbjct: 199 NQTQLLRYALQRGII 213


>gi|206563380|ref|YP_002234143.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039420|emb|CAR55386.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 215

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE+E L  ++EG ++  IA  LGI+  TV  ++ ++M K     R+ A+
Sbjct: 143 PPRNPFAALTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAV 202

Query: 238 AYAVRNNI 245
           A A R  +
Sbjct: 203 ALAWREGL 210


>gi|75906884|ref|YP_321180.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75700609|gb|ABA20285.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 239

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K     R+ A   A+R+
Sbjct: 176 YTLTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRS 235

Query: 244 NIV 246
            +V
Sbjct: 236 GLV 238


>gi|302525544|ref|ZP_07277886.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434439|gb|EFL06255.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 222

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 12/176 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGMD---NR 129
            +V+   P  L+  + +  +D       V  +  +    V  T  ++ +  A +      
Sbjct: 51  ELVAEHQPDVLLVDLRMPNRDGVETTELVRAQHPKTEVVVLTTYADDDSLLAALKAGARG 110

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + +   D   I   L         +  +    +   A  +A       V   +   LT R
Sbjct: 111 FLTKDTDAEAIARALRSAAAGQSTVDGELQRRLVAAATSRAP------VRTKELEGLTAR 164

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EVE L  I+ G ++ EIA  L +S  TV  ++  +  K   + R+ A+A+A R  I
Sbjct: 165 EVEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFSKAGLRDRAQAVAFAYRAGI 220


>gi|37519813|ref|NP_923190.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210804|dbj|BAC88185.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 232

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAA--YQANMFKSYDVHWGKDFE---LTGREV 191
           V +   G   + P    I+ + +    + AA   +  + ++ D    +  E   LT RE+
Sbjct: 117 VEKTHEGTSFIDPSVAGIVLNEVRSRSVHAAPGTRQTVIQAADPELAQILEASPLTEREL 176

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I +G +++ IA  L I+  TV  ++ +I+ K     R+ A   A+R+ +V
Sbjct: 177 EVLQLIVQGHSNEGIAQQLYITVGTVKTHVRNILSKLCADDRTQAAVLALRSGLV 231


>gi|315502094|ref|YP_004080981.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315408713|gb|ADU06830.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 216

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  + +    +    P  L    F                +     
Sbjct: 50  RVVLMDVRMPAIDGIQATRRLLAASA-DPPRVLVVTTFANDEYVYEALRAGAAGFLLKRA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A +   + ++     ++    + ++        + +   D    +   LT RE E L 
Sbjct: 109 RPAEVVQAIRVVAAGDSLLFPAAIRQL-------VDTYGRRDGDRLRAARLTEREAEVLR 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 162 LMAAGLSNPEIAARLVVGVETVKTHVGNVLAKLGVRDRTQAVVAAYESGFV 212


>gi|257057781|ref|YP_003135613.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587653|gb|ACU98786.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 226

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 12/176 (6%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
             +V    P  ++  + +   D          E    +  + P+         +    + 
Sbjct: 55  RHVVGDPMPHVVLMDLQMPRLDG--------IEATRSILASYPDVKVVVLTSFSEAERVH 106

Query: 135 FDVARIRIGLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             ++    G +L   +       +      E+ L AA    + +           LT RE
Sbjct: 107 AALSAGAAGYVLKDAEPEEVATAVRAAVKGEVHLDAAVARLLARRMASPQVGVTSLTARE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  + +G ++ EIA  L IS  T   ++++++ K    +R+ A   A+R  +V
Sbjct: 167 RDILVLVGQGLSNREIADRLVISERTARTHVSNVLSKLQLSSRTQAALLAIREGLV 222


>gi|325675879|ref|ZP_08155563.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|325553850|gb|EGD23528.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 222

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  +  +     ++ P  +       + E +    G+      L  
Sbjct: 52  DVVLMDVRMPEMNGLDAAR-EILAAAMEPPVRVLMLTTFDIDEYVYEALGIGASGFLLKD 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A   I  + +   G  +L   +     L         +      +   LT RE E L 
Sbjct: 111 APAEELIRAVRVVAAGEALLAPSV--TKRLIEDVTRRRAAPRRRDRQLETLTPREREVLE 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L ++  TV  ++  ++ K + + R+ A+  A  + +V
Sbjct: 169 LIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYESGLV 219


>gi|258592172|emb|CBE68481.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 367

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVILG 211
           +RL    L  A +  +         +       +LT RE E L W++ GKT+ E+A ILG
Sbjct: 271 ERLVIRHLCEADRCILLMEQQPVSVQPVAFKLSDLTRREAEVLLWVAHGKTNVEVAEILG 330

Query: 212 ISRNTVNNYIASIMRKTATKTRSGA----IAYAVRNN 244
           +S  TV  ++  I +K   +TR  A       A R  
Sbjct: 331 LSSRTVQKHLEHIFKKLGVETRVAATRALAVGAFRKR 367


>gi|256392814|ref|YP_003114378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256359040|gb|ACU72537.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 525

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  ++ G ++ EIA  L ISR TV++++  I  KT T  R+ A  YAVR+ +
Sbjct: 462 LTRREVQVLRLLARGLSNGEIAEQLVISRKTVSHHVEHIYAKTGTANRAMAGLYAVRHGL 521


>gi|317492747|ref|ZP_07951172.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919270|gb|EFV40604.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 210

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 17/200 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           ++V       + +  ++  D  FD+V   +   +        +P   L       L    
Sbjct: 9   MIVDDHPLMRRGIRQLLELDPTFDVVAEASSGSEAIALASRAQPDLILLDLNMKGLSGLD 68

Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-- 174
           T  A    G+D R   LT   +R  +  ++       +L+D   EI L   +QA   K  
Sbjct: 69  TLKALRNEGVDARIIILTVSDSRSDVYALVDAGADGYLLKDSEPEILLSQIHQAASGKNV 128

Query: 175 ----------SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                     S         +LT RE++ L  ++ G ++ +IA  L IS  TV  +I ++
Sbjct: 129 FSDTISEYLSSRTELTDPFADLTERELDVLQEVARGLSNKQIASQLHISEETVKVHIRNL 188

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           +RK   ++R  A    + N 
Sbjct: 189 LRKLDVRSRVAATVLYLENK 208


>gi|294664443|ref|ZP_06729796.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605777|gb|EFF49075.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 213

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE E L  ++ G ++ +I   L IS  TV  ++ +I+ K   + R+ A+  A+R
Sbjct: 146 DDALSARETEVLNLVATGCSNKQIGSALRISEETVKAHMKNILGKLGVRDRTHAVTVALR 205

Query: 243 NNIV 246
             I+
Sbjct: 206 RGIL 209


>gi|297195058|ref|ZP_06912456.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721552|gb|EDY65460.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 223

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 8/170 (4%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFD 136
           P  +V  + +   D       +   P+     V  T  ++      +    + +     D
Sbjct: 52  PDVVVMDIRMPGMDGIEATGRITAGPSTARVLVLTTFDDDEYVYGALRAGASGFLVKDMD 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +  I   + ++     +I         L+  + A               +T RE E LT 
Sbjct: 112 LDDILAAVRVVAAGDALIAPSVTRR--LIEEFAARPKPPATPPHPAIDGVTDREREVLTL 169

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I  G ++ EIA  L IS  T   ++  +  K A + R   +  A    +V
Sbjct: 170 IGRGLSNGEIADRLCISPATAKAHVGRLFTKLAARDRVQLVIIAYELGLV 219


>gi|220909919|ref|YP_002485230.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866530|gb|ACL46869.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 18/176 (10%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRY 130
            S  P  +V  + L   D      Q   +   P  H        T  E I   +   + Y
Sbjct: 52  LSLKPDLVVMDIGLPGLDGIAATQQ--IKTALPEVHVVMLTSHTTETEVIAALSSGADAY 109

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
           C     V R+   +         +      ++      +     S +   G   +L+ RE
Sbjct: 110 CIKGASVDRLLSAIAAAQEGATYLDPQIARQV-----IEHLKPPSNNNMLG---QLSQRE 161

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ L  + EG ++ EIA  L +S NT+  ++  IM K A   R  A   A+R  +V
Sbjct: 162 LDVLKLMVEGYSNPEIATKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAGLV 217


>gi|154487087|ref|ZP_02028494.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis
           L2-32]
 gi|154084950|gb|EDN83995.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis
           L2-32]
          Length = 249

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ +        A 
Sbjct: 107 VMAAINAGASGFLLKDTEPETLLNSIRTVYQGNAIIAPSATKRLIEKMMDGDFAGTAAAA 166

Query: 172 MFKSYDVHWGKDF--------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              +                 ELT RE E L  I+ G ++ EIA  L IS  TV  ++A 
Sbjct: 167 PVSAMSASASTATMYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAH 226

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R  A+ +A  N++V
Sbjct: 227 ILSKINARDRVQAVVFAYENHLV 249


>gi|86358518|ref|YP_470410.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
 gi|86282620|gb|ABC91683.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
          Length = 260

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 19/234 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
                    +    +    +  L    G     + L +      +     V + +P   V
Sbjct: 27  DKFEPAFEQIKAATNVDAAIRILQAEYGLDFVTYHLAQTIAS--KIDSPFVRTTYPDAWV 84

Query: 88  RCMALSEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVA 138
               L+   K   ++++  E   P         PE           G+     S+     
Sbjct: 85  SRYLLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADK 144

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDF--ELTGREVE 192
             R  L+ L  +        L        +  A+  +    Y++H   D    L+ RE+E
Sbjct: 145 AQRRALLSLNARIPADEWSELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPTLSPREIE 204

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 205 CLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 258


>gi|260430667|ref|ZP_05784639.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418108|gb|EEX11366.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157]
          Length = 204

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 19/175 (10%)

Query: 78  VSSDWPFDLVR-CMALSEKDKYYNV-----LQRPTELFCPVFHTLPENITPPA-GMDNRY 130
           + SD PFDLV   + +   +    +     + R   +         +            +
Sbjct: 41  IESDGPFDLVLLDLNMPGMNGLSGLETCIGMDRARHVALFTGDASRDLAERALELGAAGF 100

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T     +   +  +    + +       +G ++A Q       D H     +LT RE
Sbjct: 101 VPKTLPAKSLVNAIRFMAMGEQYLP------VGFMSAEQ-----PNDTHPMAK-KLTERE 148

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  ++EGK++ EIA  L +S  T+  ++ ++ RK     R+ A   A    +
Sbjct: 149 RQVLKGLTEGKSNKEIARDLDLSEPTIKLHVKTLYRKVGVSNRTQAAMAAREAGL 203


>gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
 gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
          Length = 245

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 16/189 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +Q L  +V SD     +    L +K +    L     +F        +         + Y
Sbjct: 59  QQMLPDVVISDVMMPRLDGYGLLQKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 118

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---------AYQANMFKSYD 177
               FD   +   +  +  + + +L++       ++G +A           QA    S +
Sbjct: 119 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSTE 178

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                    T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  +
Sbjct: 179 PVV---HSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELV 235

Query: 238 AYAVRNNIV 246
            YA+ + +V
Sbjct: 236 RYALEHRLV 244


>gi|320160834|ref|YP_004174058.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994687|dbj|BAJ63458.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 222

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 4/160 (2%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +R    S  +    +  R  +    +  +  E+    + + +               +  
Sbjct: 62  IRLPGASGIEACEEITTRFPDTRVVMLTSYAEDEMLFSAIRSGASGYILKQIGGEDLIRA 121

Query: 147 LFPKGRIILRDRLWEIGLLAA-YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L   GR    + L +  +    +Q       +        L+ +E   L  +SEGKT+ E
Sbjct: 122 LESVGRG---EALLDPAVTQRVFQEVRRAVKEEEASAFANLSQQEKHVLLLVSEGKTNRE 178

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L +   TV NY++SI+ K     R+ A AYAV +N+
Sbjct: 179 IAKALFLGEGTVRNYVSSILSKLGVSNRAEAAAYAVEHNL 218


>gi|311031073|ref|ZP_07709163.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 213

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  ELT RE   L  + EGK + EIA  L +S  TV N++  I++K   + R+    +A+
Sbjct: 149 EMVELTSRERSILQLVGEGKNNQEIAEALYLSIGTVKNHVTVILQKLGLRDRTQLAIFAI 208

Query: 242 RNNIV 246
           RN +V
Sbjct: 209 RNGVV 213


>gi|320011831|gb|ADW06681.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 520

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 3/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +    F          +   + +         +   +  +     ++         L
Sbjct: 370 PRVVILTTFDLDRYVYAALSAGASGFLLKDVTPEHLASAVRTVRTGDALLAPAITRR--L 427

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +  +   + D+H      LT RE+E L  ++ G ++ E+A  L ++  TV  ++A +
Sbjct: 428 VQRFARHGGDTADLHRDL-ASLTPRELEVLGLLARGLSNAELAARLHLAETTVKTHVARV 486

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+  A    +V
Sbjct: 487 LAKLGLRDRVQAVIVAYETGLV 508


>gi|237846558|gb|ACR22887.1| SplR [Serratia plymuthica]
          Length = 249

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 25/197 (12%)

Query: 63  LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVF 113
           L R + FQ    D ++ + +    PF     + L    K+  +     +      F  V 
Sbjct: 57  LYRANNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLKFTKIFSLSKQYNTINGFTFVL 114

Query: 114 HTLPENITP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
           H    N+       A              R  + ++L+       + ++++    LA   
Sbjct: 115 HDHMNNLALLSVIIASNGQEELEKRLSSERGAMQMLLID------INEQMYR---LAGAA 165

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           ++  + Y     K    T RE E L W S GKT  EIA I GIS +TV  ++ +I+ K  
Sbjct: 166 SSSNQKYHTDADKPI-FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLG 224

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI   V   ++
Sbjct: 225 VSNARQAIRLGVELELI 241


>gi|225875065|ref|YP_002756524.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225792729|gb|ACO32819.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 213

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +     G ++       IL + +  +   + +                ELT RE E L 
Sbjct: 100 AIQAGARGYLIKDTTQEEIL-EAIAAVHAGSLHLPRHIAQRISERIGRQELTRRETEILE 158

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G T+ EI  + GIS NT  N++ SI++K     R+ A   A+   I+
Sbjct: 159 MLAKGLTNKEIGRVFGISENTARNHVNSIIQKLEVSDRTEAATTAILRGII 209


>gi|116329279|ref|YP_798999.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330114|ref|YP_799832.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116122023|gb|ABJ80066.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116123803|gb|ABJ75074.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 221

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 11/137 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L   I      D+    L   +  +  G   L P               L+ +  +
Sbjct: 92  VQKLLELGINGYVLKDDAGNDLLRAIEAVHKGETYLSPGITA---------HFLSGFVGS 142

Query: 172 MFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                +    K     L+ RE E L  ++EG +++ I  ILGIS  TV  + A+IM+K  
Sbjct: 143 GKPGEENQDAKKAFSVLSDREREILKLVAEGNSNESIGKILGISPATVKVHRANIMKKLN 202

Query: 230 TKTRSGAIAYAVRNNIV 246
               +  + YA+R  ++
Sbjct: 203 LHKVADLVMYAIRAGLI 219


>gi|72162677|ref|YP_290334.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916409|gb|AAZ56311.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 217

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 7/146 (4%)

Query: 99  YNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
            +V++   E    V  T  E+      +   G         F +  +   L  +      
Sbjct: 65  VSVVEELAEFTKVVMLTHTEDPQVIQTSLRRGASGYLVHGNFTLDELNRALREVVHGTGS 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
            L         L +       +          LT RE E L   + G ++ EIA  L +S
Sbjct: 125 PLSP--VAATALVSSLRAAPPTPVPVAPAALGLTEREAEVLEAAARGLSNAEIAKELFLS 182

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAY 239
             TV N+I  I RK   +TR+ AIA 
Sbjct: 183 EKTVKNHINRIFRKLGVRTRAAAIAR 208


>gi|298249257|ref|ZP_06973061.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547261|gb|EFH81128.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 9/180 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-----PVFHTLPENITPPAG 125
           E+    +V  D     +  +A +   K      R   L        +   L         
Sbjct: 52  ERTAPDVVLMDVRMPRMDGIAATRAFKERWPESRIVILTTFDDSELIHAGLQAGALGYVL 111

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
            D     L   +     G +LL P    I    +  +  +    A    +     G D  
Sbjct: 112 KDITAEQLATSIRAAAQGQVLLHPD---IASKVIASLSSVPTETAVTPATPPSIGGSDLA 168

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G ++ EI+  L I+  TV N++++I+ K   + R+ A   A    
Sbjct: 169 QLTEREREILALLAHGASNREISEALYITGGTVKNHLSNILGKLGVRDRTQAALKARELG 228


>gi|213970476|ref|ZP_03398604.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301383864|ref|ZP_07232282.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060596|ref|ZP_07252137.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134766|ref|ZP_07260756.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213924794|gb|EEB58361.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
          Length = 222

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144
            M +        +LQ+       V  T+ ++        +     Y         +  GL
Sbjct: 59  RMPVLNGLGAARILQQRMPGLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIDGL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         + A     M +           LT RE + L  ++ G ++ 
Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGASAPEALTPRERQVLGLVAGGFSNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|170781371|ref|YP_001709703.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155939|emb|CAQ01071.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 249

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG  + EIA  L +   TV  +++ ++ K   + R  A+ +A    I
Sbjct: 184 LTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYERGI 243

Query: 246 V 246
           V
Sbjct: 244 V 244


>gi|56798118|dbj|BAD82901.1| transcription factor [Pseudomonas sp. MT-1]
          Length = 218

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 12/132 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     L   +     G M L P+   +L + +            
Sbjct: 95  VLEALRNGADGYLLKDMDAEQLVEQIRLAATGRMALSPELTQVLAEAIR----------- 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +           LT RE E L  I++G+++  IA  LGI+  TV  ++ +++ K   +
Sbjct: 144 -VRPKPTGQVPFSSLTKREKEVLRLIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLR 202

Query: 232 TRSGAIAYAVRN 243
           +R  A  + + N
Sbjct: 203 SRVEAAVWVLEN 214


>gi|71733308|ref|YP_273861.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71553861|gb|AAZ33072.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320327729|gb|EFW83737.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 233

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           + +  ++ S++P   ++    S       +++       P F     N       D+   
Sbjct: 38  RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 97

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   + +     R+ E        L  +   + K
Sbjct: 98  RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 157

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H         +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   
Sbjct: 158 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 217

Query: 231 KTRSGAIAYAVRNNIV 246
           +T   A+  A+   +V
Sbjct: 218 RTAKQAVYKAINIGMV 233


>gi|328949883|ref|YP_004367218.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450207|gb|AEB11108.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 208

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 11/158 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +S  +    +  R  E+       H  PE +        +       V    +  +L  
Sbjct: 59  GMSGIETAKTLRTRAPEVRLVALSMHEDPEYVQSFFEAGGQGYVPKSAVEAELVDAVLAV 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +G      RL  +  +A   AN          ++ +LT RE+E +  I+EGKT  EIA 
Sbjct: 119 VRGEYYAPARL--LSRVAREMAN-------PHAREAKLTERELEVVRQIAEGKTYKEIAE 169

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LGIS  TV  Y      K   KTR+  + +A+   ++
Sbjct: 170 HLGISEKTVATYRERAAEKLGLKTRAELVRWALERGLL 207


>gi|291300074|ref|YP_003511352.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569294|gb|ADD42259.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 213

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 16/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +          D     L   V     G   L P     L DRL   G        
Sbjct: 91  VLPAMEAGAVGYLLKDTPRQDLYRAVRSAADGETALSPSVAARLVDRLRSPG-------- 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   L+ RE+E L+ ++ G ++  IA  L IS  TV  ++  I  K    
Sbjct: 143 --------PARSSALSAREIEVLSLVAAGNSNKAIAAALFISEATVKTHLLHIYGKLGVN 194

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+A    + ++
Sbjct: 195 DRAAAVAAGYDSGLL 209


>gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 244

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 82/215 (38%), Gaps = 22/215 (10%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           A+  Y     F +V      E+  +    S+ P  ++  + +   D +     + +    
Sbjct: 32  AVQAYFEDEGF-IVSTAADGEEGWEK-AQSEVPDVVLSDVMMPRVDGFGLLKLLREDERL 89

Query: 108 LFCPVFHTLPENITPP------AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW- 160
              PV     + +T        AG+D+ Y    FD   +   +  +  +   +L++    
Sbjct: 90  GGTPVIFLTAKGMTADRIAGFRAGVDD-YIPKPFDPDELVARVRNVVQRQERLLKEAARY 148

Query: 161 ---EIGLLAAYQANMFKSYDVHWGK------DFELTGREVECLTWISEGKTSDEIAVILG 211
              ++G +A     +        GK      +   T RE   L  ++EG  + EIA  L 
Sbjct: 149 ADTDLGQMAKQIGEIRTMLQGGAGKAAGQSVEHSFTPREASVLQLVAEGLMNKEIARQLE 208

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S   V  Y++ +  KT T +R+  + YA+ + +V
Sbjct: 209 TSIRNVEKYVSRLFAKTGTASRTELVRYALEHGLV 243


>gi|94971316|ref|YP_593364.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553366|gb|ABF43290.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 218

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y        ++   +  ++  G+ +    L ++      +    +  D         
Sbjct: 97  AAGYVLKDTPAPQLVTAVRDVYKGGKYLSSQVLGKL-----VEDFRARVRDAKLRPRIST 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG +  EIAV+LG+S  TV  +  ++MRK     ++  + YA++  I
Sbjct: 152 LTPREREILKLLAEGNSVKEIAVLLGLSVKTVEAHKFNLMRKLDIHNKAQLVTYAIQKKI 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|29832148|ref|NP_826782.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609266|dbj|BAC73317.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  +      + L     L    + T    +       + +     
Sbjct: 53  DVVVMDLRMPDLDGIDATRLIAADDDLAGVRVLVLTTYDTDEYIVEALRAGASGFLVKDT 112

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A +   +  +     ++         L+A              G +  L+GRE E LT
Sbjct: 113 KPAELLDAIRTVAAGEALLSPG--PTARLIARLLRTPVPPPAAAVGPEC-LSGREREVLT 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G  + EIA  LG+S  T   +++ IM K   + R+  +  A  + +V
Sbjct: 170 LVARGLNNTEIAESLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 220


>gi|304406658|ref|ZP_07388313.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344191|gb|EFM10030.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 222

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 6/161 (3%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL+  + +        +++R  +L   +  +  E+    A ++    S           
Sbjct: 62  MDLMMPI-MDGVQATAAIMERFPDLKIVMLTSFLEDDKVLAAVEAGAVSYVLKTVSAEEL 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L    + +          L               G D  LT RE E L  I++G  +
Sbjct: 121 IYALTGAVKGMPVMTSDVSQALTRGLRQR-----SAQGADEGLTEREKEVLLLIADGMAN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L IS  TV  ++++++ K   + R+    YA R  
Sbjct: 176 KEIAEELHISIKTVKTHVSNLLMKCELEDRTQLAVYAHRKG 216


>gi|113954826|ref|YP_730328.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113882177|gb|ABI47135.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 234

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE++ +  I  G  + EIA  L IS  TV ++++++++K   + R+ A  +A+ + 
Sbjct: 169 PLSERELDVIRCIIRGMRNIEIADALFISSETVKSHVSTVIQKLGVRDRTQAAVFAMTHG 228

Query: 245 IV 246
           ++
Sbjct: 229 LI 230


>gi|291299967|ref|YP_003511245.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569187|gb|ADD42152.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 214

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 10/171 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  + +      L  P  +    F              N +     
Sbjct: 50  DVVLMDVRMPNVDGIEATRQILRIPELS-PKIIVVTTFDNDDYVYEALRAGANGFLLKRT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +  G+ ++     ++    +  +        +  +S     G    LT RE E L 
Sbjct: 109 PPDDLLAGIRVVARGDALLFPAAVRRLAA-----GHTGRSTLDAAG----LTEREAEVLR 159

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +S  TV  ++A I+ K   + R+ A+  A     V
Sbjct: 160 LMARGLSNAEIAARLFLSAETVKTHVAKILAKLRVRDRTQAVIKAYEAGFV 210


>gi|170782478|ref|YP_001710811.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157047|emb|CAQ02220.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 212

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E LT ++EG T+ EIA  L +S +TV  ++  ++ K   + R  A+  A    
Sbjct: 147 PLTARELEVLTALAEGLTNQEIAGRLFLSESTVKTHVGRVLAKLEVRDRVQAVILAYDCG 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|256784749|ref|ZP_05523180.1| two-component response regulator [Streptomyces lividans TK24]
          Length = 216

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 9/177 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPA-GMDNR 129
            +V+   P  ++  + +   D      +       T++     +   E++ P        
Sbjct: 38  RVVAELAPDVVLMDLRMPRCDGVEATRRIRSEHPGTQVVVLTTYADDESLFPALHAGARG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +       I   +  +      +          L  + +               LT R
Sbjct: 98  YLTKDAGGDEIVRAVHSVLSGDAGLAPSIQRR---LLEWLSESEPRPTGPPEPPDGLTTR 154

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+EG T+ +IA  L +S  TV  +I ++  KT  K R+ A+ YA    +V
Sbjct: 155 ETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV 211


>gi|170782950|ref|YP_001711284.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157520|emb|CAQ02714.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 234

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 10/116 (8%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y S       +   L  +     +  +  L               S D   GK   +T 
Sbjct: 114 GYLSKALPARELVEALERIHAGEELFNQAPLRAASA---------PSLDW-PGKREGITD 163

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E L  I++GK++ E+A +  +S NTV +YI SI RK   ++R+ A+ + V + 
Sbjct: 164 RESEILALITQGKSNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWGVGHG 219


>gi|166366585|ref|YP_001658858.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166088958|dbj|BAG03666.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 237

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT RE E L  I  G ++ EIA  L I+  TV  ++ +++ K +   R+ A   A+
Sbjct: 172 ENAPLTAREREILDLIVAGCSNAEIAKRLYITIGTVKTHVRNVLNKLSVDDRTQAAVLAL 231

Query: 242 RNNIV 246
           R+ +V
Sbjct: 232 RSGLV 236


>gi|84496167|ref|ZP_00995021.1| putative two-component system regulator [Janibacter sp. HTCC2649]
 gi|84382935|gb|EAP98816.1| putative two-component system regulator [Janibacter sp. HTCC2649]
          Length = 232

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 37/87 (42%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L E   +AA       +         ELT RE E L  ++ G +  EIA  L +S  TV 
Sbjct: 137 LGEFRRMAADDGEAVAAPQTADRPIPELTDRETEVLRLVATGMSYKEIAAELFLSHRTVQ 196

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
           N++ + + K     R   + +A+   +
Sbjct: 197 NHVQNTLGKLHLHNRVELVRFALARGL 223


>gi|226365530|ref|YP_002783313.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244020|dbj|BAH54368.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 228

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R I      E    +   + + +S +        LT RE+E L  +++G ++ +I   L 
Sbjct: 134 RAIRAVSRGESAFDSRSASAVIRSLNGQTTPREGLTERELEVLQLLAKGLSNAKIGERLF 193

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  ++++IMRK     R+ A+  A +  ++
Sbjct: 194 ISATTVKFHVSNIMRKLDVGRRAEAVYEAGKLGLI 228


>gi|331699140|ref|YP_004335379.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953829|gb|AEA27526.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 2/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +A + +      L     +    F              + +     
Sbjct: 50  DVVLMDIRMPVLDGLAATREIASDPRLSGVRVVVLTTFAEDEYVFEAIRSGASGFLVKDT 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   + ++     ++         L+  +      +  V       LT RE E + 
Sbjct: 110 EPAELVHAVRVVADGDALLSPGVTRR--LIEEFAVRSGPAGAVAASALTVLTDREREVVA 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G T+D+IA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 168 LVAGGLTNDDIAERLVVSPATAKTHVSRAMGKLGCRDRAQLVVLAYESGLV 218


>gi|269796573|ref|YP_003316028.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269098758|gb|ACZ23194.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 217

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG+++ EIA  L +S  TV ++++ I  KT  + R+ A+  A  + +
Sbjct: 153 LTDREREVLVALAEGQSNTEIAESLHLSETTVKSHVSHIFTKTGARDRAQAVGIAYESGL 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|111023055|ref|YP_706027.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110822585|gb|ABG97869.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 208

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 16/163 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARI 140
            DL     +   +    + Q    L   VF T   +      +D     Y         I
Sbjct: 55  MDLALGAGIDGVEAIRRIRQVDRALPVLVFTTYDTDADVVRAIDAGAIGYLLKDSTPQEI 114

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        ++          +A+      +  +        LT RE E LT ++EG
Sbjct: 115 FAAVRGAAAGQSVLSPP-------VASRLLQQMQRPEEA------LTPREAELLTLMAEG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            T+ E+   L IS  TV  ++A I  K    TR+ A++ A+R 
Sbjct: 162 MTNKELGKALFISEATVKTHLAHIYAKLGVDTRAAAVSVALRR 204


>gi|224477373|ref|YP_002634979.1| response regulator of the two-component regulatory [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|81321267|sp|Q7WZY4|NREC_STACT RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|32330234|gb|AAP79640.1| NreC [Staphylococcus carnosus]
 gi|222421980|emb|CAL28794.1| response regulator of the two-component regulatory [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 217

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 23/183 (12%)

Query: 78  VSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPV----------FHTLPENITPP 123
           V    P  L+  +++   +        +++   +    +          FH L       
Sbjct: 42  VMQHQPDVLIMDLSMPPGESGLIATSKIVESFPDTKILILTMYDDEEYLFHVLRNGAKGY 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              +     L   V  +  G   + PK             L+  +  N  +  +      
Sbjct: 102 ILKNAPDEQLISAVRTVYRGDTYIDPK---------MTTSLVNEFVNNTGQDANSTNDPF 152

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L  I++G  + EIA  L +S  TV  +   IM+K   K++   + YA++ 
Sbjct: 153 RILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALKK 212

Query: 244 NIV 246
            ++
Sbjct: 213 KLL 215


>gi|298250464|ref|ZP_06974268.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548468|gb|EFH82335.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 8/177 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF------CPVFHTLPENITPPAGMDNR 129
            +VS   P  ++  + +   D     +++    F          +   E +        R
Sbjct: 44  HLVSELVPDVVLMDLRMPAMDG-LEAIEQIRATFPHIAIIVLTTYDEDELMLRSLQAGVR 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
              L        +  +    +G ++L+  L +  +L         +       + +LT R
Sbjct: 103 GYLLKDSGLETVLQAIERAARGEMLLQPELLQR-VLDYAARRAAPASPPPGNSNVQLTER 161

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+ G+ S EI   LGI+R TV +Y+ SI  K    +R+ A+A A+   ++
Sbjct: 162 EQEVLAGIATGERSKEIGARLGITRRTVESYLNSIYTKLDVDSRAAAVAVAIERGLL 218


>gi|289432845|ref|YP_003462718.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT]
 gi|288946565|gb|ADC74262.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. GT]
          Length = 232

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D+    L   V     G   L P     L ++  E  +    +A 
Sbjct: 90  VHEALRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSP----PLSEKAIEAYMEKTAEAT 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
               Y+        LT RE E L  +S+G T  EIA  L IS  TV  + A++MRK   +
Sbjct: 146 SLDPYET-------LTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLR 198

Query: 232 TRSGAIAYAVRNNIV 246
            ++  + YA++  I+
Sbjct: 199 NQTQLLRYALQRGII 213


>gi|120553107|ref|YP_957458.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
 gi|120322956|gb|ABM17271.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
          Length = 128

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 165 LAAYQANMFKSYDV------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           LA  QA M    +         G D  L+ RE   L  ++EG ++  I+  LGIS  TV 
Sbjct: 40  LALRQARMEPDAETCARTPEVAGPDEPLSDREQGVLDLLAEGLSNKAISKQLGISVATVK 99

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
           +++++I  K   + R  A+A A    +
Sbjct: 100 SHLSNIYGKLQAENRMQAVARARELGL 126


>gi|288924067|ref|ZP_06418126.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288344590|gb|EFC79060.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 171

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 14/131 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +          + R   L   +  +  G  LL P     + +RL +      ++   
Sbjct: 52  FSAIMAGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRRVLERLRD----GPHEDPA 107

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             +          L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +
Sbjct: 108 MAT----------LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLAS 157

Query: 233 RSGAIAYAVRN 243
           R+ A  Y ++ 
Sbjct: 158 RTQAAVYLMKQ 168


>gi|302535350|ref|ZP_07287692.1| two-component system response regulator [Streptomyces sp. C]
 gi|302444245|gb|EFL16061.1| two-component system response regulator [Streptomyces sp. C]
          Length = 219

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 2/123 (1%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++  G+ ++     ++       +    +  +++ ++ D      
Sbjct: 96  RAGASGFLLKDASARQLAEGVRVVAAGEALLAPSVTKRLISEFSKLSDVQRAADPSGVS- 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  YA   
Sbjct: 155 -ELTERETEVLVLIAQGLSNGEIADRLLVAESTIKTHVSRILVKLGLRDRTQAAVYAYET 213

Query: 244 NIV 246
            +V
Sbjct: 214 RLV 216


>gi|256378301|ref|YP_003101961.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922604|gb|ACU38115.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D     L   + R+  G  LL    + + R  + E        A 
Sbjct: 91  VFGALEAGASGFVLKDCDPEDLVSAIRRLAAGQGLL---DQAVTRRVIGEF-------AR 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 V    +  LT RE E +  ++EG+++ EIA  L I  +TV +++   M K   +
Sbjct: 141 RAPLPAVDPAVEDLLTAREKEVVVLLAEGRSNVEIAEALFIEPSTVKSHLGRAMTKIGAR 200

Query: 232 TRSGAIAYAVRNNI 245
            R   + +A +N +
Sbjct: 201 DRLQTVVWAYQNGL 214


>gi|302865544|ref|YP_003834181.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302568403|gb|ADL44605.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 216

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  + +    +    P  L    F                +     
Sbjct: 50  RVVLMDVRMPAIDGIQATRRLLAASA-DPPRVLVVTTFANDEYVYEALRAGAAGFLLKRA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A +   + ++     ++    + ++        + +   D    +   LT RE E L 
Sbjct: 109 RPAEVVQAIRVVAAGDSLLFPAAIRQL-------VDTYGRRDGDRLRAARLTEREAEVLR 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 162 LMAAGLSNPEIAARLVVGVETVKTHVGNVLAKLGVRDRTQAVVAAYESGFV 212


>gi|253997049|ref|YP_003049113.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983728|gb|ACT48586.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8]
          Length = 243

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 14/238 (5%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           NRE + + + V    +    L        +  + + +  +  Y+ A H ++         
Sbjct: 11  NRESQAKEAQVRLFNSLGAALFETGWNTDSPQYLLEL--IAAYIAAEHGIIATESAG--- 65

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
           KL+ + +      L +   +     + ++L+ P +     +         P+  D  Y  
Sbjct: 66  KLNIVATKGQ--TLPQGTRVPMLGIFASLLKYPVKFKAHQYQGSMFWTYTPSDADQEYL- 122

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHWGKDFEL 186
           +   + +  +GL+ L  +   +    L  +        LA  QA+   + D        L
Sbjct: 123 IPIAIGQQSVGLIALSGQNLQLSPHELITLQSISGILGLALKQASSMSAEDKDLTVIEHL 182

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E    +  G ++ E+A  LGIS  TV  ++  ++ K   + R+ A   A    
Sbjct: 183 TPREREVFALLPSGLSNRELATKLGISAGTVKIHVERVLSKLNLRDRTQAAVKAYELG 240


>gi|226305629|ref|YP_002765589.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184746|dbj|BAH32850.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 226

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 6/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIG 143
           V+   +   +    +L  P      V  T   +   ++      + +        ++   
Sbjct: 57  VQMPKMDGIEATRRLLADPDAPKVVVLTTFDNDEYVMSAIRAGASGFLLKDVPPEQLLDA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I          L  +   + +          ELT REVE L  ++ G ++
Sbjct: 117 IRTVHRGDAVIEARATRR---LLQHVGPLLEGSAPESQLPEELTPREVEVLEAMAYGLSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    +S  TV  ++  ++ KT ++ R  A+ +A +  +V
Sbjct: 174 SEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIGLV 216


>gi|39979986|gb|AAR32909.1| SplR [Serratia plymuthica]
          Length = 249

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 25/197 (12%)

Query: 63  LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVF 113
           L R + FQ    D ++ + +    PF     + L    K+  +     +      F  V 
Sbjct: 57  LYRANNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLKFTKIFSLSKQYNIINGFTFVL 114

Query: 114 HTLPENITP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
           H    N+       A              R  + ++L+       + ++++    LA   
Sbjct: 115 HDHMNNLALLSVIIASNGQEELEKRLSSERGAMQMLLID------INEQMYR---LAGAA 165

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           ++  + Y     K    T RE E L W S GKT  EIA I GIS +TV  ++ +I+ K  
Sbjct: 166 SSSNQKYHTDADKPI-FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLG 224

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI   V   ++
Sbjct: 225 VSNARQAIRLGVELELI 241


>gi|239979006|ref|ZP_04701530.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291450884|ref|ZP_06590274.1| two-component system regulator [Streptomyces albus J1074]
 gi|291353833|gb|EFE80735.1| two-component system regulator [Streptomyces albus J1074]
          Length = 237

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 8/157 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
           C  ++ +D    ++   +     V   +    T           L   V R   G  +  
Sbjct: 75  CQEVAGEDGPRVLVLSASGEHTDVLEAVKAGATGYLVKSAGTEELIDAVHRTARGDAVFT 134

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P    ++   L E   LAA  A      D        LT RE E L  +++G +  +IA 
Sbjct: 135 PGLAGLV---LGEYRRLAAGPAPTRGKPDAPR-----LTARETEVLRLVAKGLSYKQIAE 186

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L IS  TV N++ + + K     R   + YA+   +
Sbjct: 187 RLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEAGL 223


>gi|238025165|ref|YP_002909397.1| response regulator, NarL family protein [Burkholderia glumae BGR1]
 gi|237879830|gb|ACR32162.1| Response regulator, NarL-family protein [Burkholderia glumae BGR1]
          Length = 238

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 2/137 (1%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQ 169
           +   L    T     +     +   +  +  G   + P     I+            A  
Sbjct: 101 IVGALQAGATGYLLKERDDLEIALSIRSVLRGGAPIDPFVARYILDSVNAPPPATAPAAP 160

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A+              L+ RE+E L  +S+G T+ EI+ +L +SR TV  +I +I +K A
Sbjct: 161 ASTVTLPSRDGAPPVRLSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLA 220

Query: 230 TKTRSGAIAYAVRNNIV 246
            ++R+ A+  A  + ++
Sbjct: 221 VRSRTQAVFEARAHGLL 237


>gi|229489605|ref|ZP_04383468.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229323702|gb|EEN89460.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 230

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 6/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIG 143
           V+   +   +    +L  P      V  T   +   ++      + +        ++   
Sbjct: 61  VQMPKMDGIEATRRLLADPDAPKVVVLTTFDNDEYVMSAIRAGASGFLLKDVPPEQLLDA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I          L  +   + +          ELT REVE L  ++ G ++
Sbjct: 121 IRTVHRGDAVIEARATRR---LLQHVGPLLEGSAPEAQLPEELTPREVEVLEAMAYGLSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    +S  TV  ++  ++ KT ++ R  A+ +A +  +V
Sbjct: 178 SEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIGLV 220


>gi|172038808|ref|YP_001805309.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700262|gb|ACB53243.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 218

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 2/116 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            YC    +   + + L  +         D+L    + A +      + D        LT 
Sbjct: 105 GYCLKGIEAEHLVLALRSVAAGASWW--DKLGTTEIYAEFSQKNPINTDETKLIANLLTQ 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E L  I+ GKT+ EIA +L I+  TV  ++ +I++K   + R+ A   A+R N
Sbjct: 163 REQEILALIAAGKTNSEIAQVLHIATGTVRVHVHAILQKLDVRDRTQAAILALRMN 218


>gi|226940995|ref|YP_002796069.1| NarL [Laribacter hongkongensis HLHK9]
 gi|226715922|gb|ACO75060.1| NarL [Laribacter hongkongensis HLHK9]
          Length = 218

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   V     +           Y     +   +   +        ++  +      + A 
Sbjct: 82  LMLTVSEDGEDLAECMRLGARGYLLKNINAEFLLSSIRRAVTGDSVLSPE------MTAK 135

Query: 168 YQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             A +          D + LT RE E L  ++ G ++ EIA  L ++ +TV  ++ +I+R
Sbjct: 136 LVARLRDPRPAASRPDVDSLTPRERETLRHLARGASNKEIARSLDLAESTVKVHVQNILR 195

Query: 227 KTATKTRSGAIAYAVRNNI 245
           K    +R  A  +AV N +
Sbjct: 196 KLNLSSRVQAAVFAVENEL 214


>gi|308273005|emb|CBX29609.1| hypothetical protein N47_J05900 [uncultured Desulfobacterium sp.]
          Length = 229

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 12/182 (6%)

Query: 73  KLDSI--VSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLPENITPP-A 124
            LD+I  V    P  ++  + + + +    + +       T++     HT  E I     
Sbjct: 49  GLDAIRCVKKHNPAIILLDLNMPKMNGISVIKEIKSSCPATKIIVLTMHTKEEYIIEAFK 108

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                YC  +     + I +  +    + +  +   +I L    +       D  W    
Sbjct: 109 SGAEGYCLKSSSQEELLIAINAVLSGKKYVCPEISGKI-LEGYIEGQKTIKQDSSWDM-- 165

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  + EG  + EIA  L IS  TV  + A+IM K    T S   AY++   
Sbjct: 166 -LTQREKEVLKLVGEGYKNLEIADYLCISVKTVEKHRANIMEKLDLHTASALTAYSIERG 224

Query: 245 IV 246
           +V
Sbjct: 225 LV 226


>gi|253573801|ref|ZP_04851144.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847329|gb|EES75334.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 215

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 9/142 (6%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +     H   E +        R   L        +  + +  +G + +  +L      A+
Sbjct: 78  IIILTMHDDEEYLFHVLKKGARGYVLKNSPDEQLVSAIRMVHQGGVYIHPKL------AS 131

Query: 168 YQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                F S D    ++     L+ REVE L  +++G  + EIA +L IS  TV  + A I
Sbjct: 132 SLVREFVSQDQQADENNPYQLLSTREVEILPLVAKGYGNKEIAEMLHISVKTVEAHKAKI 191

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           M K   K+R   + YA++  ++
Sbjct: 192 MEKLNLKSRPELVEYAIKKKLL 213


>gi|226311198|ref|YP_002771092.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226094146|dbj|BAH42588.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 228

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELT 187
              L        +G   +              +  L+AY + + K  + D    K  +L+
Sbjct: 109 ALILPISYGPNVLGYAGISWHQDGCSGINHPLVQSLSAYCSMLGKVLATDSLRPKTVKLS 168

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE +  +S G++  E+A  +GIS  TV +YI S ++K   + R+  +A A+R  I+
Sbjct: 169 RREVEVMQRMSWGESVKEMASWMGISEFTVQDYIKSALKKLGVQNRAQGVADAIRQRII 227


>gi|158318665|ref|YP_001511173.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158114070|gb|ABW16267.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 244

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 14/131 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +          + R   L   +  +  G  LL P     + +RL +           
Sbjct: 125 FSAIMAGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRRVLERLRD----------- 173

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D        L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +
Sbjct: 174 GPSEDPAMAT---LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLAS 230

Query: 233 RSGAIAYAVRN 243
           R+ A  Y ++ 
Sbjct: 231 RTQAAVYLMKQ 241


>gi|268317984|ref|YP_003291703.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
 gi|262335518|gb|ACY49315.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
          Length = 218

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 4/147 (2%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
              +R   +   V     ++      +     +     + +   +  L      + + R 
Sbjct: 71  QARRRARSMRVLVLSMYDDDAYVVEALRGGAMAYVLKGSPVEELVQAL----EALYQGRR 126

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           +    L+       ++          LT RE + L   +EG TS EIA  L IS  TV  
Sbjct: 127 YLSAPLSERLLAQAEAPQDLRDPYETLTDRERQILHLTAEGYTSREIAERLFISPRTVEK 186

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  ++M K    +++  I YAV+  +V
Sbjct: 187 HRENLMAKLDIHSQAELIHYAVQRGLV 213


>gi|256395828|ref|YP_003117392.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362054|gb|ACU75551.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 258

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G ++ EIA  L +S  TV  ++   M K    +R+ A+  A  + +
Sbjct: 189 LTTRETDVLRLVATGLSNGEIAERLVVSEGTVKTHLNRAMAKLNLSSRAQAVVLAYESGL 248

Query: 246 V 246
           V
Sbjct: 249 V 249


>gi|312172015|emb|CBX80272.1| Transcriptional activator protein ExpR [Erwinia amylovora ATCC
           BAA-2158]
          Length = 240

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L W +EGKTS EI++IL IS+NTVN +   + ++     ++   +YA    ++
Sbjct: 181 SERELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240


>gi|282899743|ref|ZP_06307706.1| orrA (Two Component Transcriptional Regulator, LuxR family)
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195358|gb|EFA70292.1| orrA (Two Component Transcriptional Regulator, LuxR family)
           [Cylindrospermopsis raciborskii CS-505]
          Length = 238

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I +G ++ +IA  L I+  TV  ++ +I+ K     R+ A   A+R+ 
Sbjct: 176 PLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 235

Query: 245 IV 246
           +V
Sbjct: 236 LV 237


>gi|290962363|ref|YP_003493545.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22]
 gi|260651889|emb|CBG75019.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22]
          Length = 234

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D     L   V  +R G  LL P     L +R       A  +  
Sbjct: 93  VYAALSAGAAGFLLKDTTPEHLVAAVRLVRSGDALLAPAITRRLVERFARQDAPATPRHR 152

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          LT RE + L  ++ G  + E+A  LG+S  TV  ++A I+ K   +
Sbjct: 153 DLAA----------LTPRERDVLRLLAGGLNNAELADHLGLSEATVKTHVARILAKLGLR 202

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A R  +V
Sbjct: 203 DRVQAVIVAYRTGLV 217


>gi|186682185|ref|YP_001865381.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464637|gb|ACC80438.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 215

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 11/129 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D     L   +  +  G  LL P         L+E  L+      
Sbjct: 90  VFQAMRVGAKGYLLKDTEPDELMLAIRSVYKGQTLLGPG--------LFEKALIPIPVPV 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        +LT RE++ L  I+ G  + EIA  L +S NTV NY+ +I+ + + +
Sbjct: 142 PSVEPPPELA---QLTPRELDVLRLIASGANNREIAESLFLSENTVKNYVTNILSRLSLR 198

Query: 232 TRSGAIAYA 240
            R+ A  +A
Sbjct: 199 DRTQAALFA 207


>gi|256389850|ref|YP_003111414.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356076|gb|ACU69573.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 229

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + L  I+ G ++ EIA  L +   TV ++I  I  KT  + R+ A+ YA  + 
Sbjct: 163 DLSPREADVLRLIAAGHSNREIAKKLFVGEATVKSHINRIFTKTGCRDRAQAVQYAFTHG 222


>gi|196228529|ref|ZP_03127396.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196227932|gb|EDY22435.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P          +    +   V     G +L   +   I++  +  +    +Y +   ++ 
Sbjct: 78  PGARVLMLSALDGDEHIHLAVRAGAAGYVLKSAERGEIIQ-AIRAVHGGKSYFSPGLEAL 136

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                +  E++ RE E L   + G+ + EI   LGIS  TV  ++A I +K   + R+ A
Sbjct: 137 LHDRARKVEISPREREVLVRAAAGERNKEIGDHLGISEATVKVFMARIFQKLDARDRAHA 196

Query: 237 IAYAVRNNIV 246
           +  A++  I+
Sbjct: 197 VVIAIKRGII 206


>gi|254426902|ref|ZP_05040609.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
 gi|196193071|gb|EDX88030.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
          Length = 216

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 1/99 (1%)

Query: 146 LLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           LL    + I    LW    +L  Y              +  LT REVE L  ++ G  + 
Sbjct: 117 LLSKGIKAIFDGELWFPRAVLQTYLMKSRTFNKTFSRSEVSLTDREVEVLKVMATGAKNS 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EIA  L +S +T+  +I +I +K     R  A+ +A  N
Sbjct: 177 EIASSLNLSPHTIKTHIYNIFKKINASNRLQAVNWAQEN 215


>gi|251798752|ref|YP_003013483.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546378|gb|ACT03397.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 221

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D ELT RE E L  I+EG+++ EI   L IS  TV  ++++++ K   + R+     A R
Sbjct: 155 DEELTEREKEVLLLIAEGRSNKEIGEELHISVKTVKTHVSNLLMKCELEDRTQLAVLAHR 214

Query: 243 NN 244
             
Sbjct: 215 KG 216


>gi|21220239|ref|NP_626018.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256788647|ref|ZP_05527078.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289772542|ref|ZP_06531920.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|5531455|emb|CAB50960.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289702741|gb|EFD70170.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 221

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 2/158 (1%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            M   E          P  +     + L E +            L        +  + + 
Sbjct: 60  RMDGVEATSRLTASDSPPRVLILTTYDLDEYVFGALRAGASGFLLKDASRDRLLEAIRVV 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G  +L   +     L    A               LT RE E L  ++ G ++ EIA 
Sbjct: 120 HAGEALLSPSITR--RLIEDYATRAAPVRPREAVLAGLTPREREILLLVARGLSNPEIAA 177

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L ++  TV +++ S+  K   + R+ A+ +A  N IV
Sbjct: 178 RLVVTEATVKSHVGSMFAKLHLRDRAQAVVFAYENAIV 215


>gi|226307167|ref|YP_002767127.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226186284|dbj|BAH34388.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 224

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +   G   R   L   V  +  G  LL P         +    L++ +  +
Sbjct: 93  VAQAIRAGASGFIGKGIRAEDLLDAVRTVAGGNSLLSP---------IATSALISRFL-S 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                D   G   +LT RE+E +T ++ G ++DEIA  L IS  T   ++   M K   +
Sbjct: 143 TPSRADSTSGIFGQLTPRELEVVTLVALGMSNDEIAAELVISAVTAKTHVNRAMTKLDVR 202

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A +  +V
Sbjct: 203 DRAQLVVLAYQCGVV 217


>gi|295130489|ref|YP_003581152.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|291375667|gb|ADD99521.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313772396|gb|EFS38362.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313809915|gb|EFS47636.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313830246|gb|EFS67960.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834047|gb|EFS71761.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314973252|gb|EFT17348.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314975927|gb|EFT20022.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314984055|gb|EFT28147.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315096164|gb|EFT68140.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327326081|gb|EGE67871.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327446037|gb|EGE92691.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327447984|gb|EGE94638.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|328760418|gb|EGF73986.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
          Length = 237

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 10/176 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V    P  ++  + +   D       ++  +++   +  T   +      +D      
Sbjct: 40  DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99

Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D   +  GL  +     ++  +    +   + +Q        V   K  +LT RE
Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGT-----VTGSKAEQLTARE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E    ++ G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|15599074|ref|NP_252568.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAO1]
 gi|107103394|ref|ZP_01367312.1| hypothetical protein PaerPA_01004464 [Pseudomonas aeruginosa PACS2]
 gi|116051915|ref|YP_789242.1| transcriptional regulator NarL [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889841|ref|YP_002438705.1| transcriptional regulator NarL [Pseudomonas aeruginosa LESB58]
 gi|254236778|ref|ZP_04930101.1| two-component response regulator NarL [Pseudomonas aeruginosa
           C3719]
 gi|254242570|ref|ZP_04935892.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192]
 gi|296387604|ref|ZP_06877079.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAb1]
 gi|313109299|ref|ZP_07795267.1| two-component response regulator NarL [Pseudomonas aeruginosa
           39016]
 gi|9950059|gb|AAG07266.1|AE004805_4 two-component response regulator NarL [Pseudomonas aeruginosa PAO1]
 gi|115587136|gb|ABJ13151.1| putative nitrate/nitrite response regulator; NarL [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126168709|gb|EAZ54220.1| two-component response regulator NarL [Pseudomonas aeruginosa
           C3719]
 gi|126195948|gb|EAZ60011.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192]
 gi|218770064|emb|CAW25826.1| two-component response regulator NarL [Pseudomonas aeruginosa
           LESB58]
 gi|310881769|gb|EFQ40363.1| two-component response regulator NarL [Pseudomonas aeruginosa
           39016]
          Length = 219

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V + L          D     L   + +   G M L P+   IL   L            
Sbjct: 100 VVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILAQALR----------- 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                D       ELT RE + L  I+ G ++  IA  L I+  TV  ++  ++ K   +
Sbjct: 149 ----GDDRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMR 204

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A  +AV N++V
Sbjct: 205 SRVEAAVWAVENDLV 219


>gi|319441505|ref|ZP_07990661.1| LuxR family two component transcriptional regulator
           [Corynebacterium variabile DSM 44702]
          Length = 232

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 2/137 (1%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG-RIILRDRLWEIGLLAAYQA 170
           V   L        G       +   V  +  G  L  P   R ++   +          A
Sbjct: 92  VVSALRAGAGGFIGKGAEPEDIVRAVQAVHAGDSLFSPAATRSLITRYIDVPDATGQGGA 151

Query: 171 NMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           +   +      KD   LTGRE E L  + +G ++ EIA    IS +T   ++  IM K  
Sbjct: 152 SSGGTVSEDAAKDLARLTGREQEVLLLVGQGLSNQEIAEKFFISPHTAKTHVNRIMSKIN 211

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+  +  A  + ++
Sbjct: 212 AHDRAQLVILAYESGLL 228


>gi|294664209|ref|ZP_06729588.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292606021|gb|EFF49293.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 254

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183
           ++   +                    RL E  LL       A+QA   +  D    +   
Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQERRCHH 189

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +  
Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|115371976|ref|ZP_01459288.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115370941|gb|EAU69864.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 209

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 9/158 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            + L   D    +     E         P+       +      +   +     G +L  
Sbjct: 58  DLGLPVMDGMSALRAIRREF--------PDARILVLTLRQGDEDVHQAIQAGARGYLLKG 109

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G  IL D +  +     + A    +  V    D  LT RE + L  ++ G+++ +IA 
Sbjct: 110 ATGPEIL-DAIRAVHRGLRHVAPEAAAMLVERVGDSPLTERERQTLEAMARGRSNKQIAQ 168

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L I+  TV  ++  I+ K     R+ A+  A+R  ++
Sbjct: 169 ELSITEATVKAHVTQILSKLGVDDRTQAVTRALRRGLI 206


>gi|152984552|ref|YP_001346614.1| transcriptional regulator NarL [Pseudomonas aeruginosa PA7]
 gi|150959710|gb|ABR81735.1| two-component response regulator NarL [Pseudomonas aeruginosa PA7]
          Length = 219

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V + L          D     L   + +   G M L P+   IL   L            
Sbjct: 100 VVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILAQALR----------- 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                D       ELT RE + L  I+ G ++  IA  L I+  TV  ++  ++ K   +
Sbjct: 149 ----GDDRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMR 204

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A  +AV N++V
Sbjct: 205 SRVEAAVWAVENDLV 219


>gi|290960962|ref|YP_003492144.1| response regulator [Streptomyces scabiei 87.22]
 gi|260650488|emb|CBG73604.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 225

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 9/193 (4%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--------YYNVLQRPTELFCPVF 113
           + V  +    ++   +V    P  ++  + +   D             L     L    F
Sbjct: 28  MEVVAEAADGREAVDLVRVHRPDVVLMDIRMPGTDGLTATSVICADEELADTRVLILTTF 87

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                         + +         +  G+  +     ++       + +     A   
Sbjct: 88  EIDEYVAQALRSGASGFLGKDVTADLLLDGIRTVAAGDTLLSPAATRTL-ITRFLAAPAP 146

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S      +   LT RE E ++  +EG ++DEIA  L +S  TV  ++   M K   + R
Sbjct: 147 GSRLTTPERLTTLTSREREVMSLAAEGSSNDEIAEKLYVSPLTVRTHVHRAMTKLGARDR 206

Query: 234 SGAIAYAVRNNIV 246
           +  +  A ++ +V
Sbjct: 207 AQLVVMAYQSGLV 219


>gi|256381033|ref|YP_003104693.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255925336|gb|ACU40847.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 219

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 12/158 (7%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             M   E +    ++   +     V   +    +           L   V R   G  + 
Sbjct: 68  TRMIAGELEGTRVLVLSASGEHDDVLEAVKAGASGYLVKSASAEELVEAVNRTAAGDAVF 127

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                 +         +L  Y+       +V      +LT RE E L  +++G T+ +IA
Sbjct: 128 TSGLAGL---------VLGEYRRMAAAPDEVDRP---QLTDRETEVLRLVAKGLTARQIA 175

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS  TV N++ S +RK     R     YA+ + +
Sbjct: 176 TRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 213


>gi|111023439|ref|YP_706411.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110822969|gb|ABG98253.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 216

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  +           P  +       + + +     +      L  
Sbjct: 46  DVVLMDVRMPEMNGLDAARIIL-SAGFDPPVRVLMLTTFDVDDYVYEALSIGASGFMLKD 104

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A   I  + +   G  +L   +     L A   +   +          LT RE E L 
Sbjct: 105 APAEELIRAVRVVADGEALLAPTVTR--RLIADVTSRRSTARRKPAALSALTPREREVLE 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L ++  TV  ++  ++ K   + R+ A+  A  + +V
Sbjct: 163 LIARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 213


>gi|297197233|ref|ZP_06914630.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717281|gb|EDY61315.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 2/158 (1%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +  +        L     L    + T    +       + +       A +   +  + 
Sbjct: 63  GIEATRLIAADEDLAGVKVLVLTTYETDEHIVEALRAGASGFLVKDIRPAELLDAIRTVA 122

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++         L+A +      +     G   EL+ RE + L  ++ G  + EIA 
Sbjct: 123 AGESLLSPG--PTSRLIARFLLAPNTAPKPALGGPSELSERERQVLALVARGLNNAEIAD 180

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LG+S  T   +++ IM K   + R+  +  A  + +V
Sbjct: 181 ALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 218


>gi|119025623|ref|YP_909468.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765207|dbj|BAF39386.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 249

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D    +L   +  +  G  ++ P     L +++ +        A 
Sbjct: 107 VMAAINAGASGFLLKDTEPETLLNSIRTVYQGNAIIAPSATKRLIEKMMDGDFAGTAAAA 166

Query: 172 MFKSYDVHWGKDF--------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              +                 ELT RE E L  I+ G ++ EIA  L IS  TV  ++A 
Sbjct: 167 PVSATSASASTATMYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAH 226

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R  A+ +A  N++V
Sbjct: 227 ILSKINARDRVQAVVFAYENHLV 249


>gi|330891500|gb|EGH24161.1| LuxR transcriptional regulator [Pseudomonas syringae pv. mori str.
           301020]
          Length = 247

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 21/194 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           + +  ++ S++P   ++    S       +++       P F     N       D+   
Sbjct: 52  RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 111

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   + +     R+ E        L  +   + K
Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 171

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H         +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   
Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231

Query: 231 KTRSGAIAYAVRNN 244
           +T   A+  A+   
Sbjct: 232 RTAKQAVYKAINMG 245


>gi|294625280|ref|ZP_06703918.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292600401|gb|EFF44500.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 254

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183
           ++   +                    RL E  LL       A+QA   +  D    +   
Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQERRCHH 189

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +  
Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|284042019|ref|YP_003392359.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946240|gb|ADB48984.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 65/176 (36%), Gaps = 7/176 (3%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E++   +V  D     +  +  + + +    ++    +    F      +         +
Sbjct: 45  ERRRPDLVLMDIRMPRMDGLEATRRLRAVTGVEV---IVVTTFDLDEYVLDALRAGAVGF 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                   RI   +  +     +I  +    + L     A   ++ D       ELT RE
Sbjct: 102 LVKDSAPERIVDAVRSVARGDALISPEVTRRL-LEQFVSAAPARAGDATLA---ELTPRE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  I+ G+++ EIA +L +  +TV  ++  ++ K    +R  A+ YA    +V
Sbjct: 158 RDVLLGIAAGRSNAEIAALLQLEESTVKGHVGRMLAKLGLHSRVQAVIYAYETGLV 213


>gi|269839567|ref|YP_003324259.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791297|gb|ACZ43437.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 218

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 7/168 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVL---QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           P  ++  + +   D             E+   V     ++      + +      F   R
Sbjct: 46  PDVVLMDLKMPGMDGLAATRMISAEMPEVKVVVLTASEDDEDLFEAVKSGALGYMFKDVR 105

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                 LL    R       +  GL       M K       +   LT RE E L  + +
Sbjct: 106 SDQFFELLEAASRGEPA---FTPGLARKLLREMSKPAGRAEREPEVLTEREQEILELLVQ 162

Query: 200 GKT-SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T + E+A  L +S NTV  ++ +I+ K   + R+  +AYA+++ +V
Sbjct: 163 GVTSNKELAERLILSENTVKYHLRNILDKLHLQNRTQVVAYALQHGLV 210


>gi|103488004|ref|YP_617565.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98978081|gb|ABF54232.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis
           RB2256]
          Length = 276

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 84/250 (33%), Gaps = 18/250 (7%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           +    +  + V H     +L       D        +      +G  HF L   D     
Sbjct: 17  SGTRRRPMNDVKHYYLTEELAQEFTGADREEQLFAALTKAAGRMGFDHFALAF-DRRGTG 75

Query: 73  KLDSIVSSDWPFDLVRCM---ALSEKDKYYNVLQRP--------TELFCPVFHTLPENIT 121
           +  SI+  ++P    +      LS  D      +R          + + P+     + ++
Sbjct: 76  EPASILVHNYPDAWAKVYVGFDLSGTDPIRRASERSLTGFEWRHVDRYIPLSRGDRQLLS 135

Query: 122 PP--AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSY 176
               +G+ + +                       I  D L     +G +A   A      
Sbjct: 136 VARDSGVGDGFTVPRHLPGEASGTCSFAVRPHADIPADMLHAAEILGAIAIASARELIGS 195

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                +   LT R+ EC+ W + GKT+ EIA ILGIS  TV  ++     + +   RS  
Sbjct: 196 SPLRPRPI-LTERQRECVLWSARGKTAGEIADILGISEETVVRHLKMARERYSVHCRSML 254

Query: 237 IAYAVRNNIV 246
           I  A+ + ++
Sbjct: 255 ILCALFDGLI 264


>gi|300790995|ref|YP_003771286.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800509|gb|ADJ50884.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 261

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%)

Query: 134 TFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
           + D  R+   +     + R I   L          AA + ++             L+ RE
Sbjct: 124 SIDSRRLAEAIRRAHSERRYIDPALAALTARPKRTAAPKGDLAHDSPPAPRGAMPLSRRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  ++EG  +  IA +L +S  TV  ++ SI+RK + + R+ A+  A R+ I+
Sbjct: 184 YQVLQLVAEGLENSAIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRSGIL 239


>gi|302518567|ref|ZP_07270909.1| two-component system regulator [Streptomyces sp. SPB78]
 gi|302427462|gb|EFK99277.1| two-component system regulator [Streptomyces sp. SPB78]
          Length = 226

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R  +G  +  P    ++      +G     
Sbjct: 92  HADVLEAVKSGATGYLVKSASTEELIEAVRRTAVGDAVFTPGLAGLV------LGEYRRL 145

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A           +   LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 146 AAEPEPKTSGGGPETPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 205

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 206 QLHNRVELVRYAIEQGL 222


>gi|257069188|ref|YP_003155443.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256560006|gb|ACU85853.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 229

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 3/156 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A +E        + P  +    F      +       + +         +   +  +   
Sbjct: 72  ATAEILAQAPEGRAPKIIVLTTFDLDEYVVAAIRAGASGFLLKDAQPEDLLGAIRTVHSG 131

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I       + L     A   +  D    ++  LT RE E LT +  G ++ EI   L
Sbjct: 132 DAVIAPSATRRL-LERVVAAPEPEQQDASVLEN--LTEREREVLTLMGRGFSNQEIGAEL 188

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  TV  ++  ++ K   + R  A+  A    +V
Sbjct: 189 FVAEATVKTHVGRVLAKLGARDRVQAVIIAFETGLV 224


>gi|254382674|ref|ZP_04998032.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194341577|gb|EDX22543.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 233

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 13/195 (6%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA  + L R     E+  D +V  D        +A +        L     +    F   
Sbjct: 42  GAQAYALAR-----ERGAD-VVLMDIRMPGTDGLAATRMISADPELAGVRVVMLTTFEVD 95

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN----- 171
              +       + +     +   +   + +      ++        GL+A + A      
Sbjct: 96  EYVVQSLRAGASGFLGKGAEPEELLNAIRVAAAGEALLSPAATK--GLIATFLAQGGREE 153

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +   H  +   LT RE E L  ++ G ++D IA  L +S  TV  ++   M K   +
Sbjct: 154 RAAATGAHAQQLAALTVREREVLVHVAAGLSNDGIAGRLEVSPLTVKTHVNRAMAKLGAR 213

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A  + +V
Sbjct: 214 DRAQLVVIAYESGLV 228


>gi|124022269|ref|YP_001016576.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123962555|gb|ABM77311.1| possible DNA-binding response regulator [Prochlorococcus marinus
           str. MIT 9303]
          Length = 241

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 30/240 (12%)

Query: 18  QRTSFVSH-LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           Q+TS  SH L  RS  +          SW      L   VGA+          +++ L  
Sbjct: 11  QKTSQQSHPLLRRSRTVVATADRVLITSWVGWFDCLGPLVGAAT--------GEDETLSC 62

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF----------CPVFHTLPENITPPAGM 126
           + SS+   DL+ C  L E     +++++  +L            PV  TL + I      
Sbjct: 63  LKSSN--ADLLICTDLLESGNGPSLVRKAKQLKPDLKALMLIQRPVLRTLLDAIEAHC-- 118

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            +  C+         +G   L      I  D  +   ++A    +          +   L
Sbjct: 119 -DGLCA------HELVGSGTLLAALSAIESDGTYLDSVVAGVLRHGRLGNGKTSSQIDNL 171

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + L  I +G ++  IA  L +S +TV +++ ++++K   + R+ A+  A R+ +V
Sbjct: 172 SLREGDVLRGICKGMSNQNIADELYLSIDTVKSHVHNLLQKLPARDRTHAVVVAFRDGLV 231


>gi|86356681|ref|YP_468573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280783|gb|ABC89846.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 86

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E + W+++GKT+ EI  ILGIS  TVN +I++   K      +  +A A+RN I+
Sbjct: 26  TPREREIIGWMAQGKTAAEIGTILGISPITVNTHISNAKAKLGVFKETALVAAALRNGII 85


>gi|326318213|ref|YP_004235885.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375049|gb|ADX47318.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 361

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE E L W+ +GKT+ +I  ILG S  TV  ++  +  K   +TR+ A   A+  
Sbjct: 292 FRLTAREAEVLYWLLKGKTNRDIGDILGSSPATVKKHLERVYVKLGVETRTAAAGIAMAR 351


>gi|320011249|gb|ADW06099.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 230

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 7/137 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           LT  V     G  +  P    ++   L E   LA+ 
Sbjct: 98  HADVLEAVKSGATGYLLKSASTQELTDAVRATAAGDPVFTPGLAGLV---LGEYRRLASD 154

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 155 PAPAAP----DQPKVPQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 210

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 211 QLHNRVELVRYAIEAGL 227


>gi|238782956|ref|ZP_04626984.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
 gi|238716159|gb|EEQ08143.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
          Length = 244

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 26/176 (14%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENITPPAGMDNRYCS----- 132
           PF     + ++   K   +     E         V H    N+T  + M ++ C      
Sbjct: 78  PFSWDENIMINSGLKLPKIFDVAKEYDVINGHTFVLHDQYYNLTILSLMTDKDCDEDIED 137

Query: 133 -LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGRE 190
            +  D A I++ LML+  K              L ++  ++ +S D    G++   T RE
Sbjct: 138 KIANDKANIQMLLMLIHEK--------------LTSFYNDLNRSSDFCKMGRNEIFTKRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E + W S GK+  EIA+ILGI   TV +++  ++RK        AI+ AV   ++
Sbjct: 184 NEIIYWASVGKSYPEIALILGIKPTTVKHHMGKVVRKLGVTNAKHAISLAVELQLI 239


>gi|229589665|ref|YP_002871784.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361531|emb|CAY48407.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 504

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELT 187
           Y  +  ++   +   + L      +++D  W    L    AN     S +       +LT
Sbjct: 378 YLLVMMNITERKRSELELVAAIEEVMQDASWFSQTLIEKLANAKSVNSPNQPNISFTDLT 437

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I EG    EIA+ L ++ NTV N++A++  K    +RS AI +A    +
Sbjct: 438 ARERDVLGLICEGLADKEIALRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWARERGL 495


>gi|224552990|gb|ACN54746.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWIS 198
           + + ++ L      I   R   I  L          Y  H   K+  L+ RE E L W+S
Sbjct: 101 VLLSVIGLKDSEHDIENHRQKFISFLTNLHQKTLNLYSQHQQKKNVFLSPREREILKWVS 160

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  E+++IL I+  TV  ++ ++M+K        A+       ++
Sbjct: 161 AGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGAELQLL 208


>gi|2765450|emb|CAA75536.1| nitrate/nitrite regulatory protein [Pseudomonas aeruginosa PAO1]
          Length = 216

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V + L          D     L   + +   G M L P+   IL   L            
Sbjct: 97  VVNVLRAGADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILAQALR----------- 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                D       ELT RE + L  I+ G ++  IA  L I+  TV  ++  ++ K   +
Sbjct: 146 ----GDDRSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMR 201

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A  +AV N++V
Sbjct: 202 SRVEAAVWAVENDLV 216


>gi|111023025|ref|YP_705997.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110822555|gb|ABG97839.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 228

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R I      E    +   + + +S +        LT RE+E L  +++G ++ +I   L 
Sbjct: 134 RAIRAVSRGESAFDSRSASAVIRSLNGQTTPRDGLTERELEVLQLLAKGLSNAKIGERLF 193

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  ++++IMRK     R+ A+  A +  ++
Sbjct: 194 ISATTVKFHVSNIMRKLDVGRRAEAVYEAGKLGLI 228


>gi|229589152|ref|YP_002871271.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361018|emb|CAY47880.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 254

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRI--ILRDR---LWEIGLLAAYQANM---FKSYDVHWGKD 183
           S+   + R     +     G+   +L+D    L +  L++           S ++     
Sbjct: 130 SVPIHLPRGGFASLTGLRTGKAHSVLQDAQQTLSDFSLISHALQEAAYPLFSKELRTYPH 189

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL W ++G T+ EIA  L  S   V  ++AS M K   K R  A+  A   
Sbjct: 190 IHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|73748824|ref|YP_308063.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73660540|emb|CAI83147.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
          Length = 232

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D+    L   V     G   L P     L ++  E  +    +A 
Sbjct: 90  VHEALRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSP----PLSEKAIEAYMEKTAEAT 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
               Y+        LT RE E L  +S+G T  EIA  L IS  TV  + A++MRK   +
Sbjct: 146 SLDPYET-------LTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLR 198

Query: 232 TRSGAIAYAVRNNIV 246
            ++  + YA++  I+
Sbjct: 199 NQTQLLRYALQRGII 213


>gi|324997378|ref|ZP_08118490.1| putative two-component system response regulator [Pseudonocardia
           sp. P1]
          Length = 239

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 61/188 (32%), Gaps = 14/188 (7%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP--------VFHTLPE 118
           +         +  S  P  ++  + +   D      +R   L  P         F     
Sbjct: 51  EASDGGAAAELAESLTPDVVLMDVRMPGTDG-IEGTRRIRALRDPGIRVLVVTTFDLDRH 109

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                    + +     +   +++ +  +     +        +       + +    + 
Sbjct: 110 VYDALRAGASGFVLKDVEPEDLQVAVRTVHAGHELFAPSVTRRL-----VGSFVPADPEP 164

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    LT RE + L  ++ G ++ EIA  L +   TV  ++++++ K   + R   + 
Sbjct: 165 GAGPAGALTERERQVLGLVAAGLSNAEIAARLVLGGTTVKTHVSNLLTKLDLRDRVQLVV 224

Query: 239 YAVRNNIV 246
           +A  + +V
Sbjct: 225 FAYEHGLV 232


>gi|269956981|ref|YP_003326770.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305662|gb|ACZ31212.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 937

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 13/117 (11%)

Query: 141 RIGLMLLFPKGRIILRDRLWEI---------GLLAAYQANMFKSYDVHWGKDF----ELT 187
           R G  L+    R   RDRL            GL+ A    + +   +  G        LT
Sbjct: 821 RDGEALVDAGDRAAARDRLEAAVAEAEHIGAGLVTAKARALLRRAGLTAGGRVTAPDALT 880

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE + L  ++EG T+ +IA  L IS  TV+ ++++I+RK    +R+ A    VR  
Sbjct: 881 AREEQVLALVAEGLTNGQIAARLFISVKTVSVHVSAILRKLGVSSRTEAALKGVRKG 937


>gi|182439137|ref|YP_001826856.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467653|dbj|BAG22173.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 244

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 7/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +A +        L     +    F      +       + +     
Sbjct: 66  DVVLMDIRMPGTDGLAATRMISADPELSAVRVVMLTTFEVDEYVVQSLRAGASGFLGKGA 125

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190
           +   +   + +      ++        GL+A + A    S +     ++      LTGRE
Sbjct: 126 EPDELLNAIRIAAAGEALLSPAATK--GLIATFLAQGGSSGEGPDSAEYAERLAALTGRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++ G ++D IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 184 REVLVQVAGGHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 239


>gi|312198139|ref|YP_004018200.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229475|gb|ADP82330.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 227

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 9/139 (6%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           E    V   L    +   G      +L   +  +  G  LL P              L+ 
Sbjct: 90  ETDELVLAALRAGASGYLGKGVAPNTLLDAIRTVAAGESLLSPTA---------TTALVR 140

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            + A+     D       +LT RE E    ++ G +++EIA +L IS  T   ++   M 
Sbjct: 141 RFLASPQPRLDARLPAMTDLTAREREITVLVARGLSNEEIAELLVISPATAKTHVNRAMT 200

Query: 227 KTATKTRSGAIAYAVRNNI 245
           K   + R+  + +A  N +
Sbjct: 201 KVHARDRAQLVVFAYENGL 219


>gi|84622824|ref|YP_450196.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578132|ref|YP_001915061.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84366764|dbj|BAE67922.1| transcriptional regulator ahyR/asaR family [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522584|gb|ACD60529.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 254

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183
           ++   +                    RL E  LL       A+QA   +  D    +   
Sbjct: 130 TVPLHLPGGAFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHH 189

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +  
Sbjct: 190 IPLTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|308176214|ref|YP_003915620.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743677|emb|CBT74649.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 224

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D +LT RE E L  ++EG ++ EIA  L I   TV  +++SI+ K   + R  AI +
Sbjct: 149 ESADADLTPREREVLAALAEGSSNAEIAEQLFIEIGTVKTHVSSIILKLGVRDRVQAIVW 208

Query: 240 AVRNN 244
           A +++
Sbjct: 209 AYQHH 213


>gi|254391866|ref|ZP_05007060.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294816214|ref|ZP_06774857.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|326444547|ref|ZP_08219281.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197705547|gb|EDY51359.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328813|gb|EFG10456.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 244

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 3/159 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++  ++    +     L    F      +         +         +   L ++   
Sbjct: 80  GIAATEQLTRQVPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELVTALHVVHTG 139

Query: 151 GRIILR---DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             ++      RL    +    +     +     G    LT RE E    I+ G  +  IA
Sbjct: 140 EAVVAPRLLTRLISSYVTVPQRPATPAAGTRPTGVPDGLTPREREVWRLIAAGLDNTGIA 199

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + IS +TV N+I ++  K   + R+ A+  A    +V
Sbjct: 200 AEMFISPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 238


>gi|310824729|ref|YP_003957087.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309397801|gb|ADO75260.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 200

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 9/158 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            + L   D    +     E         P+       +      +   +     G +L  
Sbjct: 49  DLGLPVMDGMSALRAIRREF--------PDARILVLTLRQGDEDVHQAIQAGARGYLLKG 100

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G  IL D +  +     + A    +  V    D  LT RE + L  ++ G+++ +IA 
Sbjct: 101 ATGPEIL-DAIRAVHRGLRHVAPEAAAMLVERVGDSPLTERERQTLEAMARGRSNKQIAQ 159

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L I+  TV  ++  I+ K     R+ A+  A+R  ++
Sbjct: 160 ELSITEATVKAHVTQILSKLGVDDRTQAVTRALRRGLI 197


>gi|262273889|ref|ZP_06051702.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP
           101886]
 gi|262222304|gb|EEY73616.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP
           101886]
          Length = 224

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 25/188 (13%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           +S  +L+    F+   +  +  S  PF      AL                   VF    
Sbjct: 53  SSGLVLIDLSAFEGDTVGFVKQSLAPFSEQHVFALFNAHDLSAKELASWPFIKGVFKKED 112

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +      G++                   +      + R +L E  L+  YQ N      
Sbjct: 113 DLEHLCHGIEK------------------MLSGEYWLPRQKLAE--LIHYYQQNNNNID- 151

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                +  LT RE + L  +  G ++ EIA  L +S +TV +++ +I +K   K R  A+
Sbjct: 152 ---YSEICLTNREQQILRKLVTGASNSEIADSLFVSEHTVKSHLYNIFKKINVKNRVQAV 208

Query: 238 AYAVRNNI 245
            +A +NN+
Sbjct: 209 FWA-KNNL 215


>gi|302522327|ref|ZP_07274669.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302431222|gb|EFL03038.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 265

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G ++ +IA  L +S  TV  +I ++  K   + R+ A+ YA  + I
Sbjct: 197 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 256

Query: 246 V 246
           V
Sbjct: 257 V 257


>gi|331696674|ref|YP_004332913.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951363|gb|AEA25060.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 7/173 (4%)

Query: 77  IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +V+   P  ++  + +   D       +L RP      V  T   +      +       
Sbjct: 49  LVARLRPAVVLMDVRMPTVDGITATRALLARPDPPRVLVLTTFGNDGHVYEALRAGATGF 108

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
               AR      ++     +   + L     +    A +             LT RE E 
Sbjct: 109 LLKRARPAD---IVSAVRTVASGESLLFPAAVRELVAAVGPDTGDRLAGR-GLTDRESEV 164

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G ++ EIA  L +   TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 165 LRGMARGLSNAEIAAELVLGVETVKTHVGNVLAKLGVRDRTQAVVAAFESGFV 217


>gi|290509972|ref|ZP_06549342.1| LuxR family transcriptional regulator, maltose regulon positive
           regulatory protein [Klebsiella sp. 1_1_55]
 gi|289776688|gb|EFD84686.1| LuxR family transcriptional regulator, maltose regulon positive
           regulatory protein [Klebsiella sp. 1_1_55]
          Length = 921

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+ A++ A+   
Sbjct: 859 ELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 918

Query: 245 IV 246
           ++
Sbjct: 919 LL 920


>gi|218437802|ref|YP_002376131.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218170530|gb|ACK69263.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 228

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K+ +LT RE E L ++ +G ++++IA  L I+  TV  ++ +I  K   K R+ AI  A
Sbjct: 158 DKELDLTKREKEVLQYLIQGLSNEQIAKQLYITVATVKAHLTAIFNKLGVKNRTQAIVAA 217

Query: 241 VRNN 244
           ++ N
Sbjct: 218 LKMN 221


>gi|330469956|ref|YP_004407699.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328812927|gb|AEB47099.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 218

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 9/161 (5%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++R +  +       +L    E    V   +    T               V R   G 
Sbjct: 65  EVIRGLRAAWPQVRVLMLSASGEQ-QGVLDAVKAGATGYLLKSAALAEFLDAVRRTAAGE 123

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +  P    ++   L E   LAA         +        LT RE E L  +++G +  
Sbjct: 124 PVFTPGLAGLV---LGEYRRLAAAGG-----PEPGQDTAPRLTERETEVLRLVAKGMSYK 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  LG+S  TV N++ + + K     R     YA+   +
Sbjct: 176 QIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTRYAIERGL 216


>gi|320106060|ref|YP_004181650.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924581|gb|ADV81656.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 207

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE E L  I++G+++ EIA  L I+  TV  +++S++ K   + R+ A  YA++ 
Sbjct: 142 VELTPRESEVLICITQGRSNREIAEQLRIAEKTVRIHVSSVLDKMGARDRTQATIYALQR 201

Query: 244 NIV 246
            +V
Sbjct: 202 GLV 204


>gi|289768636|ref|ZP_06528014.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289698835|gb|EFD66264.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 227

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 9/177 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPA-GMDNR 129
            +V+   P  ++  + +   D      +       T++     +   E++ P        
Sbjct: 49  RVVAELAPDVVLMDLRMPRCDGVEATRRIRSEHPGTQVVVLTTYADDESLFPALHAGARG 108

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +       I   +  +      +          L  + +               LT R
Sbjct: 109 YLTKDAGGDEIVRAVHSVLSGDAGLAPSIQRR---LLEWLSESEPRPTGPPEPPDGLTTR 165

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+EG T+ +IA  L +S  TV  +I ++  KT  K R+ A+ YA    +V
Sbjct: 166 ETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV 222


>gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
          Length = 203

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV---LQRPTEL 108
           +++Y+    + +   +  Q+      +  + P  ++  + + E D Y  V    +     
Sbjct: 13  VSDYLELRGYQVTIAENGQKALEK--LEEEVPELIICDIMMPEMDGYTLVKLIRENSQFG 70

Query: 109 FCPVFHTL-----PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           + PV          + +       + Y    FD   +   +     +   + R R   IG
Sbjct: 71  WIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQTERLTRYRKSVIG 130

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                      S  +      ELT  E++ +  +++GK + EI+ I+ +S+ T+ ++I++
Sbjct: 131 ----------TSPKIKVRSGVELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISN 180

Query: 224 IMRKTATKTRSGAIAYAVR 242
           ++ KT    R+    +A+ 
Sbjct: 181 MLGKTGLHNRTQLARWALE 199


>gi|284034471|ref|YP_003384402.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283813764|gb|ADB35603.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 242

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 10/172 (5%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYCSL 133
            P  +V  + +   D      Q   +        L    + T            + +   
Sbjct: 61  HPDVVVMDIQMPGMDGLTATAQICADPDLRASRVLILTTYETDEYVAQALRAGASGFIGK 120

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             D   +   +  +     ++         L+A + A    +      +   LT RE E 
Sbjct: 121 GIDADGLIDAVRTIADGDALLSPAATR--SLVARFLATPVDTAPRDVERLVALTPREREM 178

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  ++ G ++ EIA  + +S  TV  ++   M K   + R+  +A A R  +
Sbjct: 179 VALVATGLSNLEIADRMYVSPFTVRAHVQRAMTKLEARDRAQLVAIAYRTGL 230


>gi|319940792|ref|ZP_08015131.1| NarL protein [Sutterella wadsworthensis 3_1_45B]
 gi|319805674|gb|EFW02455.1| NarL protein [Sutterella wadsworthensis 3_1_45B]
          Length = 220

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 14/154 (9%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--------D 157
            E    +  T P        +     +L   +     G +L       +LR        D
Sbjct: 63  REALEQIRETHPNLAVLMLTVSEDCEALGECLKLGARGYLLKKIDQDFLLRSIRAAYNGD 122

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILG 211
            +    ++  +   + +  +    +  +      LT RE + L W++ G ++ EIA  L 
Sbjct: 123 SVISPQMMTKFVNRLSEPPEAARTRQAQGTDPTVLTRRERQTLAWLARGVSNKEIARALN 182

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ +TV  ++ SI+RK    +R  A  YA+ + I
Sbjct: 183 LAESTVKVHVQSILRKLNLSSRVQAAIYAIEHKI 216


>gi|302869854|ref|YP_003838491.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|302572713|gb|ADL48915.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
          Length = 225

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 10/147 (6%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            +   L   V     + I         Y + T     +   +  +     +         
Sbjct: 86  PQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPEELTGAIRRVADGDAVFSP------ 139

Query: 163 GLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             LA +  + F S       D EL   T RE E L  ++ G    EIA  L IS  TV  
Sbjct: 140 -RLAGFVLDAFASRPDAPVADPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVET 198

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++RK     R     +A    +V
Sbjct: 199 HVSNVLRKLQMSNRYELSRWAADRRLV 225


>gi|319441809|ref|ZP_07990965.1| putative NarL family two-component response regulator
           [Corynebacterium variabile DSM 44702]
          Length = 228

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 49/134 (36%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D     L   V     G  LL P     L +           +  
Sbjct: 94  VFEALQMGCSGFLLKDAPAGELVRAVRLAVTGEALLAPSVTKRLIEDAVAKRPAGRIRGG 153

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  I+ G+++ EIA  L IS  TV  ++  +++K + +
Sbjct: 154 ESAGEQAALKALRSLTPREHEILEQIATGRSNQEIAGTLFISEETVKTHVRKVLQKLSLR 213

Query: 232 TRSGAIAYAVRNNI 245
            R  A+ +A  N +
Sbjct: 214 DRVQAVVFAYENGV 227


>gi|302865580|ref|YP_003834217.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302568439|gb|ADL44641.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 220

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 75/218 (34%), Gaps = 13/218 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++ +D        + AL +       VG +        + +EQ+ D IV  D       
Sbjct: 5   RVVLVDDQHLVRTGLRALLDRAPDIEVVGEAGDGGSALSVVREQRPD-IVLMDVRMPGGD 63

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +  + +    ++L     +    F                +         +R  +  + 
Sbjct: 64  GLEATRRILTDSMLDGVQVVMLTTFDDDEYLFEAIRAGAAGFLLKDTPPDALRDAVRTVA 123

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                   D L    +     A   +S     G+   LT RE + L  +  G+++ EI  
Sbjct: 124 GG------DALLSPAVTRRVLAAAARSPVADPGRLAGLTARERDVLAQVGAGRSNAEIGQ 177

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S +T   Y++ +++K   + R+  +  A  + +V
Sbjct: 178 ALFLSPDTARTYVSRLLQKLNARDRAQLVVIAYESGLV 215


>gi|224283310|ref|ZP_03646632.1| two component transcriptional regulator, LuxR family protein
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 240

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 12/147 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----- 166
           V   +    +     D    +L   +  +  G  ++ P     L +++ E G        
Sbjct: 94  VMAAINAGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTA 153

Query: 167 ----AYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               A  ++           D EL   T RE E L  I+ G ++ EIA  L IS  T   
Sbjct: 154 TDGYADGSSTMPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKT 213

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++A I+ K   + R  A+ +A  N +V
Sbjct: 214 HVAHILAKINARDRVQAVVFAYDNGLV 240


>gi|158315847|ref|YP_001508355.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111252|gb|ABW13449.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 216

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 14/131 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +          + R   L   +  +  G  LL P     + +RL +           
Sbjct: 97  FSAIMAGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRRVLERLRD----------- 145

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D        L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +
Sbjct: 146 GPSEDPAMAT---LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLAS 202

Query: 233 RSGAIAYAVRN 243
           R+ A  Y ++ 
Sbjct: 203 RTQAAVYLMKQ 213


>gi|116621307|ref|YP_823463.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224469|gb|ABJ83178.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 207

 Score = 91.6 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REV+ L  I  G  + +IA  L I+ +TV N++ +I+ K   + R+ A   A++  
Sbjct: 144 DLSAREVQVLGLIVRGLANKQIAFTLSIAEHTVKNHVKNILSKLGVQDRTQAATAAIQRG 203

Query: 245 IV 246
           I+
Sbjct: 204 II 205


>gi|307330474|ref|ZP_07609617.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883899|gb|EFN14942.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 226

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++   L E   LA  
Sbjct: 94  HGDVLEAVKSGATGYLLKSASTEELLDAVRRTAAGDPVFTPGLAGLV---LGEYRRLAGE 150

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A              +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 151 PAPTAADQPAVP----QLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 206

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 207 QLHNRVELVRYAIERGL 223


>gi|260905221|ref|ZP_05913543.1| two component system response regulator [Brevibacterium linens BL2]
          Length = 260

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 5/142 (3%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +    F              + +         +   + ++     ++       +  
Sbjct: 118 PRIIMLTTFDIDDYVFDAIRAGASGFLLKDAPPNELAEAVRVVASGDGLLAPSVTRRV-- 175

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  + A    S         +LT RE E L  ++ G+T+ EIA  L I+  TV  +++ I
Sbjct: 176 IEHFAAGPQTSNAEALP---DLTDREREILVLVARGQTNTEIAATLFIAVQTVKTHVSRI 232

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R+ A+  A  + +V
Sbjct: 233 LYKLDIRDRAQAVIAAYESGLV 254


>gi|312112563|ref|YP_003990879.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217664|gb|ADP76268.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 185

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 43/72 (59%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D        LT  E++ L +ISE +T+ EI+ +L IS+ TV ++++SI+RK    +R 
Sbjct: 113 PADRLSNYHPPLTKVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRV 172

Query: 235 GAIAYAVRNNIV 246
           GA+  A++  I+
Sbjct: 173 GAVVKAMKLGIL 184


>gi|294010458|ref|YP_003543918.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673788|dbj|BAI95306.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 248

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 17/227 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D  A    +    + +  M  +T+ +G  H+ LV   +  +  + S+   D+P D V   
Sbjct: 10  DFCAVAGAIKDATALSDLMAEITKAMGFRHYALVHH-VDLKPAVRSVHIVDYPQDWVERF 68

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA------------ 138
                     + +           +  ++I      D    +  ++              
Sbjct: 69  QARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIP 128

Query: 139 -RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ---ANMFKSYDVHWGKDFELTGREVECL 194
             +          G ++   +L  + L+ ++    A           +   LT R+ EC+
Sbjct: 129 GELNGSCSFAMAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSEWPSLTERQAECV 188

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             ++ GKT  EI+ ILGI + TV  ++     +     R+     A+
Sbjct: 189 ALVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRAL 235


>gi|282862196|ref|ZP_06271259.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563221|gb|EFB68760.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 233

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 7/137 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           LT  V     G  +  P    ++   L E   LA+ 
Sbjct: 101 HADVLEAVKSGATGYLLKSASTQELTDAVRATAAGDPVFTPGLAGLV---LGEYRRLASD 157

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A           K  +LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 158 PAPAA----SDEPKAPQLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 213

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 214 QLHNRVELVRYAIETGL 230


>gi|319795485|ref|YP_004157125.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597948|gb|ADU39014.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 340

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L W+ +GKT+ +I  ILG S  T   ++  +  K   +TR+ A   A++ 
Sbjct: 271 LKLTAREAEVLYWVVKGKTNKDIGEILGSSPATAKKHLERVYVKLGVETRTAAAGVAIKR 330


>gi|293393463|ref|ZP_06637774.1| transcriptional activator protein LasR [Serratia odorifera DSM
           4582]
 gi|291424064|gb|EFE97282.1| transcriptional activator protein LasR [Serratia odorifera DSM
           4582]
          Length = 237

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 17/205 (8%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP---- 111
           +G   +LL      ++    ++V ++ P                  +        P    
Sbjct: 30  IGFDGYLLGVTGHGRDIN-QAVVLTNHPPAWRETYTRLGYINTDPTVAHCLGGLFPLEWQ 88

Query: 112 ----VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG------RIILRDRLWE 161
                  T P              S      +   G++ L          R +++ R  E
Sbjct: 89  ACPITAETAPFWQEASYYGLAHGVSFPLHGVQGEQGILSLSLGRQRQRDYRELMQQRWGE 148

Query: 162 IGLLA-AYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           + +L      +  +  D         L+ RE+E   W + GKT+ EI+ IL  S   VN 
Sbjct: 149 LYILRDILLHHCIRLLDEKNKLTATVLSPREIEVCKWFTIGKTTWEISRILNCSEANVNF 208

Query: 220 YIASIMRKTATKTRSGAIAYAVRNN 244
           +  +I RK    +R  AI  A+ + 
Sbjct: 209 HFKNIRRKFNVSSRGAAIIKAIASG 233


>gi|291295457|ref|YP_003506855.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470416|gb|ADD27835.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 209

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +    +  L+ RE+E L  +++G ++ EIA  L IS  TV  ++     K     R+ A+
Sbjct: 137 MRGTAEETLSVRELEVLALVAKGFSNKEIARELKISEATVKTHLLHTFEKLGVDDRTAAV 196

Query: 238 AYAVRNNIV 246
             A+   I+
Sbjct: 197 TVAIERGIL 205


>gi|220925456|ref|YP_002500758.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950063|gb|ACL60455.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 238

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 41/80 (51%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A Y      +     G +  LT REVE L +++ G ++  IA  L I+  TV  ++ SI+
Sbjct: 149 ATYLLPTPPAAARGLGANETLTEREVEILAYLAAGLSNKLIARRLSIAEATVKIHVKSIL 208

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RKT  + R+ A  +  R+ I
Sbjct: 209 RKTGLQNRTQAAIWTHRHGI 228


>gi|107103438|ref|ZP_01367356.1| hypothetical protein PaerPA_01004508 [Pseudomonas aeruginosa PACS2]
          Length = 906

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLLAAYQANM- 172
            +    G +    +         +G     L  L  +    LR++L         Q    
Sbjct: 769 ALHLEQGREREALATLQQAMEGAVGGALLPLHELLVQQPEWLREQLQRFPACPGAQRMRA 828

Query: 173 ---FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                  +   G    L+GRE+  L  I++G ++ EI+  L IS +TV ++   I  K  
Sbjct: 829 LLPEPPSEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLG 888

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R+ A+A A    ++
Sbjct: 889 VERRTQAVARAKHMGLL 905


>gi|120555999|ref|YP_960350.1| two component LuxR family transcriptional regulator [Marinobacter
           aquaeolei VT8]
 gi|120325848|gb|ABM20163.1| two component transcriptional regulator, LuxR family [Marinobacter
           aquaeolei VT8]
          Length = 219

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 26/184 (14%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC--------------PVFHTLPENIT 121
            + +   P  ++  + + E D     L++  E                  V   L     
Sbjct: 45  RLATELEPDLILMDLNMPEMDG-IEALRKLREQNVSSRIVMFTVSDQEDDVVAALRAGAD 103

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                D     +   + +  +G M++  +   +L + L              K       
Sbjct: 104 GYLLKDMEPEDMIAQLHQAAVGKMVISDRLTTLLAEALRSN-----------KPQQTSRP 152

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE + L  I+EG ++  I   L IS  TV  ++  +++K   ++R     +AV
Sbjct: 153 DFDSLTPREKDILRLIAEGLSNKMIGRKLDISDGTVKVHVKHLLKKLNLRSRVEVAVWAV 212

Query: 242 RNNI 245
              +
Sbjct: 213 EEGL 216


>gi|318057517|ref|ZP_07976240.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318081139|ref|ZP_07988471.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 226

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 6/137 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R  +G  +  P    ++      +G     
Sbjct: 92  HADVLEAVKSGATGYLVKSASTEELIEAVRRTAVGDAVFTPGLAGLV------LGEYRRL 145

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A           +   LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 146 AAEPEPKTSGGGPEAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 205

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 206 QLHNRVELVRYAIEQGL 222


>gi|239816808|ref|YP_002945718.1| LuxR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803385|gb|ACS20452.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 161

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 38/80 (47%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA   A       +       LT RE + + W+S GKT  EIA +L IS  TV+ ++  +
Sbjct: 79  LACRAAVPLHDVPLSDAPLAGLTPREGDVMHWLSRGKTDAEIAALLEISPRTVHKHLEHV 138

Query: 225 MRKTATKTRSGAIAYAVRNN 244
             K   +TR+ A+  A+   
Sbjct: 139 YVKLGVETRTAAVVRALAMG 158


>gi|104780134|ref|YP_606632.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109121|emb|CAK13818.1| putative transcriptional regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 905

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
           H LL      Q+  L+ ++      +    M +        +    + L   +   L E 
Sbjct: 716 HPLLPLHIELQQALLERVLDRPREAEARLRMLVERGQASGGMTLVVSALCQLIGLLLAEG 775

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLML--LFPKGRIILRDRLWEIGLL---AAYQANMFK 174
             P AG   R      + A+         L       LR++L    +    A   A + +
Sbjct: 776 REPEAG---RLLPQALEAAQGGALQAFQRLLEDHPTWLREQLAGQAVSPAQAELLARLPE 832

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +     G    L+GRE+  L  I++G ++ +I+  L IS +TV  + + I  K   + R+
Sbjct: 833 APANDLGATEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINGKLGVERRT 892

Query: 235 GAIAYAVRNNIV 246
            A+A A    ++
Sbjct: 893 QAVARAKSLGLL 904


>gi|330962290|gb|EGH62550.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 222

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144
            M +        +LQ+       V  T+ ++        +     Y         +  GL
Sbjct: 59  RMPVLNGLGAARILQQRMPHLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIAGL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         + A     M +           LT RE + L  ++ G ++ 
Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGASAPEALTPRERQVLGLVAGGFSNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|317126445|ref|YP_004100557.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590533|gb|ADU49830.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 209

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   +I   R    G          +  +        L+GRE++ L  ++EG T+
Sbjct: 106 LLKDAPAADLIDAVRTAARGGTVLSPVVARRLDERRRTPQPTLSGRELDVLRLVAEGGTN 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV +++     K    +R+ A+A A    ++
Sbjct: 166 RDIARALFLSEATVKSHLVHAFGKLGVTSRTAAVATARSRGLI 208


>gi|156743691|ref|YP_001433820.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156235019|gb|ABU59802.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 221

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 68/188 (36%), Gaps = 14/188 (7%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPE 118
           ++V       + L +I+  + P  +V  +A+  +D       + +R   +   +     +
Sbjct: 33  MIVVATATDGESLLAIIERERPDVVVMDLAMPTRDGLSCLREIRRRGMPVKVVILTAFGD 92

Query: 119 NITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                +  + +    +L  D  R  I  +     G+I+    + +             + 
Sbjct: 93  GGALQSAWEMQADGFALKTDPPRQTIATIRNVAHGQIVFPRVVRQAADATQAHGQSLLA- 151

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE + L  ++EG  + +IA  L +  +TV  ++ +I +K     R+ A
Sbjct: 152 --------RLTQRERDVLRLLAEGMPNAQIAERLVVQESTVKYHLQNIFQKLGVTNRTEA 203

Query: 237 IAYAVRNN 244
                R  
Sbjct: 204 AQVYYREG 211


>gi|227112193|ref|ZP_03825849.1| quorum-sensing transcriptional activator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 244

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 31/226 (13%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              ++  + +    S+F++ +    Q       + S++P   ++     E      ++  
Sbjct: 9   IKRKLKGVGDVW-FSYFMMSKNSTSQ-----PYIISNYPEAWMKEYIKKEMFLSDPIIVA 62

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLT----------------FDVARIRIGLMLLF 148
                 P      + +T  A   + + S                   +VA + I   L  
Sbjct: 63  SLARITPFSWDDNDLVTLRAKNQDVFISSVQHDISSGYTFVLHDHDNNVATLSIANHLED 122

Query: 149 PKGRIILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                 +++   ++ +L         A  +A   +       ++  L+ RE E L  +S 
Sbjct: 123 ANFEKCMKNHENDLQMLLVNVHEKVMAYQRAINVQDNPPDNSRNALLSPRETEVLFLVSS 182

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G+T  E++ ILGIS  TV  +I + +RK        AI  A+  N+
Sbjct: 183 GRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|302872826|ref|YP_003841462.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575685|gb|ADL43476.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 216

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 19/184 (10%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD- 127
           F E++   +V  D     +R   +   +  +N+  R   +   +  T  E       +  
Sbjct: 43  FLEKRNADVVLMD-----IRMPVMDGIEGTFNIKVRFPNVRVIILTTFCEEDYIKKSLSF 97

Query: 128 --NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY----DVHWG 181
             + Y   + D   I   +  +     +I ++       +A + AN+FK      +    
Sbjct: 98  GADGYILKSSDAQHIIDTIYAVLDGKVVIDKE-------IALFVANIFKKDLQNVNTTEN 150

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE+E    I++G ++ +I+ +L IS  TV NYI++I+ K   K R+    Y +
Sbjct: 151 KLKNLSERELEIARLIAQGYSNKDISKMLFISEGTVRNYISTILEKLELKNRTQIAIYYL 210

Query: 242 RNNI 245
            N++
Sbjct: 211 SNSL 214


>gi|288923880|ref|ZP_06417961.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288344773|gb|EFC79221.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 222

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 74/223 (33%), Gaps = 15/223 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D        +  + E +    F +V      E+ L        P  ++  + 
Sbjct: 1   MSIRLLIVDDQELVRTGLRLILEAL--DDFEVVGEAGDGEEALAR-AEELRPDVVLLDIR 57

Query: 92  LSEKDKYYN--------VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +   D            ++  P  L    F                +        R+   
Sbjct: 58  MPRMDGVETTARLTGGGLIPAPRVLILTTFDLDEYVFGALRAGAAGFLLKDASRERLVEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +L     ++         L+  + A          G    LT RE E L  ++ G ++
Sbjct: 118 IRVLHAGDALLSPAVTRR--LVETFAARTRPP--TPPGLLDLLTPREREVLVLVARGLSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV +++ +I+ K   + R  A+  A  N +V
Sbjct: 174 TEIAGRLVVTEATVKSHVGAILTKLGLRDRVQAVVLAYENGVV 216


>gi|312960102|ref|ZP_07774614.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311285596|gb|EFQ64165.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 498

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELT 187
           Y  +  ++   +   + L      +++D  W    L    AN     S ++      +LT
Sbjct: 370 YLLVLMNITERKRSELELVAAIEEVMQDASWFSQTLIEKLANAKSVNSPNLPNISYTDLT 429

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A    +
Sbjct: 430 ARERDVLGLICEGLADKEIASRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWARERGL 487


>gi|114217274|dbj|BAF31200.1| AHL-dependent transcriptional regulator [Serratia marcescens]
 gi|172044716|gb|ACB69923.1| SpnR [Serratia marcescens]
          Length = 247

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 7/188 (3%)

Query: 63  LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           L R + FQ    D ++ + +    PF     + L    K+  +             T   
Sbjct: 57  LYRTNNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLKFTKIFSLAKHYNIVNGFTFVL 114

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +                +   +   L       +I+L D   ++  LA   ++  + + +
Sbjct: 115 HDHMNNLALLSVIIANNEQGELEARLTSERGAIQILLIDINEQMYRLAGASSSGRQRHHM 174

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              K    T RE E L W S GKT  EIA I GIS +TV  ++ +I+ K        AI 
Sbjct: 175 DMVKPI-FTPRENEVLYWSSMGKTYGEIAAIAGISISTVKFHMGNIVSKLGVSNARQAIR 233

Query: 239 YAVRNNIV 246
             V   ++
Sbjct: 234 LGVELELI 241


>gi|227547703|ref|ZP_03977752.1| possible response regulator [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227080229|gb|EEI18192.1| possible response regulator [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 212

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 45/103 (43%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   ++   R    G  A  Q    +         F LT RE+E L  ++ G ++
Sbjct: 110 LLKDAPPAELVAAVRSAARGDAALSQVVRTRLETRESTPRFSLTPRELEVLQLVAGGSSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 170 REIGHELMLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGML 212


>gi|218889798|ref|YP_002438662.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218770021|emb|CAW25783.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 906

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLLAAYQANM- 172
            +    G +    +         +G     L  L  +    LR++L         Q    
Sbjct: 769 ALHLEQGREREALATLQQAMEGAVGGALLPLHELLVQQPEWLREQLQRFPACPGAQRMRA 828

Query: 173 ---FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                  +   G    L+GRE+  L  I++G ++ EI+  L IS +TV ++   I  K  
Sbjct: 829 LLPEPPAEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLG 888

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R+ A+A A    ++
Sbjct: 889 VERRTQAVARAKHMGLL 905


>gi|209550247|ref|YP_002282164.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536003|gb|ACI55938.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 241

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 84/234 (35%), Gaps = 27/234 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
               I     V   +R+      +G   + L +      +     V + +P   V    L
Sbjct: 13  AFEQIKAAANVDAAIRILQAEYGLGFVTYHLAQTIAS--KIDSPFVRTTYPDAWVSRYLL 70

Query: 93  SEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIG 143
           +   K   ++++  E   P         PE           G+     S+       R  
Sbjct: 71  NSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRA 130

Query: 144 LMLLFPKG---------RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVE 192
           L+ +  +          R    + +    L+     +    Y++H   D    L+ RE+E
Sbjct: 131 LLSVNARIPVEEWTELVRRCRNEWIEIAHLI-----HRKAVYELHGENDPVPALSPREIE 185

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 186 CLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|40804409|gb|AAR91700.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae]
          Length = 254

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183
           ++   +                    RL E  LL       A+QA   +  D    +   
Sbjct: 130 TVPLHLPGGAFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHH 189

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +  
Sbjct: 190 IPLTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|318059560|ref|ZP_07978283.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079903|ref|ZP_07987235.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 265

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G ++ +IA  L +S  TV  +I ++  K   + R+ A+ YA  + I
Sbjct: 197 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 256

Query: 246 V 246
           V
Sbjct: 257 V 257


>gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 216

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV---LQRPTEL 108
           +++Y+    + +   +  Q+      +  + P  ++  + + E D Y  V    +     
Sbjct: 26  VSDYLELRGYQVTIAENGQKALEK--LEEEVPELIICDIMMPEMDGYTLVKLIRENSQFG 83

Query: 109 FCPVFHTL-----PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           + PV          + +       + Y    FD   +   +     +   + R R   IG
Sbjct: 84  WIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQTERLTRYRKSVIG 143

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                      S  +      ELT  E++ +  +++GK + EI+ I+ +S+ T+ ++I++
Sbjct: 144 ----------TSPKIKVRSGVELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHISN 193

Query: 224 IMRKTATKTRSGAIAYAVR 242
           ++ KT    R+    +A+ 
Sbjct: 194 MLGKTGLHNRTQLARWALE 212


>gi|289425275|ref|ZP_06427052.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289154253|gb|EFD02941.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|313792254|gb|EFS40355.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313838624|gb|EFS76338.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|315078129|gb|EFT50180.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|327453031|gb|EGE99685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
          Length = 218

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 10/176 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V    P  ++  + +   D       ++  +++   +  T   +      +D      
Sbjct: 40  DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99

Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D   +  GL  +     ++  +    +   + +Q +      V   K  +LT RE
Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGST-----VTGSKAEQLTARE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E    ++ G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|284990521|ref|YP_003409075.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063766|gb|ADB74704.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 232

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 8/177 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  + +      L     +    F      +       + +   + 
Sbjct: 50  DVVLMDIRMPGVDGLTAARQIAASPDLSEVRIIVLTTFEADEYVVEALRSGASGFLGKSV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFE-----LTGR 189
           +   +   + ++     ++         L+A + A   +S  D       +     LT R
Sbjct: 110 EPDELLDAIRVVARGDALLSPRATR--SLIARFLAQPGRSGPDPDGPAPVDAALDVLTER 167

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E +  ++ G ++++IA  L +S  TV  ++   M K   + R+  +  A +  +V
Sbjct: 168 EREMVALVAHGLSNEDIAARLHLSPLTVKTHVNRAMSKLRARDRAQLVVLAYQTGLV 224


>gi|315501316|ref|YP_004080203.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315407935|gb|ADU06052.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 225

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 10/147 (6%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            +   L   V     + I         Y + T     +   +  +     +         
Sbjct: 86  PQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPEELTDAIRRVADGDAVFSP------ 139

Query: 163 GLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             LA +  + F S       D EL   T RE E L  ++ G    EIA  L IS  TV  
Sbjct: 140 -RLAGFVLDAFASRPDAPVADPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVET 198

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++RK     R     +A    +V
Sbjct: 199 HVSNVLRKLQMSNRYELSRWAADRRLV 225


>gi|258513942|ref|YP_003190164.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777647|gb|ACV61541.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 824

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 11/133 (8%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLL-FPKGRIILRDRLWEIGL----------LAAYQANMF 173
           GM+    +L   +   R   ++L F +    + D L  I            L     +  
Sbjct: 692 GMEKGCAALAEAIGMGRADHLILPFAEYAPEMIDMLRHIAQNNSGDGYIIELLEACEHYI 751

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S          LT RE+E LT  +EG   +EIA  L +S  TV  ++A+I RK     R
Sbjct: 752 ESLSRAPESTVTLTERELEVLTLAAEGLRRNEIAARLYVSGTTVKTHLANIYRKLEVGGR 811

Query: 234 SGAIAYAVRNNIV 246
           + A+  A +  I+
Sbjct: 812 TAAVKKAGKLKII 824


>gi|28869333|ref|NP_791952.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28852574|gb|AAO55647.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|330878542|gb|EGH12691.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|331019215|gb|EGH99271.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 222

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144
            M +        +LQ+       V  T+ ++        +     Y         +  GL
Sbjct: 59  RMPVLNGLGAARILQQRMPGLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIDGL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         + A     M +           LT RE + L  ++ G ++ 
Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGASVPEALTPRERQVLGLVAGGFSNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|323357435|ref|YP_004223831.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323273806|dbj|BAJ73951.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 216

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 4/156 (2%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+   +     + P  +    F              + +     +   +   +  +   
Sbjct: 65  GLTATAEILREPEAPRVVVLTTFDLDEAAARAIQRGASGFLLKDSEPEFLLSAIRTVHAG 124

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I  +   E  L A    N   S +       ELT RE E     + G ++ EIA   
Sbjct: 125 SAVIAAEATRE--LFAHIAENG--SAEPVPASFGELTEREREIFLLAAAGLSNSEIAARE 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  TV  +I+ I+ K + + R   + +A R+ +V
Sbjct: 181 FLSEATVKTHISRILAKLSLRDRVQLVVFAYRHGLV 216


>gi|319950310|ref|ZP_08024229.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
 gi|319436002|gb|EFV91203.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
          Length = 250

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 5/144 (3%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI----- 162
           L    F              + +     D   +  G+  +     ++  +    +     
Sbjct: 103 LILTTFDRDDYLFDALRAGASGFLLKNSDPDDLVDGIRAVGHGHALLAPEVTRRVIERLA 162

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
               A  A           +   LT RE E L  ++ G ++ EIA  L +   TV  +++
Sbjct: 163 APPPADDAPDAGRPGPRASELAGLTARETEVLRLVARGLSNAEIADELVVGEATVKTHVS 222

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S + K   + R  A+  A    +V
Sbjct: 223 SCLAKLHLRDRVQAVVLAYEVGLV 246


>gi|297154023|gb|ADI03735.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 226

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 2/170 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  + +      L+    L    + T              +     
Sbjct: 46  DVVIMDIRMPEVDGLTATSEICADPELRASRILILTTYETDEYVAQALRAGAGGFIGKGI 105

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++         L+A + A    +   H  +   LT RE E + 
Sbjct: 106 GAEDLLDAVRTIADGDTLLSPAATR--SLVARFLATPDDTPSHHPEQLAVLTPREREMVA 163

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ G ++ EIA  + +S  TV  ++   M K   + R+  +  A R  +
Sbjct: 164 LVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTGL 213


>gi|239929933|ref|ZP_04686886.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438267|ref|ZP_06577657.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341162|gb|EFE68118.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 221

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 50/123 (40%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++  G+ ++     ++       +    +  +   +         
Sbjct: 96  RAGASGFLLKDASARQLADGVRVVASGEALLAPSVTRRLITEFSKLSETPRLMPSAQAAY 155

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A   
Sbjct: 156 GDLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 215

Query: 244 NIV 246
            +V
Sbjct: 216 RLV 218


>gi|307329696|ref|ZP_07608853.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306884636|gb|EFN15665.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 231

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 2/170 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +A + +      L+    L    + T              +     
Sbjct: 50  DVVLMDIRMPEVDGLAATTEICADPELRASRILILTTYETDEYVAQALRAGAGGFIGKGI 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++         L+A + A    +   H  +   LT RE E + 
Sbjct: 110 GAEDLLAAVRTIADGDTLLSPAATR--SLVARFLATPADAPPRHAERLSVLTPREREMVA 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ G ++ EIA  + +S  TV  ++   M K   + R+  +  A R  +
Sbjct: 168 LVATGLSNQEIAEQMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTGL 217


>gi|288959032|ref|YP_003449373.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911340|dbj|BAI72829.1| two-component response regulator [Azospirillum sp. B510]
          Length = 228

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
            +L               SL   +  + +G ++       +L   + E     +    M 
Sbjct: 93  QSLKAGADAYLNKSMSSESLLRSLRLVMLGEVVYPTHVAGLLMAAVNERPQHGSAYGPMP 152

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
               +      EL+ REV+ L  +  G+++  IA  L I+ +TV  +  ++MRK   + R
Sbjct: 153 GPIGMPTSG--ELSKREVQILRCLLAGQSNKAIARNLHITESTVKMHFKNVMRKINAQNR 210

Query: 234 SGAIAYAVRNNI 245
           + A  +A++N +
Sbjct: 211 TQAAVWAIQNGL 222


>gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
 gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
          Length = 252

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 11/191 (5%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
           W   QE  +  +V SD     +    L ++ +    L     +F        + I     
Sbjct: 62  WTAAQE-LIPDLVISDVMMPRLDGYGLLKRLRGDERLGGTPVIFLTAKGMTADRIEGFQA 120

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFK------S 175
             + Y    FD   +   +  +  +   +L +       +IG +A     +        S
Sbjct: 121 GVDDYIPKPFDPDELVARVRNVVRRQERLLAEAARYADADIGQMARQITEIRSLLQQTGS 180

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +          T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+ 
Sbjct: 181 HKSATPATHSFTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFTKTGTTSRTE 240

Query: 236 AIAYAVRNNIV 246
            + YA+ N +V
Sbjct: 241 LVRYALENGLV 251


>gi|332712354|ref|ZP_08432281.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332348828|gb|EGJ28441.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 243

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K     R+ A   A+R+
Sbjct: 180 YPLTERELEVLRLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRS 239

Query: 244 NIV 246
            +V
Sbjct: 240 GLV 242


>gi|315648982|ref|ZP_07902076.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315275663|gb|EFU39017.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 217

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              +  G +  LT RE E L  I+EG+++ EI   L IS  TV  ++++++ K     R+
Sbjct: 144 RRHMVNGDESGLTEREKEVLLLIAEGRSNKEIGEELHISIKTVKTHVSNLLMKCELDDRT 203

Query: 235 GAIAYAVRNN 244
               YA R  
Sbjct: 204 QLAIYAHRKG 213


>gi|284030612|ref|YP_003380543.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809905|gb|ADB31744.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 227

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 4/139 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    F              + +         +   + ++     ++  +    +    A
Sbjct: 85  VILTTFDRDDYLFESLGAGASGFLLKNTAPEDLVEAIQVVHSGHALLAPEVTRRVIKRFA 144

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                    D+      ELT RE E L  I+ G T+ EIA  L +   TV  +++ ++ K
Sbjct: 145 GGGERVYRPDLVA----ELTDREREVLGLIARGLTNTEIAGQLFVGEATVKTHVSRVLLK 200

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R  A+ +A    +V
Sbjct: 201 LGLRDRVQAVVFAYECGLV 219


>gi|224552987|gb|ACN54744.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-----IGLLAAYQANMFKSYDVH-WG 181
           N Y   TF +      L+LL    +      + +     I  L          Y  H   
Sbjct: 84  NIYQGRTFPLHDYLNNLVLLSVISQKDSDFNIEKYREKFISFLTNLHQKTLNLYSQHNQK 143

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE + L W+S GKT  E+++IL I+  TV  ++ ++M+K        A+    
Sbjct: 144 KNVFLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVMKKLGVNNARHAVKLGA 203

Query: 242 RNNIV 246
              ++
Sbjct: 204 ELQLL 208


>gi|298248552|ref|ZP_06972357.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551211|gb|EFH85077.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 226

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 10/211 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +   +   + M    E VG +   +    L  E   D +V        VR  A+   +  
Sbjct: 16  VRTGLRMMLGMEERIELVGEAVDGVAAIHLVSELVPDVVVMD------VRMPAMDGLEAI 69

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
             +  +   +   V  T  E+      +      Y     DV  +   +        ++ 
Sbjct: 70  EQIRAQFPHIAIIVLTTYDEDELMLRSLQAGARGYLLKESDVEVVLQAIERAARGEMLVQ 129

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            + +  +   AA + +           + +LT RE E L+ ++ G+ + EI   LGI+R 
Sbjct: 130 PETIRRVLDYAARR-SASALLPAGSIHEVQLTEREQEVLSALAAGERNKEIGARLGITRR 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +Y+ S+  K    +R+ A+  A+   ++
Sbjct: 189 TVESYLNSLYAKLNVDSRAAAVMVAIERGLL 219


>gi|329944904|ref|ZP_08292931.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529715|gb|EGF56611.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 240

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 8/221 (3%)

Query: 32  LLARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +  R+I +D    + +    L       E VG +       DL  E+    IV  D    
Sbjct: 1   MTLRLILVDDQEMYRLGFRMLLETQEGVEVVGEAEDGRAAVDLI-ERVEADIVLMDVRMP 59

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  +  +           P  +    F              + +      +  +   + 
Sbjct: 60  RMNGIEATRTITRG-GAGGPRVIVLTTFDLDEYAYEAIRAGASGFLLKDASLEELMAAIH 118

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++       +    A    +    D  +    +LT RE E L  ++ G +++ 
Sbjct: 119 HVHGGDAVMAPSTTRRLIEHFALPPPVVDDGDDRFRALADLTAREREVLARVARGLSNEA 178

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L ++  TV  +++ I+ K   + R+ A+  A  + +V
Sbjct: 179 IAHDLCVAEGTVRVHVSRILGKLGLRDRAQAVVLAYESGLV 219


>gi|298245529|ref|ZP_06969335.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553010|gb|EFH86875.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 237

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 67/177 (37%), Gaps = 12/177 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNR 129
            +  +  P  L+  + +   D    + +      +   +    +      +   +   + 
Sbjct: 62  ELAETYKPDVLLMDVQMPRMDGIEALRRIKEEWPQIRVILLSAYTVDERVLEGLSAGASG 121

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +   +  ++   ++I       +  L  Y+  + +   +  G    LT R
Sbjct: 122 YLLKDSSAEGVVAAIRAVYAGEQVITSRISRRMMQL--YEQGLVEKEPIGEG----LTSR 175

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  I+ G    EIA  + ++  TV N+I++I RK     RS  + YA++  ++
Sbjct: 176 EIEVLLRIARGMVPKEIAQAIAVTEKTVRNHISNIYRKLNIYDRSQIVIYAIKKGLI 232


>gi|237880797|gb|ACR33055.1| response regulator [Actinoplanes garbadinensis]
          Length = 231

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 80/224 (35%), Gaps = 12/224 (5%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
               ++  ++ +D     ++ +  + E  G   F +   D    + L S V    P  ++
Sbjct: 6   RGGPIVTDVLVVDGEALVSIGIKMILESTG--GFAVATTD---RENLRSAVEQHRPAVVL 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY------CSLTFDVARIR 141
                ++ D    VL +   L  P    +   + PP  + +          L        
Sbjct: 61  LDGHSAQSDG-LEVLDQLRALSSPPAIAMLTTLAPPELVLDSLRGGACGFLLRDSQPEQL 119

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +  +    +G I+L      + + A  + +   +      +  +L+ RE   L  +  G 
Sbjct: 120 VAAVRALAEGSIVLAPEASSVVVRAGSRGSAAGAGSPACERVKQLSDREQSILRLLGAGL 179

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T+ EI+  L +S  TV  +++ I+ K     R  A   A  + +
Sbjct: 180 TNAEISRQLFLSAATVKEHVSVILSKLGVANRVQAAVLAYASGL 223


>gi|227502186|ref|ZP_03932235.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227077010|gb|EEI14973.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 205

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 16/177 (9%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
            +     +V  D     V  +  +   K       P  L    + T  + +         
Sbjct: 45  DDAPEVDVVVCDIQMPGVDGITAT---KKVTEAGGPPVLILTTYDTQADILAAVEAGAMG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +   ++    + R +  +    + LLA                +  L+ R
Sbjct: 102 YLLKDSPEEELHEAVLNTAARRRTLAPEV---VNLLAQRVGQ----------PEQSLSTR 148

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  ++ G ++ E+A  L IS  TV  ++  I +K    TR+ A+  A    ++
Sbjct: 149 ELEILRALATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205


>gi|260777127|ref|ZP_05886021.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606793|gb|EEX33067.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 206

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201
           + LL      I++D +W    +A      F+  +          LT RE E +  +  G 
Sbjct: 98  ISLLLKGMEKIMQDEMWLSRKVAQDYIEHFRCANSVTTSQAYANLTKREKEIMRLLGHGA 157

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A
Sbjct: 158 SNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 196


>gi|255642661|gb|ACU21562.1| AhyR/asaR [Aeromonas hydrophila]
          Length = 88

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE+E   W +EGK   +IA ILGI+  TV  ++ +++ K    ++S AI++
Sbjct: 6   LSPHDALSLRELEVCRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISW 65

Query: 240 AVRNNIV 246
           A++  +V
Sbjct: 66  ALKQGMV 72


>gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 226

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 17/210 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTE 107
           A+  Y+  S F +      Q      ++    P  ++  + + + D Y     +   P  
Sbjct: 17  AVQAYLEDSGFSVAAAPNAQAGW--ELLQQQTPDLVITDIMMPQVDGYQFLQQLRDDPRY 74

Query: 108 LFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV       +T           + Y +  FD   +   +  +  +           +
Sbjct: 75  SRLPVVFLTARGMTKDRIQGHNAGVDAYLAKPFDPDELVAIVKNILRQRTNQQSSESTNL 134

Query: 163 GLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTWISEGKTSDEIAVILGISRN 215
             LA+  A +          +        +LT RE   L  +++G  + EIA  L  S  
Sbjct: 135 ADLASQIAEIRSILTKQNALERNITPIKIDLTPREQSVLDLVAQGLMNKEIARHLNTSVR 194

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  Y++ +  KT T +R+  + +A+ + +
Sbjct: 195 NIEKYVSRLFSKTGTNSRTELVRFALEHGL 224


>gi|118471623|ref|YP_884743.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172910|gb|ABK73806.1| transcriptional regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 395

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  ELT RE E L  +  G ++ EIA  L I+  TV +++  I+RK     R+ AI
Sbjct: 329 ARPPHRVELTERESEVLRLMVTGASNHEIAEQLVITEGTVKSHVKHILRKYGAVNRAQAI 388

Query: 238 AYAVR 242
           A+A++
Sbjct: 389 AWALQ 393


>gi|84496768|ref|ZP_00995622.1| putative respose regulatory protein [Janibacter sp. HTCC2649]
 gi|84383536|gb|EAP99417.1| putative respose regulatory protein [Janibacter sp. HTCC2649]
          Length = 217

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  +        L+ RE E L  + EG ++DEIA  L ISR TV  ++  +  K    +R
Sbjct: 144 RVVETMRVGQRPLSEREREVLVLVGEGLSNDEIAKQLFISRATVKTHLRHLFGKLEADSR 203

Query: 234 SGAIAYAVRNNIV 246
           +GA+A A R  ++
Sbjct: 204 TGAVATARRLGLI 216


>gi|330005638|ref|ZP_08305316.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
 gi|328536204|gb|EGF62585.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
          Length = 841

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+ A++ A+   
Sbjct: 779 ELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEMK 838

Query: 245 IV 246
           ++
Sbjct: 839 LL 840


>gi|269797048|ref|YP_003316503.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269099233|gb|ACZ23669.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 221

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 3/172 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +A +E+            L    F      +       + +     
Sbjct: 48  DVVLMDIRMPGLDGIAATEQICAGPAGSTTRVLVLTTFEEDEYVVAALRAGASGFIGKGA 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECL 194
           +   I   +  +     ++         L+  Y        D   G     LT RE E  
Sbjct: 108 EPDDIVRAVRTVHLGESLLSSAATR--ALVERYVHQQAPRADAWEGDGLGRLTEREREVF 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G+T+ +IA  L IS +T   ++  IM K   + R+  +  A  + +V
Sbjct: 166 LLVAAGRTNQDIAAELVISTHTAKTHVNRIMTKVDVRDRAHLVILAYESGLV 217


>gi|222081230|ref|YP_002540593.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725909|gb|ACM28998.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 897

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 138 ARIRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            R    L        ++++  +RL ++   A+ Q +      V       LT RE   L 
Sbjct: 788 GRRLCQLAASRGVPDVVMQRLERLQDVVAGASAQDSDL--LSVPTAATGGLTDRERSVLR 845

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S G ++ EI   L +S NTV  ++ +I  K    TR+ A+  A    I+
Sbjct: 846 LLSAGLSNKEIGRKLDLSNNTVKFHLRNIYAKLNVTTRTAAVTMARDTGIL 896


>gi|34496978|ref|NP_901193.1| nitrate/nitrite response regulator protein [Chromobacterium
           violaceum ATCC 12472]
 gi|34102834|gb|AAQ59198.1| nitrate/nitrite response regulator protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 212

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 75/218 (34%), Gaps = 10/218 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R+  +D        +  L E  G    +L   D  +  +  + V  D     VR   +
Sbjct: 1   MIRVGVVDDQALVRSGVRGLLELTGDIQVVLEAADGAEALERLAGVRPDVLLLDVRMPGM 60

Query: 93  SEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           S  D    +  R   P  +    F      +         +      + R+   +     
Sbjct: 61  SGIDLLRALNDRGCLPPTILLTTFDDDEALLAGMRVGARGFLLKDISLERLADAV----- 115

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             R    + L+  GL       +    D         LTGREVE L  ++ G  + EIA 
Sbjct: 116 -RRAAAGETLFRPGLTERVLDGVRGCGDFPKLDLPERLTGREVEVLALMAGGFNNREIAD 174

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LG S  T+ N+++SI+ K   + R  A+   +    +
Sbjct: 175 ALGPSEGTIKNHVSSILSKLGVRDRVRAVLRGLELGYI 212


>gi|289678344|ref|ZP_06499234.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
          Length = 213

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 13/164 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L+  +A++++        R  E    +  +LP          +    + F   +  IG
Sbjct: 61  AKLLGLIAMTQQIGLLLSQARCDEARALLLRSLP--------AASGGALIPF---KALIG 109

Query: 144 LMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
               +   +++ L     +  LL    A    S +   G D  L+ RE+  L  I++G +
Sbjct: 110 EHPRWLHEQLLHLPPCRVQAALLEKLPACCTPSPEPAHGGDC-LSVRELGVLQLIAQGCS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI+  L IS +TV  + + I  K   + R+ A+A A    ++
Sbjct: 169 NQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGLL 212


>gi|254444586|ref|ZP_05058062.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198258894|gb|EDY83202.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 200

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              +V   KD  LT RE E L  I+EG ++ EIA  LG+S  TV+N+  ++MRK      
Sbjct: 123 NPTNVQRSKDT-LTEREREVLQMIAEGHSTKEIAKKLGLSVKTVDNHRTNMMRKLDLHNV 181

Query: 234 SGAIAYAVRNNIV 246
           +    YA++N ++
Sbjct: 182 ASITRYAMQNGLI 194


>gi|182415045|ref|YP_001820111.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842259|gb|ACB76511.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 209

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 13/160 (8%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +R   +S     + +      +   V+            +               + L  
Sbjct: 60  LRMQGMSGVQTLHALRAEFGAVRVLVYSNYARGEEVYQAIKAGAAGFVV----KEMALDR 115

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R++     +    +AA  A    +          L+ RE+E L  +++G ++ EI
Sbjct: 116 LLEAIRVVNSGGQYIPEQVAARIAERLLA---------GLSPREMEVLKLLAKGLSNKEI 166

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  LG+   T+  Y+A+I  K     R+ A+  AV+  I+
Sbjct: 167 ATQLGLVVGTIKIYVANIFNKLGVSDRTQALVTAVKRGII 206


>gi|120612175|ref|YP_971853.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120590639|gb|ABM34079.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 353

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE E L W+ +GKT+ +I  ILG S  TV  ++  +  K   +TR+ A   A+  
Sbjct: 284 FRLTAREAEVLYWLLKGKTNRDIGDILGSSPATVKKHLERVYVKLGAETRTAAAGIAMAR 343


>gi|330468676|ref|YP_004406419.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328811647|gb|AEB45819.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 227

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  + +         P  L    F T  +         + +     
Sbjct: 50  DVVVMDIRMPTMDGVEATRRLCADRPAGPPRVLVLTTFDTEADAFAALRAGASGFLLKNV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + ++     ++       +    A Q       D       +LT RE E L 
Sbjct: 110 PPEELLAAIRVVAQGDSVVAPSITRRLLDRFAGQLGTTPGEDPRLA---QLTEREREILL 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G  + EIA  + ++  TV  ++  I+ K   + R  A+  A  + +V
Sbjct: 167 LVAQGLANAEIAERVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESGLV 217


>gi|315502130|ref|YP_004081017.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315408749|gb|ADU06866.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 220

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 74/218 (33%), Gaps = 13/218 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++ +D        + AL +       VG +        + +EQ+ D IV  D       
Sbjct: 5   RVVLVDDQHLVRTGLRALLDRAPDIEVVGEAGDGGSGLSVVREQRPD-IVLMDVRMPGGD 63

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +  + +     +L     +    F                +         +R  +  + 
Sbjct: 64  GLEATRRILTDPMLDGVQVVMLTTFDDDEYLFEAIRAGAAGFLLKDTPPDALRDAVRTVA 123

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                   D L    +     A   +S     G+   LT RE + L  +  G+++ EI  
Sbjct: 124 GG------DALLSPAVTRRVLAAAARSPVADPGRLAGLTARERDVLAQVGAGRSNAEIGQ 177

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S +T   Y++ +++K   + R+  +  A  + +V
Sbjct: 178 ALFLSPDTARTYVSRLLQKLNARDRAQLVVIAYESGLV 215


>gi|254819243|ref|ZP_05224244.1| response regulator receiver domain-containing protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 211

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L   +                LT RE E L ++++G ++ +IA+ L +S  TV N++ + 
Sbjct: 127 LVLGEYRRIAQSKDDGPARPSLTERETEVLRYVAKGLSAKQIAMKLSLSHRTVENHVQAT 186

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
            RK     R     YA+ + +
Sbjct: 187 FRKLQVANRVELARYAIEHGL 207


>gi|238791898|ref|ZP_04635535.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
 gi|238729002|gb|EEQ20519.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
          Length = 245

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 78/228 (34%), Gaps = 41/228 (17%)

Query: 59  SHFLLVRWDLFQEQKLDSIVS-----------SDWPFDLVRCMALSEKDKYYNVLQRPTE 107
            +++  R   + + +   +V            S++P D V+    +       V+    +
Sbjct: 16  KNYIQRRIKAYGDLRYSYLVMNKKTPLHPTIISNYPMDWVQTYKRNNYHLIDPVILTAKD 75

Query: 108 LFCPVFHTLPENITPPAGMD-------------NRYCSLTFDVARIRIGLMLLFPKGRII 154
              P F     ++      D             N Y  +  D       L +       I
Sbjct: 76  KVAP-FAWDDNSVINIKSTDSAVFNLAREYNIINGYTFVLHDNNNNMATLNISNGSDDSI 134

Query: 155 LRDR--------------LWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWIS 198
             D               L    +L  Y  N  K+ ++    G+    + RE E L W S
Sbjct: 135 SFDESIETNKEKIQMLLILTHDKMLGLYHKNNNKNNELNGVGGEREIFSPRENEILYWAS 194

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  E+++ILGI R+TV  +I +++RK        AI   +   ++
Sbjct: 195 VGKTYSEVSIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242


>gi|298490276|ref|YP_003720453.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298232194|gb|ADI63330.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 240

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + + LT RE+E L  I  G ++ +IA  L I+  TV  ++ +I+ K     R+ A   A+
Sbjct: 175 ETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 234

Query: 242 RNNIV 246
           R+ +V
Sbjct: 235 RSGLV 239


>gi|17231260|ref|NP_487808.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75907780|ref|YP_322076.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|3603297|gb|AAC82626.1| two-component response regulator OrrA [Nostoc sp. PCC 7120]
 gi|17132902|dbj|BAB75467.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75701505|gb|ABA21181.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 240

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + + LT RE+E L  I  G ++ +IA  L I+  TV  ++ +I+ K     R+ A   A+
Sbjct: 175 ETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 234

Query: 242 RNNIV 246
           R+ +V
Sbjct: 235 RSGLV 239


>gi|254242610|ref|ZP_04935932.1| hypothetical protein PA2G_03368 [Pseudomonas aeruginosa 2192]
 gi|126195988|gb|EAZ60051.1| hypothetical protein PA2G_03368 [Pseudomonas aeruginosa 2192]
          Length = 906

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLLAAYQANM- 172
            +    G +    +         +G     L  L  +    LR++L         Q    
Sbjct: 769 ALHLEQGREREALATLQQAMEGAVGGALLPLHELLVQQPEWLREQLQRFPACPGAQRMRA 828

Query: 173 ---FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                  +   G    L+GRE+  L  I++G ++ EI+  L IS +TV ++   I  K  
Sbjct: 829 LLPEPPAEPAGGAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLG 888

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R+ A+A A    ++
Sbjct: 889 VERRTQAVARAKHMGLL 905


>gi|255535518|ref|YP_003095889.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
 gi|255341714|gb|ACU07827.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
          Length = 218

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 3/117 (2%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + + T D       L  +      +  D       L  +  N+ +  +    +  ELT R
Sbjct: 104 FLTKTADSKEFVFALKEVLAGKVYLTEDT---KTALYNFICNVEQIEEHDPSRLEELTVR 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I EG  + EIA  L IS +TV ++  +IM+K   ++ S  + +A+ NN+V
Sbjct: 161 EKEVLHHICEGLRTREIADELFISPHTVESHRRNIMQKLDVRSSSMLVKFAMNNNLV 217


>gi|226304519|ref|YP_002764477.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183634|dbj|BAH31738.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 220

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + +R            V +++P   V  +   + D+Y             VF  L     
Sbjct: 53  MDIRMPHGDGLTATREVLAEFPATRVVVITTFDLDEY-------------VFEALDSGAA 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                D     L+  V        L   +G  +L  RL    ++   +           G
Sbjct: 100 GFLLKDADPEELSSAV--------LTVAEGGSVLSPRLTSRLIVEFARRKPAPMSTARSG 151

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  L+ RE++ +  +S+G  +++IA  L + ++TV ++I++I +K   +TR   + +A 
Sbjct: 152 SDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWAY 211

Query: 242 RNNIV 246
           RNN++
Sbjct: 212 RNNVI 216


>gi|300857740|ref|YP_003782723.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685194|gb|ADK28116.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302330034|gb|ADL20228.1| Response regulator [Corynebacterium pseudotuberculosis 1002]
          Length = 221

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 8/132 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D     L   V  +     ++ P     L  R+       + Q +
Sbjct: 96  VMEAVENGASGFLLKDTAPEELIEAVRSVGEQSAVISPAATAKLFRRIR------SGQTD 149

Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                  H  +D    LT RE+E L  I+ GK++ EIA  L IS  TV  ++  ++ KT 
Sbjct: 150 KKPDGLKHINEDLIEPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTG 209

Query: 230 TKTRSGAIAYAV 241
           ++ R  A+ +A 
Sbjct: 210 SRDRVHAVLFAF 221


>gi|182413538|ref|YP_001818604.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840752|gb|ACB75004.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 301

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 5/145 (3%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF----PKGRIIL 155
             +QR  E    V     + I   +       +  F        ++ L     P G  + 
Sbjct: 148 REVQRVLERGLIVI-GAKDEILFASDRARTLLTRHFPGVTGSRVVLALLTGELPAGLKLS 206

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                    L  +   + ++          LT RE E L W+++GKT+ EI  ILG +  
Sbjct: 207 APADRTTRPLVVHLDEVPRAASPAQLAPLGLTPRETEILFWVAQGKTNAEIGTILGAAPA 266

Query: 216 TVNNYIASIMRKTATKTRSGAIAYA 240
           TV  ++ +++ K   +TR  A   A
Sbjct: 267 TVKKHVENLLPKLGVETRLAAALRA 291


>gi|291009185|ref|ZP_06567158.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 227

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA  L I   TV  ++ +++ K   + R+ A+ +A  +  
Sbjct: 163 LTEREAEVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGF 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|288918024|ref|ZP_06412382.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350542|gb|EFC84761.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 282

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 38/67 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             + F L+ RE++ L  ++EG ++ E A  L +S  TV  Y+ SIM K     R+ A+  
Sbjct: 215 RAQPFGLSPRELDVLRLVAEGMSNAETARRLAVSPETVKAYLRSIMNKLGVHNRTAAVNV 274

Query: 240 AVRNNIV 246
           A R++++
Sbjct: 275 ARRSSLL 281


>gi|270264188|ref|ZP_06192455.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13]
 gi|270041837|gb|EFA14934.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13]
          Length = 249

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 25/197 (12%)

Query: 63  LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVF 113
           L R + FQ    D ++ + +    PF     + L    K+  +     +      F  V 
Sbjct: 57  LYRANNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLKFTKIFSLSKQYNIINGFTFVL 114

Query: 114 HTLPENITP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
           H    N+       A              R  + ++L+       + ++++    LA   
Sbjct: 115 HDHMNNLALLSVIIANNGQEELEKRLSSERGAMQMLLID------INEQMYR---LAGAA 165

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           ++  + Y     K    T RE E L W S GKT  EIA I GIS +TV  ++ +I+ K  
Sbjct: 166 SSSNQKYHTDADKPI-FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLG 224

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI   V   ++
Sbjct: 225 VSNARQAIRLGVELELI 241


>gi|255019078|ref|ZP_05291204.1| two-component response regulator [Listeria monocytogenes FSL
           F2-515]
          Length = 64

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 1   ILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 54


>gi|152982513|ref|YP_001353581.1| LuxR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151282590|gb|ABR91000.1| transcriptional regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 313

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 8/131 (6%)

Query: 105 PTELFCPVFHTLPENITPPAG--MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                   F   PE +T P      +    L   V       +L+    R +    + EI
Sbjct: 167 CARQLLTQFGIDPEALTVPQSWWKGSSGMELVASVTEPAGASLLV----RNMGAAGMDEI 222

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            LL     N   +          LT RE E L+W+++GKT+ +I  IL +S  TV+ ++ 
Sbjct: 223 MLLIELSGN--HALPTGRLASAALTPRETEVLSWLAKGKTNRDIGEILKMSPRTVSKHLE 280

Query: 223 SIMRKTATKTR 233
            I  K   +TR
Sbjct: 281 HIFEKLGVETR 291


>gi|118473768|ref|YP_890456.1| two-component system, regulatory protein [Mycobacterium smegmatis
           str. MC2 155]
 gi|118175055|gb|ABK75951.1| two-component system, regulatory protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 216

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A + +S         +LT RE+E L  ++ G ++++I   L IS  T   ++++IMRK 
Sbjct: 139 AAAVVRSLSGRTEPREQLTDREIEVLRLLAAGLSNNKIGEKLFISATTAKFHVSNIMRKL 198

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+  A +  ++
Sbjct: 199 DVSRRAEAVYAASKRGLI 216


>gi|159039748|ref|YP_001539001.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157918583|gb|ABW00011.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 270

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE++ L  ++EGK++ EI   L +S +TV  +   + RK   + R+ A+A   R 
Sbjct: 207 VGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRA 266

Query: 244 NIV 246
            +V
Sbjct: 267 GLV 269


>gi|330975620|gb|EGH75686.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 704

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 13/164 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L+  +A++++        R  E    +  +LP          +    + F   +  IG
Sbjct: 552 AKLLGLIAMTQQIGLLLSQARCDEARALLLRSLP--------AASGGALIPF---KALIG 600

Query: 144 LMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
               +   +++ L     +  LL    A    S +   G D  L+ RE+  L  I++G +
Sbjct: 601 EHPRWLHEQLLHLPPCRVQAALLEKLPACCTPSPEPAHGGDC-LSVRELGVLQLIAQGCS 659

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI+  L IS +TV N+ + I  K   + R+ A+A A    ++
Sbjct: 660 NQEISEQLFISLHTVKNHASHINNKLGVERRTQAVARAKTLGLL 703


>gi|229008966|ref|ZP_04166312.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228752300|gb|EEM01982.1| Response regulator receiver [Bacillus mycoides Rock1-4]
          Length = 215

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I+ GK + EIA IL IS   V  ++ +I +K     R+ A+   +   
Sbjct: 153 PLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGICMQ 212

Query: 245 IV 246
           +V
Sbjct: 213 LV 214


>gi|302184842|ref|ZP_07261515.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|330954520|gb|EGH54780.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 222

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144
            M +        +LQ+       V  T+ ++        +     Y         +  GL
Sbjct: 59  RMPVLNGLGAARILQQRMPDLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIDGL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         + A     M +           LT RE + L  ++ G ++ 
Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|260461687|ref|ZP_05809933.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319785241|ref|YP_004144717.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032328|gb|EEW33593.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317171129|gb|ADV14667.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 241

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 21/229 (9%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            + L ++      V     M +    +    F          +K    + S++P      
Sbjct: 6   ENFLEQLSESVDAVDLCETMASAAAALDFPLFAYFSCPSASGRKPR--LISNYPPSWTSR 63

Query: 90  MALSEKDKYYNVLQRPTEL-------FCPVFHTLPENITPPAGMDNRY-----CSLTFDV 137
                  ++  V+ R  +               LP           R+      +++   
Sbjct: 64  YMQLRYHRHDPVILRGLQGWDTFDWGVDLARQHLPAAQQRILEEAARFGIRCGLTMSMHD 123

Query: 138 ARIRIGLMLLFP--KGRIILRD--RLWEIGLLAAYQANMFKSYDVHWG---KDFELTGRE 190
            R R   + L        +LR   R  +   L A   ++F    +          LT RE
Sbjct: 124 HRGRFAALTLASDQSRPPLLRSLSRYEQALQLVAISFHIFARRRLAEDCVVDGVILTPRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ECL W ++GK++ +I+ IL +S+ TV  ++ +   K   +T + A+A 
Sbjct: 184 FECLKWAADGKSAWDISQILSVSKRTVTFHLENAKAKLGVRTINQAVAR 232


>gi|254417388|ref|ZP_05031130.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420]
 gi|196175823|gb|EDX70845.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420]
          Length = 94

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 40/64 (62%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I++KT T  R   + +A
Sbjct: 7   DKSVSLSDRELQIVDLVAAGLTNQEIAQDLEISKRTVDNHISNILQKTHTDNRVALVRWA 66

Query: 241 VRNN 244
           ++  
Sbjct: 67  LQWG 70


>gi|330821495|ref|YP_004350357.1| Response regulator, NarL-family protein [Burkholderia gladioli
           BSR3]
 gi|327373490|gb|AEA64845.1| Response regulator, NarL-family protein [Burkholderia gladioli
           BSR3]
          Length = 236

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   L    T     +     +   +  +  G   + P     + +        AA  A+
Sbjct: 101 IVGALQAGATGYLLKERDDIEIALSIRSVLRGGAPIDPFVARHILETTVHAAPAAATPAS 160

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                  +      L+ RE+E L  +S+G T+ EI+ +L +SR TV  +I +I +K A +
Sbjct: 161 PGLLPSRNGAPPVRLSRREIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVR 220

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A+  A  + ++
Sbjct: 221 SRTQAVFEARAHGLL 235


>gi|299533172|ref|ZP_07046556.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
 gi|298718702|gb|EFI59675.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
          Length = 255

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 42/79 (53%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           ++AN  +           LT REVE L  I++GK S E+A  L IS  TV+ +I +I  K
Sbjct: 177 FKANFHEESIFKHKSFESLTEREVEILKLIAQGKNSLEVASYLQISPLTVSTHIKNIYGK 236

Query: 228 TATKTRSGAIAYAVRNNIV 246
              +TR+ A+  A+   I+
Sbjct: 237 MQVRTRAQAVRCAILIGII 255


>gi|297564146|ref|YP_003683119.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848595|gb|ADH70613.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 223

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 5/144 (3%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            +   L   V     + I    G    Y + T     +   ++ +   G  +   RL   
Sbjct: 85  PQIRFLALSVSDAAEDVIGVVRGGARGYVTKTISGRELADAIVRVA-DGDAVFSPRLAGF 143

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +L A+ A      D    +   LT RE E L  I+ G    E+A  L IS  TV  +++
Sbjct: 144 -VLDAFSATDAPPVDPELDR---LTQREREVLRHIARGYAYKEVAKELFISVKTVETHVS 199

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S++RK     R     +A    +V
Sbjct: 200 SVLRKLQLSNRHELSRWATARRLV 223


>gi|282895907|ref|ZP_06303947.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281199152|gb|EFA74021.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 240

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I +G ++ +IA  L I+  TV  ++ +I+ K     R+ A   A+R+ 
Sbjct: 178 PLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 237

Query: 245 IV 246
           +V
Sbjct: 238 LV 239


>gi|300936213|ref|ZP_07151149.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300458670|gb|EFK22163.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
          Length = 221

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 147 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 206

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 207 IELIKTALRMGV 218


>gi|300898079|ref|ZP_07116447.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|301027468|ref|ZP_07190805.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|331674332|ref|ZP_08375092.1| putative 2-component transcriptional regulator [Escherichia coli
           TA280]
 gi|300358217|gb|EFJ74087.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300394976|gb|EFJ78514.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|323966643|gb|EGB62075.1| luxR family protein regulatory protein [Escherichia coli M863]
 gi|331068426|gb|EGI39821.1| putative 2-component transcriptional regulator [Escherichia coli
           TA280]
          Length = 221

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 147 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 206

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 207 IELIKTALRMGV 218


>gi|293412200|ref|ZP_06654923.1| predicted protein [Escherichia coli B354]
 gi|291468971|gb|EFF11462.1| predicted protein [Escherichia coli B354]
          Length = 210

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 196 IELIKTALRMGV 207


>gi|293416096|ref|ZP_06658736.1| response regulatory protein ygeK [Escherichia coli B185]
 gi|331654339|ref|ZP_08355339.1| putative 2-component transcriptional regulator [Escherichia coli
           M718]
 gi|291432285|gb|EFF05267.1| response regulatory protein ygeK [Escherichia coli B185]
 gi|331047721|gb|EGI19798.1| putative 2-component transcriptional regulator [Escherichia coli
           M718]
          Length = 210

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 196 IELIKTALRMGV 207


>gi|260467229|ref|ZP_05813405.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029004|gb|EEW30304.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 210

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++EG  +  IA  L IS +T   ++A+I+ K     R+ AIA A+R  +
Sbjct: 148 LSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIAIAMRQGL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|218706350|ref|YP_002413869.1| hypothetical protein ECUMN_3185 [Escherichia coli UMN026]
 gi|293406343|ref|ZP_06650269.1| predicted protein [Escherichia coli FVEC1412]
 gi|298382079|ref|ZP_06991676.1| response regulatory protein ygeK [Escherichia coli FVEC1302]
 gi|331664414|ref|ZP_08365320.1| putative 2-component transcriptional regulator [Escherichia coli
           TA143]
 gi|218433447|emb|CAR14349.1| conserved hypothetical protein, putative Bacterial regulatory
           protein LuxR family [Escherichia coli UMN026]
 gi|284922792|emb|CBG35880.1| putative two-component response regulator [Escherichia coli 042]
 gi|291426349|gb|EFE99381.1| predicted protein [Escherichia coli FVEC1412]
 gi|298277219|gb|EFI18735.1| response regulatory protein ygeK [Escherichia coli FVEC1302]
 gi|323978530|gb|EGB73612.1| luxR family protein regulatory protein [Escherichia coli TW10509]
 gi|331058345|gb|EGI30326.1| putative 2-component transcriptional regulator [Escherichia coli
           TA143]
          Length = 210

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 196 IELIKTALRMGV 207


>gi|157162307|ref|YP_001459625.1| LuxR family transcriptional regulator [Escherichia coli HS]
 gi|170018901|ref|YP_001723855.1| two component LuxR family transcriptional regulator [Escherichia
           coli ATCC 8739]
 gi|157067987|gb|ABV07242.1| transcriptional regulator, LuxR family [Escherichia coli HS]
 gi|169753829|gb|ACA76528.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|323941628|gb|EGB37808.1| luxR family protein regulatory protein [Escherichia coli E482]
 gi|332344746|gb|AEE58080.1| response regulator protein [Escherichia coli UMNK88]
          Length = 210

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 196 IELIKTALRMGV 207


>gi|120406465|ref|YP_956294.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119959283|gb|ABM16288.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 219

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++G+++ EIA  L IS  TV ++I  I  K   + R+ AI YA +  
Sbjct: 154 DLTPRELDVLRLMAKGRSNSEIADELVISGVTVKSHIGRIFLKLRLRDRAAAIVYAYQKG 213

Query: 245 IV 246
           IV
Sbjct: 214 IV 215


>gi|20141967|sp|Q46791|YGEK_ECOLI RecName: Full=Putative uncharacterized response regulatory protein
           ygeK
          Length = 210

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 196 IELIKTALRMGV 207


>gi|15832966|ref|NP_311739.1| hypothetical protein ECs3712 [Escherichia coli O157:H7 str. Sakai]
 gi|168747683|ref|ZP_02772705.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168753777|ref|ZP_02778784.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168759967|ref|ZP_02784974.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168766832|ref|ZP_02791839.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168775716|ref|ZP_02800723.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168778853|ref|ZP_02803860.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168799972|ref|ZP_02824979.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|195936460|ref|ZP_03081842.1| hypothetical protein EscherichcoliO157_08342 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808850|ref|ZP_03251187.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208813228|ref|ZP_03254557.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208818554|ref|ZP_03258874.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209398226|ref|YP_002272320.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217327388|ref|ZP_03443471.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254794795|ref|YP_003079632.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|20140955|sp|P58664|YGEK_ECO57 RecName: Full=Uncharacterized response regulatory protein ygeK
 gi|13363184|dbj|BAB37135.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768739|gb|EDU32583.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188017817|gb|EDU55939.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189003396|gb|EDU72382.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189358682|gb|EDU77101.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189363784|gb|EDU82203.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189369373|gb|EDU87789.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189377667|gb|EDU96083.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|208728651|gb|EDZ78252.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208734505|gb|EDZ83192.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208738677|gb|EDZ86359.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209159626|gb|ACI37059.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209747612|gb|ACI72113.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|209747614|gb|ACI72114.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|209747616|gb|ACI72115.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|217319755|gb|EEC28180.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254594195|gb|ACT73556.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|320189186|gb|EFW63845.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. EC1212]
          Length = 210

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 196 IELIKTALRMGV 207


>gi|13471875|ref|NP_103442.1| hypothetical protein mll1989 [Mesorhizobium loti MAFF303099]
 gi|14022619|dbj|BAB49228.1| mll1989 [Mesorhizobium loti MAFF303099]
          Length = 525

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E L  I+ G T+ E+A  L IS  T +++I S+  K    TR+ A  YAV + +
Sbjct: 458 MTPREIEVLRLIATGLTAKEVARKLDISPKTADHHIESVYSKIGVTTRAAAALYAVEHGL 517

Query: 246 V 246
           V
Sbjct: 518 V 518


>gi|119716860|ref|YP_923825.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119537521|gb|ABL82138.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 207

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE E LT + EG  + +IA  L IS  TV  ++ S   +     R+ A  +A
Sbjct: 143 SPQVQLTSRETEVLTLVREGLANKQIARRLDISERTVKAHLTSAFARIGVADRTQAALWA 202

Query: 241 VRNNI 245
            RN +
Sbjct: 203 ERNGL 207


>gi|186685215|ref|YP_001868411.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467667|gb|ACC83468.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 239

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + + LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K     R+ A   A+
Sbjct: 174 QPYTLTERELEVLQLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 233

Query: 242 RNNIV 246
           R+ +V
Sbjct: 234 RSGLV 238


>gi|327443251|gb|EGE89905.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
          Length = 218

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 10/176 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V    P  +   + +   D       ++  +++   +  T   +      +D      
Sbjct: 40  DVVKETAPDVVPMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99

Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D   +  GL  +     ++  +    +   + +Q        V   K  +LT RE
Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGT-----VTGSKAEQLTARE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E    ++ G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|325964072|ref|YP_004241978.1| LuxR family transcriptional regulator [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470159|gb|ADX73844.1| transcriptional regulator, LuxR family [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 545

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                   G+   LT RE E L  ++ G+ +  IA  L +S  TV  +I++I  K    +
Sbjct: 471 LMRKGDDGGEPGPLTAREAEVLRLVASGQGNRAIAAQLFLSEKTVARHISNIFLKLGLSS 530

Query: 233 RSGAIAYAVRNNI 245
           R+ A  YA  + +
Sbjct: 531 RAAATRYAFEHGL 543


>gi|111224287|ref|YP_715081.1| LuxR family transcriptional regulator [Frankia alni ACN14a]
 gi|111151819|emb|CAJ63539.1| Putative LuxR-family transcriptional regulator [Frankia alni
           ACN14a]
          Length = 349

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 12/147 (8%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--------GRIILRDRL 159
              P+  ++P     PA        L     + +  L L + +           +LR R+
Sbjct: 206 RTEPLSTSMPPGHRAPAARAVGAVPLPRSPGQPQESLRLAYRELQEVTEHVADPLLRGRI 265

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             +  L     +     +   G    LT RE+E L  ++ G ++ E A  L +S  TV  
Sbjct: 266 GGVSELLRGLLDQ----EAKVGGRLALTPRELEVLAQVALGLSNVETARRLTVSPETVKA 321

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           Y+ SIMRK   + R+ A+  A +  ++
Sbjct: 322 YLRSIMRKLGVRNRTAAVHAARQLGML 348


>gi|319948854|ref|ZP_08022967.1| regulatory protein, LuxR [Dietzia cinnamea P4]
 gi|319437456|gb|EFV92463.1| regulatory protein, LuxR [Dietzia cinnamea P4]
          Length = 203

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFE 185
           D R                 L  +  +   +R+     L A   +        W   D  
Sbjct: 80  DRRAVDEAVAAGARGFLAKSLVGEELVAGIERIAAGETLTAPARDGDTGPHAVWPAGDSG 139

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L  I++G ++++IA    +S NTV +YI    RK    TR  A+A+A++N 
Sbjct: 140 LSPREAEMLALIAQGLSNEDIATACYLSINTVKSYIRDAYRKIGVTTRPQAVAWALKNG 198


>gi|294630515|ref|ZP_06709075.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|292833848|gb|EFF92197.1| two-component system, regulatory protein [Streptomyces sp. e14]
          Length = 225

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 51/160 (31%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  +  + +         P  L    F                +        R+   +  
Sbjct: 60  MTGIEATRRILADAADPAPRILILTTFDLDEYVYGALRAGAAGFLLKDAGPERLLAAVTA 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     +        +      +A+   +          LTGREVE L  ++ G T+ E 
Sbjct: 120 VHGGDSLFAPVVTRRLVEAFTERADTPPAPADPPADLRALTGREVEVLRLVARGLTNAEA 179

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++   M K    +R+ A+  A  + +V
Sbjct: 180 ADRLFISEATVKTHLNRTMTKLNLASRAQAVVVAYESGLV 219


>gi|291298070|ref|YP_003509348.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567290|gb|ADD40255.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 6/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143
           VR   +   +    + +   +    +  T   +    AG+    + +       A +   
Sbjct: 58  VRMPDVDGVEATARLTRERPQSKVILLTTFDVDAYVYAGLRAGASGFLLKDSHAATLIAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++     W    L +  A +         +   LT RE + L+    G ++
Sbjct: 118 VHTVASGNAVLSP---WATSRLVSTFAPLLPEPLATPPRLKALTARERDVLSLTGRGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  LGI   TV +++ S+M K   + R  A+  A    ++
Sbjct: 175 NEIATELGIGYETVKSHLRSVMTKLRLRDRVHAVIVAYETGLL 217


>gi|29831080|ref|NP_825714.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608194|dbj|BAC72249.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 224

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++  G+ ++     ++       +    +  A   +         
Sbjct: 99  RAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSRLAETPRLSASVHAAY 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A   
Sbjct: 159 GELTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 218

Query: 244 NIV 246
            +V
Sbjct: 219 RLV 221


>gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9605]
 gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9605]
          Length = 245

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 16/189 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +Q L  +V SD     +    L +K +    L     +F        +         + Y
Sbjct: 59  QQMLPDVVISDVMMPRLDGYGLLQKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 118

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---------AYQANMFKSYD 177
               FD   +   +  +  + + +L++       ++G +A           QA    S +
Sbjct: 119 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSTE 178

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                    T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  +
Sbjct: 179 PVV---HSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELV 235

Query: 238 AYAVRNNIV 246
            YA+ + +V
Sbjct: 236 RYALEHRLV 244


>gi|56697147|ref|YP_167510.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
 gi|56678884|gb|AAV95550.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
          Length = 233

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 11/182 (6%)

Query: 68  LFQEQKLDSIVSS-DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            +QEQ    I  +       +  +  S  ++  +  +   +     F    + +T P   
Sbjct: 57  HYQEQGFHMIDPTLHMSQRSIAPVDWSRLERSNDFRRVFRDAHD--FGIGDQGLTIPVRG 114

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DF 184
                    DV  + +       + + ++R  + ++  LA +  +   S D+        
Sbjct: 115 PYG------DVGLLSVTRECSTEEWQKLVRHVIGDLQSLAVHIHDTVMSSDMLGRILYHP 168

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REVE L W++ GK+  +I  IL IS  TV  ++ S   K    T + A+  AV   
Sbjct: 169 SLSTREVEILQWVAAGKSQQDIGDILSISHRTVEVHLRSSREKLCALTTAQAVGRAVGLG 228

Query: 245 IV 246
           ++
Sbjct: 229 LI 230


>gi|320333696|ref|YP_004170407.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754985|gb|ADV66742.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 214

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D    +L   + R+  G             + L +  +      +
Sbjct: 89  VFEAVKAGARGYVLKDADASTLLDAIQRVAGG-------------EALLDADMAQNVLDD 135

Query: 172 MFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                +V    K  +L  RE   L  +++G ++ +IA+ L IS  TV N ++ I  K   
Sbjct: 136 FRDKREVLPSEKHADLNERETTILKLLAQGYSNQDIALRLDISEKTVRNRLSEIFTKLQL 195

Query: 231 KTRSGAIAYAVRNNI 245
             R+ A  YA+R  I
Sbjct: 196 NNRTQAALYAIREGI 210


>gi|238792074|ref|ZP_04635710.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
 gi|238728705|gb|EEQ20223.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
          Length = 202

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 21/202 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPE 118
           ++V       + +  ++  D  FD+V     +   +      +      L       +  
Sbjct: 1   MIVDDHPLMRRGIRQLLEMDHSFDVVA--EANCGSEAITEAAKCQPDVILLDLNMKGMSG 58

Query: 119 NITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL---------- 164
             T  A    G+D R   LT   AR  +  M+       +L+D   EI L          
Sbjct: 59  LDTLKALRHDGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRRAAHGE 118

Query: 165 --LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
              +   A    S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +I 
Sbjct: 119 NVFSNEVAQYLSSRHEEINPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIR 178

Query: 223 SIMRKTATKTRSGAIAYAVRNN 244
           +++RK   ++R  A    + N 
Sbjct: 179 NLLRKLNVRSRVAATIMFLENK 200


>gi|167464268|ref|ZP_02329357.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383996|ref|ZP_08057726.1| two-component response regulator YfiJ-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151473|gb|EFX44660.1| two-component response regulator YfiJ-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 225

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
            Y     D     + L  L      + R        +A    + F+S      +D     
Sbjct: 105 GYLLKNMDPDEWLLYLHALLDDNSEVARK-------MADRIMSQFRSPVKGTEQDPSPSV 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  +S+G  + +IA+ L IS NTV N++ +I+ K   + R    AYAV++ +
Sbjct: 158 LTARETEIVAHVSKGYNNKQIALRLSISENTVKNHMKNILDKLNLENRVQLTAYAVKHQL 217


>gi|110833289|ref|YP_692148.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis
           SK2]
 gi|110646400|emb|CAL15876.1| DNA-binding response regulator, LuxR family [Alcanivorax
           borkumensis SK2]
          Length = 216

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 146 LLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           LL    + IL   LW    +L  Y              +  LT REVE L  ++ G  + 
Sbjct: 117 LLSKGLKAILDGELWFPRAVLQTYLMKSRTFNKTFSRSEVSLTDREVEVLKVMATGAKNS 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +IA  L +S +T+  +I +I +K     R  A+ +A  N
Sbjct: 177 DIACSLNLSPHTIKTHIYNIFKKINASNRLQAVNWAQEN 215


>gi|41409373|ref|NP_962209.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398193|gb|AAS05823.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 221

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 10/150 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-------- 157
            +    V    P +        +    +   V     G ++       + +         
Sbjct: 68  AQATAAVLAVSPSSRVLVLSASDERDDVLQAVKAGAAGYLVKSASKAELAQAVTDTAAGR 127

Query: 158 --RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                 +  L   +                LT RE E L ++++G ++ +IA  L +S  
Sbjct: 128 AVFTPSLAGLVLGEYRRIAQSKDDGPTRPRLTDRETEVLRYVAKGLSAKQIAEKLSLSHR 187

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TV N++ +  RK     R     YA+ + +
Sbjct: 188 TVENHVQATFRKLQVANRVELARYAIEHGL 217


>gi|269836898|ref|YP_003319126.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786161|gb|ACZ38304.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 242

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L  +++G ++ EIA  L I+  TV N+I ++ +K   + R  A+  AVR 
Sbjct: 170 LPLSPREMEVLDCVAQGLSNKEIANTLYITEQTVKNHITAVYKKLHVQDRVQALTCAVRR 229

Query: 244 N 244
            
Sbjct: 230 G 230


>gi|226304567|ref|YP_002764525.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183682|dbj|BAH31786.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 222

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 9/196 (4%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS---EKDKYYNVLQRPTELFCPV 112
           + A+ F +        +      ++  P  ++  M L      D    VL+   +    V
Sbjct: 29  LEAAGFTV-SATAEGVESARRRAAAVQPAVVLMDMNLPDGNGADATTAVLEVSPKSKVLV 87

Query: 113 FHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
                E       +    + Y   +  VA +   +   F  G+ +    L  + +L  Y+
Sbjct: 88  LSASAERDDVLDAVKAGASGYLVKSASVAELLEAVRATF-DGQAVFTPGLAGL-VLGEYR 145

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                  D    +   LT RE E L  +++G ++ +IA  L +S  TV N++ + +RK  
Sbjct: 146 RMSTAPADDRAPELPRLTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQ 205

Query: 230 TKTRSGAIAYAVRNNI 245
              R     YA+   +
Sbjct: 206 LANRVELTRYAIEQGL 221


>gi|330807579|ref|YP_004352041.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375687|gb|AEA67037.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 911

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 13/153 (8%)

Query: 106 TELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLML--LFPKGRIILRDRLW 160
            ++   +       +    G +    R  +  F+ A   +      LF + R  LR++L 
Sbjct: 759 RQMLSVMALNQKVALLLSIGREPEARRTLAQAFEAASGGVLQPFEWLFGEHREWLREQLL 818

Query: 161 EI-------GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +         LL    + + +  D     +  L+ RE   L  I++G ++ EI+  L IS
Sbjct: 819 QAPPSTLREHLLERLPSTVAQPADPAAPVET-LSSRERAVLQLIAQGCSNQEISEQLFIS 877

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TV  + + I  K   + R+ A+A A    ++
Sbjct: 878 LHTVKTHASHINSKLGVERRTQAVARAKALGLL 910


>gi|302530267|ref|ZP_07282609.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302439162|gb|EFL10978.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 217

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 10/170 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTEL------FCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + +   D      Q   EL          F       +      + +      
Sbjct: 48  PDLVLMDVRMPVLDGVAATAQICAELPETSVLVITTFDLDEYAYSALRAGASGFLVKDAP 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              + + +  +     ++         LL  Y +      D    K   LT RE + L  
Sbjct: 108 SDEMLVAIRGVLRGDAMVSPSVTKR--LLDRYLSAHRTPLD--EQKLETLTEREKDVLGL 163

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G ++ EIA  L I   TV  ++  ++ K   + R  A+ +A  + +V
Sbjct: 164 IARGLSNTEIAGTLFIGETTVKTHVGRLLNKLGLRDRVHAVVFAYESGLV 213


>gi|253996413|ref|YP_003048477.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983092|gb|ACT47950.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Methylotenera mobilis JLW8]
          Length = 274

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 36/53 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE+E ++WI  GKT+ EI +IL IS+NTV +++  I +K     R+ A+A
Sbjct: 198 LSEREIEVISWIKAGKTNQEIGMILSISQNTVKSHLKRIFQKLNIGRRAQAVA 250


>gi|2791836|gb|AAC38403.1| transcriptional activator CarR [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 244

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 79/226 (34%), Gaps = 31/226 (13%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              ++  + +    S+F++ +            + S++P   +      E      ++  
Sbjct: 9   IKRKLKGVGDVW-FSYFMMSKT-----STSHPYIISNYPEAWMNEYLKKEMFLSDPIIVA 62

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLT----------------FDVARIRIGLMLLF 148
                 P      + +T  A   + + S                   +VA + I   L  
Sbjct: 63  SLARITPFSWDDNDLVTLRAKNQDVFISSVQHDISSGYTFVLHDHDNNVATLSIANHLED 122

Query: 149 PKGRIILRDRLWEIGLL---------AAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                 ++    ++ +L         A  +A   ++      ++  L+ RE E L  +S 
Sbjct: 123 ADFEKCMKSHENDLQMLLVNVHEKVMAYQRAIKDQAKPPDSSRNALLSPRETEVLFLVSS 182

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G+T  E++ ILGIS  TV  +I + +RK        AI  A+  N+
Sbjct: 183 GRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|310287681|ref|YP_003938939.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum
           S17]
 gi|309251617|gb|ADO53365.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum
           S17]
          Length = 255

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 12/147 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----- 166
           V   +    +     D    +L   +  +  G  ++ P     L +++ E G        
Sbjct: 109 VMAAINAGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTA 168

Query: 167 ----AYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               A  ++           D EL   T RE E L  I+ G ++ EIA  L IS  T   
Sbjct: 169 TDGYADGSSTMPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKT 228

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++A I+ K   + R  A+ +A  N +V
Sbjct: 229 HVAHILAKINARDRVQAVVFAYDNGLV 255


>gi|239932840|ref|ZP_04689793.1| LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC
           14672]
          Length = 144

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              G    LT R+   L+ ++EG  + +IA++LG S +TV N I  IM +   + R+ A+
Sbjct: 76  ADGGGRPALTARQASVLSLMAEGYGNADIALLLGCSEHTVKNVIYEIMARLQARNRAHAV 135

Query: 238 AYAVRNNIV 246
           A+AVR+ +V
Sbjct: 136 AHAVRHGLV 144


>gi|209527179|ref|ZP_03275692.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209492428|gb|EDZ92770.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 208

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 8/161 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L R   ++   +   +L     +         E +   +   + YC     V  + + + 
Sbjct: 56  LPRLDGIAATKQIKEILPEIRVVMLTSHTAETEVLASLSSGADAYCVKGGSVDSLIVAIQ 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +     +          +A       K   +       L+ RE+E L  + EGK++ E
Sbjct: 116 AAYEGATYLDP-------QVARLVMEHLKPP-LPQSNLGTLSPRELEVLKLMVEGKSNPE 167

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S NT+  ++  IM K A   R      A+R+ +V
Sbjct: 168 IAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGLV 208


>gi|218438401|ref|YP_002376730.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171129|gb|ACK69862.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 249

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 167 AYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++Q  + +S D  + +  E   LT RE++ L  I  G  + +IA  L I+  TV  ++ +
Sbjct: 166 SHQTRVIESVDPEYQQLLESDPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRN 225

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K     R+ A   A+R+ +V
Sbjct: 226 ILNKLCVNDRTQAAVRALRSGLV 248


>gi|94309557|ref|YP_582767.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93353409|gb|ABF07498.1| Two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 231

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---E 185
            Y     D   I + +      G  I       I  LA   A +    +V  G       
Sbjct: 110 GYLLKERDDVEIILSIRSALRGGAPIDPFVARRILDLAGKMAPLAGGAEVQAGPTVGAPP 169

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ +S+G T+ EIA +L +S+ TV  +I +  +K A  +R+ A+  A  + +
Sbjct: 170 LSAREIEILSLVSKGLTNREIAEVLSLSKLTVECHIRNSYKKLAVHSRTQAVFEARASGL 229

Query: 246 V 246
           +
Sbjct: 230 L 230


>gi|333024002|ref|ZP_08452066.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332743854|gb|EGJ74295.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 260

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G ++ +IA  L +S  TV  +I ++  K   + R+ A+ YA  + I
Sbjct: 192 LTAREAEVLALIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYAYLHGI 251

Query: 246 V 246
           V
Sbjct: 252 V 252


>gi|330466893|ref|YP_004404636.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328809864|gb|AEB44036.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
          Length = 238

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 56/171 (32%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  + + +       P  L    F              + +     
Sbjct: 64  DVVLMDVEMPDVDGLEATRRIRAEQDQAGPAVLILTTFDRDDYLFAALRAGASGFLLKNG 123

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + ++     ++  +    +    A                 +LT RE E L 
Sbjct: 124 TPEALIEAIRVVARGDGLLAPEITRRVIATFARPGGPSTGGTDPQAALRDLTPREREVLV 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV ++++ ++ K   + R  A+ +A    +V
Sbjct: 184 LVAGGASNAEIATALHLGEATVKSHVSRVLAKLELRDRVQAVVFAYEQGVV 234


>gi|298250577|ref|ZP_06974381.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297548581|gb|EFH82448.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1102

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 40/77 (51%)

Query: 170  ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            ++  +   +       LT RE E L+ ++ G ++ +IA  L IS +TV  +++++  K  
Sbjct: 1026 SSARQPSVISSAPGISLTRREQEVLSLLAAGASNQDIAQALVISLDTVKKHVSNLFGKLG 1085

Query: 230  TKTRSGAIAYAVRNNIV 246
               R+ A+A A   +++
Sbjct: 1086 AGNRTQAVALARARSLL 1102


>gi|238060903|ref|ZP_04605612.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237882714|gb|EEP71542.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 223

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 4/164 (2%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++R +  +       +L    E    V   +    T               V R   G 
Sbjct: 59  EVIRGLRAALPQVRVLMLSASGEQ-QSVLDAVKAGATGYLVKSAAPAEFLDAVRRTAAGE 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGK 201
            +  P    ++      +   A   A          G+D +   LT RE E L  +++G 
Sbjct: 118 PVFTPGLAGLVLGEFRRLAAGADESAGGRGPVAATAGRDTDAPRLTDRETEVLRLVAKGM 177

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  +IA  LG+S  TV N++ + + K     R     YA+   +
Sbjct: 178 SYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTRYAIERGL 221


>gi|239816565|ref|YP_002945475.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803142|gb|ACS20209.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 235

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 8/137 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  L          D     L   +  I  G   + P            +G LAA Q +
Sbjct: 104 IFAALRAGAIGYLLKDRDDLELGIALRSIEQGGSPIDPAIAR------HILGWLAAQQPS 157

Query: 172 MFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                           LT RE   L  +++G ++ ++A  L ISR TV  +  +I RK A
Sbjct: 158 PPAVSAADAPAALPVALTPRERRILELVAQGLSNRDMAESLSISRLTVECHTKNIYRKLA 217

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R+ A+  A R+ ++
Sbjct: 218 VSSRTEAVYQARRHGLL 234


>gi|91780463|ref|YP_555670.1| LuxR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693123|gb|ABE36320.1| transcriptional regulator, LuxR family [Burkholderia xenovorans
           LB400]
          Length = 262

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 85/271 (31%), Gaps = 54/271 (19%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-------------VGASHFLL 63
                  +  P R   ++             R+   T+              +G  H+++
Sbjct: 3   PISRRRSNEGPHRPSTVSDRQQAGAPAPLK-RLACATDIPSLVESFGHAAGKLGFPHYVI 61

Query: 64  VRWDLFQE----QKLDSIVSSDWPFDLV-----RCMALSEKDKYYNVLQRP--------- 105
            R    +     Q    ++ S +P + V     R  AL++        Q           
Sbjct: 62  SRVTRSRSTRAPQTALEMIGSHYPKEWVQHYQRRDYALTDPVHRAAFFQSAPYRWHDIID 121

Query: 106 ------TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR- 158
                   L       LP  ++ P    +    L      +      +  +   ++  + 
Sbjct: 122 LTKADHRFLGEASEAGLPAGLSIPVHQSDGSVLLFNLAGPLHSVNSEINARRACLMSAQF 181

Query: 159 ---LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
              L  +GL+ + +A               LT  ++ CLTW++ GKTS EI  ILG S  
Sbjct: 182 NFELHRLGLIHSRRAARL------------LTPCQIVCLTWVARGKTSAEIGEILGCSHY 229

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV+ ++   M       R+ A   A    ++
Sbjct: 230 TVDYHVKKAMEALNIWGRTAAAVQATVQGLI 260


>gi|51894355|ref|YP_077046.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858044|dbj|BAD42202.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 203

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 11/165 (6%)

Query: 83  PFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           P  ++  +++ + +   Y   L   T +     H  P  +            L       
Sbjct: 47  PELVILDLSMPDGNGLLYLRQLSEMTRVLVLTMHDDPAYVRQVIQAGGSGYVLKEAAD-- 104

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
               + LF   R +L  + +    LAA         +    K   L+ RE+E L  ++ G
Sbjct: 105 ----VELFSAIRAVLSGQTYIYPTLAAKLVEEKAGGE---RKSVPLSPRELEVLRLVALG 157

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T+ EIA+ L +S  TV  Y   I  K    TRS  + YA+ + +
Sbjct: 158 HTNQEIALQLNVSVRTVETYKTRICEKLGVYTRSEMVRYALEHKL 202


>gi|307325178|ref|ZP_07604382.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889324|gb|EFN20306.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 219

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVH 179
                  +   ++   +A    G ++   +  + +  R     L  AA           H
Sbjct: 92  GLALSAADDIGAVRNALAGGVKGYVVTGTRTNLGIPGRPGTAPLGAAARMHRRPPGAPGH 151

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G   EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A 
Sbjct: 152 PGGYRELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAV 211

Query: 240 AVRNNIV 246
           A+R  I+
Sbjct: 212 ALRTGII 218


>gi|289641921|ref|ZP_06474076.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289508221|gb|EFD29165.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 371

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 52/170 (30%), Gaps = 21/170 (12%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +   E   Y      P        H    +        +R     F      +    +  
Sbjct: 194 IRAGEATSYVVAPITPAGRVVGFLHADHGSGGHTCDETDRDVLWAFSEGFGHLYERSVLV 253

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHW---------------------GKDFELTG 188
           +   + RDR+ +   +           ++                       G   ELT 
Sbjct: 254 ERLRLQRDRVRQTLAVVGAALEELTEAEIELVTAPDDDTPVARTASSVFRSEGGLDELTA 313

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           RE E L  I+ G ++ EIA  L I+  TV  ++  I+ K     RS AIA
Sbjct: 314 REREVLALIAGGASNQEIAEQLVITVGTVKTHVKHILAKLGAVNRSQAIA 363


>gi|282861721|ref|ZP_06270785.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563537|gb|EFB69075.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 229

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 10/174 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCS 132
           P  ++  + + E D      +          RP  L    F              + +  
Sbjct: 49  PDVVLMDVRMPEMDGLAAARELLSAPAGTDHRPKVLMLTTFDVDDYVYEALRVGASGFLL 108

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                A +   + ++     ++       +    A Q            +   LT RE E
Sbjct: 109 KDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPSGAFRSGPARRLKGLTPRETE 168

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G ++ EIA  L ++  TV  +++ I+ K   + R+ A+ +A  + +V
Sbjct: 169 VLELVARGLSNQEIAGRLVVAEQTVKTHVSRILAKADLRDRAQAVIFAYESGLV 222


>gi|256396450|ref|YP_003118014.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362676|gb|ACU76173.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 211

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 19/135 (14%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   +    T     D     L   V     G  +L P     L  RL +          
Sbjct: 96  IVRAVEAGATGYLLKDTPRADLAEAVRLAARGETVLAPAVAAKLVSRLRQPAA------- 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  ++ G  + EI   L IS  TV  ++     K    
Sbjct: 149 ------------QPLTPREREVLALVARGLANAEIGRELFISEATVKTHLVRAFGKLGVD 196

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A+   ++
Sbjct: 197 DRTAAVTKAMAQGLL 211


>gi|196232090|ref|ZP_03130945.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223812|gb|EDY18327.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 9/158 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            ++L   D    +     E        L    T   G D+ + +L+   A  R  +M   
Sbjct: 59  DLSLPRLDGVAAIRTICREFPEARIIAL----TTRQGDDDIHQALS---AGARSYVMKNM 111

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P+  ++   R    G    Y     ++  +   K   LT RE+E +  ++ G ++ EI +
Sbjct: 112 PRQEMLRAIRAVHDG--QEYLPQEVQTALLQHEKRAPLTPRELEVIRLLARGCSNKEIGM 169

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LGI+  T   +++ ++ K     RS A+  A+R+ I+
Sbjct: 170 ALGIAEITAKIHVSHLLSKMGVLDRSQAVMEALRHGII 207


>gi|72162981|ref|YP_290638.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916713|gb|AAZ56615.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 233

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 5/141 (3%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y + T     +   ++ +   G  +   RL    +L
Sbjct: 98  RFLALSVSDAAEDVIGVIRAGARGYVTKTISGTELADAIVRVA-DGDAVFSPRLAGF-VL 155

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ A      D    +   LT RE E L  I+ G    E+A  L IS  TV  +++S++
Sbjct: 156 DAFAATDAPPVDPELDR---LTQREREVLRLIARGYAYKEVARELFISVKTVETHVSSVL 212

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R     +A    +V
Sbjct: 213 RKLQLSNRHELSRWATARKLV 233


>gi|25027912|ref|NP_737966.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259506306|ref|ZP_05749208.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23493195|dbj|BAC18166.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259166086|gb|EEW50640.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 221

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L          + R   LT  +  +  G  ++ P+    +  +L E+ L    Q   
Sbjct: 94  FGALRAGAAGFLLKNTRPVELTAAIRTVHAGDAVVSPR----ITAKLIEVALPQLNQGVP 149

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D    +   LT RE E    +  G T+ EIA  L +S +TV  +   ++ K    +
Sbjct: 150 PTEQDPELDR---LTEREREVFVLVGRGYTNPEIAQALHLSESTVKTHFGRVLMKLGLTS 206

Query: 233 RSGAIAYAVRNNIV 246
           R  A+  A    +V
Sbjct: 207 RVQAVIRAYELGLV 220


>gi|154244941|ref|YP_001415899.1| two component LuxR family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154159026|gb|ABS66242.1| two component transcriptional regulator, LuxR family [Xanthobacter
           autotrophicus Py2]
          Length = 210

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             + +        LT R++E L  +S G ++ EI   L +S  TV  +I SI R      
Sbjct: 137 VATSEAAEEPAPHLTTRQLEVLKLLSRGLSNKEIGNTLDLSEKTVKVHITSIFRSLHVIN 196

Query: 233 RSGAIAYAVRNNIV 246
           R+ A + A + N++
Sbjct: 197 RTQAASAARQGNLI 210


>gi|166367722|ref|YP_001659995.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
 gi|166090095|dbj|BAG04803.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
          Length = 223

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L   +     S+ +   +   LT RE E L WI++ K++  IA ++G S  TV  ++ 
Sbjct: 130 QFLLILEEQELPSFSIAALELLGLTKREAEVLFWIAQDKSNAAIAKVIGCSEGTVRKHLE 189

Query: 223 SIMRKTATKTRSGAIAYAV-RNNIV 246
            I  K   +TR+ A+  A+ +  ++
Sbjct: 190 HIHGKLGVQTRTAAVIVALEKLGLL 214


>gi|33864279|ref|NP_895839.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9313]
 gi|33641059|emb|CAE22188.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9313]
          Length = 92

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ 
Sbjct: 11  HISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMD 70

Query: 243 NNIV 246
           +  +
Sbjct: 71  HGKI 74


>gi|116620723|ref|YP_822879.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223885|gb|ABJ82594.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 216

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 3/134 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
            H+    +        R   L        I  ++   +G+      + +  +L       
Sbjct: 85  MHSDESYVLKALKAGARAYLLKDSAEHDLIAAVIAVSEGKAFFSPAISK--MLVEDYMRQ 142

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +   +    +  LT RE E L  ++EGK + E+A IL +S  TV  +  +I++K    +
Sbjct: 143 MQERQIEDSYEL-LTTREREVLQLLAEGKNNKEVAAILNLSLYTVETHRGNILQKLNLHS 201

Query: 233 RSGAIAYAVRNNIV 246
            +  I YA+R  ++
Sbjct: 202 GAELILYAIRKGVI 215


>gi|302189119|ref|ZP_07265792.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
          Length = 909

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRL-------WEIGLLAAYQANMFKSYDVHWGKDF 184
           SL        I   +L  +    L ++L           LL    A    S +   G D 
Sbjct: 788 SLPAASGGALIPFKVLLAEHPQWLHEQLLQLPPCRVRAALLEKLPACCTPSPEPAHGSDC 847

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    
Sbjct: 848 -LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLG 906

Query: 245 IV 246
           ++
Sbjct: 907 LL 908


>gi|295400759|ref|ZP_06810736.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977340|gb|EFG52941.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 185

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 43/72 (59%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D        LT  E++ L +ISE +T+ EI+ +L IS+ TV ++++SI+RK    +R 
Sbjct: 113 PADRLSNYHPPLTNVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRV 172

Query: 235 GAIAYAVRNNIV 246
           GA+  A++  I+
Sbjct: 173 GAVVKAMKLGIL 184


>gi|220906824|ref|YP_002482135.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863435|gb|ACL43774.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 13/214 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++ +D        + +L E       ++   +  Q+  L   V++  P  ++  + +  
Sbjct: 7   RLLLVDDQQIIRQGLRSLLE-AKPDLEVVGEAENGQQAVL--QVAALHPDVVLMDVRMPI 63

Query: 95  KDKYYN---VLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLF 148
            D       + Q+  +    V  T  ++      M      Y         +   +  + 
Sbjct: 64  MDGVAATRLIGQQFPQTRVLVLTTFDDDEYVSRSMQLGARGYLLKDTHSDDLAAAIRAV- 122

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +G   +   L E  +     ++              LT RE E L+ I  G ++ EIA 
Sbjct: 123 HRGYTQMGPGLLEKAIAPPAVSSTPPPLPPELA---GLTPREREVLSLIVAGASNREIAE 179

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L IS  TV N+I+ I+ +   + R+ A  +A R
Sbjct: 180 ALYISERTVKNHISRILSQLHLRDRTQAAMFASR 213


>gi|313140461|ref|ZP_07802654.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313132971|gb|EFR50588.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 248

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 12/147 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----- 166
           V   +    +     D    +L   +  +  G  ++ P     L +++ E G        
Sbjct: 102 VMAAINAGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTA 161

Query: 167 ----AYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               A  ++           D EL   T RE E L  I+ G ++ EIA  L IS  T   
Sbjct: 162 TDGYADGSSTMPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKT 221

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++A I+ K   + R  A+ +A  N +V
Sbjct: 222 HVAHILAKINARDRVQAVVFAYDNGLV 248


>gi|124006802|ref|ZP_01691632.1| two-component response regulator [Microscilla marina ATCC 23134]
 gi|123987483|gb|EAY27192.1| two-component response regulator [Microscilla marina ATCC 23134]
          Length = 208

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L ++ EG ++ EIA  L IS  TV+N+ A+I++K   K     + +A+ + 
Sbjct: 147 QLSAREKEVLHFLVEGLSNKEIADKLFISSKTVDNHRANILKKLNLKNNVQLVRFALEHK 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|59713015|ref|YP_205791.1| DNA-binding transcriptional activator VpsT (CsgD-like) [Vibrio
           fischeri ES114]
 gi|59481116|gb|AAW86903.1| DNA-binding transcriptional activator VpsT (CsgD-like) [Vibrio
           fischeri ES114]
          Length = 214

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 44/96 (45%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           ++ +   +II  +      +++       +  +        LT RE E L  ++ G ++ 
Sbjct: 109 IISYGVKKIIEGEMWLSRKIISELIFTYREKQNAILSTSISLTTRESEILRLLASGASNL 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +IA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 169 DIANSLFVSENTVKTHLYNVFKKLNVKNRLQAMMWA 204


>gi|87123676|ref|ZP_01079526.1| possible DNA-binding response regulator [Synechococcus sp. RS9917]
 gi|86168245|gb|EAQ69502.1| possible DNA-binding response regulator [Synechococcus sp. RS9917]
          Length = 261

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           LV     +E+ L S+ +SD   DL+ C  + E     ++++R  E   P   TL     P
Sbjct: 63  LVAATSTEEECLLSLQNSD--ADLLVCTDMLEIGSGPSLVRRAKEAH-PGLKTLMLIQRP 119

Query: 123 PAGMDNRYCSLTFDV--ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                        D   +    G   +      I  D  +  G++     +         
Sbjct: 120 IVRTILEAVEAHCDGLCSHQSTGTGSVRTALAAIDSDGTYMDGVITGVLRHGRLGGSSGH 179

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   EL+ RE + L  +  G ++ EIA  L +S +TV ++++S++RK     R+ A+  A
Sbjct: 180 GPLAELSLREEDVLRGLCRGMSNQEIADALVVSIDTVKSHVSSLLRKLPANDRTHAVVVA 239

Query: 241 VRNNIV 246
            R  +V
Sbjct: 240 FREGLV 245


>gi|319782058|ref|YP_004141534.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167946|gb|ADV11484.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 208

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++ D H  +   L+ RE E L  ++EG  +  IA  L IS +T   ++A+I+ K     R
Sbjct: 135 EASDEHAVRP-SLSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANR 193

Query: 234 SGAIAYAVRNNIV 246
           + AIA A+R  +V
Sbjct: 194 TDAIATAMRQGLV 206


>gi|269796958|ref|YP_003316413.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269099143|gb|ACZ23579.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 222

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 10/178 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMD 127
            +  S     ++  + +   D      Q   +        L    F T    +       
Sbjct: 42  RLARSAQADLVLMDIRMPGTDGIEATRQICADDALAGVKVLVLTTFETDELVVAALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     D A +   +  +    +++         L+                   +LT
Sbjct: 102 SGFLGKGVDPAALIDAVRTVAEGEQLLSPAATR--SLIERVVQEPEPEPPAVVHGMSDLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E  + ++ G ++ EI   L IS  TV  ++   M KT  + R+  + +A    +
Sbjct: 160 EREREITSLVAGGLSNTEIGQHLFISPATVKTHVNRAMMKTGARDRAQLVVFAYDAGL 217


>gi|238023440|ref|YP_002907673.1| DNA-binding HTH domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237880493|gb|ACR32822.1| DNA-binding HTH domain-containing protein [Burkholderia glumae
           BGR1]
          Length = 235

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190
           AR   GL+ L      I    L  + L  ++  N   S         +  G    LT RE
Sbjct: 120 ARGAFGLLSLARGEGEIDGHELKRLSLQLSWITNAVHSAMTAHVFDSLGLGAAISLTERE 179

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L W  EG  + +I+  L IS +TVN +I  ++ K     +  A A AV  N++
Sbjct: 180 RQVLRWTVEGLNAFDISEKLNISVSTVNWHIGKVLAKFGATNKVQAAARAVALNLL 235


>gi|229494528|ref|ZP_04388291.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229318890|gb|EEN84748.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 222

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 9/196 (4%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS---EKDKYYNVLQRPTELFCPV 112
           + A+ F +        +      ++  P  ++  M L      D    VL+   +    V
Sbjct: 29  LEAAGFTV-SATAEGVESARRRAAAVQPAVVLMDMNLPDGNGADATTAVLEVSPKSKVLV 87

Query: 113 FHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
                E       +    + Y   +  VA +   +   F  G+ +    L  + +L  Y+
Sbjct: 88  LSASAERDDVLDAVKAGASGYLVKSASVAELLEAVRATF-DGQAVFTPGLAGL-VLGEYR 145

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                  D    +   LT RE E L  +++G ++ +IA  L +S  TV N++ + +RK  
Sbjct: 146 RMSTAPADDRAPELPRLTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQ 205

Query: 230 TKTRSGAIAYAVRNNI 245
              R     YA+   +
Sbjct: 206 LANRVELTRYAIEQGL 221


>gi|297563008|ref|YP_003681982.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847456|gb|ADH69476.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 241

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHWGKDFELT 187
            Y      V  +   +  +      I         L+  + +    +S         ELT
Sbjct: 122 GYLLKAISVTELAEAVRAIVKGDSFINPA--MATKLIGEFAELAKQESAPPSRTTIPELT 179

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE E L  ++    + EI   L I+ NTV N++  I+ K    +R+ A  YAVR
Sbjct: 180 RRETEVLKLLARSLNNREIGERLFITENTVKNHVRKILEKLQVHSRTEAAIYAVR 234


>gi|15805459|ref|NP_294155.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6458112|gb|AAF10009.1|AE001902_9 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 214

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 78/219 (35%), Gaps = 15/219 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D    +   + +L E  G    + V  +    ++     +   P  ++  + +
Sbjct: 1   MIRVLLADDHALFRQGLRSLLESEG----MRVIGEAANGREAVRYAADTQPDVILMDIQM 56

Query: 93  SEKDKY------YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            E D          +  +   +   ++                Y     D   +   +  
Sbjct: 57  PELDGVKATQSILEINPQARVIMITMYRQDRYVFEAVKAGARGYILKDADAGTLIDAITR 116

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     ++  D      +L  ++    K  ++   K  +L  RE   L  +++G ++ +I
Sbjct: 117 VAAGEALLDAD--MAQNVLDDFRD---KREELPSEKHADLNERETMILKLLAQGFSNQDI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A+ L IS  TV N ++ I  K     R+ A  YA+R  I
Sbjct: 172 ALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210


>gi|325917294|ref|ZP_08179515.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536514|gb|EGD08289.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 254

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 13/186 (6%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            + D  Q++          PF        +     Y   Q            +   +T P
Sbjct: 77  YQHDPVQQRATRRTT----PFVWSYRTDGNRPGVEYVGAQHRQVTRYLCDSGMGNGVTVP 132

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK 182
             +     +       +   +  +  +   +   +L    LLA A+QA   +  D    +
Sbjct: 133 LHLPGGAFA------TLSGAVDAVAAEAPRLAEAQLSPFLLLAHAFQARAQELLDPQERR 186

Query: 183 --DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE ECL + ++G T+  IA  L  S  TVN ++ S  RK   + R  A+   
Sbjct: 187 CHHIALTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRG 246

Query: 241 VRNNIV 246
           +   ++
Sbjct: 247 MHYRLL 252


>gi|322434963|ref|YP_004217175.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321162690|gb|ADW68395.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 209

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  +  ++ RE+E L  +S GK++  +A  L IS +TV N++ SI+ K     R+ A+
Sbjct: 139 AEYAMEDAVSPRELEVLQEVSRGKSNKIVAGDLNISEHTVKNHLKSILSKLDASDRTDAV 198

Query: 238 AYAVRNNIV 246
             A+R   +
Sbjct: 199 VIAIRRGYI 207


>gi|300782912|ref|YP_003763203.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792426|gb|ADJ42801.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 214

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y     +   I   +  +  +  I   D       +A      F    V     
Sbjct: 97  RAGARGYLLKDAEPDEIIRAVRAVARREAIFGPD-------IANRVLAFFNQPPVSEPVF 149

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELTGRE E L  I+ G ++  IA  L +S  TV N+I+++  K     R+ AI  A   
Sbjct: 150 PELTGREREVLALIAAGHSNSLIASTLCLSPKTVRNHISNVFAKLHVADRAEAIVRARDA 209

Query: 244 NI 245
            +
Sbjct: 210 GL 211


>gi|284045440|ref|YP_003395780.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949661|gb|ADB52405.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 228

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 23/185 (12%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + VR  +         + +  P   V  +   E+D Y             V   L    +
Sbjct: 60  MDVRMPVLDGIAATRELIARVPAAKVVILTTFEEDDY-------------VIGALRAGAS 106

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 +    L   +  +  G  LL P     + DRL E  +L         S D    
Sbjct: 107 GFLLKRSSPEDLRRAIHTVAAGDALLSPSVTRRVIDRLVEQPVL-------RPSSDARLS 159

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              ELT RE E L  +++G ++ EI   L +   TV +++  ++ K   + R  A+  A 
Sbjct: 160 ---ELTPREQEVLLLMAQGLSNREIVDALAVEETTVKSHVRRVLSKLGVRDRVHAVILAY 216

Query: 242 RNNIV 246
            + +V
Sbjct: 217 ESGLV 221


>gi|298250158|ref|ZP_06973962.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297548162|gb|EFH82029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1003

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 164  LLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            LL+A+          +       +L+ RE E L  ++ G ++ EIA  L I  NTV  ++
Sbjct: 919  LLSAFHGTHAPQPVQENVISLTEQLSQREQEVLHLLASGHSNAEIAETLIIGLNTVKTHL 978

Query: 222  ASIMRKTATKTRSGAIAYAVRNNIV 246
             +I  K  T  R+ AIA A   +++
Sbjct: 979  KNIYGKLGTHNRTQAIAQARTLHLL 1003


>gi|297622936|ref|YP_003704370.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164116|gb|ADI13827.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 478

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 2/146 (1%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-- 160
           ++       V  TL               S+  D+   +     L      +++D  W  
Sbjct: 317 RKLRTKSGAVLDTLVFAEAITLEGKPGLLSMFHDITLRKQTEAELLAAIDAVMQDATWFG 376

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              +    +A    + +       +LT RE + L  I+EG+ ++EIA+ LG+S+NTV NY
Sbjct: 377 RSVVERLLRARRGATAEAPGATLGDLTARERQVLELIAEGQKNEEIALALGLSKNTVRNY 436

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +A++  K   + R+ A+ +A    ++
Sbjct: 437 VANLYAKIGVQGRAEAVIWARERGVI 462


>gi|226365558|ref|YP_002783341.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244048|dbj|BAH54396.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 208

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  LT RE E LT +++G T+ E+   L IS  TV  ++A I  K    TR+ A++ A+
Sbjct: 143 PEEALTPREAELLTLLAKGMTNKELGKALFISEATVKTHLAHIYSKLGVDTRAAAVSVAL 202

Query: 242 RN 243
           R 
Sbjct: 203 RR 204


>gi|326772247|ref|ZP_08231532.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326638380|gb|EGE39281.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 230

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +  + +         P  L    F    +         + +     
Sbjct: 64  DVVCMDLRMSEGDGLTATRQIVAEREGGVPAVLVVTTFDMDADVFGALEAGADGFILKDC 123

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  L     ++ +     +    A +    ++ +        LT RE E + 
Sbjct: 124 EPEELVDAVRRLASGYGLVDQSVTRRVIAEFARRQGRVENREALGV----LTEREREVVQ 179

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +  +TV +++  I+ K   + R  A+ +A RN +V
Sbjct: 180 LLAGGMSNAEIAAELVVETSTVKSHLTRILPKIGARDRVQAVVWAFRNGLV 230


>gi|302337621|ref|YP_003802827.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634806|gb|ADK80233.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 214

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + EGK + EIA  L IS  TV ++I  I RK     R  A+  A    I
Sbjct: 152 LTTREKDVLRCMLEGKENKEIADELFISCETVKSHIKHIFRKLEVTNRVQAVQVAAEKKI 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|261493914|ref|ZP_05990423.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496858|ref|ZP_05993227.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307475|gb|EEY08809.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310417|gb|EEY11611.1| putative bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 583

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  +Q+ +    + H    + L+ RE+E LT IS G +++EIA  L IS+ TV+ +I +I
Sbjct: 65  LERHQSFVLTQAE-HTDLPYGLSKREIELLTLISSGLSNEEIANELCISKRTVDKHIENI 123

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             KT T++R+    +A+  ++V
Sbjct: 124 FAKTHTESRTLLAVFAITEHLV 145


>gi|197105485|ref|YP_002130862.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196478905|gb|ACG78433.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 255

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 154 ILRDRLWEIGLLA-AYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILG 211
           +   R  E+  LA  + A   ++     G     LT RE++ L W + GKT  EI  I+ 
Sbjct: 151 VFAARAAELHALALRFVATYAEATGALVGTSPAHLTRREIQVLKWAAAGKTDAEIGRIVS 210

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  +I +  RK     R+ A+  A     +
Sbjct: 211 ISTPTVRFHITNASRKLGVAGRAQAVHRAATLGYL 245


>gi|124024371|ref|YP_001018678.1| LuxR transcriptional regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964657|gb|ABM79413.1| Bacterial regulatory protein, LuxR family protein [Prochlorococcus
           marinus str. MIT 9303]
          Length = 92

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ 
Sbjct: 11  HISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMD 70

Query: 243 NNIV 246
           +  +
Sbjct: 71  HGKI 74


>gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
 gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
          Length = 245

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 16/189 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +Q L  +V SD     +    L +K +    L     +F        +         + Y
Sbjct: 59  QQMLPDVVISDVMMPRLDGYGLLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDY 118

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---------AYQANMFKSYD 177
               FD   +   +  +  +   +L++       ++G +A           QA    S D
Sbjct: 119 IPKPFDPDELVARVRNVAQRQHRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSKD 178

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                    T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  +
Sbjct: 179 PVV---HSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELV 235

Query: 238 AYAVRNNIV 246
            YA+ + +V
Sbjct: 236 RYALEHRLV 244


>gi|302529018|ref|ZP_07281360.1| response regulator [Streptomyces sp. AA4]
 gi|302437913|gb|EFL09729.1| response regulator [Streptomyces sp. AA4]
          Length = 220

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT REV+ L  ++ G+ + EIA  L +S  TV  ++  I  KT   TR+ A+ YA +
Sbjct: 156 EDGLTAREVDVLKLVAGGRRNREIARELQVSEATVKTHVNRIFAKTGCGTRAQAVRYAHQ 215

Query: 243 NN 244
           + 
Sbjct: 216 HG 217


>gi|297625882|ref|YP_003687645.1| LuxR family transcriptional regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921647|emb|CBL56204.1| Regulatory protein, LuxR:Response regulator receiver
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 232

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
           + + +  + T L   V     + I         Y + +   A +   +  +     +   
Sbjct: 87  QVHQIDPKITFLALSVSDAAEDVIAVIRAGARGYVTKSISTADLVEAIGRVATGDAVFSP 146

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            RL    L A   +   +S D    +   L+ RE E +  I+ G T  E+A  L IS  T
Sbjct: 147 -RLAGFVLDAFSGSISVESIDEDLDR---LSQREREVMKLIARGYTYKEVARELFISIKT 202

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++++++RK     R     +A    +V
Sbjct: 203 VETHVSNVLRKLQLSNRHELTKWATDRKLV 232


>gi|120403820|ref|YP_953649.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119956638|gb|ABM13643.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 207

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 15/171 (8%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
            P  ++  M L++ D          +    V    P +        +    +   V    
Sbjct: 43  QPAVVLMDMRLADGDG--------AQATAEVLAVSPSSRVLVLSASDERDDVLEAVKAGA 94

Query: 142 IGLMLLFPKGRII-------LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            G ++     + +        + R      LA      F+  +        LT RE E L
Sbjct: 95  TGYLVKSASKQELGDAVRATAQGRAVFTPGLAGLVLGEFRRIERDSPAGPTLTERETEIL 154

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +++G T+ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 155 RHVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQIGNRVELARYAIEHGL 205


>gi|328885370|emb|CCA58609.1| Response regulator containing a CheY receiver domain and an HTH
           DNA-binding domain [Streptomyces venezuelae ATCC 10712]
          Length = 237

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 3/153 (1%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  +          +    F T            + +         +   + ++     +
Sbjct: 66  EACRTIGAESGCRTVILTTFDTDAYVYEALHAGASGFLLKDVRRDDLVHAVRVVAAGDSL 125

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +         L+  Y A   +        D  LTGRE E L  ++ G ++ EIA  L +S
Sbjct: 126 LAPSVARR--LVEQYTAGGPRRTAPDPRLDV-LTGRERETLLLLARGLSNAEIAAELVVS 182

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TV  ++ +++ K   + R  A+  A    +V
Sbjct: 183 DHTVKTHVGNVLAKLGLRDRIQAVICAYETGLV 215


>gi|302525216|ref|ZP_07277558.1| predicted protein [Streptomyces sp. AA4]
 gi|302434111|gb|EFL05927.1| predicted protein [Streptomyces sp. AA4]
          Length = 511

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGREVE L  +++G ++ EIA  L +SR TV+ ++  I  K    TR+ A   A+R  +
Sbjct: 450 LTGREVEVLLQLAQGLSNPEIAAALTVSRKTVSTHLEHIYAKLGVTTRTQAALVAMRRGL 509


>gi|257057812|ref|YP_003135644.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587684|gb|ACU98817.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 250

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE + L  I+EG  +  +A  L +S  TV  ++ SI+RK   + R+ A++ A R
Sbjct: 171 DMPLSRREYQVLQLIAEGLENAAVADKLYLSVETVRTHVKSILRKLGARDRTHAVSKAFR 230

Query: 243 NNIV 246
           + ++
Sbjct: 231 SGLL 234


>gi|256833092|ref|YP_003161819.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256686623|gb|ACV09516.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 233

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 3/144 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-- 162
           P  +    F      +       + +         +   +  ++    +I       +  
Sbjct: 87  PRIIILTTFDLDEYALEAIRAGASGFLLKDAPPEEMLNAIRTVYSGDAVIAPSTTKRLLG 146

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++        +S          LT RE + +  I++GK++ EIA  L ++  TV  ++ 
Sbjct: 147 RMITPLPTETLESSPQA-STIASLTDRERDVMLLIAKGKSNTEIARELFVAEATVKTHVG 205

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I++K   + R   +  A  N +V
Sbjct: 206 RILQKFGARDRVQIVVAAYENGLV 229


>gi|21224130|ref|NP_629909.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|256784790|ref|ZP_05523221.1| two-component regulator [Streptomyces lividans TK24]
 gi|2995293|emb|CAA18322.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
          Length = 219

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  +T RE E L  ++EG TS EI  +L IS  TV  + A++++K   + R     YA+
Sbjct: 153 PERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAI 212

Query: 242 RNNIV 246
           R  ++
Sbjct: 213 RAGLI 217


>gi|229000917|ref|ZP_04160386.1| Response regulator receiver [Bacillus mycoides Rock3-17]
 gi|228758834|gb|EEM07909.1| Response regulator receiver [Bacillus mycoides Rock3-17]
          Length = 224

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I+ GK + EIA IL IS   V  ++ +I +K     R+ A+   +   
Sbjct: 162 PLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGICMQ 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|148240620|ref|YP_001226007.1| LuxR family transcriptional regulator [Synechococcus sp. WH 7803]
 gi|147849159|emb|CAK24710.1| Transcriptional regulator, luxR family [Synechococcus sp. WH 7803]
          Length = 92

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE+E +  +SEG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ 
Sbjct: 11  NVSLSARELEIIELVSEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 70

Query: 243 NNIV 246
           +  +
Sbjct: 71  HGKI 74


>gi|21243715|ref|NP_643297.1| AhyR/AsaR family transcriptional regulator [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21109298|gb|AAM37833.1| transcriptional regulator ahyR/asaR family [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 254

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183
           ++   +                    RL E  LL       A+Q+   +  D    +   
Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHH 189

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+A  +  
Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVARGMHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|1706700|sp|P54293|ESAR_ERWST RecName: Full=Transcriptional activator protein esaR
 gi|476612|gb|AAA82097.1| esaR [Pantoea stewartii subsp. stewartii DC283]
          Length = 249

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 25/197 (12%)

Query: 63  LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYY---------NVLQRPTELF 109
           L R + FQ    D ++ + +    PF     + L    ++          N++   T + 
Sbjct: 57  LYRANNFQ--LTDPVILTAFKRTSPFAWDENITLMSDLRFTKIFSLSKQYNIVNGFTYVL 114

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
               + L        G D           +  + ++L+         ++++    LA  +
Sbjct: 115 HDHMNNLALLSVIIKGNDQTALEQRLAAEQGTMQMLLID------FNEQMYR---LAGTE 165

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                + +    K    + RE E L W S GKT  EIA I GIS +TV  +I +++ K  
Sbjct: 166 GERAPALNQSADKTI-FSSRENEVLYWASMGKTYAEIAAITGISVSTVKFHIKNVVVKLG 224

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI   V  +++
Sbjct: 225 VSNARQAIRLGVELDLI 241


>gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 228

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 8/177 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHT-----LPENITPPAGMD 127
           SI  S+ P  ++  + +   D +     +         P         L   +   +   
Sbjct: 39  SIFESNPPDLVISDVMMPHMDGFEFCRRLRSSRLGQLVPFIFLSGQGELESKVEGHSIGG 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y    F    I   +     +   I  + +  +      Q  +         +   LT
Sbjct: 99  DDYLVKPFQPKEILAKVKGQLERSHRIHAEIVRLLQNSGVEQVKIPPPTVTPESQPLPLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E      + +G T+ +I+  L IS  TV  +++SI  K   + RS  + +A+   
Sbjct: 159 PAEERVFWEVIQGYTNKQISDRLFISPRTVQAHLSSIFSKLQLENRSQLVRFALEGG 215


>gi|94984423|ref|YP_603787.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554704|gb|ABF44618.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 214

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +D    +   + +L E  G     ++       + +     +  P  ++  + +
Sbjct: 1   MIRVLLVDDHALFRQGLRSLLESEGMR---VIGEAANGREAIRYAADTH-PDVILMDIQM 56

Query: 93  SEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            E D             R   +   ++                Y     D A +   +  
Sbjct: 57  PELDGVKATQSILEIDPRARVIMITMYRQDRYVFEAVKAGARGYVLKDADAATLLDAIRR 116

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +     ++  D       LA    + F  K  ++   K  +L  RE   L  +++G ++ 
Sbjct: 117 VASGEALLDAD-------LAQNVLDDFRDKREELPSEKHADLNERETMILKLLAQGFSNQ 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA+ L IS  TV N ++ I  K     R+ A  YA+R  I
Sbjct: 170 DIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210


>gi|186683493|ref|YP_001866689.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465945|gb|ACC81746.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 206

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +  G  +  +A  L IS +TV  +++SI +K +  +R+ A+A  VR  +
Sbjct: 144 LTPREIEVLGMLGSGLGNKAMAKRLQISEHTVKFHLSSIFQKLSVSSRTEAVAVGVRLGL 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|300741753|ref|ZP_07071774.1| two-component system response regulator [Rothia dentocariosa M567]
 gi|300380938|gb|EFJ77500.1| two-component system response regulator [Rothia dentocariosa M567]
          Length = 250

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 15/193 (7%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           + +E     +V  D    ++  +  ++     NV      +    F              
Sbjct: 58  MAEEGTAPQVVLMDVRMPIMDGLEAAKSILELNVPDSRVIMLT-TFDVDEYVYAAVRAGA 116

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWGKDF 184
           + +         +   +  +     +I      RL E  +      +   S ++      
Sbjct: 117 SGFLLKDAPPEELLGAIRTIHRGDAVIAPSATRRLLEHMIPVLEVHSEQDSANIAPTSQE 176

Query: 185 E-----------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           E           L+ RE E L  I++G ++ EI+  L +S  T+  +++ ++ K   + R
Sbjct: 177 EPQLLHQELMQTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLAKLDARDR 236

Query: 234 SGAIAYAVRNNIV 246
             A+  A    IV
Sbjct: 237 VQAVIMAYEAGIV 249


>gi|163839607|ref|YP_001624012.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953083|gb|ABY22598.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 219

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 4/162 (2%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF--DVARIRIGL 144
           VR   L+  +    +L         +  T   +      +            +A   +  
Sbjct: 56  VRMPELNGLEAAKLILAGWYYTKILMLTTFDIDDYVYDALSLGASGFLLKDALADELVSA 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L   + +  L+  +  +  +S   +  +   LT RE E LT +  G ++ 
Sbjct: 116 VRIVASGEALLAPSVTKR-LIENFAKSRPRSA-ANKTRLNNLTDREREVLTLVGRGLSNQ 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L I+  TV  +++ ++ K   + R  A+  A    +V
Sbjct: 174 EIAAALFIAEQTVKTHVSKVLTKLDLRDRVQAVVLAYDTGLV 215


>gi|21654819|gb|AAK76734.1| quorum sensing regulator SprR [Serratia proteamaculans]
          Length = 249

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 69/200 (34%), Gaps = 29/200 (14%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------------FHTLPENIT 121
           D ++ S +P + V    ++       V+    +   P              F  +     
Sbjct: 43  DVLIISSYPDEWVDLYRVNNFQLTDPVILTAFKRTSPFTWDENITLMSDLKFTKIFSLSK 102

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL---------------WEIGLLA 166
               ++     L   +  + +  +++    +  L +RL                ++  LA
Sbjct: 103 RYNIVNGFTFVLHDHMNNLALLSVIIDNNKQGALEERLSSERGTMQMLLIDINEQMYRLA 162

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
              ++  + +     K    T RE E L W S GKT  EIA I  IS +TV  ++ +I+ 
Sbjct: 163 GSVSSSRQRHHADEDKPI-FTPRENEVLYWASMGKTYGEIATIASISLSTVKFHMGNIVV 221

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K        AI   V   ++
Sbjct: 222 KLGVSNARQAIRLGVELELI 241


>gi|330899624|gb|EGH31043.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 642

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 13/164 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L+  +A++++        R  E    +  +LP          +    + F   +  IG
Sbjct: 490 AKLLGLIAMTQQIGLLLSQARCDEARALLLRSLP--------AASGGALIPF---KALIG 538

Query: 144 LMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
               +   +++ L     +  LL    A    S +   G D  L+ RE+  L  I++G +
Sbjct: 539 EHPRWLHEQLLHLPPCRVQAALLEKLPACCTPSPEPAHGGDC-LSVRELGVLQLIAQGCS 597

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI+  L IS +TV  + + I  K   + R+ A+A A    ++
Sbjct: 598 NQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGLL 641


>gi|188533099|ref|YP_001906896.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99]
 gi|188028141|emb|CAO95998.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99]
          Length = 240

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 15/202 (7%)

Query: 55  YVGASHFLLVRWDLFQEQKL---DSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTE 107
             G +++       ++E+ L   D +V +      PF     +      ++  +  R  E
Sbjct: 40  IFGVTNYPGEWVKQYREKGLQYTDPVVITSLNRLTPFAWDENLLAGSGFRFSKLFDRARE 99

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL 164
                F             +N   +L+F      R       +  KG I L         
Sbjct: 100 -----FGVTNGYTFVLHDYNNNLVTLSFTFTPECRAEATETFIKNKGEISLLLASVHETY 154

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L     +   +           T RE E L W S GKT  E A+ILGI   TV  ++++I
Sbjct: 155 LTLTSLSEKNASRSRSENASRFTERENEILYWASVGKTYPETAMILGIKTCTVKFHMSNI 214

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           ++K        AI   +   ++
Sbjct: 215 VKKLGVANARHAIRLGMELQLI 236


>gi|313764565|gb|EFS35929.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313807407|gb|EFS45894.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313816106|gb|EFS53820.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818453|gb|EFS56167.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820216|gb|EFS57930.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313822975|gb|EFS60689.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827995|gb|EFS65709.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|314915562|gb|EFS79393.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918484|gb|EFS82315.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314919972|gb|EFS83803.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314925444|gb|EFS89275.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931985|gb|EFS95816.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955854|gb|EFT00254.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958335|gb|EFT02438.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314960110|gb|EFT04212.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314978316|gb|EFT22410.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314987819|gb|EFT31910.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990039|gb|EFT34130.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315084426|gb|EFT56402.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315085766|gb|EFT57742.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315088816|gb|EFT60792.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315098426|gb|EFT70402.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101218|gb|EFT73194.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315108440|gb|EFT80416.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327332048|gb|EGE73785.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327453760|gb|EGF00415.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328753578|gb|EGF67194.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
          Length = 218

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 10/176 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V    P  ++  + +   D       ++  +++   +  T   +      +D      
Sbjct: 40  DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99

Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D   +  GL  +     ++  +    +   + +Q        V   K  +LT RE
Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGT-----VTGSKAEQLTARE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E    ++ G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|311897337|dbj|BAJ29745.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMD 127
           + +V    P  ++  + + + D   +VL+R   L  P        F T     T      
Sbjct: 41  ERMVRELAPRVVLLDVRMPDLDG-ISVLRRLRALPEPPAVAMLTTFDTDEHIGTALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +        ++   + +L   G ++         +++ Y      +          LT
Sbjct: 100 AGFLLKDTAPEQLVHAVRVLAAGGSVLSPS--VARTVISGYV-EGGAADTTAATLTGRLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE++ L  + EG ++ EIA  L +   TV ++I++I+ K     R  A   A R  +V
Sbjct: 157 GRELDVLALLGEGLSNAEIADRLFLGTGTVKDHISAILGKLGAANRVQAAVIAHRAGLV 215


>gi|226363539|ref|YP_002781321.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226242028|dbj|BAH52376.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 224

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 9/156 (5%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFP 149
           S  D    +L+R   L   V     ++ +  A +      Y     D   +   +  +  
Sbjct: 71  SGVDATRRLLERHPALRVLVVTMHEDDESLVASVRAGARGYLVKGADPGEVERAVRAVAN 130

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              I+         + A   + M  S  +      ELT RE E L  ++ G  +  I+  
Sbjct: 131 GEMIL------GAAVAARAMSFMAASRRMEPAVFPELTDREREVLDLVARGYDNASISRR 184

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L +S  TV N++++++ K     R  AI  A    +
Sbjct: 185 LVLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 220


>gi|171913285|ref|ZP_02928755.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 207

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 42/98 (42%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              R  L   L  +    +Y     +           ++ RE E L  I++G  + +IA 
Sbjct: 108 TASRDELLTALRRVAAGGSYLPPELEQRLADLRLCVGISMREREILELIAKGHANKQIAA 167

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  IS +TV  +++ I+ K     R+ A A A+R  IV
Sbjct: 168 LFAISEDTVKRHVSHILEKLGVHDRAQATAEAIRRGIV 205


>gi|158338160|ref|YP_001519337.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158308401|gb|ABW30018.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 238

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I  G ++  IA  L IS  TV  ++ SI+ K     R+ A   A+R+ 
Sbjct: 176 PLTDRELEVLELIVAGCSNAVIADKLYISVGTVKTHVRSILNKLCADDRTQAAVRALRSG 235

Query: 245 IV 246
           +V
Sbjct: 236 LV 237


>gi|37523606|ref|NP_926983.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35214611|dbj|BAC91978.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 90

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 43/59 (72%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE++ L  +++G T+++IA +L IS+ TV+N++++I++KT TK R   + +A++  
Sbjct: 11  LSDREMQILELVAQGHTNEDIAEVLEISKRTVDNHVSNILQKTKTKNRVELVRWALQWG 69


>gi|311064578|ref|YP_003971303.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310866897|gb|ADP36266.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 248

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 12/147 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----- 166
           V   +    +     D    +L   +  +  G  ++ P     L +++ E G        
Sbjct: 102 VMAAINAGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTA 161

Query: 167 ----AYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               A  ++           D EL   T RE E L  I+ G ++ EIA  L IS  T   
Sbjct: 162 TDGYADGSSTIPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKT 221

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++A I+ K   + R  A+ +A  N +V
Sbjct: 222 HVAHILAKINARDRVQAVVFAYDNGLV 248


>gi|307324486|ref|ZP_07603693.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889730|gb|EFN20709.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 215

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             +      E  L  +    +F+S  V   +   L+GRE E L  +  G T+ EI   L 
Sbjct: 123 DAVQTAARGETVLTPSLAGKLFRSRTV---EPSPLSGREREVLRLVGRGLTNSEIGTELF 179

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  TV  ++    RK     R+ A+  A+    +
Sbjct: 180 VSEATVKTHLLRSYRKLGVSDRTAAVMKAMERGFL 214


>gi|21222053|ref|NP_627832.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256786858|ref|ZP_05525289.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289770753|ref|ZP_06530131.1| two-component system regulator [Streptomyces lividans TK24]
 gi|4753862|emb|CAB42025.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
 gi|289700952|gb|EFD68381.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 221

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 50/123 (40%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++  G+ ++     ++       +    +  +   +         
Sbjct: 96  RAGASGFLLKDASARQLADGVRVVAAGEALLAPSITKRLITEFSKLSETPRLMPSAQAAY 155

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A   
Sbjct: 156 GDLTDRETEVLVLIAQGLSNGEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 215

Query: 244 NIV 246
            +V
Sbjct: 216 RLV 218


>gi|289768678|ref|ZP_06528056.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289698877|gb|EFD66306.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 220

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  +T RE E L  ++EG TS EI  +L IS  TV  + A++++K   + R     YA+
Sbjct: 154 PERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAI 213

Query: 242 RNNIV 246
           R  ++
Sbjct: 214 RAGLI 218


>gi|291302120|ref|YP_003513398.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571340|gb|ADD44305.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 5/194 (2%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            + VG +       DL +E   D I   D     +  +  + +      L     +    
Sbjct: 27  IDVVGEASTGAEAVDLARETVPD-IALVDVQMPEMDGIEATRRIAADPALSSVRVVILTN 85

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           +              + +     +   +   +  +     ++  +      L+A + A  
Sbjct: 86  YALDEYIFDALRAGASGFLVKDTEPEELIRAVRTVAVGEALLAPNVTRR--LIAEFAA-- 141

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D        LT RE E +T + +GK+++EI+ +L IS  T   +++  M K  ++ 
Sbjct: 142 TPRVDGPAPLVSALTPREREVVTLVGQGKSNEEISRLLHISHTTAKTHVSRAMTKLGSRD 201

Query: 233 RSGAIAYAVRNNIV 246
           R+  +  A  + +V
Sbjct: 202 RAQLVVAAYESGLV 215


>gi|289208427|ref|YP_003460493.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288944058|gb|ADC71757.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp.
           K90mix]
          Length = 232

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE+E L  +  G+T+  IA  L IS +TV +++ +I RK   K R+ AI +A
Sbjct: 155 LTQRELEILAMLGSGETNMNIAKQLFISEHTVKSHLYNIFRKIEVKNRTQAINWA 209


>gi|148272451|ref|YP_001222012.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830381|emb|CAN01316.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 232

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E LT ++EG T+ EIA  L +S +TV  ++  ++ K   + R  A+  A    
Sbjct: 167 PLTARELEVLTALAEGLTNQEIAGRLYLSESTVKTHVGRVLAKLEVRDRVQAVILAYDCG 226

Query: 245 IV 246
           +V
Sbjct: 227 LV 228


>gi|300791059|ref|YP_003771350.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800573|gb|ADJ50948.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 218

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G ++ EIA  L +S  TV  ++  I+ K   + R  A+  A    +
Sbjct: 153 LTDREREVLVLIAKGMSNLEIADALFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGL 212


>gi|238061662|ref|ZP_04606371.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883473|gb|EEP72301.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 223

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG ++ E+A  L +S  TV +++A I+ K   + R  A+  A R  +
Sbjct: 157 LTARELEVLRLLAEGLSNAELAERLHLSEATVKSHVARILAKLGLRDRVQAVVVAYRTGV 216


>gi|284034798|ref|YP_003384729.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283814091|gb|ADB35930.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 216

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D R   L   V  +  G  LL P              L+A    N
Sbjct: 89  VYDALYAGASGFLLKDVRRDDLVHAVRVVAAGESLLAPS---------VTRRLIADLTRN 139

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++  V   +   LT RE E L  +  G ++ EIA  L +S +TV  ++++ + K   +
Sbjct: 140 RPRAGRV--AELDALTSREREILLLLGRGLSNAEIAAALTVSEHTVKTHVSNTLTKLGLR 197

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    ++
Sbjct: 198 DRVQAVIAAYETGLI 212


>gi|223937694|ref|ZP_03629596.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893666|gb|EEF60125.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 210

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             L  RE E L W+++GK++ +IA ILGIS  TV  ++  I  K   ++R+ A   A+ 
Sbjct: 143 LGLAPREAEVLLWVTQGKSNGDIASILGISEWTVKKHLLHIFEKLGVESRNAATLRALE 201


>gi|186474125|ref|YP_001861467.1| LuxR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196457|gb|ACC74421.1| transcriptional regulator, LuxR family [Burkholderia phymatum
           STM815]
          Length = 361

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E +  I+ G+ + +IA  LG+S  TV N+I +I  K   ++R+ AI  A +  
Sbjct: 297 LTRREREIVELIAGGRDNAQIAARLGLSEKTVRNHITNIFAKLEVESRAQAIVLARKAG 355


>gi|116054260|ref|YP_788704.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254243626|ref|ZP_04936948.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192]
 gi|115589481|gb|ABJ15496.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126197004|gb|EAZ61067.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192]
          Length = 496

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189
                D++  R   M L      +++D  W    L    AN+ ++     G +  +LT R
Sbjct: 370 LVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAELADLTAR 429

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E E    I +G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 EREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484


>gi|134097553|ref|YP_001103214.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910176|emb|CAM00289.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EIA  L I   TV  ++ +++ K   + R+ A+ +A  +  
Sbjct: 146 LTEREAEVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGF 205

Query: 246 V 246
           V
Sbjct: 206 V 206


>gi|145225590|ref|YP_001136268.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|315445943|ref|YP_004078822.1| LuxR family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|145218076|gb|ABP47480.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
 gi|315264246|gb|ADU00988.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. Spyr1]
          Length = 209

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 33/66 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G    LT RE E L  +  G ++  IA  L I   TV  +++SI RK     R+ A+A 
Sbjct: 142 PGARQGLTQRESEILALVVNGLSNRAIAAKLIIGDETVKTHLSSIYRKLGVSDRTAAVAT 201

Query: 240 AVRNNI 245
           A+R  I
Sbjct: 202 ALREGI 207


>gi|116620874|ref|YP_823030.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224036|gb|ABJ82745.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 247

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++      +   L+ RE E +  +++G  + E+A  + IS  TV N++ +I  K     R
Sbjct: 172 QAPPTRERERSPLSQREREIVALVAQGFKNKEMAEKMFISEQTVKNHLHNIFDKLGVSDR 231

Query: 234 SGAIAYAVRNNI 245
                YA+ NN+
Sbjct: 232 LELALYAIHNNL 243


>gi|269125551|ref|YP_003298921.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310509|gb|ACY96883.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 215

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 49/102 (48%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +L+      +  D L    +     A++ +           LT RE++ +  ++ G+T++
Sbjct: 113 LLVEAVRAAVRGDALVSPSVTVRLLAHLTRPQRPARRPAEPLTERELQVVRLVARGRTNE 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S +TV  ++ ++ RK A + R    A+A  + IV
Sbjct: 173 EIAGELFVSLSTVKTHLGNVQRKLAARNRVEIAAWAWESGIV 214


>gi|145596350|ref|YP_001160647.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
 gi|145305687|gb|ABP56269.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
          Length = 268

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FEL 186
                                    ++   R  +    A   A +         +    L
Sbjct: 148 GGRAPADPPSGWPAGAAEGAGGAPTVVPAQRGDDPADPAGELAAVPAGGPAREPRPAVGL 207

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE++ L  ++EGK++ EI   L +S +TV  +   + RK   + R+ A+A   R  +V
Sbjct: 208 TERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRAGLV 267


>gi|330470066|ref|YP_004407809.1| regulatory protein LuxR [Verrucosispora maris AB-18-032]
 gi|328813037|gb|AEB47209.1| regulatory protein LuxR [Verrucosispora maris AB-18-032]
          Length = 228

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
               +   L   V     + I         Y + T     +   +  +     +      
Sbjct: 86  RSHPQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELAAAIRRVADGDAVFSP--- 142

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNT 216
                LA +  + F +       D EL   T RE E L  ++ G    EIA  L IS  T
Sbjct: 143 ----RLAGFVLDAFAARPDAPVADPELDQLTNREREVLRLLARGYAYKEIARELYISIKT 198

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++++++RK     R     +A    +V
Sbjct: 199 VETHVSNVLRKLQMSNRYELSRWAADRRLV 228


>gi|171913297|ref|ZP_02928767.1| two-component system regulatory protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 239

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I+ G+++  IA  +GI+ +TV  ++  I+ K     R+ A A A+R  I+
Sbjct: 146 TPREREVLELIASGQSNKRIAAAIGITEDTVKRHVTHILEKLGVNDRAQATAEAIRRGII 205


>gi|319944660|ref|ZP_08018927.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
 gi|319742099|gb|EFV94519.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
          Length = 233

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE E +  ++ G+++ EIA  L ++ +TV  ++ +I++K    +R     YAV
Sbjct: 165 ERVHLTAREREIMQCLARGESNKEIARRLDVAESTVKIHVQNILKKLNLSSRVQIAVYAV 224

Query: 242 RNNI 245
            N +
Sbjct: 225 ENGL 228


>gi|326779789|ref|ZP_08239054.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326660122|gb|EGE44968.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 244

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 7/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +A +        L     +    F      +       + +     
Sbjct: 66  DVVLMDIRMPGTDGLAATRMISADPELSAVRVVMLTTFEVDEYVVQSLRAGASGFLGKGA 125

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190
           +   +   + +      ++        GL+A + A    S +     ++      LTGRE
Sbjct: 126 EPDELLNAIRIAAAGEALLSPAATK--GLIATFLAQGGSSGEGLDSAEYAERLAALTGRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++ G ++D IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 184 REVLVQVAGGHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 239


>gi|239939951|ref|ZP_04691888.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986435|ref|ZP_04707099.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 206

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++EG T+ EI   L I  +TV  ++  I  K     R+ A+  A+R+ +
Sbjct: 146 LSERETQVLRLVAEGCTNAEIGRKLFIGESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGL 205

Query: 246 V 246
           +
Sbjct: 206 L 206


>gi|226362510|ref|YP_002780288.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240995|dbj|BAH51343.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 127

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 2/104 (1%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            V      L       R++L        + A   A    +       D  LTGRE E L 
Sbjct: 18  HVDDRAARLRAASALERVLLSGAHANSCVHAGLAARAETACPSDH--DDPLTGREHEILG 75

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            I++G ++ EI   L ISRNTV  ++++I+RK +   R+ A+A 
Sbjct: 76  MIADGASNAEIGRDLFISRNTVRFHVSNILRKMSVNNRTAAVAK 119


>gi|197335823|ref|YP_002157200.1| regulatory protein CsgD [Vibrio fischeri MJ11]
 gi|197317313|gb|ACH66760.1| regulatory protein CsgD [Vibrio fischeri MJ11]
          Length = 214

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             LT RE E L  ++ G ++ +IA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 148 ISLTTRESEILRLLASGASNVDIANSLFVSENTVKTHLYNVFKKLNVKNRLQAMMWA 204


>gi|330969335|gb|EGH69401.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 909

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDF 184
           SL        +    L  +    L ++L ++        LL    A    S +   G D 
Sbjct: 788 SLPAASGGALMPFKALLGEHPEWLHEQLVQLPPCRVQAALLEKLPACCTPSPEAAHGGDC 847

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    
Sbjct: 848 -LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLG 906

Query: 245 IV 246
           ++
Sbjct: 907 LL 908


>gi|325104166|ref|YP_004273820.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
 gi|324973014|gb|ADY51998.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
          Length = 217

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +         + Y  + F +  +  G   L  +  + L + +  IGL     A   +  D
Sbjct: 97  KGANAYLLKKSSYEEMLFAINHVAKGGRYLCDELSMDLIENMNNIGL---DLAGKTRLID 153

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                + EL+ RE+E L  ISEG T+ EIA  L +S+ TV  +  +++ KT  K  +  I
Sbjct: 154 -----EIELSDRELEVLGLISEGLTNIEIANKLFLSKRTVEGHRQNLINKTKVKNSAALI 208

Query: 238 AYAVRNNIV 246
            YAV+N ++
Sbjct: 209 KYAVKNGLI 217


>gi|293491180|gb|ADE45144.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183
           ++   +                    RL E  LL       A+Q+   +  D    +   
Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHH 189

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +  
Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|188586689|ref|YP_001918234.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351376|gb|ACB85646.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 212

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 33/74 (44%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                +      +      LT RE E L  + +G T+ EIA  L I   TV  ++++I+ 
Sbjct: 132 GQVTKLMMERRENESAYLNLTNREKEVLRLLGKGFTNQEIADELYIGIKTVKTHVSNILD 191

Query: 227 KTATKTRSGAIAYA 240
           K   K R+ A  YA
Sbjct: 192 KLELKDRTQAAIYA 205


>gi|119964473|ref|YP_946300.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119951332|gb|ABM10243.1| putative Transcriptional regulator, LuxR-family [Arthrobacter
           aurescens TC1]
          Length = 424

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S       ++ L  RE+E L  ++ G+ +  IA  LGIS NTV  ++ ++ RK   ++R
Sbjct: 352 PSTPAGDVAEWGLAARELEVLQLLAAGQRNRTIATDLGISENTVKFHLRNLFRKLDVRSR 411

Query: 234 SGAIAYAVRNNI 245
           + AIA A    +
Sbjct: 412 TEAIALAHSAGL 423


>gi|10957401|ref|NP_051615.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460830|gb|AAF12534.1|AE001826_3 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 209

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 87  VRCMALSEKDKYYNVLQ----RP-TELFCPVFHTLPENI--TPPAGMDNRYCSLTFDVAR 139
           V  + L   D      +     P   +     H L E +  +  +G D  YC  +     
Sbjct: 55  VVDIGLPGMDGIATAREIKRRWPGVRIVMLTAHDLREEVFASLASGADA-YCLKSASPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + + +         +          +A +     +  + H      LT RE++ L  I++
Sbjct: 114 LLLAIRAAAAGSAYLDP-------QVAHHVLGGVRMPEAHS----PLTPRELDILRLIAD 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + +IA  LG+S +TV  +I  I+ +     R+ A   A+R  ++
Sbjct: 163 GLPNKDIAEALGVSVSTVKLHIQDILHRLQAADRTQAAVKALRAGLL 209


>gi|186681901|ref|YP_001865097.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464353|gb|ACC80154.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 240

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + + LT RE+E L  I  G ++ +IA  L I+  TV  ++ +I+ K     R+ A   A+
Sbjct: 175 ETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 234

Query: 242 RNNIV 246
           R+ +V
Sbjct: 235 RSGLV 239


>gi|271970494|ref|YP_003344690.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513669|gb|ACZ91947.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 52/174 (29%), Gaps = 8/174 (4%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-----FHTLPENITPPAGMDNRYCS 132
           V    P  L+  + +   D          E    V     F              + +  
Sbjct: 44  VREHRPDLLLLDIRMPRMDGIAAARVVCEETDTKVLMLTTFDQDDYVYDALHAGASGFLL 103

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   + ++     ++          L                    LT RE E
Sbjct: 104 KDVRRDDLVQAVRVVAGGESLLAPSVTRR---LIDDMVRRRARPPAPAAALDMLTARERE 160

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +  G ++ EIA  + +S +TV  ++++++ K   + R  A+  A    ++
Sbjct: 161 TLELLGRGLSNAEIAATMVVSEHTVKTHVSNVLTKLGLRDRVQAVITAYETGLI 214


>gi|237653295|ref|YP_002889609.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|237624542|gb|ACR01232.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 243

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L +I+ G+++ EIA  L ++ +TV  ++ +++RK    +R  A  +AV N 
Sbjct: 177 KLSPREREILRFIARGQSNKEIARALELAESTVKIHVQNMLRKLNLSSRVQAAVFAVENG 236

Query: 245 I 245
           +
Sbjct: 237 L 237


>gi|89055684|ref|YP_511135.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88865233|gb|ABD56110.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 243

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 37/249 (14%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----D 81
           +    D    +I +    +    M  L + +G          L   ++   + SS    +
Sbjct: 2   IQRLQDFSEDIIGMTGPRAVWAGMAHLADDLGMP-----FCTLTMARRAPDLRSSQFITN 56

Query: 82  WPFDLVRCM---ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
            P               D + +++    ++    F T P+++         +  LT    
Sbjct: 57  LPAPFQDTYCEGGFINDDPFLSLI--CRDMTAAGFMTDPDDLPEADQRQGAFLDLTRSFG 114

Query: 139 RIRIGLMLLFPKG---------------------RIILRDRLWEIGLLAAYQANMFKSYD 177
                 + +                         R I   +L   GL+A  + ++     
Sbjct: 115 VGTALCIPVRTTRQSEFGGWVIGGDLRARDVADGREIAAMQLQLAGLIAFERLSVLTRQA 174

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE ECL W+S G    +IA  L IS + V+ YI +  RK   +TR  A+
Sbjct: 175 NHAHRR--LSPRERECLQWLSAGLRVTQIAHRLDISESAVHLYIKNARRKFGARTREQAV 232

Query: 238 AYAVRNNIV 246
           A+A+ +  +
Sbjct: 233 AHAIVSGEI 241


>gi|317405306|gb|EFV85631.1| nitrate/nitrite response regulator protein [Achromobacter
           xylosoxidans C54]
          Length = 223

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
             L +        +    +LT  + R   G  ++       L ++      LAA      
Sbjct: 93  QALRDGARGYLLKNIDAEALTSAIRRAAAGEPVIAESMTAKLVEQFRGQASLAAQA---- 148

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                   +   LT RE + +  ++ G ++  IA  L +S +TV  ++ ++++K    +R
Sbjct: 149 ---PAGQAERHRLTARERQIVQCLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSR 205

Query: 234 SGAIAYAVRNNI 245
                YAV + +
Sbjct: 206 VQVAVYAVEHGL 217


>gi|291575300|gb|ADE10225.1| LigR1 [Actinoplanes liguriensis]
          Length = 217

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  +L          D++   L   V  +  G+ +L P+   I          +      
Sbjct: 88  VLESLRGGACGFLLKDSQPEQLVAAVRALASGVTVLAPEASSI----------MLGAACR 137

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + +    +  +L+ RE   L  I +G T+ EIA  L IS +TV  Y++ I+RK    
Sbjct: 138 GTPAAENAVDEVKQLSDREQAVLGLIGQGLTNAEIAGRLFISDSTVKEYVSVILRKLGVA 197

Query: 232 TRSGAIAYAVRNNI 245
            R  A   A    +
Sbjct: 198 NRVQAAVLAYAAGL 211


>gi|206577986|ref|YP_002236599.1| transcriptional regulator, LuxR family [Klebsiella pneumoniae 342]
 gi|288933581|ref|YP_003437640.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206567044|gb|ACI08820.1| transcriptional regulator, LuxR family [Klebsiella pneumoniae 342]
 gi|288888310|gb|ADC56628.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22]
          Length = 217

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 146 LLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+     ++  ++  E+ ++  A Y A+   +      ++  LT RE E L  +  G T+
Sbjct: 119 LIEGVKAVLNGEQTAELSVMHPAMYAADHASAP----VENSPLTERECEILNELRCGATN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA  L IS NTV  ++ ++ RK + K R+ A+++A  +
Sbjct: 175 LDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 214


>gi|332528620|ref|ZP_08404602.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332041936|gb|EGI78280.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 336

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 4/150 (2%)

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT----FDVARIRIGLMLLFPKGRI 153
           Y   +  P  +  PV   L  ++        R   L       V +    L L   +   
Sbjct: 177 YGEPVPGPAHVPEPVLTWLRLSVEHVLEAQARGEPLAEPPRLSVEQGARRLTLRLHQRND 236

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
                      +   Q    +S        F LT +E E L W+ +GK + +I  ILG S
Sbjct: 237 DGATSAAAGDWMLIMQEASDESVIEAISLSFRLTAKEAEVLYWVIKGKINRDIGDILGSS 296

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             TV  ++  +  K   +TR+ A A A+  
Sbjct: 297 PMTVKKHLERVYAKLGVETRTAAAALAMNR 326


>gi|326332943|ref|ZP_08199200.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325949301|gb|EGD41384.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG ++ EIA  L IS  TV  +  +I+ K   + R+    YA+R  +
Sbjct: 158 LTEREDEVLKLIAEGHSTREIARELTISYKTVERHRENILAKLGLRDRTQVTRYAIRAGL 217

Query: 246 V 246
           +
Sbjct: 218 I 218


>gi|297162250|gb|ADI11962.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 217

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 5/142 (3%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F              + +       A I   + L      ++    +     
Sbjct: 78  PRILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLAAEGESLLFPAAVRSFAA 137

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                    ++ D        LT RE E L  ++ G T+ EIA  L I   TV  +++++
Sbjct: 138 ARGGNKRAREAMDRAA-----LTEREAEVLRLMARGLTNAEIAGHLVIGAETVKTHVSAV 192

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R+ A+  A  +  V
Sbjct: 193 LAKLGARDRTQAVIAAYESGFV 214


>gi|238061007|ref|ZP_04605716.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237882818|gb|EEP71646.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 231

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 10/147 (6%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            +   L   V     + I         Y + T     +   +  +     +         
Sbjct: 92  PQVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELAAAIRRVADGDAVFSP------ 145

Query: 163 GLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             LA +  + F +       D EL   T RE E L  ++ G    EIA  L IS  TV  
Sbjct: 146 -RLAGFVLDAFAARPDAPVADPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVET 204

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++RK     R     +A    +V
Sbjct: 205 HVSNVLRKLQMSNRYELSRWAADRRLV 231


>gi|306834744|ref|ZP_07467810.1| LuxR family DNA-binding response regulator [Corynebacterium
           accolens ATCC 49726]
 gi|304569381|gb|EFM44880.1| LuxR family DNA-binding response regulator [Corynebacterium
           accolens ATCC 49726]
          Length = 205

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 16/178 (8%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             +     +V  D     V  +  +   K       P  L    + T  + +        
Sbjct: 44  ADDAPEVDVVVCDIQMPGVDGITAT---KKLTEAGGPPVLILTTYDTQADILAAVEAGAM 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   ++    + R +  +    + LLA                +  L+ 
Sbjct: 101 GYLLKDSPEEELHEAVLNTAARQRTLAPEV---VNLLAQRVGQ----------PEQSLST 147

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++ G ++ E+A  L IS  TV  ++  I +K    TR+ A+  A    ++
Sbjct: 148 RELEILRALATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205


>gi|291443382|ref|ZP_06582772.1| two-component system [Streptomyces roseosporus NRRL 15998]
 gi|291346329|gb|EFE73233.1| two-component system [Streptomyces roseosporus NRRL 15998]
          Length = 207

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++EG T+ EI   L I  +TV  ++  I  K     R+ A+  A+R+ +
Sbjct: 147 LSERETQVLRLVAEGCTNAEIGRKLFIGESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGL 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|258651449|ref|YP_003200605.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554674|gb|ACV77616.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 198

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             L          +       +  LT RE++ L  +S+G+++ EI   L +S +TV  + 
Sbjct: 113 AALADTLTTPRLPALRDTPDGEAPLTEREMQVLRGMSQGQSNGEIGRELFLSEDTVKTHA 172

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             + RK   + R+ A+A   R   V
Sbjct: 173 RRLFRKLGARDRAQAVALGFRRGFV 197


>gi|119513102|ref|ZP_01632155.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119462236|gb|EAW43220.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 240

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + + LT RE+E L  I  G ++ +IA  L I+  TV  ++ +I+ K     R+ A   A+
Sbjct: 175 ETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 234

Query: 242 RNNIV 246
           R+ +V
Sbjct: 235 RSGLV 239


>gi|317125093|ref|YP_004099205.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589181|gb|ADU48478.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 238

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 48/153 (31%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +   +     +  T +         +++            +        +  +     G 
Sbjct: 80  ARLAQGSRPGRPRTRILILSASGDSKDVLEAVKAGALGYLVKSAGREEFLAAVRSTAAGE 139

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +   RL  + L    +     +         ELT RE E L +++ G    EIA  L +
Sbjct: 140 PVFTARLAGLVLGEFRRVRSEAADSASRRAVPELTDRETEILKYVATGMGYKEIAAALFL 199

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV N++ +I  K     R     +A    I
Sbjct: 200 SHRTVQNHVQNIFGKLHLNNRVELARFAYERGI 232


>gi|255325940|ref|ZP_05367030.1| NarL family two-component response regulator [Rothia mucilaginosa
           ATCC 25296]
 gi|255296955|gb|EET76282.1| NarL family two-component response regulator [Rothia mucilaginosa
           ATCC 25296]
          Length = 287

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 74/210 (35%), Gaps = 30/210 (14%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +  T      +Y+     GAS FLL       EQ L++I +        R  A+      
Sbjct: 103 MLTTFDIDEYVYSAV-RAGASGFLLKDTPP--EQLLEAIRTVH------RGDAVIAPSAT 153

Query: 99  YNVLQRPTELF---CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
             +L++   +     PV  T P   + PA         T   A   +      P G    
Sbjct: 154 RRLLEQMIPVLDSPAPVVPTAPAAESVPA---------TPPAAGSELPKATFIPAGHASP 204

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            +  ++      Y          H     +L+ RE E L  I+ G ++ EI   L +S  
Sbjct: 205 ANSSYQSEPAQDY---------PHRELIEQLSPREFEVLGLIARGLSNAEITRELVLSEA 255

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TV  +++ ++ K   + R  A+  A    I
Sbjct: 256 TVKTHVSHVLAKLGARDRVQAVIMAYEAGI 285


>gi|291298679|ref|YP_003509957.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567899|gb|ADD40864.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 386

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 41/61 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L+ ++ G ++ ++A  LGIS  TV  ++++++RKT T +R+ A  +AV + 
Sbjct: 299 ELTAREKEVLSCLAAGMSNRQVAKSLGISVRTVTVHVSNLLRKTGTGSRTEAALWAVEHG 358

Query: 245 I 245
           +
Sbjct: 359 L 359


>gi|152971901|ref|YP_001337010.1| DNA-binding transcriptional regulator CsgD [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896480|ref|YP_002921218.1| DNA-binding transcriptional regulator CsgD [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150956750|gb|ABR78780.1| putative bacterial regulatory protein, LuxR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548800|dbj|BAH65151.1| putative LuxR-family bacterial regulatory protein [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 217

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 146 LLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+     ++  ++  E+ ++  A Y A+   +      ++  LT RE E L  +  G T+
Sbjct: 119 LIEGVKAVLNGEQTAELSVMHPAMYAADHASTP----VENSPLTERECEILNELRCGATN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA  L IS NTV  ++ ++ RK + K R+ A+++A  +
Sbjct: 175 LDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 214


>gi|284050625|ref|ZP_06380835.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
 gi|291567571|dbj|BAI89843.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 208

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 8/161 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L R   ++   +   +L     +         E +   +   + YC     V  + + + 
Sbjct: 56  LPRLDGIAATKQIKEILPEIRVVMLTSHTAETEVLASLSSGADAYCVKGASVDSLIVAIQ 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +     +          +A       K           L+ RE+E L  + EGK++ E
Sbjct: 116 AAYEGATYLDP-------QVARVVMEHLKPPTPQTNLGT-LSPRELEVLKLMVEGKSNPE 167

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S NT+  ++  IM K A   R      A+R+ +V
Sbjct: 168 IAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGLV 208


>gi|134103124|ref|YP_001108785.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003933|ref|ZP_06561906.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915747|emb|CAM05860.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 223

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +     +         G +
Sbjct: 86  VFLALSVSDAAEDVIAVIRGGARGYVTKTISGRELADAVCRVAAGDPVFSP---RLAGFV 142

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               A    S  V   +   LT RE + L  ++ G    EIA  L IS  TV  +++S++
Sbjct: 143 LDAFAEGPNSAPVGDPELDLLTPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVL 202

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RKT    R     +A    +V
Sbjct: 203 RKTQLSNRYELSRWATDRRLV 223


>gi|228995222|ref|ZP_04154940.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
 gi|228764519|gb|EEM13350.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
          Length = 570

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 9/144 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEI 162
             L   +F              + Y   + D   +   + L++  G +I  D   R+WE 
Sbjct: 432 RVLILSMFQDTERAKEIIRNGADGYLLKSIDSRELAESIRLVYRGGTMINHDLFHRMWEE 491

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                   +         GK+F LT RE+E L  +S+G     IA  L +S  TV NY +
Sbjct: 492 NEETGLVESK------SDGKEFGLTKRELEVLNLLSQGSRYKTIASKLYLSNGTVRNYAS 545

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++  K   K R  A+  A    ++
Sbjct: 546 NLYEKLGVKNREEAVQKAKDTGLL 569


>gi|220908626|ref|YP_002483937.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219865237|gb|ACL45576.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 211

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 28/184 (15%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + VR  +        ++   +P   V  +   +  +Y N               +     
Sbjct: 53  MDVRMPVMDGVAATRLICQQFPAVKVLMLTTFDDHEYVN-------------QAMRAGAV 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                D     L   +  ++ G   L P             GLL   Q            
Sbjct: 100 GYLLKDTPPEELVQAIQSVQRGYTQLGP-------------GLLQKLQLETPAPTITPPP 146

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI--AY 239
              ELT RE+E L  I+ G ++ EIA  L IS  TV N++ +I+ +   + R+ A    +
Sbjct: 147 GWAELTERELEILDLIATGASNREIAQTLYISEKTVKNHVTNILSRLQLRDRTQAAILVH 206

Query: 240 AVRN 243
           ++R+
Sbjct: 207 SLRH 210


>gi|167583991|ref|ZP_02376379.1| Autoinducer-binding domain protein [Burkholderia ubonensis Bu]
          Length = 275

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 14/170 (8%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDNRY 130
            S++P             +   +++R      P+        + P         G+ + +
Sbjct: 93  ISNFPAAWREWERTRSTLECNPIIRRCRASVRPLVWDDASFDSAPLFRTALGRAGVRSGW 152

Query: 131 CSLTFDVAR--IRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             L  D       + L    P            RL  +  +  Y  +         G + 
Sbjct: 153 SQLVRDSRGSWGVLTLGRTAPHPASCRPYDVEPRLVWLAQMFHYHLSRMCRTGPVGGNEI 212

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            LT  E   L W  +GKTS E+A IL +S  TVN ++ +I+ K  T  ++
Sbjct: 213 HLTEMEKTILRWTVDGKTSGELATILEVSVRTVNFHVQNILMKMNTCNKT 262


>gi|152965166|ref|YP_001360950.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151359683|gb|ABS02686.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D     L   V  +  G  LL P              L+  + + 
Sbjct: 97  VFSALQAGASGFLLKDATPEVLVDSVRAVARGDSLLAPGITR---------RLIEHFVST 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++ DV      +LT RE E L  I+ G ++ EIA  L I+  T   +++ ++ K   +
Sbjct: 148 RRRAVDVPAAL-ADLTPREREVLVCIARGLSNQEIAAELFIAEQTTKTHVSRVLTKLGLR 206

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+       +V
Sbjct: 207 DRVQAVVLGYEIGLV 221


>gi|322513935|ref|ZP_08067011.1| nitrate/nitrite response regulator protein NarL [Actinobacillus
           ureae ATCC 25976]
 gi|322120230|gb|EFX92185.1| nitrate/nitrite response regulator protein NarL [Actinobacillus
           ureae ATCC 25976]
          Length = 209

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +     D    VL    E    +F  +   +      D+    L  ++ +   G 
Sbjct: 67  DTLRSLRTHGVDSRIIVLTVSDEQ-SDIFALMDAGVDGYLLKDSDTADLVENIRKAAKGE 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           M+L    +  L DR  E   L+                   LT RE + L WI+ G ++ 
Sbjct: 126 MVLSETVQQHLLDRRPENDPLSV------------------LTDRERDVLQWIATGMSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +IA  L IS  TV  +I +++RK    +R  A    +  
Sbjct: 168 QIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQ 206


>gi|256380225|ref|YP_003103885.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924528|gb|ACU40039.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 215

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 2/160 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR   +   +    +   P  +       L + +            L    AR  +  + 
Sbjct: 55  VRMPGVDGIEATGMLADDPARVLVLTTFDLDDYVYEALRAGASGFLLKHAPARELLDAVR 114

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +  +G  +L   +     L         +  V       LTGRE E L  ++ G ++ E+
Sbjct: 115 VVARGDALLAPSI--TKRLIEDFVRARPARAVRPPALTALTGRETEVLLMVARGLSNAEV 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L ++  TV  +++ ++ K   + R+ A+  A  + +V
Sbjct: 173 ARGLNVAEQTVKTHVSRVLTKLGLRDRAQAVIAAYESGLV 212


>gi|258651012|ref|YP_003200168.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554237|gb|ACV77179.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 222

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA       +  V   K  +LT RE E L  +S G ++ +I   L IS  TV  ++ +I+
Sbjct: 144 AAAMVRGLHAGPVDADK--KLTSREQEVLELLSRGMSNVQIGKKLFISDTTVKFHVGNIL 201

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R+ A+  A +  ++
Sbjct: 202 RKLGVSRRAEAVHLAGKMGLI 222


>gi|229821508|ref|YP_002883034.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567421|gb|ACQ81272.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 225

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 6/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTE----LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           V    +   +    ++  P      L    F+         A   + +   T    ++  
Sbjct: 61  VEMPGMDGIEATRRIVADPRSHARVLVLTTFNRDDYLHAALAAGASGFLLKTSRPDQLAA 120

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     ++  +      ++    A               LT RE+  L  ++ G  
Sbjct: 121 AVRSVAAGDALLSPEVTR--AVIERAVAREAGPPPAPSPAAQALTERELVVLRLLARGLN 178

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +DEIA  L + R TV  ++++++ K   + R  A+AYA R+ +
Sbjct: 179 NDEIAAELVVGRATVKTHVSNVLAKLQLRDRVQAVAYAYRHGL 221


>gi|222106283|ref|YP_002547074.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737462|gb|ACM38358.1| two component response regulator [Agrobacterium vitis S4]
          Length = 220

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ R+++ L  ++EG+T+ EIA+ILGIS  TV  ++++I R     TR+GA+   +   +
Sbjct: 146 LSQRQLDVLHLLAEGRTNKEIAIILGISPFTVRIHVSAIFRALGVATRAGAVTKGIAMGL 205

Query: 246 V 246
           V
Sbjct: 206 V 206


>gi|15595730|ref|NP_249224.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107099520|ref|ZP_01363438.1| hypothetical protein PaerPA_01000532 [Pseudomonas aeruginosa PACS2]
 gi|218889274|ref|YP_002438138.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|296387037|ref|ZP_06876536.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313111834|ref|ZP_07797627.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
 gi|9946400|gb|AAG03922.1|AE004490_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218769497|emb|CAW25257.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310884129|gb|EFQ42723.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
          Length = 496

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189
                D++  R   M L      +++D  W    L    AN+ ++     G +  +LT R
Sbjct: 370 LVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAELADLTAR 429

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E E    I +G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 EREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484


>gi|284991375|ref|YP_003409929.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064620|gb|ADB75558.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 219

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 46/88 (52%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           ++   L    + ++ ++       +  LT RE E +  I+EG +S EIA +L IS  TV 
Sbjct: 130 IYPDALTTLMREHLHRAGRGEPVPERVLTAREAEVVKLIAEGCSSREIAALLVISTKTVE 189

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + A+I++K   + R+    YA+R  ++
Sbjct: 190 RHRANILQKLDMRDRTQLTRYAIRTGLL 217


>gi|218898278|ref|YP_002446689.1| Two-component protein Kinase [Bacillus cereus G9842]
 gi|218542184|gb|ACK94578.1| Two-component protein Kinase [Bacillus cereus G9842]
          Length = 595

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 350 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 409

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       + +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 410 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 466

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 467 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 522

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 523 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 582

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 583 EAVQKALEIGII 594


>gi|108798029|ref|YP_638226.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119867124|ref|YP_937076.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|126433690|ref|YP_001069381.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|108768448|gb|ABG07170.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119693213|gb|ABL90286.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
 gi|126233490|gb|ABN96890.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 219

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 12/173 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCS 132
            IV  D     VR    S  D    +  R  +    +     +       +    + Y  
Sbjct: 54  DIVLCD-----VRMQGASGLDLCLELRGRDPDQKVVMLSVYDDEQYLFQALRVGASGYLL 108

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            +     +   L L       I       +   A   A   +  +   G    LT RE E
Sbjct: 109 KSISSDELVRQLELAHRGQTAIDPG----MAARAVDTAARLQRDEFWPGARQGLTQRESE 164

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+++  G ++  IA  L I   TV  ++ SI RK     R+GA+A A+R  I
Sbjct: 165 ILSFVVTGLSNRGIANKLVIGEETVKTHLRSIYRKLGVGDRAGAVATALREGI 217


>gi|254237247|ref|ZP_04930570.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719]
 gi|126169178|gb|EAZ54689.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719]
          Length = 496

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189
                D++  R   M L      +++D  W    L    AN+ ++     G +  +LT R
Sbjct: 370 LVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAELADLTAR 429

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E E    I +G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 EREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484


>gi|315080757|gb|EFT52733.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
          Length = 228

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 10/176 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V    P  ++  + +   D       ++  +++   +  T   +      +D      
Sbjct: 40  DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99

Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D   +  GL  +     ++  +    +   + +Q        V   K  +LT RE
Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGT-----VTGSKAEQLTARE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E    ++ G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|284045809|ref|YP_003396149.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950030|gb|ADB52774.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 381

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 36/54 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE+E L  ++EG+T+DEIA  L IS  TV  +++SI+RK     R+ A+A 
Sbjct: 315 LTRRELEVLRLVAEGRTNDEIATALVISVGTVKFHVSSILRKLRVGNRAQAVAR 368


>gi|228901714|ref|ZP_04065887.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222]
 gi|228857943|gb|EEN02430.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222]
          Length = 592

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       + +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 463

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|111020952|ref|YP_703924.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110820482|gb|ABG95766.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 207

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 10/163 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL      S  D   N+   P      V      +      +                 
Sbjct: 53  MDLRFGAGTSGVDATRNLRSLPNPPHVLVVTNYDTDADILDAVAAGA----------AGY 102

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   ++   R    G      A   K           L+ RE++ LT ++ G+++
Sbjct: 103 LLKDTPPPELLAAVRAASAGDSVLSPAVASKLMTRVRRPATSLSPREIQVLTLVAAGRSN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L +S  TV +++  I  K   K+R+ AIA A     +
Sbjct: 163 REIGKELFLSETTVKSHLVHIFGKLGVKSRTSAIARARELGTI 205


>gi|300784747|ref|YP_003765038.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794261|gb|ADJ44636.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 217

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  +       V + P  +    F              + +     
Sbjct: 50  DVVLMDVRMPAVDGIR-ATTHLMSTVDEPPKVIVVTTFENDDYVYDALVAGASGFLLKRA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               I   +  +     ++    +     LAA  A       +       LT RE + L 
Sbjct: 109 RPEEIVAAIRTVVAGESLLFPAAIRR---LAAQHAPAPAGDGLASA---GLTERERDVLR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 163 LVAAGLSNVEIASELYVGVQTVKTHVGNVLAKLGARDRTQAVIRAYDSGFV 213


>gi|291299253|ref|YP_003510531.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568473|gb|ADD41438.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 228

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 3/175 (1%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           + L  +V  D     +  +  + +      L     L    F       +      + + 
Sbjct: 48  RLLPDVVLMDVRMPDMNGIEATRRICGDPALSGVRVLMLTTFDLDEYVYSSLRAGASGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                  ++   + ++     ++         L+A + A   +S  V       +T RE 
Sbjct: 108 LKDVPPTQLLHAIRVVANGESLLAPSVTRR--LVAEFVARPHEST-VASTDLAAVTERER 164

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E LT ++ G ++ EIA  L +S  TV  +I  ++RK   + R+  +  A  + +V
Sbjct: 165 EVLTLVARGLSNTEIAERLHLSLATVKTHIGHLLRKLTARDRAQLVIAAYESGLV 219


>gi|217974227|ref|YP_002358978.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217499362|gb|ACK47555.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 216

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 87/222 (39%), Gaps = 13/222 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D+   +I +       +    +   +  S  + V W     Q   S ++++    L+  +
Sbjct: 2   DMQNNIISVGLVEDQQLVRQGIASLLAISDNIRVVWQAEDGQDALSQLANNPVDVLLSDI 61

Query: 91  ALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPA----GMDNRYCSLTFDVARIRIGL 144
            +   D    +  +++       +  T  ++            N +      + ++   +
Sbjct: 62  RMPNLDGIAMLKQIRQSANSLPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLHAI 121

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G +I    L ++            + +V   ++  L+ RE E L++++ G ++ 
Sbjct: 122 ETVAKGGYLIEPSVLKQMS-------EPKPAPNVGVTRNELLSEREREILSFMAGGFSNK 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  + ++  TV N++++I+ K   + R+ A+   ++  ++
Sbjct: 175 EIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLALI 216


>gi|94985726|ref|YP_605090.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94556007|gb|ABF45921.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 194

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 165 LAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LA    ++    DV      +   LT RE E L  +++G ++ EIA  LG+S +TV +++
Sbjct: 109 LARQLRDIVAHPDVDRLPQVDVPRLTPRESEVLPLLAQGYSNKEIAKNLGVSPDTVKDHL 168

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           A +  K     R+ A++ A    ++
Sbjct: 169 ARLYAKLDAGDRTEAVSRARSIGLL 193


>gi|56751843|ref|YP_172544.1| transcriptional regulator [Synechococcus elongatus PCC 6301]
 gi|81301073|ref|YP_401281.1| LuxR family transcriptional regulator [Synechococcus elongatus PCC
           7942]
 gi|56686802|dbj|BAD80024.1| transcriptional regulator [Synechococcus elongatus PCC 6301]
 gi|81169954|gb|ABB58294.1| transcriptional regulator, LuxR family [Synechococcus elongatus PCC
           7942]
          Length = 91

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 38/59 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   + +A++  
Sbjct: 13  LSERELQIVDLVAAGLTNQEIATRLDISKRTVDNHISNILTKTGTDNRVALVRWALQWG 71


>gi|331699969|ref|YP_004336208.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954658|gb|AEA28355.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 542

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G+++ EIA  L I+  TV  +++++  K    +R+ A A+A  + +
Sbjct: 482 LSPRELEVLRLVAAGRSNAEIAAELVIAEKTVARHLSNMFVKLDVGSRTAAAAFAFEHRL 541

Query: 246 V 246
           +
Sbjct: 542 L 542


>gi|320105355|ref|YP_004180945.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319923876|gb|ADV80951.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 217

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  +++G+++ +IA  L IS +TV  ++ SIM K     R+ A+  A++  
Sbjct: 154 DLSPRETEVLRSVAQGRSNRQIADALLISEDTVKGHMKSIMAKLDAGDRTQAVIIAMKRG 213

Query: 245 IV 246
            +
Sbjct: 214 FL 215


>gi|298292393|ref|YP_003694332.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928904|gb|ADH89713.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 310

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 20/134 (14%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
            V +             P+ I  P     R   L++        L+L   +   +  +++
Sbjct: 183 PVRRWLEGRKGEAAAAEPDAIDLPVEGSARRLRLSYVGQIGPEELLLRIVEDDRLPPEQV 242

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               L                     LT RE E L W++ GK + +I  ILG+S  TVN 
Sbjct: 243 LRAKL--------------------NLTVREAEVLMWLARGKANRDIGEILGLSPRTVNK 282

Query: 220 YIASIMRKTATKTR 233
           ++  I  K   + R
Sbjct: 283 HLEQIYAKIGVENR 296


>gi|126650999|ref|ZP_01723210.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905]
 gi|126592200|gb|EAZ86249.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905]
          Length = 377

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K   V    +  LT RE   L  ++EG  + +I  +L +S +TV +Y++S+M K   K R
Sbjct: 304 KGEKVEKNTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNR 363

Query: 234 SGAIAYAVRNNIV 246
           +  +A A R  ++
Sbjct: 364 TQVVASAFRLGLL 376


>gi|328885811|emb|CCA59050.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 260

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 11/166 (6%)

Query: 87  VRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLTFDVARI 140
           V  +++      +    L R       +  T+ +N            + Y   +     +
Sbjct: 98  VLDISMPRMTGLQAARELSRLKPELRILILTMYDNEQYFFEALKAGASGYVLKSVADRDL 157

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                        I      E  L+  Y     +   +    D  +T RE E L  ++EG
Sbjct: 158 VEACRAAVRDEPFIYPGA--ETALIRTYLDRAEQGRPL---PDKAVTEREEEILKLVAEG 212

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S EI  +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 213 HSSKEIGDLLVISPKTVERHRANLLQKLGMRDRLELTRYAIRVGLI 258


>gi|302869871|ref|YP_003838508.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|315501333|ref|YP_004080220.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302572730|gb|ADL48932.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|315407952|gb|ADU06069.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 272

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE++ L  ++EGK++ EI   L +S +TV  +   + RK   + R+ A+A   R 
Sbjct: 209 IGLTERELQVLLGMAEGKSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRA 268

Query: 244 NIV 246
            +V
Sbjct: 269 GLV 271


>gi|302545305|ref|ZP_07297647.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462923|gb|EFL26016.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 209

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 14/162 (8%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGL 144
           +R   +   +    +L++       +  T  ++      ++       L     +  IG 
Sbjct: 59  LRMGGMDGVEATTQILRKAPACKVVIVTTYEDDSDILRAVEAGAAGYLLKGSSRQELIGA 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +    +G  +L   L              K       +   L+GRE E L  + +G T+ 
Sbjct: 119 VQTAARGETVLTPSL------------AGKLLRTRVAEPSPLSGRECEVLRLVGQGLTNA 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   L ++  TV  ++    +K     R+ A+  A+   ++
Sbjct: 167 EIGAKLFVAEATVKTHLLRSFKKLGVSDRTAAVMTAMERGLL 208


>gi|157412510|ref|YP_001483376.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9215]
 gi|254526652|ref|ZP_05138704.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9202]
 gi|157387085|gb|ABV49790.1| Regulatory protein, LuxR family [Prochlorococcus marinus str. MIT
           9215]
 gi|221538076|gb|EEE40529.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9202]
          Length = 92

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 41/63 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+ N
Sbjct: 14  MGLSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73

Query: 244 NIV 246
             +
Sbjct: 74  GKI 76


>gi|170783491|ref|YP_001741984.1| putative DNA binding response regulator [Arthrobacter sp. AK-1]
 gi|150034978|gb|ABR66989.1| putative DNA binding response regulator [Arthrobacter sp. AK-1]
          Length = 212

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF                +  +T  V +I  G  ++ P  + +L   L            
Sbjct: 92  VFRAFTHGARGFLEKAASFSEITDAVLQIGAGGTIIAPFAQDVLARELR----------- 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   L+ RE+E L   ++G +  +IA  L IS  TV  ++  I  K    
Sbjct: 141 ----TRQDTAERPVLSPREIEILRLAADGYSGQKIASELHISLATVKTHLQHIYDKLDVS 196

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+A A+R   +
Sbjct: 197 DRASAVAQAIRRGFL 211


>gi|71492988|gb|AAZ32754.1| MrtR [Mesorhizobium tianshanense]
          Length = 272

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 81/231 (35%), Gaps = 21/231 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
               I     V     +  L    G     + L +      +     V + +P   V   
Sbjct: 44  AFEQIKAAANVDAA--IRILQAEYGLDFVTYHLAQTIAA--KIDSPFVRTTYPDAWVSRY 99

Query: 91  ALSEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVARIR 141
            L+   K   ++++  E   P         PE           G+     S+       R
Sbjct: 100 LLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 159

Query: 142 IGLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195
             L+ L  +        L        +  A+  +    Y++H   D    L+ RE+ECL 
Sbjct: 160 RALLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLH 219

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 220 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 270


>gi|45658914|ref|YP_003000.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45602159|gb|AAS71637.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 223

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L   I      D+    L   +  +  G   L P               L+ +  +
Sbjct: 94  VQKLLELGINGYVLKDDAGNDLLRAIEAVHKGETYLSPGI---------TTHFLSGFVGS 144

Query: 172 MFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                D    K     L+ RE E L  ++EG +++ I  IL IS  TV  + A+IM+K  
Sbjct: 145 GKPGEDNQDAKKAFSVLSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLD 204

Query: 230 TKTRSGAIAYAVRNNIV 246
               +  + YA+R  ++
Sbjct: 205 LHKVADLVMYAIRAGLI 221


>gi|58616457|ref|YP_195586.1| hypothetical protein p2A60 [Azoarcus sp. EbN1]
 gi|56315919|emb|CAI10562.1| hypothetical protein p2A60 [Aromatoleum aromaticum EbN1]
          Length = 432

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 14/203 (6%)

Query: 58  ASHFLLVRWDLFQEQKLDS---IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           +S FLL   +L      D+   +V       + R      +    N  +R   + C +  
Sbjct: 230 SSGFLLYAENLDDPLVADARLALVEGSVRAVIPRLQDAICEANALNRRRRVARMQCLLAQ 289

Query: 115 TLPENITPPAGMD--NRYCSLTFDVARIRIGLMLLFPKGRII--LRDRL--WEIGLLAAY 168
                   P  ++   R          +R+     +    ++  L DR      G L   
Sbjct: 290 AFDVARRRPQALETLERALLQAEPGGMLRVFADEPWHLHDLLQALADRKCAVSPGYLQNL 349

Query: 169 QANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +A   ++  V      +     L+ +E + L  ++EG ++ E+A  L ++ NTV  ++  
Sbjct: 350 RAAATRTEPVAPKGPLQDEAMRLSPKEGQILRRLAEGHSNKELARKLFVTENTVETHLRR 409

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K   ++R+ A+A A+   ++
Sbjct: 410 IYGKLGIRSRTQAVARALELGLI 432


>gi|290511352|ref|ZP_06550721.1| LuxR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289776345|gb|EFD84344.1| LuxR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 217

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 146 LLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+     ++  ++  E+ ++  A Y A+   +      ++  LT RE E L  +  G T+
Sbjct: 119 LIEGVKAVLNGEQTAELSVMHPAMYAADHASAP----VENSPLTERECEILNELRCGATN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA  L IS NTV  ++ ++ RK + K R+ A+++A  +
Sbjct: 175 LDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 214


>gi|256786843|ref|ZP_05525274.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289770738|ref|ZP_06530116.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700937|gb|EFD68366.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 248

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  +  G ++ E A  L IS  TV  ++   M K    +R+ A+  A    +
Sbjct: 180 LTGREAEVLRLVGRGLSNAEAADRLFISEATVKTHLNRTMSKLGLTSRAQAVVVAYETGL 239

Query: 246 V 246
           V
Sbjct: 240 V 240


>gi|66044246|ref|YP_234087.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63254953|gb|AAY36049.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 920

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDF 184
           SL        +    L  +    L ++L ++        LL    A    S +   G D 
Sbjct: 799 SLPAASGGALMPFNALLGEHPEWLHEQLVQLPPCRVQAALLEKLPACCTPSPEAAHGGDC 858

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    
Sbjct: 859 -LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLG 917

Query: 245 IV 246
           ++
Sbjct: 918 LL 919


>gi|317124103|ref|YP_004098215.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588191|gb|ADU47488.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 238

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 6/164 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           VR   +   +   +V  RP      +F    ++      ++   + +   T     IR G
Sbjct: 77  VRMARIGGLEAIRSVKARPQAPKILMFTVWDQDDVAERAIEAGADGFLLKTASPEEIRSG 136

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +      +         L    + +   +  +   +    LT RE + L  ++ G +
Sbjct: 137 IRNVAAGLGAVSPKT--AAQLFTRLRDDAGSAQRLDAARLVGTLTERERDVLAGLARGLS 194

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + E+A  L +S  TV  ++ S   K     R+ A   A R  ++
Sbjct: 195 NAELARELFVSETTVKTHLGSAFAKLGVDNRAQAAVLADRAGLL 238


>gi|297159346|gb|ADI09058.1| putative two component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 233

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 50/168 (29%), Gaps = 10/168 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + +   D      +   +   P       F       +        +         +  
Sbjct: 55  DVRMPRLDGVEATRRICAQEGAPKVLILTTFDLDEYAFSALKAGAGGFMLKDVPPGELLA 114

Query: 143 GLMLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +  +     ++        L     +    A           +   LT RE E +  ++
Sbjct: 115 AIRAVHSGDAVVAPSTTRRLLDRFAPMLPGAAGGTGPGGSARPELERLTDREREVMLLVA 174

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++ EIA  L +S  TV  ++  I+ K   + R   +  A  + +V
Sbjct: 175 QGLSNGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYESGLV 222


>gi|66045180|ref|YP_235021.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255887|gb|AAY36983.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
          Length = 222

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP----AGMDNRYCSLTFDVARIRIGL 144
            M +        +LQ+       V  T+ ++        +     Y         +  GL
Sbjct: 59  RMPVLNGLGAARILQQRMPGLKVVIFTMDDSTDHLEAAMSAGAVGYLLKDASRDEVIDGL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         + A     M +           LT RE + L  ++ G ++ 
Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|94972309|ref|YP_594349.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554360|gb|ABF44275.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 209

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ L  I++G  + EIA  L IS +TV  ++  I+ K     R+ A   A+R  
Sbjct: 148 PLTPRELDVLRLIADGLANKEIAAALEISVSTVKLHVQEILVKLQAADRTQAAVKALRAG 207

Query: 245 IV 246
           ++
Sbjct: 208 LL 209


>gi|228940289|ref|ZP_04102860.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973205|ref|ZP_04133794.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982224|ref|ZP_04142510.1| Two-component protein Kinase [Bacillus thuringiensis Bt407]
 gi|228777511|gb|EEM25792.1| Two-component protein Kinase [Bacillus thuringiensis Bt407]
 gi|228786401|gb|EEM34391.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819415|gb|EEM65469.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 592

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       + +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 463

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|126661124|ref|ZP_01732204.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
 gi|126617600|gb|EAZ88389.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
          Length = 219

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 81/200 (40%), Gaps = 19/200 (9%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110
           +Y+    + +   +  +E     I++ + P  ++  + + E D Y     V Q     + 
Sbjct: 30  DYLEFQGYDVTTAENGKEAL--EILTKEIPDMIICDVMMPEMDGYSLIEKVRQDARTSWV 87

Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           PV     +      +       + Y    F+   +   +     +   +    +   G +
Sbjct: 88  PVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLKQASRL----MRHKGNI 143

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +   +N  +        + ELT  E + +  +++G ++ ++A  L +S+ T+ +++++++
Sbjct: 144 SLDDSNRIQVPS-----NVELTPTETKVVQLVAQGLSNRDVAEKLSVSQRTIESHVSNML 198

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            KT    R+    +A+ N+I
Sbjct: 199 NKTNLHNRTELARWAIENSI 218


>gi|326940929|gb|AEA16825.1| two-component protein kinase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 595

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 350 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 409

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       + +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 410 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 466

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 467 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 522

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 523 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 582

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 583 EAVQKALEIGII 594


>gi|325001951|ref|ZP_08123063.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 223

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 13/153 (8%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-------- 157
            +    +    P++          +  +   V    +G ++       +L          
Sbjct: 69  VQAIAEIAERSPDSRVLVLSASGEHADVLEAVKAGALGYLVKSAGVDELLEAIRRTARGV 128

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTSDEIAVILGI 212
            ++  GL         +  +     D       LT RE E L  +++G T+ +IA  L +
Sbjct: 129 AVFTPGLAGLVLGEYRRLAETPKPADGSPAVPALTERETEVLRLVAKGMTARQIAAKLVV 188

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV +++ + +RK     RS  + YA+   +
Sbjct: 189 SHRTVESHVQNTLRKLQLHNRSQLVRYAIEQGL 221


>gi|317154890|ref|YP_004122938.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316945141|gb|ADU64192.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 220

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG T+ E+A  L IS  TV N+  ++M+K    +    I YA R  +
Sbjct: 153 LTAREQEVLRMLAEGMTAREVAAKLFISPKTVENHRTNLMKKLGLHSTVELIRYAARLGL 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|71279999|ref|YP_268149.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71145739|gb|AAZ26212.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 215

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 44/77 (57%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A +     V+  +  +LT RE   L+++++GKTS EIA IL IS  TV  +  ++  K  
Sbjct: 137 AKLLIDNPVNTNESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRNMKTKLG 196

Query: 230 TKTRSGAIAYAVRNNIV 246
             + +  I+YAV++ I+
Sbjct: 197 IHSLAKLISYAVKHGII 213


>gi|83310970|ref|YP_421234.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945811|dbj|BAE50675.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 213

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 16/179 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMD 127
           E++   +V  D+         ++  +     +         +   + ++       A   
Sbjct: 43  ERESVDLVMLDYSMP-----GMNGVEGIPTAIAAARGTPVAIMSGVADDDAVRACIAAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T +       + L+   G  +  +      L +   A    + D         T
Sbjct: 98  RGFLPKTLESRVFIQAVGLVGAGGTYVPAEF---AALPSKPAAPATPTLDPSL-----FT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I  G ++ EIA  L +   T+  ++  I +K   K RS A   AVR  +V
Sbjct: 150 SREMEVLALIVAGASNKEIARQLDLQEVTIKLHLTRIFQKLGVKNRSHAAVTAVRGGLV 208


>gi|312196401|ref|YP_004016462.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227737|gb|ADP80592.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 251

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R + R        +AA  A+  ++ D        LT RE E L  ++ G+T+ EI
Sbjct: 151 LAEAVRAVARGETVLAPPVAARLASRLRAPD-----PVTLTRRETEVLAAVARGRTNAEI 205

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L I   TV  ++  +  K     R+ A+  A+   ++
Sbjct: 206 GRELFIGEATVKTHLLRVFAKLQVDDRTHAVTAALERGLL 245


>gi|300087810|ref|YP_003758332.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527543|gb|ADJ26011.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 228

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 8/169 (4%)

Query: 83  PFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPEN----ITPPAGMDNRYCSLTFD 136
           P  +V  +A+   +       +++       +  T  ++    +         Y      
Sbjct: 53  PDVIVMDIAMPNMNGIEATREIKKFLPTTAILILTAYDSDQYIMALIEAGAAGYMLKNVR 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195
             ++   +  +   G  IL+       +    + N  K  D         LT RE+E L 
Sbjct: 113 GNQLIDAIRAV-HSGESILQPSTTRRVINQLSKNNPIKREDTESDAPAHALTEREMEVLR 171

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             ++G ++ + A  L +S  TV  ++++I +K    +R+ AI Y ++  
Sbjct: 172 LAAKGVSNRDTAEQLYLSSRTVQTHLSNIFKKLNVASRTEAILYGLKRG 220


>gi|294053956|ref|YP_003547614.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613289|gb|ADE53444.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 218

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 46/135 (34%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +    P        + +    +   V     G +         + + + E+     Y  +
Sbjct: 78  IVSEFPNAKVILLSVFDSEEDIWNAVQAGVKGYLTKKAGEIEDVMEAIHEVARGGTYFPS 137

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE+E L  ++ G ++ EI   L +S   V  +I ++  K    
Sbjct: 138 GLAQKLERRRSQKGLTDREMEVLKLLASGLSNKEIGSELDLSVAMVKLHIINLREKLDAV 197

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A +  I+
Sbjct: 198 DRTQAVVQAFKRGIL 212


>gi|289668073|ref|ZP_06489148.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 230

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 154 ILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVIL 210
           +   +L    LLA A+QA   +  D    +     LT RE ECL + ++G TS  IA  L
Sbjct: 133 LAEAQLLPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKNIAAAL 192

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             S  TVN ++ S  RK   + R  A+   +   ++
Sbjct: 193 NRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 228


>gi|254511024|ref|ZP_05123091.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
 gi|221534735|gb|EEE37723.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
          Length = 233

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           + ++ + + ++  LA +  +   + D          L+ RE+E L W + GK+  +I  I
Sbjct: 134 KKLVPNVIKDLQSLAVHIHDNVMTSDTISRMLYHPTLSSRELEILQWAAAGKSQQDIGDI 193

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  ++ S   K    T   A+  A+   ++
Sbjct: 194 LSISHRTVEVHLRSSREKLNALTTPQAVGRAIGIGLI 230


>gi|229110649|ref|ZP_04240214.1| Two-component protein Kinase [Bacillus cereus Rock1-15]
 gi|229128492|ref|ZP_04257471.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4]
 gi|228654995|gb|EEL10854.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4]
 gi|228672822|gb|EEL28101.1| Two-component protein Kinase [Bacillus cereus Rock1-15]
          Length = 592

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       + +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 463

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDAQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|21222068|ref|NP_627847.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|4753877|emb|CAB42040.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
          Length = 248

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  +  G ++ E A  L IS  TV  ++   M K    +R+ A+  A    +
Sbjct: 180 LTGREAEVLQLVGRGLSNAEAADRLFISEATVKTHLNRTMTKLGLTSRAQAVVVAYETGL 239

Query: 246 V 246
           V
Sbjct: 240 V 240


>gi|83941288|ref|ZP_00953750.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36]
 gi|83847108|gb|EAP84983.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36]
          Length = 244

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDF 184
            D   C +    AR  +  +             + ++ + + +    F          + 
Sbjct: 115 ADGLVCQVFGPQARNALVSIGFHHDRPRPSDAEVLDLHVASQFAHMRFCALVAGPAAPNR 174

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L WI+ GK++  IA I+G+SR+TV+  +  +  K     R+ A    V   
Sbjct: 175 RLSPRELELLRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGVAFG 234

Query: 245 IV 246
           ++
Sbjct: 235 LI 236


>gi|323699571|ref|ZP_08111483.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. ND132]
 gi|323459503|gb|EGB15368.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans ND132]
          Length = 226

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D        + +  + K    L R   +   +       +         Y     
Sbjct: 53  DIVLVDISMPDKSGIQMIRELKDELPLTR--FVIISMHSEADYIVEAFRAGATGYIIKES 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              ++  GL  +     + L   L +  +    Q    ++          LT RE E + 
Sbjct: 111 AAGQLLKGLNTVAGGN-LFLDSALSQEVVFKLLQTKTGEADGQD-DPYATLTPREQEVMR 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG T+  +A  L IS  TV N+  ++M+K   K+    + YA R  ++
Sbjct: 169 MLAEGLTAKAVAEQLFISPKTVENHRTNLMKKLGLKSSVELVRYAARLGLI 219


>gi|298249444|ref|ZP_06973248.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547448|gb|EFH81315.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 236

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 14/172 (8%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143
           VR   +        +L++  +    +  T  ++      +      Y      VA +   
Sbjct: 67  VRMPVIDGVTATAQILKQLPDCCILMLTTFDDDAYVRDALRTGARGYLLKDMPVADLAKA 126

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---------DFELTGREVECL 194
           +         +    +  I  +A   A +  + +              +  LT RE E L
Sbjct: 127 IFAASRGVYQLDAAVIERI--VAPVGATIKPTTEQPLAPSPTRTGSVTEARLTRREQEIL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G T+ E+A  L IS  TV N++A++  +   + R+ A+ Y     ++
Sbjct: 185 RLVATGATNREVAERLVISEGTVKNHLANLFSRLGLRDRTQAVLYTREQGLL 236


>gi|258510399|ref|YP_003183833.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477125|gb|ACV57444.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 224

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +++G T+ E+A  L IS  TV  +   IMR+    +R+  + YA +N +
Sbjct: 150 LSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQHIMRRIGLHSRAALVRYAYQNGL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|218246417|ref|YP_002371788.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 216

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 83/199 (41%), Gaps = 19/199 (9%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110
           +Y+    + +   +  +E     I+++  P  ++  + + E D Y     V Q     + 
Sbjct: 27  DYLEFQGYEVTTAENGREAL--EILANQVPDMIICDVMMPEMDGYAFVEKVRQDRRLSWI 84

Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           PV     +      +       + Y    F+   +   +     + R +    +     +
Sbjct: 85  PVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELAAQVESSLSQARRL----MEHKAGI 140

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +  +A+  +        + ELT  E++ +  +++G ++ EIA  L +S+ T+ +++++++
Sbjct: 141 SLDEAHKIQVPS-----NVELTPTELKVIQLVAQGLSNREIASKLNVSQRTIESHVSNML 195

Query: 226 RKTATKTRSGAIAYAVRNN 244
            KT+   R+    +A+ +N
Sbjct: 196 NKTSLHNRTELARWAMESN 214


>gi|33860714|ref|NP_892275.1| LuxR family regulatory protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633656|emb|CAE18613.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 92

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 41/63 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+ +
Sbjct: 14  MGLSSREMEIINLVADGLTNQEIAVRLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDH 73

Query: 244 NIV 246
             +
Sbjct: 74  GKI 76


>gi|325676301|ref|ZP_08155980.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325552862|gb|EGD22545.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 208

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              EL+GREVE L  +++G ++  IA  L +S  TV +++     K    +R+ A+A A 
Sbjct: 143 PRVELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAAR 202

Query: 242 RNNIV 246
              ++
Sbjct: 203 ERGLI 207


>gi|294630527|ref|ZP_06709087.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292833860|gb|EFF92209.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 206

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 7/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +    F          +   + +      V +I   + ++     I+    L ++  
Sbjct: 66  PKVVVITTFENDDYVTAALSAGASGFVLKRRPVRQIAEAVRIVAAGETILFPAALRQM-- 123

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                                LT RE   L  ++ G+++ EIA  L +S  TV  ++ ++
Sbjct: 124 -----VTARPLSSAEALPKAALTEREEAVLRLMATGQSNPEIARALTVSLETVKTHVGNV 178

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R+ A+  A  + +V
Sbjct: 179 LSKLGAQNRTHAVVIAYESGLV 200


>gi|225175953|ref|ZP_03729945.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168541|gb|EEG77343.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 225

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 14/136 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    T     D     L   +  +  G  +L P              + A     
Sbjct: 92  VFALLEAGATGYLLKDVNCQELIRSIYSVDKGEPVLCPS-------------VAAKVMQR 138

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             +  D       + LTGREVE LT ++ G  + EIA  L +S+ TV  ++ASI  K   
Sbjct: 139 FRRGEDSETNNAVDSLTGREVEVLTMVANGHRNQEIASRLYVSKRTVEAHLASIFSKLKV 198

Query: 231 KTRSGAIAYAVRNNIV 246
            +R+ AI +A++  ++
Sbjct: 199 GSRTEAILFALKEGMI 214


>gi|295836117|ref|ZP_06823050.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197695212|gb|EDY42145.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 259

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +           LT REVE L  I++G ++ +IA  L +S  TV  +I ++  K   + 
Sbjct: 178 LQKDGAGTVPPDGLTAREVEVLVLIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRD 237

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+ YA  + +V
Sbjct: 238 RAQAVRYAYLHGMV 251


>gi|254361295|ref|ZP_04977438.1| possible bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica PHL213]
 gi|153092791|gb|EDN73834.1| possible bifunctional amino acid-binding protein/DNA-binding
           protein [Mannheimia haemolytica PHL213]
          Length = 583

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  +Q+ +    + H    + L+ RE+E LT IS G ++++IA  L IS+ TV+ +I +I
Sbjct: 65  LERHQSFVLTQAE-HTDLPYGLSKREIELLTLISSGLSNEDIANELCISKRTVDKHIENI 123

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             KT TK+R+    +A+  +++
Sbjct: 124 FAKTHTKSRTLLAVFAITEHLI 145


>gi|312959686|ref|ZP_07774203.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas fluorescens WH6]
 gi|311286403|gb|EFQ64967.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas fluorescens WH6]
          Length = 254

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLM--LLFPKGRIILRDR---LWEIGLLAAYQANM---FKSYDVHWGKD 183
           S+   + R     +  L   K   +L+D    L E  +++           S ++     
Sbjct: 130 SVPIHLPRGGFASLTGLRTGKASSVLQDAQQTLSEFSVISHALQEAAYPLFSKELRTYPY 189

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL W +EG T+ +IA  L  S   V+ ++AS M K   K R  A+  A   
Sbjct: 190 IHLTKRERECLKWAAEGLTAAQIATQLSRSLAVVSLHLASAMHKLGAKNRVQAVVRATHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|24216568|ref|NP_714049.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24197887|gb|AAN51067.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 223

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L   I      D+    L   +  +  G   L P               L+ +  +
Sbjct: 94  VQKLLELGINGYVLKDDAGNDLLRAIEAVHKGETYLSPGI---------TTHFLSGFVGS 144

Query: 172 MFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                D    K     L+ RE E L  ++EG +++ I  IL IS  TV  + A+IM+K  
Sbjct: 145 GKPGEDNQDAKKAFSILSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLD 204

Query: 230 TKTRSGAIAYAVRNNIV 246
               +  + YA+R  ++
Sbjct: 205 LHKVADLVMYAIRAGLI 221


>gi|330887817|gb|EGH20478.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str.
           301020]
          Length = 903

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 17/178 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYC-------SLTF 135
           D ++   ++ + +   + +   E+  P+     + + I        R         SL  
Sbjct: 726 DRLQGDDVASEQRLQALERHAREVGAPLLGLIAMTQQIGLLLSQTRRDEARELLLRSLQS 785

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTG 188
                 I    L  +    L ++L ++        LL    A+   + +   G D  L+ 
Sbjct: 786 AAGGALIPFKTLLGEHSQWLHEQLLQLPSCKVREALLEELPASCTPTLEPAHGSDC-LSV 844

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    ++
Sbjct: 845 RELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGLL 902


>gi|282854131|ref|ZP_06263468.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282583584|gb|EFB88964.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|313813050|gb|EFS50764.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|314923106|gb|EFS86937.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314966874|gb|EFT10973.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981217|gb|EFT25311.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091787|gb|EFT63763.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315103290|gb|EFT75266.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327327699|gb|EGE69475.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 218

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 67/176 (38%), Gaps = 10/176 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V    P  ++  + +   D       ++  +++   +  T   +      +D      
Sbjct: 40  DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99

Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                +   +  GL  +     ++  +    +   + +Q +      V   K  +LT RE
Sbjct: 100 MLKNAEAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGST-----VTGSKAEQLTARE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E    ++ G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|145224163|ref|YP_001134841.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|315444498|ref|YP_004077377.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145216649|gb|ABP46053.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
 gi|315262801|gb|ADT99542.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 217

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII-------LRDR 158
            +    V    P +        +    +   V     G ++     + +        + R
Sbjct: 66  AQATTEVLAVSPSSRILVLSASDERDDVLEAVKAGATGYLVKSASKQELGDAVRATAQGR 125

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRN 215
                 LA      F+  +       +   LT RE E L ++++G T+ +IA  L +S  
Sbjct: 126 AVFTPGLAGLVLGEFRRIEQSSPAGADGPTLTERETEILRYVAKGLTAKQIASRLSLSHR 185

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TV N++ +  RK     R     YA+ + +
Sbjct: 186 TVENHVQATFRKLQVGNRVELARYAIEHGL 215


>gi|317125782|ref|YP_004099894.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589870|gb|ADU49167.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM
           43043]
          Length = 978

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L  R+    +L      +     VH      LT REV+ L  ++EG ++ EI   L +S 
Sbjct: 884 LARRIGHWAVL-RDLDTVPAPDAVHPPLPNGLTEREVDVLRLVAEGLSNREIGERLFLSA 942

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           NT  N++ SI+ KTA   R+ A  +A  + ++
Sbjct: 943 NTAANHVRSILGKTAAPNRTKAAIFATEHGLL 974


>gi|293491176|gb|ADE45142.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183
           ++   +                    RL E  LL       A+Q+   +  D    +   
Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHH 189

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +  
Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|302873825|ref|YP_003842458.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307689930|ref|ZP_07632376.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302576682|gb|ADL50694.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 220

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 5/153 (3%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  +     + P  +           I     +  R   L        I  +    +G +
Sbjct: 69  EAIRALKEKKNPVPIIILTTFNDENLIREGLALGARGYLLKDSTREELIRTVEAAIRGEL 128

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+  +   G++   +    +S +     +  +T RE+  L  ++ G TS EIAV +GI+
Sbjct: 129 LLQPEI--SGIIFGAKKESKESNNTF---NAGITERELFVLQAVARGCTSKEIAVDMGIA 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  ++ +I  K   ++R  A+A A+   I+
Sbjct: 184 ERTVKAHLTNIYSKLKVESRPQAVAVAIEQGII 216


>gi|218459661|ref|ZP_03499752.1| LuxR family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 65

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E + W++ GKT+ EI  ILGIS  TVN +I++   K +    +  +A A+RN I+
Sbjct: 5   TPRELEIIGWMAAGKTAAEIGAILGISPITVNTHISNAKAKLSVFKETALVAAALRNGII 64


>gi|83854765|ref|ZP_00948295.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83842608|gb|EAP81775.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 248

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDF 184
            D   C +    AR  +  +   P         + ++ + + +    F          + 
Sbjct: 119 ADGLVCQVFGPQARNALVSIGFHPDRPRPTDAEVLDLHVASQFAHMRFCALVAGPAAPNR 178

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L WI+ GK++  IA I+G+SR+TV+  +  +  K     R+ A    +   
Sbjct: 179 RLSPRELELLRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGLAFG 238

Query: 245 IV 246
           ++
Sbjct: 239 LI 240


>gi|332701939|ref|ZP_08422027.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552088|gb|EGJ49132.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 215

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF----DVARI 140
           D  +    S  D   +VL  P +    +   +P  +       +R     F     +  +
Sbjct: 53  DWQQLDGDSRWDALGDVLGDPMQTMDTILFNVPTGLDIERQALDRGVRGIFRQNQPLKLL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             G+  +        R  + E   L   Q           GK+  L+ RE E L  I++G
Sbjct: 113 MRGITAVLEGELWYSRRAISE--RLRQNQLTQASPKAASAGKEM-LSAREREVLLLIAQG 169

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++DE+   L IS +TV  ++ +I  K     R  A  +AV+N
Sbjct: 170 LSNDEVGDKLCISLSTVKKHLCNIYAKLKISNRIQAAFWAVQN 212


>gi|256395191|ref|YP_003116755.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361417|gb|ACU74914.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 217

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 7/162 (4%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++   +  ++ D    VL    E    V   +                L   V RI +G
Sbjct: 58  AEVTARLVAADPDVKVLVLSASGEQ-QDVLQAVKAGAIGYLVKSASREELLAAVERIAVG 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
             +  P    ++     ++ ++         +          LT RE E L  +++G + 
Sbjct: 117 DPVFTPGLAGLVLGEFRKLAMVPPGAGAGTAADTPR------LTDRETEVLRLVAKGLSY 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L +S  TV N++ + + K     R   + YA+   +
Sbjct: 171 KQIADRLVLSHRTVQNHVQNTLNKLQLHNRVELVRYAIAQGL 212


>gi|30021317|ref|NP_832948.1| two-component protein kinase [Bacillus cereus ATCC 14579]
 gi|218232352|ref|YP_002367934.1| Two-component protein Kinase [Bacillus cereus B4264]
 gi|29896871|gb|AAP10149.1| Two-component protein Kinase [Bacillus cereus ATCC 14579]
 gi|218160309|gb|ACK60301.1| Two-component protein Kinase [Bacillus cereus B4264]
          Length = 595

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 350 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 409

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       + +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 410 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 466

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 467 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDAQK 522

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 523 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 582

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 583 EAVQKALEIGII 594


>gi|317490641|ref|ZP_07949111.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325831510|ref|ZP_08164764.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1]
 gi|316910265|gb|EFV31904.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325486764|gb|EGC89212.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1]
          Length = 214

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F+TL          ++    L   V  +  G   + PK   +L  +L   G         
Sbjct: 92  FYTLRGGAAGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGG--------- 142

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               +       +L+ RE+E L  +++G T+ EI+  + +S  TV  + + I +K   KT
Sbjct: 143 ----EEEDRSYQQLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKT 198

Query: 233 RSGAIAYAVRNNIV 246
           R+  + YA+R+ ++
Sbjct: 199 RADLVDYALRHKLL 212


>gi|239933574|ref|ZP_04690527.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291441947|ref|ZP_06581337.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291344842|gb|EFE71798.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 231

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +   G   R   L   V  +  G  LL P             GL+  + A 
Sbjct: 93  VAEALRAGASGFLGKGARPEELLGAVRTVAAGDALLSPSATR---------GLIRRFLAQ 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   LT RE + L  ++ G +++EIA  L +S  T   ++   M K A +
Sbjct: 144 PEPCTAAVHERLECLTRRERDVLGLVALGLSNEEIAERLFVSPLTAKTHVNRAMTKLAVR 203

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A +  +V
Sbjct: 204 DRAQLVVVAYQCGVV 218


>gi|70732431|ref|YP_262193.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346730|gb|AAY94336.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           Pf-5]
          Length = 911

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-------IGLLA 166
             L      P    +   +L   V       M L       +R++L +         LL 
Sbjct: 772 ALLLAAGRGPQARQDLAQALEAGVGGAMQPFMALLHGHPGWMREQLQQGVSTALTQALLE 831

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
              A   +  ++    +  L+ RE+  L  I++G ++ EI+  L IS +TV  + + I  
Sbjct: 832 RLPAASREPQEIAAHNE-SLSSRELSVLQLIAQGCSNQEISERLFISLHTVKTHASHINS 890

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   + R+ A+A A    ++
Sbjct: 891 KLGVERRTQAVARAQELGLL 910


>gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 245

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 10/186 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +Q L  +V +D     +    L +K +    L     +F        +         + Y
Sbjct: 59  QQMLPDVVITDVMMPRLDGYGLLKKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 118

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---AYQANMFKSYDVHWGKD 183
               FD   +   +  +  + + +L++       ++G +A       ++    +    K+
Sbjct: 119 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSKE 178

Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                 T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA
Sbjct: 179 PVVHSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYA 238

Query: 241 VRNNIV 246
           + + +V
Sbjct: 239 LEHRLV 244


>gi|330981978|gb|EGH80081.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 229

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I  ++ + +  L     ++ +           LT RE+E L W  +GKT+ EI
Sbjct: 143 LGEVARPISAEQKYLMSSLMPVLHSVARGLKFCSR---GLTHRELEVLQWARDGKTAWEI 199

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++I  +S +TV  ++ +I  K     R+ A
Sbjct: 200 SMIRDVSESTVKYHLKTIYSKLGVANRAQA 229


>gi|311113859|ref|YP_003985081.1| DegU family transcriptional regulator [Rothia dentocariosa ATCC
           17931]
 gi|310945353|gb|ADP41647.1| transcriptional regulatory protein DegU [Rothia dentocariosa ATCC
           17931]
          Length = 241

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 15/193 (7%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           + +E     +V  D    ++  +  ++     NV      +    F              
Sbjct: 49  MAEEGTAPQVVLMDVRMPIMDGLEAAKSILELNVPDSRVIMLT-TFDVDEYVYAAVRAGA 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWGKDF 184
           + +         +   +  +     +I      RL E  +      +   S  V      
Sbjct: 108 SGFLLKDAPPEELLGAIRTIHRGDAVIAPSATRRLLEHMIPVLEVHSEQDSASVAPTPQE 167

Query: 185 E-----------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           E           L+ RE E L  I++G ++ EI+  L +S  T+  +++ ++ K   + R
Sbjct: 168 EPQLLHQELMQTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLSKLDARDR 227

Query: 234 SGAIAYAVRNNIV 246
             A+  A    IV
Sbjct: 228 VQAVIMAYEAGIV 240


>gi|116621985|ref|YP_824141.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225147|gb|ABJ83856.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 216

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 80/217 (36%), Gaps = 11/217 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++  D        + AL E       + V  +    ++   +  ++ P  +V  +A+  
Sbjct: 5   RILLADDHTVVRDGLRALLER---EDDMTVVGEAADGRESIRMAETESPDVVVMDLAMPN 61

Query: 95  KDK-----YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            +                +     H+    +        +   L   +    I  +    
Sbjct: 62  MNGMEATRRILASTSCAGVVILSMHSDESYVLGALKAGAKGYLLKDSMRGEVIQAIRAVS 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +GR  L  ++  I  +     +  +   +    D  L+ RE E L  I+EG+++ E+A +
Sbjct: 122 EGRSFLTKKIARI--MQEDYVSRLQQRGLEDRYDL-LSDREREVLQMIAEGRSNKEVANL 178

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  + A I++K    +    I YAVR  I+
Sbjct: 179 LNISPTTVETHRAHILQKLDIHSVPELILYAVRKGII 215


>gi|319794782|ref|YP_004156422.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597245|gb|ADU38311.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 235

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 8/137 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  L          +     L+  +  I  G   + P            +G +AA Q +
Sbjct: 104 IFAALRAGAIGYLLKERDDLELSIALRSIEQGGAPIDPSIAR------RILGWIAAQQTS 157

Query: 172 MFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           +    + D        LT RE + L  +S+G ++ ++A  L ISR TV  +  +I RK A
Sbjct: 158 LSAVLASDAPSPLPVALTPRERKILELVSQGLSNRDMAESLSISRLTVECHTKNIYRKLA 217

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R+ A+    R+ ++
Sbjct: 218 VTSRTEAVFQGRRHGLL 234


>gi|289679770|ref|ZP_06500660.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
          Length = 188

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144
            M +        +LQ+       V  T+ ++        +     Y         +  GL
Sbjct: 25  RMPVLNGLGAARILQQRMPGLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIDGL 84

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         + A     M +           LT RE + L  ++ G ++ 
Sbjct: 85  QRVARGEEALNS------AVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNR 138

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 139 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 180


>gi|262042600|ref|ZP_06015756.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329998588|ref|ZP_08303172.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
 gi|259040034|gb|EEW41149.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328538607|gb|EGF64707.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
          Length = 182

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 146 LLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+     ++  ++  E+ ++  A Y A+   +      ++  LT RE E L  +  G T+
Sbjct: 84  LIEGVKAVLNGEQTAELSVMHPAMYAADHASTP----VENSPLTERECEILNELRCGATN 139

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA  L IS NTV  ++ ++ RK + K R+ A+++A  +
Sbjct: 140 LDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 179


>gi|116625514|ref|YP_827670.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228676|gb|ABJ87385.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 191

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         +   +  +      +         +L  Y+ ++    D+     
Sbjct: 77  RAGARGYLLKDSGAGELVTAIRAVAGGESYLTPA--VSNAVLDDYRKHVTNPIDL----- 129

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  ++EGKT+ EIAV+L +S  TV+ +   IM K    + +  + +AVRN
Sbjct: 130 --LSSREREVLQMLAEGKTNKEIAVVLNLSVYTVDAHRGRIMEKLNLHSINELVRFAVRN 187

Query: 244 NIV 246
            +V
Sbjct: 188 GLV 190


>gi|121606230|ref|YP_983559.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120595199|gb|ABM38638.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 275

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R  L LL P    + R        +   +       D+H      LT RE E + W+
Sbjct: 159 ERDRERLELLRPHLAFLYRHARHARAAVTLEEGEAPLPPDIHAP---GLTQREAEVMHWL 215

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + GK   EIA +L IS  TV  ++  I  K   +TR+ A+  A+
Sbjct: 216 ACGKMDAEIAALLAISPRTVQKHLEHIYVKLGVETRTAAVMRAL 259


>gi|308178463|ref|YP_003917869.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307745926|emb|CBT76898.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 221

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 62/171 (36%), Gaps = 7/171 (4%)

Query: 83  PFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DV 137
           P   +  + + + D      ++   T+    V  T   +      MD           + 
Sbjct: 50  PTVALMDIQMPQMDGIEATKLIASTTQTKVIVLTTFNRDDYLFDAMDAGASGFLLKNAEP 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195
             +   +  +     ++  +   ++       A    S            LT RE + L 
Sbjct: 110 ELLATAVHQVAAGNGLLSPEVTLKLIQRNTGAAQSTPSAAATAEAQLLEALTERERQVLG 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ GK + EIA +LG+S  TV  ++++++ K   + R   + +A R  ++
Sbjct: 170 ELATGKNNQEIAAVLGLSEATVKTHLSNLLAKLHLRDRVQGVLFAHRAGLI 220


>gi|302529657|ref|ZP_07281999.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302438552|gb|EFL10368.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 276

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 4/148 (2%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
                R       V   L  +I     +  R  + T   A  R  L          + D 
Sbjct: 130 ITFGDRLLHAATAVATRLGRDIEVEEEVQRRMAAPTAVPAAERGDLHAELTAIAGSITDE 189

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                LLA     +    D+       LT RE++ L  +SEG T+DEI+  LG+  NTV 
Sbjct: 190 TARQRLLA-VCERLRPELDLPG---VALTPREIDVLRLVSEGCTNDEISDRLGLLPNTVK 245

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +Y+   MRK A   R  A+  A    ++
Sbjct: 246 SYLKHAMRKLAVSNRVQAVNRARAAGLL 273


>gi|293491178|gb|ADE45143.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183
           ++   +                    RL E  LL       A+Q+   +  D    +   
Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHH 189

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +  
Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|300791111|ref|YP_003771402.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800625|gb|ADJ51000.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 222

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D    +   LT RE + L  +++G T+ +IA  L +S  TV N++ S +RK     R 
Sbjct: 149 SEDAAGAEPPRLTERETDVLRLVAKGLTARQIAERLVLSHRTVENHVQSTLRKLQLHNRV 208

Query: 235 GAIAYAVRNNI 245
               YA+ + +
Sbjct: 209 ELARYAIEHGL 219


>gi|270490280|ref|ZP_06207354.1| transcriptional regulator, LuxR family [Yersinia pestis KIM D27]
 gi|270338784|gb|EFA49561.1| transcriptional regulator, LuxR family [Yersinia pestis KIM D27]
          Length = 104

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +   + +    K    + RE E L W S GKT  EIA+ILGI ++TV  +I +I+RK  
Sbjct: 25  HHENNTLNKKENKREIFSPRENEILYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLG 84

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI   +   ++
Sbjct: 85  VLNAKHAIRLGIELQLI 101


>gi|256389895|ref|YP_003111459.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356121|gb|ACU69618.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 234

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 3/157 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A +         + P  +    F              + +         +   + ++   
Sbjct: 75  AAAITSAIDAPRETPRIIILTTFDLDQYVYAAITAGASGFLLKDVSPEHLVAAVHMVRAG 134

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209
             ++         L+  +             KD   LT RE E L  +  G ++ E+A  
Sbjct: 135 DAMLAPAITRR--LVERFAVPTVNPRTEALHKDLATLTPREREVLGLLGRGLSNAELAAR 192

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +S  TV  ++A I+ K   + R+ A+  A    ++
Sbjct: 193 FHLSEATVKTHVARILAKLNLRDRAQAVVVAYETGLI 229


>gi|148557613|ref|YP_001265195.1| putative PAS/PAC sensor protein [Sphingomonas wittichii RW1]
 gi|148502803|gb|ABQ71057.1| putative PAS/PAC sensor protein [Sphingomonas wittichii RW1]
          Length = 222

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE ECL W+S GKT+ E A ILG+S+ TV  ++ + + +     +  A   A+R  +
Sbjct: 162 LRSRERECLVWLSLGKTAWETAAILGLSQRTVEYHLNNAVARLGAANKVHAAVIAIRAQL 221

Query: 246 V 246
           +
Sbjct: 222 I 222


>gi|319942139|ref|ZP_08016457.1| two-component system response regulator NarL [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804349|gb|EFW01233.1| two-component system response regulator NarL [Sutterella
           wadsworthensis 3_1_45B]
          Length = 226

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 14/132 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            F  +          D     + + V     G + + P               +  Y  +
Sbjct: 101 FFSCIRAGADGYFLKDMEPEKVLYCVRESLEGRLTVDP--------------AMVRYLTD 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +       +   LT RE + L+ I+ G T+  I   L IS  TV  ++  +++K    
Sbjct: 147 LLRGKAPKVEETVSLTDREEDVLSCIARGMTNKMIGRELKISDGTVKGHVKHLLKKLGFN 206

Query: 232 TRSGAIAYAVRN 243
           +R  A  +A   
Sbjct: 207 SRVEAAVWAAER 218


>gi|218675092|ref|ZP_03524761.1| LuxR family transcriptional regulator [Rhizobium etli GR56]
          Length = 81

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 40/78 (51%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             +  ++     G    +T RE E + W++ GKT+ EI  IL IS  TVN +IA+   K 
Sbjct: 3   CDDAARADHRRAGAMSAVTPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKL 62

Query: 229 ATKTRSGAIAYAVRNNIV 246
                +  +A A+RN I+
Sbjct: 63  GVFKETALVAAALRNGII 80


>gi|227834238|ref|YP_002835945.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183272|ref|ZP_06042693.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227455254|gb|ACP34007.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 212

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ EI V L +S  TV +++  I  K   ++R+ A+A A    +
Sbjct: 152 LTPRELEVLKLVAAGSSNREIGVELMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGV 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|262201684|ref|YP_003272892.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262085031|gb|ACY20999.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 231

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 2/141 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V     + I         Y + T   A +   +  +   G  +   RL    +
Sbjct: 92  PVFLALSVSDAAEDVIATIRAGARGYVTKTISGADLADAVRRVA-DGDAVFSPRLAGF-V 149

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L ++             +   LT RE+E L  ++ G T  EIA  L IS  TV  + +++
Sbjct: 150 LDSFTGKSSAPEPPLDPELDSLTRRELEVLRLLARGYTYREIAEELFISIKTVETHASNV 209

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           +RKT    R+    +A   +I
Sbjct: 210 LRKTQQSNRNALTRWAATRHI 230


>gi|159037407|ref|YP_001536660.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916242|gb|ABV97669.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 230

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 3/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F              + +         +   + ++     +I  +    +  
Sbjct: 88  PAVLILTTFDRDDYLFAALRAGASGFLLKNGTPEALVAAIRVVARGDGLIAPELTRRV-- 145

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +AA+     +          ELT RE E L  ++ G  + EIA  L +   TV  +++ +
Sbjct: 146 IAAFAGPGGEPTTTAVALP-ELTPREHEVLVLVASGANNAEIAAALRLGEATVKTHVSRV 204

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  + +V
Sbjct: 205 LAKLGLRDRVQAVVFAYEHGVV 226


>gi|291303089|ref|YP_003514367.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572309|gb|ADD45274.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +R G  LL P     L +R         +   
Sbjct: 92  VYAALSAGASGFLLKDVSPEHLVAAVRMVRDGDALLAPSITRRLVER---------FVGR 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +  +H      LT RE+E L  +++G ++ E+A  L +S  TV  ++A I+ K   +
Sbjct: 143 DGDTTAIHRDL-AALTPRELEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLQLR 201

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 202 DRVQAVIVAYETGLV 216


>gi|220906489|ref|YP_002481800.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863100|gb|ACL43439.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 236

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K     R+ A   A+R+ 
Sbjct: 174 PLTERELEVLQLIVEGDSNALIAEKLFITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 233

Query: 245 IV 246
           ++
Sbjct: 234 LI 235


>gi|118468464|ref|YP_885258.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169751|gb|ABK70647.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 215

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 43/88 (48%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L+   + A  +  + ++       D  LT RE E L  I+EG ++ EIA  L IS  TV+
Sbjct: 126 LYAGAITALIRDFLHRARQGGEPPDSILTPREEEVLKLIAEGYSTREIAATLTISAKTVD 185

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +I+ K   + R     YA+R  ++
Sbjct: 186 RHRTNILAKLGLRDRLALTRYAIRAGLI 213


>gi|71068215|gb|AAZ23070.1| possible response regulator [Streptomyces fradiae]
          Length = 241

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  +   +          +    F          A   + +     
Sbjct: 55  DVVLMDIRMPVMDGLEAAR--RVLAQAADCRVIMLTTFDLDHYVYAALAAGASGFLLKDV 112

Query: 136 DVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
             A +   + L+     ++      RL E     A       +          LT RE E
Sbjct: 113 TPAHLAAAVRLVGTGDALLAPSITRRLVERFTSGARGTGTGAATPAVHRDLAALTPRERE 172

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LT +  G ++ E+A  L +S  TV  +++ I  K A + R+ A+  A    +V
Sbjct: 173 VLTLMGRGLSNAELARELTLSEATVKTHVSRIFAKLALRDRAQAVVLAYETGLV 226


>gi|311103299|ref|YP_003976152.1| sensory box protein 1 [Achromobacter xylosoxidans A8]
 gi|310757988|gb|ADP13437.1| sensory box protein 1 [Achromobacter xylosoxidans A8]
          Length = 499

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 6/218 (2%)

Query: 33  LARMIPLDCTVSWTMR-MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
             R+ P+  T+S T   +  + +   A+     R     E  L  + +    +D  R MA
Sbjct: 272 AFRLAPVPMTLSSTTGELLEVNDAFVATTGYDARTLARDEDALAQLWTDPQAYD--RAMA 329

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPK 150
             E+       +               +  P +  D     +   D+   +   + L   
Sbjct: 330 SLEQGASVRSQEMALRTREGALLDCLVSAAPVSIQDQPCVLAAIQDITERKRSEVELMEA 389

Query: 151 GRIILRDRLW--EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              +++D  W     +    Q    +      G+  +LT RE E L  + +G T  EIA 
Sbjct: 390 IETVMQDTSWFSRTVIEKLAQIRAPQGAPQEQGELADLTPREREILGLMCQGHTDAEIAA 449

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +SRNTV N++A++  K     RS AI +A +  IV
Sbjct: 450 SLHLSRNTVRNHVAALYSKLDVHRRSAAIIWARQRGIV 487


>gi|223935792|ref|ZP_03627707.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895393|gb|EEF61839.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 13/182 (7%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLPENITP-PA 124
           EQ L +I +   P  ++  + L   D          L   T +     H  P  +     
Sbjct: 45  EQALAAIRTEPLPQVVLCDVGLPGMDGITGMSAIKALSPSTHVIMLTVHDDPHKVYGAIC 104

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         I   +  +   G  +        G +A      F   +     D+
Sbjct: 105 AGASGYLLKDASEEAITAAIHEVLNGGAPMN-------GRIARLVLGAFAQQNSTPHNDY 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE + L ++ +G    EIA  +G+S +TVNNY+  I  K    TR GA+A  V   
Sbjct: 158 GLSAREKDILQYMVKGLIKKEIAEEMGLSYHTVNNYLRRIYDKLHVHTRGGAVAKTVEEK 217

Query: 245 IV 246
           ++
Sbjct: 218 LL 219


>gi|182437202|ref|YP_001824921.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777832|ref|ZP_08237097.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465718|dbj|BAG20238.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658165|gb|EGE43011.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 222

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 5/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIG 143
           +R   ++  +    ++ R  E    V  T   +           + +        ++  G
Sbjct: 59  IRMPEMNGIEATREIVARDAEAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADG 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++         L+  +             +  +LT RE E L  I++G ++
Sbjct: 119 VRVVASGEALLAPTVTRR--LITEFSKLAEAPRPPALARIGDLTERETEVLVLIAQGLSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 177 AEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219


>gi|145295913|ref|YP_001138734.1| hypothetical protein cgR_1838 [Corynebacterium glutamicum R]
 gi|140845833|dbj|BAF54832.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 210

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E ++ +++G+++ EI   L ++  TV +++  +  K    +R+ A+A A +  I
Sbjct: 150 LSAREIEVVSLVAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGI 209

Query: 246 V 246
           +
Sbjct: 210 I 210


>gi|50956580|gb|AAT90827.1| acylhomoserine lactone dependent transcriptional activator
           [uncultured proteobacterium QS1]
          Length = 223

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 20/191 (10%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNRYCSLT 134
            I+ S++P D +          Y  V+      F P  +     + T   G +    +  
Sbjct: 33  PIIVSNYPDDWLMLYEARSYHLYDPVINYGMRRFAPFSWCDAQASDTADIGKELFQSAEK 92

Query: 135 FDVARIRIGLM----LLFPKGRIILRDRLWEIG------------LLAAYQANMFKSYDV 178
           + ++     ++     LF    +    R  + G             L  +  ++  +  V
Sbjct: 93  YQISSGFTFVLHDAAELFASLSVCRSGRGSDFGQRVADHSAEIQMALINFHDHILSTQTV 152

Query: 179 HWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE+E L W+ +GK   E+A+I  IS +TV  +I+ I  K        
Sbjct: 153 DELFPLPANLLSAREIEILQWVGKGKAYFEVAIICAISEHTVKFHISKISTKLNVLNAKQ 212

Query: 236 AIAYAVRNNIV 246
           A+  A+R  I+
Sbjct: 213 AVYEAIRRGII 223


>gi|15599116|ref|NP_252610.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116051961|ref|YP_789196.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296387556|ref|ZP_06877031.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|9950105|gb|AAG07308.1|AE004809_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115587182|gb|ABJ13197.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 906

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 9/137 (6%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLLAAYQANM- 172
            +    G +    +         +G     L  L  +    LR++L         Q    
Sbjct: 769 ALHLEQGREREALATLQQAMEGAVGGALLPLHELLVQQPEWLREQLQRFPACPGAQRMRA 828

Query: 173 ---FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                  +        L+GRE+  L  I++G ++ EI+  L IS +TV ++   I  K  
Sbjct: 829 LLPEPPAEPAGSAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLG 888

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R+ A+A A    ++
Sbjct: 889 VERRTQAVARAKHMGLL 905


>gi|312138632|ref|YP_004005968.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311887971|emb|CBH47283.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 205

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              EL+GREVE L  +++G ++  IA  L +S  TV +++     K    +R+ A+A A 
Sbjct: 140 PRVELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAAR 199

Query: 242 RNNIV 246
              ++
Sbjct: 200 ERGLI 204


>gi|298243182|ref|ZP_06966989.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
 gi|297556236|gb|EFH90100.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
          Length = 1019

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            LT RE+E L  ++ G TS +IA  L IS  TVN ++ SI  K    +RS A  YA+ + +
Sbjct: 958  LTTREIEVLRLLATGMTSAQIAEKLVISILTVNTHVRSIYSKLGVTSRSAATRYALEHKL 1017

Query: 246  V 246
            +
Sbjct: 1018 L 1018


>gi|283457818|ref|YP_003362412.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133827|dbj|BAI64592.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Rothia mucilaginosa DY-18]
          Length = 275

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 2/143 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDV-ARIRIGLMLLFPKGRIILRDRLWEIG 163
           P +L   +      +         R       V            P         L +  
Sbjct: 131 PEQLLEAIRTVHRGDAVIAPSATRRLLEHMIPVLDSPAGVPAAPVPVAPPAAGSELPKAT 190

Query: 164 LLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            + A  A+     D  H     +L+ RE E L  I+ G ++ EI   L +S  TV  +++
Sbjct: 191 FIPAEHASFEPVQDYPHRELIEQLSPREFEVLGLIARGLSNAEITRELVLSEATVKTHVS 250

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
            ++ K   + R  A+  A    I
Sbjct: 251 HVLAKLGARDRVQAVIMAYEAGI 273


>gi|302868391|ref|YP_003837028.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302571250|gb|ADL47452.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 212

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 10/163 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +   +    +  RP      +  T   +      ++                
Sbjct: 58  MDLQFGKGMGGAEATARITARPEAPRVLIVTTYDSDADTLPAIEAGATG----------Y 107

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   +    R    G          +  +        LT RE E L  +++G ++
Sbjct: 108 LLKDAPPEDLAAAVRTAAAGRTTLAPTVANRLMNRLRTPGTALTRRETEVLALVADGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I   L ++  TV +++A I  K    +R+ A+A A    ++
Sbjct: 168 HSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210


>gi|302559481|ref|ZP_07311823.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302477099|gb|EFL40192.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 221

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        R+  G+ ++     ++       +    +  +   +         
Sbjct: 96  RAGASGFLLKDASARRLAEGVRVVASGEALLAPTVTRRLITEFSKLSEAPRLMPAAHAAY 155

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A   
Sbjct: 156 GDLTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 215

Query: 244 NIV 246
            +V
Sbjct: 216 RLV 218


>gi|229145796|ref|ZP_04274176.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|296503725|ref|YP_003665425.1| two-component protein kinase [Bacillus thuringiensis BMB171]
 gi|228637627|gb|EEK94077.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|296324777|gb|ADH07705.1| two-component protein kinase [Bacillus thuringiensis BMB171]
          Length = 592

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       + +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 463

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|37681138|ref|NP_935747.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|320155205|ref|YP_004187584.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
 gi|326423837|ref|NP_760342.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6]
 gi|37199889|dbj|BAC95718.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|319930517|gb|ADV85381.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
 gi|319999206|gb|AAO09869.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6]
          Length = 215

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE++ L  +  GK++ +IA  L IS  TV +++    RK + K R  A A+A  
Sbjct: 152 NVDLTMREIQVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWA-D 210

Query: 243 NNIV 246
            N++
Sbjct: 211 QNLI 214


>gi|325134502|gb|EGC57147.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M13399]
 gi|325205973|gb|ADZ01426.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M04-240196]
          Length = 218

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 77/222 (34%), Gaps = 18/222 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +  ++I +D    +   + AL     G          L   + +  +     P  ++  +
Sbjct: 1   MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL----QPDVVLLDL 56

Query: 91  ALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +   +    + Q      +   +   V     +           Y     +   +   +
Sbjct: 57  DMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLTECIRIGARGYLLKNINADFLLESI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
             +     +   +      + A    ++         +    LT RE+E L +++ G ++
Sbjct: 117 RKVAEGDNVFSPE------MTAKLVKSLISPQPAQGTQALSSLTPRELEILGYLAAGHSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 171 KIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|260466579|ref|ZP_05812767.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029585|gb|EEW30873.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 525

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E L  I+ G T+ E A  L IS  T +++I S+  K    TR+ A  YAV + +
Sbjct: 458 MTPREIEVLRLIAAGLTAKEAARKLDISPKTADHHIQSVYAKIGVTTRAAAALYAVEHGL 517

Query: 246 V 246
           V
Sbjct: 518 V 518


>gi|9622950|gb|AAF89989.1|AF210630_2 AHL-dependent transcriptional regulator CinR [Rhizobium
           leguminosarum]
          Length = 241

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 27/234 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
               I     V   +R+      +    + L +      +     V + +P   V    L
Sbjct: 13  AFEQIKAAANVDAAIRILQAEYNLDFVTYHLAQTIAS--KIDSPFVRTTYPDAWVSRYLL 70

Query: 93  SEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIG 143
           +   K   ++++  E   P         PE           G+     S+       R  
Sbjct: 71  NSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRA 130

Query: 144 LMLLFPKG---------RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVE 192
           L+ L  +          R    + +    L+     +    Y++H   D    L+ RE+E
Sbjct: 131 LLSLNARIPADEWTELVRRCRNEWIEIAHLI-----HRKAVYELHGENDPVPALSPREIE 185

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 186 CLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|325002947|ref|ZP_08124059.1| NarL family two-component response regulator [Pseudonocardia sp.
           P1]
          Length = 236

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R I      E    A   + M +S          LT RE++ L  ++ G ++  I   L 
Sbjct: 142 RAIRAVSRGESAFDARSASAMVRSLSGGMPDRERLTDRELDVLRLLARGLSNRAIGAELF 201

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  ++ ++MRK     R+ A+  A +  ++
Sbjct: 202 ISETTVKFHVGNLMRKLMVSRRAEAVYAATKLGLL 236


>gi|311067149|ref|YP_003972072.1| DNA-binding response regulator, luxR family protein [Bacillus
           atrophaeus 1942]
 gi|310867666|gb|ADP31141.1| DNA-binding response regulator, luxR family protein [Bacillus
           atrophaeus 1942]
          Length = 200

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 70/183 (38%), Gaps = 8/183 (4%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           Q +  ++  D   ++V  ++         +  RP  L   V       I+    +   + 
Sbjct: 16  QGIKQLLEHDQDIEVVGTLSNPAVVHEEIICTRPDILITDVRMKSFNGISLTRTIKKAFP 75

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL--------AAYQANMFKSYDVHWGKD 183
            L   V         +    +      + +   +         ++  N    Y       
Sbjct: 76  ELKIVVLSGYAYDEYISAAYKAGANAYIKKENSINDLITTIKQSFVGNHIFPYHTINLSG 135

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT +E+E LT I+E KT+ EI+  L IS+ TV  YI+SI++K    +R GA+   ++ 
Sbjct: 136 ERLTHKELEVLTLIAEDKTNMEISTELMISKRTVERYISSIIQKMKANSRVGAVVNGIKQ 195

Query: 244 NIV 246
            ++
Sbjct: 196 GLL 198


>gi|229156784|ref|ZP_04284871.1| Two-component protein Kinase [Bacillus cereus ATCC 4342]
 gi|228626704|gb|EEK83444.1| Two-component protein Kinase [Bacillus cereus ATCC 4342]
          Length = 595

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 90/252 (35%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPYVRESLSILLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL---SEKDKYYNVLQRPTELFCPVFHTLP 117
             +V       Q +D +     P  ++  + +   +  +    + Q+   +   +F T  
Sbjct: 407 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMNGIEATKKIKQQWPHIRVLIFTTFQ 463

Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +    +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 EPPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|227514972|ref|ZP_03945021.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
 gi|227086671|gb|EEI21983.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
          Length = 217

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 40/74 (54%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F   DV+      L+ RE E    ++ G T+ EIA  L IS  TV  + A+I+RK   + 
Sbjct: 142 FDGVDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLEN 201

Query: 233 RSGAIAYAVRNNIV 246
           R+  + YA+ ++++
Sbjct: 202 RADLVRYAIHHHLI 215


>gi|15896845|ref|NP_350194.1| regulatory protein [Clostridium acetobutylicum ATCC 824]
 gi|15026710|gb|AAK81534.1|AE007857_7 Regulatory protein related to malT, positive regulator of mal
           regulon (ATPase and HTH-type DNA-binding domain)
           [Clostridium acetobutylicum ATCC 824]
 gi|325511019|gb|ADZ22655.1| Positive regulator of mal regulon (ATPase and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 862

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L  + +G ++ EI  IL IS +TV  ++ +I  K     R  A+  A 
Sbjct: 796 KECILSERELEVLEVLCDGNSNKEIGSILNISLSTVKTHMINIYSKLHVSNRLQAVEKAK 855

Query: 242 RNNIV 246
             N++
Sbjct: 856 ELNLL 860


>gi|317404517|gb|EFV84926.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 83

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 37/72 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S          L+ RE   L W + GKTS E A IL IS +TVN ++ +  RK   + R 
Sbjct: 7   SAIPRAPAPVRLSPRESASLHWSAIGKTSWETARILDISESTVNFHLRNACRKLQVRGRR 66

Query: 235 GAIAYAVRNNIV 246
            A+A A+R  ++
Sbjct: 67  AAVATAIRRGLL 78


>gi|291441190|ref|ZP_06580580.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291344085|gb|EFE71041.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 133

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              G    LT R+   L+ ++EG  + +IA++LG S +TV N I  IM +   + R+ A+
Sbjct: 65  ADGGGRPALTARQASVLSLMAEGYGNADIALLLGCSEHTVKNVIYEIMARLQARNRAHAV 124

Query: 238 AYAVRNNIV 246
           A+AVR+ +V
Sbjct: 125 AHAVRHGLV 133


>gi|312198290|ref|YP_004018351.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229626|gb|ADP82481.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 248

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 2/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  +       V   P  L    F                +     
Sbjct: 73  DVVLMDIRMPVMNGLEATRLIAADAVRPGPGILVVTTFDDDEYVFEALRAGAAGFILKDT 132

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++         L+AA+            G    LT RE   LT
Sbjct: 133 QPENLLAAIRTVAAGDALLAPGVTRR--LIAAFVRVPAPPASPLTGLASTLTDRERAVLT 190

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L +S +TV  ++  ++ K A + R+  +  A  + +V
Sbjct: 191 QIANGYSNAEIAQALYVSVSTVKTHVGHLLAKLAARDRAQLVIAAYESGLV 241


>gi|295839362|ref|ZP_06826295.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197699050|gb|EDY45983.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 226

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 5/186 (2%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               L     L  +V  D        +A + +      L     +    F      +   
Sbjct: 38  AEAVLLAASHLPDVVLMDIRMPGTDGLAATRRISADPALAAVHVVMLTTFEVDEYVVQSL 97

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHW 180
                 +     + A +   +        ++         L+  + A       +  V  
Sbjct: 98  RAGAAGFLGKGAEPAELLGAIRTAAAGEALLSPAATR--SLITRFLAQAPGTGPAAGVDS 155

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LTGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A
Sbjct: 156 ARLAALTGREREVLVQVAAGLSNDEIAERLEVSPLTVKTHVNRAMAKVGARDRAQLVVIA 215

Query: 241 VRNNIV 246
               +V
Sbjct: 216 YETGLV 221


>gi|123967708|ref|YP_001008566.1| LuxR family regulatory protein [Prochlorococcus marinus str.
           AS9601]
 gi|126695511|ref|YP_001090397.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9301]
 gi|123197818|gb|ABM69459.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. AS9601]
 gi|126542554|gb|ABO16796.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9301]
          Length = 92

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 41/63 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+ N
Sbjct: 14  MGLSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73

Query: 244 NIV 246
             +
Sbjct: 74  GKI 76


>gi|94969929|ref|YP_591977.1| LuxR family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551979|gb|ABF41903.1| transcriptional regulator, LuxR family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 153

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D    ++  +T RE+E LT ++ G ++ EIA  L +S NTV  + A    K     R+
Sbjct: 81  APDTARQQELGITAREMEILTLVAHGLSNREIATQLFVSENTVKTHCARAFDKLGAARRT 140

Query: 235 GAIAYAVRNNIV 246
            A+       ++
Sbjct: 141 QAVQRGKELGLL 152


>gi|37522644|ref|NP_926021.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35213645|dbj|BAC91016.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 232

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 17/191 (8%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           V  ++F +  +D +V        VR +   E     N+     +L   V           
Sbjct: 47  VSREIFTQTPIDFVVFE------VRSVGPFEHQIVQNLRAWSPQLRLLVVLLSANLEEAA 100

Query: 124 AGMDNRYCSLTFD----------VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
             +++   SL  +          + +  +G   + P   +     L          A + 
Sbjct: 101 RFIESGADSLWTEQSSVSVLLRAMRKTTLGQRWVDPACEVTSTL-LESNRSPQVAAAPVV 159

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
             +     +   L+ RE E L  I +G ++ +IA  L +S NTV N+++ I  K +   R
Sbjct: 160 PGHRAGVTQAVALSRREREILQLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNR 219

Query: 234 SGAIAYAVRNN 244
           + A+  A+   
Sbjct: 220 TQAVLKAMGTG 230


>gi|257791491|ref|YP_003182097.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|257475388|gb|ACV55708.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
          Length = 214

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F+TL          ++    L   V  +  G   + PK   +L  +L   G         
Sbjct: 92  FYTLRGGAAGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGG--------- 142

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               +       +L+ RE+E L  +++G T+ EI+  + +S  TV  + + I +K   KT
Sbjct: 143 ----EEEDRSYQQLSNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKT 198

Query: 233 RSGAIAYAVRNNIV 246
           R+  + YA+R+ ++
Sbjct: 199 RADLVDYALRHKLL 212


>gi|116250894|ref|YP_766732.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255542|emb|CAK06619.1| putative GerE/LuxR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 159

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +T RE E + W++ GKT+ EI  ILGIS  TVN +IA+   +      +  +A A+RN 
Sbjct: 97  NVTPRETEVIRWMAAGKTAAEIGTILGISHITVNTHIANAKARLGVFKDTALVAAALRNG 156

Query: 245 IV 246
           I+
Sbjct: 157 II 158


>gi|108803724|ref|YP_643661.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108764967|gb|ABG03849.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 253

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D     D  L+ RE+E L  I+ G+T+ EI   L +S  TV ++  SI RK   + R+ A
Sbjct: 183 DAPRRLDEPLSERELEVLKHIASGRTNSEIGRHLYVSVGTVKSHTGSIYRKLGVRNRAEA 242

Query: 237 IAYAVRNNIV 246
           IA A    ++
Sbjct: 243 IARARELKLL 252


>gi|271963222|ref|YP_003337418.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506397|gb|ACZ84675.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 207

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L+ ++ G T+ +I   L IS  TV  ++  +  K     R+ A+  A+   +
Sbjct: 145 LSPREAEVLSLVARGLTNAQIGKELFISETTVKTHLLRVFGKLGVSDRTAAVTTALDRGL 204

Query: 246 V 246
           +
Sbjct: 205 L 205


>gi|226228812|ref|YP_002762918.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226092003|dbj|BAH40448.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 207

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 37/79 (46%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           Y              +  LT RE++ L  ++ G ++  I   L IS +TV  ++++I+ K
Sbjct: 127 YVDPEVAGQMAEHSGEEGLTSRELQILHLVAGGLSNKRITSSLAISEDTVKGHVSNILSK 186

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R+ A+  A+R  ++
Sbjct: 187 LDANDRTHAVTLAIRRGVI 205


>gi|209528286|ref|ZP_03276747.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209491272|gb|EDZ91666.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 203

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 80/200 (40%), Gaps = 22/200 (11%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL--------Q 103
           +++Y+    + +   +  Q+      +  + P  ++  + + E D Y  V          
Sbjct: 13  ISDYLELRGYQVTIAENGQKAL--EKLEEEVPELIICDIMMPEMDGYTLVKLIRENAQFG 70

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
             + +F        + +       + Y    FD   +   +              L +  
Sbjct: 71  WISVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQV-----------ESSLRQTE 119

Query: 164 LLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L  Y+ ++ + S  +   +  ELT  E++ +  +++GK + EI+ I+ +S+ T+ ++I+
Sbjct: 120 RLTRYRKSVIEASQKIRVREGVELTPTELKVVELVAKGKGNREISKIMEVSQRTIESHIS 179

Query: 223 SIMRKTATKTRSGAIAYAVR 242
           +++ KT    R+    +A+ 
Sbjct: 180 NMLGKTGLHNRTQLARWALE 199


>gi|297197400|ref|ZP_06914797.1| LuxR family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|297146707|gb|EDY61643.2| LuxR family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 995

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
             +LL     +I R RL E    A+                  LT RE + L  ++ G++
Sbjct: 901 ATVLLEQADELIRRGRLTEAAPTAS-----------------PLTAREQDVLRLLARGRS 943

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   L I+  T + ++++I+ K    +R+ A+A A R  ++
Sbjct: 944 NRQIGEELFITGKTASVHVSNILAKLGAASRTEAVAVAYREGLI 987


>gi|300088236|ref|YP_003758758.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527969|gb|ADJ26437.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 232

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   L    +       R   +   +  +R G  +L         D +    LL      
Sbjct: 92  ILGLLEAGASGYLLKSARADEIVGAIRAVRAGESVL---------DSMATRKLLERVVNL 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  D       +L+ RE+E L   + G ++ +IA  L +S  TV  ++++I  K    
Sbjct: 143 SKEVPDEKGRG--QLSPREIEILRLAARGLSNRDIAEKLELSMRTVKAHLSNIFNKMRCS 200

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ AI    R   V
Sbjct: 201 SRTEAIVKGFREGYV 215


>gi|262203966|ref|YP_003275174.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087313|gb|ACY23281.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 230

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 9/179 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPV---FHTLPENITPPAGMD 127
            +  S  P   +  + +   D               E+   +   F          A   
Sbjct: 44  ELARSHHPDVAILDIRMPGTDGLTATRTITANPDLAEVKVLILTTFELDEYVFEAVAAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFEL 186
           + +         +   + ++     ++        I   A    +         G    L
Sbjct: 104 SGFLVKHTQPEELVRAVRVIAAGDALLSPSVTRRLISRFADAGRSPTTPVTPGGGPVSAL 163

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E +  +++G +++EIA    +S  TV  +++  M K   + R+  + +A R  +
Sbjct: 164 TERETEVVRLVADGLSNEEIAQRWVVSNATVRTHVSRAMTKLDARDRAQLVVFAYRLGL 222


>gi|221633170|ref|YP_002522395.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum
           DSM 5159]
 gi|221156902|gb|ACM06029.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum
           DSM 5159]
          Length = 261

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECL 194
           R  + ++     G   L  ++ +   LA       + Y V        D  LT RE++ L
Sbjct: 139 REMLAVLEAVVAGEDRLPQQILDRPHLARRVLGELQRYVVGEAGLESPDAVLTVRELQVL 198

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             +++G ++ EIA  L I+  TV N++ SI+RK   + R   I  AVR  
Sbjct: 199 DCVAQGMSNKEIAEALFITEQTVKNHMTSILRKLGAQDRVDVILAAVRQG 248


>gi|152999817|ref|YP_001365498.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS185]
 gi|151364435|gb|ABS07435.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
          Length = 216

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 86/222 (38%), Gaps = 13/222 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D+   +I +       +    +   +  S  + V W     Q   S ++++    L+  +
Sbjct: 2   DMQNNIISVGLVEDQQLVRQGIASLLAISDNIRVVWQAEDGQDALSQLANNPVDVLLSDI 61

Query: 91  ALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPA----GMDNRYCSLTFDVARIRIGL 144
            +   D    +  +++       +  T  ++            N +      + ++   +
Sbjct: 62  RMPNLDGIAMLKQIRQSANRLPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLHAI 121

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G +I    L ++            +  V   ++  L+ RE E L++++ G ++ 
Sbjct: 122 ETVAKGGYLIEPSVLKQMS-------EPKPAPSVGVTRNELLSEREREILSFMAGGFSNK 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  + ++  TV N++++I+ K   + R+ A+   ++  ++
Sbjct: 175 EIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLALI 216


>gi|111021179|ref|YP_704151.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110820709|gb|ABG95993.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 223

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 9/156 (5%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFP 149
           S  D    +++R   L   V     ++ +  A +      Y     D   +   +  +  
Sbjct: 70  SGVDATRRLVERHPALRVLVVTMHEDDESLVASVRAGARGYLVKGADPGEVERAVRAVAN 129

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              I+         + A   + M  S  V      ELT RE E L  ++ G  +  I+  
Sbjct: 130 GEVIL------GAAVAARAMSFMAASRRVGPTVFPELTDREREVLDLVARGYDNASISRR 183

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L +S  TV N++++++ K     R  AI  A    +
Sbjct: 184 LVLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 219


>gi|302537227|ref|ZP_07289569.1| two-component system response regulator [Streptomyces sp. C]
 gi|302446122|gb|EFL17938.1| two-component system response regulator [Streptomyces sp. C]
          Length = 242

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 52/158 (32%), Gaps = 1/158 (0%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +   E  +  +       +    F +            + +         +   + ++  
Sbjct: 61  LDGIEACRVISARSACRTVMLTTFDSDEYVYEALHAGASGFLLKDVRRDDLVHAVRVVAA 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208
              ++       +            + D    +    LT RE E L  +  G ++ EIA 
Sbjct: 121 GESLLAPSVARRLIEEYTAVTARPAAPDPLAAERLGVLTARERETLLHLGRGLSNAEIAA 180

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S +TV +++ +++ K   + R  A+  A    ++
Sbjct: 181 ALVVSEHTVKSHVGNVLSKLGLRDRIQAVICAYETGLI 218


>gi|300856053|ref|YP_003781037.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300436168|gb|ADK15935.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 224

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L+ IS+G ++ EI   L IS  TV NY  ++ +K     R  A   A+ NN
Sbjct: 154 NLSKREIEVLSKISKGYSNKEIGKQLYISEKTVKNYATNLFKKINVDDRVHAAIVAIENN 213

Query: 245 I 245
           I
Sbjct: 214 I 214


>gi|229489109|ref|ZP_04382975.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
 gi|229324613|gb|EEN90368.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
          Length = 209

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 18/172 (10%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITPPAGMDNRYC-- 131
           + S  P  ++  + +         ++R      ++   VF T   +      +D      
Sbjct: 46  IPSASPDLVMMDLDMGTGMHGAEAIKRLRSDGVDVPVLVFTTYDTDADVVRAVDAGAIGY 105

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
            L         G +     GR +L        + +     M +  +        LT RE 
Sbjct: 106 LLKDSTPDEIFGAVRGAVAGRSVLSP-----AVASRLVQQMQRPQEA-------LTARES 153

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E L+ ++EG T+ E+   L IS  TV  ++  I  K    TRS A++ A+R 
Sbjct: 154 ELLSLLAEGMTNRELGKALFISEATVKTHLGHIYAKLGVDTRSAAVSVALRR 205


>gi|229046883|ref|ZP_04192515.1| Two-component protein Kinase [Bacillus cereus AH676]
 gi|228724428|gb|EEL75753.1| Two-component protein Kinase [Bacillus cereus AH676]
          Length = 592

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       + +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 463

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|148241325|ref|YP_001226482.1| transcriptional regulator [Synechococcus sp. RCC307]
 gi|147849635|emb|CAK27129.1| ranscriptional regulator, luxR family [Synechococcus sp. RCC307]
          Length = 92

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 39/63 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  ++   T+ EIA+ L IS+ TV+N++++I  KT ++ R   + +A+ N
Sbjct: 16  IHLSERELEIIELVAAELTNQEIALRLSISKRTVDNHVSNIFTKTGSRNRVALVNWALSN 75

Query: 244 NIV 246
             +
Sbjct: 76  GKI 78


>gi|194366116|ref|YP_002028726.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194348920|gb|ACF52043.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 217

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE E L  ++ G ++  I   + IS  TV  ++ S+M K     R+ A+  A+R
Sbjct: 146 EDRLSPRETEVLRHVAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALR 205

Query: 243 NNIV 246
             I+
Sbjct: 206 RGII 209


>gi|330465133|ref|YP_004402876.1| LuxR family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328808104|gb|AEB42276.1| LuxR family transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 386

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 45/84 (53%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G + A   +             ELTGREVE L  +  G ++ ++A  LGIS  TV  ++
Sbjct: 285 VGAVPADGVSATAVPGPRVAAVAELTGREVEVLDCLVAGMSNKQVARALGISVRTVTVHV 344

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
           ++++RKT   +R+ A  +AVR  +
Sbjct: 345 SNLLRKTGAASRTEAALWAVRQRL 368


>gi|302552866|ref|ZP_07305208.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470484|gb|EFL33577.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 226

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 1/171 (0%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D        +A +        L     L    F T            + +     
Sbjct: 50  DIVLMDIRMPGTDGLAATAALCADPELSSTRVLILTTFETEDYVAQALRAGASGFLGKDV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +  GL  +     ++       + +     A    ++     +  +LT RE E + 
Sbjct: 110 TADTLLAGLRTVASGESLLSPVATRSL-ITRFLLAPAPGTHLAPPERLADLTVREREVMA 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +EG+++ EIA  L +S  TV  +I   M K   + R+  +  A +  +V
Sbjct: 169 LAAEGRSNTEIAEDLTLSPLTVRTHIHRAMTKLNARDRAQLVVIAYQTGLV 219


>gi|330988560|gb|EGH86663.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 909

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 17/178 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYC-------SLTF 135
           D ++   ++ + +   + +   E+  P+     + + I        R         SL  
Sbjct: 732 DRLQGDDVASEQRLQALERHAREVGAPLLGLIAMTQQIGLLLSQTRRDEARELLLRSLQS 791

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTG 188
                 I    L  +    L ++L ++        LL    A+   + +   G D  L+ 
Sbjct: 792 AAGGALIPFKTLLGEHSQWLHEQLLQLPSCKVREALLEELPASCTPTLEPAHGSDC-LSV 850

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    ++
Sbjct: 851 RELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGLL 908


>gi|326792257|ref|YP_004310078.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium lentocellum DSM 5427]
 gi|326543021|gb|ADZ84880.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium lentocellum DSM 5427]
          Length = 519

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWIS 198
           I     LL  +   +L+    E+ LL A      ++  V   K+ + LT +E E L+ ++
Sbjct: 411 IVASFYLLGREILPLLKKIDQEVYLLVAQFHKENETSKVGIKKEEYLLTPKEREILSLVA 470

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG+++ EI   L ++  TV  ++  I+ K   K R  A++ A +   +
Sbjct: 471 EGRSNAEIGDQLYLTIGTVKWHMNHILGKLEVKNRIQAVSEARKLGEI 518


>gi|312198094|ref|YP_004018155.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229430|gb|ADP82285.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 219

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++ AY+  +          D  LT RE + L  ++ G+ + EIA  L +S  TV ++I +
Sbjct: 133 MMRAYRGAVASRRREAARLDL-LTAREHDVLRLLARGQVNAEIAQALRVSPGTVKSHIGA 191

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K   + R+ AI +A  + IV
Sbjct: 192 IFEKLGVRDRAAAIVFAFDHGIV 214


>gi|255324053|ref|ZP_05365178.1| transcriptional regulatory protein DegU [Corynebacterium
           tuberculostearicum SK141]
 gi|255298910|gb|EET78202.1| transcriptional regulatory protein DegU [Corynebacterium
           tuberculostearicum SK141]
          Length = 205

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 18/166 (10%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARI 140
           +V  + + + D      +       PV       T  + +         Y         +
Sbjct: 53  VVCDIQMPDMDGIAATKRVVEAGGPPVLILTTYDTQADILAAVEAGAMGYLLKDSPEQAL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++      R +  +    + LLA                   L+ RE+E L  +S G
Sbjct: 113 HEAVLNTAAHRRTLAPEV---VDLLAQRVGR----------PQESLSARELEILRALSSG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ E+A  L IS  TV  ++  I +K   +TR+ A+  A    ++
Sbjct: 160 SSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205


>gi|148255499|ref|YP_001240084.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1]
 gi|146407672|gb|ABQ36178.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1]
          Length = 213

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 71/212 (33%), Gaps = 21/212 (9%)

Query: 54  EYVGASHFL-LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
           E  G   F  L       E   D++  + +P   V     +  D+   V+ R      P 
Sbjct: 2   EQYGFPCFAYLSFAPRGDE--DDALAITTYPSAWVEQYRANRYDRIDPVIARSVATTLPF 59

Query: 113 ------FHTLPENITPPAGMDNRYC-----SLTFDVARIRIGLMLLFPKGRIILRDR--- 158
                 F  L           + +      ++     + ++  + L         +    
Sbjct: 60  AWSTDQFDALNNRQKWFLEEASEFEIRHGVTIPIHDRQGKVATLTLAACEARSAFEAQIS 119

Query: 159 --LWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISR 214
               E+ L+A Y     +             LT RE  CL W + GK++ + A I+ +SR
Sbjct: 120 KYRHELHLIAIYLYARLRDVTPTPASPLRPCLTQRERICLQWAARGKSALDTAEIINVSR 179

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  +  +  RK    T   A+A  +  +I+
Sbjct: 180 RTVVFHTQNAKRKLGVATVQQAVAKGLAYDII 211


>gi|119717865|ref|YP_924830.1| two component LuxR family transcriptional regulator [Nocardioides
           sp. JS614]
 gi|119538526|gb|ABL83143.1| two component transcriptional regulator, LuxR family [Nocardioides
           sp. JS614]
          Length = 215

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 2/171 (1%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +V++  P  L+  + + E D    + +   +E    V      ++        R  +  F
Sbjct: 42  LVTAGAPDVLLLDVQMPEVDGLAAMTEIEASESSTRVLMLTTFDLDEYVYQAMRAGAAGF 101

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECL 194
            +  +    ++   +      D L    +         +           +LT RE + L
Sbjct: 102 LLKDMAGEDIVAAVRQVAHGADALLAPAVTRRLVDRYTRERRRPPAPALDQLTPREHDVL 161

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             I+ G ++ EIA  L I   TV  ++A ++ K   + R  A+  A  + +
Sbjct: 162 RLIAAGLSNAEIAAELFIGETTVKTHVARVLMKLRLRDRVQAVVLAYESGL 212


>gi|322436726|ref|YP_004218938.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321164453|gb|ADW70158.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 209

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 21/164 (12%)

Query: 89  CMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARIRI 142
            + L   D +  + +      +    +  T  ++      M     +    +  +  + +
Sbjct: 59  DLRLPGTDGFATLAEIRQLNPDARVIILTTSEDDADVRRAMRGGASAYVLKSLPMQELVV 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  ++   + +  +        AA  A  F         D +LT RE++ L  I +G+ 
Sbjct: 119 TIRSVYSGTKHVPHE-------FAARMAERF--------GDEKLTDRELDVLKLIRDGRR 163

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L I+  TVN +I +I +K     R+ A+  A+R  ++
Sbjct: 164 NKQIASDLKIAEATVNFHIKNISQKLQANDRTHAVMIALRRGLL 207


>gi|298485722|ref|ZP_07003801.1| ATP-dependent transcriptional regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159748|gb|EFI00790.1| ATP-dependent transcriptional regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 909

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 17/178 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYC-------SLTF 135
           D ++   ++ + +   + +   E+  P+     + + I        R         SL  
Sbjct: 732 DRLQGDDVASEQRLQALERHAREVGAPLLGLIAMTQQIGLLLSQTRRDEARELLLRSLQS 791

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTG 188
                 I    L  +    L ++L ++        LL    A+   + +     D  L+ 
Sbjct: 792 AAGGALIPFKTLLGEHSQWLHEQLLQLPSCKVREALLEELPASCTPTPEPAHDSDC-LSV 850

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    ++
Sbjct: 851 RELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKALGLL 908


>gi|226308907|ref|YP_002768867.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226188024|dbj|BAH36128.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 209

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE E L+ ++EG T+ E+   L IS  TV  ++  I  K   +TRS A++ A+
Sbjct: 144 PQEALTARESELLSLLAEGMTNRELGKALFISEATVKTHLGHIYAKLGVETRSAAVSVAL 203

Query: 242 RN 243
           R 
Sbjct: 204 RR 205


>gi|166368199|ref|YP_001660472.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
 gi|166090572|dbj|BAG05280.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
          Length = 93

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE+E L  ++ G T+ EI+  L IS+ TV+N+I++I+ KT T  R   + +A+   
Sbjct: 12  LSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWALHWG 70


>gi|152987214|ref|YP_001346031.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150962372|gb|ABR84397.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7]
          Length = 496

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189
                D++  R   M L      +++D  W    L    AN+ ++     G +  +LT R
Sbjct: 370 LVALLDISDRRRTEMELVHAIETVMQDTSWFSRTLIEKLANVRRANAPGTGAELADLTAR 429

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E E    I +G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 EREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484


>gi|332706274|ref|ZP_08426342.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332354979|gb|EGJ34451.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 215

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 76/198 (38%), Gaps = 20/198 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110
           +Y+    + ++  +  +E     I+  D P  ++  + + E D Y     V         
Sbjct: 27  DYLEFRGYEVMTAEHGKEALD--ILEQDIPDMIICDVMMPEMDGYTLVEKVRDDSRTSCI 84

Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           PV     +      I       + Y    F+   +   +     +   +++        L
Sbjct: 85  PVLFLSAKGQSQDRIKGLNKGADIYMVKPFEPEELVAQVESCLKQTARMMQ--------L 136

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                +     +V +  D +LT  E + + +++ G  + EIA  L +S+ T+ +++++++
Sbjct: 137 TVSNPDSAPRINVPY--DVDLTPTERKVVQFVARGMANREIAQQLNVSQRTIESHVSNML 194

Query: 226 RKTATKTRSGAIAYAVRN 243
            KT    R+    +A+ N
Sbjct: 195 GKTGLHNRTELARWAIEN 212


>gi|159029157|emb|CAO87517.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 93

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE+E L  ++ G T+ EI+  L IS+ TV+N+I++I+ KT T  R   + +A+   
Sbjct: 12  LSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWALHWG 70


>gi|108797570|ref|YP_637767.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119866657|ref|YP_936609.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|126433193|ref|YP_001068884.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|108767989|gb|ABG06711.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119692746|gb|ABL89819.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
 gi|126232993|gb|ABN96393.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 215

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 44/88 (50%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L+   + A  +  + ++       D  LT RE E L  ++EG ++ EIA  L IS  TV+
Sbjct: 126 LYAGAVTALIRDYLHRARSGDELPDTILTPREEEVLKLVAEGYSTREIAATLSISAKTVD 185

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + A+I+ K   + R     YA+R  ++
Sbjct: 186 RHRANILAKLGLRDRLALTRYAIRAGLI 213


>gi|114765847|ref|ZP_01444940.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541846|gb|EAU44883.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 204

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 67/192 (34%), Gaps = 15/192 (7%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           E +G S +      +  +   D +V  D+    +  +    + +     +R   +     
Sbjct: 27  ETIGVSTYPEAEARVATDGPFD-LVLLDYSMPGMNGLTGFTRMQALPGARRVAIISGTAS 85

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
             + E +         +   T     +   +  +    +    D +      A  +  + 
Sbjct: 86  REVAEKVLEAGAA--GFLPKTLSAKSLVNAVRFMAMGEQYAPLDFMR-----AEEETEVN 138

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              +       +L+ RE+E L  +++GK++ EIA  L I   TV  ++ S+ RK     R
Sbjct: 139 PLAE-------KLSPRELEVLEGLTQGKSNKEIARDLDIREPTVKLHVKSLYRKINASNR 191

Query: 234 SGAIAYAVRNNI 245
           + A   A    +
Sbjct: 192 THAAMIAKEAGL 203


>gi|269837299|ref|YP_003319527.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786562|gb|ACZ38705.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 219

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +++G +  EIA  L IS  TV  +I +I+ K    +R  A+  A R+N
Sbjct: 155 PLTDREREVLQALADGLSDKEIAERLYISPATVRTHITAILGKLDANSRLQAVVVAARHN 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|94969470|ref|YP_591518.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551520|gb|ABF41444.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 215

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 13/221 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +P+  DL+ R++ +D        + AL         L+      +E        S  P  
Sbjct: 1   MPSNHDLI-RILTVDDHPLLRKGIAALV-NGEPDLKLVAEASNGEEAIHAY--RSHQPDV 56

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  + +   D          +    +    PE         +    +   +       +
Sbjct: 57  TLMDLQMPGIDG--------LQAIDSIRREFPEARIIILTTYSGDVQVLRALKAGARAYI 108

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L     + +L D +  +            +       D  LT RE++ L  I EG ++  
Sbjct: 109 LKGHVHKDLL-DTIRAVHAGQKRIPAEIAAELADHAVDDHLTERELDVLRLIGEGNSNKL 167

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L I   TV +++ +I+ K     R+ A+   +R  I+
Sbjct: 168 IADQLSIGEATVKSHVTNILSKLGASDRAHAVTIGLRRGII 208


>gi|300866265|ref|ZP_07110976.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
 gi|300335736|emb|CBN56136.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
          Length = 215

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 81/200 (40%), Gaps = 22/200 (11%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV---LQRPTELFC 110
           +Y+    + +V  +  +E      +  D P  ++  + + E D Y  V    + P   + 
Sbjct: 27  DYLEFRGYDVVTAENGREALEK--LEEDLPDLIICDVMMPEMDGYTLVKHVREDPRTSWI 84

Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           PV     +      +   +   + Y    F+   +   +              L +   L
Sbjct: 85  PVLFLSAKGQSQDRVKGLSTGADVYIVKPFEPEELVAQV-----------ESSLKQATRL 133

Query: 166 AAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             +Q N   S   +   ++ +LT  E++ +  +S+G  + +IA ++ +S+ T+ ++++++
Sbjct: 134 IRHQNNAIDSGPKIKARRNVDLTPTELKVVQLVSQGLANRDIADVMNVSQRTIESHVSNM 193

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           + KT    R+    +A+ + 
Sbjct: 194 LGKTGLHNRTELARWALESK 213


>gi|296130423|ref|YP_003637673.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022238|gb|ADG75474.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 223

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 25/175 (14%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P + +R +          +L  P            E +     +  R   L  DV R  +
Sbjct: 62  PAEAIRRLRAVAPSAAVVLLAGP---------DDGEALDRALALGARGF-LAPDVGRAEL 111

Query: 143 GLMLLFPKGRIILRDR-----------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +    +   +               L E     A      +  D        LT RE+
Sbjct: 112 AAVAAHVQASPVSSGPAAPALPHPASPLQETHAARADAGVAPRQVDTGPV----LTKREI 167

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  +S G+++ +I   L +S +TV  +   + RK     R+ A+A  +R  I+
Sbjct: 168 EVLVGMSHGRSNAQIGQELFLSEDTVKTHARRLFRKLGASDRAQAVAIGLRRGII 222


>gi|320334053|ref|YP_004170764.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755342|gb|ADV67099.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 225

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 8/162 (4%)

Query: 87  VRCMALSEKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   +   +    +  R  P  +    F      +       + Y     DV  +R  +
Sbjct: 68  VRMPGMGGVEATAQLRARSGPPVVLLTTFEEEDAMVGGLQAGASGYLLKDVDVVTLRDTI 127

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +    R + + R+ E+  LA   +   +   V   +   LT RE E L  I+ G  + 
Sbjct: 128 VRVARGERYV-QPRVAEV--LADALSRERRGVTVTPER---LTPRETEILALIARGLANK 181

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L ++  TV  ++++I+ K     R  A+  A    ++
Sbjct: 182 RIAQALTLTEGTVKVHVSNILGKLGATDRLDAVRVAREAGLL 223


>gi|28871776|ref|NP_794395.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966768|ref|ZP_03394919.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383276|ref|ZP_07231694.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302062485|ref|ZP_07254026.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302133467|ref|ZP_07259457.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28855028|gb|AAO58090.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928618|gb|EEB62162.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331018915|gb|EGH98971.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 77

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + 
Sbjct: 16  NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75


>gi|255532850|ref|YP_003093222.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345834|gb|ACU05160.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 206

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 38/79 (48%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           Y    F S  +       +T RE E L  I+EG T+ EIA  L IS  TVN +  S++ K
Sbjct: 128 YSQEAFSSLRIPAPDQLLITRREKEVLLLIAEGLTNAEIAEKLFISIPTVNTHRKSLIEK 187

Query: 228 TATKTRSGAIAYAVRNNIV 246
              K  +  I  A++  ++
Sbjct: 188 FNVKNTAMLIGKAIKLGLI 206


>gi|190892657|ref|YP_001979199.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT
           652]
 gi|190697936|gb|ACE92021.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 260

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 25/218 (11%)

Query: 49  MYALTEYVG--ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
           +  L    G     + L +      +     V + +P   V    L+   K   ++++  
Sbjct: 46  IRILQAEYGLDFVTYHLAQTIAS--KIDSPFVRTTYPDAWVSRYLLNSYVKVDPIVKQGF 103

Query: 107 ELFCPV-----------FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL-------F 148
           E   P            +  L +      G +     +     R  +  M          
Sbjct: 104 ERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRALLSMNARIPADGWS 163

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              R    + +    L+  +Q  +++ Y  H      L+ RE+ECL W + GK   +I+V
Sbjct: 164 ELVRRCRNEWIEIAHLI--HQKAVYELYGEH-DPVPALSPREIECLHWTALGKDYKDISV 220

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 221 ILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 258


>gi|158333495|ref|YP_001514667.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158303736|gb|ABW25353.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 225

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 77/217 (35%), Gaps = 14/217 (6%)

Query: 39  LDCTVSWTMRMYALTEYVGAS---HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
            D   ++   +  L  +  A     F +V      +Q +  +     P  L   + L + 
Sbjct: 12  ADDQPTFRQGLRTLLGFYQAQESFQFHIVGEAASADQAIS-LALEQHPTLLFLDLELPKD 70

Query: 96  DKYYNVLQRPTE-----LFCPVFHTLPENITPP-AGMDNRYCSLTFDVARIRIGLMLLFP 149
           D    +     +     +     H   E +        + Y   +     +   +  +  
Sbjct: 71  DGVAALQHLRQQNYTGKILVISAHQEDEWVFRAMRAGADGYVFKSQLAMNLHQAIQTVLK 130

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               +  D     G   ++  + ++   V   +   LT RE + L W+ +G ++  IA  
Sbjct: 131 NEVFLPPDA--ATGFFRSF--HFYEGRAVQSEQTLHLTAREKQVLHWLVQGASNQAIANH 186

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+  TV  ++ ++  K   K+RS AI  A++  +V
Sbjct: 187 LHITIATVKAHLTAVFEKLEVKSRSQAIVKALKLGLV 223


>gi|271963099|ref|YP_003337295.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270506274|gb|ACZ84552.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 916

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 46/82 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+A  A + +       +   LTGRE E L  ++EG  + EI   L I++ TV+ ++++I
Sbjct: 835 LSAALAELGRRARFAPAQPGLLTGREREVLALVAEGLPNREIGERLFIAQKTVSVHVSNI 894

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K    +R+ A A A +++++
Sbjct: 895 LGKLGVSSRTQAAAVARKDDLL 916


>gi|124022984|ref|YP_001017291.1| hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT
           9303]
 gi|123963270|gb|ABM78026.1| Hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT
           9303]
          Length = 233

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 8/179 (4%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              + + D + +SD   DL +   +    +         E+   +F            +D
Sbjct: 62  AIGKHRPDILFTSD---DLEQGYGIDLVKEAKLA---CAEIKALIFLRRETKEVVDEALD 115

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                + F V+ +  G           L+  ++    +     +  +  D     D +LT
Sbjct: 116 AGADGVIF-VSSVGSGNGDFIQSLLTTLKGGIYYPADVRELARDTKQPNDA-PVIDCQLT 173

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I  G ++ EI+  L +S  TV + +++I+ K   + R+ A  +A+R+ IV
Sbjct: 174 ERELEVLNAIVGGLSNKEISESLFVSSETVKSNVSTIISKLGVRVRTQAAVFAIRHRIV 232


>gi|107026084|ref|YP_623595.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|116692732|ref|YP_838265.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|105895458|gb|ABF78622.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia AU 1054]
 gi|116650732|gb|ABK11372.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
          Length = 312

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 61/177 (34%), Gaps = 7/177 (3%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           L     L  + +   IV +D         A      Y      P +   P      +  T
Sbjct: 124 LYAEAALSLDTRAALIVGADGTIRWQSPQAARHIAAYTTAHDAPADARQPTTARDTDAPT 183

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--- 178
               +   +      +AR   G  +       I R      G        + K  D    
Sbjct: 184 QLPALLRTWFVDW--LARGAPGDAVHEFSSGPIRRSASATRGPEPGEWIVILKERDDTVH 241

Query: 179 --HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                + F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR
Sbjct: 242 CNALAERFGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298


>gi|310659628|ref|YP_003937349.1| transcriptional regulator yhcz [Clostridium sticklandii DSM 519]
 gi|308826406|emb|CBH22444.1| putative transcriptional regulator YhcZ [Clostridium sticklandii]
          Length = 222

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 182 KDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           KDF+L T RE E +  IS+GK++ EIA  L +S  TV N+I +I++K   + R+      
Sbjct: 152 KDFDLLTRREYEIVGLISQGKSNLEIADDLFLSERTVKNHIHNILKKVNLQDRTQIAIAN 211

Query: 241 VRNNIV 246
           +R  IV
Sbjct: 212 LRYRIV 217


>gi|295105926|emb|CBL03469.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 214

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F+TL          ++    L   V  +  G   + PK   +L  +L   G         
Sbjct: 92  FYTLRGGAAGYVLKNSTSEELLSAVHAVAGGGSYIHPKMAALLTKQLVGAG--------- 142

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               +       +L+ RE+E L  +++G T+ EI+  + +S  TV  + + I +K   KT
Sbjct: 143 ----EEEDRSYQQLSNRELEILQLLAKGYTNKEISEQVYLSVKTVEAHRSKIYKKLGFKT 198

Query: 233 RSGAIAYAVRNNIV 246
           R+  ++YA+ + ++
Sbjct: 199 RADLVSYALEHKLL 212


>gi|290957183|ref|YP_003488365.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260646709|emb|CBG69806.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 974

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 157 DRLWEIGLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           DRL  + L AA  A + +   +     G    LT RE + L  ++ G+T+ +I   L I+
Sbjct: 879 DRLGAVTLRAALDALVRRGRLAETSTAGNVPALTARESDVLRLLALGRTNRQIGDELFIT 938

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             T + ++++I+ K    +R+ A+A A R  ++
Sbjct: 939 GKTASVHVSNILAKLGAASRTEAVAIAYREGLI 971


>gi|226310364|ref|YP_002770258.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093312|dbj|BAH41754.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +S GK +D+IA  L IS  TV  +I  I++K   + R+ A+A A+R  
Sbjct: 173 QLTDRERDVLEQLSYGKRNDQIAQHLLISGGTVKTHIHRILQKMGVEDRTQAVAKAIRYK 232

Query: 245 IV 246
           IV
Sbjct: 233 IV 234


>gi|223937482|ref|ZP_03629386.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893833|gb|EEF60290.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +A      F+       K+ +L+ RE E L  +S+G T+ EIA  L +S NTV  ++ 
Sbjct: 128 SQIARRVVQSFREVPREPVKNEKLSQREEEILQQLSKGYTTKEIAERLSVSVNTVRTHLQ 187

Query: 223 SIMRKTATKTRSGAIAY 239
            I  K   ++R+ A+  
Sbjct: 188 HIYEKLHVRSRTEAVVK 204


>gi|160874438|ref|YP_001553754.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|160859960|gb|ABX48494.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315266674|gb|ADT93527.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 216

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N +      + ++   +  +   G +I    L ++            +  V   ++ 
Sbjct: 102 AGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQMS-------EPKPAPSVGETRNE 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L++++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   ++  
Sbjct: 155 LLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLA 214

Query: 245 IV 246
           ++
Sbjct: 215 LI 216


>gi|311894021|dbj|BAJ26429.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 5/145 (3%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           R   L    F              + +         +  G+  +     ++         
Sbjct: 75  RSRVLVLTTFDLDEYAHAALRAGASGFLLKDAHPEELLAGVRAVAGGDAVVAPAITRR-- 132

Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           LL AY  ++          D  L   TGRE E L  ++ G T+ EIA  L +S +TV  +
Sbjct: 133 LLDAYAHHLPARPPGPVDDDPRLAALTGREREILLAVARGWTNGEIAARLVLSESTVKTH 192

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
           +  ++ K   + R  A+  A    +
Sbjct: 193 VGRVLAKIGARDRVQAVILAYDLGL 217


>gi|291299597|ref|YP_003510875.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568817|gb|ADD41782.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 135

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDFELTGREV 191
           +AR  + ++      R +    +    LL A  A     ++ K+  V       L+ RE 
Sbjct: 19  IARSAVHIVREARASRRLEPLTIDGRMLLTAVTALGIDLDVPKTVSVPASLRRGLSQRET 78

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  I+ GK++ EI   L I+ +TV  +   + RK   + R+ A+A A R  I+
Sbjct: 79  QVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRTGIL 133


>gi|254421507|ref|ZP_05035225.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
 gi|196188996|gb|EDX83960.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
          Length = 101

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 43/70 (61%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + +V      +L+ RE+E +  ++ G T+ EI+  L IS+ TV+N++++I+ KTA   R 
Sbjct: 15  TDEVIESAQHDLSKRELEIVELVAAGLTNQEISQRLEISKRTVDNHVSNILSKTAAGNRV 74

Query: 235 GAIAYAVRNN 244
             + +A+++ 
Sbjct: 75  ALVRWALQSG 84


>gi|145596336|ref|YP_001160633.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305673|gb|ABP56255.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 228

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y + T     +   +  +     +           L
Sbjct: 92  RFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELAAAVRRVAEGDAVFSP-------RL 144

Query: 166 AAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           A +  + F +       D EL   T RE E L  ++ G    EIA  L IS  TV  +++
Sbjct: 145 AGFVLDAFAARPDAPVSDPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVS 204

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK    +R     +A    +V
Sbjct: 205 NVLRKLQMSSRYELSRWAADRRLV 228


>gi|260060932|ref|YP_003194012.1| LuxR family transcriptional regulator [Robiginitalea biformata
           HTCC2501]
 gi|88785064|gb|EAR16233.1| transcriptional regulator, LuxR family protein [Robiginitalea
           biformata HTCC2501]
          Length = 139

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  D    +   LT RE E L  + +G ++ EIA  L IS +TV  ++++++ K   + R
Sbjct: 62  READQRKIRQLGLTPRECEVLLPLCKGLSNREIADELHISESTVKTHVSNLLVKLDVRRR 121

Query: 234 SGAIAYAVRNNIV 246
           +  I  A   N++
Sbjct: 122 TQVIRKARALNLL 134


>gi|328754436|gb|EGF68052.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
          Length = 218

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 10/176 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V    P  ++  + +   D       ++  +++   +  T   +      +D      
Sbjct: 40  DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99

Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D   +  GL  +     ++  +    +   +  Q        V   K  +LT RE
Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVQQGGT-----VTGSKAEQLTARE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E    ++ G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|288919771|ref|ZP_06414097.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288348871|gb|EFC83122.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 135

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +R+ A  Y ++ 
Sbjct: 75  LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 132


>gi|75812776|ref|YP_320393.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705532|gb|ABA25204.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 209

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+  L  +++G ++ EIA  L I   TV +++  I+ K     R+ A+  AV+
Sbjct: 144 NPELSERELAVLRSLAQGMSNAEIAAALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVK 203

Query: 243 NNIV 246
             IV
Sbjct: 204 RGIV 207


>gi|300790264|ref|YP_003770555.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799778|gb|ADJ50153.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 206

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +   L+ REVE L  +++G T+ +I   L IS  TV  ++  +  K     R+ A+
Sbjct: 137 VRNPEPQPLSAREVEVLRLVAKGGTNADIGRALHISEATVKTHLLRVFGKLGVSDRTAAV 196

Query: 238 AYAVRNNIV 246
             A+  N++
Sbjct: 197 TTAMARNLL 205


>gi|290958642|ref|YP_003489824.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648168|emb|CBG71276.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 49/123 (39%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++  G+ ++     ++       +    +      +         
Sbjct: 96  RAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLVQAPRPSAATQLAY 155

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE E L  I++G ++ EIA  L ++ +T+  +++ ++ K   + R+ A  +A   
Sbjct: 156 GELTDRETEVLVLIAQGLSNSEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEA 215

Query: 244 NIV 246
            +V
Sbjct: 216 RLV 218


>gi|310287962|ref|YP_003939221.1| response regulator of two-component system [Bifidobacterium bifidum
           S17]
 gi|309251899|gb|ADO53647.1| response regulator of two-component system [Bifidobacterium bifidum
           S17]
          Length = 277

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +  +        Y + T     + I  +    +G  +   +L    +L+A+Q        
Sbjct: 148 DVGSVIRAGARGYVTKTITGDDL-ISSIKQVHEGYAVFSPKLAGF-VLSAFQGAPMDGAG 205

Query: 178 VHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              G+D EL   +GRE E +  I+ G T  E+A  L IS  TV  ++++++RK     R+
Sbjct: 206 GERGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETHMSNVLRKLQLSNRT 265

Query: 235 GAIAYAVRNNIV 246
               +A    IV
Sbjct: 266 ELTRWAADRRIV 277


>gi|300784675|ref|YP_003764966.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794189|gb|ADJ44564.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ +IA  L +S  TV  ++  I  K     RS A+  A    +
Sbjct: 151 LTRREAEVLRLIATGLSNQDIAAALVVSLETVKTHVGHIFTKLGAGNRSQAVVIAYEAGV 210

Query: 246 V 246
           V
Sbjct: 211 V 211


>gi|256374666|ref|YP_003098326.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255918969|gb|ACU34480.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 209

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  +  G ++ EI   L I   TV  ++  +  K     R+ A+  A+R  +
Sbjct: 147 LSPREVEVLRLVGRGLSNAEIGRQLFIGEATVKTHLLRVFSKLDVSDRTAAVTTAMRLGL 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|16331237|ref|NP_441965.1| response regulator like-protein [Synechocystis sp. PCC 6803]
 gi|1001413|dbj|BAA10035.1| response regulator like protein [Synechocystis sp. PCC 6803]
          Length = 89

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 39/63 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE+E L  ++ G T+ E++  L IS+ TV+N++++I+ KT T+ R   + +A+
Sbjct: 8   PPASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWAL 67

Query: 242 RNN 244
           +  
Sbjct: 68  QWG 70


>gi|332280465|ref|ZP_08392878.1| transcriptional regulator [Shigella sp. D9]
 gi|332102817|gb|EGJ06163.1| transcriptional regulator [Shigella sp. D9]
          Length = 158

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 84  EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 143

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 144 IELIKTALRMGV 155


>gi|302522019|ref|ZP_07274361.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302430914|gb|EFL02730.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 150

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDE 205
           LF   R     R      +A+      ++           L+ RE E L  ++ G ++ E
Sbjct: 43  LFAAVRATADGRSVLAPAVASRLVTSLRAPGADETPPRTPLSAREREVLALVARGTSNRE 102

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  TV  ++  +  K     R+ A+A      I+
Sbjct: 103 IARALFLSEATVKTHLTHLYAKLGVTDRAAAVATGYERGIL 143


>gi|295695702|ref|YP_003588940.1| GAF modulated transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295411304|gb|ADG05796.1| GAF modulated transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 511

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 49/106 (46%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           + G      +G +   D +      A        +  V       LT RE + L +I++G
Sbjct: 405 QDGTPFQADEGTLFALDTMMSRAAKAMSARLAEPATKVGIPSSGVLTPREQQILQFIADG 464

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + EI+  L +S  TV+ Y+ +I+R+     RS A+A A+R NI+
Sbjct: 465 LDTKEISQHLHLSEYTVSEYVRAILRRLQVPNRSAAVAKAMRQNII 510


>gi|172039086|ref|YP_001805587.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700540|gb|ACB53521.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 265

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 36/78 (46%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +    +    H  +   LT RE + L  I  G  + +IA  L I+  TV  ++ +I+ K 
Sbjct: 187 ETTCIEEDPQHLFEISPLTDREFDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKL 246

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A   A+R+ +V
Sbjct: 247 CVDDRTQAAVRALRSGLV 264


>gi|319761227|ref|YP_004125164.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317115788|gb|ADU98276.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 224

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             +   V     +           Y   T D   +   +        ++  + + +  L+
Sbjct: 81  RVIMLTVSEDGEDLGAALRHGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGK--LV 138

Query: 166 AAYQAN----MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           AA+Q+                  +L+ RE E L  I+ G ++ EIA  L I+  TV  ++
Sbjct: 139 AAFQSQGAPEPDPGPMPPDDPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHV 198

Query: 222 ASIMRKTATKTRSGAIAYA 240
             I+RK    +R  A  YA
Sbjct: 199 QHILRKLGLTSRVQAAVYA 217


>gi|289664500|ref|ZP_06486081.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 267

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 154 ILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVIL 210
           +   +L    LLA A+QA   +  D    +     LT RE ECL + ++G TS  IA  L
Sbjct: 170 LAEAQLLPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKNIAAAL 229

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             S  TVN ++ S  RK   + R  A+   +   ++
Sbjct: 230 NRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 265


>gi|229542987|ref|ZP_04432047.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
 gi|229327407|gb|EEN93082.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
          Length = 511

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 42/73 (57%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
             +D    +  +L+ RE+  L  +++G ++ E A +L +S  TV +Y++S+M++   + R
Sbjct: 438 NQWDEKQPELVQLSAREIHILQLLADGASTTEAAEMLHLSEYTVRDYVSSLMKRLHARNR 497

Query: 234 SGAIAYAVRNNIV 246
           + A   A+R  ++
Sbjct: 498 TEAAVKAMRLGLI 510


>gi|218288243|ref|ZP_03492542.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241602|gb|EED08775.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 224

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +++G T+ E+A  L IS  TV  +   IMR+    +R+  + YA +N +
Sbjct: 150 LSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQHIMRRIGLHSRAALVRYAYQNGL 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|207723944|ref|YP_002254342.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2]
 gi|206589151|emb|CAQ36113.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2]
          Length = 252

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 24/189 (12%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D IV+ D+P + +  +          +++R      PV+    +   P A +D  + +
Sbjct: 52  LMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAAAPAAEIDRGWLA 108

Query: 133 ------LTFDVARI----------RIGLMLLFPKGRIILRDRLWEIG-----LLAAYQAN 171
                 L   VA                  L       L   L ++       L    A+
Sbjct: 109 KFIAYDLRNAVADGVYDEGHCIGTYFSFHRLASVNEPFLASVLRDLTPVLHRTLMRAVAD 168

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K++         L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT   
Sbjct: 169 TEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 228

Query: 232 TRSGAIAYA 240
            R G    A
Sbjct: 229 NRVGVAVLA 237


>gi|307155198|ref|YP_003890582.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306985426|gb|ADN17307.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 248

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT RE++ L  I  G  + +IA  L I+  TV  ++ +I+ K     R+ A   A+
Sbjct: 183 ENDPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRNILNKLCVNDRTQAAVRAL 242

Query: 242 RNNIV 246
           R+ +V
Sbjct: 243 RSGLV 247


>gi|116073982|ref|ZP_01471244.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069287|gb|EAU75039.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 249

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 17/190 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +Q++  +V SD          L EK +    L     +F        +         + Y
Sbjct: 62  QQQMPDLVISDVMMPRCDGYGLLEKMRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 121

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRD--------------RLWEIGLLAAYQANMFKSY 176
               FD   +   +  +  +   +L +              ++ EI  +    A+   S 
Sbjct: 122 IPKPFDPDELVARVRNVVRRQDRLLTEAARFADADVGQMAKQISEIRSMLTGSADAAASP 181

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D         T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  
Sbjct: 182 DT---PQLSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTEL 238

Query: 237 IAYAVRNNIV 246
           + +A+++++V
Sbjct: 239 VRFALQHHLV 248


>gi|71737969|ref|YP_274134.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257484378|ref|ZP_05638419.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289627275|ref|ZP_06460229.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289650435|ref|ZP_06481778.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298486449|ref|ZP_07004509.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71558522|gb|AAZ37733.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298158926|gb|EFH99986.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320324828|gb|EFW80900.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320329194|gb|EFW85191.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330869470|gb|EGH04179.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330989303|gb|EGH87406.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331013208|gb|EGH93264.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 222

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144
            M +        +LQ+       V  T+ ++        +     Y         +  GL
Sbjct: 59  RMPVLNGLGAARILQQRMPDLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIAGL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         + A     M +           LT RE + L  ++ G ++ 
Sbjct: 119 QRVARGEEALNST------VSARLLRRMTERNTSGAALPESLTPRERQVLGLVAGGFSNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|325271203|ref|ZP_08137751.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324103661|gb|EGC00960.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 235

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 13/180 (7%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYC 131
           S++P + +      +  K         +   PV  T                 G+ + + 
Sbjct: 56  SNYPDEWISRYQRDDFYKQDCAAHLSHQSTLPVLWTDELYHEAPHFREAACQHGLRHGWT 115

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFEL 186
               D+      + +  P G I + +   + G +      +      H          ++
Sbjct: 116 QSLHDLQHNESQISVARPAGSIDINELYEKAGSVQWLCHTLHAVLGEHHLNALCPPQPKM 175

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A     +
Sbjct: 176 SARELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|229820223|ref|YP_002881749.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566136|gb|ACQ79987.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 224

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++A + +   +  D H   D +LT RE E ++ +++G +++EI   L +S  T   +++ 
Sbjct: 143 VIAEFTSRSPRPLDPHPHID-QLTNREHEVVSLVAQGLSNEEIGKRLYVSPATARTHVSH 201

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
            M K + + R+  + +A ++ +
Sbjct: 202 AMLKLSARDRAQLVVFAFQSGL 223


>gi|21219768|ref|NP_625547.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289773037|ref|ZP_06532415.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|9368908|emb|CAB99140.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289703236|gb|EFD70665.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 220

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 4/194 (2%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +        L ++ + D +V+ D    L+  +  +       V   P  L    
Sbjct: 28  IEVVGEAADGAAVVPLVRQVRPD-VVAMDVRMPLLDGIEATRALLR-TVADPPKILVVTT 85

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F              + +       A I   + L+     ++    + ++   A Y    
Sbjct: 86  FENDEYVYEALRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRQLA--AEYGDGG 143

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE E L  ++ G ++ EIA  L +   TV +++++++ K   + 
Sbjct: 144 GNRAARAELARARLTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARD 203

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+  A  +  V
Sbjct: 204 RTQAVITAYESGFV 217


>gi|241764600|ref|ZP_04762616.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241365963|gb|EER60589.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 263

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+ +A    +
Sbjct: 203 LSAREKEILRMVASGYTSTEIGSRLLISCMTVNTHIRNIYRKLQVRTRAQAVRFASLRGL 262


>gi|258654718|ref|YP_003203874.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258557943|gb|ACV80885.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 207

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   ++L  R    G  A       +  +        L+ RE+E L  ++ G+++
Sbjct: 103 LLKGAPPDELLLAVRSAAAGESALAPPIASRLLERLRTPQTSLSPREIEVLERVAAGRSN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I+  TV +++  I  K    +R+ A++ A    I+
Sbjct: 163 GEIARELVITEQTVKSHLVHIYTKLGVSSRTAAVSLARERGIL 205


>gi|229179482|ref|ZP_04306835.1| Two-component protein Kinase [Bacillus cereus 172560W]
 gi|228603983|gb|EEK61451.1| Two-component protein Kinase [Bacillus cereus 172560W]
          Length = 592

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       + +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 407 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 463

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 ETPESKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQRALEIGII 591


>gi|330873485|gb|EGH07634.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 77

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + 
Sbjct: 16  NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75


>gi|310639866|ref|YP_003944624.1| transcriptional regulatory protein degu (protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
 gi|309244816|gb|ADO54383.1| Transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
          Length = 217

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 13/135 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP-KGRIILRDRLWEIGLLAAYQAN 171
           F  +    +        +  L   +  +  G   L+P   + ++ + L +I         
Sbjct: 92  FRAIQAGASGYILKSAPHEELLAAIQSVAEGSAYLYPNATKRLMSEYLDKIKQEGI---- 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    G    L+ RE E L+W+++G  + EIA  L IS  TV ++ +++M K   K
Sbjct: 148 --------AGPYESLSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLNLK 199

Query: 232 TRSGAIAYAVRNNIV 246
           TR   + +A++  ++
Sbjct: 200 TRPELVKFALKKGLL 214


>gi|296167213|ref|ZP_06849619.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897454|gb|EFG77054.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 238

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 35/207 (16%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--GMDNRYCS 132
           D +  + WP +LV  +  +    +   +                     A  G  +RY +
Sbjct: 31  DRLEDAQWPMELVFMVEAALALSHREAVHALRPFLARYAGKNLVAGQFVALFGSADRYLA 90

Query: 133 LTFDVARIRIGLMLLFPKGRIILR---------DRLWEIGLLAAYQANMFKSYDVHWGK- 182
               +     G    F     + R         + L    L AA      +S        
Sbjct: 91  RIAALCGDGAGAERHFAAALAMDRRMGSVVHINETLARRALFAASLGQDARSLAEEARAA 150

Query: 183 -----------------------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
                                     LT REVE L  ++EG ++  I   L IS NT  N
Sbjct: 151 AGAIGQARVVDLVDPLLTPGPVGPDGLTEREVEVLRLLAEGLSNRAIGERLFISTNTAAN 210

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +I+ KT    R+ A  YA  + ++
Sbjct: 211 HVRNILVKTGAANRTQAAMYAADHELL 237


>gi|290955466|ref|YP_003486648.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260644992|emb|CBG68078.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 342

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 52/110 (47%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
                  L LL+P G    R  +    L +A        ++      + L+ RE+E LT 
Sbjct: 216 ADSGGTRLRLLWPVGPDWHRVTVRRHTLGSAVVRRAVLVHETPAPLPYGLSPRELEVLTR 275

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + G T+  IA  L +S  TV+ ++  ++RKT   +R+ A A AVR+ ++
Sbjct: 276 AATGMTNQAIAQALFLSPRTVHTHVEHLLRKTGAASRAEATALAVRDGLL 325


>gi|86605629|ref|YP_474392.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554171|gb|ABC99129.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-3-3Ab]
          Length = 223

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V SD     +       + +     +    +F      L + +       + Y    F
Sbjct: 47  DVVVSDVVMPEMDGFEFCRQLRQQRGGELVPFIFLSSRSELDDRVQGYEWGADDYIIKPF 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +  +     R +L  + L+        ++       D  LT  E     
Sbjct: 107 EPLEL---VAKIEAQIERARRTQLEILRLIQQQTQAKAEAAPRPTLADLPLTPAEERVFR 163

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G T+ +I   L IS  TV  ++ +I+ K + + RS  + +A     +
Sbjct: 164 EVIRGLTNKQIGEKLFISPRTVQTHLTNILSKLSLENRSQLVRFAYERGYI 214


>gi|328885463|emb|CCA58702.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 222

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 6/160 (3%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLML 146
           +   E  +     +R   +   +  T   +      +    + +     +   +   + +
Sbjct: 60  LDGLEATRRITADERLEGVRVVILTTFDADDHVYGALRAGASGFLVKDTEPMELLHAVRV 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     +I         L+A +     +  D     +  LT RE E L  +  G ++DEI
Sbjct: 120 VARGDALIAPAVTRR--LIAEFAGRAERRPDPSPRLN-ALTEREREVLGLVGAGLSNDEI 176

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +S  T   +++ IM K A + R+  +  A  + ++
Sbjct: 177 AGRLVLSPATAKTHVSRIMTKLAVRDRAQLVILAYESGMI 216


>gi|313109354|ref|ZP_07795317.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310881819|gb|EFQ40413.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 875

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 9/137 (6%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLLAAYQANM- 172
            +    G +    +         +G     L  L  +    LR++L         Q    
Sbjct: 738 ALHLEQGREREALATLQQAMEGAVGGALLPLHELLVQQPEWLREQLQRFPACPGAQRMRA 797

Query: 173 ---FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                  +        L+GRE+  L  I++G ++ EI+  L IS +TV ++   I  K  
Sbjct: 798 LLPEPPAEPAGSAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLG 857

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R+ A+A A    ++
Sbjct: 858 VERRTQAVARAKHMGLL 874


>gi|229818603|ref|YP_002880129.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564516|gb|ACQ78367.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 221

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  + +            +    F              + +     
Sbjct: 49  DVVLMDIRMPKLDGLEATRRIVADPRASGAHIVVVTTFELDEYVAEAIRAGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   + +      ++          L A  A   ++     G D  LT RE E L 
Sbjct: 109 EPAELVRAVRVAAAGDALLSPTVTRR---LLAQVAESTRAVKAVPGLD-HLTDREREVLV 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG ++DEIA  L +S +TV  +++  M K A + R+  +  A  + +V
Sbjct: 165 TVAEGLSNDEIAAKLFLSPSTVKTHVSRTMTKLAARDRAQLVVAAYESGLV 215


>gi|225022047|ref|ZP_03711239.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945168|gb|EEG26377.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 212

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ EI   L +S  TV +++  I  K   ++R+ A+A A +  +
Sbjct: 152 LTPRELEVLKLVASGSSNREIGRTLLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGV 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|190574796|ref|YP_001972641.1| putative two-component system response regulator transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
 gi|190012718|emb|CAQ46347.1| putative two-component system response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 217

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE E L  ++ G ++  I   + IS  TV  ++ S+M K     R+ A+  A+R
Sbjct: 146 EDRLSPRETEVLRHVAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALR 205

Query: 243 NNIV 246
             I+
Sbjct: 206 RGII 209


>gi|330895505|gb|EGH27816.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330981863|gb|EGH79966.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 77

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + 
Sbjct: 16  NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75


>gi|229542625|ref|ZP_04431685.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229327045|gb|EEN92720.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 218

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 12/167 (7%)

Query: 79  SSDWPFDL-VRCMALSEKDKY-----YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
             + P D+ +  + + E +                +    F      +         Y  
Sbjct: 45  CRNQPVDIALLDVRMPEMNGVEAAKIIAAQTSAKPMILTTFDDDEYIVDALRNGARGYLL 104

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              D  +IR  +  ++    I     L +I    +  +       +   K    T RE E
Sbjct: 105 KNNDPEKIRDAIKSVYNGNSIFQDAVLDKIK---SNLSGREPEPKIDLKK---FTERERE 158

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ++ I++G ++ EIA  L IS  TV NYI SI  KT  + R+    Y
Sbjct: 159 IMSLIAKGFSNKEIAKTLYISEGTVANYITSIFGKTGLEHRTQIAVY 205


>gi|331698378|ref|YP_004334617.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953067|gb|AEA26764.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 212

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 12/147 (8%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
                P  L    F T  + +         Y         +   +   +    ++     
Sbjct: 76  RSGSAPRVLVLTTFDTDRDVLPAIEAGATGYLLKDTPRDELLRAVRAAYRGEAVLSPAVA 135

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             +               V    +  L+ RE+E L  ++ G T+ E A  L IS  T+  
Sbjct: 136 GRLM------------GQVRTPTEEALSSRELEVLQLVAAGATNREAARRLFISEATIKT 183

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  I  K   + R+ A++ A R  ++
Sbjct: 184 HLLHIYAKLEVRDRASAVSAAYRRGLL 210


>gi|302525941|ref|ZP_07278283.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434836|gb|EFL06652.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 214

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  +E      V   P  +    F              + +     
Sbjct: 50  DVVLMDVRMPAVDGIRATE-HLLSTVEDPPKVIVVTTFENDDYVYDALLAGASGFLLKRA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               I  G+  +     ++    +  +           +S       DF LT RE + L 
Sbjct: 109 RPEEIVAGIRTVLAGDSLLFPAAIRGMAA--------RRSPGAAAPLDF-LTERERDVLR 159

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 160 LMAAGLSNGEIAAELYLGLQTVKTHVGNVLSKLGARDRTQAVIRAYESGFV 210


>gi|294630526|ref|ZP_06709086.1| response regulator, two-component system [Streptomyces sp. e14]
 gi|292833859|gb|EFF92208.1| response regulator, two-component system [Streptomyces sp. e14]
          Length = 224

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 50/123 (40%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++  G+ ++     ++       +    A  +   +         
Sbjct: 99  RAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFAKLSGPARPPAAAQAAY 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I++G ++ EI+  L ++ +TV  +++ ++ K   + R+ A  +A   
Sbjct: 159 GDLTERETEVLVLIAQGLSNGEISERLVVAESTVKTHVSRVLVKLGLRDRTQAAVFAYEA 218

Query: 244 NIV 246
            +V
Sbjct: 219 RLV 221


>gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 231

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 22/215 (10%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           A+ EY+  S F +      +E     ++  + P  ++  + + + D Y     +   P  
Sbjct: 17  AVKEYLQESGFGVRVASNAREGW--ELIQQNTPDLVISDVMMPQVDGYQFLKQLRDDPRF 74

Query: 108 LFCPVFHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGR-----IILRD 157
              PV     + +T           + Y    FD   +   +  L  K       +    
Sbjct: 75  ASLPVIFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELIAIINNLLEKRVTQTTVVGEDS 134

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTWISEGKTSDEIAVIL 210
              EI  LA   A +        G          +LT RE   L  +++G  + EIA  L
Sbjct: 135 ENIEIAKLAHEIAKIKDLLSPKIGISQTPPPFAIDLTPREQSVLNLVAQGLMNKEIARKL 194

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             S   V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 195 ETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|182415168|ref|YP_001820234.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842382|gb|ACB76634.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 238

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 11/171 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           S+V  DW       +      +     +            + E +   A     Y   T 
Sbjct: 56  SVVVLDWMLSGRSGLGFVRDIRIDPPPRVLVFSAITSALAVREAL---AAGAKGYLEKTA 112

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                ++ L  +      +       +   A           +  G    LT RE E L 
Sbjct: 113 PFDEFKMALRSVAAGREYLGASAKRLLQQEAHAA--------MRLGAGPALTNREREVLR 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++EG  S EIA  L +S  TV N+ A+I+++T  ++ +  + YA R  ++
Sbjct: 165 YVAEGLGSKEIADRLALSTRTVENHRANILKRTGLRSVAQLVLYAARLGLI 215


>gi|72162216|ref|YP_289873.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71915948|gb|AAZ55850.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 236

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 51/160 (31%), Gaps = 8/160 (5%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR  A         V+   +      F  L          D+    L   V  +  G   
Sbjct: 70  VRQWAADSGQTVQVVVVASSVAEGTAFEVLQAGARGLLLRDSSPEELVRAVREVARGNAA 129

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L P+    L DR                       +   LT RE E L  +  G T+ EI
Sbjct: 130 LCPQVTARLLDR--------LAALPAAPQASGPAAEVARLTRREREVLRLLGRGLTNAEI 181

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +   TV  ++  ++ K   + R  A+ Y   + +V
Sbjct: 182 ARQLVLGETTVKTHVGRVLAKLGLRDRVQAVVYTYEHGLV 221


>gi|256786173|ref|ZP_05524604.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289770068|ref|ZP_06529446.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700267|gb|EFD67696.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 226

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 3/157 (1%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLMLLFPK 150
           L   +    + +   E+   V  T  ++ +    +       LT +  R  I   +L   
Sbjct: 69  LDGIETTRRLTEEHPEVAVVVLTTFADDESILGALGAGARGYLTKNAGRQDITRAILAAG 128

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAV 208
               + DR  +  LLA  +     +      +    +LT RE E L  I +G ++  IA 
Sbjct: 129 AGQSVLDREVQNRLLATARTKAAPAPGDAARQPLPDDLTPREREVLALIGQGLSNRGIAE 188

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L IS  TV  +I ++  K   + R+ A+  A+   +
Sbjct: 189 KLFISEATVKTHINNLFAKAHIRDRADAVRRAIGAGL 225


>gi|325961668|ref|YP_004239574.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467755|gb|ADX71440.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 416

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  +    D+ L  RE+E L  ++ G+ +  IA  L IS NTV  ++ ++ RK    +R
Sbjct: 344 PARPLAEAADWNLGERELEVLQLLAAGQRNRSIAAKLHISENTVKFHLRNLYRKIGASSR 403

Query: 234 SGAIAYAVRNNI 245
           + A+A A  N +
Sbjct: 404 TEAMALAHSNGL 415


>gi|298250029|ref|ZP_06973833.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297548033|gb|EFH81900.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 855

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 42/88 (47%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            L  +    A         D       +L+ RE+E L  +S+G ++ +IA  L IS  TV
Sbjct: 767 NLPLVEAFTARHRGQPVPQDSPMAHSTDLSQRELEVLHLLSQGLSNKQIAAQLVISPRTV 826

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + ++ SI  K A  +R+    YA+ +++
Sbjct: 827 DAHVRSIYNKLALNSRAAVARYALEHHL 854


>gi|284041315|ref|YP_003391245.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283820608|gb|ADB42446.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 219

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 15/168 (8%)

Query: 84  FDLVRCMALSEKDKYY--NVLQRPTELFCPVFHTLPENITPPAGMD-NRYCSLTFDVARI 140
            DL    ++S  D       L    ++        PE+I+    M  + Y S   DV  I
Sbjct: 62  ADLRMPGSMSGLDFTAQLRSLSPTVKVLILSMSIAPEDISAAIRMGVSGYLSKNQDVHDI 121

Query: 141 RIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWIS 198
           R  ++ +    R    ++ L              +S D    ++  +LT RE+E L  I+
Sbjct: 122 RKAILEIMRDNRPYYSQEILQSFA----------ESVDRQPVEEIRQLTPRELEILKLIA 171

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  T+ EIA  L IS  TV+ +  ++++K   K+  G   +A+R+ +V
Sbjct: 172 QEFTTGEIANQLFISEATVDTHRRNMIQKLRAKSIVGLANFAIRHGLV 219


>gi|284032205|ref|YP_003382136.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811498|gb|ADB33337.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 221

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 157 DRLWEIGLLAAYQAN-MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISR 214
           D L   G+     A    +S   H  K+ + LT RE E +  + EG ++DEIA  L +S 
Sbjct: 124 DALLSPGVTRRLVAEFATRSRQPHASKELDVLTEREREIVALVGEGLSNDEIAARLVLSP 183

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T   +++  M K   + R+  +  A +  +V
Sbjct: 184 ATAKTHVSRAMVKLGVRDRAQLVVVAYQTGLV 215


>gi|77919001|ref|YP_356816.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545084|gb|ABA88646.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM
           2380]
          Length = 214

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A  ++      G +  LT  E++ L  I+EGKT++EIA I  +S  T+  ++  I +K  
Sbjct: 138 AVKWRQRQDDGGAEHNLTKTEIKVLKHIAEGKTNNEIAQIQFVSIETIKTHVQRIFKKLE 197

Query: 230 TKTRSGAIAYAVRNNIV 246
              R  A+A A + NI+
Sbjct: 198 VGNRMEAVAVARKKNII 214


>gi|311895697|dbj|BAJ28105.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 1/148 (0%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
             VL     L    F      +         +         +   +  +   G  ++  R
Sbjct: 72  ARVLPDCRVLALSTFDLDEYVVAALRAGACGFLPKDVSPEELGAAIRTV-HTGEAVVAPR 130

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L    +    +     +         +LT RE E    I+ G  +D IA  L +SR+TV 
Sbjct: 131 LLTRLISTYVRTPATPAVPRPAPAPADLTPRETEVWRLIATGLDNDAIAAALDLSRSTVK 190

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N+I ++  K   + R+ A+  A  + +V
Sbjct: 191 NHITALFAKLDVRDRAQAVIAAYESGLV 218


>gi|288924538|ref|ZP_06418483.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288344115|gb|EFC78699.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 214

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +R+ A  Y ++ 
Sbjct: 155 LNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 212


>gi|291298613|ref|YP_003509891.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567833|gb|ADD40798.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 207

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +      G    LT RE++ L  +SEGK++ EI   L +S +T+  +   + RK   + R
Sbjct: 134 RRVPTQRGGPVGLTEREMQVLRGMSEGKSNAEIGRDLFVSEDTIKTHARRLFRKLGARDR 193

Query: 234 SGAIAYAVRNNIV 246
           + A+A   R  IV
Sbjct: 194 AHAVAEGFRGGIV 206


>gi|228918188|ref|ZP_04081692.1| Response regulator receiver [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841468|gb|EEM86607.1| Response regulator receiver [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 592

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 9/145 (6%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWE 161
              L    F +            + Y   + D   +   + L++  G +I  D   R+WE
Sbjct: 453 MRVLILSTFQSTERAKEIIRNGADGYLLKSIDSRELAESIRLVYRGGTMINHDLFHRMWE 512

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
                    +         G ++ LT RE+E L  +S+G     IA  L +S  TV NY 
Sbjct: 513 DKEETGLVESRLD------GIEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYA 566

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           +++  K   K R  A+  A    ++
Sbjct: 567 SNLYEKLGVKNREEAVQKAKDKGLL 591


>gi|166713294|ref|ZP_02244501.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 826

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 21/199 (10%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A  F L RW     +   ++V        +    L+  + ++    R            P
Sbjct: 625 AMGFALARWHRLAGRSSAALVILGQ----IEQACLANDNAWHLARTRARIALVLQQRGEP 680

Query: 118 ENITPPAGMDNRYCSLT----------FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
               P       + +LT               +   L    P         L    LL  
Sbjct: 681 LAALPYLYSALEHVALTQSWQSIVELGLPAKAMLRSLRQHDPHTVGGSTRALTIQALLER 740

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              +   + D+        + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK
Sbjct: 741 LSGDDDPAGDI-------FSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRK 793

Query: 228 TATKTRSGAIAYAVRNNIV 246
              ++R  A+A AV+  ++
Sbjct: 794 LDARSRESALAQAVQRGLL 812


>gi|123965417|ref|YP_001010498.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9515]
 gi|123199783|gb|ABM71391.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9515]
          Length = 92

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 41/63 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+ +
Sbjct: 14  MGLSSREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDH 73

Query: 244 NIV 246
             +
Sbjct: 74  GKI 76


>gi|254248175|ref|ZP_04941495.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124874676|gb|EAY64666.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 347

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 61/177 (34%), Gaps = 7/177 (3%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           L     L  + +   IV +D         A      Y      P +   P      +  T
Sbjct: 159 LYAEAALSLDTRAALIVGADGTIRWQSPQAARHIAAYTTAHDAPADARQPTTARDTDAPT 218

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--- 178
               +   +      +AR   G  +       I R      G        + K  D    
Sbjct: 219 QLPALLRTWFVDW--LARGAPGDAVHEFSSGPIRRSASATRGPEPGEWIVILKERDDTVH 276

Query: 179 --HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                + F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR
Sbjct: 277 CNALAERFGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 333


>gi|256395183|ref|YP_003116747.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361409|gb|ACU74906.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +  +        L     L    F              + +     + A +  GL  + 
Sbjct: 62  GLEATRLITADEKLSGVRILILTTFELDEYVFEAIRAGASGFLLKDTEPADLLRGLRAVA 121

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIA 207
               ++         L+A +     ++      +  + LT RE E L  ++ G +++EIA
Sbjct: 122 AGEALLAPSVTRR--LIAEFAVRSKRTGPNPAAEQIKALTEREREVLALVAAGLSNEEIA 179

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L +S  T   +++  M K   + R+  +  A  + +
Sbjct: 180 DRLVLSPLTAKTHVSRSMVKLGARDRAQLVVLAYESGL 217


>gi|258650774|ref|YP_003199930.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553999|gb|ACV76941.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 230

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 7/163 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIG 143
           VR       +    +  +  ++   V  T  E+             +   T     +   
Sbjct: 61  VRMPGGGGIEATRRLAAQSPQVRVIVLTTFDEDAAIDGALRLGAAGFLLKTSPPEMLLDA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  +    +    ++A Y A           +   LT RE E L  ++ G  +
Sbjct: 121 IRRVAAGGGQLDP--MVVPRVIAGYAAA--PRMGERAPELDRLTPRETEVLQLVARGHNN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA +L +   TV  ++  ++ K   + R+ AIA+A  + +V
Sbjct: 177 AEIAALLHLGETTVKTHLGRVLDKLGLRDRNKAIAFAYDSGLV 219


>gi|16331883|ref|NP_442611.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1001802|dbj|BAA10682.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 209

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L  +++G ++ +IA  L I   TV +++  I+ K     R+ A+  AV+
Sbjct: 144 NPELSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVK 203

Query: 243 NNIV 246
             IV
Sbjct: 204 RGIV 207


>gi|320322629|gb|EFW78722.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 77

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + 
Sbjct: 16  NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75

Query: 245 I 245
           +
Sbjct: 76  V 76


>gi|317126112|ref|YP_004100224.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590200|gb|ADU49497.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 217

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 10/161 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR   +S  +    + Q    +   +     +      G++          A  R     
Sbjct: 59  VRLPGMSGIEATRRIAQDHPGIKVLIVTAYDDEEFVRRGLEAGAVGFISKAAPGR----E 114

Query: 147 LFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L    R     RL  +  LLA        + D        LT RE + L+ + +G  + E
Sbjct: 115 LATGVRDAAAGRLVLQSQLLARVLRPRGPAND-----GVMLTDRERQVLSLLVDGLHNRE 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS  TV  +  S+  K    +R+ A+  A+ + I+
Sbjct: 170 IADRLHISSRTVERHCDSLYGKLGAGSRTEAVVKALSHGII 210


>gi|297196575|ref|ZP_06913973.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297153289|gb|EDY67145.2| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|302607736|emb|CBW45649.1| response regulator [Streptomyces pristinaespiralis]
          Length = 249

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +LTGRE + L  ++ G ++ EIA  L +S +TV  ++ +++ K   + R     YA 
Sbjct: 185 PPEQLTGRECQILDLVARGLSNTEIAQSLTLSEHTVKTHVQNLLNKLRLRNRVHVAIYAF 244

Query: 242 RNNI 245
              +
Sbjct: 245 ETGL 248


>gi|296119236|ref|ZP_06837805.1| two-component system response regulator [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967757|gb|EFG81013.1| two-component system response regulator [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 212

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L++  A+   +          LT RE+E L  ++ G ++ EI   L +S  TV +++ 
Sbjct: 131 SALSSMVADRLMTR--VRTPRSSLTPRELEVLQLVAGGSSNREIGQELMLSEATVKSHLV 188

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K   ++R+ A+A A    ++
Sbjct: 189 HIYDKLGVRSRTSAVAAAREQGVL 212


>gi|256789144|ref|ZP_05527575.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 216

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 4/194 (2%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +        L ++ + D +V+ D    L+  +  +       V   P  L    
Sbjct: 24  IEVVGEAADGAAVVPLVRQVRPD-VVAMDVRMPLLDGIEATRALLR-TVADPPKILVVTT 81

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F              + +       A I   + L+     ++    + ++   A Y    
Sbjct: 82  FENDEYVYEALRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRQLA--AEYGDGG 139

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE E L  ++ G ++ EIA  L +   TV +++++++ K   + 
Sbjct: 140 GNRAARAELARARLTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARD 199

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+  A  +  V
Sbjct: 200 RTQAVITAYESGFV 213


>gi|315646683|ref|ZP_07899799.1| two-component response regulator yhcZ [Paenibacillus vortex V453]
 gi|315277889|gb|EFU41212.1| two-component response regulator yhcZ [Paenibacillus vortex V453]
          Length = 213

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +  +R+    +     A++    +   G D  LT RE   L  I+ G+++ EIAV L I
Sbjct: 119 AVNGNRMLHPQVTNQLIAHVATDGEAAKGIDI-LTKREQHVLEQITMGRSNKEIAVELHI 177

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +  TV  +I  I+ K   + R+ A  YA+RN+
Sbjct: 178 TEKTVKTHITHILGKMEVQDRTQAALYAIRNH 209


>gi|240014094|ref|ZP_04721007.1| NarL/NarP [Neisseria gonorrhoeae DGI18]
 gi|240016529|ref|ZP_04723069.1| NarL/NarP [Neisseria gonorrhoeae FA6140]
 gi|240115736|ref|ZP_04729798.1| NarL/NarP [Neisseria gonorrhoeae PID18]
 gi|240118032|ref|ZP_04732094.1| NarL/NarP [Neisseria gonorrhoeae PID1]
 gi|240121656|ref|ZP_04734618.1| NarL/NarP [Neisseria gonorrhoeae PID24-1]
 gi|268601415|ref|ZP_06135582.1| two-component system response regulator [Neisseria gonorrhoeae
           PID18]
 gi|268603746|ref|ZP_06137913.1| two-component system response regulator [Neisseria gonorrhoeae
           PID1]
 gi|268585546|gb|EEZ50222.1| two-component system response regulator [Neisseria gonorrhoeae
           PID18]
 gi|268587877|gb|EEZ52553.1| two-component system response regulator [Neisseria gonorrhoeae
           PID1]
          Length = 218

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 79/223 (35%), Gaps = 20/223 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +  ++I +D    +   + AL     G          L   + +  +     P  ++  +
Sbjct: 1   MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL----QPDVVLLDL 56

Query: 91  ALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +   +    + Q      +   +   V     +           Y     +   +   +
Sbjct: 57  DMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLAECMRIGARGYLLKNINADFLLESI 116

Query: 145 MLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                   +   +   ++   L++   A   ++          LT RE+E L +++ G +
Sbjct: 117 RKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSS-------LTPRELEILGYLAAGHS 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 170 NKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|269836188|ref|YP_003318416.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785451|gb|ACZ37594.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 216

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 165 LAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT-SDEIAVILGISRNTVNNYI 221
           LA    N F        +    ELT RE E L  + +G T + ++A  L +S NTV  ++
Sbjct: 127 LARKVLNEFARPAAPRPERTAEELTEREREVLELLVQGVTSNKDLADRLFVSENTVKYHL 186

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I+ K   + R+  IAYA+R+ +V
Sbjct: 187 RNILNKLHLQNRAQVIAYALRHGLV 211


>gi|316985109|gb|EFV64062.1| transcriptional regulatory protein degU [Neisseria meningitidis
           H44/76]
 gi|325200119|gb|ADY95574.1| transcriptional regulatory protein degU [Neisseria meningitidis
           H44/76]
          Length = 218

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 76/222 (34%), Gaps = 18/222 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +  ++I +D    +   + AL     G          L   + +  +     P  ++  +
Sbjct: 1   MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL----QPDVVLLDL 56

Query: 91  ALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +   +    + Q      +   +   V     +           Y     +   +   +
Sbjct: 57  DMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLTECIRIGARGYLLKNINADFLLESI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
                   +   +      + A    ++         +    LT RE+E L +++ G ++
Sbjct: 117 RKAAEGDNVFSPE------MTAKLVKSLISPQPAQGTQALSSLTPRELEILGYLAAGHSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 171 KIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|300787361|ref|YP_003767652.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796875|gb|ADJ47250.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 227

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 11/209 (5%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRP 105
           +  L   +G +  L V  +    ++   +V    P  +V  + +   D           P
Sbjct: 15  LVGLAILIGDTDDLAVAGEAGDGREALRLVRELRPDVVVMDIRMPGMDGIEATRRATAEP 74

Query: 106 TELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE- 161
                 V  T  ++      +    + +   +  +  I   + ++     +I        
Sbjct: 75  HPPKVLVLTTFDDDEYVYGALRAGASGFLLKSMALNAILDAIRVVAAGDALIAPSVTRRL 134

Query: 162 IGLLAAYQANMFKSYDVHWGKDFEL----TGREVECLTWISEGKTSDEIAVILGISRNTV 217
           I   A          D     D  L    T RE E L  + +G ++ EIA  L IS  T 
Sbjct: 135 IADFAGTAGPAAPEPDTEPAADSGLLAEITDREREVLALVGQGLSNTEIAERLVISAATA 194

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++A +  K   + R      A    +V
Sbjct: 195 KTHVARLFAKLEARDRVHLAIIAFEAGLV 223


>gi|315505229|ref|YP_004084116.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315411848|gb|ADU09965.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 212

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 10/163 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +   +    +  RP      +  T   +      ++                
Sbjct: 58  MDLQFGKGMGGAEATARITARPGAPRVLIVTTYDSDADTLPAIEAGATG----------Y 107

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   +    R    G          +  +        LT RE E L  +++G ++
Sbjct: 108 LLKDAPPEDLAAAVRTAAAGRTTLAPTVANRLMNRLRTPGTALTRRETEVLALVADGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I   L ++  TV +++A I  K    +R+ A+A A    ++
Sbjct: 168 HSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210


>gi|229015004|ref|ZP_04172081.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
 gi|228746271|gb|EEL96197.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
          Length = 188

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           ++   +  S +   G + E LT  E   L  IS+ KT+ EI+  L IS+ TV  +I+SI+
Sbjct: 105 SHMGYILFSKNQIMGNNIEALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSII 164

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    +R GA+   ++  ++
Sbjct: 165 RKLGVDSRVGAVVKGIKKGLI 185


>gi|269925647|ref|YP_003322270.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789307|gb|ACZ41448.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 217

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L+ ++ G T+ EIA  L ++  TV +++ +I RK   K R  A++ A    
Sbjct: 155 PLSERELEILSLMASGHTNSEIARELYVAVGTVKSHVNNIYRKLGAKNRVEALSRARELG 214

Query: 245 IV 246
           ++
Sbjct: 215 LI 216


>gi|66047505|ref|YP_237346.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|289675883|ref|ZP_06496773.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
 gi|302188577|ref|ZP_07265250.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
 gi|63258212|gb|AAY39308.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|330938127|gb|EGH41849.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952935|gb|EGH53195.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
 gi|330969528|gb|EGH69594.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 77

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + 
Sbjct: 16  NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75


>gi|116672252|ref|YP_833185.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116612361|gb|ABK05085.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24]
          Length = 426

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D++L  RE+E L  ++ G+ +  IA  L IS NTV  ++ +I RK    +R+ AIA A  
Sbjct: 363 DWKLGDRELEVLQLLAAGQRNRAIAAKLHISENTVKFHLRNIYRKVGATSRTEAIAMAHS 422

Query: 243 NNI 245
           N +
Sbjct: 423 NGV 425


>gi|307154251|ref|YP_003889635.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984479|gb|ADN16360.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 231

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V+  K  +LT RE E L ++ +G ++++IA  L I+  TV  ++ +I  K   K R+ AI
Sbjct: 155 VNAEKKIDLTRREKEVLQYLIKGLSNEQIAQQLYITVATVKAHLTAIFNKLGVKNRTQAI 214

Query: 238 AYAVR 242
             A++
Sbjct: 215 VAAMK 219


>gi|114320166|ref|YP_741849.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226560|gb|ABI56359.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 219

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 16/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D    +L  ++ R   G +++ P+              LA+  A 
Sbjct: 96  VHAALQAGADGYLLKDMEPEALVAELRRAAGGELVISPE--------------LASVLAQ 141

Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           +    +     +   ELT RE E L  I++G+++  IA  LG+   TV  ++ SI++K  
Sbjct: 142 VLTRPNHSAADELLAELTSRESEILRHIAKGQSNKMIARDLGLMEGTVKVHVKSILKKLR 201

Query: 230 TKTRSGAIAYAVRNN 244
             +R  A  +AV++ 
Sbjct: 202 MHSRVEAAVWAVQHG 216


>gi|89092629|ref|ZP_01165582.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
 gi|89083141|gb|EAR62360.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
          Length = 217

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 9/172 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-DNRYCSLT 134
            +V  D    ++     +EK +      +   +     H   E I          Y    
Sbjct: 53  DVVLMDVSMPVMNGFEAAEKFRDEQPNIK---VLILSMHDDREYIVKLIKCGAAGYVLKD 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              + +   +  +F  G          +      Q    ++ +    ++  LTGRE + L
Sbjct: 110 VSSSELITAIETVFSGGSYFSSGASQAL----FSQFEQEQAVNEKAEQE-ALTGREKDVL 164

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++EG ++ EIA  L IS  TV  +  +I  K    T +G   YA+ NN+V
Sbjct: 165 KLVAEGNSNKEIARTLDISVRTVETHRQNIKNKLDIHTAAGLTRYAIDNNLV 216


>gi|319785654|ref|YP_004145129.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464166|gb|ADV25898.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 214

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 16/217 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRC 89
           R+   D        + AL E +  +  L         D  Q Q +D +V SD     +  
Sbjct: 9   RVALADDQALVRAGLRALLERLEVTVALEAEDGQALLDALQAQPVD-VVLSDVRMPGMDG 67

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +A+    +       P  L    F      +         +        ++   ++ +  
Sbjct: 68  IAMLRGLR-ARGDATPV-LLLTTFDEADLLLDAREAGAQGFLLKDAAPGQLHQAILRVAA 125

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              ++          ++         +            REV  L  ++ G ++ EIA  
Sbjct: 126 GETLLAP--------VSTDPVRARYRFHDDRAPGEGFNPREVAILRLLAGGYSNKEIARS 177

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L ++  TV NY+++I+ K  T+ R+ A+  A+   I+
Sbjct: 178 LFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 214


>gi|307326516|ref|ZP_07605711.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
            Tu 4113]
 gi|306887924|gb|EFN18915.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
            Tu 4113]
          Length = 1086

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 39/77 (50%)

Query: 170  ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            + +  +      ++  LT RE + L  ++ G+++ +IA  L IS  T + ++++I+ K  
Sbjct: 1000 SPVPAAEPADPAEELGLTPRERDVLRLVAAGRSNRQIAEELFISPKTASVHVSNILAKLG 1059

Query: 230  TKTRSGAIAYAVRNNIV 246
               R  A A A R  +V
Sbjct: 1060 VSGRGEAAAVAHRLRLV 1076


>gi|298243906|ref|ZP_06967713.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297556960|gb|EFH90824.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 266

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y   +     +   +  ++ +G  I  +      +  A      +  D         
Sbjct: 137 ARGYILKSASAHEVAETIRTVYNEGLSIQPE------MTRAIVGEFRRLADTTSSNQGTD 190

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E+E + +++ G ++ EIA  L  S  TV NY++ I +K   + R+    +A+R  
Sbjct: 191 LLTEKELEIIRYVAAGLSNKEIAERLSYSEKTVKNYLSIIFQKLHLRDRTQVAIFALRQG 250

Query: 245 IV 246
           ++
Sbjct: 251 LL 252


>gi|284929446|ref|YP_003421968.1| LuxR family two component transcriptional regulator [cyanobacterium
           UCYN-A]
 gi|284809890|gb|ADB95587.1| two component transcriptional regulator, LuxR family
           [cyanobacterium UCYN-A]
          Length = 233

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 14/187 (7%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E  +  I+ SD     +      E+ ++ N LQ    +F        + I       + Y
Sbjct: 46  ETTIPDIIISDVMMPEIDGYQFLERIRHNNRLQTIPLIFLTARGMTADRIKGYNAGCDAY 105

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD------- 183
               FD   +   +     + +I   +++    +     A   K      G+        
Sbjct: 106 LPKPFDPEELEAIVKSFLERRKI--NEKIGNNSVKLEEIAQEIKGLKEQLGQQKTHLTVI 163

Query: 184 -----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + 
Sbjct: 164 PPSIKIDLTPREKSVLDLVAEGLMNKEIAARLNTSVRNVEKYVSRLFGKTETNSRTELVR 223

Query: 239 YAVRNNI 245
           +A+++ +
Sbjct: 224 FALKHGL 230


>gi|302546067|ref|ZP_07298409.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302463685|gb|EFL26778.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 5/174 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +A +        L     +    F      +       + +     
Sbjct: 50  DVVLMDIRMPGTDGLAATRMITEDPRLADVRVVMLTTFEVDEYVVDSLRAGASGFLGKGA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVE 192
           +   +   + +      ++    +   GL+A + A              +   LTGRE E
Sbjct: 110 EPGELLSAIRIAAAGEALLSP--VATKGLIARFLAQGVPGSGDAAYDASRLDALTGRERE 167

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G  +DEIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 168 VLVQVAGGHPNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYETGLV 221


>gi|196229624|ref|ZP_03128488.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225950|gb|EDY20456.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 13/220 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R+  ++    +   +     Y   +  +         ++    +    P  L+  + 
Sbjct: 1   MSIRIALVEDDQPFARTLQR---YFALTSAVTCDVVFPNAEEALRKIPKLAPELLLVDIN 57

Query: 92  LSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLML 146
           L + +       ++QR   + C +     E+      +    C   L     +  +  + 
Sbjct: 58  LPKMNGIEFVGQIVQRCPGMLCLMLTMYEESPLIFEALKAGACGYLLKRTPPQEIVTAIE 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
               G   +  ++    ++  +Q             +  L GREVE L  +++G    EI
Sbjct: 118 EAKAGGSPMTPQIAR-HVVNFFQKQPVPP--PAAPVEAGLAGREVEVLGLLAQGYLYKEI 174

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              LGIS +TVN++I  I  K   ++RS A+A      ++
Sbjct: 175 GESLGISTHTVNSHIRRIYEKLHVRSRSQAVAKY--RGLI 212


>gi|306841639|ref|ZP_07474330.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306288280|gb|EFM59656.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
          Length = 234

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE E L  +SEG  + +IA  L +SR+T+  +I +I RK A  +R+ A   A +
Sbjct: 170 NAGLSPRENEILRLVSEGLGNRDIAEQLFLSRHTIEAHIKNIYRKLAVSSRTQAAQAARQ 229

Query: 243 NNIV 246
             ++
Sbjct: 230 RGLL 233


>gi|294816579|ref|ZP_06775221.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|294321394|gb|EFG03529.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 223

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 7/161 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++  ++    +     L    F      +         +         +   L ++   
Sbjct: 59  GIAATEQLTRQVPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELVTALHVVHTG 118

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGKTSDE 205
             ++    L    L+++Y     +      G         LT RE E    I+ G  +  
Sbjct: 119 EAVVAPRLLTR--LISSYVTVPQRPATPAAGTGPTGVPDGLTPREREVWRLIAAGLDNTG 176

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  + +S +TV N+I ++  K   + R+ A+  A    +V
Sbjct: 177 IAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 217


>gi|256827097|ref|YP_003151056.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583240|gb|ACU94374.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 215

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F+TL          ++    L   + ++  G   + P     L  +L             
Sbjct: 92  FYTLRGGAAGYVLKNSSTEVLLGAIRKVATGETYIEPNMAQALSGKL------------H 139

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +S         EL+ RE E  + +++G T+ E A  L IS  TV  + + I  K    +
Sbjct: 140 GQSGVAEKNPYHELSSREFEIFSLLAQGYTNKEAADKLFISVKTVETHRSKIYAKLGVNS 199

Query: 233 RSGAIAYAVRNNIV 246
           R+  +  A++ +++
Sbjct: 200 RAELVHLALKYHLL 213


>gi|18413618|dbj|BAB84309.1| putative nitrate/nitrite response regulator [Halomonas
           halodenitrificans]
          Length = 221

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 12/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V + L          D     +   + +  +G M++      +L + L           N
Sbjct: 98  VVNALQSGADGYLLKDMDPDEMVRQLRQASLGRMVISESLTALLAEALRS-------HRN 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + D+H      LT RE E L  ++ G ++  IA  L I+  TV  ++  +++K   +
Sbjct: 151 QPAAPDIH-----SLTQREREILRELAAGLSNKMIARKLEITEGTVKVHVKHLLKKLNLR 205

Query: 232 TRSGAIAYAVRNNI 245
           +R  A  +AV+  I
Sbjct: 206 SRVEAAVWAVQEGI 219


>gi|158315190|ref|YP_001507698.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158110595|gb|ABW12792.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 226

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +   G D     L   +  +  G  LL P    +L  R       AA    
Sbjct: 93  VAQALRVGASGFLGKDVGTDELLSAIRTVAGGDALLSPAATRVLISRFLATPEPAA---- 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +  V+      LT RE E +  ++EG ++ EIA  L IS  T   ++   M K   +
Sbjct: 149 ---TATVNPVALAALTAREREVMALVAEGYSNHEIADRLVISPLTARTHVHRAMAKLNAR 205

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A ++ ++
Sbjct: 206 DRAQLVVIAYQSGLL 220


>gi|329939783|ref|ZP_08289084.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329301353|gb|EGG45248.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 208

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  +++GK++ EIA  + I+  TV +++  ++RK    TR+ A+A+A  + +
Sbjct: 133 LTPRESEVIVLLAQGKSNVEIAEKMSITTATVRSHVHHLLRKLGVGTRAQAVAFAYESGL 192

Query: 246 V 246
           +
Sbjct: 193 I 193


>gi|284041724|ref|YP_003392064.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945945|gb|ADB48689.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 218

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 6/158 (3%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPEN--ITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           L   D      +        +    PE   +         +         +   +  +  
Sbjct: 60  LPRLDGVAATRRLAAHRVLLLTSGSPEERLVEALRAGARGFLLKHASAGDLVAAVRAVAA 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAV 208
              ++          L    A M             ELT RE++ L  ++ G ++ EIA 
Sbjct: 120 GDMLLSPAATR---ALFERIAPMLHLDAAPPPSALGELTERELDVLRLLARGLSNGEIAA 176

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  TV  +++ ++RK   + R  A+ +A  + +V
Sbjct: 177 QLFVSGATVKTHVSHLLRKLCLRDRVQAVVFAYDSGLV 214


>gi|256394854|ref|YP_003116418.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361080|gb|ACU74577.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 232

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              D    +   LT RE E L  I+ G+++ EIA  L +S  TV  +++ I+ K   + R
Sbjct: 150 PRADERLERLERLTDREREVLVEIARGQSNAEIAETLHLSEATVKTHVSRILPKLELRDR 209

Query: 234 SGAIAYAVRNNIV 246
             A+ +A    +V
Sbjct: 210 VQAVVFAYEIGLV 222


>gi|172035594|ref|YP_001802095.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171697048|gb|ACB50029.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 219

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 79/200 (39%), Gaps = 19/200 (9%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110
           +Y+    + +   +  +E     +++   P  ++  + + E D Y     V Q     + 
Sbjct: 30  DYLEFQGYEVTTAENGKEAL--EVLTKQIPDMIICDVMMPEMDGYSLIEKVRQDARTSWV 87

Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           PV     +      +       + Y    F+   +   +     +   +    +     +
Sbjct: 88  PVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLKQASRL----MRHKANI 143

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +   +N  +        + ELT  E + +  +++G ++ ++A  L +S+ T+ +++++++
Sbjct: 144 SLDDSNRIQVPS-----NVELTPTETKVVQLVAQGLSNRDVAEKLSVSQRTIESHVSNML 198

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            KT    R+    +A+ N+I
Sbjct: 199 NKTNLHNRTELARWAIENSI 218


>gi|152965947|ref|YP_001361731.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360464|gb|ABS03467.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 230

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG ++ EIA  L +S  TV  ++ +I+ K   + R  A+  A    +
Sbjct: 160 LTPRELDVLRCLAEGSSNAEIAERLVLSLTTVKTHVGNILAKLGLRDRVQAVIAAYEFGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|21232702|ref|NP_638619.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767223|ref|YP_241985.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114513|gb|AAM42543.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572555|gb|AAY47965.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 921

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D     D   + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R 
Sbjct: 839 SGDDDPANDL-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARSRE 897

Query: 235 GAIAYAVRNNIV 246
           GA+A A++  ++
Sbjct: 898 GALAQALQRGLL 909


>gi|330888767|gb|EGH21428.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str.
           301020]
          Length = 74

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + 
Sbjct: 13  NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 72

Query: 245 I 245
           +
Sbjct: 73  V 73


>gi|269794179|ref|YP_003313634.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269096364|gb|ACZ20800.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 236

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 5/151 (3%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
               + P  +    F      +       + +         +   +  +     +I    
Sbjct: 84  ARGDEAPRIIVLTTFDLDEYALEAIRSGASGFLLKDAPPEEMLAAIRTVHSGDAVIAPST 143

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRN 215
                LL      + +   V  G+      LT RE E L  ++ G+ + EIA  L ++  
Sbjct: 144 TRR--LLDRLVTTLPEEQLVDSGQASAVDSLTEREREVLVLMARGRANQEIASDLFVAEA 201

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+  ++  I+ K   + R  A+  A    +V
Sbjct: 202 TIKTHVGRILSKLGARDRVQAVVTAYETGLV 232


>gi|169826466|ref|YP_001696624.1| hypothetical protein Bsph_0878 [Lysinibacillus sphaericus C3-41]
 gi|168990954|gb|ACA38494.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 377

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K   V    +  LT RE   L  ++EG  + +I  +L +S +TV +Y++S+M K   K R
Sbjct: 304 KGEKVEKCTELHLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNR 363

Query: 234 SGAIAYAVRNNIV 246
           +  +A A R  ++
Sbjct: 364 TQVVASAFRLGLL 376


>gi|319794441|ref|YP_004156081.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596904|gb|ADU37970.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS]
          Length = 504

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 44/106 (41%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            +G M    +     +  +  +   A   A    +       +  L+ RE+E L  IS+G
Sbjct: 399 ALGCMKEDVEAGRFDQHVVDALLACAMSHAPSRSAAPQQQRGEQALSERELEVLRCISKG 458

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + + E+A  LGIS  TV  ++  +  K    TR+ A   A    ++
Sbjct: 459 ENTKEVARALGISPRTVRTHVERVFLKLECSTRAAATLKAATRGLI 504


>gi|301305257|ref|ZP_07211354.1| autoinducer binding domain protein [Escherichia coli MS 124-1]
 gi|300839463|gb|EFK67223.1| autoinducer binding domain protein [Escherichia coli MS 124-1]
          Length = 226

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           H L   +T    + NR              + +L  + ++ ++  L    L+A  + N  
Sbjct: 113 HGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQL-LVRESLMALMRLN-- 169

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              ++    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K    
Sbjct: 170 --DEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKIKCT 225


>gi|311740276|ref|ZP_07714107.1| LuxR family DNA-binding response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304659|gb|EFQ80731.1| LuxR family DNA-binding response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 205

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 18/166 (10%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARI 140
           +V  + +   D      +       PV       T  + +         Y         +
Sbjct: 53  VVCDIQMPGMDGIAATKRVVEAGGPPVLILTTYDTQADILAAVEAGAMGYLLKDSPEQAL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++      R +  +    + LLA                   L+ RE+E L  +S G
Sbjct: 113 HEAVLNTAAHRRTLAPEV---VDLLAQRVGR----------PQESLSTRELEILRALSTG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ E+A  L IS  TV  ++  I +K   +TR+ A+  A    ++
Sbjct: 160 SSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205


>gi|227505685|ref|ZP_03935734.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197653|gb|EEI77701.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 212

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ EI   L +S  TV +++  I  K   ++R+ A+A A    +
Sbjct: 152 LTPRELEVLKLVAAGASNREIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGV 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|254522250|ref|ZP_05134305.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219719841|gb|EED38366.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 217

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE E L  ++ G ++  I   + IS  TV  ++ S+M K     R+ A+  A+R
Sbjct: 146 EDRLSPRETEVLRHVASGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALR 205

Query: 243 NNIV 246
             I+
Sbjct: 206 RGII 209


>gi|302337778|ref|YP_003802984.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634963|gb|ADK80390.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM
           11293]
          Length = 264

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + KD+ L+ RE E    + +GKT+ EI   L IS  TV  +IASI RKT  + R+   A
Sbjct: 200 EFAKDYALSPRETEITALLLQGKTNAEICQSLFISLATVKTHIASIFRKTGARNRTELSA 259

Query: 239 YAVRNN 244
              RN 
Sbjct: 260 L-FRNG 264


>gi|167616524|ref|ZP_02385155.1| autoinducer-binding transcriptional regulator, LuxR family,
           putative [Burkholderia thailandensis Bt4]
          Length = 213

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 112 VFHTLPEN-ITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------- 162
           VF ++ +      +    RY  +L+       +G +      R I+++ L +I       
Sbjct: 68  VFESMADGLWAETSDQGVRYGWALSVRDRWGAVGTLKFARGTREIVQEELDDIEPEMIWL 127

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA          +   G+   ++  E + L W +EGKT  EI+ IL +S   +N +I 
Sbjct: 128 AHLAHDTIGSLMRDETIPGEIARVSLVERQILLWTAEGKTVSEISSILQMSVRNINFHIQ 187

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K     ++ A   A    ++
Sbjct: 188 NVVGKLGATNKTHAAVKATLVGLI 211


>gi|23099565|ref|NP_693031.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22777795|dbj|BAC14066.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 74

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREKEVFELLVQDKTTKEIAQELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|305680308|ref|ZP_07403116.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659839|gb|EFM49338.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 212

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ EI   L +S  TV +++  I  K   ++R+ A+A A +  +
Sbjct: 152 LTPRELEVLKLVASGSSNREIGRALLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGV 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|254462681|ref|ZP_05076097.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2083]
 gi|206679270|gb|EDZ43757.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 244

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 75/201 (37%), Gaps = 21/201 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSS-DWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
           + +G + +     + +  Q+  +I  +   P   +  +      ++ +        F  V
Sbjct: 54  QVIGFTTYDDAWKEHYTSQRFQNIDPTLHLPMRSIAPIDWQRLREHRD--------FDRV 105

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL-----FPKGRIILRDRLWEIGLLAA 167
           F    +       + ++  S+        +GL+ +           + ++ + E+   A 
Sbjct: 106 FEHARD-----FKIKDQGLSVPIHGPYGEVGLISVTRDCSLGTWEKLRKNVITELQTAAV 160

Query: 168 YQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +     D   +  +  +L+ RE E L W + GK+  +I VIL IS  TV  ++ S  
Sbjct: 161 SLHDTVMQSDTLGYALRRPQLSSRECEVLQWTAAGKSQIDIGVILTISSRTVEVHLRSAR 220

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K +  +   A+  A+    +
Sbjct: 221 SKLSALSTPQAVGRAIGMGFI 241


>gi|188990306|ref|YP_001902316.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732066|emb|CAP50258.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 921

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D     D   + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R 
Sbjct: 839 SGDDDPANDL-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARSRE 897

Query: 235 GAIAYAVRNNIV 246
           GA+A A++  ++
Sbjct: 898 GALAQALQRGLL 909


>gi|206969319|ref|ZP_03230274.1| Two-component protein Kinase [Bacillus cereus AH1134]
 gi|206736360|gb|EDZ53518.1| Two-component protein Kinase [Bacillus cereus AH1134]
          Length = 595

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 350 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 409

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       + +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 410 --VVGLAEDGNEAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 466

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 467 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 522

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K     + 
Sbjct: 523 ETPESKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKE 582

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 583 EAVQKALEIGII 594


>gi|119714227|ref|YP_919369.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119526136|gb|ABL79506.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 574

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E L+ + EG ++ EIA  L IS  T  +++++I+ K   ++R+ A AYA+ +
Sbjct: 504 LSRREQEVLSLVVEGLSNAEIAERLFISVKTAGHHVSNILTKLGVRSRTEATAYALLH 561


>gi|294628886|ref|ZP_06707446.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
 gi|292832219|gb|EFF90568.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
          Length = 222

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 45/137 (32%), Gaps = 2/137 (1%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +    T           L   V R   G  +  P    ++        L A  
Sbjct: 85  HADVLEAVKSGATGYLLKSASTQELLDAVRRTAAGDPVFTPGLAGLVLGEYRR--LAAEP 142

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                   D        LT RE E L  +++G +  +IA  L IS  TV N++ + + K 
Sbjct: 143 APAAGAGTDGPEPGAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKL 202

Query: 229 ATKTRSGAIAYAVRNNI 245
               R   + YA+   +
Sbjct: 203 QLHNRVELVRYAIERGL 219


>gi|271965453|ref|YP_003339649.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508628|gb|ACZ86906.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 233

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D+    +   V R   G  LL P        R+ E  L A  QA 
Sbjct: 90  VYAALRAGAIGFLVKDDEPERMVDAVRRAAAGEPLLAPSVLR----RVVERALAAEEQAA 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +             LT RE+E L  +  G ++ EIA  L +   TV  ++++ M K   +
Sbjct: 146 VQVPAG--------LTDRELEVLALVGVGLSNAEIADALHVGVTTVKTHVSTAMDKLGLR 197

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   A R  +V
Sbjct: 198 NRTQAAVVAHRIGLV 212


>gi|221633346|ref|YP_002522571.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
 gi|221155795|gb|ACM04922.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
          Length = 246

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 77  IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRY 130
           +V+   P  ++  + +   D       ++Q+   +   +     +    +         Y
Sbjct: 68  MVAELQPDVVLMDINMPGMDGIRATEAIVQQYRHVHVLMLTMYDDEEYVLHAIRAGARSY 127

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   + +    G  I  D      L+  YQ  + K+      +  +L+ RE
Sbjct: 128 LVKNSKPEELLRAIHVAAEGGATIDPD--LAPILMREYQRLLTKAP----TRGQDLSDRE 181

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L  +++G  + +IA  L ++ +TV N ++++ +K   + R+ A+ YA+ + +V
Sbjct: 182 LTMLRLLAQGYNNRQIADALNLAESTVKNNLSALFQKLGVRDRTQAVIYAISHGLV 237


>gi|153010196|ref|YP_001371410.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562084|gb|ABS15581.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 216

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           +R RL  +  + A  A+   +     G+   L+ RE E L  I +G  + EIA  LG+S 
Sbjct: 124 IRARLNLVARVKAISAH--PAAMELEGEFIHLSRRETEVLKEIGDGHKNGEIARKLGLSE 181

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV++Y+ +I +K +  +R+ A   A+R  +V
Sbjct: 182 HTVSDYVKAIYQKLSVSSRAEATREAIRRGLV 213


>gi|114765164|ref|ZP_01444308.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542439|gb|EAU45466.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 204

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 1/157 (0%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
             L   D     +     L   +      ++   +G  +R  +           +    P
Sbjct: 47  YDLVLLDYKMPGMNGLQGLKQALAIGGARHVALISGEASREIAEEALELGAAGFVPKTLP 106

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208
              ++   R   +G   A  A M  + +V      + LT RE+E L  ++EGK++ EIA 
Sbjct: 107 AKSLVNAVRFMAMGEQYAPIAFMTAAEEVEEHPLAKSLTKREMEVLKGLTEGKSNKEIAR 166

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L I+  T+  ++ ++ RK     R+ A   A    I
Sbjct: 167 DLEITEPTIKLHVKTLYRKLDVNNRTQAAIVARDAGI 203


>gi|163940925|ref|YP_001645809.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863122|gb|ABY44181.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 595

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 350 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 409

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       Q +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 410 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 466

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      Q    +
Sbjct: 467 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQIETPQ 526

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S        +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 527 SKATA----YELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 582

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 583 EAVQKALEIGII 594


>gi|317491518|ref|ZP_07949954.1| autoinducer binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316921065|gb|EFV42388.1| autoinducer binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 246

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L W S GKT  EIA I+GIS  TV  ++ +++ K        AI   V   +
Sbjct: 181 FTAREHEVLYWASMGKTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELEL 240

Query: 246 V 246
           +
Sbjct: 241 I 241


>gi|322432955|ref|YP_004210204.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9]
 gi|321165182|gb|ADW70886.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 210

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                D  L+ RE+E L  ++ G ++  IA  L +S +TV  +I +I+ K     R+ A+
Sbjct: 139 AEHAGDDILSAREIEVLRHVAAGNSNKIIASNLTLSEHTVKGHIKNILSKLGASDRTHAV 198

Query: 238 AYAVRNNIV 246
             A+R   +
Sbjct: 199 MIALRRGFL 207


>gi|238061615|ref|ZP_04606324.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237883426|gb|EEP72254.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 233

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L   ++     D     L   +  +  G  LL P+             L+  + A 
Sbjct: 104 VFEALQAGVSGFLLKDAGPAELLHAIRVVAAGDALLAPRITR---------RLIGQFTAQ 154

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +      +   LT RE E LT +  G +++EI   L +S  T   +++  M K   +
Sbjct: 155 RT-ATQAAESRLAVLTQREREVLTLVGRGLSNNEIGAELFLSPATARTHVSHAMAKLGAR 213

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A +  +V
Sbjct: 214 DRAQLVVIAYQTGLV 228


>gi|115265604|dbj|BAF32866.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv.
           actinidiae]
 gi|330966735|gb|EGH66995.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 77

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + 
Sbjct: 16  NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75


>gi|260914572|ref|ZP_05921040.1| nitrate/nitrite response regulator protein NarL [Pasteurella
           dagmatis ATCC 43325]
 gi|260631363|gb|EEX49546.1| nitrate/nitrite response regulator protein NarL [Pasteurella
           dagmatis ATCC 43325]
          Length = 209

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 17/200 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           L++       + +  ++  D  F +V       +     +  +P   +       L    
Sbjct: 8   LIIDDHPLMRRGIKQLIELDESFSVVGDAGNGSEGINLALQTQPDLIILDLNMKGLSGLD 67

Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------ 164
           T  A    G+D R   LT   ++  I  ++       +L+D   +  L            
Sbjct: 68  TLKALRSEGIDARILILTVSDSKNDIFTLIDAGADGYLLKDTEPDTLLGQIKRISQGEVI 127

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+    N            + LT RE++ L  I+ G ++ +IA  L IS  TV  +I ++
Sbjct: 128 LSDSIKNALIERQSATDPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNL 187

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           +RK    +R  A      + 
Sbjct: 188 LRKLNVHSRVAATVLYFEHK 207


>gi|317054417|ref|YP_004118442.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
 gi|316952412|gb|ADU71886.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
          Length = 241

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                +DR    GLL      M        + H  ++  L+ RE E L W S GKT  EI
Sbjct: 136 NEKATKDRHDLQGLLIDTHEMMLHLYRDESERHKSEENMLSSRENEILYWSSTGKTYPEI 195

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A +L I+ +TV  ++  I++K        AI+ A+  NI+
Sbjct: 196 AHMLNITVSTVKFHMGKIVKKMGVNNAKHAISLAIELNII 235


>gi|271962388|ref|YP_003336584.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505563|gb|ACZ83841.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +LA   A    +  +       L+ RE+E L  ++ G T+ E AV L I+  TV +++ 
Sbjct: 127 SVLAPSVAARLMNR-MRAPAPQLLSPRELEVLELVAAGNTNREAAVRLFITEATVKSHLL 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I  K     R+ A+  A    ++
Sbjct: 186 NIYTKLGVNDRAAAVTEAFNRGLL 209


>gi|169630793|ref|YP_001704442.1| two-component LuxR family response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169242760|emb|CAM63788.1| Putative two-component system response regulator, LuxR family
           [Mycobacterium abscessus]
          Length = 215

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 2/136 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V     + I         Y + T   + +   +  +     +    RL    +
Sbjct: 76  PVFLALSVSDAAEDVIAVIRAGARGYVTKTISGSELADAVRRVAGGDAVFSP-RLAGF-V 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L ++             +   LT RE+E L  ++ G T  EIA  L IS  TV  + +++
Sbjct: 134 LDSFTGRSNAPEPALDPELDSLTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNV 193

Query: 225 MRKTATKTRSGAIAYA 240
           +RKT    R+    +A
Sbjct: 194 LRKTQQSNRNALTRWA 209


>gi|333027679|ref|ZP_08455743.1| putative two component transcriptional regulator [Streptomyces sp.
           Tu6071]
 gi|332747531|gb|EGJ77972.1| putative two component transcriptional regulator [Streptomyces sp.
           Tu6071]
          Length = 215

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 2/137 (1%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           R   L    F          A   + +         +   +         +       I 
Sbjct: 76  RSRALMLTTFDLDAYVDDALAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRI- 134

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +  + +   +  D    +  +LT REV+ L  I +G ++ EIA  L +S +TV  +++ 
Sbjct: 135 -IEGHLSGRRRPSDQDLARLRDLTEREVDVLRLIRDGLSNAEIADRLVVSLHTVKTHVSR 193

Query: 224 IMRKTATKTRSGAIAYA 240
           ++ KT  ++R+ A   A
Sbjct: 194 VLTKTGCQSRAQAAVLA 210


>gi|224283771|ref|ZP_03647093.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 277

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +  +        Y + T     + I  +    +G  +   +L    +L+A+Q        
Sbjct: 148 DVGSVIRAGARGYVTKTITGDDL-ISSIKQVHEGYAVFSPKLAGF-VLSAFQGAPMDGAG 205

Query: 178 VHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              G+D EL   +GRE E +  I+ G T  E+A  L IS  TV  ++++++RK     R+
Sbjct: 206 GARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETHMSNVLRKLQLSNRT 265

Query: 235 GAIAYAVRNNIV 246
               +A    IV
Sbjct: 266 ELTRWAADRRIV 277


>gi|94496793|ref|ZP_01303368.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58]
 gi|94423806|gb|EAT08832.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58]
          Length = 256

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 71/235 (30%), Gaps = 20/235 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            DLL  +  +         M  L   +G  HF L+  D    ++ D +   D+P  +V  
Sbjct: 13  DDLLRALRKVASREELAALMTCLASEIGFRHFALIHHDPLAGERPDRVDIRDYPAAIVDR 72

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR-------- 141
           +    + +   V++           +  + I      D    SL F              
Sbjct: 73  LFDQGQLRRDPVIRGCLFSDGAFLWSDLDKIITFTRQDRH--SLEFGAGHGLNEGITVPH 130

Query: 142 ------IGLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREV 191
                 IG           L  R      +    A   A          G    L  R  
Sbjct: 131 VLLGECIGSCTFAGATDPQLASRYLGFAQITGIFAFQAARRMLLASPLIGPAPRLHPRPR 190

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +C+     G ++ EIA  LG++  TV+ Y+    R      R+  +  AV    +
Sbjct: 191 DCVVLAGRGFSNKEIARELGLTPRTVDGYLTEARRLFDAHDRAELVVSAVLAGEI 245


>gi|332703486|ref|ZP_08423574.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553635|gb|EGJ50679.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 213

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 58/181 (32%), Gaps = 10/181 (5%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF------HTLPENITP 122
           F +     +  S  P  L  C++ +    +    QR      P        H L   +  
Sbjct: 36  FSQADTAQVADSRRPLLLWDCLSNNLPKFWTMCSQRAENGNGPCLALINAPHELTLELQA 95

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                +           +  G+  +        R+ L              +        
Sbjct: 96  LRNGADGLFRECDPPDLLIKGIASILHGDLWYSREVLSRF----VRDERKVRPQATQSAD 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  I+ G +++EIA  L IS +TV  +  +I  K     R  A  +AV+
Sbjct: 152 TSTLTPREREVLERIAAGASNEEIAKNLFISPSTVKTHAYNIYAKIRVPNRIQAALWAVQ 211

Query: 243 N 243
           N
Sbjct: 212 N 212


>gi|325003494|ref|ZP_08124606.1| two component system response regulator [Pseudonocardia sp. P1]
          Length = 222

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +  + +      L     +    F           G  + +     
Sbjct: 49  DVVLMDIRMPGTDGLTATREITGDPGLSGTRVIVLTTFTDDSYVFEAIRGGASGFLVKDS 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   + ++     ++         L+A + A       V    D  LT RE E L 
Sbjct: 109 EPADLIHAIRIVHGGEALLAPAVTR--TLIAEFAARSRGGPAVSPRLD-ALTEREREVLA 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++DEIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 166 EVAAGLSNDEIAGRLHMSPTTAKTHVSRTMTKLGARDRAQLVVVAYESGLV 216


>gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 231

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 22/215 (10%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
           A+ EY+  S F +      +E     ++  + P  ++  + + + D Y     +   P  
Sbjct: 17  AVKEYLQESGFGVRVASNAREGW--ELIQQNTPDLVISDIMMPQVDGYQFLKQLRDDPRL 74

Query: 108 LFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLFPKG-----RIILRD 157
              PV     + +T           + Y S  FD   +   +  L  K            
Sbjct: 75  ASLPVIFLTAKGMTGDRIQGYQAGVDAYLSKPFDPDELIAIINNLLEKRISQTTVAGEDS 134

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTWISEGKTSDEIAVIL 210
              EI  LA   A +        G          +LT RE   L  +++G  + EIA  L
Sbjct: 135 ENMEIAKLAHEIAKIKDLLTPRTGISQTPPPFTIDLTPREQSVLNLVAQGLMNKEIARKL 194

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             S   V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 195 ETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|271966129|ref|YP_003340325.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509304|gb|ACZ87582.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  I+ G  + E+A  L IS  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 150 SPRELEVLRLIARGAANKEVARALLISETTVKTHLKHVFAKLGVDNRAAAVVVAMEQRLI 209


>gi|291302714|ref|YP_003513992.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571934|gb|ADD44899.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 218

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 62/184 (33%), Gaps = 9/184 (4%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               L +E+K D ++  D    LV  +  ++       L     +    F    +     
Sbjct: 38  AAVALAREEKPDVLLM-DIQMPLVDGLTATKLIVGDPDLDGVRVVMLTTFAADAKLFAAL 96

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     +   +  G+ ++     ++          +       F         D
Sbjct: 97  RAGASGYLVKDAEPHELLHGVRVVARGDGLLSAS-------VTRRVIESFADTTATDAPD 149

Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + LT RE E L  ++ G ++ EIA  L +S  T   ++   M K   + R+  + +A  
Sbjct: 150 IDGLTDRETEVLGLVARGLSNAEIAGRLSMSPATAKTHVNRTMTKLGARDRAQLVIFAYE 209

Query: 243 NNIV 246
             +V
Sbjct: 210 TGLV 213


>gi|167578384|ref|ZP_02371258.1| autoinducer-binding transcriptional regulator, LuxR family,
           putative [Burkholderia thailandensis TXDOH]
 gi|257143030|ref|ZP_05591292.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
          Length = 215

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 112 VFHTLPEN-ITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------- 162
           VF ++ +      +    RY  +L+       +G +      R I+++ L +I       
Sbjct: 70  VFESMADGLWAETSDQGVRYGWALSVRDRWGAVGTLKFARGTREIVQEELDDIEPEMIWL 129

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA          +   G+   ++  E + L W +EGKT  EI+ IL +S   +N +I 
Sbjct: 130 AHLAHDTIGSLMRDETIPGEIARVSLVERQILLWTAEGKTVSEISSILQMSVRNINFHIQ 189

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K     ++ A   A    ++
Sbjct: 190 NVVGKLGATNKTHAAVKATLVGLI 213


>gi|126661670|ref|ZP_01732679.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
 gi|126617044|gb|EAZ87904.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
          Length = 201

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE++ L  I  G  + +IA  L I+  TV  ++ +I+ K     R+ A   A+R+
Sbjct: 138 YPLTERELDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKLCVDDRTQAAVRALRS 197

Query: 244 NIV 246
            +V
Sbjct: 198 GLV 200


>gi|57234766|ref|YP_181176.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57225214|gb|AAW40271.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 232

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L   S+G ++ EIA  L +S  TV  ++++I  K     R+ AI    R  
Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLELSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213

Query: 245 IV 246
            V
Sbjct: 214 YV 215


>gi|83312988|ref|YP_423252.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947829|dbj|BAE52693.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 290

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 70/210 (33%), Gaps = 18/210 (8%)

Query: 45  WTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +   +  + +       ++   D        Q +K   IV  D          ++  +  
Sbjct: 83  FRDGLRHVLDQFEGPPTIIEACDFPQAIAAVQSEKDIDIVLLDLTMP-----GMAWTEGL 137

Query: 99  YNVLQR-PTELFCPVFHTLPENITPPAGMDNRYCSLTF--DVARIRIGLMLLFPKGRIIL 155
             + +  P+ +   V     +       ++            +R+ +  + L   G + L
Sbjct: 138 AKLKELLPSTVPLIVLSASDDRRHVLQAVNMGAAGFIPKTSSSRVMLSALKLVLSGGVYL 197

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
              L E G                      LT R+ E L  + +GK++ EIA +L ++  
Sbjct: 198 PPALLEQGGPGGDDGAPVAGESAIAS----LTPRQREVLALLGQGKSNKEIARVLELAEG 253

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TV  ++ +I++      R+ A+  A    +
Sbjct: 254 TVKLHVTAILKALNVNNRTRAVVAASHLGL 283


>gi|312972929|ref|ZP_07787102.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
 gi|310332871|gb|EFQ00085.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
          Length = 123

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 49  EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 108

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 109 IELIKTALRMGV 120


>gi|307310532|ref|ZP_07590180.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|306909427|gb|EFN39922.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|323183401|gb|EFZ68798.1| transcriptional regulator, LuxR family protein [Escherichia coli
           1357]
          Length = 147

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 73  EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 132

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 133 IELIKTALRMGV 144


>gi|302036525|ref|YP_003796847.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604589|emb|CBK40921.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 68/218 (31%), Gaps = 15/218 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTE----YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           L R++  D           L +     VG         +   E K D IV  D    ++ 
Sbjct: 3   LPRVLLADDHTLVLEGFRRLLDDQCELVGTVGDGRALLEAIPELKPD-IVILDISMPVLN 61

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +  +   K      +   +     H  P  +            L   V         L 
Sbjct: 62  GIDAARVLKVKFPQVKVVFIT---MHADPAYVRAAFEAGASAYLLKRCVGE------ELG 112

Query: 149 PKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              R +     +   L+      +M +  D       ELT R+ E L  ++EG T  +IA
Sbjct: 113 QAIRAVRSGNFYVTPLVTKDVVESMLRGIDGGAPSGPELTTRQREVLQLLAEGHTVKDIA 172

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS  TV  +   IM +    T    + YA+   +
Sbjct: 173 GTLNISPRTVEFHKGQIMEQLNLHTTVELVKYALAQGL 210


>gi|296118498|ref|ZP_06837076.1| DNA-binding response regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968397|gb|EFG81644.1| DNA-binding response regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 206

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 18/166 (10%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARI 140
           +V  + +   D      +       PV       T  + I         Y         +
Sbjct: 54  VVCDIQMPGMDGISATRRVRDAGGPPVLILTTYDTEADIIAAVEAGALGYLLKDSPEQVL 113

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++      R +  +     GLLA       +S          L+ RE+E L  ++ G
Sbjct: 114 HDAVVATVEGRRTLSPEV---AGLLAERVGRPQQS----------LSAREIEILQALATG 160

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ ++A  + IS  TV  ++  I +K     R+ A+  A    ++
Sbjct: 161 ASNKQLAKQMFISEATVKTHLIHIYQKLGVDNRTAAVTVARERKLI 206


>gi|255526737|ref|ZP_05393639.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296187028|ref|ZP_06855428.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|255509572|gb|EET85910.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296048466|gb|EFG87900.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 213

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M +   +   K  +LT RE E L  I +G ++ +I+  L IS NTV  +   I  K   K
Sbjct: 132 MVRENSIEPEKIEQLTAREKEILCEIGKGMSNQQISKKLCISENTVKKHNNHIFDKLNMK 191

Query: 232 TRSGAIAYAVRNNIV 246
            R+    YA +  ++
Sbjct: 192 DRTQLALYANKCGML 206


>gi|152965318|ref|YP_001361102.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151359835|gb|ABS02838.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 249

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 2/164 (1%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  S           P  +    F      +       + +         +   +
Sbjct: 76  EATRRITGSGTAGAGPDAGAPKVVVLTTFDLDEYVVAAIGAGASGFLLKDAPPEELLAAV 135

Query: 145 MLLFPKGRIILRDRLWEIGLLAA--YQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
             +     +I       +        +A          G   +LT RE+E L  ++ G +
Sbjct: 136 RTVHSGDAVIAASSTRRLLQHVGPMLRAGAASPAAAAQGVPADLTPRELEVLECMAHGLS 195

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA    +S  TV  ++  ++ KT ++ R  A+  A    +V
Sbjct: 196 NGEIAARFVVSEATVKTHVGRVLAKTRSRDRVQAVVLAYAAGLV 239


>gi|239980308|ref|ZP_04702832.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291452173|ref|ZP_06591563.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355122|gb|EFE82024.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 229

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 8/134 (5%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +     D     L   +  +  G  ++ P     L DR +   L  A  A  
Sbjct: 93  FTGLRAGASGFMLKDVPPSELLTAIRSVHSGDAVVAPSTTRRLLDR-FAPMLPDASAAPR 151

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D        LTGRE E +  +++G ++ EIA  L +S  TV  ++  I+ K   + 
Sbjct: 152 HAGLD-------RLTGREREVMVLVAQGLSNGEIAAHLVLSEATVKTHVGRILTKLGLRD 204

Query: 233 RSGAIAYAVRNNIV 246
           R   +  A    +V
Sbjct: 205 RVQVVVLAYETGLV 218


>gi|291303040|ref|YP_003514318.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572260|gb|ADD45225.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 215

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 6/161 (3%)

Query: 89  CMALSEKDKYYNVLQRPTE-LFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGL 144
            M + +       L++      C +  T  E+      +D     +     D   + IG+
Sbjct: 56  RMPVLDGLGALAELRQAAPATRCVMLTTFDEDEFIARALDAGAAGFLLKASDPRELIIGV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +       +  +A +  +          K  ELT RE E L  I+ G ++ 
Sbjct: 116 RAVADGAAYLSPRVAGRV--IAEFDTDRLTRGTGAQRKVAELTPRENEVLGLIASGLSNQ 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EI   L ++  TV  ++++I+++   + R  A     +  +
Sbjct: 174 EIGRRLHLTEGTVKAHVSAILQRLGVRNRVEAAIIGYQAGL 214


>gi|116253119|ref|YP_768957.1| AHL-dependent transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115257767|emb|CAK08865.1| putative AHL-dependent transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 241

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 81/231 (35%), Gaps = 21/231 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
               I     V     +  L    G     + L +      +     V + +P   V   
Sbjct: 13  AFEQIKAAANVDAA--IRILQAEYGLDFVTYHLAQTIAA--KIDSPFVRTTYPDAWVSRY 68

Query: 91  ALSEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVARIR 141
            L+   K   ++++  E   P         PE           G+     S+       R
Sbjct: 69  LLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128

Query: 142 IGLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195
             L+ L  +        L        +  A+  +    Y++H   D    L+ RE+ECL 
Sbjct: 129 RALLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPSLSPREIECLH 188

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 189 WTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|332978141|gb|EGK14877.1| transcriptional regulatory protein DegU [Desmospora sp. 8437]
          Length = 92

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I+++M+K   K RS A+   VR  
Sbjct: 30  LTNREREVFELLVQDKTTKEIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELVRLG 88


>gi|207742850|ref|YP_002259242.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609]
 gi|206594244|emb|CAQ61171.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609]
          Length = 252

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 24/189 (12%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D IV+ D+P + +  +          +++R      PV+    +   P A +D  + +
Sbjct: 52  LMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAAAPVAEIDRGWLA 108

Query: 133 ------LTFDVARI----------RIGLMLLFPKGRIILRDRLWEIG-----LLAAYQAN 171
                 L   VA                  L       L   L ++       L    A+
Sbjct: 109 KFIAYDLRNAVADGVYDEGHCIGTYFSFHRLVSVNEPFLASVLRDLTPVLHRTLMRAVAD 168

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K++         L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT   
Sbjct: 169 TEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 228

Query: 232 TRSGAIAYA 240
            R G    A
Sbjct: 229 NRVGVAVLA 237


>gi|83310446|ref|YP_420710.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945287|dbj|BAE50151.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 209

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G  + EIA  LGI+  TV  +   IM+K      +   AYA+R  +
Sbjct: 148 LTAREREVLQLIARGHKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|322383770|ref|ZP_08057521.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151982|gb|EFX44925.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 213

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  I++GKT+ +IA  L IS  TV  ++++++ K     R+    YA R
Sbjct: 146 EEGLTIREKEVLLLIADGKTNKDIAEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHR 205

Query: 243 NN 244
             
Sbjct: 206 KG 207


>gi|302335061|ref|YP_003800268.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Olsenella uli DSM 7084]
 gi|301318901|gb|ADK67388.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Olsenella uli DSM 7084]
          Length = 787

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEI 206
             K   +  D+L  +   A  QA+ + ++     G    LT  E + L  I + K++ EI
Sbjct: 688 HAKEMGVDEDQLARLVRGARAQASHYPNFMSSPSGPAEPLTKTEGQVLRLICQDKSNAEI 747

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +LGI   TV  +++ I+ K     R+ A + A R ++V
Sbjct: 748 GELLGIKLPTVKTHVSHILTKLGVSRRAQAASEARRLHLV 787


>gi|288556565|ref|YP_003428500.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288547725|gb|ADC51608.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 210

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 27/183 (14%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +R  +    +   I+ S WP   V  +     D+Y                 L       
Sbjct: 55  IRMPVMDGLEAARIMHSRWPERKVLILTTFNDDEYA-------------LEALRNGARGY 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              D     L   +     G + +                 +AA               D
Sbjct: 102 MLKDADAVELIRAIRSCLSGGLSIEEH--------------VAAKVMPRLMKKTNDAAVD 147

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T RE+  +  + EG ++ EI+  L +S  T+ N+I++I+ K + + R+    YA+R+
Sbjct: 148 PAITPRELAIMKLVGEGLSNKEISEELSLSVGTIKNHISAILDKLSLRDRTQLAIYAIRH 207

Query: 244 NIV 246
           N+V
Sbjct: 208 NVV 210


>gi|226357105|ref|YP_002786845.1| response regulator NarL [Deinococcus deserti VCD115]
          Length = 216

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 78/219 (35%), Gaps = 15/219 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +D    +   + +L E  G    + V  +    ++     +   P  ++  + +
Sbjct: 3   MIRVLLVDDHALFRQGLRSLLESEG----MRVIGEASNGREAIRYAADTHPDVILMDIQM 58

Query: 93  SEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            E D                 +   ++                Y     D A +   +  
Sbjct: 59  PELDGVKATQSILEIDPNARVIMITMYRQDRYVFEAVKAGARGYILKDADAATLIDAITR 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     ++  D      +L  ++    K  ++   K  +L  RE   L  +++G ++ +I
Sbjct: 119 VAAGEALLDAD--MAQNVLDDFRD---KREELPSEKHADLNERETMILKLLAQGFSNQDI 173

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A+ L IS  TV N ++ I  K     R+ A  YA+R  I
Sbjct: 174 ALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 212


>gi|241205631|ref|YP_002976727.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859521|gb|ACS57188.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 241

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 82/236 (34%), Gaps = 31/236 (13%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
               I     V     +  L    G     + L +      +     V + +P   V   
Sbjct: 13  AFEQIKAAANVDAA--IRILQTEYGLDFVTYHLAQTIAA--KIDSPFVRTTYPDAWVSRY 68

Query: 91  ALSEKDKYYNVLQRPTELFCPV----FHTLPEN-----ITPPAGMDNRYCSLTFDVARIR 141
            L+   K   ++++  E   P         PE           G+     S+       R
Sbjct: 69  LLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQR 128

Query: 142 IGLMLLFPKG---------RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGRE 190
             L+ L  +          R    + +    L+     +    Y++H   D    L+ RE
Sbjct: 129 RALLSLNARIPAEEWTELVRRCRNEWIEIAHLI-----HRKAVYELHGENDPVPSLSPRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +ECL W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 184 IECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|118470159|ref|YP_884886.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171446|gb|ABK72342.1| transcriptional regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 272

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 11/177 (6%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           LL  +D    + +   +++     L++            V+    +    +       + 
Sbjct: 93  LLASFDATMPRVILLNMATRDSATLLKQALALGPHTRVVVIGIAEDDESAIVACAEAGVA 152

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                      L   + ++ +G  L  PK   IL   L  +  LAA +            
Sbjct: 153 GYHSRSESLDELLELIHKVAVGETLCSPKVSAIL---LRRLSTLAAQREPAPT------- 202

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +  LT RE+E L  +  G+T+ EIA  L I+ +TV +++ +++ K    TR+ A A
Sbjct: 203 -ELVLTRREIEILRMLEAGRTNREIAEQLCIAVHTVKSHVHNLLAKLGVSTRAQAAA 258


>gi|282860391|ref|ZP_06269457.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282564127|gb|EFB69663.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 222

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 12/195 (6%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHT 115
           + V  +     +   +V+   P   +  + +   D      +      R   L    F  
Sbjct: 27  MTVVAEAADGTEAVHLVARHQPDVALMDIRMPGLDGIEATRRILTSGARTRVLIVTTFDL 86

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                       + +         +  G+  +     ++         LL AY  ++  +
Sbjct: 87  DEYAHDGLRAGASGFLVKDAMPEELLSGIRAVASGDAVVAPSLTRR--LLDAYAHHLPST 144

Query: 176 YDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 ++      LT RE E LT I +G T+ EIA  L ++ +TV  ++  I+ KT ++
Sbjct: 145 PGARPERENPRIASLTEREREILTVIGQGWTNTEIATRLHLAESTVKTHVTRILAKTGSR 204

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 205 DRVQAVILAYDTRLV 219


>gi|255523270|ref|ZP_05390241.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
 gi|296186229|ref|ZP_06854634.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|255513138|gb|EET89407.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
 gi|296049497|gb|EFG88926.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 882

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHWG 181
                + F+   IRI L+      +I+L+  +  +        +  Y   +   Y     
Sbjct: 760 REALIIGFENGFIRIFLLKQVKANKILLK-TIKSMKFNKDYYKMGEYLNKILSLYSTEEN 818

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  ++ RE E L  I  G  + EIA  L I+ +T  ++I +I  K   + R  A+A A 
Sbjct: 819 SEI-ISKREKEVLMLIESGAKNSEIAKALFITESTTKSHILNIFSKLGVRNRIQAVAKAK 877

Query: 242 RNNIV 246
              I+
Sbjct: 878 EIGII 882


>gi|240080653|ref|ZP_04725196.1| NarL/NarP [Neisseria gonorrhoeae FA19]
 gi|240123586|ref|ZP_04736542.1| NarL/NarP [Neisseria gonorrhoeae PID332]
 gi|268596776|ref|ZP_06130943.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268682215|ref|ZP_06149077.1| two-component system response regulator [Neisseria gonorrhoeae
           PID332]
 gi|268550564|gb|EEZ45583.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268622499|gb|EEZ54899.1| two-component system response regulator [Neisseria gonorrhoeae
           PID332]
          Length = 218

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 9/121 (7%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF 184
              Y     +   +   +        +   +   ++   L++   A   ++         
Sbjct: 99  ARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSS------ 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 -LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211

Query: 245 I 245
           +
Sbjct: 212 V 212


>gi|229030955|ref|ZP_04186971.1| Two-component protein Kinase [Bacillus cereus AH1271]
 gi|228730302|gb|EEL81266.1| Two-component protein Kinase [Bacillus cereus AH1271]
          Length = 592

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN +          E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117
             +V       Q +D +     P  ++  + +   D       + Q+   +   +F T  
Sbjct: 407 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQ 463

Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +    +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTEQAVESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|296138645|ref|YP_003645888.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026779|gb|ADG77549.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 223

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 8/155 (5%)

Query: 97  KYYNVLQRPTELFCPVFHTL------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
              +   R      PVF  L       + I         Y + T     +   +  +   
Sbjct: 69  GVTDGAPRARLEKTPVFLALSVSDAAEDVIATIRAGARGYVTKTISGPELADAVRRVA-D 127

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  +   RL    +L ++             +   LT RE+E L  ++ G T  EIA  L
Sbjct: 128 GDAVFSPRLAGF-VLDSFTGRSPVPEPALDPELDSLTPRELEVLRLLARGYTYREIAEDL 186

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS  TV  + ++++RKT    R+    +A   ++
Sbjct: 187 FISVKTVETHASNVLRKTQQSNRNALTRWAHTRHL 221


>gi|254412965|ref|ZP_05026737.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180129|gb|EDX75121.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 216

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 77/191 (40%), Gaps = 7/191 (3%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           +Y+    + ++  +  +E     +++ D P  ++  + + E D Y  +++   +   P  
Sbjct: 27  DYLEFRGYDVITAENGREALD--VLAQDIPDMIICDVMMPEMDGYA-LVEYVRQ--DPSM 81

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA--N 171
           + +P       G  N         A + +       +    +   L +   L        
Sbjct: 82  NWVPVLFLSAKGQSNDRVKGLNTGADVYMVKPFEPEELVAQVESSLRQASRLTTRPQTPG 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                ++    + ELT  E++ + +++ G  + EIA  L +S+ T+ +++++++ KT   
Sbjct: 142 GEPPSNIQVPANVELTPTELKVVQFVARGLANREIAQELNVSQRTIESHVSNMLGKTGLH 201

Query: 232 TRSGAIAYAVR 242
            R+    +A+ 
Sbjct: 202 NRTELARWAIE 212


>gi|126348096|emb|CAJ89817.1| putative LuxR-family regulator [Streptomyces ambofaciens ATCC
           23877]
          Length = 987

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G+++ +I   L IS  T + ++++I+ K    +R+ A+A A R  +
Sbjct: 919 LTAREQDVLRLLALGRSNRQIGEELFISAKTASVHVSNILAKLDAASRTEAVAVAYRQGL 978

Query: 246 V 246
           V
Sbjct: 979 V 979


>gi|126173479|ref|YP_001049628.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|125996684|gb|ABN60759.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
          Length = 216

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N +      + ++   +  +   G +I    L ++            +  V   ++ 
Sbjct: 102 AGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQMS-------EPKPAPSVGVTRNE 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L++++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   ++  
Sbjct: 155 LLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLA 214

Query: 245 IV 246
           ++
Sbjct: 215 LI 216


>gi|297194274|ref|ZP_06911672.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152196|gb|EDY64473.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 256

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 7/171 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V+ D    L+  +  +       V   P  L    F              + +     
Sbjct: 90  DVVAMDVRMPLMDGIEATRAVLR-TVDDPPKILVVTTFENDEYVYEALRAGADGFLLKRA 148

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A I   + L+     ++    +  +       A    S      +   LT RE   L 
Sbjct: 149 RPAEIVHAVRLVAEGESLLFPAAVRSLA------AEYGNSAARTAMERAALTEREAAVLR 202

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 203 LMARGLSNSEIAAQLFVGTETVKTHVSAVLAKLGARDRTQAVIAAYESGFV 253


>gi|268316568|ref|YP_003290287.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
 gi|262334102|gb|ACY47899.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
          Length = 211

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKG-----RIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
           DN++             L    P+      RI+ +   W    +A     +F+       
Sbjct: 86  DNQHILEAIQAGASGYLLKRDLPEHLISAIRIVHQGGSWMSAGVARRALELFRHQLAPAA 145

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +LT RE E L  ++ G ++ EIA  L +S  TV  +I  I RK   + R+ A++  +
Sbjct: 146 ALQQLTPREQEVLHLLARGLSNAEIAERLYLSIETVRTHIRHIYRKLQARNRAEAVSRLL 205

Query: 242 RN 243
           +N
Sbjct: 206 QN 207


>gi|254390921|ref|ZP_05006131.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704618|gb|EDY50430.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 242

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 7/161 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++  ++    +     L    F      +         +         +   L ++   
Sbjct: 78  GIAATEQLTRQVPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELVTALHVVHTG 137

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGKTSDE 205
             ++    L    L+++Y     +      G         LT RE E    I+ G  +  
Sbjct: 138 EAVVAPRLLTR--LISSYVTVPQRPATPAAGTGPTGVPDGLTPREREVWRLIAAGLDNTG 195

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  + +S +TV N+I ++  K   + R+ A+  A    +V
Sbjct: 196 IAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 236


>gi|78048691|ref|YP_364866.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926244|ref|ZP_08187599.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78037121|emb|CAJ24866.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543331|gb|EGD14759.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 254

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------AAYQANMFKSYDVHWGK--D 183
           ++   +                    RL E  +L       A+QA   +  +    +   
Sbjct: 130 TVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQVLPFLLLAHAFQARAQELLEPQERRCHH 189

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +  
Sbjct: 190 IALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249

Query: 244 NIV 246
            ++
Sbjct: 250 RLL 252


>gi|28378203|ref|NP_785095.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254556410|ref|YP_003062827.1| response regulator [Lactobacillus plantarum JDM1]
 gi|28271038|emb|CAD63943.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254045337|gb|ACT62130.1| response regulator [Lactobacillus plantarum JDM1]
          Length = 217

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              D +      L+ RE E    ++ G ++ EIA  L IS  TV  + A+IMRK A   R
Sbjct: 143 NGVDTNLTGYNGLSKREREVFPLVALGYSNKEIAAKLFISTKTVEAHKANIMRKLALNNR 202

Query: 234 SGAIAYAVRNNIV 246
           +  I YA+ ++++
Sbjct: 203 ADLIRYAIHHHLI 215


>gi|326445496|ref|ZP_08220230.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 244

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 7/161 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++  ++    +     L    F      +         +         +   L ++   
Sbjct: 80  GIAATEQLTRQVPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELVTALHVVHTG 139

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGKTSDE 205
             ++    L    L+++Y     +      G         LT RE E    I+ G  +  
Sbjct: 140 EAVVAPRLLTR--LISSYVTVPQRPATPAAGTGPTGVPDGLTPREREVWRLIAAGLDNTG 197

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  + +S +TV N+I ++  K   + R+ A+  A    +V
Sbjct: 198 IAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 238


>gi|294102849|ref|YP_003554707.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617829|gb|ADE57983.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 223

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     +  +  L   +  I  G M L P              ++  Y   
Sbjct: 95  VAEMLKAGASGFLLKECAFQELAEAIRSIIKGKMYLSPSISKC---------VIEEYVGF 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +      H   +  L+ RE E L  I+EGK + +IA  L IS  TV  +  +IMRK    
Sbjct: 146 LSGDEKEHTDSESALSHREKEVLQLIAEGKANRDIAKTLHISVKTVETHKYNIMRKINLH 205

Query: 232 TRSGAIAYAVRNNI 245
           + +    YA+++ +
Sbjct: 206 SVAELTKYAIKSGL 219


>gi|291298173|ref|YP_003509451.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567393|gb|ADD40358.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 220

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 5/158 (3%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +  + +      L     +    +              + +     + A +   +    
Sbjct: 62  GIEAARRIAARPELASVRVVMLTNYGFDEYVYNALRAGASGFLVKDIEPAELLHAVRQAA 121

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                +  D      L+  + +       V    D  LT RE E +   ++G  ++EIA 
Sbjct: 122 RGDAPLSPDVARR--LMRDFASRPLSPNPVD---DERLTNREREVVVLAAQGLNNEEIAE 176

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  T   +I+  M K A + R+  + YA  + ++
Sbjct: 177 RLVISPTTAKTHISRAMIKLACRDRTQLVVYAYESGLI 214


>gi|187922148|ref|YP_001893790.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713342|gb|ACD14566.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 206

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  ++ CLTW++ GKTS EIA ILG S  TV+ +I   M+     +R+ A  YA    I
Sbjct: 144 LTPCQIVCLTWVARGKTSAEIAKILGRSHYTVDYHIGKAMQALNMCSRTAAAVYASVQGI 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|322831866|ref|YP_004211893.1| LuxR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167067|gb|ADW72766.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602]
          Length = 216

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 48/94 (51%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R ++R   +     A+Y  N   ++     ++  LT RE E L  +  G ++ EI
Sbjct: 117 LVEGIRSVIRGECYFSQGFASYLINQSGAFRHLHSEETGLTHREKEILNKLRVGASNTEI 176

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           A +L IS NTV  ++ ++ RK + K R+ A ++A
Sbjct: 177 ARLLFISENTVKTHLYNLFRKISVKNRTQAASWA 210


>gi|284031285|ref|YP_003381216.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283810578|gb|ADB32417.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 11/222 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D        + A+   +G+   + V  +     +   +V    P   V  + +
Sbjct: 1   MIRVLLADDEAMVRAGVRAI---LGSDDSIEVVAEAGDGAEAVELVQKHRPDVAVLDIRM 57

Query: 93  SEKDKYYNVLQRPT---ELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLML 146
              D      +           +  T  E+      + +    +   + D   +  GL  
Sbjct: 58  PRMDGLAAGAEIRRTAPGTAVVILTTFSEDAYIAKALGDGASGFLLKSGDPRELIAGLKA 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSD 204
           +      +       +           +       KD    L+ RE+E L+ +  G ++ 
Sbjct: 118 VAEGAAYLSPKVAQRVIAELGAGTGGGRMARAAAAKDQVDVLSPRELEVLSLVGAGLSNA 177

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +   TV  Y+++++ +   K R  A   A    +V
Sbjct: 178 EIAARLFLVEGTVKAYVSAVLTRLGVKNRVQAAIIAYEAGLV 219


>gi|145594340|ref|YP_001158637.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303677|gb|ABP54259.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 230

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 3/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F              + +         +   + ++     +I  +    +  
Sbjct: 88  PAVLILTTFDRDDYLFAALRAGASGFLLKNGTPEALVAAIRVVARGEGLIAPELTRRVIA 147

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             A       +  V      +LT RE E L  ++ G ++ EIA  L +   TV  +++ +
Sbjct: 148 AFARPGGEPTTTAVALS---DLTPREHEVLVLVASGASNAEIAANLRLGEATVKTHVSRV 204

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  + +V
Sbjct: 205 LAKLGLRDRVQAVVFAYEHGVV 226


>gi|59801167|ref|YP_207879.1| NarL/NarP [Neisseria gonorrhoeae FA 1090]
 gi|194098688|ref|YP_002001750.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945]
 gi|239998996|ref|ZP_04718920.1| NarL/NarP [Neisseria gonorrhoeae 35/02]
 gi|240112982|ref|ZP_04727472.1| NarL/NarP [Neisseria gonorrhoeae MS11]
 gi|240125768|ref|ZP_04738654.1| NarL/NarP [Neisseria gonorrhoeae SK-92-679]
 gi|240128290|ref|ZP_04740951.1| NarL/NarP [Neisseria gonorrhoeae SK-93-1035]
 gi|254493787|ref|ZP_05106958.1| two-component system response regulator [Neisseria gonorrhoeae
           1291]
 gi|260440452|ref|ZP_05794268.1| NarL/NarP [Neisseria gonorrhoeae DGI2]
 gi|268594844|ref|ZP_06129011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599062|ref|ZP_06133229.1| two-component system response regulator [Neisseria gonorrhoeae
           MS11]
 gi|268684366|ref|ZP_06151228.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686687|ref|ZP_06153549.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043751|ref|ZP_06569467.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399036|ref|ZP_06643201.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria gonorrhoeae F62]
 gi|59718062|gb|AAW89467.1| putative nitrite/nitrate two-component system transcriptional
           response regulator [Neisseria gonorrhoeae FA 1090]
 gi|193933978|gb|ACF29802.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945]
 gi|226512827|gb|EEH62172.1| two-component system response regulator [Neisseria gonorrhoeae
           1291]
 gi|268548233|gb|EEZ43651.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583193|gb|EEZ47869.1| two-component system response regulator [Neisseria gonorrhoeae
           MS11]
 gi|268624650|gb|EEZ57050.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626971|gb|EEZ59371.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012214|gb|EFE04203.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610450|gb|EFF39560.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria gonorrhoeae F62]
 gi|317164288|gb|ADV07829.1| NarL/NarP [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 218

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 9/121 (7%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF 184
              Y     +   +   +        +   +   ++   L++   A   ++         
Sbjct: 99  ARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSS------ 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 -LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211

Query: 245 I 245
           +
Sbjct: 212 V 212


>gi|167766736|ref|ZP_02438789.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1]
 gi|167711490|gb|EDS22069.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1]
          Length = 222

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 68/173 (39%), Gaps = 6/173 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V  D P  ++  + + E D       + ++  ++   +  T  ++      +    + Y 
Sbjct: 43  VRKDKPDVILMDVRMPEMDGVQCTQIIKEQYPDVKIIILTTFDDDEYVYNALKHGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                +  +   +  +   G +I  +   ++    +  A       +H     E+T  E 
Sbjct: 103 LKGISMDELEKAINTVHSGGAMINPEVATKVVDFFSEMAQSNYDTSIHAQNVEEITDAEW 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E +  +  G ++ EI+  L +S  TV NY+++I+ K   + R+    + V++ 
Sbjct: 163 EIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQLAIWEVQSG 215


>gi|325202056|gb|ADY97510.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240149]
 gi|325208190|gb|ADZ03642.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           NZ-05/33]
          Length = 218

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|325130303|gb|EGC53070.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           OX99.30304]
 gi|325136264|gb|EGC58872.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M0579]
          Length = 218

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 76/222 (34%), Gaps = 18/222 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +  ++I +D    +   + AL     G          L   + +  +     P  ++  +
Sbjct: 1   MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL----QPDVVLLDL 56

Query: 91  ALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +   +    + Q      +   +   V     +           Y     +   +   +
Sbjct: 57  DMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLTECIRIGARGYLLKNINADFLLESI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
                   +   +      + A    ++         +    LT RE+E L +++ G ++
Sbjct: 117 RKAAEGDNVFSPE------MTAKLVKSLISPQSTQGTQALSSLTPRELEILGYLAAGHSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 171 KIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|304404571|ref|ZP_07386232.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304346378|gb|EFM12211.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 11/168 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARI 140
            DL              + ++  EL   V     ++             Y         +
Sbjct: 53  MDLSMPHGKDGLTATSELKEKLPELAILVLTMHDDDEYLFRAIHAGAAGYVLKNAPHEEL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWIS 198
              +  +      +         L+  Y   M +  S DV+      L+ RE E L   +
Sbjct: 113 LTAIRSVARGDAYLYPTATKR--LMNDYVERMKRGESGDVYHS----LSDREKEVLGLTA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G  + EIA  L IS  TV  + +++M K   KTR   I YA++  ++
Sbjct: 167 KGYANKEIAEQLVISVKTVETHKSNVMEKLGLKTRPELIKYAMKKGLL 214


>gi|312196246|ref|YP_004016307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227582|gb|ADP80437.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 230

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +R+G  LL P     L +R       AA    
Sbjct: 97  VYAALTAGASGFLLKDVSPEHLVAAVRLVRMGDALLAPAITRRLVERFASRDSGAARLHR 156

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          LT RE+E L ++++G ++ E+A    +S  TV  ++A I+ K   +
Sbjct: 157 DLSA----------LTPRELEVLEFLAQGLSNAELAARFQLSEATVKTHVARILAKLQVR 206

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    ++
Sbjct: 207 DRAQAVIVAYETGLI 221


>gi|167031823|ref|YP_001667054.1| ATP-dependent transcription regulator LuxR [Pseudomonas putida
           GB-1]
 gi|166858311|gb|ABY96718.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pseudomonas putida GB-1]
          Length = 905

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 125 GMDNRYCSLTFDVARIRIGLML--LFPKGRIILRDRLWEIGLL---AAYQANMFKSYDVH 179
           G   +      + A   +      L  K    L ++L         A    ++       
Sbjct: 778 GQAAQLLPGLLEAAHGGVLQPFQPLLEKHPQWLHEQLQPAAACPVQAELLKHLPPVPTAS 837

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G    L+GRE+  L  I++G ++ +I+  L IS +TV  + + I  K   + R+ A+A 
Sbjct: 838 TGTGEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVERRTQAVAK 897

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 898 AKTLGLL 904


>gi|29833613|ref|NP_828247.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610737|dbj|BAC74782.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 220

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 72/195 (36%), Gaps = 6/195 (3%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +        L ++ + D +V+ D    L+  +  +        + RP ++    
Sbjct: 28  IEVVGEAADGAAVIPLVRQLRPD-VVAMDVRMPLMDGIEATR--AVLRTVDRPPKILVVT 84

Query: 113 -FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            F              + +       A I   + L+     ++    + ++         
Sbjct: 85  TFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEHGDGGG 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +  V   +   LT RE E L  ++ G ++ EIA  L +   TV +++++++ K   +
Sbjct: 145 NRAARAVM--ERAALTDREGEVLRLMARGLSNAEIAGQLVVGTETVKSHVSAVLAKLGAR 202

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A  +  V
Sbjct: 203 DRTQAVIAAYESGFV 217


>gi|15677121|ref|NP_274273.1| LuxR family transcriptional regulator [Neisseria meningitidis MC58]
 gi|218768252|ref|YP_002342764.1| putative two-component system response regulator [Neisseria
           meningitidis Z2491]
 gi|7226490|gb|AAF41630.1| transcriptional regulator, LuxR family [Neisseria meningitidis
           MC58]
 gi|121052260|emb|CAM08585.1| putative two-component system response regulator [Neisseria
           meningitidis Z2491]
 gi|325140520|gb|EGC63041.1| transcriptional regulatory protein DegU [Neisseria meningitidis
           CU385]
          Length = 218

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|320333040|ref|YP_004169751.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754329|gb|ADV66086.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 220

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 6/157 (3%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           M  ++  + ++    P  +    F    + +       + Y     D+  +   +  +  
Sbjct: 69  MDGAQATRAFHARGGPPVILMTTFDEPEDMVAGLQAGASGYLFKNVDIHELHDAMRRVRA 128

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             R+I       +    A    +  +  V       LT RE   L  +S G ++ +IA  
Sbjct: 129 GERVIHP----RVAQAVADAEAVDAAPGVTL--QAPLTAREQAILGALSAGASNKQIAQR 182

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LGIS  TV  +++++  K     R+ A+  A +  ++
Sbjct: 183 LGISDGTVKTHLSNLFFKLGAANRTEAVYRARQLRLL 219


>gi|315271311|gb|ACO47091.2| putative response regulator, NarL [Deinococcus deserti VCD115]
          Length = 214

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 78/219 (35%), Gaps = 15/219 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +D    +   + +L E  G    + V  +    ++     +   P  ++  + +
Sbjct: 1   MIRVLLVDDHALFRQGLRSLLESEG----MRVIGEASNGREAIRYAADTHPDVILMDIQM 56

Query: 93  SEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            E D                 +   ++                Y     D A +   +  
Sbjct: 57  PELDGVKATQSILEIDPNARVIMITMYRQDRYVFEAVKAGARGYILKDADAATLIDAITR 116

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     ++  D      +L  ++    K  ++   K  +L  RE   L  +++G ++ +I
Sbjct: 117 VAAGEALLDAD--MAQNVLDDFRD---KREELPSEKHADLNERETMILKLLAQGFSNQDI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A+ L IS  TV N ++ I  K     R+ A  YA+R  I
Sbjct: 172 ALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210


>gi|240142577|ref|YP_002967090.1| hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens
           AM1]
 gi|240012524|gb|ACS43749.1| Hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens
           AM1]
          Length = 296

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE + L W + GKT+ E A+ILG+S  TVN+++    +K     ++ A+A A+   +
Sbjct: 234 LSGRERDVLAWAAHGKTAGETALILGLSMETVNHHLGKAQKKLMAANKTHAVAIAINRGV 293

Query: 246 V 246
           +
Sbjct: 294 I 294


>gi|238749708|ref|ZP_04611213.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380]
 gi|238712363|gb|EEQ04576.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380]
          Length = 244

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 82/237 (34%), Gaps = 62/237 (26%)

Query: 60  HFLLVRWDLFQEQKLDSIVS-----------SDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           +++  R   + + +   +V            S++P D VR     +K+ Y+        L
Sbjct: 17  NYIQRRIKAYGDLRYSYLVMNKKIPLHPAIISNYPLDWVREY---QKNSYH--------L 65

Query: 109 FCPVFHTLPENITPPAGMDN-----------------------RYCSLTFDVARIRIGLM 145
             PV  T  + I+P +  DN                        Y  +  D +     L 
Sbjct: 66  IDPVILTARDKISPFSWDDNSVINKKSTESAVFKLAREYNIVNGYTFVLHDNSNNMATLN 125

Query: 146 LLFPKGRIILRDR--------------LWEIGLLAAYQANMFKSYDVHWG--KDFELTGR 189
           +       I  D               L    +L  Y  N     ++H    K    + R
Sbjct: 126 ISNGNDDSIFFDENIEKYKEKIQMLLILTHEKMLGLYHNNSIN-NELHGSNIKKDIFSPR 184

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W S GKT  EI++IL I R+TV  +I +++RK        AI   +   ++
Sbjct: 185 ENEILYWASVGKTYSEISIILEIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|284028851|ref|YP_003378782.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808144|gb|ADB29983.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 252

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 13/189 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGMD 127
           ++    +V  D    ++  +  +E+    N      RP  L    F      ++      
Sbjct: 53  DRFDPDVVLMDIRMPVMDGLVATERITRANQEAGRSRPAVLVLTTFDDEAYVLSAVRAGA 112

Query: 128 NRYCSLTFD-------VARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDV 178
           + +     D       V  +  G  L+ P    +L +R  E+   + A   A    + D 
Sbjct: 113 SGFLLKDTDPDLLVAAVRAVHRGDSLVDPASTRVLLERCVELERQVGADPVAAAPHAADG 172

Query: 179 HW-GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            W G   +L+ RE + L W++ G ++ ++A  L +S  TV  +++S++ K    +R  A+
Sbjct: 173 RWTGLLAQLSERERDVLVWMARGLSNRDLANKLFVSETTVKTHVSSVLSKLGLSSRVQAV 232

Query: 238 AYAVRNNIV 246
             A    +V
Sbjct: 233 VVAYEAGVV 241


>gi|329937029|ref|ZP_08286658.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329303636|gb|EGG47521.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 224

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+  +   +    +V    D  LT RE E L  I+EG +S EIA  L IS  TV  + A
Sbjct: 142 ALIRNFLDRVRSGEEVS---DSVLTPREEEVLKLIAEGHSSKEIADTLFISIKTVQRHRA 198

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K   + R     YA+R  +V
Sbjct: 199 NLLHKLGLRDRLELTRYAIRAGLV 222


>gi|259418825|ref|ZP_05742742.1| response regulator receiver protein [Silicibacter sp. TrichCH4B]
 gi|259345047|gb|EEW56901.1| response regulator receiver protein [Silicibacter sp. TrichCH4B]
          Length = 151

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE + L+ ++EGK +  IA  LG+S +TV  +I  ++ K     R+ A  + + 
Sbjct: 83  NIRLTTREAQVLSCVAEGKQNKLIANRLGLSEHTVKLHIHHVIAKLGVNNRTEAAVWFLE 142

Query: 243 NN 244
           N+
Sbjct: 143 NH 144


>gi|157157590|ref|YP_001464190.1| LuxR family transcriptional regulator [Escherichia coli E24377A]
 gi|209920305|ref|YP_002294389.1| hypothetical protein ECSE_3114 [Escherichia coli SE11]
 gi|300815723|ref|ZP_07095947.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300820647|ref|ZP_07100798.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300906614|ref|ZP_07124305.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|301302994|ref|ZP_07209121.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|309793907|ref|ZP_07688332.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|331678834|ref|ZP_08379508.1| putative 2-component transcriptional regulator [Escherichia coli
           H591]
 gi|157079620|gb|ABV19328.1| transcriptional regulator, LuxR family [Escherichia coli E24377A]
 gi|209913564|dbj|BAG78638.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|300401653|gb|EFJ85191.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300526911|gb|EFK47980.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300531652|gb|EFK52714.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300841658|gb|EFK69418.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|308122314|gb|EFO59576.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|315256718|gb|EFU36686.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1]
 gi|323160002|gb|EFZ45966.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|323162555|gb|EFZ48405.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|323163404|gb|EFZ49231.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|324021194|gb|EGB90413.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3]
 gi|331073664|gb|EGI44985.1| putative 2-component transcriptional regulator [Escherichia coli
           H591]
          Length = 148

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 74  EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 133

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 134 IELIKTALRMGV 145


>gi|15805916|ref|NP_294615.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6458612|gb|AAF10469.1|AE001942_1 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 194

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L  +L EI  +A  + +     DV       LT RE E L  ++ G ++ EIA  LG+S 
Sbjct: 109 LARQLREI--VAHPEVDRLPQVDVPR-----LTPRESEVLPLLARGFSNKEIARDLGVSP 161

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV +++A +  K     R+ A++ A    ++
Sbjct: 162 DTVKDHLARLYSKLNAGDRTEAVSRARSIGLL 193


>gi|307326772|ref|ZP_07605964.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887535|gb|EFN18529.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 206

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 18/140 (12%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           E    +   +          D     L   V     G  +L P     L D+L +     
Sbjct: 85  ETDGDILRAVEAGAAGYLLKDMARAELAEAVRSAARGETVLAPSVAARLMDQLRD----- 139

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                          +   L+ RE   L  +++G T+ EI   L I  +TV  ++     
Sbjct: 140 -------------RPERPRLSERETAVLRLVAQGCTNAEIGRRLFIGESTVKTHLLRAFG 186

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K     R+ A+  A+R  ++
Sbjct: 187 KLGVDDRTAAVTSAMRLGLL 206


>gi|290958798|ref|YP_003489980.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260648324|emb|CBG71435.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 256

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D R   L   V  +  G  LL P     +  RL E      Y   
Sbjct: 102 VYEALHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPS----VARRLVE-----QYTRP 152

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   LTGRE E L  ++ G ++ EIA  L +S +TV  ++ +++ K   +
Sbjct: 153 PAARAPRPDPRLGLLTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLR 212

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    ++
Sbjct: 213 DRVQAVICAYETGLI 227


>gi|89109637|ref|AP_003417.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|170082422|ref|YP_001731742.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|256024645|ref|ZP_05438510.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B]
 gi|307139537|ref|ZP_07498893.1| DNA-binding transcriptional regulator [Escherichia coli H736]
 gi|85675670|dbj|BAE76923.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|169890257|gb|ACB03964.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|326339074|gb|EGD62889.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. 1044]
 gi|326343044|gb|EGD66812.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. 1125]
          Length = 147

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 73  EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 132

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 133 IELIKTALRMGV 144


>gi|295394380|ref|ZP_06804604.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972732|gb|EFG48583.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 221

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           L    +     D R   L   + +  +G  ++ P        RL E  + A         
Sbjct: 101 LRSGASGFLLKDARPEVLLDSIRQAHVGGAVIAPTTTR----RLLETVVAAPTV------ 150

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D H  K   LT RE E    ++ GK++ EIA  L ++  TV  +++ I+ K   + R  
Sbjct: 151 PDEHAQKLERLTAREREVFELVARGKSNAEIAGELFMAGPTVKTHVSHILTKLEVRDRIH 210

Query: 236 AIAYAVRNNIV 246
           A+ +A    +V
Sbjct: 211 AVIFAYEAGVV 221


>gi|119489708|ref|ZP_01622467.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC
           8106]
 gi|119454445|gb|EAW35594.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC
           8106]
          Length = 100

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 41/62 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE++ +  I+ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   +++A++
Sbjct: 9   PVSLSDRELQVVDLIATGLTNQEIAEQLEISKRTVDNHISNILTKTETENRVALVSWALK 68

Query: 243 NN 244
           + 
Sbjct: 69  SG 70


>gi|91787249|ref|YP_548201.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696474|gb|ABE43303.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 349

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F+LT RE E L W+ +GK + +IA ILG S  TV  ++  +  K   +TR+ A   A+  
Sbjct: 280 FKLTAREAEVLYWVIKGKINRDIAGILGASPATVKKHLEHVYAKLGVETRTAAAGMALNR 339


>gi|262204346|ref|YP_003275554.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087693|gb|ACY23661.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 213

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 78/208 (37%), Gaps = 10/208 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +   +   + +    + VG +       +L  E + D +++       +R   +   +  
Sbjct: 14  VREGLRSMLGLLDTLDVVGVAASGEEALELVDETEPDVLLTD------LRMPGIGGVEAI 67

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF-DVARIRIGLMLLFPKGRIILRD 157
             ++   +        T  ++ T  A +          D     I   L+       L  
Sbjct: 68  SRLVASGSSTRAVALTTYDDDATILAALSAGALGFLNKDADPETIEAALVSAAAGRSL-- 125

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            L E  L A                   LT REVE +  I+EG ++ +IA  L +S +TV
Sbjct: 126 -LDEKALRALMSRGRSADDPPRRTPPDGLTEREVEVIALIAEGLSNQQIATRLVVSLSTV 184

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +I  I+ KTA + R+  ++YA R+++
Sbjct: 185 KTHINHILAKTACRDRAALVSYAFRHHL 212


>gi|77459645|ref|YP_349152.1| sensor protein [Pseudomonas fluorescens Pf0-1]
 gi|77383648|gb|ABA75161.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 496

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 6/175 (3%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCS 132
           LD I   D P +  R +A  EK    + +  R       +        T        Y  
Sbjct: 316 LDFI---DEPAERARLLAALEKTGRVDRVDMRIRRKDAELLECAMSADTVNIQDAVCYLL 372

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGRE 190
           +  D+   +   + L      +++D  W    L    AN+ K  S  +      +LT RE
Sbjct: 373 VLMDITERKRTELELVAAIEEVMKDASWFSRTLIEKLANVKKVNSPQLPSVSFTDLTARE 432

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A    +
Sbjct: 433 RDVLALICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIVWARERGL 487


>gi|257482151|ref|ZP_05636192.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289625831|ref|ZP_06458785.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647709|ref|ZP_06479052.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330987557|gb|EGH85660.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 77

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + 
Sbjct: 16  NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75


>gi|121634943|ref|YP_975188.1| putative two-component system response regulator [Neisseria
           meningitidis FAM18]
 gi|254805030|ref|YP_003083251.1| putative two-component system response regulator [Neisseria
           meningitidis alpha14]
 gi|304387489|ref|ZP_07369678.1| nitrate/nitrite response regulator protein NarL [Neisseria
           meningitidis ATCC 13091]
 gi|120866649|emb|CAM10400.1| putative two-component system response regulator [Neisseria
           meningitidis FAM18]
 gi|254668572|emb|CBA06069.1| putative two-component system response regulator [Neisseria
           meningitidis alpha14]
 gi|254670104|emb|CBA05041.1| putative two-component system response regulator [Neisseria
           meningitidis alpha153]
 gi|304338376|gb|EFM04497.1| nitrate/nitrite response regulator protein NarL [Neisseria
           meningitidis ATCC 13091]
 gi|325132566|gb|EGC55259.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M6190]
 gi|325138339|gb|EGC60908.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           ES14902]
          Length = 218

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 76/222 (34%), Gaps = 18/222 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +  ++I +D    +   + AL     G          L   + +  +     P  ++  +
Sbjct: 1   MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL----QPDVVLLDL 56

Query: 91  ALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +   +    + Q      +   +   V     +           Y     +   +   +
Sbjct: 57  DMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLTECIRIGARGYLLKNINADFLLESI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
                   +   +      + A    ++         +    LT RE+E L +++ G ++
Sbjct: 117 RKAAEGDNVFSPE------MTAKLVKSLISPQPAQGTQALSSLTPRELEILGYLAAGHSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 171 KIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|319410499|emb|CBY90860.1| putative two-component system transcriptional regulator protein
           [Neisseria meningitidis WUE 2594]
          Length = 218

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|311898876|dbj|BAJ31284.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 246

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 42/62 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A A+R  
Sbjct: 184 ELSGREVEVLRLVAEGQSNKAIGVAMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTG 243

Query: 245 IV 246
           I+
Sbjct: 244 II 245


>gi|320011210|gb|ADW06060.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 229

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +  +        L     +    F      +       + +     
Sbjct: 51  DVVLMDIRMPGTDGLTATRMISADPDLAGVRIVMLTTFEVDEYVVQSLRAGASGFLGKGA 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190
           +   +   + +      ++    +   GL+A++ A    + +     ++      LTGRE
Sbjct: 111 EPEELLNAIRVAAAGEALLSP--VATKGLIASFLAQGGSAGEGADAAEYAERLAALTGRE 168

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++ G ++D+IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 169 REVLVQVAGGHSNDQIADRLVVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 224


>gi|258651492|ref|YP_003200648.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554717|gb|ACV77659.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 219

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 9/175 (5%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------PENITPPAGMDNRYC 131
           ++S+ P  ++  + + +      + Q  ++L   VF  L       + I         Y 
Sbjct: 48  ITSNPPDVVLLDVHMPDGGGRSVLEQVHSKLPDVVFLALSVSDAAEDVIAVIRAGARGYV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           + T     +   ++ +     +    RL    +L A+      +       D  L+ RE 
Sbjct: 108 TKTISGRELADAIVRVSAGDAVFSP-RLAGF-VLDAFSDRGSPAPITDPELDL-LSPRER 164

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G    EIA  L IS  TV  +++S++RKT    R     +A    +V
Sbjct: 165 EVLKLLARGYAYKEIAAQLFISIKTVETHVSSVLRKTQKSNRYELSRWASDRRLV 219


>gi|284043388|ref|YP_003393728.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283947609|gb|ADB50353.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 535

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 45/89 (50%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           RL     LA  +    +   +  G    L+ RE++ L  ++ G T+  IA  L +S  TV
Sbjct: 447 RLGATPDLARAERVAGRPAGIAAGDLHGLSPRELQVLRLVAAGTTNRAIAAELVLSERTV 506

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++++I+ K    +R+ A AYA  N +V
Sbjct: 507 DRHVSNILAKLRLPSRTAATAYAYENELV 535


>gi|261392488|emb|CAX50039.1| putative two-component system transcriptional regulator protein
           [Neisseria meningitidis 8013]
 gi|308389343|gb|ADO31663.1| putative two-component system response regulator narL [Neisseria
           meningitidis alpha710]
 gi|325128344|gb|EGC51228.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           N1568]
          Length = 218

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|238060490|ref|ZP_04605199.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237882301|gb|EEP71129.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 226

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 2/170 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  + +      L+    +    + T            + +     
Sbjct: 50  DVVIMDIRMPEVDGLTATAEICADPELRTARVVILTTYETDEYVAQALRAGASGFIGKGI 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++         L+A + A   +    H  +   LT RE E + 
Sbjct: 110 GAEDLLDAVRTIAAGDTLLSPAATR--SLVARFLATPDEPAHQHPEQLGVLTAREREMVA 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ G ++ EIA  + +S  TV  ++   M K   + R+  +  A +  +
Sbjct: 168 LVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYQTGL 217


>gi|312200532|ref|YP_004020593.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231868|gb|ADP84723.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 214

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  ELT RE E L  ++ G T+  IA  L +S  TV N+++++  K     R+ A+
Sbjct: 142 SALAPFPELTDREREILDLVARGLTNPAIARRLFLSDKTVRNHVSNVFAKLQVADRAEAV 201

Query: 238 AYAVRNNI 245
           A A    +
Sbjct: 202 ARARDAGL 209


>gi|229021072|ref|ZP_04177731.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
 gi|229024513|ref|ZP_04180960.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228736801|gb|EEL87349.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228740232|gb|EEL90571.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
          Length = 188

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           ++   +  S +   G + E LT  E   L  IS+ KT+ EI+  L IS+ TV  +I+SI+
Sbjct: 105 SHMGYILFSKNQIIGNNIEALTSAEQRILLLISKDKTNYEISTDLSISKRTVEYHISSII 164

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    +R GA+   ++  ++
Sbjct: 165 RKLGVDSRVGAVVKGIKKGLI 185


>gi|284029334|ref|YP_003379265.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808627|gb|ADB30466.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 228

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L        G    Y  L   V R+  G   L     +     +  +   A   + 
Sbjct: 94  VLAALKAGANGFLGKSADYEELRQAVGRVAAGDASLSA---VATNTVVGHLASTARKPSV 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++      +   LT RE E +T ++ G ++D IA  L IS  T   ++   M K    
Sbjct: 151 HEQASAEELRRVDSLTSREREVVTLVARGLSNDVIAEHLFISPMTAKTHVNRAMSKLHVS 210

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A+R  ++
Sbjct: 211 DRAQLVVAALRAGLL 225


>gi|302531199|ref|ZP_07283541.1| predicted protein [Streptomyces sp. AA4]
 gi|302440094|gb|EFL11910.1| predicted protein [Streptomyces sp. AA4]
          Length = 295

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 3/116 (2%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGRE 190
             D  R+   +       R I               +      D    +      L+ RE
Sbjct: 157 AVDSRRLAEAVRRAHHDRRYIDPALSALTARPKREPSPRAAPVDGQLVQPKGAMPLSRRE 216

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  ++EG  +  IA +L +S  TV  ++ SI+RK + + R+ A+  A R+ I+
Sbjct: 217 YQVLQLVAEGLENSGIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFRSGIL 272


>gi|229494594|ref|ZP_04388357.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229318956|gb|EEN84814.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 220

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + +R            V +++P   V  +   + D+Y             VF  L     
Sbjct: 53  MDIRMPHGDGLTATREVLAEFPGTRVIVITTFDLDEY-------------VFEALDSGAA 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                D     L+  V        L   +G  +L  RL    ++   +           G
Sbjct: 100 GFLLKDADPEELSSAV--------LTVAEGGSVLSPRLTSRLIVEFARRKPAPMSTARSG 151

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  L+ RE++ +  +S+G  +++IA  L + ++TV ++I++I +K   +TR   + +A 
Sbjct: 152 SDHGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWAY 211

Query: 242 RNNIV 246
           RNN++
Sbjct: 212 RNNVI 216


>gi|182414741|ref|YP_001819807.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177841955|gb|ACB76207.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 223

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +  +LT RE + L  + +G+++ EIA  L IS +TV +++ ++  K   + R+GA 
Sbjct: 152 TERAQREQLTERERDVLESLIKGRSNKEIASSLCISEDTVKSHLKTLFAKLRVRDRTGAA 211

Query: 238 AYAVRNNIV 246
             A+R+ IV
Sbjct: 212 IEAIRHGIV 220


>gi|119963767|ref|YP_948582.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119950626|gb|ABM09537.1| putative transcriptional regulator, LuxR family [Arthrobacter
           aurescens TC1]
          Length = 544

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A++ +           LT RE+E L  I+ G  +  IA  L +S  TV  ++++I+ K 
Sbjct: 466 AADVLELTGETSVDASPLTSRELEVLRLIAGGNANRTIARELYLSEKTVARHVSNILSKL 525

Query: 229 ATKTRSGAIAYAVRNNIV 246
           A  +R+ A  YA  + ++
Sbjct: 526 AVPSRAAATGYAFEHGLI 543


>gi|47564405|ref|ZP_00235450.1| two-component protein Kinase [Bacillus cereus G9241]
 gi|47558557|gb|EAL16880.1| two-component protein Kinase [Bacillus cereus G9241]
          Length = 592

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN +          E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       Q +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 407 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGVEATKKIKQQWPHIRILIFTTFQ 463

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|325283103|ref|YP_004255644.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324314912|gb|ADY26027.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 233

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 2/165 (1%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +        E  ++        ++  P    +       +        L    A   I 
Sbjct: 68  AEAADGAEALEVCRHLRPTAALLDVKMPGLTGIEVCRQLRSECPEVLSILITTFAEPAII 127

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELTGREVECLTWISEGK 201
                   R  L        L    +A +       +   +   LT RE E L  +++G 
Sbjct: 128 QAAREAGARGYLSKETDPPALATQLRAIIADPTQDRLPRVEVPRLTPRESEVLPLLAQGL 187

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  LG+S +TV +++A +  K     R+ A++ A    ++
Sbjct: 188 SNKEIARELGVSPDTVKDHLARMYGKLDACDRTEAVSRARTIGLL 232


>gi|304409402|ref|ZP_07391022.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307303760|ref|ZP_07583513.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304351920|gb|EFM16318.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306912658|gb|EFN43081.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 216

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N +      + ++   +  +   G +I    L ++            +  V   ++ 
Sbjct: 102 AGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQMS-------EPKPAPSVGVTRNE 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L++++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   ++  
Sbjct: 155 LLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLA 214

Query: 245 IV 246
           ++
Sbjct: 215 LI 216


>gi|297626956|ref|YP_003688719.1| Two-component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922721|emb|CBL57298.1| Two-component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 221

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG +  EIA +L IS  TV  + A+++ K   K R     YA+R  +
Sbjct: 159 LTPREEEILKLIAEGHSGKEIAEMLFISPKTVERHRANLLEKLGMKDRLELTRYAIRVGL 218

Query: 246 V 246
           +
Sbjct: 219 I 219


>gi|148555438|ref|YP_001263020.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148500628|gb|ABQ68882.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 879

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 39/81 (48%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A  Q +  +        +F L+ RE E +  ++EG  + EIAV LGIS  TV  +   I 
Sbjct: 799 ATLQQSSPRRGVEQAPNNFTLSPRETEIIALVAEGYITKEIAVRLGISEGTVKTHRKKIH 858

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K    +RS AIA A    I+
Sbjct: 859 EKLGVASRSQAIARARDLLII 879


>gi|325204234|gb|ADY99687.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240355]
          Length = 218

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|311745099|ref|ZP_07718884.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1]
 gi|126577613|gb|EAZ81833.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1]
          Length = 216

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 7/180 (3%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L Q +K  +I       ++ +   +   +       +   +   VF              
Sbjct: 41  LEQLEKDSNIDLILMDIEMPKMNGIEAVELVSKKYPQIKTIMLTVFDNDEYIFKAVQAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           N Y     D   +  G+      G  +     L  + LL                ++  L
Sbjct: 101 NGYFLKEVDPTTLFKGIKETLEGGAAMTPSVALKTLKLLRN------PPNFEEPKEEITL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T REVE L   S+G   ++I   L IS  TV  +I +I  K    ++  A+  AV+N I+
Sbjct: 155 TKREVEILEQTSKGLNYNQIGENLFISPKTVRKHIENIYHKLQVHSKLEAVQKAVKNRII 214


>gi|328881569|emb|CCA54808.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 218

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 12/178 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP----VFHTLPENITPPAGM---DN 128
           S+V ++ P  ++  + + E D      Q    +  P    V  T   +      +     
Sbjct: 43  SVVRAERPDVVLMDVRMPEIDGIRATEQILAGMAEPPRIVVVTTFENDAYVYDALRVGAA 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +         +   + L+     ++    +     LAA  A         W     LT 
Sbjct: 103 GFLLKRAAAEELVSAVRLVARSDSLLYPAAVRG---LAAEHARNRPPVAPPWVAR--LTE 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  ++ G T+ EIA  +G+   TV  ++AS++ K+  + R+ A+  A  +  V
Sbjct: 158 REAEVLRLVATGLTNAEIAGRMGVGPATVKTHVASVLAKSGARDRTQAVILAYESGFV 215


>gi|327251604|gb|EGE63290.1| transcriptional regulator, LuxR family protein [Escherichia coli
           STEC_7v]
          Length = 148

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 74  EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 133

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 134 IELIKTALRMGV 145


>gi|312197193|ref|YP_004017254.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228529|gb|ADP81384.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 278

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  ++EG ++ E A  L +S  TV  Y+ SI  K     R+ A+  A R+
Sbjct: 215 YALTQRELEVLGLVAEGLSNAEAAQRLVVSPETVKAYLRSIRSKLGVSNRTAAVTVARRS 274

Query: 244 NIV 246
            ++
Sbjct: 275 GLL 277


>gi|192360157|ref|YP_001981723.1| putative two-component transcriptional regulator, LuxR family
           [Cellvibrio japonicus Ueda107]
 gi|190686322|gb|ACE84000.1| putative two-component transcriptional regulator, LuxR family
           [Cellvibrio japonicus Ueda107]
          Length = 238

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT +E E LTW + G T  +IA  L IS +TV+ ++ + + K   +  + A++ A+  
Sbjct: 174 VHLTAKEQEILTWSAAGYTKSQIAHKLCISVHTVDFHVRNCLAKLEAQNITHAVSRALNL 233

Query: 244 NIV 246
           +++
Sbjct: 234 SLI 236


>gi|161870093|ref|YP_001599263.1| two-component system, NarL family nitrate/nitrite response
           regulator [Neisseria meningitidis 053442]
 gi|161595646|gb|ABX73306.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria meningitidis 053442]
 gi|254673916|emb|CBA09700.1| putative two-component system response regulator [Neisseria
           meningitidis alpha275]
          Length = 218

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|91774802|ref|YP_544558.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91708789|gb|ABE48717.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 244

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 28/234 (11%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P  S LLA ++ ++       R+ ++   +G     +      ++ +      ++ PF L
Sbjct: 24  PPESSLLAPVLLVEDEPLIQRRLDSMLRQLGYQRDAIAFAASLKQARAH---LANQPFAL 80

Query: 87  -VRCMALSEKDKYYNVLQ-------------RPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +  + L +      + +                     +   L    T     +     
Sbjct: 81  ALVDIGLPDGSGIDLIAEMHAADAALPILVISAWSTEDAILAALRAGATGYVLKERDDME 140

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           +   +  +  G   + P    I R  + E  L ++ QA   +           L+ RE E
Sbjct: 141 VVLSIRSVLRGGAPIDP---FIARRIIDEFHLGSSQQAQTQQCE--------TLSPREGE 189

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +++G  + EIA  L +SR TV  +I  I RK A  +R+ A+  A    ++
Sbjct: 190 ILGLVAQGMANREIAEQLHLSRYTVECHIKHIYRKLAVSSRTKAVHEARSRGLL 243


>gi|15803376|ref|NP_289409.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|261226155|ref|ZP_05940436.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256590|ref|ZP_05949123.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|300950599|ref|ZP_07164501.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300958180|ref|ZP_07170334.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|301026137|ref|ZP_07189611.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|301643812|ref|ZP_07243849.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|331643538|ref|ZP_08344669.1| DNA-binding response regulator, LuxR family [Escherichia coli H736]
 gi|12517351|gb|AAG57968.1|AE005514_5 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|887806|gb|AAA83037.1| ORF_f148 [Escherichia coli]
 gi|299879832|gb|EFI88043.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|300315132|gb|EFJ64916.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|300450079|gb|EFK13699.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|301077845|gb|EFK92651.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|315137458|dbj|BAJ44617.1| putative 2-component transcriptional regulator [Escherichia coli
           DH1]
 gi|323935789|gb|EGB32092.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
 gi|331037009|gb|EGI09233.1| DNA-binding response regulator, LuxR family [Escherichia coli H736]
          Length = 148

 Score = 89.3 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 74  EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 133

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 134 IELIKTALRMGV 145


>gi|333028557|ref|ZP_08456621.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332748409|gb|EGJ78850.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 215

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 4/107 (3%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWISE 199
           L+       I+   R+   G    + A + +  D H G+       LTGRE E L  ++ 
Sbjct: 100 LLKRARPAEIVHAVRVVAAGDSLLFPAAVRRLADQHGGRAPAPFPGLTGREGEVLRLMAR 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 160 GLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 206


>gi|302555756|ref|ZP_07308098.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302473374|gb|EFL36467.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 221

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+  Y   +    +     +  LT RE E L  ++EG +S EIA +L IS  TV+ + A
Sbjct: 139 ALIRNYLDRVRHGEEP---PEQILTPREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRA 195

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K   + R     YA+R  ++
Sbjct: 196 NLLHKLGLRDRLELTRYAIRAGLI 219


>gi|239943004|ref|ZP_04694941.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989462|ref|ZP_04710126.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446476|ref|ZP_06585866.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349423|gb|EFE76327.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 222

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 62/163 (38%), Gaps = 5/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARIRIG 143
           +R   ++  +    ++ R  +    V  T   +           + +        ++  G
Sbjct: 59  IRMPEMNGIEATREIVARDADAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADG 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++         L+  +             +  +LT RE E L  I++G ++
Sbjct: 119 VRVVASGEALLAPTVTRR--LITEFSKLAETPRPPALARIGDLTERETEVLVLIAQGLSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 177 AEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219


>gi|291298154|ref|YP_003509432.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567374|gb|ADD40339.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 216

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 14/171 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + + + D      +   +L  P        F              N +     
Sbjct: 49  PDVVLMDVRMPDMDGIEATRRLRRDLTEPPKVVVITTFENDEYVFDALRAGANGFVLKRA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               I   +  +     ++  + +  +                       LT RE E L 
Sbjct: 109 PATEIAHAIRTVASGDALLFPEAIRALAAARPAPPGNPHG-------PIALTAREAEVLR 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ +IA  L +S  T+  ++ S++ K     R+ A+  A  +  V
Sbjct: 162 LMATGLSNQDIATHLTVSLETIKTHVGSVLTKLGAANRTQAVIIAYESGFV 212


>gi|229018500|ref|ZP_04175361.1| Two-component protein Kinase [Bacillus cereus AH1273]
 gi|229024758|ref|ZP_04181196.1| Two-component protein Kinase [Bacillus cereus AH1272]
 gi|228736532|gb|EEL87089.1| Two-component protein Kinase [Bacillus cereus AH1272]
 gi|228742774|gb|EEL92913.1| Two-component protein Kinase [Bacillus cereus AH1273]
          Length = 592

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 13/233 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           T  +       D L R++ +D        +  L +     +  +V       Q +D +  
Sbjct: 366 TCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN--VVGLAEDGNQAID-LCG 422

Query: 80  SDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPE---NITPPAGMDNRYCSL 133
              P  ++  + +   D       + Q+   +   +F T  +    +       + +   
Sbjct: 423 RLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQDTEQALESLRNGADGFLLK 482

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           + +   +   + L+   G +I +    +I      + +  K         +ELT RE+E 
Sbjct: 483 SIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETPQSKATAYELTAREIEI 538

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++G     IA  L +S  TV NY ++   K   + +  AI  A+   I+
Sbjct: 539 LQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAILKALEIGII 591


>gi|261401222|ref|ZP_05987347.1| nitrate/nitrite response regulator protein NarL [Neisseria
           lactamica ATCC 23970]
 gi|269208805|gb|EEZ75260.1| nitrate/nitrite response regulator protein NarL [Neisseria
           lactamica ATCC 23970]
          Length = 218

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 241

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 18/182 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFC---PVFHTLPENIT-----PPAGMDNRYCSLT 134
           P  ++  + +   D Y  + +   +      PV     + +T           + Y    
Sbjct: 59  PDLVISDVMMPRCDGYGLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKP 118

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQAN---MFKSYDVHWGKDFEL- 186
           FD   +   +  +  +   +LR+       ++G +A        M    D    KD  L 
Sbjct: 119 FDPEELVARVRNVVRRQDRLLREAARFADTDVGQMARQITEIRTMLAHGDGSSSKDVALH 178

Query: 187 --TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N 
Sbjct: 179 NFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENQ 238

Query: 245 IV 246
           +V
Sbjct: 239 LV 240


>gi|2495418|sp|Q46751|CARR_PECCC RecName: Full=Transcriptional activator protein CarR
 gi|765139|gb|AAC45995.1| CarR [Pectobacterium carotovorum]
          Length = 244

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 79/226 (34%), Gaps = 31/226 (13%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              ++  + +    S+F++ +    Q       + S++P   ++     E      ++  
Sbjct: 9   IKRKLKGVGDVW-FSYFMMSKNSTSQ-----PYIISNYPEAWMKEYIKKEMFLSDPIIVA 62

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLT----------------FDVARIRIGLMLLF 148
                 P      + +T  A   + + S                   +VA + I   L  
Sbjct: 63  SLARITPFSWDDNDIVTLRAKNQDVFISSVQHDISSGYTFVLHDHDNNVATLSIANHLED 122

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSY---------DVHWGKDFELTGREVECLTWISE 199
                 +++   ++ +L         +Y              ++  L+ RE E L  +S 
Sbjct: 123 ANFEKCMKNHENDLQMLLVNVHEKVMAYQRAINDQDNPPDNSRNALLSPRETEVLFLVSS 182

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G+T  E++ ILGIS  TV  +I + +RK        AI  A+  N+
Sbjct: 183 GRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|150391892|ref|YP_001321941.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951754|gb|ABR50282.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 208

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 10/159 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           +R   +        + +    +   +  T  ++      + N    Y   +     I   
Sbjct: 54  IRMPIMDGVLATKMIKESFGSIRIIILTTFKDDQYIKEALKNGAQGYILKSQSADSIIES 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     +   +       +A+   +M K        D +LT RE E + W+ EG ++
Sbjct: 114 LRTVSKGNVVFETE-------IASVLTSMLKEEKEKHHLDLQLTEREHEIIKWVGEGLSN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            EI+  L +S  TV NY+  ++ K   + R+    + ++
Sbjct: 167 REISAALYLSEGTVRNYVTQLLEKLNVRDRTQLAIFYLK 205


>gi|289626196|ref|ZP_06459150.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648347|ref|ZP_06479690.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330868455|gb|EGH03164.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 909

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 17/178 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYC-------SLTF 135
           D ++   ++ + +   + +   E+  P+     + + I        R         SL  
Sbjct: 732 DRLQGDDVASEQRLQALERHAREVGAPLLGLIAMTQQIGLLLSQTRRDEARELLLRSLQS 791

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTG 188
                 I    L  +    L ++L ++        LL    A+   + +     D  L+ 
Sbjct: 792 AAGGALIPFKTLLGEHSQWLHEQLLQLPSCKVREALLEELPASCTPTPEPAHDSDC-LSV 850

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    ++
Sbjct: 851 RELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGLL 908


>gi|254776539|ref|ZP_05218055.1| response regulator receiver domain-containing protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 167

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L   +                LT RE E L ++++G ++ +IA  L +S  TV N++ + 
Sbjct: 83  LVLGEYRRIAQSKDDGPTRPRLTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQAT 142

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
            RK     R     YA+ + +
Sbjct: 143 FRKLQVANRVELARYAIEHGL 163


>gi|225872958|ref|YP_002754415.1| two-component system regulatory protein [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792212|gb|ACO32302.1| two-component system regulatory protein [Acidobacterium capsulatum
           ATCC 51196]
          Length = 216

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE+E L  ++ G  +  IA  L IS +TV ++IA+I+ K     R+ A+  AVR
Sbjct: 149 NDELSKRELEILRQVAAGLPNKLIAERLSISPDTVKSHIANILSKLGANDRTHAVTLAVR 208

Query: 243 NN 244
             
Sbjct: 209 RG 210


>gi|330868990|gb|EGH03699.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|331011382|gb|EGH91438.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 74

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + 
Sbjct: 13  NLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 72


>gi|325919969|ref|ZP_08181953.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325549544|gb|EGD20414.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 254

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTS 203
           +  +   +   +L    LLA A+QA   +  D    +     LT RE ECL + ++G T+
Sbjct: 150 VAAEAPRLAEAQLSPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGLTA 209

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L  S  TVN ++ S  RK   + R  A+   +   ++
Sbjct: 210 KSIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252


>gi|302540851|ref|ZP_07293193.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458469|gb|EFL21562.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 228

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     LT  V  +R G  LL P     L  R  + G   A    
Sbjct: 89  VYAALSAGASGFLLKDVTPEQLTAAVRTVRTGDALLAPAITRRLVQRFTQRGSDTATLHR 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S          LT RE+E L  ++ G ++ E+A  L ++  TV  ++A I+ K   +
Sbjct: 149 DLAS----------LTPRELEVLGLLARGLSNAELATRLYLAEATVKTHVARILAKLGLR 198

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 199 DRVQAVIAAYETGLV 213


>gi|190149328|ref|YP_001967853.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262641|ref|ZP_07544271.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914459|gb|ACE60711.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872064|gb|EFN03778.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 209

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 18/132 (13%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +   +      D+    L  ++ +   G  +L    +  L +R  E   L+     
Sbjct: 93  VFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVLSESVKQHLLERRPENDPLSV---- 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    
Sbjct: 149 --------------LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVH 194

Query: 232 TRSGAIAYAVRN 243
           +R  A    +  
Sbjct: 195 SRVAATVLYLEQ 206


>gi|229543630|ref|ZP_04432690.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
 gi|229328050|gb|EEN93725.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
          Length = 74

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +     LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A
Sbjct: 3   DNDFTHKPLLTKREKEVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQA 62

Query: 237 IAYAVRNN 244
           +   +R  
Sbjct: 63  VVELLRMG 70


>gi|121603888|ref|YP_981217.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120592857|gb|ABM36296.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 336

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F+LT RE E L W+ +GK + +I  ILG S  T+  ++  +  K   +TR+ A   A+  
Sbjct: 267 FKLTAREAEVLYWVVKGKVNRDIGDILGASPATIKKHLERVYAKLGVETRTAAAGRAMNR 326


>gi|108757533|ref|YP_632250.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK
           1622]
 gi|108461413|gb|ABF86598.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK
           1622]
          Length = 246

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 75/202 (37%), Gaps = 19/202 (9%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPEN 119
           ++   L  E  L+  V    P  L+  + L      D    V  R  ++   +F    E 
Sbjct: 44  IIGTALSGEAALEE-VPKLMPDVLLLDLGLPRMSGIDVTREVKARFPKIEILIFTIFDEE 102

Query: 120 ITPPAGMDNRYCS----------LTFDVARIRIGLMLLFP--KGRIILRDRLW--EIGLL 165
                 +                +   +  +R G  ++ P    R++   R+      L+
Sbjct: 103 DKVLEAVKAGASGYLLKGAPVDKIIEAIKEVRAGGTVIQPNLARRLLRHFRVEPDASPLI 162

Query: 166 AAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +   A    + D+      + L+ RE E L  I++G ++ E A +L +S+ T+  ++  I
Sbjct: 163 SPPAAPEPSASDLPQEPLLKPLSDREREILQLIAKGVSNSEAARLLDLSKATIRTHLEHI 222

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK     R  A+   +R  ++
Sbjct: 223 YRKLEVTNRVEAVTEGIRKGLI 244


>gi|75910296|ref|YP_324592.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75704021|gb|ABA23697.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 237

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  + + LT RE++ L  I +G ++  IA  L +S  TV  ++ +I+ K     R+   
Sbjct: 168 SHIVETYPLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIA 227

Query: 238 AYAVRNNIV 246
             A+R  +V
Sbjct: 228 VRALRAGLV 236


>gi|329934424|ref|ZP_08284503.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|329306020|gb|EGG49875.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
          Length = 227

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 7/164 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI---TPPAGMDNRYCSLTFDVARIRIG 143
           VR   L        +  RP      V  T   +           + +       A +  G
Sbjct: 56  VRMPELDGIAATRLITARPRAPRVLVLTTFDLDAYVFDALRAGASGFLLKDVHAAELLSG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201
           + ++     ++         L+  Y      ++ D       E LT RE + L  I+ G 
Sbjct: 116 IRVVASGESVLAPSATRR--LIGHYASGPGVRTPDPEAPAALETLTAREHDVLRLIASGL 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T+ EIA  LGI+  TV +++ +++RK   + R  A   A    +
Sbjct: 174 TNAEIAGHLGIAVGTVKSHVNAVLRKLELRDRVQATILAYDLGL 217


>gi|298251835|ref|ZP_06975638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546427|gb|EFH80295.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1065

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 17/216 (7%)

Query: 36   MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALSE 94
            +      +    R   L +  G   ++ ++  + Q   L  +   +    +  R + L+E
Sbjct: 862  LHQFPQALDILDRFRELLDRPG-DIYMTIQMLVLQVVALYQVGKKEQALTVTARLLNLTE 920

Query: 95   KDKYYNV----LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +D Y  V     +   ++      +       P         L     +   G       
Sbjct: 921  RDGYLRVYLDQGEPMRQVLLAFLASHGRQHELPRSTAAYASKLLAAFKQEGQG-----TS 975

Query: 151  GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
               +           A   A+   +  V       LT RE E L  ++ G ++ EIA  L
Sbjct: 976  PSEVSATTPSPSSAFAPKMASREPALVV------SLTRREQEVLCLLAAGASNQEIAQTL 1029

Query: 211  GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IS +TV  ++  ++ K     R+ AIA A   +++
Sbjct: 1030 VISLDTVKKHVGRLLDKLGATNRTQAIAQARARSLL 1065


>gi|182413518|ref|YP_001818584.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840732|gb|ACB74984.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 213

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 12/176 (6%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRP------TELFCPVFHTLPENITPPAGMDNRY 130
           +V    P  L+  + +        + Q          +   + +  P  I         Y
Sbjct: 42  LVEKHKPTVLILDLNMPRLHGIEVLRQTRTSSPHTRVIILSMHNDEPYVIETLRAGAMAY 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                +   I   L  +    R +    L E  + A        S  +       +T RE
Sbjct: 102 ILKGSESQEIVHALKEVLAGRRFLSAP-LSEWAINALVTKPADNSDPLQ-----SITPRE 155

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L   +EG ++ EIA  L IS  T   +  +++RK   +T++  + +A+R  ++
Sbjct: 156 RMVLQLAAEGASNSEIAEKLFISPRTAETHRTNLLRKLGLQTQTDLVRFAIRKGLI 211


>gi|167465455|ref|ZP_02330544.1| two-component response regulator LiaR [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 220

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  I++GKT+ +IA  L IS  TV  ++++++ K     R+    YA R
Sbjct: 153 EEGLTIREKEVLLLIADGKTNKDIAEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHR 212

Query: 243 NN 244
             
Sbjct: 213 KG 214


>gi|134100725|ref|YP_001106386.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913348|emb|CAM03461.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 202

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
            TL   +      D     L   V +   G+ +  P+       R+              
Sbjct: 88  ATLDAGVDGCLLKDAGATDLVSAVHQAAHGIPIFDPRVGERAAPRMRS------------ 135

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                    D  LT RE + L   + G+T+ EIA  LG++R+TV  Y+ + MRK   + R
Sbjct: 136 ------RLHDTGLTQREYDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNR 189

Query: 234 SGAIAYAVRNNIV 246
              IA A ++ ++
Sbjct: 190 IELIAKAAQSGLL 202


>gi|124024406|ref|YP_001018713.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964692|gb|ABM79448.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 233

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 18/182 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFC---PVFHTLPENIT-----PPAGMDNRYCSLT 134
           P  ++  + +   D Y  + +   +      PV     + +T           + Y    
Sbjct: 51  PDLVISDVMMPRCDGYGLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKP 110

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQAN---MFKSYDVHWGKDFEL- 186
           FD   +   +  +  +   +LR+       ++G +A        M    D    KD  L 
Sbjct: 111 FDPEELVARVRNVVRRQDRLLREAARFADTDVGQMARQITEIRTMLAHGDGSSSKDVALH 170

Query: 187 --TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N 
Sbjct: 171 NFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENQ 230

Query: 245 IV 246
           +V
Sbjct: 231 LV 232


>gi|325142479|gb|EGC64883.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           961-5945]
 gi|325198384|gb|ADY93840.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           G2136]
          Length = 218

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|166711196|ref|ZP_02242403.1| transcriptional regulator AhyR/AsaR family protein [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 254

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTS 203
           +  +   +   +L    LLA A+QA   +  D    +     LT RE ECL + ++G TS
Sbjct: 150 VAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHYIALTRRERECLQYSAKGLTS 209

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L  S  TVN ++ S  RK   + R  A+   +   ++
Sbjct: 210 KRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252


>gi|146275775|ref|YP_001165935.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
 gi|145322466|gb|ABP64409.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
          Length = 255

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 13/134 (9%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRII--LRDRLWEIG---------LLAAYQANM 172
             M      +   +   +IG +   P    +  L D   E G          +A+Y   M
Sbjct: 120 RAMTRAAIVVPVHLPFGQIGAVSFNPLDPDLTELDDIFLENGDAFGIYGRTFIASYVHAM 179

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                +  G    L+ REVECL W + GKT  EI++I+G SR TV  +I +   K     
Sbjct: 180 GSVQALPPGSR--LSKREVECLRWAAIGKTDLEISMIMGRSRATVRFHIHNASMKLNAVN 237

Query: 233 RSGAIAYAVRNNIV 246
           RS  +  A +   +
Sbjct: 238 RSQTVFKAAQLGYI 251


>gi|78778542|ref|YP_396654.1| LuxR family transcriptional regulator [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712041|gb|ABB49218.1| transcriptional regulator, LuxR family [Prochlorococcus marinus
           str. MIT 9312]
          Length = 92

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 41/63 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+ N
Sbjct: 14  MGLSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDN 73

Query: 244 NIV 246
             +
Sbjct: 74  GKI 76


>gi|66044867|ref|YP_234708.1| LuxR transcriptional regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|33413265|emb|CAD97431.1| AHL regulator [Pseudomonas syringae pv. syringae]
 gi|63255574|gb|AAY36670.1| regulatory protein, LuxR:Autoinducer-binding [Pseudomonas syringae
           pv. syringae B728a]
          Length = 247

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 71/198 (35%), Gaps = 25/198 (12%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           + +  ++ S++P   ++    S       +++       P F    E      G++    
Sbjct: 52  RTVKPVILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFF--WREARHAIQGVETDDF 109

Query: 132 SLTFDVARIRIGLMLLFPKGRII------------------LRDRLWEIGL-LAAYQANM 172
                  ++  G          +                  +RD+  +I + L  +   +
Sbjct: 110 LKRSAKYQLSSGATFTLHDASGLFAALSLCNARQQTDFDQRIRDKAADIQMSLIRFHDRL 169

Query: 173 FKSYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            K+   H         +L+ RE+  L W++ GK   EIA I  IS  TV  +++++  K 
Sbjct: 170 TKTQAPHELFPQPTRCKLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKL 229

Query: 229 ATKTRSGAIAYAVRNNIV 246
             +T   A+  A+   +V
Sbjct: 230 EVRTAKQAVYKAINMGMV 247


>gi|318060640|ref|ZP_07979363.1| two component system response regulator [Streptomyces sp. SA3_actG]
          Length = 226

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 13/182 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK--------YYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            + +S  P  ++  + +   D             L     +    F      +       
Sbjct: 42  RLAASHLPDVVLMDIRMPGTDGLAATRHISADPALAAVHVVMLTTFEVDEYVVQSLRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDF 184
             +     + + +   +        ++         L+  + A       +  V   +  
Sbjct: 102 AGFLGKGAEPSELLGAIRTAAAGDALLSPAATR--SLITRFLAQAPGTGPATGVDSARLA 159

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A    
Sbjct: 160 ALTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETG 219

Query: 245 IV 246
           +V
Sbjct: 220 LV 221


>gi|309378607|emb|CBX22785.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 218

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|270307800|ref|YP_003329858.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270153692|gb|ACZ61530.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 232

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +       + Y   +     I   +  +     ++  D +    LL        +S +  
Sbjct: 93  LGLLEAGASGYLLKSAKSDEIVGAIRAIKAGESVL--DSIATRKLLERVVNVSKESDEDK 150

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +L+ REVE L   S+G ++ EIA  L +S  TV  ++++I  K     R+ AI  
Sbjct: 151 VRG--QLSPREVEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVK 208

Query: 240 AVRNNIV 246
             R   V
Sbjct: 209 GFREGYV 215


>gi|163847172|ref|YP_001635216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525011|ref|YP_002569482.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668461|gb|ABY34827.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448890|gb|ACM53156.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 219

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 20/219 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-------SIVSSDWPFDLVR 88
           ++  D    +   +  + E  G   F +V         ++        I   D    ++ 
Sbjct: 7   ILIADDHTMFRQGLREILERKG--GFQVVAEVRDGAAAVEAASTTKPDIALLDVSMPVMT 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLL 147
            +  + +    +   R         H   + +        N Y     D   +   + ++
Sbjct: 65  GIEAARQIAQVSPQTRCV---VLTMHRDEQTVLEALRAGANAYLLKDADATELIEAIHVV 121

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +       +        ++ +  D     +  LT RE + L  +++G  +  IA
Sbjct: 122 YRGEAALAGSAAARV-------LDLLRRNDTSPALNEVLTPRERDILALLAQGDDNRAIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L ++  TV N ++ I +K     R+ A   AV+  +V
Sbjct: 175 LKLSLAEKTVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 213


>gi|320161029|ref|YP_004174253.1| putative two-component response regulator [Anaerolinea thermophila
           UNI-1]
 gi|319994882|dbj|BAJ63653.1| putative two-component response regulator [Anaerolinea thermophila
           UNI-1]
          Length = 356

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E L  +++G T+ EIA  L IS NTV  ++ SI  K    TRS A+A 
Sbjct: 297 LTEREREVLLLLAQGLTNREIAEALVISNNTVKRHLKSIFSKLNIHTRSAAVAK 350


>gi|313668365|ref|YP_004048649.1| two-component system response regulator [Neisseria lactamica
           ST-640]
 gi|313005827|emb|CBN87281.1| putative two-component system response regulator [Neisseria
           lactamica 020-06]
          Length = 218

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|300022129|ref|YP_003754740.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523950|gb|ADJ22419.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 223

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D     +  +      K  ++L R   +   V ++  + I       + Y     
Sbjct: 49  DIVLIDINMKGMTGIDTLRHLKATHLLAR--YIILTVSNSEDDLIEALRAGADGYLLKDM 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +    +L    G  +L+D L E+      ++ +          +  LT RE E L 
Sbjct: 107 EPEDL-CTNLLKASSGATVLQDTLAEV-----LKSALLSPVSAGSSGEELLTPREREILE 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ++EG  +  IA  LGIS  TV  ++ +++RK    +R  A  +
Sbjct: 161 CLAEGLNNKTIARKLGISDATVKVHVKNVLRKLNLASRLEAAVW 204


>gi|284033634|ref|YP_003383565.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283812927|gb|ADB34766.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 212

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRN 215
           + L   G   A         D    +    LT RE E L  ++ G+++ EIA  L +S  
Sbjct: 122 EALLSPGATRAVITRALSRPDAPPPERLASLTAREREVLRLVAAGRSNQEIADDLVVSPL 181

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T   ++A I+ K   + R   +  A    ++
Sbjct: 182 TAKTHVARILAKLGARDRVHLVIAAYEAGLL 212


>gi|254362590|ref|ZP_04978686.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           PHL213]
 gi|261491662|ref|ZP_05988244.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494219|ref|ZP_05990719.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153094197|gb|EDN75082.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           PHL213]
 gi|261310122|gb|EEY11325.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312677|gb|EEY13798.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 209

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +     D    VL    E    VF  +   +      D     L  ++ +   G 
Sbjct: 67  DTLRSLRAQGIDARIIVLTVSDEQ-SDVFALMDAGVDGYLLKDTDTPELLDNIRKAAAGE 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           ++L    R  L +R  E   L+                   LT RE++ L W++ G ++ 
Sbjct: 126 VVLSETVRQHLLNRQPENDPLSC------------------LTDRELDVLQWLATGMSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +IA  L IS  TV  +I +++RK    +R  A    +  
Sbjct: 168 QIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQ 206


>gi|298241116|ref|ZP_06964923.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554170|gb|EFH88034.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 938

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 21/173 (12%)

Query: 85  DLVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           D V  M L +   Y  + ++     +L   V    PE           Y     D     
Sbjct: 772 DHVLEMWLLQTQAYQMLQRQQDALAQLAQAVHLAAPEG----------YIRSFVDEGPSL 821

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGREVEC 193
             L+    K + + +D  +   LL A+             +           L+ RE + 
Sbjct: 822 AALLSQLRKQKPLAKDLPYLETLLRAFDQQPIPQPTQLEKEPSLSLQPLLDPLSAREQDV 881

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G ++ +IA  L ++  TV ++I  I+ K     R+ A+A A    ++
Sbjct: 882 LHLLARGASNQDIAEALVVTPGTVKHHITHILSKLEATNRTQAVARAQALGLL 934


>gi|225620688|ref|YP_002721946.1| DNA-binding response regulator, LuxR family protein [Brachyspira
           hyodysenteriae WA1]
 gi|225215508|gb|ACN84242.1| DNA-binding response regulator, LuxR family protein [Brachyspira
           hyodysenteriae WA1]
          Length = 317

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N     +     D  LT RE E L+++ +GKT+ E+++IL IS NTVNN++A+I  K+  
Sbjct: 245 NSKIENESGKEIDINLTRREKEILSYLLDGKTNKEVSLILSISLNTVNNHVANIYEKSGV 304

Query: 231 KTRSGAI 237
           K R   +
Sbjct: 305 KNRVELV 311


>gi|297199555|ref|ZP_06916952.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713519|gb|EDY57553.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   L    +     D R   L   +  +  G  LL P     L +R             
Sbjct: 93  IVEALRAGASGFLVKDTRPADLLDAIRTVAAGEALLSPGPTARLIERFLRS--------- 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S  V  G    L+ RE E L  ++ G  + EIA  LG+S  T   +++ IM K   +
Sbjct: 144 --PSVPVAGGGPECLSDREREVLALVARGLNNTEIAETLGLSPLTAKTHVSRIMGKLGAR 201

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A  +  V
Sbjct: 202 DRAQLVIVAYESGTV 216


>gi|163758001|ref|ZP_02165089.1| putative LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284290|gb|EDQ34573.1| putative LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 253

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGL--MLLFPKGRIILRDRLWEIGL--LAAYQANM 172
           P    P    +     L F V+   +G   +  F     I  + L ++    LA  +  +
Sbjct: 120 PPPALPLMQTEEGRTDLLFPVSLGAMGNGYIGFFGVDGAIDSELLIDLHRKSLAMMRETL 179

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             ++      D +L  RE+ECL  +  G  S+ I   L +S +TVN Y+ S   K     
Sbjct: 180 RLAFGAAPVAD-KLNEREIECLQLVGNGMKSEAIGERLNLSVHTVNAYLGSATTKLDAVN 238

Query: 233 RSGAIAYAVRNNIV 246
           R  AIA ++R  I+
Sbjct: 239 RIQAIAKSIRLGII 252


>gi|170738931|ref|YP_001767586.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168193205|gb|ACA15152.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 301

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            T D  R+++  +       I+LR  L   G +                +   LT RE E
Sbjct: 197 ATPDGRRLQLSRIGQVGGDEILLRLALDGGGEI------------ERLRRALGLTQREAE 244

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L W+S GK S +I  IL +S  TV  ++  +  K   + R+ A A  VR
Sbjct: 245 VLLWVSRGKASRDIGEILSLSPRTVTKHLEQVYAKLGVENRTSASALVVR 294


>gi|312128575|ref|YP_003993449.1| LuxR family transcriptional regulator [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778594|gb|ADQ08080.1| transcriptional regulator, LuxR family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 68

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +L+ RE E +  I+EG T+ EIAVIL IS  TV  Y+ +IM K    +R   IA+  +N
Sbjct: 5   KLSYREREIVKLIAEGMTNKEIAVILNISEKTVKTYVKNIMLKLEVDSRYKIIAWYYKN 63


>gi|291560732|emb|CBL39532.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [butyrate-producing bacterium
           SSC/2]
          Length = 222

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 68/173 (39%), Gaps = 6/173 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V  D P  ++  + + E D       + ++  ++   +  T  ++      +    + Y 
Sbjct: 43  VRKDKPDVILMDVRMPEMDGVQCTQIIKEQYPDVKIIILTTFDDDEYVYNALKHGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                +  +   +  +   G +I  +   ++    +  A       +H     E+T  E 
Sbjct: 103 LKGISMDELEKAINTVHSGGAMINPEVATKVVDFFSEMAQSNYDTSIHAQNVEEITDAEW 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E +  +  G ++ EI+  L +S  TV NY+++I+ K   + R+    + V++ 
Sbjct: 163 EIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQLAIWEVQSG 215


>gi|239979954|ref|ZP_04702478.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291451807|ref|ZP_06591197.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354756|gb|EFE81658.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 235

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 10/147 (6%)

Query: 103 QRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +RP   L   V     + I    G    Y +     A +   +  +     +        
Sbjct: 96  ERPVRFLALSVSDAAEDVIGVIRGGARGYVTKNITGADLVDSIFRVQDGDAVFSP----- 150

Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              LA +  + F S D     +    LT RE E L  I+ G    E+A  L IS  TV +
Sbjct: 151 --RLAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEVAKQLYISVKTVES 208

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++RK     R     +A    +V
Sbjct: 209 HVSAVLRKLQLSNRHELTRWATARRLV 235


>gi|261250785|ref|ZP_05943359.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891]
 gi|260937658|gb|EEX93646.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891]
          Length = 222

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201
           + LL      I+ D +W    +A      F+  +          LT RE E +  +  G 
Sbjct: 114 VSLLLKGMDKIMNDEMWLSRKVAQDYIEHFRCANTVTTSQAYANLTKREKEIMRLLGHGA 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A
Sbjct: 174 SNVQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|239981000|ref|ZP_04703524.1| response regulatory protein [Streptomyces albus J1074]
 gi|291452866|ref|ZP_06592256.1| response regulatory protein [Streptomyces albus J1074]
 gi|291355815|gb|EFE82717.1| response regulatory protein [Streptomyces albus J1074]
          Length = 219

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                ELT RE + L  +++G  + EIA  L IS  TV  ++  I +K   +TR+GA+A 
Sbjct: 152 RNPQPELTPRERDILRHLTQGLGNREIARALFISEATVKTHLGRIYQKLGVETRAGAVAV 211

Query: 240 AVRNNIV 246
                ++
Sbjct: 212 GKERRLL 218


>gi|271965229|ref|YP_003339425.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508404|gb|ACZ86682.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 245

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSD 204
           L P    + R  L  +    + +A                 LT RE E L+ ++EG ++ 
Sbjct: 135 LMPMPGPLARKLLARVRRAESGEAARPPERPCPEADRASSPLTTRERETLSLMAEGLSNK 194

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  LGIS +    ++A+I+ K     R+ A A A+   ++
Sbjct: 195 QIARRLGISEHGAKRHVANILAKLNCSNRTLATAVALNRGLL 236


>gi|146309197|ref|YP_001189662.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145577398|gb|ABP86930.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 220

 Score = 89.3 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G+++A         +        LT RE + L  I+ G T+ EI   LGI+  T   ++ 
Sbjct: 130 GMVSAQLLRRVVQRNQGGAPGSALTPREHQVLELIAAGFTNREIGEELGIATGTAKAHVE 189

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ K     R+ A    +   +V
Sbjct: 190 RVIGKLGVADRTQAAVQGIALGLV 213


>gi|325144605|gb|EGC66904.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240013]
          Length = 218

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N+
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNV 212


>gi|284043079|ref|YP_003393419.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283947300|gb|ADB50044.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 229

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 8/179 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE----LFCPVFHTLPENITPPAGMDNRYC 131
            +V+ + P  ++  + +   D      +   E    L    F              + + 
Sbjct: 42  ELVARERPDVVLMDIRMPRLDGIEATRRVAGEAVRVLVLTTFDLDEYVYAALRAGASGFL 101

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDF---ELT 187
                  ++  G+ ++     ++        I   A    ++  +  V   +     ELT
Sbjct: 102 LKDTPAEQLVAGVRVVAAGDALLSPSVTRRVIEQFARPAGSLVGAGSVGAARPPALDELT 161

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+ G ++ EIA  L +++ TV  ++A ++ K   + R  A+  A    +V
Sbjct: 162 ERELEVLELIACGLSNAEIAERLVVAQTTVKTHVARVLMKLGLRDRVQAVVLAYEAGVV 220


>gi|325977247|ref|YP_004286963.1| nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177175|emb|CBZ47219.1| Nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 203

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 68/187 (36%), Gaps = 12/187 (6%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +      QE        +  P  ++  + + E      + + PT     +F T  +    
Sbjct: 26  VATASNGQEALEKLAALTRQPDLILVDLQMPEMSGKKLLEELPTLSNVLIFSTEIDGELA 85

Query: 123 PAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
              +      Y     D   I   +  L      I    +    L A++Q    +     
Sbjct: 86  QHFIQKGVRGYLLKDEDPTDIVNHIQKLLADDSYI---AISSEVLTASFQHRQNEENVPT 142

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 +T ++ + L  +++G T+ EIA  L ++  TV  Y+  +        R+ AIAY
Sbjct: 143 ------ITEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAY 196

Query: 240 AVRNNIV 246
           A+R+N++
Sbjct: 197 AIRHNLI 203


>gi|229162147|ref|ZP_04290117.1| Two-component protein Kinase [Bacillus cereus R309803]
 gi|228621304|gb|EEK78160.1| Two-component protein Kinase [Bacillus cereus R309803]
          Length = 557

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN +          E    T  +       D L R++ +D        +  L +     +
Sbjct: 312 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 371

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117
             +V       Q +D +     P  ++  + +   D       + Q+   +   +F T  
Sbjct: 372 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQ 428

Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +    +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 429 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 484

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 485 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKE 544

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 545 EAVQKALEIGII 556


>gi|117928181|ref|YP_872732.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648644|gb|ABK52746.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 216

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 9/160 (5%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR    S  D    + ++  ++   V      +      ++    +    VA+      +
Sbjct: 60  VRLPDGSGLDVARELRRQRPDVGIVVLTMYAGDEQLFGALEAGASAF---VAKDAPAEDV 116

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +      ++  R +    LA                  +LT RE E L  +++G     I
Sbjct: 117 VSAARHALVSPRSFSAADLAGAMRRRMNPSGP------QLTPREREVLQLMADGLGVSAI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS +T   +++ +  K     R+ A+  A+R  ++
Sbjct: 171 ARQLFISESTTKTHVSKLYEKLGAANRAQALMAAIRLGLL 210


>gi|110633760|ref|YP_673968.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284744|gb|ABG62803.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 241

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE ECL W + GK S +IA IL +S  TV +Y+ +  +K   +T S A+A A R  I
Sbjct: 179 LAPRERECLLWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRI 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|308176449|ref|YP_003915855.1| helix-turn-helix domain-containing protein [Arthrobacter
           arilaitensis Re117]
 gi|307743912|emb|CBT74884.1| helix-turn-helix domain-containing protein [Arthrobacter
           arilaitensis Re117]
          Length = 432

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              D     ++ L GRE E L  ++ G+ +  I+  LGIS NTV  ++ ++ +K    +R
Sbjct: 357 PPSDAADIAEWSLGGREFEVLQLLAAGQRNRAISQALGISENTVKFHVRNLFKKMGVGSR 416

Query: 234 SGAIAYAVRNNI 245
           + A+A A  + +
Sbjct: 417 AQAVALAHSHGV 428


>gi|298370036|ref|ZP_06981352.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281496|gb|EFI22985.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 219

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 7/173 (4%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITPPAGMDNRYCSL 133
           +V    P  ++  + +   +    + Q  +   E    +     +       M       
Sbjct: 42  LVEQLRPDLVLLDLDMPVMNGREALGQILSSNPEQKVVMLTVSEDGDELIECMKQGAHGF 101

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192
                +       +   G+ +  D ++   + A    ++              LT RE E
Sbjct: 102 LL---KNINADFFIEAVGKALNGDNVFSPEMTAHLVKSLISPIQPQSDAHIGTLTPRERE 158

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  ++ G ++  IA  L ++ +TV  Y+ SI+RK    +R  A  YA++++I
Sbjct: 159 TLHHLAIGHSNKVIAKKLNLAESTVKAYVQSILRKLGLSSRVQAAVYAIQHDI 211


>gi|23015369|ref|ZP_00055147.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 209

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G  + EIA  LGI+  TV  +   IM+K      +   AYA+R  +
Sbjct: 148 LTAREREVLQLIARGNKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|328883517|emb|CCA56756.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 219

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 13/170 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + +   D      +   E      +    F T            + + +   +
Sbjct: 49  PDVVLMDIRMPGMDGIEATRRVLAERPATRVIILTTFDTDEHVFEALRAGASGFLTKEVE 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +R  + ++     ++       +  +  +      +  +H      LT RE E +  
Sbjct: 109 PAELRRAVEIVAAGDSLLSPGVTRRV--IERFAHRPRPAAALHA-----LTARENEVVRL 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG+++DEIA  L IS  T   +I+  + K   + R   +  A  + +V
Sbjct: 162 VAEGRSNDEIAAALVISPLTAKTHISRAITKLGLRDRVQLVITAYEHGLV 211


>gi|282864894|ref|ZP_06273948.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560319|gb|EFB65867.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 210

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA   A+     D        LT RE+E L  + EG ++ +I+  L +S+ TV +++ 
Sbjct: 127 SALAPAVAHRLM--DRMRTPAQALTKRELEVLQLVGEGLSNQQISKRLFLSQATVKSHLV 184

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +R+ A+A A    ++
Sbjct: 185 HIYAKLGVDSRTSAVAAATARRLI 208


>gi|196234323|ref|ZP_03133152.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196221590|gb|EDY16131.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 6/183 (3%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL----PENITPP 123
           L  E  ++ +  ++  F  V    L   D     ++ P +       T+    P+     
Sbjct: 26  LSAEPDIEIVAEANNGFQAVEMFVLHRPDLVLMDVRLPLQDGVQAARTIRNDHPQARIAM 85

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             + +    +   +    +G +    +   +L   +  +     Y A   ++  +     
Sbjct: 86  LTVSDAEEDILGAIDAGVVGYLPKSVEREQLLT-AIHRLAEGGEYFAPEIEAK-LRSTNR 143

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E LT I +G+++ EI   LGI+  TV  ++  + +K     R+ A   AV+ 
Sbjct: 144 VSLTKRETEVLTQIVKGRSNKEIGYDLGIAEPTVRLHLTHLFKKLHVMDRTQAAMVAVQR 203

Query: 244 NIV 246
            +V
Sbjct: 204 GLV 206


>gi|167646083|ref|YP_001683746.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167348513|gb|ABZ71248.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 244

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 73/212 (34%), Gaps = 18/212 (8%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQ-------EQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
             + AL    G    L +             E     +V+S      +R     E     
Sbjct: 35  QGLRALAHEHGFYSALYLHIGHAACGRAAAPEGPPSRLVASSPIA--LRQYG--EALTGS 90

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--- 156
           ++ +R      P   T  +   P  G+  R+  L   V     G  L+   G+ + R   
Sbjct: 91  SIARRAAGSHRPFAWTNTDEDMP--GLSGRHVGLAIPVQDHAAGPGLVALIGQDLDRVRR 148

Query: 157 --DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                      AA + +      V       LT RE+ECL + + G+T  +    LGI+ 
Sbjct: 149 LAREEAAALAFAAAELHQSILASVRPAATAALTAREIECLRFAAVGRTVADTGQALGITS 208

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  ++ ++  K     +  A+A AV   +V
Sbjct: 209 RTVEFHLKNVAEKLDATNKVHAVAIAVSQGLV 240


>gi|144898601|emb|CAM75465.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 217

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 6/143 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTF--DVARIRIGLMLLFPKGRIILRDRLWEI 162
           P E+   V     +  +    ++            +R+ +  + L   G + L   L E 
Sbjct: 74  PGEVPVVVLSAADDRRSVLQAVEIGAAGFIPKTSSSRVMLSALKLVLSGGVYLPPALIER 133

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                       S  V       LT R+ E L  + EGK++ EIA IL ++  TV  ++ 
Sbjct: 134 STPRGEGL----SPAVVEQAMSILTPRQREVLGLLGEGKSNKEIARILELAEGTVKLHVT 189

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           +I++      R+ A+  A +  +
Sbjct: 190 AILKALNVNNRTRAVVAAAQMGL 212


>gi|269836639|ref|YP_003318867.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785902|gb|ACZ38045.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 237

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 9/141 (6%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   +F      I       + Y     + +++   +  +     +I          LA 
Sbjct: 100 IILTMFAEDGHVIRAIRAGADAYLLKNSESSKVIDAIRAVARGESVIEP-------QLAT 152

Query: 168 YQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              N F+       ++    LT RE++ L  ++ G ++ EIA  L ++ +TV N ++ + 
Sbjct: 153 KLLNEFRRISEFREEETVAGLTEREIQLLRLVASGMSNKEIAAELSLAESTVKNRLSLLF 212

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   K R+ A  YA+ + ++
Sbjct: 213 EKLDVKDRTQAAIYALSHGLI 233


>gi|163753720|ref|ZP_02160843.1| Regulatory protein [Kordia algicida OT-1]
 gi|161325934|gb|EDP97260.1| Regulatory protein [Kordia algicida OT-1]
          Length = 146

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   L+ RE E L  ++EG ++ EIA +L +S +T+  +++++  K   K R+ AI  A 
Sbjct: 80  ETLGLSKREYEVLCLLAEGHSNKEIASLLSVSESTIKTHVSNVYTKLDVKRRTQAIQKAK 139

Query: 242 RNNIV 246
           +  I+
Sbjct: 140 QLQIL 144


>gi|83749981|ref|ZP_00946930.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551]
 gi|83723351|gb|EAP70580.1| Hypothetical Protein RRSL_00051 [Ralstonia solanacearum UW551]
          Length = 263

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 24/189 (12%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D IV+ D+P + +  +          +++R      PV+    +   P A +D  + +
Sbjct: 63  LMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAAAPVAEIDRGWLA 119

Query: 133 ------LTFDVARI----------RIGLMLLFPKGRIILRDRLWEIG-----LLAAYQAN 171
                 L   VA                  L       L   L ++       L    A+
Sbjct: 120 KFIAYDLRNAVADGVYDEGHCIGTYFSFHRLVSVNEPFLASVLRDLTPVLHRTLMRAVAD 179

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K++         L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT   
Sbjct: 180 TEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 239

Query: 232 TRSGAIAYA 240
            R G    A
Sbjct: 240 NRVGVAVLA 248


>gi|295394642|ref|ZP_06804861.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972535|gb|EFG48391.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 228

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 11/162 (6%)

Query: 89  CMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRI 142
            +A+ + D        R      P+      +     I       N Y   T D+++IR 
Sbjct: 61  DIAMPQLDGIDTTKAIRERGDTTPIMLLTSYDVEERFIQGMQAGANGYLIKTSDISQIRA 120

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            ++ +     +   D       + A +A      D+     + LT RE   LT +  G++
Sbjct: 121 AILSIASGTAVFSPDAAGFSRAVVANEAPGQTPADL-----YGLTEREEAILTQLCRGQS 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + EIA  LGIS  TV  +I SIM+K   ++R   +  A  + 
Sbjct: 176 NYEIARFLGISEGTVKVHITSIMKKANVRSRLELVVQAFNSG 217


>gi|257482053|ref|ZP_05636094.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 687

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 17/178 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYC-------SLTF 135
           D ++   ++ + +   + +   E+  P+     + + I        R         SL  
Sbjct: 510 DRLQGDDVASEQRLQALERHAREVGAPLLGLIAMTQQIGLLLSQTRRDEARELLLRSLQS 569

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTG 188
                 I    L  +    L ++L ++        LL    A+   + +   G D  L+ 
Sbjct: 570 AAGGALIPFKTLLGEHSQWLHEQLLQLPSCKVRDALLEELPASCTPTLEPAHGSDC-LSV 628

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    ++
Sbjct: 629 RELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGLL 686


>gi|78047709|ref|YP_363884.1| two-component response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036139|emb|CAJ23830.1| two-component response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 214

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 1/141 (0%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            E    +    PE                  +     G M L    R  LRD +  +   
Sbjct: 73  LEALRGILSEWPEARIVILTTYRGDAQAMSALKSGARGFM-LKGMMRKELRDTIRAVHAG 131

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                            + +L+ RE+E L  ++ G  + EIA  L ++  TV  ++  I+
Sbjct: 132 RRVVPAEIAMELAQHAGEDDLSPREMEVLRELARGNANREIAESLSVTEGTVKAHMKRIL 191

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   K R+ A+  A++  I+
Sbjct: 192 SKLGAKDRTHAVLLALKRGIL 212


>gi|32035561|ref|ZP_00135492.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207547|ref|YP_001052772.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae L20]
 gi|126096339|gb|ABN73167.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 209

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 18/132 (13%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +   +      D+    L  ++ +   G  +L    R  L DR  E   L+     
Sbjct: 93  VFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVLSDSVRQHLLDRRPENDPLSV---- 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    
Sbjct: 149 --------------LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVH 194

Query: 232 TRSGAIAYAVRN 243
           +R  A    +  
Sbjct: 195 SRVAATVLYLEQ 206


>gi|332162558|ref|YP_004299135.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666788|gb|ADZ43432.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 202

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 78/200 (39%), Gaps = 17/200 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           ++V       + +  ++  D  FD+V                +P   L       +    
Sbjct: 1   MIVDDHPLMRRGIKQLLELDSNFDVVAEANCGSDATIEAAKCQPDVILLDLNMKGMSGLD 60

Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANM 172
           T  A    G+D R   LT   AR  +  M+       +L+D   EI L    LA+   N+
Sbjct: 61  TLKALRNEGIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENV 120

Query: 173 FK--------SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           F         S D       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I ++
Sbjct: 121 FSDAVTQYLSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNL 180

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           +RK   ++R  A    + N 
Sbjct: 181 LRKLNVRSRVAATIMYLENK 200


>gi|239992911|ref|ZP_04713435.1| two-component system regulatory protein [Alteromonas macleodii ATCC
           27126]
          Length = 214

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +     LT +EVE L  I+ G ++ EIA  +  S  T+ N ++SIM K   + R+ A+  
Sbjct: 148 FENPEPLTEKEVEILRLIAAGYSNKEIADAMFKSTGTIKNQVSSIMAKLGVRDRTRAVLK 207

Query: 240 AVRNNIV 246
           A+   ++
Sbjct: 208 ALEQGVI 214


>gi|261365900|ref|ZP_05978783.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
 gi|288565546|gb|EFC87106.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
          Length = 220

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 80/218 (36%), Gaps = 16/218 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+  +D    +   + AL       ++ +V         +  +  +D P  ++  + +  
Sbjct: 8   RIALIDDHTLFRSGIKALLTR--QDNYEVVGEAADGLSGVKLVEQTD-PDVVLLDLDMPV 64

Query: 95  KDKYYNVLQ----RPTEL--FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +    + Q    RP ++     V     +           +         +   +    
Sbjct: 65  MNGREALAQILSSRPEQVVVMLTVSEDCEDLTECMRLGARGFLLKNIHADFLVDAIRKAA 124

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIA 207
               +   +      + A    ++ +       +  + LT RE+E L +++ G ++  IA
Sbjct: 125 EGDNVFSPE------MTARLVQSLIQPNTPPATRALDALTTRELEILGYLAAGHSNKIIA 178

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L ++ +T+  ++ SI+RK    +R  A  YAV++N+
Sbjct: 179 RKLNLAESTIKVHVQSILRKLELSSRVQAAVYAVQHNV 216


>gi|171914768|ref|ZP_02930238.1| DNA-binding response regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 212

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 8/142 (5%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   VF    +           Y      +  I  G+      G  +          
Sbjct: 79  CRVLMLTVFEDAAKITQAICNGAQGYLLKNSSIEEIISGIQQSLKGGVPMTP-------- 130

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             A+Q     S       D+ L+ RE E L  + +G    EIA  L +S +TV+ Y+  +
Sbjct: 131 CIAHQVLELFSRFAPRHADYGLSTRERETLELMVQGFIRKEIADRLNLSLHTVDTYLRGV 190

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK    TR+GA+A A++  +V
Sbjct: 191 YRKLEVNTRTGAVAKALKEGLV 212


>gi|17232908|ref|NP_489446.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134898|dbj|BAB77454.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 237

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  + + LT RE++ L  I +G ++  IA  L +S  TV  ++ +I+ K     R+   
Sbjct: 168 SHIVETYPLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIA 227

Query: 238 AYAVRNNIV 246
             A+R  +V
Sbjct: 228 VRALRAGLV 236


>gi|254000165|ref|YP_003052228.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|253986844|gb|ACT51701.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
          Length = 232

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 7/169 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +    + K  + L +   +   V     + +       + Y     
Sbjct: 71  DVVLIDLNMKGLNGIETLRRFKTESSL-QARFVVLTVSDAEDDLLEALRAGADGYLLKDM 129

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +    +     G  +++D L E+   A  +    K+ D     D  LT RE E L 
Sbjct: 130 EPEDL-CASLKKVISGMTVIQDSLTEVLKQALLEPRTRKADD-----DVALTDREQEILQ 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +++G  +  IA  LGIS  TV  +I  ++ K    +R  A  +A R  
Sbjct: 184 CLADGLNNKTIARKLGISDTTVKVHIKHLLSKLKLTSRLEAAVWAHRKK 232


>gi|224368539|ref|YP_002602702.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691255|gb|ACN14538.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 217

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 40/59 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E LT ++EGK++ +IA IL IS  TV ++ ASIM++   +T +  I YA+R+ 
Sbjct: 154 LSPREEEVLTLLAEGKSNKKIADILCISTRTVEHHRASIMKRLDLRTLADLIKYAIRHG 212


>gi|170723583|ref|YP_001751271.1| ATP-dependent transcriptional regulator LuxR [Pseudomonas putida
           W619]
 gi|169761586|gb|ACA74902.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pseudomonas putida W619]
          Length = 905

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA--------YQAN 171
           +    G       L   +A  + G+M  F +   +    L E  LLA           A 
Sbjct: 771 LLEQGGEAQAAERLPMALAAAQGGVMQPFQRLIELHPLWLRE-QLLARPACKVQVELLAR 829

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +      G    L+GRE+  L  I++G ++ +I+  L IS +TV  + + I  K   +
Sbjct: 830 LPELAAPGSGTCESLSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVE 889

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+A A    ++
Sbjct: 890 RRTQAVARAKSLGLL 904


>gi|288904269|ref|YP_003429490.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|306830297|ref|ZP_07463468.1| possible response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|288730994|emb|CBI12538.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304427544|gb|EFM30645.1| possible response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 207

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 68/187 (36%), Gaps = 12/187 (6%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +      QE        +  P  ++  + + E      + + PT     +F T  +    
Sbjct: 30  VATASNGQEALEKLAALTRQPDLILVDLQMPEMSGKKLLEELPTLSNVLIFSTEIDGELA 89

Query: 123 PAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
              +      Y     D   I   +  L      I    +    L A++Q    +     
Sbjct: 90  QHFIQKGVRGYLLKDEDPTDIVNHIQKLLADDSYI---AISSEVLTASFQHRQNEENVPT 146

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 +T ++ + L  +++G T+ EIA  L ++  TV  Y+  +        R+ AIAY
Sbjct: 147 ------ITEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAY 200

Query: 240 AVRNNIV 246
           A+R+N++
Sbjct: 201 AIRHNLI 207


>gi|313500551|gb|ADR61917.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 235

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 7/159 (4%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             M +   D+ Y    +  E+ C   H L    T  +  D ++      VAR    +  +
Sbjct: 84  STMPVLWTDELYKEAPQFREMAC--LHGLRHGWT-QSLHDQQHNESQISVARPNGPIDEV 140

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               +      L    L A    +   +         +++ RE+E L W + GKT+ ++A
Sbjct: 141 ELYDKAGSVQWLCH-ALHAVLGEHHLNAL---CPPQPKMSERELEVLKWSAAGKTAADVA 196

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IL +S++TVN +I S++ KT    ++GAIA A     +
Sbjct: 197 SILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|294811923|ref|ZP_06770566.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324522|gb|EFG06165.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 234

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 87  VRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRI 142
           VR   L+       ++  P       V  T   +      +      +         +  
Sbjct: 73  VRMPELNGIRATERIVAGPGRPPKVLVVTTFENDAYVYDALRAGAAGFLLKRVAADELIQ 132

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + L+     ++    +     LAA       +    W +  +LT RE + L  ++ G T
Sbjct: 133 AVRLMARSDSLLFPAAVRS---LAAEHGARRTAPVPPWAR--KLTEREADTLRLMAAGLT 187

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  +G+   TV +++A+++ KT  + R+ A+  A  +  +
Sbjct: 188 NGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFI 231


>gi|219850206|ref|YP_002464639.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219544465|gb|ACL26203.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 219

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 73/219 (33%), Gaps = 20/219 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-------SIVSSDWPFDLVR 88
           ++  D    +   +  + E  G   F +V         ++        +   D    ++ 
Sbjct: 7   ILIADDHTMFRQGLREILERKG--GFQVVAEVRDGAAAVEAAKTTKPDVALLDVSMPVMT 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLL 147
            +  + +    +   R         H   + +        N Y     D + +   + ++
Sbjct: 65  GIEAARQIGQVSPHTRCV---VLTMHRDEQTVLEALRAGANAYLLKDADASELIEAIHVV 121

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +       +        ++ +  D        LT RE + L  +++G  +  IA
Sbjct: 122 YRGEAALAGSAAARV-------LDLLRRNDNAPALHEVLTPRERDILALVAQGDDNRAIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L ++  TV N ++ I +K     R+ A   AV+  +V
Sbjct: 175 LKLSLAEKTVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 213


>gi|116749099|ref|YP_845786.1| two component LuxR family transcriptional regulator
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698163|gb|ABK17351.1| two component transcriptional regulator, LuxR family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 218

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 8/176 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVF--HTLPENITPPAGMDNRY 130
            +  S  P  ++  +++   +    + +   + T     V   H   E I          
Sbjct: 44  RLAESLKPDLMLMDLSMPRMNGMGAIQEIKKQCTATKILVLTVHKSEEYILATLKAGADG 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L        +  +     G+  L   + E  +    +          W     LT RE
Sbjct: 104 YVLKDATHSELMLAIECVFSGKSYLSPSISEKVIEGYLEGRKTIKSSTSWDT---LTQRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I+EG  + +IA  L IS  TV  + A++M+K    + S   A+A+   ++
Sbjct: 161 KEILKMIAEGYKNKDIADYLCISAKTVEKHRANLMKKLDLHSASSLTAFAMEKGLI 216


>gi|300786703|ref|YP_003766994.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796217|gb|ADJ46592.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 47/134 (35%), Gaps = 14/134 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +            R   +   V  I  G  +  P               +A    +
Sbjct: 93  VFAAMRAGARGYLLKGARNEQIIRAVRVIGDGEAIFSP--------------AIATRVLS 138

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +  +          LT RE E L  ++ G  +  IA  L +S+ TV N+++ I RK    
Sbjct: 139 LLGTATPRDESFPRLTLREQEILRLVARGMGNASIAEELVLSQKTVRNHVSHIFRKLRVT 198

Query: 232 TRSGAIAYAVRNNI 245
            RS AIA A    I
Sbjct: 199 DRSQAIAKAKEAGI 212


>gi|297156827|gb|ADI06539.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 222

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     +   +   + +      +I         L+A +   +         +   LT 
Sbjct: 102 GFLVKDTEPEELIHAVRVAHRGDALISPSVTRR--LIAEFAGRVQAPEPGPRLR--ALTD 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E +  ++ G T+DEIA  L +S  T   +++ IM K   + RS  +  A  + +V
Sbjct: 158 REREVMRLVAAGLTNDEIAARLVLSPATAKTHVSRIMTKLDVRDRSQLVVLAYESGMV 215


>gi|254489762|ref|ZP_05102957.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010]
 gi|224464847|gb|EEF81101.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010]
          Length = 212

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 10/170 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           EQ    +V  D     +  +    + K  ++L R   +   V  +  + +       + Y
Sbjct: 47  EQTQPDLVLLDLNMRGMDGLETLRRFKQTDLLTR--YVILTVSDSEDDLMEALKIGADGY 104

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGR 189
                +   +R  LM     G  +L+D L ++              D    + D  LT R
Sbjct: 105 LLKDMEPEDLRANLMKASV-GVTVLQDSLTQV------LKKALSEPDTKVNQADAGLTDR 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E E L  ++EG  +  IA  LGIS  TV  +I +I+RK    +R  A  +
Sbjct: 158 ENEILDCLAEGMNNKNIARKLGISDTTVKVHIKNILRKLNLTSRLEAAVW 207


>gi|71905906|ref|YP_283493.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71845527|gb|AAZ45023.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 221

 Score = 88.9 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 12/220 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR-CMA 91
           + +++ ++        +  L   + A   +L   D    +   +++ ++  FDLV   +A
Sbjct: 1   MLKLLVVEDHALVREGLVRLLGQIEAGAKVLESADF---ESALNVLENEGEFDLVLLDLA 57

Query: 92  LSEKDKYYNV-LQRPTELFCPV-----FHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L   D +  + + R      PV     F   P          + +    F    +   + 
Sbjct: 58  LPGIDGFAGLDILRRRYPAMPVAVVSAFDDTPTITRVLNLGASGFIPKAFSGEALLSAVR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      I R        L           +     +  LT R+ + L  +  G ++ +
Sbjct: 118 EVLAGN--IFRPNGQSAARLDDATPVPPPPKNGVRPDEIGLTDRQGQVLALMVRGLSNRD 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  LG+S  TV  +  ++ +     +R+ A+    R  I
Sbjct: 176 IADQLGLSEGTVKIHATAVFKALGVSSRTQALVAVARYGI 215


>gi|78049092|ref|YP_365267.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037522|emb|CAJ25267.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 923

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 42/78 (53%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           QA + +        D   + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK 
Sbjct: 832 QALLERLSGDDDPADDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKL 891

Query: 229 ATKTRSGAIAYAVRNNIV 246
             ++R  A+A A++  ++
Sbjct: 892 DARSRESALAQALQRGLL 909


>gi|311899330|dbj|BAJ31738.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 223

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L    F              + +     D A +   + L+     ++         L+  
Sbjct: 82  LILTTFENDEYVAEALRAGASGFLGKGIDPAELLDAVRLVAAGDALLSPAATK--ALIGR 139

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           + A           +   LT RE + +  ++ G ++D+IA  L ++  T   ++   M K
Sbjct: 140 FLAQPDPVRRAALPRLDVLTAREQQVVALVAAGLSNDDIAERLFVTPLTAKTHVNRAMTK 199

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+  +  A    +V
Sbjct: 200 LGARDRAQLVVIAYETGLV 218


>gi|302531315|ref|ZP_07283657.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440210|gb|EFL12026.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 218

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--------D 157
            E    +    P+           +  +   V     G ++       ++         D
Sbjct: 66  VEATREITTAAPDTRVLVLSASGEHSDVLEAVKAGASGYLVKSASAAELVDAVRRTADGD 125

Query: 158 RLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            ++  GL         +  D   G  +   LT RE + L  +++G T+ +IA  L +S  
Sbjct: 126 PVFTAGLAGLVLGEYRRMADAPDGAPEPPRLTDRETDVLRLVAKGLTARQIAERLVLSHR 185

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TV N++ S +RK     R     YA+ + +
Sbjct: 186 TVENHVQSTLRKLQLHNRVELARYAIEHGL 215


>gi|320537182|ref|ZP_08037151.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
 gi|320145970|gb|EFW37617.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
          Length = 217

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 6/171 (3%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDV 137
           D  F  +R    +  D    + ++   +   +  T  +       + N    Y       
Sbjct: 48  DLIFLDIRMPNYNGVDATKKIKEQYPNIKILMLTTFTDIDYIQQALKNGASGYLLKDSAP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLT 195
             I  G+        +I  + + +  LL   +    K+ +       ++ELT +E+E + 
Sbjct: 108 DVIYDGIKAALSGNVVINPE-IAQNILLGKAEKREPKTEEEITTLANEYELTQKEIEIIK 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG ++ EIA    +S  T+ N I+ I  KT    R+    +A +N IV
Sbjct: 167 LVAEGFSNKEIAHKQQLSEGTIKNNISVIFSKTFVADRTQLALFAFKNGIV 217


>gi|291006472|ref|ZP_06564445.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
            TL   +      D     L   V +   G+ +  P+       R+              
Sbjct: 96  ATLDAGVDGCLLKDAGATDLVSAVHQAAHGIPIFDPRVGERAAPRMRS------------ 143

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                    D  LT RE + L   + G+T+ EIA  LG++R+TV  Y+ + MRK   + R
Sbjct: 144 ------RLHDTGLTQREYDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNR 197

Query: 234 SGAIAYAVRNNIV 246
              IA A ++ ++
Sbjct: 198 IELIAKAAQSGLL 210


>gi|218661626|ref|ZP_03517556.1| autoinducer transcriptional regulator protein [Rhizobium etli
           IE4771]
          Length = 243

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 167 AYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           A+  +    Y++H   D    L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ + 
Sbjct: 160 AHLIHRKAVYELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTA 219

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K    T S A + AV+  I+
Sbjct: 220 RFKLGCATISAAASRAVQLRII 241


>gi|330720547|gb|EGG98827.1| two component transcriptional regulator2C LuxR family protein
           [gamma proteobacterium IMCC2047]
          Length = 151

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 50/117 (42%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
              L   +    +  +         +R++L  I     Y A+ F        +   LT R
Sbjct: 30  APGLLATIVESGVEGLFSKGSPVDQMREKLPLISQGGRYVASEFLELIQQGQQVSALTDR 89

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ L  I  GK + EIA  L IS  TV+ +  S+M K    + +  +A A+++ ++
Sbjct: 90  ELQVLNMIVAGKINKEIAEALFISPKTVDKHRTSLMSKLEVHSVAQLLARALKDGLI 146


>gi|298242112|ref|ZP_06965919.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555166|gb|EFH89030.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 273

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 17/163 (10%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D  R +  +       V+    +    VF  +            R+  +   +  +  G 
Sbjct: 124 DATRQIVSNSPQIRVLVVTMFEDDHL-VFAAMRAGARGYLLKGVRHEDMVRAIRAVGSGD 182

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT 202
            +  P               +A    + F +           EL+ RE + L  +++G  
Sbjct: 183 AIFSP--------------AIATRLVSYFSALQPEHPSQIFPELSHRERDILALLAQGCK 228

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L +S  TV NY+++I+ K     R+ AI  A    +
Sbjct: 229 NAEIAERLVVSPKTVRNYVSNIISKLQVADRAQAILRAKDAGL 271


>gi|218289695|ref|ZP_03493903.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512532|ref|YP_003185966.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218240152|gb|EED07336.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257479258|gb|ACV59577.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 221

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 15/222 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +L  R+   D    + + +  L  Y      ++  W    E   D  V    P  L+  +
Sbjct: 4   ELPIRVAIADDNAEYRLTLADLLAY-EPDIEVVAVWANGHEVLRD--VEQVRPDVLLLDI 60

Query: 91  ALSEKDK-----YYNVLQRPTELFCPVFHTL-PENITPPAGMDNRYCSLTFDVARIRIGL 144
            + E D         +L    ++     H   P  +       + Y      +  +   +
Sbjct: 61  TMPEVDGLCVLKAVPLLAWRPKIVVLTMHEQSPVVLEAVRAGVSGYIVKDAPMEDLLRAI 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                         +    ++ A    + +      G    LT RE + L  ++ GK+++
Sbjct: 121 REAHEGR------AMVHPQVMRAVLGEIERYAKPSDGWKDLLTAREFDVLCQMAAGKSNE 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L I+  T  N+++ I+ K     RS A+ +A R   +
Sbjct: 175 QIAESLHITLKTAKNHVSHILAKLNVSDRSQAVLHAYRERWI 216


>gi|66044947|ref|YP_234788.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63255654|gb|AAY36750.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 238

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             G +  +  L F       G       L  + + ++R+   +   L      + +S + 
Sbjct: 119 YLGEEKAFSLLRFANKETGTGSTQGEYSLAAEVKSLVREFHHK---LTGLVMGVNESDE- 174

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               +F +T RE E   W + GKT +EIAVIL IS+ TV+ +I++++ K   +T+  A  
Sbjct: 175 ----NFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTKLQACI 230

Query: 239 YAVRNNIV 246
              +  I+
Sbjct: 231 QLTKMGIL 238


>gi|72161171|ref|YP_288828.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71914903|gb|AAZ54805.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 221

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 4/158 (2%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +A +E+      L     +    F              + +     +   +  G+ ++ 
Sbjct: 62  GLAAAERILADPRLSSTRVVILTTFDLDEYIFEALRLGASGFLVKDTEPEDLINGVRVVA 121

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++       +  +A Y     +       +D  LT RE E +  + EG +++EIA 
Sbjct: 122 RGEALLSPSVTRRV--IAEYAGRPRRPAPDRRLRD--LTDREREVVALVGEGLSNEEIAA 177

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  TV  +++  M K   + R+  +  A    +V
Sbjct: 178 RLVLSPATVKTHVSRAMAKLRVRDRAQLVVVAYETGLV 215


>gi|300780243|ref|ZP_07090099.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300534353|gb|EFK55412.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 212

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT RE+E L  ++ G ++ EI   L +S  TV +++  I  K   ++R+ A+A
Sbjct: 145 DRTPRSSLTPRELEVLQLVAGGSSNREIGQRLMLSEATVKSHLVHIYDKLGVRSRTSAVA 204

Query: 239 YAVRNNIV 246
            A    ++
Sbjct: 205 SAREQGVL 212


>gi|271968535|ref|YP_003342731.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511710|gb|ACZ89988.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 4/163 (2%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGL 144
           VR       +    +++   +    +  T   +    AG+        L   +    +  
Sbjct: 56  VRMPGTDGIEATGRIVRTCRQTRVLILTTFDLDEYAFAGLKAGASGFLLKNALPEELLAA 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
           +     G   +  R+    LL  +   +         +  + LT RE E L  ++ G ++
Sbjct: 116 IRNVAAGDAAVSPRITRR-LLENFAHQLPTGGAPASAERLQRLTPREREVLIEVARGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  ++  I+ K   + R  A+ +A    ++
Sbjct: 175 TEIAAGLHLAEATVKTHLGRILLKLELRDRVQAVVFAYEARLI 217


>gi|229131918|ref|ZP_04260783.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196]
 gi|228651509|gb|EEL07479.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196]
          Length = 207

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 21/217 (9%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  + E   +  F ++      E+ L  I     P  ++  + + +    
Sbjct: 1   MDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKK-PDVILMDLNMPKMSGL 57

Query: 98  -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                L +  +   P+      N     +         Y     D        +    +G
Sbjct: 58  ETIEALNK-KQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 115

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVI 209
            I+L+  + E  +        +K  +VH  K  +  LT +E+  L  I+ G  + EIA  
Sbjct: 116 EILLQPNIMEKIV-------KYKRKEVHADKVAENNLTDKELFVLKAIARGYKNKEIAFD 168

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GI+  TV  ++ +I  K    +RS A+A ++   ++
Sbjct: 169 MGIAERTVKAHLTNIYNKLGVNSRSEAVAVSIERKLI 205


>gi|50842410|ref|YP_055637.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|50840012|gb|AAT82679.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|315105495|gb|EFT77471.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 218

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 16/136 (11%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQA 170
           F  L    +     +    SL   + ++  G  LL P+   R+I R              
Sbjct: 89  FDALDAGASGFMLKNAEAESLVAGLRQVADGHALLAPEVTRRVIAR-------------- 134

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++ +   V   K  +LT RE+E    ++ G ++ EIA  L +S  TV  ++++ + K   
Sbjct: 135 SVHQGSTVTGSKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDL 194

Query: 231 KTRSGAIAYAVRNNIV 246
           + R   +A A  + ++
Sbjct: 195 RDRVQLVALAYESGLI 210


>gi|330973646|gb|EGH73712.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 237

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             G +  +  L F       G       L  + + ++R+   +   L      + +S + 
Sbjct: 118 YLGEEKAFSLLRFANKETGTGSTQGEYSLAAEVKSLVREFHHK---LTGLVMGVNESDE- 173

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               +F +T RE E   W + GKT +EIAVIL IS+ TV+ +I++++ K   +T+  A  
Sbjct: 174 ----NFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTKLQACI 229

Query: 239 YAVRNNIV 246
              +  I+
Sbjct: 230 QLTKMGIL 237


>gi|330860763|emb|CBX71053.1| nitrate/nitrite response regulator protein narP [Yersinia
           enterocolitica W22703]
          Length = 236

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174
           G+D R   LT   AR  +  M+       +L+D   EI L    LA+   N+F       
Sbjct: 103 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 162

Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 163 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 222

Query: 233 RSGAIAYAVRNN 244
           R  A    + N 
Sbjct: 223 RVAATIMYLENK 234


>gi|303238745|ref|ZP_07325277.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593624|gb|EFL63340.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 216

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 6/158 (3%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFP 149
           +  +    +  +   +   +  T  +       + N    Y         + + +  +  
Sbjct: 61  NGVEGTKLIKSKFQSIKVIILTTFNDEENISKAIKNGADGYVLKDIKPDDLIVAVKSVAK 120

Query: 150 KGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              I+    L  +   +   +    +  +  +  D  LT RE+  +  I +GK++ EIA+
Sbjct: 121 GFSIMHHTALNTVAKQINHDKEPTQRKQEPKF--DINLTDRELSIIKLIVDGKSNKEIAL 178

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + I+  +V N I +I+ K   K R+    +AV+NNIV
Sbjct: 179 SIFITEGSVKNIITNILEKLNLKDRTQLAVFAVKNNIV 216


>gi|289679330|ref|ZP_06500220.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
 gi|330901245|gb|EGH32664.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 237

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             G +  +  L F       G       L  + + ++R+   +   L      + +S + 
Sbjct: 118 YLGEEKAFSLLRFANKETGTGSTQGEYSLAAEVKSLVREFHHK---LTGLVMGVNESDE- 173

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               +F +T RE E   W + GKT +EIAVIL IS+ TV+ +I++++ K   +T+  A  
Sbjct: 174 ----NFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTKLQACI 229

Query: 239 YAVRNNIV 246
              +  I+
Sbjct: 230 QLTKMGIL 237


>gi|167006408|ref|YP_001661631.1| putative two-component system regulator [Streptomyces sp. HK1]
 gi|166162490|gb|ABY83611.1| putative two-component system regulator [Streptomyces sp. HK1]
          Length = 220

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +        ++   + ++     ++       +    +   +  ++      +  +LT 
Sbjct: 100 GFLLKDASADQLAEAVRVIAAGDALLAPGITRRLIAEFSRLDDRPRAP--LRQRIEDLTE 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E +  I+ G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 158 RETEVVALIAHGLSNAEIAQRLVLAEQTVKTHVGRILLKLGLRDRTQAAVFAYESGLV 215


>gi|46190453|ref|ZP_00121483.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bifidobacterium longum
           DJO10A]
          Length = 64

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 3   ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 62

Query: 245 IV 246
           +V
Sbjct: 63  LV 64


>gi|330973884|gb|EGH73950.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 247

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 25/198 (12%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           + +  ++ S++P   ++    S       +++       P F    E      G++    
Sbjct: 52  RTVKPVILSNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFF--WREARHAIQGVETDDF 109

Query: 132 SLTFDVARIRIGLMLLFPKGRII------------------LRDRLWEIGL-LAAYQANM 172
                  ++  G          +                  +RD+  +I + L  +   +
Sbjct: 110 LKRSAKYQLSSGATFTLHDASGLFAALSLCNARQQTDFDQRIRDKAADIQMSLIRFHDRL 169

Query: 173 FKSYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            ++   H         +L+ RE+  L W++ GK   EIA I  IS  TV  +++++  K 
Sbjct: 170 TRTQAPHELFPQPTRCKLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKL 229

Query: 229 ATKTRSGAIAYAVRNNIV 246
             +T   A+  A+   +V
Sbjct: 230 EVRTAKQAVYKAINMGMV 247


>gi|330504873|ref|YP_004381742.1| regulatory protein LuxR [Pseudomonas mendocina NK-01]
 gi|328919158|gb|AEB59989.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01]
          Length = 913

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ++R+ L  +  L A Q     S   H     +L+GRE+  L  I+ G ++ EI+  L IS
Sbjct: 822 LIREAL--LAQLPAQQHVDESSEIEHEPLTEKLSGRELAVLQLIARGCSNQEISERLFIS 879

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TV  +   I  K   + R+ A+A A    ++
Sbjct: 880 LHTVKTHARHINSKLGVERRTQAVARAKGLGLL 912


>gi|256374750|ref|YP_003098410.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255919053|gb|ACU34564.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 215

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 14/209 (6%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +  +    G    ++   D      +  +     P  ++  + +   D     L+R
Sbjct: 13  VRSGLRLILSSAG-DIDVVAECD--DGHLVAELARQHRPHVVLLDIRMRTSDGLV-ALRR 68

Query: 105 PTELFCP-------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157
              L  P        F              + +     +  ++   +  L   G ++   
Sbjct: 69  LRALPDPPKVAMLTTFDVDEYVSEALRLGASGFLLKDTEPEQLVKAVRDLARGGAVLDPG 128

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
                  + +  A+  ++ +        L+ RE E L  I +G ++ EI   L +S  TV
Sbjct: 129 V---AARVLSAVADGERAAEPARRLLSSLSEREREVLVLIGQGMSNAEIGGTLHLSEATV 185

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             Y++S++ K     R  A   A R  ++
Sbjct: 186 KGYVSSVLGKIGAVNRVQAALVAYRGGLI 214


>gi|254521823|ref|ZP_05133878.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14]
 gi|219719414|gb|EED37939.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14]
          Length = 230

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 53/172 (30%), Gaps = 18/172 (10%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
             ++ SD PF   +   L          +R   +  P    L     P  G         
Sbjct: 75  RHVLDSDAPFFWSKRQGLRG--------ERYQVVKQPRGEGLHGLQVPVFGTTG------ 120

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                  I             R +L      A   A               L+ RE E L
Sbjct: 121 ---LEGAISFAGTSIDASASARLQLEAAATAAFRAARRLAEVPAALSGSL-LSTREREVL 176

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W++ G+   EIA  LG+S  TV N++    ++    T + A+  A R   +
Sbjct: 177 RWVAAGRRQAEIATTLGLSARTVENHLRHARQRLGVATTAQAVRAATRRGEI 228


>gi|188990738|ref|YP_001902748.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732498|emb|CAP50692.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris]
          Length = 272

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 150 KGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEI 206
           +   +   +L    LLA A+QA   +  D    +     LT RE ECL + ++G T+  I
Sbjct: 171 EAPRLAEAQLPPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGMTAKSI 230

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L  S  TVN ++ S  RK   + R  A+   +   ++
Sbjct: 231 AATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 270


>gi|116626901|ref|YP_829057.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230063|gb|ABJ88772.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 224

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 83  PFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPENITPPAGM----DNRYCSLTFD 136
           P  ++  + ++    +    ++++       +F ++ ++    A       N Y      
Sbjct: 50  PDVVLMDIGMAGMSSFEATRLIRKERPEVKVIFLSMYDDEDYLAECVDMGANGYILKDSP 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   +  +   G  +       +  L        +       +   LT RE E L  
Sbjct: 110 ADQLITAIREVQRGGSYLSP---RLLSRLVDDFRLQGRGGGTRSPRFGTLTKREREILKM 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EGK+  EIA    +S  TV  +  ++MRK     ++  + YA++  I+
Sbjct: 167 LAEGKSVKEIAAFFELSVKTVEAHKFNLMRKLDIHNKAQLVQYAIQKKII 216


>gi|294788302|ref|ZP_06753545.1| nitrate/nitrite response regulator protein NarL [Simonsiella
           muelleri ATCC 29453]
 gi|294483733|gb|EFG31417.1| nitrate/nitrite response regulator protein NarL [Simonsiella
           muelleri ATCC 29453]
          Length = 220

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209
            R +  D ++   + A    ++ + ++   G   + LT RE+E L  ++ G ++  IA  
Sbjct: 119 KRAVDGDNVFSPEMTARLVQSLIRPHNAGTGSALDTLTPRELEILGHLAAGHSNKIIARQ 178

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L ++  T+  ++ +I+RK    +R  A  YAV++ +
Sbjct: 179 LDLAEFTIKVHVQNILRKLELSSRVQAAVYAVQHKV 214


>gi|284045220|ref|YP_003395560.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949441|gb|ADB52185.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 223

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 7/161 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +          L    F              + +        ++   +  +   
Sbjct: 63  GIEATRRIVTAGAAARVLILTTFDLDEYAFAGLRAGASGFLLKDVPPEQLTAAIRAVAGG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDE 205
             ++         LL  +  ++                 ELT RE E L  ++ G+T+ E
Sbjct: 123 DAVVAPRVTR--ALLDTFAHHLPADAAAPVPPHEHPRLSELTAREHEVLLELAAGRTNAE 180

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  TV  ++  I+ K A + R  A+  A +  +V
Sbjct: 181 IAERLVLSEATVKTHVGRILGKLALRDRVQAVILAYQIGLV 221


>gi|154503122|ref|ZP_02040182.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149]
 gi|153796116|gb|EDN78536.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149]
          Length = 206

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 76/199 (38%), Gaps = 12/199 (6%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE--- 107
           AL   + AS  + V       +    +  +  P  L+  + + E        +   E   
Sbjct: 15  ALKTILEASGDITVSATGTDGKDAVRLFRTYRPDVLLMDIRMKELSGLDASAEILKEFPD 74

Query: 108 --LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             +      +  E I     +  +   L  D   +   L  +     +   + + +I  L
Sbjct: 75  AKILLLTTFSDDEYIVRALKLGAKGYLLKQDYESLIPALHAVHSGQTVFGNEIISKIPEL 134

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                   ++      +D++++ RE+E +  I++G ++ EIA  L +S  TV NY++SI+
Sbjct: 135 -------LQTGPTFHLEDYDISERELEIIRLIADGLSNKEIASRLFLSEGTVRNYLSSIL 187

Query: 226 RKTATKTRSGAIAYAVRNN 244
            K   + R+    +  R+ 
Sbjct: 188 DKLDLRDRTQVAVFYYRHK 206


>gi|94968718|ref|YP_590766.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550768|gb|ABF40692.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 208

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   LT RE+E L  I  GK++ EIA  L +S NTV+ + A+IM        +  + YA
Sbjct: 140 NKSMGLTNRELEILQLIVSGKSNKEIASDLSLSVNTVSVHRANIMEGLGIHNTAELVVYA 199

Query: 241 VRNNIV 246
           ++N +V
Sbjct: 200 IKNGLV 205


>gi|319951571|ref|ZP_08025372.1| regulatory protein, LuxR [Dietzia cinnamea P4]
 gi|319434774|gb|EFV90093.1| regulatory protein, LuxR [Dietzia cinnamea P4]
          Length = 205

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D    K+  L+ RE E ++ I +G ++++IA    +S NTV  Y+ S  RK    T
Sbjct: 129 IMGPDKWPAKEAGLSHREAEVVSLIVQGLSNEQIAEQCYLSLNTVKTYVRSAYRKMDVAT 188

Query: 233 RSGAIAYAVRNNI 245
           R+ A+A+ + N +
Sbjct: 189 RAQAVAWGIGNGL 201


>gi|123441494|ref|YP_001005480.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088455|emb|CAL11247.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 209

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174
           G+D R   LT   AR  +  M+       +L+D   EI L    LA+   N+F       
Sbjct: 76  GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 135

Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 136 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195

Query: 233 RSGAIAYAVRNN 244
           R  A    + N 
Sbjct: 196 RVAATIMYLENK 207


>gi|294509070|ref|YP_003565959.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM
           B1551]
 gi|294352374|gb|ADE72696.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM
           B1551]
          Length = 202

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 9/194 (4%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           LLV   L     +  ++ S+   +++  ++             P  +   V       I 
Sbjct: 6   LLVDDHLLVMLGIRRLLESEEDIEIIDTVSDPSSLIEVVATTSPDVVVTDVRMKEFNGIE 65

Query: 122 PPAGMDNRYCSLTFDV-----ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM---F 173
               + +++  +   +                     I ++R       A  Q+NM    
Sbjct: 66  LTKELLSKFPEIKVVILSGYDHEEYYNAAFKAGASAYITKERSAFDLANAIRQSNMGYIL 125

Query: 174 KSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            S +    KDFE LT  E + L  IS+ KT+ EI++ L IS+ TV  +I+SI+RK    +
Sbjct: 126 FSKNQISTKDFETLTSAEQKILLLISKDKTNYEISMDLSISKRTVEYHISSIIRKLDVDS 185

Query: 233 RSGAIAYAVRNNIV 246
           R GA+   ++  ++
Sbjct: 186 RVGAVVKGIKKGLI 199


>gi|258652230|ref|YP_003201386.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258555455|gb|ACV78397.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 212

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 12/119 (10%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + +    +  +   +  +      I  D      ++ A  A+  +           LT
Sbjct: 94  DGFVTKRQHIGEVLAAVTAVLRGDTPISPD------MVGALIASRPRPPGGD------LT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G+++ + A  LGIS +TV N++  I+ K    ++  A+A A R  ++
Sbjct: 142 PRESEVLQLVGAGRSNQQTARELGISVHTVRNHVQHILDKLGAHSQLEAVAIASRLGLL 200


>gi|226357726|ref|YP_002787465.1| transcriptional regulator, LuxR family, sensory transduction
           protein liaR [Deinococcus deserti VCD115]
 gi|226319968|gb|ACO47961.1| putative transcriptional regulator, LuxR family, putative sensory
           transduction protein liaR [Deinococcus deserti VCD115]
          Length = 210

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L    A+         G   EL+ RE+E L  I++G  + EI + L IS ++V  ++ 
Sbjct: 127 AFLDPQVAHHVLGAMRTPGVPVELSARELEVLRLIADGLGNREIGMQLEISVSSVKLHVQ 186

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ K     R+ A   A+R  ++
Sbjct: 187 DLLEKLQASDRTQAAVKALRQGLL 210


>gi|66767622|ref|YP_242384.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|66572954|gb|AAY48364.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 254

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISE 199
            + +   +   +   +L    LLA A+QA   +  D    +     LT RE ECL + ++
Sbjct: 146 AVNVTQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAK 205

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+  IA  L  S  TVN ++ S  RK   + R  A+   +   ++
Sbjct: 206 GMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 252


>gi|47177072|ref|YP_015683.1| hypothetical protein pHCG3_p118 [Oligotropha carboxidovorans OM5]
 gi|47115463|emb|CAG28516.1| probable TraR [Oligotropha carboxidovorans OM5]
          Length = 239

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 86/234 (36%), Gaps = 23/234 (9%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            +L+  +            +    E  G       R+     +  ++ V + +P +  R 
Sbjct: 12  DNLIDALELARDQRMIKQALRHFCESNGFD-----RFAHLNVRSTETCVLTTYPAEWQRL 66

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC------------SLTFDV 137
               +K    + +    +    +F    ++ +  +    R+             S+    
Sbjct: 67  Y-FDKKYALIDPVVISAKRNMEIFSWSQDDASKYSKDVKRFFREADDFGIRSGLSIPIRT 125

Query: 138 ARIRIGLMLLFPKGRII----LRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVE 192
                 ++ L  + R +    ++D +  +  +A   A++ +       +  +ELT REV 
Sbjct: 126 PFGGTAILTLASEQRRVDFAGIQDTVRAMNAVAFAHAHLNRVAAAPCRRTKYELTPREVT 185

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CLTW S GKT  EIA +L I   TV NY+     K      + A+  AV  +++
Sbjct: 186 CLTWASLGKTMSEIADLLQIDVRTVRNYLDLAREKLGGSNIAHAVRLAVMQHLI 239


>gi|229083091|ref|ZP_04215495.1| Two-component protein Kinase [Bacillus cereus Rock4-2]
 gi|228700249|gb|EEL52831.1| Two-component protein Kinase [Bacillus cereus Rock4-2]
          Length = 592

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN +          E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117
             +V       Q +D +     P  ++  + +   D       + Q+   +   +F T  
Sbjct: 407 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQ 463

Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +    +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 ETPQSKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQMALEIGII 591


>gi|218886123|ref|YP_002435444.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757077|gb|ACL07976.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 216

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLPENITPPAGMDNRYC 131
           IV    P  ++  + L   D    + +       T++     H     I           
Sbjct: 43  IVEKHMPDIVLMDLTLPLMDGTEAIREIKRRCERTKVLALTAHKKDSLIYRTLSAGADGY 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
            L    + I +  M     GR  +   + E+ L+  +  +  +           L+ RE 
Sbjct: 103 VLKNVSSDILVQAMETVLSGRRYISPEISEL-LIEDFLRHGRRESGSLLDL---LSDREK 158

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  ++EG  +  IA  L IS  TV  + A++ RK    + +  +++A+ + +
Sbjct: 159 QVLKLVAEGHGNKMIADKLCISHKTVEKHKANLKRKLGADSTAELVSFAIEHGL 212


>gi|218248856|ref|YP_002374227.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|257061918|ref|YP_003139806.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|218169334|gb|ACK68071.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801]
 gi|256592084|gb|ACV02971.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802]
          Length = 96

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 41/61 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE+E L  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   + +A++   
Sbjct: 12  LSGREIEILDLVATGLTNLEIAEELEISKRTVDNHISNILTKTKTENRVELVRWALQWGK 71

Query: 246 V 246
           +
Sbjct: 72  I 72


>gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 237

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 16/189 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +Q L  +V SD     +    L  K +    L     +F        +         + Y
Sbjct: 51  QQMLPDLVISDVMMPRLDGFGLLRKLREDERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 110

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---------AYQANMFKSYD 177
               FD   +   +  +  + + +L++       ++G +A           QA+   + D
Sbjct: 111 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQADALPNQD 170

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                    T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  +
Sbjct: 171 PV---QHNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTETSSRTELV 227

Query: 238 AYAVRNNIV 246
            YA+++++V
Sbjct: 228 RYALQHHLV 236


>gi|26987503|ref|NP_742928.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24982170|gb|AAN66392.1|AE016267_1 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
          Length = 905

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLL---AAYQA 170
            +    G + +   L   +     G     +  L  K    L+++L         A    
Sbjct: 769 ALLLDEGKEGQAAQLLPSLLEAAHGGVMQPMQPLLEKHPQWLQEQLQAGAACPVQAELLK 828

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++        G    L+GRE+  L  I++G ++ +I+  L IS +TV  + + I  K   
Sbjct: 829 HLPPVPIASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGV 888

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+ A+A A    ++
Sbjct: 889 ERRTQAVAKAKSLGLL 904


>gi|304394580|ref|ZP_07376499.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130]
 gi|303293241|gb|EFL87622.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130]
          Length = 221

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 43/68 (63%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  ELT RE++ L  +++G+++ EIA +LG+S  TV+++ ++IMRK    + +  + 
Sbjct: 148 AEEETNELTSREMQVLQSLAKGRSNREIAEVLGVSPKTVDSHRSNIMRKFGVHSIATLLV 207

Query: 239 YAVRNNIV 246
            A+R  ++
Sbjct: 208 EAMRQGLI 215


>gi|239927379|ref|ZP_04684332.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435723|ref|ZP_06575113.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338618|gb|EFE65574.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 222

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 43/88 (48%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L+   + A  +  + +  D     +  LT RE E L  ++EG +S EIA +L IS  TV 
Sbjct: 133 LYPGAVTALIRNYLDRVRDGEEAPEQLLTPREEEVLKLVAEGHSSKEIAELLFISVKTVQ 192

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +++ K   + R     YA+R  +V
Sbjct: 193 RHRENLLHKLGLRDRLDLTRYAIRAGLV 220


>gi|124008987|ref|ZP_01693672.1| DNA-binding response regulator, LuxR family, putative [Microscilla
           marina ATCC 23134]
 gi|123985413|gb|EAY25321.1| DNA-binding response regulator, LuxR family, putative [Microscilla
           marina ATCC 23134]
          Length = 222

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +    ++  + E T RE+E L  + E  T+ EIA  L ISR TV  +  ++  KT  +  
Sbjct: 142 RPPRPNFINEGEFTDREMEVLRLLCEQYTAQEIADKLFISRRTVEGHKDNLFAKTGARNL 201

Query: 234 SGAIAYAVRNNIV 246
           +G + YA++N +V
Sbjct: 202 AGLVIYALQNQLV 214


>gi|326315443|ref|YP_004233115.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372279|gb|ADX44548.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 254

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR + L+  +   ++ Q   +          E       +             +   L+ 
Sbjct: 95  VRVLMLTVSEDGEDLAQALRQGAQGYLLKTIEGDLLADAIGRAARGEPVVSMELMGKLVA 154

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            F          +  +   A   A   +      G    L+ RE + L  I+ G ++ EI
Sbjct: 155 AFQAQGGPPAAPVRAVDADAETAAIACEPEAATPGGASPLSPREEDVLREIARGASNKEI 214

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           A  L I+  TV  ++  I+RK    +R  A  YA
Sbjct: 215 ARALDIAETTVKIHVQHILRKLGLSSRVQAAVYA 248


>gi|256396913|ref|YP_003118477.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256363139|gb|ACU76636.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 227

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 3/135 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P     L ++        A  A 
Sbjct: 90  VYDALAAGASGFLLKDVTPEHLVASVRLVDTGDALLAPSITRRLVEKFAAPPAEDAGGAK 149

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          LT RE E L  +  G ++ E+A  L +S  TV  ++A I  K + +
Sbjct: 150 ASPAVHRDLAA---LTPREREILALMGRGLSNTELAARLVLSEATVKTHVAHIFTKLSLR 206

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    +V
Sbjct: 207 DRAQAVVVAYETGLV 221


>gi|256376957|ref|YP_003100617.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921260|gb|ACU36771.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 492

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 1/113 (0%)

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVEC 193
           FD A +R     + P G  I  +    +G  A     + ++        DF L+ RE++ 
Sbjct: 359 FDPAGVRALATRIAPVGGTISVEVDHRLGATATLVLPLRRALAAPEEVPDFGLSARELDV 418

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L+ ++ G  + EIA  + +S  T+  ++  I  K    TR  A A AV   +V
Sbjct: 419 LSRVARGLRNREIAREIQLSPATIKFHLVRIFEKLGVGTRGEAAAVAVEFGLV 471


>gi|302876066|ref|YP_003844699.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
 gi|307686787|ref|ZP_07629233.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Clostridium cellulovorans 743B]
 gi|302578923|gb|ADL52935.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
          Length = 805

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ +E+E +  I+EG T+ EIA  L IS  TV  +IA++++K   + R  A+  A  N+
Sbjct: 744 ELSKKELEVIRLIAEGCTNGEIAARLDISTATVKFHIANLLKKLNAENRIMAVKIASEND 803

Query: 245 I 245
           +
Sbjct: 804 L 804


>gi|258650584|ref|YP_003199740.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258553809|gb|ACV76751.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 524

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 37/73 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +       +   LT RE + L   + G++S +IA  L IS  T  N++  I  KT    R
Sbjct: 445 QPQPRRRARATGLTAREEQVLALAAVGRSSRQIAAELTISEKTARNHLEHIYTKTGVSNR 504

Query: 234 SGAIAYAVRNNIV 246
           +GA  +AV++ IV
Sbjct: 505 AGASLFAVQHGIV 517


>gi|196229129|ref|ZP_03127994.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226361|gb|EDY20866.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 10/195 (5%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTE 107
           AL +Y   +  +         ++    +    P  L+  + L + +       ++QR   
Sbjct: 17  ALQQYFALAPAITCEAVFPNAEEALRRIPKLAPELLLVDINLPKMNGIEFVGQIVQRCPG 76

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           + C +     E       +    C           I   +      G  +    L    +
Sbjct: 77  ILCLMLTMYEETPLIFDALKAGACGYLLKETPPHEIVAAIEEAKAGGSPMTP--LIARRV 134

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ++ +Q           G+   LT RE E L  +++G    EI  I+GIS +TVN++   I
Sbjct: 135 VSFFQKQPVPPPAAQSGE--GLTDREREVLDLLAQGYLYKEIGEIMGISTHTVNSHNRHI 192

Query: 225 MRKTATKTRSGAIAY 239
             K   ++R  A+A 
Sbjct: 193 YEKLQVRSRGQAVAK 207


>gi|330897589|gb|EGH29008.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 222

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144
            M +        +LQ+       V  T+ ++        +     Y         +  GL
Sbjct: 59  RMPILNGLGAARILQQRMPGLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIDGL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         + A     M +           L  RE + L  ++ G ++ 
Sbjct: 119 QRVARGEEALNS------AVSARLLRRMTERNTSGAALPETLPPRERQVLGLVAGGFSNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|325927834|ref|ZP_08189059.1| two component transcriptional regulator, LuxR family [Xanthomonas
           perforans 91-118]
 gi|325541824|gb|EGD13341.1| two component transcriptional regulator, LuxR family [Xanthomonas
           perforans 91-118]
          Length = 200

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 1/141 (0%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            E    +    PE                  +     G M L    R  LRD +  +   
Sbjct: 59  LEALRGILSEWPEARIVVLTTYRGDAQAMSALKSGARGFM-LKGMMRKELRDTIRAVHAG 117

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                            + +L+ RE+E L  ++ G  + EIA  L ++  TV  ++  I+
Sbjct: 118 RRVVPAEIAMELAQHAGEDDLSPREMEVLRELARGNANREIAESLSVTEGTVKAHMKRIL 177

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   K R+ A+  A++  I+
Sbjct: 178 SKLGAKDRTHAVLLALKRGIL 198


>gi|318606649|emb|CBY28147.1| nitrate/nitrite response regulator protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 236

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFK------ 174
           G+D R   LT   AR  +  M+       +L+D   EI L    LA+   N+F       
Sbjct: 103 GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQY 162

Query: 175 --SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 163 LSSRDEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 222

Query: 233 RSGAIAYAVRNN 244
           R  A    + N 
Sbjct: 223 RVAATIMYLENK 234


>gi|318060416|ref|ZP_07979139.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078887|ref|ZP_07986219.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 219

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 10/171 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V+ D    L+  +  +           P  L    F              + +     
Sbjct: 50  DVVAMDVRMPLMDGIGATRAVLAMAG-PLPKILVVTTFENDAYVYDALRAGADGFLLKRA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A I   + ++     ++    +     LA +      +          LTGRE E L 
Sbjct: 109 RPAEIAHAVRVVAAGDSLLFPAAVRR---LADHHGGRAPAP------FPGLTGREGEVLR 159

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 160 LMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 210


>gi|307324066|ref|ZP_07603275.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306890515|gb|EFN21492.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 430

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 47/124 (37%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +        D+    L       R     L   G  +  D + E G L      +    
Sbjct: 299 GDGELRATVRDDGPGVLRRTALDARRVGERLSALGGRLDVDAVPEWGTLVTATVPLGPPQ 358

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                  + L  RE+E L  ++ G+ + +IA  L IS +TV  ++A+I+ K    +R  A
Sbjct: 359 PARKDPLYVLGARELEVLERLARGRRNRQIAQELHISESTVKFHVANILEKLGVTSRGEA 418

Query: 237 IAYA 240
            A A
Sbjct: 419 AALA 422


>gi|301155137|emb|CBW14601.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Haemophilus parainfluenzae T3T1]
          Length = 219

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           L++       + +  +V  +  F++V  +    +     + + P   +       L    
Sbjct: 18  LIIDDHPLMRRGIKQLVELEENFEVVADVGSGTEGISIAIQESPDLIILDLNMKGLSGLD 77

Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------ 164
           T       G+D R   LT   A+  I  ++       +L+D   ++ L            
Sbjct: 78  TLKGLRAEGVDARILILTVSDAKNDIFTLIDSGADGYLLKDTEPDVLLEQIKRIAQGEVI 137

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+    N+             LT RE++ L  I+ G ++ +IA  L IS  TV  +I ++
Sbjct: 138 LSDSIKNLLLERKHTVDPMDSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNL 197

Query: 225 MRKTATKTRSGAIA 238
           +RK    +R  A  
Sbjct: 198 LRKLNVHSRVAATV 211


>gi|291539797|emb|CBL12908.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis XB6B4]
          Length = 215

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y     + A ++  ++ +      I      +  L+    + M    D    K   LT
Sbjct: 100 NGYLLKDSESAELKKAILAVVNGEDYI------QPSLIPVLNSKMLDR-DSDSSKIESLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            RE+E L  +S G  + EIA  L IS  TV N++++I +K     R+
Sbjct: 153 RRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRT 199


>gi|282801760|gb|ADB02863.1| AzicR5 [Kibdelosporangium sp. MJ126-NF4]
          Length = 214

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 7/193 (3%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E +G++       DL +  + D +V +D        +A++       +      +   V
Sbjct: 27  IEVIGSAADGQAAVDLARRLRPD-VVLTDIRMPRRDGIAVTRALAGVGITD---PIRVVV 82

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
             T   +      +    C     V +    ++L+         D L    +      ++
Sbjct: 83  LTTFDLDEYVYDALHAGACGF---VLKRSGPVLLVEAVRAAFHGDTLISPSVTTRLLRHL 139

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D        LT RE E    +++G T+ EI   L IS  T   ++A++ RK   + 
Sbjct: 140 TGRDDEPDALAEPLTAREREVAGLVADGLTNAEIGTRLFISAGTAKTHVANVQRKLGVRN 199

Query: 233 RSGAIAYAVRNNI 245
           R G   +A    +
Sbjct: 200 RVGIAIWAQARGL 212


>gi|262403032|ref|ZP_06079592.1| transcriptional regulator VpsT [Vibrio sp. RC586]
 gi|262350531|gb|EEY99664.1| transcriptional regulator VpsT [Vibrio sp. RC586]
          Length = 224

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           IL+D +W    LA      ++S +         +LT RE + +  +  G ++ EIA  L 
Sbjct: 125 ILQDEMWLARKLAQEYILHYRSGNSVVTSQMYAKLTKREQQIIKLLGSGSSNIEIADKLF 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217


>gi|83716249|ref|YP_439875.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650074|gb|ABC34138.1| autoinducer-binding transcriptional regulator, LuxR family,
           putative [Burkholderia thailandensis E264]
          Length = 238

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 112 VFHTLPEN-ITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------- 162
           VF ++ +      +    RY  +L+       +G +      R I+++ L +I       
Sbjct: 93  VFESMADGLWAETSDQGVRYGWALSVRDRWGAVGTLKFARGTREIVQEELDDIEPEMIWL 152

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA          +   G+   ++  E + L W +EGKT  EI+ IL +S   +N +I 
Sbjct: 153 AHLAHDTIGSLMRDETIPGEIARVSLVERQILLWTAEGKTVSEISSILQMSVRNINFHIQ 212

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K     ++ A   A    ++
Sbjct: 213 NVVGKLGATNKTHAAVKATLVGLI 236


>gi|332663404|ref|YP_004446192.1| LuxR family ATP-dependent transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332218|gb|AEE49319.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 147

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + + L+ RE E LT I++G ++ EIA  L +S NT+  + +++  K   K R+ A+  A 
Sbjct: 83  EKYNLSKREYEVLTLIAQGYSNQEIAETLFVSLNTIKTHSSNVFLKLDVKRRTQAVQKAK 142

Query: 242 RNNIV 246
              ++
Sbjct: 143 EIGLL 147


>gi|302521872|ref|ZP_07274214.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Streptomyces sp. SPB78]
 gi|302430767|gb|EFL02583.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Streptomyces sp. SPB78]
          Length = 274

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 12/168 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCS 132
           P  L+  + +  +D  + + +          R   L    F          A   + +  
Sbjct: 104 PDVLLMDIRMPRRDGLWALAELGRRGLLGQGRSRVLMLTTFDLDAYVDDALAAGASGFLL 163

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +         +       I  +  + +   +  D    +  +LT REV+
Sbjct: 164 KNSSYEELTGAVRAAAAGHSALSPAVTQRI--IEGHLSGRRQPSDQELARLGDLTEREVD 221

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L  I +G ++ EIA  L +S +TV  +++ ++ KT  ++R+ A   A
Sbjct: 222 VLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLA 269


>gi|259418455|ref|ZP_05742373.1| transcriptional regulatory protein DegU [Silicibacter sp.
           TrichCH4B]
 gi|259345850|gb|EEW57694.1| transcriptional regulatory protein DegU [Silicibacter sp.
           TrichCH4B]
          Length = 212

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE   L  ++EGK + EI   L ++  TV  ++ SI  K     R+ A+  A   N
Sbjct: 151 PLSDRETTVLNLLAEGKPNKEIGSDLNLAEPTVKMHVKSICTKLGASNRTQAVIVARDLN 210

Query: 245 IV 246
           ++
Sbjct: 211 LI 212


>gi|239945308|ref|ZP_04697245.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991767|ref|ZP_04712431.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448770|ref|ZP_06588160.1| two component system DNA binding response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291351717|gb|EFE78621.1| two component system DNA binding response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 217

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA   A+     D        LT RE+E L  + EG ++ +I+  L +S+ TV +++ 
Sbjct: 134 SALAPSVAHRLM--DRMRTPAEALTRRELEVLQLVGEGLSNLQISKRLFLSQATVKSHLV 191

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +R+ A+A A    ++
Sbjct: 192 HIYAKLGVDSRTSAVAAATARRLI 215


>gi|269929059|ref|YP_003321380.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788416|gb|ACZ40558.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 214

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ REVE L  +  G ++ EIA  L IS  TV N+++ +  K   + R  A+ +A+++
Sbjct: 141 LPLSTREVEILDCMVRGLSNREIAEALFISEQTVKNHMSRLFHKLHVRDRLQAVLFAIQH 200

Query: 244 N 244
            
Sbjct: 201 G 201


>gi|120406420|ref|YP_956249.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119959238|gb|ABM16243.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 212

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 40/78 (51%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A + +S         +LT REVE L  ++ G ++++I   L IS  T   ++++IMRK 
Sbjct: 135 AAAVVRSMSGRSESRAQLTDREVEVLRLLAAGLSNNKIGERLYISATTAKFHVSNIMRKL 194

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+  A +  ++
Sbjct: 195 EVSRRAEAVYAASKRGLI 212


>gi|239930061|ref|ZP_04687014.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438397|ref|ZP_06577787.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341292|gb|EFE68248.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 227

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 6/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTLPENITPPAGMDNR 129
            +     P  +V  + + E D              P  L    F              + 
Sbjct: 42  RLAEELAPDVVVMDVRMPELDGIAATRIITGREDAPRVLVLTTFDLDAYVFEALRAGASG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +       A +  G+ ++     ++       +    A  A           +   LT R
Sbjct: 102 FLLKDVHAAELLHGIRVVAAGESVLAPSATRRLIGHYASGAVTGIGGGSTPRELDGLTAR 161

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E   L  ++ G T+ EI   LGI+  TV +++ +++RK   + R  A   A    +
Sbjct: 162 ERSVLALVASGLTNAEIGGQLGITVGTVKSHVNALLRKLGLRDRVQATILAYDLGL 217


>gi|73748274|ref|YP_307513.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|147669054|ref|YP_001213872.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|289432323|ref|YP_003462196.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT]
 gi|73659990|emb|CAI82597.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
 gi|146270002|gb|ABQ16994.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
 gi|288946043|gb|ADC73740.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. GT]
          Length = 232

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L   S+G ++ EIA  L +S  TV  ++++I  K     R+ AI    R  
Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213

Query: 245 IV 246
            V
Sbjct: 214 YV 215


>gi|330891428|gb|EGH24089.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 222

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144
            M +        +LQ+       V  T+ ++        +     Y         +  GL
Sbjct: 59  RMPVLNGLGAARILQQRMPDLKVVIFTMDDSTDHLEAAISAGAVGYLLKDPSRDEVIAGL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         + A     M +           LT RE + L  +  G ++ 
Sbjct: 119 QRVARGEEALNST------VSARLLRRMTERNTSGAALPESLTPRERQVLGLVGGGFSNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 173 EIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|318041781|ref|ZP_07973737.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 228

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 75/213 (35%), Gaps = 15/213 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE-- 94
             +   +     +  L E   +S   L+   +  EQ   S +  + P++L+ C    E  
Sbjct: 26  GKVALALKGRFFLRCLCESFSSST--LIGCAVTDEQSCLSYLQQE-PYELLICTDFLENG 82

Query: 95  -KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
              +     ++       V   L + I       +   ++  +           F + + 
Sbjct: 83  NGFELARKARQCQPQLKVVVLALGDAIPVEYAEASWLEAVVAEAD---------FIEDQK 133

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
            L   +  +    +Y++   +S  + +     LT RE E L  ++ G T  EIA  L +S
Sbjct: 134 PLEAAVMAVMGHHSYRSPSLRSGQLPYLSCPRLTPREYEVLDLLASGLTDREIAEQLVVS 193

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             T   Y   +++      R  A+   +R  +V
Sbjct: 194 EETARTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226


>gi|300782878|ref|YP_003763169.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792392|gb|ADJ42767.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 1/164 (0%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  ++  + + E D      +   E    V      ++        R  +  F +   R 
Sbjct: 48  PDVVLMDVRMPEMDGIEATRRICAETDVRVLMLTTFDLDEYVYSALRAGASGFLLKDTRP 107

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
             + L     +   D L    +     A   +       +   +T RE E LT I+ G +
Sbjct: 108 ADL-LAAIEVVASGDALLAPSVTRRLVAEFARLPSGPVTRLDGVTAREQEVLTLIARGLS 166

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +DEIA  L +   TV  +I  ++ K A + R+  +  A  + +V
Sbjct: 167 NDEIAARLHLGIATVKTHIGRLLHKLAARDRAQLVIAAYESGLV 210


>gi|291004781|ref|ZP_06562754.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 212

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 3/134 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F      +    G    +         +   +  +     ++         LL  +    
Sbjct: 77  FDLDEYALAALRGGAGGFLLKDTPPDGLVTAVRSVASGDAVVSPSVTRR--LLDRFLGGD 134

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             +       D  LT RE E L  +++G ++ E+A  L +S  T+  ++  I+ K   + 
Sbjct: 135 GGALRDPGVLDV-LTEREREVLVLVAKGLSNAELASRLFLSEATIKTHVGRILSKLDIRD 193

Query: 233 RSGAIAYAVRNNIV 246
           R  A+  A    +V
Sbjct: 194 RVQAVVLAYETGLV 207


>gi|254425219|ref|ZP_05038937.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
 gi|196192708|gb|EDX87672.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
          Length = 220

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REV+ L  +++G ++  IA +L IS NTV  +I++I+ K    +R+ A++  ++  
Sbjct: 157 PLTTREVQVLNQLADGLSNKAIAQVLTISENTVKFHISAILAKLDVSSRTEAVSVGIKAG 216

Query: 245 IV 246
           +V
Sbjct: 217 LV 218


>gi|148549711|ref|YP_001269813.1| autoinducer-binding domain-containing protein [Pseudomonas putida
           F1]
 gi|148513769|gb|ABQ80629.1| transcriptional regulator, LuxR family [Pseudomonas putida F1]
          Length = 235

 Score = 88.9 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 11/161 (6%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             M +   D  Y    +  E  C   H L    T  +  D ++      VAR    + +L
Sbjct: 84  STMPVLWTDDLYKEAPQFRETAC--QHGLRHGWT-QSLHDQQHNESQISVARPNGHIDML 140

Query: 148 FPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +      L      +L  +  N             +++ RE+E L W + GKT+ +
Sbjct: 141 ELYDKAGSVQWLCHTLHAVLGEHHLNAL------CPPQPKMSERELEVLKWSAAGKTAAD 194

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +A IL +S++TVN +I S++ KT    ++GAIA A     +
Sbjct: 195 VASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|260775603|ref|ZP_05884500.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608784|gb|EEX34949.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 215

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  Y+  +            +LT RE++ L  +  G ++ +IA  L IS  T
Sbjct: 129 PRKVAAQLLHYYRHVVL---SQTAPATVDLTSREIQILRCLKTGASNMQIAEDLFISEFT 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243
           V +++  I +K + K R  AIA+A ++
Sbjct: 186 VKSHLYQIFKKLSVKNRVQAIAWANQH 212


>gi|302517773|ref|ZP_07270115.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302426668|gb|EFK98483.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 219

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 4/107 (3%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWISE 199
           L+       I+   R+   G    + A + +  D H G+       LTGRE E L  ++ 
Sbjct: 104 LLKRARPAEIVHAVRVVAAGDSLLFPAAVRRLADHHGGRAPAPFPGLTGREGEVLRLMAR 163

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 164 GLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 210


>gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 225

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 76/199 (38%), Gaps = 22/199 (11%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107
           +Y+    + ++  +  +E     I+  D P  ++  + + E D Y   +++  +      
Sbjct: 37  DYLEFRGYEVITAENGREAL--EILEHDVPDMIICDVMMPEMDGY-TFVEQVRQNERTSW 93

Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              LF        + +       + Y    F+   +   +         + +   W+   
Sbjct: 94  IPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTIRWKEHQ 147

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
               +             D +LT  E++ + +++ G  + EIA  L +S+ TV ++++++
Sbjct: 148 AKGGENGSRIQVPF----DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 203

Query: 225 MRKTATKTRSGAIAYAVRN 243
           + KT    R+    +A+ N
Sbjct: 204 LGKTNLHNRTELARWAIEN 222


>gi|240171004|ref|ZP_04749663.1| two-component transcriptional regulatory protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 218

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 7/162 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           +R    +       VL+        V     E       +      Y   +   A +   
Sbjct: 59  MRLADGNGVQATTEVLEVSPATRVLVLSASDEREDVLEAVKAGATGYLVKSASKAELSDA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +        +  L   +     +          LT RE E L ++++G ++
Sbjct: 119 VRATAAGRAVFTPS----LAGLVLGEYRRIATSTDSGPARPSLTERETEVLRYVAKGLSA 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 175 KQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216


>gi|196230839|ref|ZP_03129700.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225180|gb|EDY19689.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 221

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLL 147
            +S  +    + Q+  +    +     ++             Y   T  +  I   +   
Sbjct: 66  GMSGIEGLALLRQQARKTALVILTVFEDDDKIFRAICAGAAGYLLKTSSIEDIAAAIRTA 125

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  I          +A     MF   +    +D+ LT RE E L  + +GKT  E A
Sbjct: 126 AAGGSPINPT-------IARRVLEMFSKANP-PARDYGLTPREQEILEVLVQGKTIKEAA 177

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  T + YI S+  K   ++RS A+A AV   +V
Sbjct: 178 AALKISYYTADEYIRSVYDKLQVRSRSSAVAKAVSEGLV 216


>gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 242

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 23/186 (12%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP------PAGMDNRYC 131
            P  ++  + + + D Y  +L++  E       PV     + +T        AG+D+ Y 
Sbjct: 58  MPDVVITDVMMPQCDGY-ELLRQLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDD-YI 115

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---AYQANMFKSYDVHWGKD- 183
              FD   +   +  +  +   +L +       ++G +A       +M    D +  +  
Sbjct: 116 PKPFDPDELVARVKNVVKRQERLLAEAARFADTDVGQMAKQITEIKSMLTQNDSNSSRKD 175

Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                 T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA
Sbjct: 176 LVIPSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYA 235

Query: 241 VRNNIV 246
           + N++V
Sbjct: 236 LENHLV 241


>gi|21232249|ref|NP_638166.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|21114010|gb|AAM42090.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 258

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 150 KGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEI 206
           +   +   +L    LLA A+QA   +  D    +     LT RE ECL + ++G T+  I
Sbjct: 157 EAPRLAEAQLPPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSAKGMTAKSI 216

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L  S  TVN ++ S  RK   + R  A+   +   ++
Sbjct: 217 AATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 256


>gi|302334932|ref|YP_003800139.1| transcriptional regulator, LuxR family [Olsenella uli DSM 7084]
 gi|301318772|gb|ADK67259.1| transcriptional regulator, LuxR family [Olsenella uli DSM 7084]
          Length = 245

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 11/221 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS--IVSSDW 82
            + +R DL +  +  +           LT     +H  +    + +   LD   ++ S  
Sbjct: 31  RILSRDDLKSLTVESNGHT------RCLTNR--GAHPDICERFILRVIDLDPGDVMVSMC 82

Query: 83  PFDLVRCMALSEKDKYYNV-LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           PF L+  +    K  +  +  ++    F  V +   E          R  +       + 
Sbjct: 83  PFGLLSAIVPLGKSMWAGLHEEKARYFFLAVHNPAYEGAGGVEVEQKRTVTSIVSGMDLH 142

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        +     L    L    Q ++  +  V   +   LT RE E +  +  G 
Sbjct: 143 DKIEFEEKVRLVASVFDLVFSILTEQEQQDLIATGAVGMAELRRLTKREREVMRLVCVGM 202

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ++  +A  L IS +TV  +++SI++K     R+    Y  +
Sbjct: 203 SNQRVAEELFISEHTVKLHVSSILKKLNLANRTQLAIYGAK 243


>gi|288574415|ref|ZP_06392772.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570156|gb|EFC91713.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 211

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +     G +L       + +  L  +     Y  +   S      +  +L+ RE E L 
Sbjct: 95  SLRAGAKGFLLKTTSPEALAK-ALQTVVSGGLYLDSEVASAMGEVPQMEDLSPREREVLL 153

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + + G +S E+A  L IS  TV  ++ASI  K     ++ A+  A++  ++
Sbjct: 154 FAARGLSSKEVASHLFISERTVQTHLASIYDKLGAHNKTEAMLLALKYGLL 204


>gi|238759424|ref|ZP_04620588.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
 gi|238702321|gb|EEP94874.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
          Length = 202

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 17/200 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           ++V       + +  ++  D  FD+V       +     V  +P   L       +    
Sbjct: 1   MIVDDHPLMRRGIKQLLELDSIFDVVAEANNGGEAIIEAVKHQPDVILLDLNMKGMSGLE 60

Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------ 164
           T       G+D R   LT   AR  +  ++       +L+D   EI L            
Sbjct: 61  TLKTLRNEGIDARIIVLTVSDARSDVYAVIDAGADGYLLKDSEPEILLENIRQAAAGENV 120

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            +   A    S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +I ++
Sbjct: 121 FSNEVAQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNL 180

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           +RK   ++R  A    + N 
Sbjct: 181 LRKLNVRSRVAATIMYIENK 200


>gi|297563606|ref|YP_003682580.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848054|gb|ADH70074.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 252

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 41/78 (52%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    + D       + T RE + +  ++ G ++ EIA +LG+S  T+ ++++S++ K 
Sbjct: 166 AAVCVGADDPDSCWKEQFTDREKDVVALVATGASNAEIAGVLGLSETTIKSHVSSVLAKR 225

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + R   + +A R+ +V
Sbjct: 226 GLRNRVQLVVWAFRSGLV 243


>gi|317127430|ref|YP_004093712.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472378|gb|ADU28981.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 211

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 26/183 (14%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +R  +    +   ++ S WP   V  +     D Y                 L       
Sbjct: 55  IRMPVMDGLEAARLIRSRWPDMKVFILTTFNDDNYA-------------LEALKSGACGY 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              D     L   +     G + L       +  RL              K        D
Sbjct: 102 MLKDAEPEELIRSIRSCLAGGLSLQDHVAAKVMPRL-------------IKQSTEEVKVD 148

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE++ +  I EG+++ EIA+ L +S  TV N+I+ I+ K   + R+    YA+++
Sbjct: 149 PSLTPRELDIIRKIGEGRSNKEIAMQLSLSVGTVKNHISIILDKLELRDRTQIAIYAIKH 208

Query: 244 NIV 246
           ++V
Sbjct: 209 HVV 211


>gi|223934665|ref|ZP_03626585.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896620|gb|EEF63061.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 38/67 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +L+ REV+ L+ ++ G  + EIA +L I+ +T  +++ SI+ K     R+ A+  
Sbjct: 141 RNSFEQLSPREVQVLSELARGLANKEIADVLNITEHTTKDHLKSILAKLRVADRTEAVTV 200

Query: 240 AVRNNIV 246
           A++  I+
Sbjct: 201 ALQRGII 207


>gi|298491036|ref|YP_003721213.1| LuxR family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298232954|gb|ADI64090.1| transcriptional regulator, LuxR family ['Nostoc azollae' 0708]
          Length = 91

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              G    L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   +
Sbjct: 4   SESGTPVSLSDRELQIIDLVAGGLTNQEIAAKLEISKRTVDNHISNILTKTKTDNRVALV 63

Query: 238 AYAVRNN 244
            +A++  
Sbjct: 64  RWALQWG 70


>gi|134287657|ref|YP_001109823.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134132307|gb|ABO60042.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 312

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 62/177 (35%), Gaps = 7/177 (3%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           L     L  + +   IV +D         A      Y      P +   P      +  T
Sbjct: 124 LYAEAALSLDTRAALIVGADGTIRWQSPQAARHIAAYTTAHDAPADARQPTNARDTDAPT 183

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--- 178
               +   +      +AR   G  +       I R      G   +    + K  D    
Sbjct: 184 RLPALLRTWFVDW--LARGAPGDAVHEFSSGQIRRSASATRGPEPSEWIVILKERDDTVH 241

Query: 179 --HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                + F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR
Sbjct: 242 CNALAERFGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298


>gi|312891076|ref|ZP_07750599.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296384|gb|EFQ73530.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 214

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 5/176 (2%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRY 130
           L  +   +    ++  M +   +    + +    +   +   L      I       + Y
Sbjct: 40  LSWLAEGNSATLILTDMNMPGLNGLGLIKEMKANMPTVILSMLDHENYVIEAITAGAHGY 99

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              + +   +  GL  +   G+ I  +      LL         +         EL+ RE
Sbjct: 100 LLKSINKDELLFGLRHVADGGKYICME--LTFKLLDKLSGYSPINEPHKTIIAIELSERE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ISEG T++EIA  L  SR TV  +  +++ KT  K     I +A++N ++
Sbjct: 158 KEVLDLISEGYTNNEIADKLFTSRRTVEGHRQNLIEKTGVKNTPSLIRFALQNGLI 213


>gi|297156497|gb|ADI06209.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 219

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 42/62 (67%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GREVE L  ++EG+++  I V +G+S  TV +++A I RK  T  R+G +A A+R  
Sbjct: 157 ELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRTG 216

Query: 245 IV 246
           I+
Sbjct: 217 II 218


>gi|295840294|ref|ZP_06827227.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295827900|gb|EFG65696.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 231

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 10/170 (5%)

Query: 83  PFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLTFD 136
           P   V  +A+      +    L R       +  T+ +N              Y   +  
Sbjct: 64  PDLAVLDIAMPRMTGLQAARELSRALPGLRMIVLTMYDNEQFFFEALGSGAGGYVLKSLA 123

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +             +         L+  Y     +  D+  G    LT RE E L  
Sbjct: 124 DRDLIEACRAAMRDEPFLYPGATG--ALIRNYLDRARRGEDLSGGSP--LTPREEEILKL 179

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG +S +IA +L IS  TV  + A+ + K   K R     YA+R  +V
Sbjct: 180 VAEGHSSKDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 229


>gi|302864805|ref|YP_003833442.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302567664|gb|ADL43866.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 220

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +     + A +  G+ ++     +I         L+A + A           + 
Sbjct: 94  RAGASGFLVKDTEPAELIHGVRVVARGDALIAPAVTRR--LIAEFAARTRHPD--PGPRL 149

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  ++ G ++DEIA  L +S  T   +++ IM KT  + R+  +  A  +
Sbjct: 150 NALTEREREVLALVAAGLSNDEIAARLVLSPATAKTHVSRIMTKTRVRDRAQLVVLAYES 209

Query: 244 NI 245
            +
Sbjct: 210 GL 211


>gi|256391849|ref|YP_003113413.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256358075|gb|ACU71572.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 79/241 (32%), Gaps = 26/241 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +++  +D+   + +  + +    +  +       +       +   V     + V
Sbjct: 1   MSALRVLIVDDDDLMRAGLCAVLSSDTTIEVVAEAADGHAAVQAAARVLPDV---ILMDV 57

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R  +         + + WP   V  +   E D Y             V+  L    +   
Sbjct: 58  RMPVLDGIAATRQIVAAWPRARVLILTTFEDDDY-------------VYGALAAGASGFL 104

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
               R   L   +  I  G  LL P     + DR+ E                    +  
Sbjct: 105 LKRTRPEHLIAAIHTIAGGEALLSPAVTRTVIDRMIE----------QPARDPRTMRRLS 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  ++ G ++ EIA  L +S +TV  ++  I+ K   + R  A+  A    
Sbjct: 155 ALTPRERDVLELVARGLSNPEIAQTLVVSESTVKTHMKRILDKLDLRDRVQAVILAYEAG 214

Query: 245 I 245
           +
Sbjct: 215 V 215


>gi|194365353|ref|YP_002027963.1| LuxR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348157|gb|ACF51280.1| transcriptional regulator, LuxR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 234

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 18/172 (10%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
             ++ SD PF   +              +R   +  P    L     P  G      +++
Sbjct: 79  RHVLDSDAPFFWSKRQGARG--------ERYQVVKQPRGDGLHGLQVPVFGTTGLEGAIS 130

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
           F  A +                  L E    AA++     +          L+ RE E L
Sbjct: 131 FAGAAVDASARARL----------LLEAVATAAFRTARRLAEAPAELPVGALSAREREVL 180

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W++ G+   EIA  LG+S  TV N++    ++    T + A+  A R   +
Sbjct: 181 RWVAAGRRQAEIAATLGLSARTVENHLRRARQRLGVATTAQAVRAASRRGEI 232


>gi|86741939|ref|YP_482339.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86568801|gb|ABD12610.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 213

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 14/131 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +          + R   L   +  +  G  LL P     + DR+ +           
Sbjct: 93  FSAIMAGAAGYVLKEIRGNDLVSAIRTVAAGGSLLSPSVTRRVLDRMRQ----------- 141

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D        L+ RE E L  I+EG T+ +I   + +S  TV NY++SI+ K    +
Sbjct: 142 GPREDPTLA---SLSAREREILQHIAEGLTNRQIGTRIHLSEKTVKNYVSSILEKLGMTS 198

Query: 233 RSGAIAYAVRN 243
           R+ A  YA++ 
Sbjct: 199 RTQAAVYALKK 209


>gi|56963198|ref|YP_174929.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909441|dbj|BAD63968.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 210

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 38/82 (46%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +AA               D  LT RE   LT I EG  + EIA  LG+S  TV N  + I
Sbjct: 129 VAAKVVPTLLQNQEEPSIDPSLTPRERAILTCIGEGLNNKEIAERLGLSVGTVKNQTSHI 188

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K A + R+    YA+R+ +V
Sbjct: 189 FDKLALRDRTQLAIYAIRHRLV 210


>gi|308178154|ref|YP_003917560.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307745617|emb|CBT76589.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 222

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +T        Y + +   A I   +  +     +           L
Sbjct: 86  RFLALSVSDAAQDVVTVIRSGARGYVTKSISGAEISDAVRRVAGGDAVFSP-------RL 138

Query: 166 AAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           A +  + F S       D EL   + RE++ +  I+ G +  E+A  L IS  TV ++++
Sbjct: 139 AGFVLDAFGSSTPVAEIDEELDLLSDRELQVMRLIARGYSYKEVAKELFISVKTVESHVS 198

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK     R     +AV   I+
Sbjct: 199 NVLRKLQLSNRHELTRWAVDRKIL 222


>gi|302867758|ref|YP_003836395.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302570617|gb|ADL46819.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 222

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D R   L   V  +  G  LL P     L DR           A+
Sbjct: 91  VYAALRAGASAFLLKDTRPADLAEAVRVVARGEALLAPTVTRRLLDR----------YAD 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          LT RE E LT  +   ++ EIA  L +S  TV  ++++I+ K   +
Sbjct: 141 RLPAPAPAGDVLAVLTAREREVLTLTARALSNAEIAARLHLSTATVKTHVSAILTKLGLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 201 DRIQAVVLAYDTGLV 215


>gi|77460927|ref|YP_350434.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens
           Pf0-1]
 gi|77384930|gb|ABA76443.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 911

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 5/182 (2%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           Q+  LD I       +    + L    +    L     L   V   L       A     
Sbjct: 729 QQALLDVIQGQPMLAEGRLNVLLENGQQTGRQLLSVMALTQKVVLLLAGGRESEARKALG 788

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIIL-RDRLWEIGLLAAYQANMFKSYDVHWGKD----F 184
                     ++   +LL      +  + +L             F    V    +     
Sbjct: 789 QALEAAAGGVLQPFEILLKEHSEWLRGQLQLNAATAFCQQLLEHFPQASVRSQAESVTTE 848

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    
Sbjct: 849 QLSSRELAVLRLIAQGCSNQEISDQLFISLHTVKTHASHINSKLGVERRTQAVARAKELG 908

Query: 245 IV 246
           ++
Sbjct: 909 VL 910


>gi|158313488|ref|YP_001505996.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158108893|gb|ABW11090.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 217

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +R G  LL P     L +R      +AA    
Sbjct: 87  VYAALTAGASGFLLKDVSPEQLVAAVRLVRAGDALLAPTITRRLVERFASPERVAAATHR 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          LT RE+E L +++ G ++ E+A    +S  TV  ++A I+ K   +
Sbjct: 147 DLAT----------LTPRELEVLRFLARGLSNAELAARFQLSEATVKTHVARILGKLRLR 196

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 197 DRVQAVVVAYETGLV 211


>gi|271963471|ref|YP_003337667.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506646|gb|ACZ84924.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 205

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ REVE +  +++G ++ +IA  L IS  TV +++  I  K     R+GA+  
Sbjct: 137 RSPRASLSPREVEIVLLVADGLSNRQIARELFISEATVKSHLVHIYAKLEVDNRTGAVKV 196

Query: 240 AVRNNIV 246
           A R  ++
Sbjct: 197 ARRRGLL 203


>gi|284029107|ref|YP_003379038.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808400|gb|ADB30239.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 216

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 11/220 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++ +D        +  L +       VG +        L +E + D +V  D    +
Sbjct: 1   MIRVLVVDDQDLVRAGLRLLIDNTDDLRVVGEASDGREALALAREHQPD-VVLMDLQMPV 59

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  +  +   +   +L+    +    F    + +       + Y         +R  +  
Sbjct: 60  MGGVETTAAIRADPLLKDTPVVVLTTFDHDADVVDAVQAGASGYLLKDLAADELRGAIRT 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
               G  I      ++  L  ++ +   S  V       LT RE++ L  +  G +++EI
Sbjct: 120 AVTGGAPIAP----KVAKLMMHRISRMPSRKVQEETLAGLTARELDILAHVGRGLSNEEI 175

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L +S  T   Y++ ++ K   + RS  +  A +  +V
Sbjct: 176 GQALFLSPETARTYVSRLLAKLGVRDRSQLVVLAHKAGLV 215


>gi|224542843|ref|ZP_03683382.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524239|gb|EEF93344.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM
           15897]
          Length = 224

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 64/166 (38%), Gaps = 6/166 (3%)

Query: 86  LVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVAR 139
           ++  + +   D       V  +  +    +  T  ++    + +    + Y      +  
Sbjct: 51  ILMDIRMPGMDGVMATKEVKSKYPDTKIIILTTFDDDDFVFSALRYGASGYLLKGVSMDE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   ++ +   G +I  D   ++  + +       +  V       L+  E + +  +  
Sbjct: 111 LYKAVVTVNTGGAMINPDIATKVFSMFSKMQQNNYTIQVDEKDVETLSKPEWKVIQHVGY 170

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G ++ EIA  L +S  TV NY++SI+ K   + R+    +AV + +
Sbjct: 171 GLSNKEIAQKLFLSEGTVRNYLSSILSKLNLRDRTQLAIWAVESGL 216


>gi|91789053|ref|YP_550005.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698278|gb|ABE45107.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 895

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 43/103 (41%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L L    G     D L      A  +               +LT RE+E L  + EG  
Sbjct: 782 ALTLFEQLGARPAADGLRRQLRAAGLRGLPRGMRPSTQTNPHQLTAREIEVLLLLCEGLK 841

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L  S  TV++++A++  K    +R+ A+A A+   I
Sbjct: 842 NSEIAERLCRSVRTVDHHLAAVFTKLGVASRTEAVAAALHAGI 884


>gi|33863672|ref|NP_895232.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33635255|emb|CAE21580.1| possible DNA-binding response regulator [Prochlorococcus marinus
           str. MIT 9313]
          Length = 232

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 74/181 (40%), Gaps = 7/181 (3%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL---FCPVFHTLPENITPPAG 125
            +++ L  + SS+   DL+ C  L E     +++++  +L      +       +     
Sbjct: 46  GEDETLSCLKSSN--ADLLICTDLLESGNGPSLVRKAKQLKPDLKALMLIQRPLLRTLLD 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +C      A   +G   L      I  D  +   ++A    +          +   
Sbjct: 104 AIEAHCDGLC--AHELVGSGTLLAALSAIESDGTYLDSVVAGVLRHGRLGNGKSSRQIDN 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I +G ++  IA  L +S +TV +++ ++++K   + R+ A+  A R+ +
Sbjct: 162 LSLREGDVLRGICKGMSNQNIADELYLSIDTVKSHVHNLLQKLPARDRTHAVVVAFRDGL 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|317123319|ref|YP_004097431.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587407|gb|ADU46704.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM
           43043]
          Length = 985

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           RL    LLA  + +             ELT RE+E L  ++ G ++ +I   L IS  TV
Sbjct: 898 RLRARPLLA--ELDALAPRAPAAATAVELTPRELEVLALVARGLSNGQIGKQLYISTKTV 955

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++++++ K     R+ A A A    +V
Sbjct: 956 SVHVSNLLAKLGASGRTEAAAIARDRALV 984


>gi|311064838|ref|YP_003971564.1| two-component system response regulator [Bifidobacterium bifidum
           PRL2010]
 gi|313140925|ref|ZP_07803118.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|310867158|gb|ADP36527.1| Two-component system response regulator [Bifidobacterium bifidum
           PRL2010]
 gi|313133435|gb|EFR51052.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 238

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +L+A+Q           G+D EL   +GRE E +  I+ G T  E+A  L IS  TV  +
Sbjct: 153 VLSAFQGAPMDGAGGARGRDEELDLLSGREQEVMRLIARGYTYKEVAAELFISIKTVETH 212

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +++++RK     R+    +A    IV
Sbjct: 213 MSNVLRKLQLSNRTELTRWAADRRIV 238


>gi|225175001|ref|ZP_03728998.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169641|gb|EEG78438.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 205

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 14/171 (8%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLM 145
             +   E  + ++      +L  P  H L + I     +++  +Y  LT    +  I   
Sbjct: 34  NGLEAMEVLEKHSPDVALVDLRLPGEHGL-DIIEKARSINSTCKYIVLTSYATKEEIKQA 92

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSY-----------DVHWGKDFELTGREVECL 194
           +       IL++ L E  + +    +  + Y           + +  K  ELT RE+E L
Sbjct: 93  MALEVDGYILKETLPEELITSVRMIHKGRKYFDPVIVQHALEEKNEDKLSELTTREMEVL 152

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++S G  + +IA  L IS +TV  ++  I+ K   + R+ A  Y V   +
Sbjct: 153 KFLSRGLNNKKIAEDLFISEHTVKKHVGQILTKLELQDRTQAALYGVSQAL 203


>gi|146276004|ref|YP_001166164.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
 gi|145322695|gb|ABP64638.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM
           12444]
          Length = 248

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLML-LFPKGRIILR------DRLWEIGLLAAYQA 170
           +                  + R  +G ++    +   + +      +    + L      
Sbjct: 108 DCSGVAKSFGGEAIVAPVHLPRGIVGAVVWCSREPIGVAQVFAGKAEHFQALALRLVATH 167

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N  +    + G   +LT REV+CL W + GKT  EI +IL +S +TV  ++ +   K   
Sbjct: 168 NEARGRPRNAGVPQKLTRREVQCLRWAAAGKTDGEIGIILDLSHSTVRFHLRNAAEKLGA 227

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ +I  A     V
Sbjct: 228 TGRAQSIQLAAGLGYV 243


>gi|325576790|ref|ZP_08147405.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160996|gb|EGC73114.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 209

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           L++       + +  +V  +  F++V  +    +     + + P   +       L    
Sbjct: 8   LIIDDHPLMRRGIKQLVELEENFEVVADVGSGTEGISIAIQESPDLIILDLNMKGLSGLD 67

Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------ 164
           T       G+D R   LT   A+  I  ++       +L+D   ++ L            
Sbjct: 68  TLKGLRAEGVDARILILTVSDAKNDIFTLIDAGADGYLLKDTEPDVLLEQIKRIAQGEVI 127

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+    N+             LT RE++ L  I+ G ++ +IA  L IS  TV  +I ++
Sbjct: 128 LSDSIKNLLLERKHTVDPMDSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNL 187

Query: 225 MRKTATKTRSGAIA 238
           +RK    +R  A  
Sbjct: 188 LRKLNVHSRVAATV 201


>gi|229490955|ref|ZP_04384788.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
 gi|229322071|gb|EEN87859.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
          Length = 212

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 4/153 (2%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +     +R   L    F          A   + +     + A +   +  +   
Sbjct: 62  GIGATQQIVKAGRRARILVLTTFDDDDHLYPALAAGASGFFVKDTEPAELLGAIRRIAEG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +   + L  +      +A +    D    +   LT RE + L  ++EGK++ EIA  L
Sbjct: 122 EMVFTPELLRRV----VDRAVIGGIADTAATEKVPLTDRESQVLALVAEGKSNQEIAETL 177

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +   TV  ++A++M KT    R     Y ++N
Sbjct: 178 HLGVTTVKTHVANLMSKTGCDNRVRLAVYHLQN 210


>gi|158425732|ref|YP_001527024.1| two component transcriptional regulator [Azorhizobium caulinodans
           ORS 571]
 gi|158332621|dbj|BAF90106.1| two component transcriptional regulator [Azorhizobium caulinodans
           ORS 571]
          Length = 310

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           ++ E  +L      +    +        +T RE E L WI+ GK + +IA ILG+S  TV
Sbjct: 220 QIGEQEVLLRVTDEVRVRDEDILRTALGITQREAEVLLWIARGKPNRDIAEILGLSPRTV 279

Query: 218 NNYIASIMRKTATKTR 233
           N ++  I  K   + R
Sbjct: 280 NKHLEQIYAKIGVENR 295


>gi|148546040|ref|YP_001266142.1| regulatory protein LuxR [Pseudomonas putida F1]
 gi|148510098|gb|ABQ76958.1| regulatory protein, LuxR [Pseudomonas putida F1]
          Length = 905

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLL---AAYQA 170
           ++    G + +   L   +     G     +  L  K    L ++L         A    
Sbjct: 769 SLLLDEGKEGQAAQLLPSLLEAAHGGVMQPMQPLLEKHPQWLHEQLQAGAACPVQAELLK 828

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++        G    L+GRE+  L  I++G ++ +I+  L IS +TV  + + I  K   
Sbjct: 829 HLPPVPIASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGV 888

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+ A+A A    ++
Sbjct: 889 ERRTQAVAKAKSLGLL 904


>gi|119485367|ref|ZP_01619695.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119457123|gb|EAW38249.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 250

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE+E L  I  G ++ EI+  L ++  TV  ++ SI+ K   + R+ A   A+R+
Sbjct: 187 YPLTERELEVLELIVGGCSNAEISEKLYVTVGTVKTHVRSILNKLCVEDRTQAAVRALRS 246

Query: 244 NIV 246
            +V
Sbjct: 247 GLV 249


>gi|90021218|ref|YP_527045.1| XRE family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89950818|gb|ABD80833.1| transcriptional regulator, XRE family [Saccharophagus degradans
           2-40]
          Length = 227

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 8/131 (6%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA--------YQANMFKS 175
           A     + + T     +   + L+   G  I ++ +  + +           + A+    
Sbjct: 95  AAGARGFITKTSPSDVMISAIKLVLSGGVYIPQEMISALNMPFTAHSSDGITHAASPAPQ 154

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                  D +LT R++  L  + +G ++ EIA  L +S +TV  ++A+I+R+   K R+ 
Sbjct: 155 TAPPATGDHQLTERQLHVLHEMLKGLSNKEIARELNMSPSTVKVHVAAILREFNVKNRTQ 214

Query: 236 AIAYAVRNNIV 246
           A+A+A + NI+
Sbjct: 215 AVAHARQKNII 225


>gi|300864647|ref|ZP_07109505.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300337396|emb|CBN54653.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 91

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE++ +  ++ G T+ EIA  L IS+ TV+N++++I+ KTAT  R   + +A++ 
Sbjct: 10  VTLSDRELQVVELVAAGLTNQEIADKLDISKRTVDNHMSNILTKTATGNRVALVRWAMQW 69

Query: 244 N 244
            
Sbjct: 70  G 70


>gi|254519013|ref|ZP_05131069.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912762|gb|EEH97963.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 214

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 43/77 (55%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           +N   S +    K ++ + +E++ + +I+EG T+ EI+  L +S  T+ N I +I+ K  
Sbjct: 137 SNNNHSLNDKEIKRYDFSDKELQIIKYIAEGLTNKEISEKLYLSEGTIKNNITNILAKLN 196

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R+    +A +N IV
Sbjct: 197 LRDRTQIAIFAFKNRIV 213


>gi|254501452|ref|ZP_05113603.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222437523|gb|EEE44202.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 236

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 82/234 (35%), Gaps = 23/234 (9%)

Query: 36  MIPLDCTVSWTMRMYALTE----------------YVGASHFLLVRWDLFQEQKLDSIVS 79
           M  +        ++ A++E                 +GA+H L+    +      + +  
Sbjct: 1   MCTMLDQTELKNKLRAISEANAAHHVLDILESNLRRMGATHILITGLPMPNRPIDNLVQR 60

Query: 80  SDWP---FDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             WP    D +   +LS  D      L         +     E+    A        +  
Sbjct: 61  FRWPDQRNDGIESTSLSANDSALMLGLGSNRARIWTITAGDMEHSDLMASAGEGSQIVVV 120

Query: 136 DVARIRIGLMLLFPKGRII--LRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVE 192
            V  +      +F  G  +   +  L  +  L+A   +  +   V  G +   L+ RE +
Sbjct: 121 PVTELYPFQAFVFASGPALQVSKYDLSNLEALSAAAISRLRELGVVSGQRPGALSTRERK 180

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L   + GKT+ EIA +L IS+ TV+ ++ +   K     ++  +  A+R   +
Sbjct: 181 VLELTAYGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 234


>gi|323499247|ref|ZP_08104224.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315635|gb|EGA68669.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 222

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201
           + LL      I+ D +W    +A      F+  +          LT RE E +  +  G 
Sbjct: 114 ISLLLKGMEKIMNDEMWLSRKVAQDYIEYFRCANTVTTSQAYANLTKREKEIMRLLGHGA 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A
Sbjct: 174 SNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|256396212|ref|YP_003117776.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362438|gb|ACU75935.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 241

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 12/181 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNR 129
            + ++  P   V  + + E D       + +        +  T  ++    A +    + 
Sbjct: 59  RLAAAHTPDVAVMDIRMPEMDGIEATRRITESSDTTRVVMLTTFDDDEYVYAALRAGASG 118

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL--- 186
           +      +  I   + +      II      +  L+A +              D  L   
Sbjct: 119 FLVKDMALDSILDAVRVTASGDAIIAPSVTRK--LIAEFAIRPDPGATAPRRGDKALLDG 176

Query: 187 -TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E LT +  G ++ EIA  L IS  T   ++A +  K   + R   +  A    +
Sbjct: 177 VTDREREVLTLVGRGLSNGEIAEELFISAATAKAHVARLFTKLGARDRVQLVITAYEAGL 236

Query: 246 V 246
           V
Sbjct: 237 V 237


>gi|220910558|ref|YP_002485869.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219867169|gb|ACL47508.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 79/201 (39%), Gaps = 22/201 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110
           +Y+    + +V     +E     I+    P  ++  + + E D Y    +V   P   + 
Sbjct: 29  DYLELQGYQVVTASHGREAL--RILEQGIPNMIICDVMMPEMDGYTFVKSVRDNPRTQWI 86

Query: 111 PVFHTLPEN------ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           PV     +       I    G D  Y    F+   +   +     +   +++ +   I  
Sbjct: 87  PVLFLSAKGQIQDRVIGLNTGADV-YMVKPFEPDELIAQIEASLKQAERMIQHQPEAITS 145

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             + Q  +          D  LT  E++ +  +++G  + +IA  L +S+ TV ++++++
Sbjct: 146 NLSAQVPL----------DVTLTATELKVVQLVAKGMANQKIAEELHVSQRTVESHVSNM 195

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           + KT  K R+    +A+   +
Sbjct: 196 LGKTGLKNRTELARWAIERRL 216


>gi|120555604|ref|YP_959955.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
 gi|120325453|gb|ABM19768.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
          Length = 891

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISR 214
           R  + G   A    +F    V    D     ++ RE   L  I++G ++ EIA  L IS 
Sbjct: 800 RHLDNGDFTAALGRLFGCEPVAPAADPLAEPISDREQGVLELIAQGLSNQEIADKLHISL 859

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  +   I  K   K+R+ AI  A    ++
Sbjct: 860 HTVKTHARRINAKLDVKSRTQAIVRARELGLL 891


>gi|291448479|ref|ZP_06587869.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291351426|gb|EFE78330.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 168

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT R+ E L  +++G ++  I   L I+  TV  ++  +  K     R+ A+  A+
Sbjct: 94  KPLPLTRRQKEVLNLLAQGLSNRRIGRALHITEQTVKAHLHMVYHKLGVADRTEAVVIAL 153

Query: 242 RNNIV 246
           R  +V
Sbjct: 154 RQGLV 158


>gi|162452375|ref|YP_001614742.1| LuxR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161162957|emb|CAN94262.1| transcriptional regulator, LuxR family [Sorangium cellulosum 'So ce
           56']
          Length = 270

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +  GKT+ EIAV+L IS+ TV ++IA    K    +R+GA  +     +
Sbjct: 209 LTARELEVLRLVGVGKTNREIAVVLHISQKTVQHHIAHAYDKLGIYSRAGATLWLGERGL 268

Query: 246 V 246
           +
Sbjct: 269 L 269


>gi|159028166|emb|CAO89773.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 83/208 (39%), Gaps = 29/208 (13%)

Query: 54  EYVGASHFLLVRWDLFQE------QKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQR 104
           +Y+    + +   +   E      +  ++  + + P  ++  + + E D Y     + + 
Sbjct: 26  DYLEFRGYRVTTAENGTEALAILERGANAAKAREMPDMIICDLMMPEMDGYAFLETIRRD 85

Query: 105 PTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
                 PV    P+      +T      + Y    F+   +             ++   L
Sbjct: 86  IRFSGLPVIFLSPKGQSQDKVTGLTAGADFYMVKPFEPEELV-----------ALVESSL 134

Query: 160 WEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            + G L   ++    S DV   +   + ELT  E++ +  +++G  + EIA  L +S+ T
Sbjct: 135 KQAGQL-PKRSTRIHSPDVTSLQVPGNVELTPTELKVVQLVAQGLANREIAAKLNVSQRT 193

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + +++++++ KT    R+    +A+ +N
Sbjct: 194 IESHVSNMLHKTGLHNRTELSQWAIESN 221


>gi|326440343|ref|ZP_08215077.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 87  VRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRI 142
           VR   L+       ++  P       V  T   +      +      +         +  
Sbjct: 64  VRMPELNGIRATERIVAGPGRPPKVLVVTTFENDAYVYDALRAGAAGFLLKRVAADELIQ 123

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + L+     ++    +     LAA       +    W +  +LT RE + L  ++ G T
Sbjct: 124 AVRLMARSDSLLFPAAVRS---LAAEHGARRTAPVPPWAR--KLTEREADTLRLMAAGLT 178

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  +G+   TV +++A+++ KT  + R+ A+  A  +  +
Sbjct: 179 NGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFI 222


>gi|284046422|ref|YP_003396762.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950643|gb|ADB53387.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 218

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  I+ G T+ EIA  L +S  TV ++ A I RK     RS  + YA+   
Sbjct: 151 ELTARELEVLRLIARGLTNREIAERLFLSVRTVESHRARIQRKLGRSRRSDLVDYALERG 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|256819682|ref|YP_003140961.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
 gi|256581265|gb|ACU92400.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
          Length = 234

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DF LT RE E LT  S+G +S EIA  L IS  TVN +  +I  K   ++   AI  A R
Sbjct: 171 DFVLTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDLARR 230

Query: 243 NNIV 246
             I+
Sbjct: 231 KGIL 234


>gi|196228675|ref|ZP_03127541.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226956|gb|EDY21460.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 217

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 8/176 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLPENITPPAGMDNRY 130
            +V    P  +V  + + E +      Q       TE+         E I        R 
Sbjct: 43  EMVEKLQPQIVVMDVTMPELNGLEATRQIKKIAPATEILMFTGLETEELIRQVFEAGARS 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L  D        +      +     ++ EI L A +     K  D     D  LT RE
Sbjct: 103 YILKTDGREQLEAALTALAAHKPYFTTQVGEI-LFAKFLHG--KPKDEEQTVDGRLTDRE 159

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E +  ++EG ++ E+A  LGIS  TV  + A+IM+K   K+ S  + YA+RN+I+
Sbjct: 160 REIVQLLAEGASNKEVADSLGISVKTVETHRAAIMKKLKFKSFSDLVRYAIRNHII 215


>gi|148273853|ref|YP_001223414.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831783|emb|CAN02752.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 222

 Score = 88.5 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 10/116 (8%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y S       +   L  +     +            A  +A    S D   GK   +T 
Sbjct: 102 GYLSKALPARELVEALERIHSGEELFNE---------APIRAASAPSLDW-PGKREGITD 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E L  I++GK++ E+A +  +S NTV +YI SI RK   ++R+ A+ + V + 
Sbjct: 152 RESEILALITQGKSNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWGVGHG 207


>gi|300715701|ref|YP_003740504.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661]
 gi|299061537|emb|CAX58651.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661]
          Length = 247

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 37/86 (43%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              L   YQ    K+           T RE E + W S GK+  EIA+ILGI   TV  +
Sbjct: 154 HEKLTQLYQEQSRKADFEEMNTRELFTSRENEIIYWASVGKSYQEIALILGIKLTTVKYH 213

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           I + ++K        AI   +  N++
Sbjct: 214 IGNAVKKLGVTNAKHAIRLGIELNLI 239


>gi|118470646|ref|YP_887553.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171933|gb|ABK72829.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 219

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L ++++G T+ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 158 LTERETEILRYVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217


>gi|317131807|ref|YP_004091121.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469786|gb|ADU26390.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
          Length = 225

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 77/197 (39%), Gaps = 6/197 (3%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPV 112
           +GA+  + V       + +   V  D P  ++  + + E D       + ++  ++   V
Sbjct: 21  LGANADMEVTGTAADGRDVLRSVRKDQPDVILMDIRMPEVDGVQCTKIIKEQYPQIKIIV 80

Query: 113 FHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
             T  E+    + +    + Y      +  +   +  +     II  +   ++  + +  
Sbjct: 81  LTTFDEDDYIFSALKYGASGYLLKGVSMEELSGAIRKVSAGQAIINAEVATKVVHMFSKM 140

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A    +          L+  E + +  +  G ++ EIA  L +S  TV NY+++I+ K  
Sbjct: 141 AQSSLTSPTAGKTLELLSRTEKQVVREVGRGLSNKEIARKLNLSEGTVRNYLSTILSKLE 200

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R+    +A ++ I+
Sbjct: 201 LRDRTQLAIWATQSGIL 217


>gi|282863714|ref|ZP_06272772.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561415|gb|EFB66959.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 222

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 2/123 (1%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++  G+ ++     ++         L+  +             + 
Sbjct: 99  RAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRR--LITEFSKIATAPRPPAMARI 156

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A   
Sbjct: 157 GDLTERETEVLVLIAQGLSNQEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 216

Query: 244 NIV 246
            +V
Sbjct: 217 RLV 219


>gi|302532669|ref|ZP_07285011.1| two component system response regulator [Streptomyces sp. C]
 gi|302441564|gb|EFL13380.1| two component system response regulator [Streptomyces sp. C]
          Length = 191

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    L+  +A +        L     +    F              + +     
Sbjct: 19  DVVLMDIRMPLLDGLAATRAISADQDLADVRVVMLTTFELDEYVFEAIRAGASGFLVKDT 78

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+A + A   +       +   LT RE E + 
Sbjct: 79  EPEELLRAVRAVVEGDALLSPGVTRR--LIAEFAARSRRPAPAEGLER--LTDREREVMA 134

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A    +V
Sbjct: 135 LVGTGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYETGLV 185


>gi|327189685|gb|EGE56833.1| autoinducer transcriptional regulator protein [Rhizobium etli
           CNPAF512]
          Length = 277

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I
Sbjct: 215 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 274

Query: 246 V 246
           +
Sbjct: 275 I 275


>gi|307296697|ref|ZP_07576516.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877826|gb|EFN09051.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 225

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 17/214 (7%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           M  +T+ +G  H+ LV   +  +  + S+   D+P D V             + +     
Sbjct: 5   MAEITKAMGFRHYALVHH-VDLKPAVRSVHIVDYPQDWVERFQARRLYASDPIHRASHRT 63

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVA-------------RIRIGLMLLFPKGRIIL 155
                 +  ++I      D    +  ++                +          G ++ 
Sbjct: 64  NVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIPGELNGSCSFAMAAGEMLD 123

Query: 156 RDRLWEIGLLAAYQ---ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
             +L  + L+ ++    A           +   LT R+ EC+  ++ GKT  EI+ ILGI
Sbjct: 124 HRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTERQAECVALVARGKTDWEISQILGI 183

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + TV  ++     +     R+     A+    +
Sbjct: 184 GQETVIQHVKDARDRYGVTKRTLLAIRALFEGQI 217


>gi|294499414|ref|YP_003563114.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349351|gb|ADE69680.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 212

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 5/150 (3%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           M   E  K  + L +   L    F      I         Y     +  RIR  +  +F 
Sbjct: 61  MDGVEATKLISELTKAKPLILTTFDDDEYIIDAVKNGAKGYLLKNTEPERIRDAIKSVFN 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              ++    L +I              D+      + T RE   +T I++G ++ EI+  
Sbjct: 121 GHTVLQDVVLDKIKSSLNAATERESKADM-----TQFTERETSIMTLIAKGLSNKEISKT 175

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L IS  TV NYI+SI+ KT  + R+    Y
Sbjct: 176 LFISEGTVANYISSILSKTGLEHRTQIAIY 205


>gi|315504459|ref|YP_004083346.1| transcriptional regulator, luxr family [Micromonospora sp. L5]
 gi|315411078|gb|ADU09195.1| transcriptional regulator, LuxR family [Micromonospora sp. L5]
          Length = 978

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA  A               LT RE E L  ++EG ++  IA  L IS  T + +++ I+
Sbjct: 885 AATLARRVGLRGTGRPGPDLLTSREQEVLRLVAEGHSNSRIAERLFISPKTASVHVSRII 944

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R  A A A R  ++
Sbjct: 945 AKLDVTNRVEAAALAHRLGLL 965


>gi|282896939|ref|ZP_06304945.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198348|gb|EFA73238.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 210

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 78/199 (39%), Gaps = 22/199 (11%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107
           +Y+G   + ++  +  Q  +   I+  D P  ++  + + E D Y   +++  +      
Sbjct: 22  DYLGFRGYDVLTAENGQ--RALGILEQDIPDMIICDVMMPEMDGY-TFVEQVRQNERTSW 78

Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              LF        + +       + Y    F+   +   +         + +   W+   
Sbjct: 79  VPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTSRWKEH- 131

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                        V +  D +LT  E++ + +++ G  + EIA  L +S+ TV ++++++
Sbjct: 132 -QTKVGEPGSRIQVPF--DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 188

Query: 225 MRKTATKTRSGAIAYAVRN 243
           + KT    R+    +A+ N
Sbjct: 189 LGKTNLHNRTELARWAIEN 207


>gi|330470082|ref|YP_004407825.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328813053|gb|AEB47225.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 225

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE++ L  ++EG+++ EI   L +S +TV  +   + RK   + R+ A+A   R 
Sbjct: 162 IGLTERELQVLLGMAEGRSNAEIGRELFVSEDTVKTHARRLFRKLGARDRAHAVAAGFRA 221

Query: 244 NIV 246
            +V
Sbjct: 222 GLV 224


>gi|300088572|ref|YP_003759094.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528305|gb|ADJ26773.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 220

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 46/104 (44%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            +G +     G   +  ++    L    Q++              LT RE+E LT I+ G
Sbjct: 114 MVGAIRAVASGDTSVTPQIDRSLLEQIQQSDQQFQNIAEMESAEPLTAREIEILTLIAAG 173

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           K + EIA  L I   TV N+I  I  K   K+R  AI+Y +R N
Sbjct: 174 KGNREIAETLFIEEKTVKNHINVIYSKLRIKSRYEAISYMLRQN 217


>gi|284045613|ref|YP_003395953.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949834|gb|ADB52578.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 208

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT I+ G T+ EIA  L +S +TV  + +++ RK   + R+ A+  A R  +
Sbjct: 147 LSEREQEVLTLIAGGSTNREIAEELYLSPHTVKEHTSALYRKLKARNRAEAVQRAQRIGL 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|260597411|ref|YP_003209982.1| DNA-binding transcriptional regulator CsgD [Cronobacter turicensis
           z3032]
 gi|260216588|emb|CBA29849.1| Probable csgAB operon transcriptional regulatory protein
           [Cronobacter turicensis z3032]
          Length = 215

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+ +A  +
Sbjct: 155 LTHREKEILNKLRFGASNMEIARSLFISENTVKTHLYNLFKKLAVKNRTQAVTWANHH 212


>gi|239833383|ref|ZP_04681711.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239821446|gb|EEQ93015.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 233

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 160 WEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             + L+A  +A   +       G+   L+ RE E L  I  G+ + EIA  LG+S +TV+
Sbjct: 143 ARLNLVARVKAISNQPAAAEPNGEFIHLSRRETEVLKEIGTGQRNGEIARKLGLSEHTVS 202

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +Y+ +I +K +  +R+ A   A+R  +V
Sbjct: 203 DYVKAIYQKLSVSSRAEATREAIRRGLV 230


>gi|218660891|ref|ZP_03516821.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 65

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E +  ++ GKT+ EI  ILGIS  TVN +I++   K      +  +A A+RN I+
Sbjct: 5   TPREREIIGCMAAGKTAAEIGAILGISPITVNTHISNAKAKLGVFKETALVAAALRNGII 64


>gi|254382064|ref|ZP_04997426.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340971|gb|EDX21937.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 222

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170
           V+  L    +     D R   L   V  +  G  LL P   R ++ +        A   A
Sbjct: 90  VYEALHAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRLIEEYTAATARPAGGPA 149

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +  +V       LT RE E L  +  G+++ EIA  L +S +TV +++ +++ K   
Sbjct: 150 LSAERLEV-------LTARERETLLHLGRGRSNAEIAAELTVSEHTVKSHVGNVLAKLGL 202

Query: 231 KTRSGAIAYAVRNNIV 246
           + R  A+  A    ++
Sbjct: 203 RDRIQAVICAYETGLI 218


>gi|317499014|ref|ZP_07957295.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893664|gb|EFV15865.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 222

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 68/173 (39%), Gaps = 6/173 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V  D P  ++  + + E D       + ++  ++   +  T  ++      +    + Y 
Sbjct: 43  VRKDKPDVILMDVRMPEMDGVQCTQIIKEQYPDVKIIILTTFDDDEYVYNALKHGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                +  +   +  +   G +I  +   ++    +  A       +H     E+T  E 
Sbjct: 103 LKGISMDELEKAIKTVHSGGAMINPEVATKVVDFFSEMAQSNYDTSIHAQNVEEITEAEW 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E +  +  G ++ EI+  L +S  TV NY+++I+ K   + R+    + V++ 
Sbjct: 163 EIIKLVGRGLSNKEISAELSLSEGTVRNYLSTILNKLDLRDRTQLAIWEVQSG 215


>gi|300790735|ref|YP_003771026.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800249|gb|ADJ50624.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 221

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 3/123 (2%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +   +     +   + +      +I          L A  A + +       + 
Sbjct: 96  RAGASGFLLKSLAPEELVAAMRVAARGDALIDPSVTRR---LVAKFATVLEPAAAEPPEL 152

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  ++   ++ EIA  L +   TV  +++ ++ K     R  A+ YA R+
Sbjct: 153 ARLTSREREVLLLLAGACSNAEIARKLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRH 212

Query: 244 NIV 246
            +V
Sbjct: 213 KLV 215


>gi|297161212|gb|ADI10924.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 3/195 (1%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           E VG +       ++ +++  D +V  D        +A +        L+    +    F
Sbjct: 29  EVVGEASDGAEAVEIARDRGAD-VVLMDIRMPGTDGLAATRMITQDPRLEDVRVVMLTTF 87

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQAN 171
                 +       + +     +   +   + +      ++       +    LA     
Sbjct: 88  EVDEYVVESLRAGASGFLGKGAEPDELLAAIRIAAAGEALLSPVATKGLIAKFLAQGGGR 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +S      +   LTGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   +
Sbjct: 148 DGESGAYDAARLDALTGREREVLVQVAGGLSNDEIAARLEVSPLTVKTHVNRAMAKLGAR 207

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  +    +V
Sbjct: 208 DRAQLVVISYETGLV 222


>gi|326330564|ref|ZP_08196871.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325951639|gb|EGD43672.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 205

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 13/142 (9%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F    E +         Y     D   I  G+        ++  D       
Sbjct: 77  PAVLILTTFDRDAEVLGAIEAGAAGYLLKDVDPEVIVEGIRRAAAGDVVLAPD------- 129

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LAA      +S          LT RE+E L  ++ G T+ EIA  L ++  TV +++A I
Sbjct: 130 LAARVLKGMRSPLPR------LTDREIEVLRHLARGATNREIARTLFVTEATVKSHLAHI 183

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K    +RS AI  A    ++
Sbjct: 184 FTKLDVDSRSRAIHVAQETGLI 205


>gi|163747813|ref|ZP_02155152.1| putative GerE family transcriptional regulator [Oceanibulbus
           indolifex HEL-45]
 gi|161378921|gb|EDQ03351.1| putative GerE family transcriptional regulator [Oceanibulbus
           indolifex HEL-45]
          Length = 186

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ELT RE++ LT ++EGK +  IA  LG+S +TV  +I  ++ K     R+ A  +
Sbjct: 120 ELTNREMQVLTCVAEGKQNKVIANSLGLSEHTVKLHIHHVISKLGVNNRTEAAVW 174


>gi|159898692|ref|YP_001544939.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891731|gb|ABX04811.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 218

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 15/135 (11%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +          D  +  L   +     G   + P              + A   + +
Sbjct: 91  FEAIRAGAAGYLLKDMAHSDLVSAIRGTVSGKAYVDP-------------NVTARLLSQV 137

Query: 173 FKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             S +          LT RE+  L  I+ G T+  IA  L +S  TV N++++I+ K   
Sbjct: 138 ATSRNQPPASQLTGRLTERELAVLNLIATGHTNASIAEQLRLSEGTVRNHVSTILSKLDV 197

Query: 231 KTRSGAIAYAVRNNI 245
             R+ A   AV + +
Sbjct: 198 ADRTQAALLAVEHGL 212


>gi|52424333|ref|YP_087470.1| CitB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306385|gb|AAU36885.1| CitB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 226

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 12/131 (9%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-----LWEIGLLAAYQ----- 169
           +    G+D R   LT   ++  I  ++       +L+D      L +I  +A  +     
Sbjct: 88  VLRQEGVDARIVILTVSDSKADIYALIDAGADGYLLKDTEPDTLLAQIKQIAQGEIILSD 147

Query: 170 --ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              N+             LT RE++ L  I+ G ++ +IA  L IS  TV  +I +++RK
Sbjct: 148 SIKNLLVERHPAHEPIHALTDREMDVLQLIATGLSNKQIAAQLFISEETVKVHIRNLLRK 207

Query: 228 TATKTRSGAIA 238
               +R  A  
Sbjct: 208 LNVHSRVAATV 218


>gi|54027465|ref|YP_121707.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018973|dbj|BAD60343.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 222

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +           L   V     G  +  P    +         +L  Y+  
Sbjct: 97  VLEAIKAGASGYLVKSASAAELIEAVRATAAGQPVFTPGLAGL---------VLGEYRRM 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L  +++G ++ +IA  LG+S  TV N++ + +RK    
Sbjct: 148 ASAPARPDEPHRPALTERETEVLRMVAKGLSAKQIAARLGLSHRTVENHVQATLRKLQLA 207

Query: 232 TRSGAIAYAVRNNI 245
            R     YA+   +
Sbjct: 208 NRVELTRYAIEQGL 221


>gi|288921284|ref|ZP_06415567.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288347315|gb|EFC81609.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 217

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 46/88 (52%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L+   + A  + ++ ++     G    +T RE E L  ++EG +S +IA IL IS  TV 
Sbjct: 128 LYPGAVNALIRDHLERAAAGDPGTGRVITDREEEVLKLVAEGHSSRQIADILFISVKTVE 187

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +++++K   + R     YA+R  ++
Sbjct: 188 RHRSNLLQKLGLRDRLELTRYAIRAGLI 215


>gi|172039633|ref|YP_001806134.1| LuxR family transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171701087|gb|ACB54068.1| transcriptional Regulator, LuxR family [Cyanothece sp. ATCC 51142]
          Length = 90

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +     L+GRE++ L  +S G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   +
Sbjct: 4   AKFQNPVSLSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELV 63

Query: 238 AYAVRNN 244
            +A++  
Sbjct: 64  RWALQWG 70


>gi|260906661|ref|ZP_05914983.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 216

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIG 143
           V+   +   +    +++R       +  T   +       A   + +   T +  ++   
Sbjct: 55  VQMPVMDGLESTAEIVRRGAAGAVLILTTFDRDDFLFQALAAGASGFLLKTAEAEQLIDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKT 202
           +  L     ++  +    +      ++            + EL TGRE+E L  ++ G +
Sbjct: 115 VTALAGGDGLLSPEVTRRV----IERSVRSPESTTPAAPELELLTGRELEVLHLVAGGLS 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +   TV  ++++++ K   + R   + +A +N +V
Sbjct: 171 NSEIAGRLFVGEATVKTHVSNLLTKLDIRDRIHVVIFAYQNGVV 214


>gi|309812489|ref|ZP_07706242.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
 gi|308433544|gb|EFP57423.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
          Length = 253

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 140 IRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           +R  L    P G ++   +R+    ++ + +           G++  LT RE E L  I+
Sbjct: 131 VRGYLSKTLPAGELVSALERVHAGEVIVSAEVGSGPIAGEWPGREEGLTPREAEVLALIT 190

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +G ++++IA    +S N+V +YI +  RK    +RS A+ + VR+ 
Sbjct: 191 QGLSNNDIAAQTHLSINSVKSYIRTGYRKIGVTSRSQAVLWGVRHG 236


>gi|299132715|ref|ZP_07025910.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
 gi|298592852|gb|EFI53052.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
          Length = 241

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHW 180
           P         ++TF     R        + R +L+       L+A Y  A+  +   ++ 
Sbjct: 120 PIHDSRGPVAAVTFAADERRPTFQRCIEQNRSVLQ-------LMAMYFHAHARRRLSINR 172

Query: 181 GKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             D   L+ RE ECL W ++GK++ EI  +L ISR T   ++ +   K   +T   A+A 
Sbjct: 173 VIDGVALSPREFECLEWAAQGKSAWEIGRLLNISRRTAAFHLDNAKMKFGVRTICQAVAK 232


>gi|311109177|ref|YP_003982030.1| response regulator 18 [Achromobacter xylosoxidans A8]
 gi|310763866|gb|ADP19315.1| response regulator 18 [Achromobacter xylosoxidans A8]
          Length = 236

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQ 169
           +   L    T     +     ++  +  +  G   + P    RII   R    G   A  
Sbjct: 103 ILAALRAGATGYVLKERDDLEVSLSIRSVLRGGAPIDPFVARRIIEELRPRRTGPSDAAA 162

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +  +S D        L+ RE + L  +SEG  + EIA  L +SR TV  ++  I RK A
Sbjct: 163 GDPAESADSGET----LSPRESQILRLVSEGLGNREIAEELHLSRYTVECHVKHIYRKLA 218

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R+ AI  A    ++
Sbjct: 219 VSSRTRAIHAARTRGLL 235


>gi|188585327|ref|YP_001916872.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350014|gb|ACB84284.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 213

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 38/87 (43%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           +++ +          M             LT RE++ L  +++GKT+ EI   L +S  T
Sbjct: 122 EQIMDAKTTEKVLEYMRNKNPNRENPTDILTNREMDILDLVAKGKTNSEIGEELHLSEKT 181

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243
           V N ++ I+ K     R+ A AY V  
Sbjct: 182 VRNQLSRILNKLDLNNRTQAAAYYVSQ 208


>gi|56459293|ref|YP_154574.1| transcriptional regulator NarL [Idiomarina loihiensis L2TR]
 gi|56178303|gb|AAV81025.1| Nitrate/nitrite response regulator (CheY, HTH domain) [Idiomarina
           loihiensis L2TR]
          Length = 219

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 13/130 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +          D     L   + R   G M+L      IL   L +       Q +
Sbjct: 94  VVAAITNGADGYLLKDMEPELLLEQIHRAVTGKMVLSEAITEILATALRQPTQSTTSQLS 153

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E L+ I++G ++  IA  L IS  TV  ++  +++K   +
Sbjct: 154 -------------NLTNREHEILSLIAKGMSNKVIARELDISDGTVKVHVKHLLKKLGLR 200

Query: 232 TRSGAIAYAV 241
           +R  A  + V
Sbjct: 201 SRVEAAVWMV 210


>gi|297539450|ref|YP_003675219.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297258797|gb|ADI30642.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 275

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE E + W+  GKT+ EI +IL IS  TV  ++  I +K     R+ A   
Sbjct: 215 LSDRESEIMLWVKMGKTNHEIGMILNISAFTVKKHLQRIFKKLDVLNRAQAATK 268


>gi|194292820|ref|YP_002008727.1| response regulator in two-component regulatory system with narx,
           regulates anaerobic respiration and fermentation
           (luxr/uhpa familiy) [Cupriavidus taiwanensis LMG 19424]
 gi|193226724|emb|CAQ72675.1| response regulator in two-component regulatory system with NarX,
           regulates anaerobic respiration and fermentation
           (LuxR/UhpA familiy) [Cupriavidus taiwanensis LMG 19424]
          Length = 217

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 63/162 (38%), Gaps = 6/162 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVF---HTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +    LS  +    +++   +    V        E      G    Y     +   +  G
Sbjct: 56  LNMPGLSGLEALQLLVEDLPQTAVIVLTVSEEAEELAAALRGGARGYLIKNIETEALIAG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I         L+A ++A +  +  +       LT RE E +  ++ G+++
Sbjct: 116 IRRAAAGEPVISDS--MTAKLVAQFRAPV-PAVALRQDDAPRLTAREREIVQGLARGESN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  LG++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 173 KEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214


>gi|148553102|ref|YP_001260684.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498292|gb|ABQ66546.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1]
          Length = 254

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 79/228 (34%), Gaps = 22/228 (9%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
             + +   +  +    +  G   F LV      + +   ++ +++P   V  +  +   +
Sbjct: 24  AAESSAQLSEVIAGAIQQFGFRWFALVDDGDLYKHRSGCMMLTNYPSSWVDEVISARLYR 83

Query: 98  YYNV-LQRPTELFCPVFHTLPENITP------------PAGMDNRY-CSLTFDVARIRIG 143
              V            +  +P+ I P              G+   Y         R    
Sbjct: 84  DDPVHAASIRSPTGLCWDRIPDVIAPTRAQLSVLERGRAHGLTTGYTVPFRIPGERGAFF 143

Query: 144 LM-----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +       F     I    L  I   A       ++   H      LT R+++CL  I+
Sbjct: 144 SIARPKDRSFTYSEAISAQLLGGIAFEAGRALVKGRAVKAHGA---PLTPRQIDCLRLIA 200

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  E+  ILG+S +T++ Y+ +  R+   KTRS  +  A R+  V
Sbjct: 201 AGKTEWEMGKILGLSPSTIHEYVEAARRRYGVKTRSQLVLAAARDGYV 248


>gi|21244146|ref|NP_643728.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109777|gb|AAM38264.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 923

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D     D   + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R 
Sbjct: 839 SGDDDPAGDI-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRE 897

Query: 235 GAIAYAVRNNIV 246
           GA+A A++  ++
Sbjct: 898 GALAQALQRGLL 909


>gi|124266085|ref|YP_001020089.1| ATP-dependent transcriptional regulator-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258860|gb|ABM93854.1| ATP-dependent transcriptional regulator-like protein protein
           [Methylibium petroleiphilum PM1]
          Length = 896

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 14/241 (5%)

Query: 11  VLNREDEQRTSFVSHL-----PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           VL  E ++ T+    +     P     +     ++      +R+         +  L+ R
Sbjct: 664 VLAGELDRATALAKRIAPVCPPLNPQWIYMADDMEGEAFGRIRLAIAHHDHALASQLIAR 723

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q  ++   +   + F+ +        +  +  L++  +L  P              
Sbjct: 724 ERARQTGRVYRDI-RLYVFEALMLHDKGSPNGAHRSLRKALQLARP-------GRYVRCF 775

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           +D     ++      +  L            DR +   LLAA   ++ +    H   D  
Sbjct: 776 LDEGRAIVSMLREEYQHFLQSAADGQAPADPDRDFIELLLAASGTDLGQPRGRHHLTD-P 834

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L +++ G  + EIA  L +S NTV  ++ +I  K     R  AI  A    +
Sbjct: 835 LSEREKEMLQFLANGVANKEIASRLFVSENTVKFHLKNIYSKLGVSGRVQAINAARTLRL 894

Query: 246 V 246
           V
Sbjct: 895 V 895


>gi|327189418|gb|EGE56584.1| LuxR family transcriptional regulator [Rhizobium etli CNPAF512]
          Length = 65

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E + W++ GKT+ EI  IL IS  TVN +IA+   K      +  +A A+RN I+
Sbjct: 5   TPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKLGVFKETALVAEALRNGII 64


>gi|239978487|ref|ZP_04701011.1| two component system response regulator [Streptomyces albus J1074]
 gi|291450385|ref|ZP_06589775.1| two component system response regulator [Streptomyces albus J1074]
 gi|291353334|gb|EFE80236.1| two component system response regulator [Streptomyces albus J1074]
          Length = 222

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 6/172 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +  + +      L+    +    F                +     
Sbjct: 49  DVVLMDIRMPGTDGLEAARRITADPRLETVRVVILTTFDLDEYVYRALREGVTGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-FKSYDVHWGKDFELTGREVECL 194
           +   +   + +      +I         L+A +   +     D        LT RE E L
Sbjct: 109 EPEELAHAIRVAARGDALISPSVTRR--LIAEFAGRVAPPPPDPRLNA---LTDREREVL 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G T+D IA  L +S  T   +++ +M K   + RS  +  A  + +V
Sbjct: 164 RLVAGGLTNDRIAATLVVSPATAKTHVSRVMTKLGVRDRSQLVVLAYESGLV 215


>gi|256395654|ref|YP_003117218.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361880|gb|ACU75377.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 14/183 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPV---FHTLPENITPPAGMDNR 129
            + ++  P  ++  + +   D       ++ R       V   F              + 
Sbjct: 43  ELAAALQPAIVLMDVRMPRLDGIAATRQIIARALPTRVIVLTTFDLDDYAFEALRAGASG 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185
           +         +   +  +     +I         LL AY        D   G        
Sbjct: 103 FLLKNSRPDDLAAAIRAVAAGDAVIAPSTTRR--LLDAYADRFTAPSDPPAGASDPSAPL 160

Query: 186 --LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E    +  G T+ EIA  L +S  TV  ++  I+ K A + R  A+ YA   
Sbjct: 161 ESLTRREREVFDQMVSGLTNKEIAQQLALSETTVKTHVVRILAKLAVRDRVQAVIYAYET 220

Query: 244 NIV 246
             +
Sbjct: 221 GYI 223


>gi|295836038|ref|ZP_06822971.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197695120|gb|EDY42053.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 223

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 10/170 (5%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL---TFD 136
           P  +V  + +   D       + +R       V  T  E+      +    C        
Sbjct: 49  PHVMVMDIRMPGMDGIEATRRITERGDGPKVLVLTTFDEDDHVYGALRAGACGFLVKDMA 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +  I   + ++     +I       +    A++A       V  G    LT RE E L  
Sbjct: 109 LDAILDAVRVVAAGDALIAPTVTRRLISEFAHRAEAEPPTPVPTG----LTNREREVLVL 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +G ++ E+A  + IS  T   Y++ ++ K   + R   +  A    +V
Sbjct: 165 VGQGLSNTELAHHMHISTATAKTYVSRLLTKLGARDRVQLVITAYEMKLV 214


>gi|307152943|ref|YP_003888327.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306983171|gb|ADN15052.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 212

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 70/198 (35%), Gaps = 21/198 (10%)

Query: 54  EYVGASHFLLV-------RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
           +Y+    + ++         D+ ++Q++  ++  D     +   A  EK +         
Sbjct: 27  DYLEFRGYEVITAENGREALDILEQQQIPDMIICDVMMPEMDGYAFVEKLRDDARTSWIP 86

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
            LF        + I       + Y    F+   +   +     +                
Sbjct: 87  FLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLSRVVPPS----------- 135

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
               +      +      ELT  E++ +  +++G  + +IA  L +S+ T+ +++++++ 
Sbjct: 136 ---LSTTSGPTIQVPSHVELTPTELKVIQLVAQGMANRDIADKLNVSQRTIESHVSNMLN 192

Query: 227 KTATKTRSGAIAYAVRNN 244
           KT    R+    +A+ + 
Sbjct: 193 KTNLHNRTELARWAIESK 210


>gi|251795413|ref|YP_003010144.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247543039|gb|ACT00058.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 235

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  +  G+++ EIAV  G+S +TV N++ +I++K     R     YA    
Sbjct: 172 PLTAREKDILERVVTGESNKEIAVAFGLSEHTVKNHLKNILQKLHLDNRVQLTRYAYEQG 231

Query: 245 IV 246
           ++
Sbjct: 232 ML 233


>gi|297579999|ref|ZP_06941926.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535645|gb|EFH74479.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|327485927|gb|AEA80333.1| Transcriptional regulator VpsT [Vibrio cholerae LMA3894-4]
          Length = 224

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           IL+D +W    LA      +++ +         +LT RE + +  +  G ++ EIA  L 
Sbjct: 125 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217


>gi|325263734|ref|ZP_08130467.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
 gi|324030772|gb|EGB92054.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
          Length = 240

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 11/157 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  L   +A +E   YY ++ +P        H   E++           +    +    I
Sbjct: 91  PLGLPLDIADTETVNYYIIITQPR-------HQNTEDLFTSFDAIESISADPGTMDFHEI 143

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
             +++     I       E+    A   +      ++     ELT RE E +  +S G +
Sbjct: 144 ANLIVSSFDIIFSLMSTNEL----AQTLHKKDKIKINKDALSELTSREREIIHLVSIGMS 199

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +IA  L IS +TV  +I++I++K +   R+    Y
Sbjct: 200 NQQIAGQLQISEHTVKAHISNILKKLSLNNRTQLAIY 236


>gi|312880693|ref|ZP_07740493.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
 gi|310783984|gb|EFQ24382.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
          Length = 211

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ++ RE E L   ++G +S EIA  L IS  TV  ++ASI  K   K ++ A+  A+R  
Sbjct: 143 PISPREREVLVQAAQGLSSKEIAAKLYISERTVQTHLASIYDKVGAKNKTEAMLLALRYG 202

Query: 245 IV 246
           +V
Sbjct: 203 LV 204


>gi|291085584|ref|ZP_06571117.1| putative csgAB operon transcriptional regulatory protein
           [Citrobacter youngae ATCC 29220]
 gi|291071350|gb|EFE09459.1| putative csgAB operon transcriptional regulatory protein
           [Citrobacter youngae ATCC 29220]
          Length = 159

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N     T D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 48  NGVFYATEDEQRVVSGLQGVLRGECYFSQK-------LASYLITHSGNYRYNSTESAILT 100

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 101 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 153


>gi|290962896|ref|YP_003494078.1| two-component regulator [Streptomyces scabiei 87.22]
 gi|260652422|emb|CBG75555.1| putative two-component regulator [Streptomyces scabiei 87.22]
          Length = 222

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 11/173 (6%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + +   D      +      R   L    F              + +      
Sbjct: 48  PDVVLMDIRMPGMDGLEATRRIVAAGGRTRVLIVTTFDLDEYAYDGLRAGASGFLLKDAR 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVEC 193
              +  G+  +     ++         LL AY   +          D     L+ RE E 
Sbjct: 108 PEELVAGIHAVATGDAVVAPSLTRR--LLDAYAHQVLAPSGTAPAADPRLESLSEREHEV 165

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I +G T+ EIA  L ++ +TV  ++  ++ K   + R  A+  A    +V
Sbjct: 166 LVAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVITAYDAGLV 218


>gi|225025240|ref|ZP_03714432.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC
           23834]
 gi|224941998|gb|EEG23207.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC
           23834]
          Length = 215

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 75/203 (36%), Gaps = 21/203 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLV----RCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           L+    LF+ + L  +++ ++ F++V      +   +  +++       ++  PV +  P
Sbjct: 10  LVDDHPLFR-RGLSFLLAQEYGFEIVAEATDGLEGVKLARFHRPDLVLLDVEMPVMNG-P 67

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKS 175
           E +            L   ++     L           IL++   +  + A  QA   + 
Sbjct: 68  EALAQMLDFQPGLPVLMLTISEDADNLKKCLELGARGYILKNADTDFLVEAIRQAVAGQQ 127

Query: 176 -------------YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                           H      LT RE + L +++ G ++  IA  + +S NTV  ++ 
Sbjct: 128 TVSPEMNNAGQSIPPEHSAILDSLTQRERDVLRYVAGGISNKMIARRMFLSENTVKAHMQ 187

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           +I RK     R  A  YA    +
Sbjct: 188 NIFRKLNIDNRVRAAVYARELGL 210


>gi|146281277|ref|YP_001171430.1| two-component response regulator NarL [Pseudomonas stutzeri A1501]
 gi|145569482|gb|ABP78588.1| two-component response regulator NarL [Pseudomonas stutzeri A1501]
 gi|327479436|gb|AEA82746.1| two-component response regulator NarL [Pseudomonas stutzeri DSM
           4166]
          Length = 202

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     L   +     G M L P+   +L + +            
Sbjct: 79  VLEALRNGADGYLLKDMDAEELIEQIRIAATGRMALSPELTQVLAEAIR----------- 127

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       +   LT RE E L  I++G+++  IA  LGI+  TV  ++ +++ K   +
Sbjct: 128 -VRPKPTGQVQFSSLTKREKEVLRQIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLR 186

Query: 232 TRSGAIAYAVRN 243
           +R  A  + + N
Sbjct: 187 SRVEAAVWVLEN 198


>gi|126434190|ref|YP_001069881.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|126233990|gb|ABN97390.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 162

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 161 EIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           +  + A       ++ D+       +LT RE++ L  I  G ++ EIA  L IS  TV +
Sbjct: 73  DPAVTARVLNTYRRAPDMPRALTSVDLTTRELDVLRLIGRGYSNAEIATELHISEVTVKS 132

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I  I  K   + R+ AI Y+  + IV
Sbjct: 133 HIGHIFLKLELRDRAAAIVYSYDHGIV 159


>gi|312196962|ref|YP_004017023.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228298|gb|ADP81153.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 644

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           F LT RE E LT ++EG T+ ++A  L IS  T N ++++I  K     R+ 
Sbjct: 581 FSLTAREQEVLTLLAEGLTNAQLAAELFISERTANRHVSNIYTKLGVHNRTQ 632


>gi|261409608|ref|YP_003245849.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261286071|gb|ACX68042.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 216

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 12/180 (6%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L  +     +V  D     +R       +    + +R  ++   +  T  ++      + 
Sbjct: 42  LLMDGLHADVVLMD-----IRMPVCDGVEGTRRIRERYPDVRVLMLTTFDDDDYIVEALR 96

Query: 128 NR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKD 183
           N    Y        RI  G+  +     +I  D   ++ G+L      + +S ++   + 
Sbjct: 97  NGASGYLLKNIPPDRIIQGIKTVHDGNMLIHPDIARKLTGMLRPTPQPVPRSAEL---EQ 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT  E   +  I+EG ++ EIA  L +S  TV NY+  I+ K   + R+    + ++ 
Sbjct: 154 FGLTPAEKRVVALIAEGLSNKEIAAQLYLSEGTVKNYVTEILGKLNLRDRTQIAIFYLKK 213


>gi|18104535|gb|AAL59595.1|AF393621_2 CinR [Rhizobium etli]
          Length = 241

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I
Sbjct: 179 LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|38234803|ref|NP_940570.1| putative two component system response regulator protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38201067|emb|CAE50791.1| Putative two component system response regulator protein
           [Corynebacterium diphtheriae]
          Length = 212

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            P   ++   R    G  A       +           LT RE+E L  ++ G ++ +I 
Sbjct: 114 APPEELLAAVRSAAEGDTALSPTVANRLMSRVRAPRNSLTPRELEVLKLVAGGSSNRDIG 173

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 174 RRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIAREQGVL 212


>gi|297516127|ref|ZP_06934513.1| DNA-binding transcriptional regulator CsgD [Escherichia coli OP50]
          Length = 114

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 33  LASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 92

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 93  FKKIAVKNRTQAVSWA 108


>gi|284046997|ref|YP_003397337.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951218|gb|ADB53962.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 223

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 5/156 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+  + +  +   P  L   V     + +         Y + T D   +   ++ +  +
Sbjct: 66  GLAVLEAFRGIAGAPAFLALSVSDAAEDVVPMVRAGARGYVTKTIDTPALLDAIVRV-RQ 124

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G      RL    L    QA    + +    +  +LT RE E L  ++ G     IA  L
Sbjct: 125 GEPYFSPRLAAFVL----QAFSAPAEEQADDELDQLTPREREVLHHLARGYAYKRIAARL 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GIS  TV  ++ S++RK    +R     +A    +V
Sbjct: 181 GISPRTVETHVGSVLRKLQLSSRHELSHWAASRGLV 216


>gi|134103684|ref|YP_001109345.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916307|emb|CAM06420.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 218

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 3/134 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F      +    G    +         +   +  +     ++         LL  +    
Sbjct: 83  FDLDEYALAALRGGAGGFLLKDTPPDGLVTAVRSVASGDAVVSPSVTRR--LLDRFLGGD 140

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             +       D  LT RE E L  +++G ++ E+A  L +S  T+  ++  I+ K   + 
Sbjct: 141 GGALRDPGVLDV-LTEREREVLVLVAKGLSNAELASRLFLSEATIKTHVGRILSKLDIRD 199

Query: 233 RSGAIAYAVRNNIV 246
           R  A+  A    +V
Sbjct: 200 RVQAVVLAYETGLV 213


>gi|145594766|ref|YP_001159063.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
 gi|145304103|gb|ABP54685.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
          Length = 231

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 3/143 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +       L EN+        R        +      +     G  +   R+ +   
Sbjct: 87  PVRVLILARADLEENVLGALCAGARGFLPPEVSSTELAAAIRSVAAGDAVAAPRILD--R 144

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L    A++         +  + LTGRE E L  ++ G+++ EIA  L +S  TV  ++ +
Sbjct: 145 LLNQLADLLPDPAATPSRLLDSLTGREREVLVQVARGRSNAEIAQELSVSETTVKTHVGN 204

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K   + R  A+  A  + ++
Sbjct: 205 VLTKLRLRDRVQAVVLAYESGLI 227


>gi|298248387|ref|ZP_06972192.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551046|gb|EFH84912.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 215

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L+ +++G  + EIA  L +S  TV N+++++  K     R  AI  A    
Sbjct: 154 ELTEREREILSLLAQGLNNAEIAQRLVLSLKTVRNHLSNVFNKLQVADRVQAIIRAREAG 213

Query: 245 I 245
           +
Sbjct: 214 L 214


>gi|293394993|ref|ZP_06639281.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera
           DSM 4582]
 gi|291422521|gb|EFE95762.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera
           DSM 4582]
          Length = 222

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD----------RLWEIG--LLAAYQAN 171
            G+D R   LT   AR  +  ++       +L+D          RL   G  +++   A+
Sbjct: 88  DGVDARIIVLTVSDARNDVYALIDAGADGYLLKDSEPEQLLTSIRLAAEGENVISDAVAD 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S         +LT RE++ L  ++ G ++ ++AV L IS  TV  +I +++RK   +
Sbjct: 148 YLSSRSEQHDPFADLTERELDVLQEVARGMSNKQVAVQLHISEETVKVHIRNMLRKLDVR 207

Query: 232 TRSGAIAYAVRNN 244
           +R  A    + + 
Sbjct: 208 SRVAATVMYLEHK 220


>gi|302869068|ref|YP_003837705.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|302571927|gb|ADL48129.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
          Length = 978

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA  A               LT RE E L  ++EG ++  IA  L IS  T + +++ I+
Sbjct: 885 AATLARRVGLRGTGRPGPDLLTSREQEVLRLVAEGHSNSRIAERLFISPKTASVHVSRII 944

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R  A A A R  ++
Sbjct: 945 AKLDVTNRVEAAALAHRLGLL 965


>gi|149183304|ref|ZP_01861745.1| transcriptional regulator [Bacillus sp. SG-1]
 gi|148848997|gb|EDL63206.1| transcriptional regulator [Bacillus sp. SG-1]
          Length = 74

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +     LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A
Sbjct: 3   DNEFTHKPLLTKREKEVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQA 62

Query: 237 IAYAVRNN 244
           +   +R  
Sbjct: 63  VVELLRMG 70


>gi|330502102|ref|YP_004378971.1| regulatory protein LuxR [Pseudomonas mendocina NK-01]
 gi|328916388|gb|AEB57219.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01]
          Length = 868

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           LL  +    L  RL+E            +  +        L+ RE+  L  I++G ++ E
Sbjct: 775 LLPGEAGQSLHQRLFEPA---------PRLDEPASAGTALLSSRELAVLQLIAQGYSNQE 825

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L IS +TV  +   I  K   + R+ A+A A    +
Sbjct: 826 IADRLFISLHTVKTHARRINVKLGVQRRTQAVAMAKAQGL 865


>gi|302526068|ref|ZP_07278410.1| two component system DNA binding response regulator [Streptomyces
           sp. AA4]
 gi|302434963|gb|EFL06779.1| two component system DNA binding response regulator [Streptomyces
           sp. AA4]
          Length = 205

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA   A+     +        L+ RE+E L  +++G ++ EI+  L +S+ TV +++  
Sbjct: 123 VLAPAVAHRLM--NRMRTPAAALSPREIEVLGLVADGLSNLEISKRLFLSQATVKSHLVH 180

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K    +R+ A+A      ++
Sbjct: 181 IYAKLGVDSRTAAVAAGKARGLI 203


>gi|108798589|ref|YP_638786.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119867689|ref|YP_937641.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|108769008|gb|ABG07730.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119693778|gb|ABL90851.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
          Length = 163

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 161 EIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           +  + A       ++ D+       +LT RE++ L  I  G ++ EIA  L IS  TV +
Sbjct: 74  DPAVTARVLNTYRRAPDMPRALTSVDLTTRELDVLRLIGRGYSNAEIATELHISEVTVKS 133

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I  I  K   + R+ AI Y+  + IV
Sbjct: 134 HIGHIFLKLELRDRAAAIVYSYDHGIV 160


>gi|21222754|ref|NP_628533.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|10129764|emb|CAC08319.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 226

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           L   +    + +   E+   V  T    E+I    G   R         +     +    
Sbjct: 69  LDGIETTRRLTEEHPEVAVVVLTTFADDESILGALGAGARGYLTKNAGRQDITRAIRAAG 128

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIA 207
            G+ +L DR  +  LLA  +     +      +    +LT RE E L  I +G ++  IA
Sbjct: 129 AGQSVL-DREVQNRLLATARTKAAPAPGDAARQPLPDDLTPREREVLALIGQGLSNRGIA 187

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS  TV  +I ++  K   + R+ A+  A+   +
Sbjct: 188 EKLFISEATVKTHINNLFAKAHIRDRADAVRRAIGAGL 225


>gi|304321086|ref|YP_003854729.1| putative two-component response regulator protein [Parvularcula
           bermudensis HTCC2503]
 gi|303299988|gb|ADM09587.1| putative two-component response regulator protein [Parvularcula
           bermudensis HTCC2503]
          Length = 217

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            LLAA       +   +   +  LT RE E L  ISEGKT+  IA  L IS  TV  ++ 
Sbjct: 133 ALLAAVLTPKAAAPPEYHLVE-RLTDREREVLRLISEGKTNKAIARELVISPATVKAHVE 191

Query: 223 SIMRKTATKTRSGAIAYAVR 242
             + K     R+ A    VR
Sbjct: 192 RCLAKLGAADRTQAAVMMVR 211


>gi|332521837|ref|ZP_08398286.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
 gi|332042509|gb|EGI78711.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
          Length = 453

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           + EI  L A      KS          L+ RE E L  IS GKT+ EIA+ L IS NTV 
Sbjct: 366 IEEIKELTATVHKQ-KSNKKEIETTQLLSFRETEILQLISLGKTNKEIALELHISENTVK 424

Query: 219 NYIASIMRKTATKTR 233
            ++ +I  K   K+R
Sbjct: 425 YHVKNIYTKLNIKSR 439


>gi|289523811|ref|ZP_06440665.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502955|gb|EFD24119.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 211

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 16/197 (8%)

Query: 57  GASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELF 109
           G   +L  R +          +   +++    P   +  + +   D    V Q R  EL 
Sbjct: 17  GFKSYLENRENIKLVGEASDGESALNVIKDQLPDVALIDIRMPGIDGVTLVRQIRQEELK 76

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
                    +         R             G +L       +LR             
Sbjct: 77  VACLMLTSYDAQQYVLASLRA---------GAKGYILKTASPEELLRAIEIVASQGVYLD 127

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             +  + +        L+ RE E L     G++S EIA  L IS  TV  ++ASI  K  
Sbjct: 128 KEVAAAVEEPGFTPESLSPREREVLLLAGRGESSKEIASKLYISERTVQTHLASIYDKLG 187

Query: 230 TKTRSGAIAYAVRNNIV 246
            + ++ A+  A++  +V
Sbjct: 188 ARNKTEALLLALKYGVV 204


>gi|261212992|ref|ZP_05927276.1| transcriptional regulator VpsT [Vibrio sp. RC341]
 gi|260838057|gb|EEX64734.1| transcriptional regulator VpsT [Vibrio sp. RC341]
          Length = 224

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           IL+D +W    LA      +++ +         +LT RE + +  +  G ++ EIA  L 
Sbjct: 125 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217


>gi|229505909|ref|ZP_04395418.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286]
 gi|229510237|ref|ZP_04399717.1| transcriptional regulator VpsT [Vibrio cholerae B33]
 gi|229514364|ref|ZP_04403825.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21]
 gi|229517633|ref|ZP_04407078.1| transcriptional regulator VpsT [Vibrio cholerae RC9]
 gi|229522476|ref|ZP_04411892.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80]
 gi|229526498|ref|ZP_04415902.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426]
 gi|229528149|ref|ZP_04417540.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)]
 gi|229605441|ref|YP_002876145.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236]
 gi|229334511|gb|EEN99996.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)]
 gi|229336656|gb|EEO01674.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426]
 gi|229340461|gb|EEO05467.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80]
 gi|229345669|gb|EEO10642.1| transcriptional regulator VpsT [Vibrio cholerae RC9]
 gi|229348344|gb|EEO13302.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21]
 gi|229352682|gb|EEO17622.1| transcriptional regulator VpsT [Vibrio cholerae B33]
 gi|229356260|gb|EEO21178.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286]
 gi|229371927|gb|ACQ62349.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236]
          Length = 214

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           IL+D +W    LA      +++ +         +LT RE + +  +  G ++ EIA  L 
Sbjct: 115 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 174

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 175 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 207


>gi|184201310|ref|YP_001855517.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581540|dbj|BAG30011.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 270

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT RE E LT ++ G +++EIA  L + R TV  +++++++KT  + R  A+ 
Sbjct: 201 AAASPAGLTARETEVLTAMARGLSNEEIARELVVGRATVKTHVSNVLQKTGARDRVHAVI 260

Query: 239 YAVRNNI 245
           +A  + +
Sbjct: 261 WAFEHGL 267


>gi|254284578|ref|ZP_04959545.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|150425363|gb|EDN17139.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
          Length = 224

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           IL+D +W    LA      +++ +         +LT RE + +  +  G ++ EIA  L 
Sbjct: 125 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217


>gi|154251588|ref|YP_001412412.1| two component LuxR family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155538|gb|ABS62755.1| two component transcriptional regulator, LuxR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 213

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 39/76 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                     G+   LT RE++ L  +++G+++  IA  L I+ +TV  ++ S+  K   
Sbjct: 137 RRLAQDARTSGQKATLTSRELQVLECLADGQSNKMIAQTLSITEDTVKAHLKSLYEKLGA 196

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+A ++R  ++
Sbjct: 197 SDRAHAVAISLRQQLI 212


>gi|77461110|ref|YP_350617.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385113|gb|ABA76626.1| LuxR family regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 235

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +   + GKT+ EI  IL ++  TVN +I +++ K     +  AI  A +   
Sbjct: 175 LSTRELEIVRLCAYGKTAWEIGQILNVAERTVNYHIKNLIVKLNACNKMSAIVKASKLGF 234

Query: 246 V 246
           +
Sbjct: 235 L 235


>gi|294667407|ref|ZP_06732625.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602848|gb|EFF46281.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 923

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D     D   + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R 
Sbjct: 839 SGDDDPAGDI-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRE 897

Query: 235 GAIAYAVRNNIV 246
           GA+A A++  ++
Sbjct: 898 GALAQALQRGLL 909


>gi|294637446|ref|ZP_06715736.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC
           23685]
 gi|291089387|gb|EFE21948.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC
           23685]
          Length = 239

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H     +   + M + +     +  +  + ++L+    R +   R  ++      Q +
Sbjct: 110 VLHDADNQLAMLSLMVDDHSLSIVEQNQGALQMLLINAHERFMTGQRQLQV------QQH 163

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             KS ++    +   + RE E L W S GKT  EIA+ILGI   TV  +I ++++K    
Sbjct: 164 NIKSNNM----ENIFSARENEILYWASMGKTYQEIALILGIKSGTVKFHIGNVVKKLGVL 219

Query: 232 TRSGAIAYAVRNNIV 246
               AI   V   ++
Sbjct: 220 NAKHAIRLGVELQLI 234


>gi|320007637|gb|ADW02487.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 210

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA   A+     D        LT RE+E L  + EG ++ +I+  L +S+ TV +++ 
Sbjct: 127 SALAPAVAHRLM--DRMRTPAQALTRRELEVLQLVGEGLSNQQISKRLFLSQATVKSHLV 184

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +R+ A+A A    ++
Sbjct: 185 HIYAKLGVDSRTSAVAAATARRLI 208


>gi|194438019|ref|ZP_03070112.1| transcriptional regulator CsgD [Escherichia coli 101-1]
 gi|194422955|gb|EDX38949.1| transcriptional regulator CsgD [Escherichia coli 101-1]
          Length = 190

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 109 LASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 168

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 169 FKKIAVKNRTQAVSWA 184


>gi|171915706|ref|ZP_02931176.1| DNA-binding response regulator [Verrucomicrobium spinosum DSM 4136]
          Length = 220

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 11/159 (6%)

Query: 91  ALSEKDKYYNVLQRPTELF---CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +S         +R  +       VF    +           Y   T     I   +   
Sbjct: 70  GMSGLQGIRLFRERSPDTLVIILTVFEDDEKIFDAICAGAAGYLLKTAGADAIVSAIREA 129

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +          +A     MF         D+ L+ RE E L  + +G    EIA
Sbjct: 130 LAGGSPMNP-------RIARRVLEMFSKL-APKTHDYGLSAREKEILDLMVKGLIKKEIA 181

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S +TV+ Y+  I  K    TR+GA+A A++  ++
Sbjct: 182 DRLTLSVHTVDTYLRRIYEKLEVNTRTGAVAKALKERLI 220


>gi|220914644|ref|YP_002489953.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219861522|gb|ACL41864.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 230

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++EG ++ EIA    +S  TV  ++  I+ K   + R  A+ YA    
Sbjct: 162 DLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|220932886|ref|YP_002509794.1| regulatory protein LuxR [Halothermothrix orenii H 168]
 gi|219994196|gb|ACL70799.1| regulatory protein LuxR [Halothermothrix orenii H 168]
          Length = 887

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  I  G ++ EIA  L I+  T   +I++I  K     R+ AI  A++  
Sbjct: 817 PLSERELEILGLIVNGLSNKEIAKKLYITVGTTKWHISNIYGKLGVNKRAQAIKKALQLE 876

Query: 245 IV 246
           ++
Sbjct: 877 LI 878


>gi|320325287|gb|EFW81354.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 189

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 21/189 (11%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-------- 130
            S++P   ++    S       +++       P F     N       D+          
Sbjct: 1   MSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAKYQL 60

Query: 131 -CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFKSYDVHW- 180
               TF   D + +   L L   + +     R+ E        L  +   + K+   H  
Sbjct: 61  SSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHEL 120

Query: 181 ---GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+
Sbjct: 121 FPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 180

Query: 238 AYAVRNNIV 246
             A+   +V
Sbjct: 181 YKAINIGMV 189


>gi|315093205|gb|EFT65181.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 218

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 67/176 (38%), Gaps = 10/176 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V    P  ++  + +   D       ++  +++   +  T   +      +D      
Sbjct: 40  DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99

Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                +   +  GL  +     ++  +    +   + +Q +      V   K  +LT RE
Sbjct: 100 MLKNAEAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGST-----VTGSKAEQLTARE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E    ++ G ++ +IA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 155 IEVAKLVARGLSNAQIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|300788286|ref|YP_003768577.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299797800|gb|ADJ48175.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 195

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 40/83 (48%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              L    A+  +       KD   T RE E +  ++EG ++ EIA  + +++ TV  ++
Sbjct: 101 AHRLLRLIADRRQGGGWSAFKDDPFTPREREVVECLAEGMSNTEIAARMSMAQRTVKYHV 160

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
           + ++ K   + R+ A+A A  + 
Sbjct: 161 SHVLAKLGARDRAHAVALAYGSG 183


>gi|297623722|ref|YP_003705156.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297164902|gb|ADI14613.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 226

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             I      E+ L       + +S      ++  LT RE + L  I  G+++ EIA  LG
Sbjct: 130 EAIYAAARGEVRLHPEAAKRLLRSVRTSDMRE-ALTARETDILRHIGRGESNKEIAAALG 188

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  TV  +++ ++ K    +R+ A  +A++  +V
Sbjct: 189 LSELTVKTHVSRLLSKLGLASRTQAALFALKEGLV 223


>gi|271963445|ref|YP_003337641.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506620|gb|ACZ84898.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 226

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 74/219 (33%), Gaps = 9/219 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D        + A+     A   + V  +    ++   +V S  P  ++  + +
Sbjct: 1   MIRVLLADDEAMIRAGVRAILA---ADPEIEVVAEAGDGREAIDLVLSHRPDVVLLDIRM 57

Query: 93  SEKDK--YYNVLQRPTELFCPVFHT---LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              D       L+R       V  T     + I    G       L     R  +  +  
Sbjct: 58  PRMDGLAAVAELRRVAPGTAVVMLTTFGEDDYIARALGEGAGGFLLKSGDPRELLAGIHA 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             +G   L  R+    ++                +   LT RE + L  + EG ++ +IA
Sbjct: 118 VAEGAAYLSPRVAHR-VITQLTGGRMTRVVAAREQVAALTPRERDVLALVGEGLSNGQIA 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +   TV  ++++I+ +   + R  A   A    ++
Sbjct: 177 RRLYLVEGTVKAHVSAILTRLGARNRVQAAILAHEAGLL 215


>gi|227548560|ref|ZP_03978609.1| two-component response regulator [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079389|gb|EEI17352.1| two-component response regulator [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 201

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCP------VFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +V  + + E D    V +R      P       + T  + +         Y         
Sbjct: 49  VVTDIQMPEIDG-IEVTRRLVAAGGPPVLILTTYDTQADVLAAVEAGALGYMLKDAPEPE 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   ++      R++        G+LA    +           D  L+ RE+E L  +  
Sbjct: 108 LHAAVLSAAGGKRVLSP---QIAGVLAERVMH----------PDEALSTREIEILQALQT 154

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L IS  TV  ++  I  K     R+ A+  A    I+
Sbjct: 155 GASNREIASSLFISEATVKTHLIHIYSKLGVDNRTAAVDKARERRII 201


>gi|111021467|ref|YP_704439.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820997|gb|ABG96281.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 546

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--------ANMFKSYDVHWGK 182
               ++ AR+R  + L+          ++      A Y+          +   +      
Sbjct: 419 IGAPYECARVRESVALVCRDLGDDDTAQMEHDLASATYRQLGAVPDLERLRAEFRPDPAV 478

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT REV  L  ++ GK++  +A  L +S  TV  ++++I  K    +RS A AYA  
Sbjct: 479 STPLTPREVCVLRLVAAGKSNRAVATELFLSEKTVARHLSNIFVKLGISSRSAATAYAYE 538

Query: 243 NNIV 246
           + +V
Sbjct: 539 HRLV 542


>gi|30314824|emb|CAD70192.1| putative HTH_LUXR domain-containing transcription activator
           [Pseudomonas syringae]
          Length = 238

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             G +  +  L F       G       L  + + ++R+   +   L      + +S + 
Sbjct: 119 YLGEEKAFSLLRFANKETGTGSTQGEYSLAAEVKSLVREFHHK---LTGLVMGVNESDET 175

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                F +T RE E   W + GKT +EIAVIL IS+ TV+ +I++++ K   +T+  A  
Sbjct: 176 -----FTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTKLQACI 230

Query: 239 YAVRNNIV 246
              +  I+
Sbjct: 231 QLTKMGIL 238


>gi|84503539|ref|ZP_01001590.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84388029|gb|EAQ01077.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 196

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 1/115 (0%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           + + +VAR  +G        + +  D L    +        F   +      F LT REV
Sbjct: 83  AASPEVARQAMGFGASGFLPKTLAPDELIR-AVDRLVAGGTFLPDEAVARMSFSLTPREV 141

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +  I+ G ++ EIA  LG+   TV  ++ ++ RK   + R+ A   A    +V
Sbjct: 142 EVVRGIAAGYSNKEIARELGVQEVTVKLHVKTLSRKLEARNRTHAAMRARDLGLV 196


>gi|84497630|ref|ZP_00996452.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
 gi|84382518|gb|EAP98400.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
          Length = 210

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 19/135 (14%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   +          D     L   + R  +G  +L P     L +RL            
Sbjct: 90  IVRAVESGARGYLLKDTPPAVLADAIRRAALGETVLAPPVAARLAERLRAPA-------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        ELT RE++ L  ++ G ++ E+   L I   TV  ++  I  K    
Sbjct: 142 -----------QVELTPRELDVLQAVARGLSNGEVGRELFIGEATVKTHLLRIFAKLEVT 190

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A +  ++
Sbjct: 191 DRTAAVTAAYKIGLI 205


>gi|116622583|ref|YP_824739.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225745|gb|ABJ84454.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 210

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 16/169 (9%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
            P  +V   A+   +               +  T PE       M      +   +    
Sbjct: 51  HPRVVVMDFAMPSMNGAVAARH--------ILRTAPETAILILSMHAEASYVRTCLEAGV 102

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAA---YQANMFKSYDVHWGK-DFELTGREVECLTWI 197
            G +L       +  + +  +  +AA          + D+  G     LT RE+E L  I
Sbjct: 103 RGYLL----KNALDLEMVAAVKQVAAGKQVLDRRLGALDLPSGAAPAGLTTRELEVLQLI 158

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             GK++ EIA +L +S NTV  + A+IM+       +  + YA+R  +V
Sbjct: 159 VHGKSNKEIAAVLSLSANTVAVHRANIMQTLGIHNTAELVVYAIRQGLV 207


>gi|227875745|ref|ZP_03993873.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269976705|ref|ZP_06183681.1| two-component response regulator [Mobiluncus mulieris 28-1]
 gi|306819021|ref|ZP_07452738.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227843687|gb|EEJ53868.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269935070|gb|EEZ91628.1| two-component response regulator [Mobiluncus mulieris 28-1]
 gi|304648214|gb|EFM45522.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 220

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 20/210 (9%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-- 107
             L + +G    + + WD+   +       S     L+  + +   D    + +      
Sbjct: 17  RLLVDTLGREADIEIAWDVDSGEAALEAFKSGPVEILLLDLQMPGMDGIETITEFQRRDE 76

Query: 108 -----------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                          V              ++    +   + R   G ++  PK   ++ 
Sbjct: 77  PPLIVVVSALTTLDKVQAAFRAGAVGFFMKEDDAGLIAQSLRRALRGELVFSPKCSQVVV 136

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            RL  +   AA      KS+ +       L+ RE++ +  ++E   + +IA  L IS  T
Sbjct: 137 ARLTGLAADAAEGEEYVKSHGI-------LSERELQVVRLVAEALENKQIASELDISVAT 189

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++ SIM K  T  R+G +A A R  ++
Sbjct: 190 VKKHVQSIMDKLGTDNRAGIVAKAFRAGLL 219


>gi|269957500|ref|YP_003327289.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306181|gb|ACZ31731.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 223

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L   ++     D    ++T  + ++  G   +    + + R  L E       Q  
Sbjct: 92  VFGALEAGVSGFLLKDAEPETITTAIRQVAAGNGTI---DQTLTRRILREF-----VQRR 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +      G    LT RE E L  +++G ++DEIA  L +  +TV +++A ++ K   +
Sbjct: 144 SLQPVSTSRGNGV-LTSREQEILLLLAQGMSNDEIARTLVVELSTVKSHLARMLPKLGVR 202

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A+ +A +N  V
Sbjct: 203 SRLQAVVWAYQNRFV 217


>gi|163859318|ref|YP_001633616.1| nitrate/nitrite response regulator protein [Bordetella petrii DSM
           12804]
 gi|163263046|emb|CAP45349.1| nitrate/nitrite response regulator protein [Bordetella petrii]
          Length = 220

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
             L +        +    +LT  + R   G  ++       L DR  E       QA+  
Sbjct: 93  QALRDGARGYLVKNIDAEALTAAIRRAATGEPVIADNMTAKLVDRFRE-------QASQG 145

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            + +    +   LT RE E +  ++ G ++  IA  L I+ +TV  ++ +I++K    +R
Sbjct: 146 -AGNAANAERTRLTTREREIVQCLAHGASNKVIARQLDIAESTVKIHVQNILKKLNLTSR 204

Query: 234 SGAIAYAVRNNIV 246
                YAV N +V
Sbjct: 205 VQVAVYAVENGLV 217


>gi|313801796|gb|EFS43030.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|314962915|gb|EFT07015.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
          Length = 218

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 10/176 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V    P  ++  + +   D       ++  +++   +  T   +      +D      
Sbjct: 40  DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99

Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D   +  GL  +     ++  +    +   + +Q +      V   K  +LT RE
Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGST-----VTGSKAEQLTARE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E     + G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 155 IEVAKLGARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|290955012|ref|YP_003486194.1| luxR family two-component response regulator [Streptomyces scabiei
           87.22]
 gi|260644538|emb|CBG67623.1| putative luxR family two-component response regulator [Streptomyces
           scabiei 87.22]
          Length = 230

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 2/167 (1%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V +  P   V  + L + D      +  + +       L       A +D+     +  V
Sbjct: 54  VPALRPQVAVLDVRLPDGDGITVCRELRSRMPELACLMLTSFDDEEALLDSIMAGASGYV 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
            +   G  L+     +     L +    A   A + +        +    LTGRE E L 
Sbjct: 114 LKQIRGSDLVSAVRTVAAGQSLLDPSATARLMARLRQGPQEEREPEALPGLTGREREILA 173

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A +
Sbjct: 174 LIGEGLTNRQIGQRLFLAEKTVKNHISRLLAKLGVERRVQAAVIATQ 220


>gi|260662950|ref|ZP_05863843.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|260552571|gb|EEX25571.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 217

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            DV+      L+ RE E    ++ G T+ EIA  L IS  TV  + A+I+RK   +TR+ 
Sbjct: 145 VDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRAD 204

Query: 236 AIAYAVRNNIV 246
            + YA+ ++++
Sbjct: 205 LVRYAIHHHLI 215


>gi|226363249|ref|YP_002781031.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226241738|dbj|BAH52086.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 276

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 14/155 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL      S  D   N+   P      V      +      +                 
Sbjct: 53  MDLRFGPGTSGVDATRNLRSLPNPPHVLVVTNYDTDADILDAVAAGA----------AGY 102

Query: 144 LMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           L+   P   ++   R    G  +L+   A+   +          L+ RE++ LT ++ G+
Sbjct: 103 LLKDTPPPELLAAVRAASAGDSVLSPAVASKLMTR--VRRPATSLSPREIQVLTLVAAGR 160

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++ EI   L +S  TV +++  I  K   K+R+ A
Sbjct: 161 SNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSA 195


>gi|62737761|gb|AAX98178.1| response regulator [Streptomyces aizunensis]
          Length = 201

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K +     +   L+ RE E L  +S G T+ +I   L IS  TV  ++    +K +   R
Sbjct: 128 KLFRARVVEPPALSDREREVLQLVSLGLTNADIGRQLFISEATVKTHLLRSFKKLSVSDR 187

Query: 234 SGAIAYAVRNNIV 246
           + A+  A++  ++
Sbjct: 188 TAAVITALKLGLL 200


>gi|322436606|ref|YP_004218818.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321164333|gb|ADW70038.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 240

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL A    M K+  V   K + LT RE+E +  I EG ++ ++A    IS  TV  ++++
Sbjct: 154 LLKALHELMQKAAQVPERKTYGLTPRELEVVQCIVEGCSNKDVAKQFTISEETVKRHLSN 213

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  KT   TR     +A+ + +V
Sbjct: 214 IFDKTGVSTRLELALFAIAHKLV 236


>gi|297198108|ref|ZP_06915505.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714199|gb|EDY58233.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 6/173 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNRYCSLT 134
            +V+ D    L+  +  +        ++RP ++     F              + +    
Sbjct: 50  DVVAMDVRMPLMDGIEATR--AVLRTVERPPKIVVVTTFENDEYVYEALRAGADGFLLKR 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-FKSYDVHWGKDFELTGREVEC 193
              A I   + L+     ++    + ++   A Y  +           +  +LT RE E 
Sbjct: 108 ARPAEIVHAVRLVAEGESLLFPASVRQLA--AQYGGDEDGNRAARAAMERAQLTEREAEV 165

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G ++ EIA  L +   TV ++++ ++ K   + R+ A+  A  +  V
Sbjct: 166 LRLMTRGLSNAEIAARLVVGTETVKSHVSGVLAKLGARDRTQAVIAAYESGFV 218


>gi|294627134|ref|ZP_06705722.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598567|gb|EFF42716.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 926

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R GA+A A++  +
Sbjct: 852 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSREGALAQALQRGL 911

Query: 246 V 246
           +
Sbjct: 912 L 912


>gi|229821191|ref|YP_002882717.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567104|gb|ACQ80955.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 230

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D    +L   V R+  G  LL P     + +R  E+    A  A 
Sbjct: 100 VYGALRAGAAGFLLKDVGPDALVDAVRRVHAGDSLLDPSVTRRVIERYVEL----ADAAP 155

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +             LT RE E L  ++ G ++ EI   L +S  TV +++ S++ K    
Sbjct: 156 VLPGAAAAA----RLTRREHEVLLAVARGSSNREIGAALDVSEATVKSHVRSLLAKLGLA 211

Query: 232 TRSGAIAYAVRNNIV 246
           +R   + +A    +V
Sbjct: 212 SRVQLVIFAYSEGLV 226


>gi|330820172|ref|YP_004349034.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
 gi|327372167|gb|AEA63522.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
          Length = 496

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 151 GRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              + R RL    +G L A  A + +           L+ RE E L  IS G ++ E A 
Sbjct: 399 REEVERGRLCGEAVGALVAQGAPVARRTARRGTAGPHLSARETEVLRVISRGASNKEAAQ 458

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S +TV  ++ ++ RK    TR+ A   A    ++
Sbjct: 459 ELTMSPSTVRTHVENVFRKLDCSTRAAATLKASSLGLI 496


>gi|323165527|gb|EFZ51314.1| putative csgAB operon transcriptional regulatory protein [Shigella
           sonnei 53G]
          Length = 142

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 61  LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 120

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 121 FKKIAVKNRTQAVSWA 136


>gi|288563091|pdb|3KLN|A Chain A, Vibrio Cholerae Vpst
 gi|288563092|pdb|3KLN|B Chain B, Vibrio Cholerae Vpst
 gi|288563093|pdb|3KLN|C Chain C, Vibrio Cholerae Vpst
 gi|288563094|pdb|3KLN|D Chain D, Vibrio Cholerae Vpst
 gi|288563095|pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563096|pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563097|pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563098|pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp
          Length = 225

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           IL+D +W    LA      +++ +         +LT RE + +  +  G ++ EIA  L 
Sbjct: 126 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 185

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 186 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 218


>gi|229819546|ref|YP_002881072.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229565459|gb|ACQ79310.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 222

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +     D R   L   +  +  G  ++ P+   I R  L   G       + 
Sbjct: 91  FSGLRAGASGFLLKDTRPADLVDAIRTVASGDAVVSPR---ITRRMLELFGEYLPQGGD- 146

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +       +  ELT RE+E L  ++EG ++ EIA    +S  TV  ++  ++ K   + 
Sbjct: 147 -RDTSASDPRLAELTPRELEVLVAVAEGLSNLEIADRFVVSEATVKTHVGRVLAKLGLRD 205

Query: 233 RSGAIAYAVRNNIV 246
           R  A+  A    +V
Sbjct: 206 RVQAVVLAYETGLV 219


>gi|297194468|ref|ZP_06911866.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718721|gb|EDY62629.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 227

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   L    +     D R   L   +  +  G  LL P     L  R+          A 
Sbjct: 97  IMEALRAGASGFLVKDTRPADLLAAIRTVAAGESLLSPGPTSRLIARVLS--------AP 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + +   G D  LT RE + LT ++ G  + EIA  LG+S  T   +++ IM K   +
Sbjct: 149 QVPAANGAGGPDV-LTDRERQVLTLVARGLNNTEIAESLGLSPLTAKTHVSRIMSKLCAR 207

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A  + +V
Sbjct: 208 DRAQLVIVAYESGLV 222


>gi|167644589|ref|YP_001682252.1| two component LuxR family transcriptional regulator [Caulobacter
           sp. K31]
 gi|167347019|gb|ABZ69754.1| two component transcriptional regulator, LuxR family [Caulobacter
           sp. K31]
          Length = 212

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE   L  ++ G+ + +IA  L +S +TV  ++ SI  K     R+ A+  A R
Sbjct: 147 DEALSEREAHVLRLVAAGRANKQIAWELSLSEDTVKAHLKSIFAKLDVADRTHAVTIAAR 206

Query: 243 NNIV 246
             I+
Sbjct: 207 RGII 210


>gi|15601705|ref|NP_233336.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121586693|ref|ZP_01676477.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121726414|ref|ZP_01679688.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147672305|ref|YP_001215128.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153212168|ref|ZP_01947963.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153801409|ref|ZP_01955995.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153818303|ref|ZP_01970970.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153821011|ref|ZP_01973678.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153824729|ref|ZP_01977396.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|153827751|ref|ZP_01980418.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|227812518|ref|YP_002812528.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|254224744|ref|ZP_04918360.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|254850118|ref|ZP_05239468.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746307|ref|ZP_05420254.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101]
 gi|262158188|ref|ZP_06029306.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1]
 gi|262169213|ref|ZP_06036906.1| transcriptional regulator VpsT [Vibrio cholerae RC27]
 gi|262191930|ref|ZP_06050097.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93]
 gi|9658390|gb|AAF96848.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549121|gb|EAX59156.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121631162|gb|EAX63537.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124116720|gb|EAY35540.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|124123075|gb|EAY41818.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|125622807|gb|EAZ51125.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|126511116|gb|EAZ73710.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126521385|gb|EAZ78608.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146314688|gb|ABQ19228.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|148876596|gb|EDL74731.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|149741685|gb|EDM55714.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|227011660|gb|ACP07871.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227015599|gb|ACP11808.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|254845823|gb|EET24237.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736061|gb|EET91459.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101]
 gi|262022494|gb|EEY41202.1| transcriptional regulator VpsT [Vibrio cholerae RC27]
 gi|262030066|gb|EEY48712.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1]
 gi|262032164|gb|EEY50735.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93]
          Length = 224

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           IL+D +W    LA      +++ +         +LT RE + +  +  G ++ EIA  L 
Sbjct: 125 ILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLF 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217


>gi|16332248|ref|NP_442976.1| response regulator like-protein [Synechocystis sp. PCC 6803]
 gi|1653878|dbj|BAA18788.1| response regulator like protein [Synechocystis sp. PCC 6803]
          Length = 228

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    +  ELT REV  L  ++EGKT+ EI   L ++ +TV  Y+ +IMRK   + R+ A
Sbjct: 158 DYRKSQKDELTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSA 217

Query: 237 IAYAVRNNIV 246
               +R   +
Sbjct: 218 AIAGLREGYL 227


>gi|291299028|ref|YP_003510306.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568248|gb|ADD41213.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF +L          D     +   V  +  G  LL P     + DR             
Sbjct: 93  VFESLEHGAAGFLTKDTDPEFILHAVRVVAAGESLLSPGVTRRVIDRFTR--------GR 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++ + H G D  LT RE E L W++ G ++DEIA  L +S  TV  ++   M K   +
Sbjct: 145 HARTGEPHPGLD-SLTARETEILGWVATGLSNDEIAERLVVSPATVRTHVGRAMMKLRAR 203

Query: 232 TRSGAIAYAVRNNI 245
            R+  +  A R++I
Sbjct: 204 DRAQLVVIAYRSDI 217


>gi|297562533|ref|YP_003681507.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846981|gb|ADH69001.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 222

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +A + +      L+    +    F              + +     
Sbjct: 49  DVVLMDIRMPGVDGLAAAGRILADPALEATRVVILTTFDLDEYIFEALRAGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   + ++     ++         L+A Y A    S      +   LT RE E + 
Sbjct: 109 EPGDLLRAVRVVHGGEALLSPGITRR--LIADY-ARRPPSAPDPSVRLNGLTEREREVVA 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A    +V
Sbjct: 166 LVGGGLSNEEIAAHLVLSPATAKTHVSRAMVKLGVRDRAQLVVIAYETALV 216


>gi|108799996|ref|YP_640193.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119869121|ref|YP_939073.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|108770415|gb|ABG09137.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119695210|gb|ABL92283.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
          Length = 218

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G T+ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 157 LTERETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216


>gi|161520265|ref|YP_001583692.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189353558|ref|YP_001949185.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160344315|gb|ABX17400.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189337580|dbj|BAG46649.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
          Length = 209

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L     ++L    +   LL    A        H      LT R++E L +++EG  + 
Sbjct: 109 HTLLSAIVMVLNGERYVPPLLLDDGAPYTIEPPRHAAG-APLTPRQIEVLRYLAEGVPNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  LG+S  TV  +I +I R      R+ A A   +  ++
Sbjct: 168 VIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGLI 209


>gi|326331305|ref|ZP_08197597.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium
           Broad-1]
 gi|325950938|gb|EGD42986.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium
           Broad-1]
          Length = 112

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G+++ +IA  L +S  TV  ++++I  K   ++R+ A A+A  + +
Sbjct: 52  LTAREAEVLRLVASGRSNAQIATDLVLSEKTVARHLSNIFTKLDVRSRTAATAFAYEHGV 111

Query: 246 V 246
           V
Sbjct: 112 V 112


>gi|296282761|ref|ZP_06860759.1| regulatory protein, LuxR [Citromicrobium bathyomarinum JL354]
          Length = 252

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQANMF-------K 174
             M      +   +A  RIG +   P  + RI L     E   L A  +  F        
Sbjct: 117 RAMTRAAIVVPVHMAFGRIGAVSFNPLDEDRIDLAADYEEYADLFAILSRAFISSYTVVM 176

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +          L+ REVECL W + GKT  EI++I+  SR TV  ++ +   K     RS
Sbjct: 177 TSPEPLPAGSRLSKREVECLRWAAIGKTDLEISMIMSRSRATVRFHMHNASIKLNAVNRS 236

Query: 235 GAIAYAVRNNIV 246
             +  A +   +
Sbjct: 237 QTVFKAAQLGYI 248


>gi|256396944|ref|YP_003118508.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256363170|gb|ACU76667.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 231

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT ++ GK++ EI+  L +S +TV  ++++++ K   + R+  +  A    +
Sbjct: 168 LTAREREVLTLVARGKSNTEISTELFVSMSTVKTHMSALLAKLGARDRAQLVIRAYEGGL 227

Query: 246 V 246
           V
Sbjct: 228 V 228


>gi|46202045|ref|ZP_00053874.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 211

 Score = 88.1 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 52/157 (33%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +A+   D +  +              +  +  P              + +      ++ 
Sbjct: 55  DLAMPGMDGFSAIGAVRRSAPDIFLVVVSASEEPQTVRKALDSGAHGYICKSAGSASMMA 114

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++  D      ++    A               LT R+ + L  + +GK++ EIA 
Sbjct: 115 GIRAVLEGDTFVSPHIIVPDSAVPAAGEINGEKLQSLLTPRQRDVLGMLRQGKSNKEIAR 174

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L ++  TV  ++ +I+R    + R+ A   A +  +
Sbjct: 175 DLSLAEITVKLHVTAILRALGCENRTQAAILAAKMGV 211


>gi|312194246|ref|YP_004014307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311225582|gb|ADP78437.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 245

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G ++ EIA  L +S  TV  ++  I+ K   + R  A+ +A    +
Sbjct: 174 LTDRERDVLGEVAAGLSNAEIAARLVLSEATVKTHVGRILAKLELRDRVQAVVFAYETGL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|255067698|ref|ZP_05319553.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca
           ATCC 29256]
 gi|255048039|gb|EET43503.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca
           ATCC 29256]
          Length = 218

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
            LL    + +  D ++   +      ++         +    LT RE+E L +++ G ++
Sbjct: 111 FLLDSIRKAVDGDNVFSPEMTTRLVQSLISPSAPRTDQALSTLTPRELEILGYLAAGHSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L ++ +TV  ++ +++RK    +R  A  YAV++ +
Sbjct: 171 KVIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHKV 212


>gi|225076056|ref|ZP_03719255.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens
           NRL30031/H210]
 gi|241758839|ref|ZP_04756952.1| transcriptional regulatory protein DegU [Neisseria flavescens
           SK114]
 gi|224952616|gb|EEG33825.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens
           NRL30031/H210]
 gi|241321047|gb|EER57260.1| transcriptional regulatory protein DegU [Neisseria flavescens
           SK114]
          Length = 218

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
            LL    + +  D ++   + +    ++            E LT RE+E L +++ G ++
Sbjct: 111 FLLESIRKAVDGDNVFSPEMTSRLVQSLISPSPSRSDHLLEQLTPREMEILGYLAAGHSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L ++ +TV  ++ +++RK    +R  A  YAV++ +
Sbjct: 171 KIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHKV 212


>gi|119493450|ref|ZP_01624119.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
 gi|119452694|gb|EAW33873.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
          Length = 215

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV---LQRPTELFC 110
           +Y+    + +   +   +     ++    P  ++  + + E D Y  V    + P   + 
Sbjct: 27  DYLEFRGYEVSTAENGLKAL--ELLELQLPDLIICDIMMPEMDGYSLVKVIREDPRTGWI 84

Query: 111 PVFHTLPENIT-----PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           PV     + ++           + Y    F+   +   +     +   +++        +
Sbjct: 85  PVLFLSAKGLSQDKVKGLNTGADVYIVKPFEPEELVAQVESSLRQASRLIK--------I 136

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            + QA+   S     G   ELT  EV  +  +++G  + E+A  + +S+ T+ +++++++
Sbjct: 137 NSRQADGQPSIQARPG--VELTPTEVRVVQLVAQGLANREVAKAMKVSQRTIESHVSNML 194

Query: 226 RKTATKTRSGAIAYAVRNN 244
            KT    R+    +A+ + 
Sbjct: 195 NKTGLHNRTELARWALESK 213


>gi|37520342|ref|NP_923719.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211335|dbj|BAC88714.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 301

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 8/176 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           EQ    +V  D     V  + ++ +      L +       +   L E+      +D R 
Sbjct: 121 EQLRPDLVLLDVGLPGVSGIEVARRIHSLEPLAK-----ILMVSELEEDFLQAFRVDARG 175

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
           C L    A+  +  + L   G ++    +  +    AY     +           LT RE
Sbjct: 176 CLLKSVEAQELLNAVGLVLSGYLVFGKAIVRLIFEHAYLPEEPRKPGKLA---ISLTKRE 232

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I++  T+ EIA  L IS  TV+++ A +M+K  T+  +G +  AV+  ++
Sbjct: 233 QEILGLIAQEYTNSEIAKHLYISPRTVDSHRARLMQKLGTRNTAGLVRIAVQQGLL 288


>gi|330961628|gb|EGH61888.1| regulatory protein, LuxR [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 77

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L W +EGKT+ +IA+IL +   T++ +IAS ++K     ++ A   A  + 
Sbjct: 16  HLTQREIEVLKWSAEGKTAGDIAIILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSG 75


>gi|256789340|ref|ZP_05527771.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289773226|ref|ZP_06532604.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289703425|gb|EFD70854.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 221

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    L+  +A + +      L     +    F              + +     
Sbjct: 49  DVVLMDIRMPLLDGLAATRRITGDPGLPDVRVVMLTTFELDEYVFEAIRSGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+A + A   +      G+   LT RE E + 
Sbjct: 109 EPEELLRAVRAVVDGDALLSPGVTRR--LIAEFAARSKEP--AAPGEMARLTEREREVMA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|226305790|ref|YP_002765750.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184907|dbj|BAH33011.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 212

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 4/153 (2%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +     +R   L    F          A   + +     + A +   +  +   
Sbjct: 62  GIGATQQIVKAGRRARILVLTTFDDDDHLYPALAAGASGFFVKDTEPAELLGAIRRVAEG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +   + L  +      +A +    D    +   LT RE + L  ++EGK++ EIA  L
Sbjct: 122 EMVFTPELLRRV----VDRAVIGGIADTAVTESVPLTDRESQVLALVAEGKSNQEIADTL 177

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +   TV  ++A++M KT    R     Y ++N
Sbjct: 178 HLGVTTVKTHVANLMSKTGCDNRVRLAVYHLQN 210


>gi|220914117|ref|YP_002489426.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219860995|gb|ACL41337.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 222

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 20/135 (14%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   +    +     D     L   V +   G  +L P+   +L DR+   G        
Sbjct: 101 ILAAVEAGASGYMLKDAPPEQLRQAVLQAAAGGTVLAPRAAALLMDRISNPG-------- 152

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT REV+ L  ++ G ++  IA  L +S  TV  ++  I  K    
Sbjct: 153 ------------TALTPREVQLLELLATGLSNRAIAKQLFVSEATVKTHLVHIYGKLGVD 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+ AIA A +  I+
Sbjct: 201 NRTAAIAAATQRRII 215


>gi|192822729|gb|ACF06195.1| PanR [Pantoea sp. CWB304]
          Length = 246

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 65/172 (37%), Gaps = 13/172 (7%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +++C++  E   +   +    +   P+   + +N    +G    +    ++     + +M
Sbjct: 69  IIKCLSSVESFLWDEDIMFKAQYKLPMIFRMGKNYDIKSGCT--FVLHDYNNNMALLSIM 126

Query: 146 LLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGREVECL 194
           +           IL DR     LL +    +   Y            K   LT RE + L
Sbjct: 127 MGEHCREETKTSILNDRDRLQSLLISAHTKILSLYQEESEIIQQEKKKPGLLTSRENDVL 186

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              S+GKT  EIA  L +   TV  ++A++++K        AI   +   ++
Sbjct: 187 YLASQGKTYSEIACSLKVKEVTVKFHMANVVKKLGVMNAKHAINLGIELKLI 238


>gi|118471080|ref|YP_885478.1| response regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118172367|gb|ABK73263.1| putative response regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 243

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +  G ++ EI+  L +S  TV+ ++  ++RK     R  A   A    +
Sbjct: 172 LTPREQEILALLRSGLSNAEISDRLYLSPRTVSTHVERVLRKLGVANRVAAAVQATELEL 231

Query: 246 V 246
           +
Sbjct: 232 L 232


>gi|184155547|ref|YP_001843887.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|183226891|dbj|BAG27407.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
          Length = 217

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            DV+      L+ RE E    ++ G T+ EIA  L IS  TV  + A+I+RK   +TR+ 
Sbjct: 145 VDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRAD 204

Query: 236 AIAYAVRNNIV 246
            + YA+ ++++
Sbjct: 205 LVRYAIHHHLI 215


>gi|220926479|ref|YP_002501781.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219951086|gb|ACL61478.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 509

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                   D       +LT RE+E L  +  G ++ EI   LG++ NTV N+IA I  K 
Sbjct: 419 HLRRPNRPDKPEAGLSDLTPRELEVLGLMCRGLSNAEIVKKLGVTHNTVRNHIARIYAKI 478

Query: 229 ATKTRSGAIAYAVRNN 244
               R+GA+ +A    
Sbjct: 479 DVHDRAGAVVWARERG 494


>gi|226355186|ref|YP_002784926.1| LuxR family transcriptional regulator [Deinococcus deserti VCD115]
 gi|226317176|gb|ACO45172.1| putative Transcriptional regulator, LuxR family [Deinococcus
           deserti VCD115]
          Length = 762

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 32/235 (13%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVG-----ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           R+  L        R  AL+E  G     A    L  W  + + + D+ +        +  
Sbjct: 529 RLGQLPEASRCFERAQALSEEYGGGEGAAFALGLRSWVAYLQGQQDTALP-------LAQ 581

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +A     K  N L R   L    FH   +            CS     +      +   P
Sbjct: 582 VAWQHMLKVPNALLRYVLLHQMAFH-ARDAGQLSLAARMVGCSEAMRASTGEPWDVCFAP 640

Query: 150 KGRII---LRDRLWEIGLLAAYQANMFKSYDVHWG----------------KDFELTGRE 190
             R +   LR  + E   +   + +  +  D+                   +   LTGRE
Sbjct: 641 HVRRLDTALRTAMGERYEVCRQEGSALRLEDLVPDVAAMLENAVQTTYAETRVTPLTGRE 700

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  +++G +   IA  L IS  TV+ +++S++ K     R     +A+RN +
Sbjct: 701 QDVLRLLAQGISDKRIAQQLNISAATVSKHVSSMLSKLGVHNRVELARWALRNGL 755


>gi|254423092|ref|ZP_05036810.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190581|gb|EDX85545.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 212

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 168 YQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           YQ   F   DV        +  ELT RE++ L  + +G ++ +++  L IS  TV  ++ 
Sbjct: 124 YQGKRFIPADVAMKLAERIESDELTAREIDVLEMMVQGSSTAKLSEALHISEGTVKFHVN 183

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I++K     R+ A+  A+   IV
Sbjct: 184 NILQKLNAHDRTQAVVTALHRGIV 207


>gi|223936999|ref|ZP_03628907.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894280|gb|EEF60733.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 217

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             LT R  E L W+++GKT+ +IA ILGIS +TV  ++  I  K   +TRS A   A+ 
Sbjct: 143 LGLTPRAAETLLWVAQGKTNLDIATILGISESTVKKHLLEIFDKLNIETRSAATLRALE 201


>gi|42782344|ref|NP_979591.1| response regulator receiver domain-containing protein [Bacillus
           cereus ATCC 10987]
 gi|42738269|gb|AAS42199.1| Response regulator receiver domain protein [Bacillus cereus ATCC
           10987]
          Length = 592

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 89/252 (35%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN +          E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL---SEKDKYYNVLQRPTELFCPVFHTLP 117
             +V       Q +D +     P  ++  + +   +  +    + Q+   +   +F T  
Sbjct: 407 --VVGLAENGNQAID-LCGRLQPHVILMDLDMQHMNGVEATKKIKQQWPHIRVLIFTTFQ 463

Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +    +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 464 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 519

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + + 
Sbjct: 520 ETSQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 580 EAVQKALEIGII 591


>gi|56421205|ref|YP_148523.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|138896235|ref|YP_001126688.1| germination protein GerE [Geobacillus thermodenitrificans NG80-2]
 gi|196250193|ref|ZP_03148887.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|261418314|ref|YP_003251996.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297529168|ref|YP_003670443.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319767726|ref|YP_004133227.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|56381047|dbj|BAD76955.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|134267748|gb|ABO67943.1| Germination protein GerE [Geobacillus thermodenitrificans NG80-2]
 gi|196210377|gb|EDY05142.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|261374771|gb|ACX77514.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|297252420|gb|ADI25866.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
 gi|317112592|gb|ADU95084.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 74

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREKEVFELLVQDKTTKEIAKELFISEKTVRNHISNAMQKLGVKGRSQAVIELLRMG 70


>gi|284032204|ref|YP_003382135.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811497|gb|ADB33336.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 219

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 9/174 (5%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQR------PTELFCPVFHTLPENITPPAGMDNRYC 131
           V + +P  ++  + +   D      +       P  +    F T    +       + + 
Sbjct: 48  VDAHFPDLVLMDLRMPRVDGIVATRRVRARKNPPEVVVLTTFDTDENVLHALRAGASGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A+I   +  +     I+       +   AA QA+          +   L+ RE 
Sbjct: 108 LKDTPPAQIVEAVRRVAAGDPILSPAITRRLMERAATQADAHTQAQEALSR---LSPREY 164

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +  ++ GK + EIA  L +S  TV  +I+ I+ K     R+     A    +
Sbjct: 165 DVMLAVARGKANAEIAAELFMSVATVKAHISHILTKLEVSNRTQIALLAHDAGL 218


>gi|165975516|ref|YP_001651109.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250537|ref|ZP_07336734.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251881|ref|ZP_07338052.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244860|ref|ZP_07526959.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247035|ref|ZP_07529089.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249257|ref|ZP_07531254.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251580|ref|ZP_07533487.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253814|ref|ZP_07535668.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256079|ref|ZP_07537867.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258270|ref|ZP_07540013.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260511|ref|ZP_07542205.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|165875617|gb|ABY68665.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649311|gb|EFL79496.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650525|gb|EFL80684.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854305|gb|EFM86511.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856487|gb|EFM88636.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858781|gb|EFM90840.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861044|gb|EFM93050.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863298|gb|EFM95238.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865501|gb|EFM97396.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867730|gb|EFM99575.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869823|gb|EFN01606.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 209

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 18/132 (13%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  +   +      D+    L  ++ +   G  +L    +  L +R  E   L+     
Sbjct: 93  IFALMDAGVDGYLLKDSDTAELVENIRKAAQGETVLSESVKQHLLERRPENDPLSV---- 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    
Sbjct: 149 --------------LTDRERDVLQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVH 194

Query: 232 TRSGAIAYAVRN 243
           +R  A    +  
Sbjct: 195 SRVAATVLYLEQ 206


>gi|119899725|ref|YP_934938.1| LuxR family DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119672138|emb|CAL96052.1| probable DNA-binding response regulator, LuxR family [Azoarcus sp.
           BH72]
          Length = 208

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +       + F LT  +   L  +++GKT+ EIA +LG+S  TV  ++++I R      R
Sbjct: 135 RRSAAPVSERFGLTAAQTRVLELLAQGKTNREIADLLGLSEGTVKVHMSAIFRALGVSNR 194

Query: 234 SGAIAYAVRNN 244
           + A+    R+ 
Sbjct: 195 AQALVVIARHG 205


>gi|27376447|ref|NP_767976.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27349587|dbj|BAC46601.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 225

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G +  EIA  LG+SR TV  +I +I RK    TRS A+  AV+  +
Sbjct: 163 LTPREIDILWGIAKGFSYAEIASHLGLSRQTVPGHIKNIYRKLEVHTRSEAVFEAVQQGL 222

Query: 246 V 246
           +
Sbjct: 223 I 223


>gi|328544601|ref|YP_004304710.1| transcriptional regulatory protein [polymorphum gilvum SL003B-26A1]
 gi|326414343|gb|ADZ71406.1| Transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1]
          Length = 233

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 12/227 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYAL---TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           DL  ++  +  + +    +  L      +GA+H L+    +        +    WP D  
Sbjct: 6   DLSTQLRIVSESTTAQKILDILEANLARIGATHILITGLPMPNRPIDSLVHRYRWP-DTR 64

Query: 88  RCMALSEKDKYYN-----VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                S      +      L         V     ++    A +      L   V  +  
Sbjct: 65  NGSTESPVLHASDSALMLGLASNRATVWTVTAGDMDHSRLLAAVGEGSQILIVPVTELHP 124

Query: 143 GLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISE 199
               +F  G  +      L  + LL        +        +   L+ RE + L   + 
Sbjct: 125 LQAFVFCAGPKLKTGKYELAALELLTDAAFTRLQDIGALSSQRPGALSSRERKVLELTAF 184

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT+ EIA +L IS+ TV+ ++ +   K     ++  +  A+R   +
Sbjct: 185 GKTASEIAELLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231


>gi|325926289|ref|ZP_08187643.1| ATP-dependent transcriptional regulator [Xanthomonas perforans
           91-118]
 gi|325543323|gb|EGD14752.1| ATP-dependent transcriptional regulator [Xanthomonas perforans
           91-118]
          Length = 923

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D     D   + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R 
Sbjct: 839 SGDDDPAGDI-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRE 897

Query: 235 GAIAYAVRNNIV 246
            A+A A++  ++
Sbjct: 898 SALAQALQRGLL 909


>gi|319791685|ref|YP_004153325.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594148|gb|ADU35214.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 250

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 11/153 (7%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYC---SLTFDVARIRI----GLMLLFP--KGRIIL 155
              L   VF      +         Y    +   D+A+  +    G   + P    R++ 
Sbjct: 94  CEPLVVSVFGDEENVLASIEAGAVGYIHKDAAPEDIAQTIVEMKAGASPISPMIARRVLA 153

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGIS 213
           + R  +   LA   A    + +  + ++    L+ RE E LT I+ G +  EIA + G+S
Sbjct: 154 KYRSLQSASLAPGMAASGAAPETAFDENERGLLSAREHEVLTLIARGFSYAEIARLKGLS 213

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TV  +I ++  K A  ++S A+  A R  ++
Sbjct: 214 VHTVQTHIKNLYGKLAVHSKSEAVFEATRLGLL 246


>gi|307700360|ref|ZP_07637400.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307614571|gb|EFN93800.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 217

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 20/210 (9%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-- 107
             L + +G    + + WD+   +       S     L+  + +   D    + +      
Sbjct: 14  RLLVDTLGREADIEIAWDVDSGEAALEAFKSGPVEILLLDLQMPGMDGIETITEFQRRDE 73

Query: 108 -----------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                          V              ++    +   + R   G ++  PK   ++ 
Sbjct: 74  PPLIVVVSALTTLDKVQAAFRAGAVGFFMKEDDAGLIAQSLRRALRGELVFSPKCSQVVV 133

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            RL  +   AA      KS+ +       L+ RE++ +  ++E   + +IA  L IS  T
Sbjct: 134 ARLTGLAADAAEGEEYVKSHGI-------LSERELQVVRLVAEALENKQIASELDISVAT 186

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++ SIM K  T  R+G +A A R  ++
Sbjct: 187 VKKHVQSIMDKLGTDNRAGIVAKAFRAGLL 216


>gi|291450698|ref|ZP_06590088.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353647|gb|EFE80549.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 204

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  +E+       + P  L    F      +         +     
Sbjct: 38  DVVLMDVRMPEVDGIRATERVLAAGGERAPRVLVLTTFENDDHVLAALRAGAAGFLLKRA 97

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   + ++     ++    +  + L      +  ++ +  W     LT RE E L 
Sbjct: 98  EAETLLHAVRVVARSDTLLFPSSVRALAL----AHDPRRAAEPPWAAR--LTDREREVLH 151

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ G T+ EIA  L +   TV +++A+++ KT T+ R+ A+  A    +
Sbjct: 152 LMATGLTNAEIAARLTVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGL 201


>gi|312196093|ref|YP_004016154.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227429|gb|ADP80284.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 220

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  + ++  TV  +++ ++ K   + R  A+ YA  + +
Sbjct: 155 LTEREREVLVLIARGLSNTEIAARIYVTEGTVKTHVSRLLAKLNLRDRVQAVVYAYESGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|323492273|ref|ZP_08097431.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323313586|gb|EGA66692.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 222

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 21/231 (9%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +   D  + + +S +  +S LL          S    +      V A    L R D  Q 
Sbjct: 1   MTNRDNYKITLISDVSMQSKLLKD--------SLEKGLGMQVSIVTADT--LQRMDDGQS 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           Q L+++V  D+ +     +  S+ + Y +   +       +    P + +       R  
Sbjct: 51  Q-LENLVLIDYHY-----LDDSKFESYNSAKAQSESSIKEIVFNCPTDASSSQLFKWRNL 104

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGR 189
              F +      + LL      I+ D +W    +A      F+  +          LT R
Sbjct: 105 VGVFYLDD---EVSLLLKGMDKIMNDEMWLSRKVAQDYIEHFRCANTVTTSQAYANLTKR 161

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           E E +  +  G ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A
Sbjct: 162 EKEIMRLLGHGASNIQIAEELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|197105564|ref|YP_002130941.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196478984|gb|ACG78512.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 226

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 6/154 (3%)

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           D      +R  ++   V   L +  T     A   + Y         +    + +   G 
Sbjct: 74  DLLAEARERYPQVEILVISVLGDETTILAAIAAGASGYILKDALPEDVHATALEVLAGGS 133

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            I    +    +  A   +  +   V       LT RE++ L  I++G T +EIA  LG+
Sbjct: 134 PISPS-IARFIVKRARAESGARPAPVQEAP--HLTPRELDILWGIAKGLTYNEIADRLGL 190

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           SR+TV ++I +I RK    TR  A+  AV+  ++
Sbjct: 191 SRHTVPSHIKAIYRKLQVATRGEAVYEAVQCGLI 224


>gi|146280789|ref|YP_001170942.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501]
 gi|145568994|gb|ABP78100.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501]
          Length = 218

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R++L+   W   +L       ++           LT RE E L+   +G ++ EI
Sbjct: 113 LLEGIRVLLKGGDWLPRVLTERLLGQWRRMRQLAESKTSLTLREREILSLAGKGLSNAEI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S +T+ ++I +++RK     R+ A AY +R+++
Sbjct: 173 AEQLCLSPHTIKSHIHNLLRKIGASNRAEA-AYLLRSHL 210


>gi|126435625|ref|YP_001071316.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|126235425|gb|ABN98825.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 218

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G T+ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 157 LTERETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216


>gi|88800203|ref|ZP_01115771.1| probable two component response regulator transcription regulator
           protein [Reinekea sp. MED297]
 gi|88777049|gb|EAR08256.1| probable two component response regulator transcription regulator
           protein [Reinekea sp. MED297]
          Length = 217

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 41/82 (50%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A      F            LT R+V+ LT++S+G +S EIA  L +S +TV  +I +I
Sbjct: 134 IARLMLQKFHRNTPTPKTPETLTERQVKILTYVSQGFSSKEIAEKLSLSYHTVTTHIKNI 193

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K    +R+ A+  A +  I+
Sbjct: 194 YAKLQVNSRTEALHEAAKLGIL 215


>gi|331695588|ref|YP_004331827.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950277|gb|AEA23974.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 206

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D    +L   V R+  G ++  P    ++ D              
Sbjct: 88  VLAALRAGASGFLCRDTDGFALADAVRRVAAGDVVFGPGIADLVLDAHGAGA-------- 139

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE + +  + +G T+ +I V L +S  TV N++  I RK    
Sbjct: 140 --------SAGPVVLTEREADVVRLVVDGLTARQIGVRLVLSPRTVENHVQRIQRKLGVS 191

Query: 232 TRSGAIAYAVRNNI 245
            R+  + +A+ N +
Sbjct: 192 GRAAMVRFAIENGL 205


>gi|312886495|ref|ZP_07746104.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311301123|gb|EFQ78183.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 263

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++   T RE   L +I+EG +S +IA  L IS NT+ N+  +++RKT  K  +  +  AV
Sbjct: 199 EEAGFTKREKGVLVYIAEGLSSKQIADKLNISENTIVNHKQNMLRKTNAKNVTELVVMAV 258

Query: 242 RNNIV 246
           RN ++
Sbjct: 259 RNRVI 263


>gi|332560426|ref|ZP_08414744.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N]
 gi|332274224|gb|EGJ19540.1| Response regulator receiver protein [Rhodobacter sphaeroides WS8N]
          Length = 105

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 38/53 (71%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +L+ R++E L WI+ GK++ EIA+ILG+SR  V  +++ I++K    +R+ A+
Sbjct: 47  KLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 99


>gi|307328434|ref|ZP_07607610.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886007|gb|EFN17017.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 234

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 10/122 (8%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                     +   L   V  +  G  +L P     L      +  L    A      +V
Sbjct: 110 GAAGYVLKQIKGSDLVSAVRTVASGQSMLDPATTARL------MSTLRGDTAPQEPRDEV 163

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    L+ RE E L  I +G T+ +I   L +S  TV N+I+ ++ K   + R  A  
Sbjct: 164 LAG----LSPREREILVLIGDGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQAAV 219

Query: 239 YA 240
            A
Sbjct: 220 LA 221


>gi|302558086|ref|ZP_07310428.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475704|gb|EFL38797.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 211

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 10/163 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     ++       +  RP      V  T   +      ++                
Sbjct: 57  MDLQFGRGMNGSQATAAITARPGAPRVLVVTTYDTDADTLPAIEAGATG----------Y 106

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   +    R    G      A   +  +        LT RE E L+ ++EG ++
Sbjct: 107 LLKDAPPEELAAAVRTAAAGRTTLAPAVADRLMNRLRAPHAALTRRETEVLSLVAEGLSN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I+  L ++R TV +++A +  K    +R+ A+A A+   ++
Sbjct: 167 QGISARLQLTRATVKSHLAHVYAKLGVDSRTSAVAAALELGVI 209


>gi|253997167|ref|YP_003049231.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983846|gb|ACT48704.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8]
          Length = 263

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 25/199 (12%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL--DSIVSSDWPFDLVRCMALSEKDKY 98
            +   T  M  L +Y    H       +  ++ +  D  ++          + LS     
Sbjct: 78  TSTDLTNLMTDLFQYW--KHHSKAPITMNVDKGIFHDHQIAHHEA-----NINLSTMQSA 130

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           +              H + +       +     S T + +  +  L +L P     LR  
Sbjct: 131 H-------------IHGIKDLRGGHDCLYVFLSSETNNSSNYKKSLTMLLPFIDNSLRQL 177

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                 L   +       +   G    L+ RE+  + W+  GKT+ EI +IL IS  TV 
Sbjct: 178 EHLPEQLPEVEPEKTIDDNQVTGI---LSEREISIMEWVKAGKTNQEIGIILDISSFTVK 234

Query: 219 NYIASIMRKTATKTRSGAI 237
           N++  I++K     R+ A+
Sbjct: 235 NHMQRILKKLDVLNRAQAV 253


>gi|229012429|ref|ZP_04169604.1| Two-component protein Kinase [Bacillus mycoides DSM 2048]
 gi|228748788|gb|EEL98638.1| Two-component protein Kinase [Bacillus mycoides DSM 2048]
          Length = 592

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 86/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + Q        E    T  +       D L R++ +D        +  L +     +
Sbjct: 347 MNLQGQLSVYTKPEEGMLVTCTIPRQTEIRDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 406

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRP--TELFCPVFH 114
             +V       Q +D +     P  ++  + +   D          Q P    L    F 
Sbjct: 407 --VVGLAEDGNQAID-LCGRLQPHVVLMDLDMQHMDGVEATKKIKQQWPHIRVLIFTTFQ 463

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + +       + +   + +   +   + L+   G +I +    +I      Q    +
Sbjct: 464 DTEQALDSLRNGADGFLLKSIETLELANTIRLIHRGGTLIDQGMSHKIFEKFDEQIETPQ 523

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S        +ELT RE+E L  +++G     IA  L +S  TV NY +S   K   + + 
Sbjct: 524 SKATA----YELTTREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASSAYTKLGVRNKE 579

Query: 235 GAIAYAVRNNIV 246
            A+  A+   ++
Sbjct: 580 EAVQKALEIGVI 591


>gi|119717167|ref|YP_924132.1| two component LuxR family transcriptional regulator [Nocardioides
           sp. JS614]
 gi|119537828|gb|ABL82445.1| two component transcriptional regulator, LuxR family [Nocardioides
           sp. JS614]
          Length = 215

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 16/163 (9%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           +R   ++  +    + +R  +    +     +        D     Y S T     +   
Sbjct: 59  IRLPGMNGIEATRRIRERHPDTRVLIVTAYDDEEYVRGAFDVGAAGYLSKTAPGRELVEA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++      +  L+AA  A      +        LT RE   L  ++EG  +
Sbjct: 119 VRAVAGGNSVL------QPTLMAALLAKRSSPANT-------LTDRERAVLRLLAEGMHN 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  LGIS  TV  +   I  K    +R+ A+  A+  N++
Sbjct: 166 KQIASRLGISARTVERHCDRIYGKLGVTSRTEAVVRAISANLL 208


>gi|117919601|ref|YP_868793.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|117611933|gb|ABK47387.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 225

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 87/218 (39%), Gaps = 17/218 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+  ++        + +L      S  + V W     Q+    + +D    L+  + +  
Sbjct: 19  RVGLVEDQQLVRQGIASLIAI---SQHIEVSWQAENGQEALKRLQTDAVDVLLSDIRMPV 75

Query: 95  KDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLF 148
            D    + Q R  +   PV      + +           N +      + ++   +  + 
Sbjct: 76  LDGISLLKQLRAAQNSIPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLEAIETVA 135

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G +I    L ++   ++  A    ++D+       L+ RE E L +++ G ++ EIA 
Sbjct: 136 QGGHLIEPSVLEQMQQ-SSATAQSGPTHDL-------LSEREREILGFMAGGFSNKEIAN 187

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + ++  TV N++++I+ K   + R+ A+   ++ +++
Sbjct: 188 AVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI 225


>gi|311894358|dbj|BAJ26766.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 226

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 59/166 (35%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V +  P   V  M L + D      +  + +       L       A +D+        V
Sbjct: 49  VPALRPDVAVLDMRLPDGDGVTVCRELRSRMPRLACLMLTSFDDEEALLDSIMAGAAGYV 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +   G  L+     +     + + G      A M         +  +LT RE E L  I
Sbjct: 109 LKQISGTDLVTAIRTVASGQSMLDPGAATRLMARMRGESPAPAPEFPQLTDREREILALI 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EG T+ +I   + ++  TV N+I+ ++ K   + R  A   A + 
Sbjct: 169 GEGLTNRQIGERVYLAEKTVKNHISRLLAKLGVERRVQAAVIATQT 214


>gi|298247492|ref|ZP_06971297.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297550151|gb|EFH84017.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 886

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE+E L  I+EG ++ EIA  L +S  TV  +  +I  K +  +R+ A+A A R N
Sbjct: 825 PLSGRELEVLGLIAEGLSNSEIARRLVLSVGTVKVHTRNIYGKLSVSSRTQALAQATRLN 884

Query: 245 I 245
           +
Sbjct: 885 L 885


>gi|256380392|ref|YP_003104052.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924695|gb|ACU40206.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 225

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 4/172 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  + +      L     L    F      +         +     
Sbjct: 50  DVVLMDIRMPEVDGIEATRRIAADEDLAGVRILVLTTFEEDENVLRAVRAGAAGFLGKNV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECL 194
             A +   +  +     I+          L  +     +S         EL T RE E +
Sbjct: 110 GPAELLHAVRTVASGDSILSPAA---TKALVRHVLAHPESDPPQAPAPLELLTDREREVV 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              + G ++D IA  L +S  T   ++   M K  T+ R+  +  A R  +V
Sbjct: 167 VLAAHGLSNDRIAEHLHLSPLTAKTHVNRAMSKLNTRDRAQLVVLAYRTGLV 218


>gi|31790500|emb|CAD56676.1| putative regularory protein [Enterobacter sakazakii]
          Length = 216

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N    +T +  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYVTEEEGRVVEGLQGILRGECYFSQK-------LASYLITHSGNYRYNSSESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|331698102|ref|YP_004334341.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952791|gb|AEA26488.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 522

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +   +  D +  +   A ++    +++         LT REVE L  ++ G ++ +IA  
Sbjct: 423 RRGALDADAVEAVLSAAGHRVRRRRAWPA------GLTTREVEVLRLLARGLSNRDIAGR 476

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L +S  TV  ++  I  KT    R+ A  +A+R+ +
Sbjct: 477 LVLSPKTVGAHVEHIYAKTGANNRATAGLFAMRHGL 512


>gi|312197189|ref|YP_004017250.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228525|gb|ADP81380.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 285

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               + ++RDR+  I  L       +          F LT RE+E + +I+EG ++ E A
Sbjct: 187 HAGDQAVVRDRVASIRQLLQACYG-YMGEATARETAFGLTPRELEVVRFIAEGHSNAEAA 245

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +   TV +Y+ SIM+K     R+ A+  A R  ++
Sbjct: 246 KHLTVKPETVKSYLRSIMQKLGVHNRTAAVNVARRAGLL 284


>gi|225181065|ref|ZP_03734512.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168262|gb|EEG77066.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 207

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 10/156 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           VR   +        + +   ++   +  T  ++        N    Y      +  I   
Sbjct: 54  VRMPVMDGVLGTKLIKEHYQDIKVVILTTFKDDEYIAEAARNGAEGYLLKNQSLDSIVDS 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L ++     +  ++       +A     + K         F+LT RE E L  + EG ++
Sbjct: 114 LRVVGEGNTVFQKE-------VAGTLHAILKGEKKKDPASFQLTKREFEVLKLVGEGLSN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           DEIA  L ++  TV NYI++++ K   + R+    +
Sbjct: 167 DEIAQKLFLTPGTVRNYISNLLVKLNLRDRTQLAIF 202


>gi|156743203|ref|YP_001433332.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156234531|gb|ABU59314.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 222

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 87/223 (39%), Gaps = 17/223 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           S +  R++  D    +   +  L E  G   F++V  +    +++ +  ++  P  ++  
Sbjct: 2   STMPIRILLADDHRMFRQGLRELLERKG--GFIIVG-EASTGREVLAQAAALRPDIVLLD 58

Query: 90  MALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           + + E D    V ++  +    V       +   +++        R   L    A   I 
Sbjct: 59  IQMPEIDG-VAVARQLAQTHPDVKVIMLTMYRQDQHLFEAIKAGARAYLLKDADADELID 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           ++    +G   L         +     + F+   +    + +LT RE + LT ++EG  +
Sbjct: 118 VIERVHRGEAALDPT------VTLRVFDEFRRLSIDQDAE-QLTERERDILTLLAEGHDN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S  TV N ++ I +K     R+ A   AV+  ++
Sbjct: 171 RTIAQRLFLSEKTVGNRLSEIFQKLGVSNRTQAALVAVQRGLI 213


>gi|115376214|ref|ZP_01463456.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366787|gb|EAU65780.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 202

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I++G ++ E A +L +S+ T+  ++  I RK     R  A+   +R  
Sbjct: 139 PLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNRVEAVTEGIRKG 198

Query: 245 IV 246
           ++
Sbjct: 199 LI 200


>gi|297567226|ref|YP_003686198.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296851675|gb|ADH64690.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 212

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              I      E+ L       + +       ++  LT RE E L  +++G ++  IA   
Sbjct: 117 SEAIHAASRGEVRLHPEAAKRLMREVRTPEMRE-SLTPRETEILKLLAQGHSNKHIARET 175

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +   TV  +++SI+ K    +R+ A  +A++  +V
Sbjct: 176 KVEERTVKAHVSSILAKLGLSSRTQAALFALKEGLV 211


>gi|297563175|ref|YP_003682149.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847623|gb|ADH69643.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 225

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    F          +G  + +   + D  ++  GL  +   G  +  +    +     
Sbjct: 87  VILTTFSEDAYIARALSGGASGFVLKSGDPRQLVEGLRAVAEGGAYLSPEVARRVIDELD 146

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                         +   LT RE   L  + +G ++DEIA  L I+  TV  ++ SI+ +
Sbjct: 147 ASGGRLSRASAARERVGRLTERERGVLALVGQGCSNDEIARRLAIAPGTVKVHVGSILTR 206

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R  A   A    +V
Sbjct: 207 LDVRNRVQAAVVAYEAGLV 225


>gi|260426271|ref|ZP_05780250.1| transcriptional regulatory protein DegU [Citreicella sp. SE45]
 gi|260420763|gb|EEX14014.1| transcriptional regulatory protein DegU [Citreicella sp. SE45]
          Length = 214

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 16/163 (9%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAG-MDNRYCSLTFDVARIRIG 143
           +    LS       +L+R  E    V   H  PE I+   G     Y         ++  
Sbjct: 58  LNMPGLSGLSATEMILERRPETRILVLSMHDTPEYISTALGHGAMGYVLKDVPTDEVKRA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +       +               V  G   +LT RE   L  +++GK++
Sbjct: 118 IDAVMAGERYLCTGAEGAL-------------RPVMTGGREQLTNREQMVLLQLAQGKSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 165 KEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|257068341|ref|YP_003154596.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256559159|gb|ACU85006.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 225

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D+    L   V  +  G  LL P              L+A + A 
Sbjct: 97  VFAALRAGASGFLLKDSTPEELVHAVRVVADGQSLLAPP---------VTRALIADFVAR 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +S          LT RE+E L  ++ G  + EIA  L ++  TV  +++ I+ K   +
Sbjct: 148 PERSAGADASLAV-LTERELEVLRGVARGLANREIAAELVMAEQTVKTHVSRILGKLMLR 206

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A  + +V
Sbjct: 207 DRTQLVVAAYESGLV 221


>gi|261337245|ref|ZP_05965129.1| response regulator of two-component system [Bifidobacterium
           gallicum DSM 20093]
 gi|270277604|gb|EFA23458.1| response regulator of two-component system [Bifidobacterium
           gallicum DSM 20093]
          Length = 275

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY--- 168
           V   +    +     D    +L   +  +R G  ++ P     L +++   G + A    
Sbjct: 121 VMAAINAGASGFLLKDTEPETLLSSIRTVRDGNAIIAPTATKRLIEQMMHHGFVGAAPST 180

Query: 169 -QANMFKSYDVHWGKDFE----------------LTGREVECLTWISEGKTSDEIAVILG 211
             AN  ++      +                   LT RE E L  ++ G ++  IA  L 
Sbjct: 181 GAANNTQTQPSSSSRPQTGTAATDTPYTDPELALLTDREREVLIEVAHGLSNQVIASKLF 240

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  ++A I+ K   + R  A+ +A  N++V
Sbjct: 241 ISLPTVKTHVAHILSKIHARDRVQAVVFAYENHLV 275


>gi|121592864|ref|YP_984760.1| two component LuxR family transcriptional regulator [Acidovorax sp.
           JS42]
 gi|222109644|ref|YP_002551908.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|120604944|gb|ABM40684.1| two component transcriptional regulator, LuxR family [Acidovorax
           sp. JS42]
 gi|221729088|gb|ACM31908.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 223

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLL 147
            +   D    + +        +     +     A + N    Y   T D   +   +   
Sbjct: 62  GVRGVDAIAGLREASQGSRVLMLTVSEDGQDLAAALRNGAQGYLLKTIDGDLLAQAIRRA 121

Query: 148 FPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                ++  + + ++     +  A   +           L+ RE + L  I+ G ++ EI
Sbjct: 122 ARGEPVVSPEMMGKLVAAFQSQGAPTPEPLPEEEEPASVLSPREEDVLREIARGLSNKEI 181

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV-RNNI 245
           A  L I+  TV  ++  I+RK    +R  A  YA  R+ +
Sbjct: 182 ARALDIAETTVKIHVQHILRKLGLSSRVQAAVYASDRHRL 221


>gi|296269744|ref|YP_003652376.1| LuxR family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296092531|gb|ADG88483.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM
           43833]
          Length = 228

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTSDE 205
              ++R    E  + +   A +F S D    +       EL+ RE E L  +++G ++ E
Sbjct: 124 EDALIRVARSETPMPSQIVAELFDSADRMLRRGTHPRYVELSAREREALQLLADGLSNKE 183

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS +     + +I+ K     R+ A   A+R+ +V
Sbjct: 184 IAQRLYISVHGAKRLVGNILLKLNCPNRTQAAVIAMRHGLV 224


>gi|295689487|ref|YP_003593180.1| LuxR family two component transcriptional regulator [Caulobacter
           segnis ATCC 21756]
 gi|295431390|gb|ADG10562.1| two component transcriptional regulator, LuxR family [Caulobacter
           segnis ATCC 21756]
          Length = 207

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE------IGLLAA--YQANMFKSYDV 178
           D R   LT     +R    L       +L+  L          +L    Y          
Sbjct: 78  DARIIVLTTYAGDVRALSALRAGASGYLLKSSLRRELIDTIRAVLGGQRYLHPEVAHDIA 137

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+ RE++ L  ++ G  + EIA  L +S +TV  ++ SI  K     R+ A+ 
Sbjct: 138 VNAIAEPLSEREIDVLKRVANGAANKEIARALSLSEDTVKGHMRSIFSKLDVTDRTQAVT 197

Query: 239 YAVRNNIV 246
            A R  I+
Sbjct: 198 VAHRRGII 205


>gi|119510573|ref|ZP_01629703.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena
           CCY9414]
 gi|119464734|gb|EAW45641.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena
           CCY9414]
          Length = 87

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 41/64 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE++ +  ++ G T+ +IAV L IS+ TV+N+I++I+ KT T+ R   + +A++
Sbjct: 9   PVSLSDRELQIIDLVAAGLTNQDIAVKLEISKRTVDNHISNILTKTQTENRVALVRWALQ 68

Query: 243 NNIV 246
              +
Sbjct: 69  WGKI 72


>gi|315295459|gb|EFU54787.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 153-1]
          Length = 230

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 152 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A    ++  I+
Sbjct: 210 SRVAATILFLQQRII 224


>gi|256378098|ref|YP_003101758.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922401|gb|ACU37912.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 225

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 2/156 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +   +   P  L    F T  +         + +             + ++   
Sbjct: 68  GVEATRRLSALPDSPKVLVLTTFDTDEDAFAALRAGASGFLLKNSPPEDTLNAIRVIAAG 127

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++         LL  +   +  +      +   LT RE E L  ++ G ++ E+A  +
Sbjct: 128 DAVVAPRVTRR--LLDRFAGRLDTAPAPADDRLDVLTEREREVLVLVARGLSNVELAERM 185

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  TV  ++  ++ K   + R  A+  A    +V
Sbjct: 186 HVAEATVKTHLGRVLTKLGLRDRVQAVVLAYELGLV 221


>gi|111020362|ref|YP_703334.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110819892|gb|ABG95176.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1094

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 138  ARIRIGLMLLFPKGRIILRDRLWEIGLLA-AYQANMFKSYDVHWGKDFELTGREVECLTW 196
             R R  L     +    + +RL  +  +  A Q    K          +LT RE E    
Sbjct: 980  QRTRQLLGDSAFEKESRVGERLEHLASIEFALQKRTSKPAPATPAAKVKLTPREKEVGKL 1039

Query: 197  ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++EG T+ EIA  L IS  T   ++  I+ KT  ++R+   A+  R
Sbjct: 1040 VAEGLTNKEIAERLVISPRTAEGHVDRILTKTGHRSRAQLAAWIAR 1085


>gi|29832167|ref|NP_826801.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609285|dbj|BAC73336.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 239

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 10/170 (5%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           P  +V  + +   D       + + P ++   +  T  ++      +             
Sbjct: 50  PDVVVMDIRMPGTDGIEATRRITEAPGDVRILMLTTFDDDDYVYGALRAGASGFLV---- 105

Query: 140 IRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTW 196
             +GL  +    R++   D L   G+      +   S +    +    E+T RE E LT 
Sbjct: 106 KDMGLDDILAAVRVVAAGDALIAPGVTRRLIQDFVASPEQPRARRELTEITEREREVLTL 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  G T+ EIA  L IS  T   Y+  ++ K   + R   +  A    +V
Sbjct: 166 VGTGLTNTEIAERLFISVATAKTYLTRLLAKLDARDRVQLVIIAYEAGLV 215


>gi|15615637|ref|NP_243941.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus halodurans C-125]
 gi|10175697|dbj|BAB06794.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus halodurans C-125]
          Length = 74

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 35/67 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +G    LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+
Sbjct: 4   AEFGPKPLLTKREREVFELLVQDKTTKEIAEQLFISEKTVRNHISNTMQKLGVKGRSQAV 63

Query: 238 AYAVRNN 244
              +R  
Sbjct: 64  IELIRLG 70


>gi|150019634|ref|YP_001311888.1| two component LuxR family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906099|gb|ABR36932.1| two component transcriptional regulator, LuxR family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 218

 Score = 88.1 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWG 181
            +   + Y         + + +  +     II +D L  + L L        K      G
Sbjct: 94  ISNGADGYILKDISTEELILSIKSISLGLGIITKDILSPMILNLRKENKKAKKKIIDING 153

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  LT RE++ ++ I +GK + EIA  L I+  TV N I  I+ K + + R+    YAV
Sbjct: 154 INISLTERELKIVSMIVDGKDNKEIASSLFIAEGTVKNIITEIISKLSLRDRTQLAVYAV 213

Query: 242 RNNIV 246
           +N +V
Sbjct: 214 KNGLV 218


>gi|332669029|ref|YP_004452037.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338067|gb|AEE44650.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484]
          Length = 965

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  +++G ++ +I   L IS  TV+ +I++++ K     R+ A++ A +  +
Sbjct: 901 LTAREVEVLGLVAQGLSNRQIGEKLFISGKTVSVHISNLLAKLGVSGRAEAVSVAHQRGL 960

Query: 246 V 246
           +
Sbjct: 961 I 961


>gi|328883448|emb|CCA56687.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 220

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 1/123 (0%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++  G+ ++   G  +L   + +  +    +A           + 
Sbjct: 95  RAGASGFLLKDASARQLADGVRVVA-AGEALLAPTVTKRLITEFAKAPGSSPRPPAMAQI 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K A + R+ A  +A   
Sbjct: 154 GELTERETEVLVLIAQGLSNAEIADHLVVAESTIKTHVSRILVKLALRDRTQAAVFAYEA 213

Query: 244 NIV 246
            +V
Sbjct: 214 GLV 216


>gi|300703751|ref|YP_003745353.1| transcriptional regulator protein, luxr family [Ralstonia
           solanacearum CFBP2957]
 gi|299071414|emb|CBJ42733.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CFBP2957]
          Length = 252

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 24/189 (12%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D IV+ D+P + +  +          +++R      PV+    +   P A +D  + +
Sbjct: 52  LMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---DAAAPAAEIDRGWLA 108

Query: 133 ------LTFDVARI----------RIGLMLLFPKGRIILRDRLWEIG-----LLAAYQAN 171
                 L   VA                  L       L   L ++       L    A+
Sbjct: 109 KFIAHDLRNAVADGVYDEGHCIGTYFSFHRLASVNVPDLASVLRDLTPVLHRTLMRAVAD 168

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K++         L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT   
Sbjct: 169 TEKTWHSALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 228

Query: 232 TRSGAIAYA 240
            R G    A
Sbjct: 229 NRVGVAVLA 237


>gi|302530526|ref|ZP_07282868.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302439421|gb|EFL11237.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 207

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REVE L  +++G+T+ EI   L I   TV  ++  +  K     R+ A+  A+  +
Sbjct: 145 PLSAREVEVLRLVAKGRTNAEIGRELHIGEATVKTHLLRVFSKLGVSDRTAAVTTALDRH 204

Query: 245 IV 246
           ++
Sbjct: 205 LL 206


>gi|229492601|ref|ZP_04386404.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
 gi|229320587|gb|EEN86405.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
          Length = 358

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 32/68 (47%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H      LT RE+E LT+++ G ++ EI   L  S  TV  ++  I+ K    +R  A  
Sbjct: 287 HEKAPRNLTARELEVLTYLARGLSNAEIGRELHASHRTVATHVERILDKLDCHSRVAAAG 346

Query: 239 YAVRNNIV 246
            A    IV
Sbjct: 347 IATAEGIV 354


>gi|241203502|ref|YP_002974598.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857392|gb|ACS55059.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 65

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E + W++ GKT+ EI  ILGIS  TVN +IA+   +      +  +A A+RN I+
Sbjct: 5   TPRETEVIRWMAAGKTAAEIGTILGISHITVNTHIANAKARLGVFKDTALVAAALRNGII 64


>gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 237

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 69/186 (37%), Gaps = 10/186 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +Q L  +V +D     +    L  + +    L     +F        +         + Y
Sbjct: 51  QQLLPDVVITDVMMPRLDGYGLLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 110

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMF------KSYDVHW 180
               FD   +   +  +  + + +L++       ++G +A     +       ++     
Sbjct: 111 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADADMGQIAKQITEIRSLLAQAEALPAQE 170

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                 T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA
Sbjct: 171 PVQHTFTPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYA 230

Query: 241 VRNNIV 246
           +++ +V
Sbjct: 231 LQHRLV 236


>gi|133757303|ref|YP_001096222.1| hypothetical protein pLEW279a_p23 [Corynebacterium sp. L2-79-05]
 gi|110084187|gb|ABG49341.1| hypothetical protein [Corynebacterium sp. L2-79-05]
          Length = 221

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 2/137 (1%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           LF   F              + +   + D  ++  G+  +  +G            LL +
Sbjct: 85  LFVTTFGEDDYIAEAIRLDADGFVLKSGDPRQLIAGVHAVAGRGAFFSPSVARR--LLDS 142

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             +  +  Y     +   LT RE E L  +S+G+T+ EIA  L ++  TV  ++++I+RK
Sbjct: 143 GVSTTYTQYASAVERFERLTAREREILIRLSQGETNAEIAKALHLAPGTVKVHVSAILRK 202

Query: 228 TATKTRSGAIAYAVRNN 244
           T  + R  A   A+R  
Sbjct: 203 TEARNRVEAALIALRAG 219


>gi|308067163|ref|YP_003868768.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305856442|gb|ADM68230.1| Transcriptional regulatory protein degU (Protease production
           enhancer protein) [Paenibacillus polymyxa E681]
          Length = 217

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 13/135 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP-KGRIILRDRLWEIGLLAAYQAN 171
           F  +    +        +  L   +  +  G   L+P   + ++ + L +I         
Sbjct: 92  FRAIQAGASGYILKSAPHEELLAAIQSVAEGSAYLYPNATKRLMSEYLDKIKQEGI---- 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    G    L+ RE E L+W+++G  + EIA  L IS  TV ++ +++M K + K
Sbjct: 148 --------AGPYESLSEREKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLSLK 199

Query: 232 TRSGAIAYAVRNNIV 246
           TR   + +A++  ++
Sbjct: 200 TRPELVKFALKKGLL 214


>gi|227501858|ref|ZP_03931907.1| possible response regulator [Corynebacterium accolens ATCC 49725]
 gi|227077352|gb|EEI15315.1| possible response regulator [Corynebacterium accolens ATCC 49725]
          Length = 223

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L+   A+   +          LT RE+E L  ++ G ++ +I   L +S  TV +++ 
Sbjct: 142 SALSPIVADRLMTR--VRTPRTSLTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLV 199

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K   ++R+ A+A A    ++
Sbjct: 200 HIYDKLGVRSRTSAVAAAREQGVL 223


>gi|213965869|ref|ZP_03394060.1| two-component system response regulator [Corynebacterium amycolatum
           SK46]
 gi|213951447|gb|EEB62838.1| two-component system response regulator [Corynebacterium amycolatum
           SK46]
          Length = 227

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              +  LT RE+E L  ++ G ++ +IA  L ++  TV +++  I  K    +R+ A+A 
Sbjct: 159 RNPNTALTPRELEVLELVARGMSNRKIAEQLVLTEATVKSHLVHIFTKLDVSSRTAAVAR 218

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 219 AQELGML 225


>gi|184201824|ref|YP_001856031.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183582054|dbj|BAG30525.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 299

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    I EG ++ EI   L +S  TV  +++ I+ K   + R  A+  A    +
Sbjct: 236 LTAREREVFELIGEGCSNGEIMQRLFLSEPTVKTHVSHILSKLDARDRVQAVVIAYETGV 295

Query: 246 V 246
           V
Sbjct: 296 V 296


>gi|134103787|ref|YP_001109448.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005755|ref|ZP_06563728.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916410|emb|CAM06523.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 224

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           + +       + Y   +  V  +   +        +        +  L   +        
Sbjct: 92  DVLEAVKAGASGYLVKSASVDELVDAVQRTAAGDAVFTAG----LAGLVLGEYRRMAVTP 147

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +  +LT RE E L  +++G T+ +IA  L IS  TV N++ S +RK     R    
Sbjct: 148 DSGDRAPQLTDRETEVLRQVAKGLTARQIANKLVISHRTVENHVQSTLRKLQLHNRVELA 207

Query: 238 AYAVRNNI 245
            YA+ + +
Sbjct: 208 RYAIEHGL 215


>gi|89274998|gb|ABD65961.1| two-component system response regulator [Streptomyces fungicidicus]
          Length = 223

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D     L   V     G  L+ P   + L   L E   +    A 
Sbjct: 94  VYGALRGGAAGFVLKDAGPALLIEAVRAAYNGEALVSPSVTLRLLKHLNESQAMPRGGA- 152

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +  EL+GR +E +  I+ G+T+ EIA  L IS +TV ++++ I  K   +
Sbjct: 153 ---------ARSSELSGRALEVVRAIARGRTNQEIAAELFISLSTVKSHLSGIQTKLGVR 203

Query: 232 TRSGAIAYAVRNNIV 246
            R+    +A  N +V
Sbjct: 204 NRTEIAVWAWENRVV 218


>gi|83311866|ref|YP_422130.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82946707|dbj|BAE51571.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 211

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 59/170 (34%), Gaps = 1/170 (0%)

Query: 77  IVSSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +V  +  FD+ +  +++   D +  +              +  +  P             
Sbjct: 42  LVRGNADFDVALLDLSMPGMDGFSAIGAVRRSAPDIYLVVVSASEEPQTVRKALDSGAHG 101

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + +      ++     ++  D      ++    A               LT R+ + L 
Sbjct: 102 YICKSAGSASMMAGIRSVLEGDTFVSPHIVVPDTAAPSIGDINGEQLQSLLTPRQRDVLG 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + +GK++ EIA  L ++  TV  ++ +I+R    + R+ A   A +  +
Sbjct: 162 MLRQGKSNKEIARDLSLAEITVKLHVTAILRALGCENRTQAAILAAKMGV 211


>gi|251793298|ref|YP_003008026.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534693|gb|ACS97939.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           aphrophilus NJ8700]
          Length = 209

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 17/200 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           L++       + +  +V  +  F++V       +     +   P   +       L    
Sbjct: 8   LIIDDHPLMRRGIKQLVELEEGFEVVGGAGNGSEGINLALQTSPDLIILDLNMKGLSGLD 67

Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--------RLWEIG----L 164
           T       G+D R   LT   A+  I  ++       +L+D        +L  I     +
Sbjct: 68  TLKALRAEGVDARIVILTVSDAKSDIFTLIDAGADGYLLKDTEPDTLLSQLKRIAQGEVI 127

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+    N+           + LT RE++ L  I+ G ++ +IA  L IS  TV  +I ++
Sbjct: 128 LSDSIKNLLIERQSSQEPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNL 187

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           +RK    +R  A      + 
Sbjct: 188 LRKLNVHSRVAATVLYFEHK 207


>gi|217979469|ref|YP_002363616.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
 gi|217504845|gb|ACK52254.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
          Length = 238

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVH-WGKDFEL---TGREVECLTWISEGKTSDEIAVILG 211
            + + ++  +A Y     ++ D+H  G   +L   T RE+E L  +++GK   EIA+++ 
Sbjct: 145 HELMIDLAHIAHYVHK--RACDIHGEGHTIDLSTITRREIEALALVAQGKKPGEIAMLMR 202

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS +TV  ++ S   K     R  A A A+R  ++
Sbjct: 203 ISNDTVKAHLDSARDKLQALNRVHAAAKALRAGLI 237


>gi|254421396|ref|ZP_05035114.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188885|gb|EDX83849.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 242

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 6/177 (3%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPP 123
           R  +       +++S  +P   V  +   + D+     +    + +        E     
Sbjct: 60  RMPVMDGVATTAMISKHYPAIKVLVLTTFDDDQLIAQSMAVGAQGYLLKDTPSEELAAAI 119

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             +   Y      + +  IG +        + R       L  + +AN            
Sbjct: 120 RSVAKGYSQFGPGIVQKMIGALPNIAAP-PVSRSTRASSALDTSLEANKVDLPPEVAA-- 176

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             LT RE E L  I  G ++ EIA  L +S  TV N++ S++ +   + R+ A   A
Sbjct: 177 --LTPRETEVLVCIGNGASNKEIAQQLFLSEGTVKNHVTSVLSRLGLRDRTQAALLA 231


>gi|118472043|ref|YP_890213.1| two-component regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118173330|gb|ABK74226.1| two-component regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 305

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +       +       +    L   + ++  G  L  P+   IL   L  +  LA+ +  
Sbjct: 176 IVACAEAGVAGYHLRSDSLKDLLVLIHKVAAGESLCSPRVSAIL---LRRLSTLASQRQP 232

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +         K+  LT RE++ L  +  G ++ +IA  L I+ +TV N++ S++ K    
Sbjct: 233 V--------HKELVLTSREIQILRLLEMGLSNRDIAEQLCIAVHTVKNHVHSLLAKLGVS 284

Query: 232 TRSGAIAYA 240
           TR+ A A A
Sbjct: 285 TRAQAAALA 293


>gi|302561891|ref|ZP_07314233.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302479509|gb|EFL42602.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V+ D    L+  +  +           P  L    F              + +     
Sbjct: 50  DVVAMDVRMPLLDGIEATRALLRSVAAP-PKILVVTTFENDEYVYGALRAGADGFLLKRA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A I   + L+     ++    +  +   A Y             +   LTGRE E L 
Sbjct: 109 RPAEIVHAVRLVAEGESLLFPASVRRLA--AEYGDGDGNRAARAALERARLTGREGEVLR 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G T+ EIA  L +   TV +++++++ K   + R+ A+  A  +  V
Sbjct: 167 LMARGLTNAEIAAKLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217


>gi|228925153|ref|ZP_04088263.1| Response regulator receiver [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228834492|gb|EEM80021.1| Response regulator receiver [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 537

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L    F              + Y   + D   +   + L++  G +I    L+     
Sbjct: 399 RVLILSTFQNTERAKEIIRNGADGYLLKSIDSRELAESIRLVYRGGTMINHG-LFHRMWE 457

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +   F+S     GK++ LT RE+E L  +S+G     IA  L +S  TV NY +++ 
Sbjct: 458 ENEEKGSFESRSD--GKEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLY 515

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   K R  A+  A    ++
Sbjct: 516 EKLGVKNREEAVQKAKDKGLL 536


>gi|229820103|ref|YP_002881629.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566016|gb|ACQ79867.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 208

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 8/181 (4%)

Query: 66  WDLFQEQKLDSIVSSDWP-FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE------ 118
            D+        +V+      D VR   L+  +     LQ P      V   L +      
Sbjct: 19  ADMVDAAGDLRVVAEAGSVADAVRRGTLTRPEVALVDLQLPDGTGIEVIRRLADESSDTR 78

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +   +  D+   +   +V   R  ++       I+   R    G +   + ++ +    
Sbjct: 79  CVVLTSFDDDDALASAIEVG-ARAYVLKTVRGAEIVDVVRAVAAGRVLLDERSLTRRRAA 137

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H      LT  E   L  ++EG T+ +IA  LG++  TV N++ S++ K   + R+ A+A
Sbjct: 138 HEDPTSALTPSERRVLELVAEGLTNRDIAERLGVAEKTVKNHVTSMLSKMGLQRRTQAVA 197

Query: 239 Y 239
           +
Sbjct: 198 W 198


>gi|227497046|ref|ZP_03927297.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833464|gb|EEH65847.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 222

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               +     A   +S          L+ RE E L  ++ G ++ +IA  L IS  TV  
Sbjct: 133 MSPAVTTRILAATRRSAAAPSDTAPALSPREREVLAAVARGMSNAQIARELLISEATVKT 192

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  +  K    +R+GA+  A+R  ++
Sbjct: 193 HLLRVNNKLGVDSRTGAVMEALRQGLI 219


>gi|146308673|ref|YP_001189138.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
 gi|145576874|gb|ABP86406.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
          Length = 914

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 10/113 (8%)

Query: 144 LMLLFPKGRIILRDRLW-------EIGLLAAYQANMFKSYDVHW---GKDFELTGREVEC 193
            + L       LR+RL           LLA   A      DV     G   +L+GRE+  
Sbjct: 801 FVELLEHQPQWLRERLQLRPACPQRDALLAQLPAAREADEDVAPEESGPTEKLSGREMAV 860

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I+ G ++ EI+  L IS +TV  +   I  K   + R+ A+A A    ++
Sbjct: 861 LQLIARGCSNQEISERLFISLHTVKTHARHINSKLGVERRTQAVARAKGLGLL 913


>gi|148652475|ref|YP_001279568.1| two component LuxR family transcriptional regulator [Psychrobacter
           sp. PRwf-1]
 gi|148571559|gb|ABQ93618.1| two component transcriptional regulator, LuxR family [Psychrobacter
           sp. PRwf-1]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 18/179 (10%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L Q Q    I+  + P        LS  D    + ++  +    +F            + 
Sbjct: 53  LAQNQVDLVILDQNMP-------GLSGLDTAEQIREQGHQAKVLMFTVSDSGDDIHNALK 105

Query: 128 ---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y        ++ + +       R  LR  L     LAA  A   ++ ++      
Sbjct: 106 LGVNGYLLKDMQPEQVALDI-------RKALRGELVVSSRLAAVLAQALRTPNLD-DIVS 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE++ +  I++G ++  I   LGIS +TV  ++  I+ KT  +TR     +AV N
Sbjct: 158 NLTSRELQVVKMIAKGHSNKMIGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAVNN 216


>gi|16764498|ref|NP_460113.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62179660|ref|YP_216077.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161614644|ref|YP_001588609.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167553080|ref|ZP_02346830.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993996|ref|ZP_02575088.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168234058|ref|ZP_02659116.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237217|ref|ZP_02662275.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168822574|ref|ZP_02834574.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194469443|ref|ZP_03075427.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194737293|ref|YP_002114139.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249466|ref|YP_002146903.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262382|ref|ZP_03162456.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198243879|ref|YP_002215996.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200389724|ref|ZP_03216335.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204930806|ref|ZP_03221679.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|207857350|ref|YP_002244001.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224584353|ref|YP_002638151.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238911038|ref|ZP_04654875.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|6014730|sp|O54294|CSGD_SALTY RecName: Full=Probable csgAB operon transcriptional regulatory
           protein
 gi|2739237|emb|CAA05315.1| CsgD protein [Salmonella typhimurium]
 gi|16419657|gb|AAL20072.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62127293|gb|AAX64996.1| putative transcriptional regulator (LuxR/UhpA family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364008|gb|ABX67776.1| hypothetical protein SPAB_02394 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455807|gb|EDX44646.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194712795|gb|ACF92016.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197213169|gb|ACH50566.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240637|gb|EDY23257.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197289893|gb|EDY29254.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938395|gb|ACH75728.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602169|gb|EDZ00715.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320265|gb|EDZ05469.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205322437|gb|EDZ10276.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328037|gb|EDZ14801.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205331948|gb|EDZ18712.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205341044|gb|EDZ27808.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|206709153|emb|CAR33486.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224468880|gb|ACN46710.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246354|emb|CBG24163.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992909|gb|ACY87794.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157683|emb|CBW17175.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912129|dbj|BAJ36103.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320086418|emb|CBY96191.1| Transcriptional regulatory protein uhpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223757|gb|EFX48820.1| Transcriptional regulator CsgD for 2nd curli operon [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322616512|gb|EFY13421.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619764|gb|EFY16639.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622541|gb|EFY19386.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629692|gb|EFY26467.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632588|gb|EFY29334.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636917|gb|EFY33620.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641545|gb|EFY38183.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644846|gb|EFY41380.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649699|gb|EFY46129.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653990|gb|EFY50313.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658522|gb|EFY54784.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663380|gb|EFY59582.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670114|gb|EFY66254.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674821|gb|EFY70912.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676708|gb|EFY72775.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682630|gb|EFY78649.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686312|gb|EFY82294.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322714130|gb|EFZ05701.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323129411|gb|ADX16841.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323195731|gb|EFZ80907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199879|gb|EFZ84968.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203139|gb|EFZ88169.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209142|gb|EFZ94079.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209647|gb|EFZ94576.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217898|gb|EGA02613.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222185|gb|EGA06569.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224956|gb|EGA09214.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229700|gb|EGA13823.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323232925|gb|EGA17021.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240660|gb|EGA24702.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242973|gb|EGA26994.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247665|gb|EGA31610.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252666|gb|EGA36504.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255707|gb|EGA39459.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261744|gb|EGA45316.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266904|gb|EGA50389.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269946|gb|EGA53395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326623745|gb|EGE30090.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628199|gb|EGE34542.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332988033|gb|AEF07016.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
            NTV  ++ ++ +K A K R+ A+++A
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|110637079|ref|YP_677286.1| fimbrial Z protein; signal transducer [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279760|gb|ABG57946.1| fimbrial Z protein; probable signal transducer [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 212

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 13/210 (6%)

Query: 49  MYALTEYVGASHFLL---VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP 105
           M  +  Y+   ++L+   V+  L Q  +++ +  S+   DL   +  S+ D     L   
Sbjct: 1   MDKIKVYIVDDYYLIREGVKKSLKQNSEIEIVGESNSLSDLATSIKTSQPDVLIFELNLC 60

Query: 106 TELFCPVFHTLPE-----NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
            +    +   L +          +  D     L   V     G +        +L     
Sbjct: 61  QQPIRDLIENLKKVNARVKFLIISDCDCE-LPLVMAVRAGVTGFVRKNVSKEELLHAVQQ 119

Query: 161 EIGLLAAYQANM----FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                  Y +++     K +  +   D   + RE+E L +I +G+++++IA IL IS  T
Sbjct: 120 VYTNKEYYVSDVTQVLLKGFLANQTSDSIFSDRELEVLRYICKGRSNEQIADILFISEKT 179

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  +  +IM+K   K  +  I +A+ N IV
Sbjct: 180 IATHRRNIMKKAGVKKSTELIVWALDNKIV 209


>gi|331694132|ref|YP_004330371.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326948821|gb|AEA22518.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 524

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +LAA    + +   +  G    L+ RE + L  ++ G ++  IA  L ++  TV +++ 
Sbjct: 439 AVLAAAGHRVRRRPALPAG----LSPREAQVLGLVARGLSNRAIAAELSLAPRTVGSHVE 494

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            +  K    TR  A  +A+R+ +V
Sbjct: 495 HVYTKIGVSTRGAAAMFAMRHGLV 518


>gi|269958046|ref|YP_003327835.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269306727|gb|ACZ32277.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 970

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A                   LT RE E LT ++EG ++ +I   L IS  TV+ ++++++
Sbjct: 888 ARRARVALPGTPRRHESVASLTDREEEVLTLVAEGLSNRQIGERLYISTKTVSVHVSNVL 947

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R+ A+  A R  ++
Sbjct: 948 AKLGVSGRTEAVDVAHRKGLL 968


>gi|225175373|ref|ZP_03729368.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169125|gb|EEG77924.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 378

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I+ G ++ EI+  L +S  TV  + ++I  K   K R+ AIA A + N
Sbjct: 315 ELSTRELEILDLINRGLSNQEISEKLFLSVGTVKWHTSNIYGKLGVKGRTQAIAMARKLN 374

Query: 245 IV 246
           ++
Sbjct: 375 ML 376


>gi|70725661|ref|YP_252575.1| hypothetical protein SH0660 [Staphylococcus haemolyticus JCSC1435]
 gi|123748665|sp|Q4L8Q6|NREC_STAHJ RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|68446385|dbj|BAE03969.1| nreC [Staphylococcus haemolyticus JCSC1435]
          Length = 217

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 25/184 (13%)

Query: 78  VSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPV----------FHTLPENITPP 123
           V    P  L+  +++   +        + +   E    +          FH L       
Sbjct: 42  VMEHKPDVLIMDLSMPPGESGLIATSKISESFPETKILILTMYDDEEYLFHVLRNGAKGY 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              +     L   V  +  G   +           +     L     N   S DV     
Sbjct: 102 ILKNAPDEQLLLAVRTVYKGETYVD----------MKLTTSLVNEFVNHKHSDDVSTNDP 151

Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           F+ L+ RE+E L  I++G  + +IA  L +S  TV  +   IM K   K++   + YA++
Sbjct: 152 FKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLDLKSKPELVEYALK 211

Query: 243 NNIV 246
             ++
Sbjct: 212 KKLL 215


>gi|312961179|ref|ZP_07775684.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284837|gb|EFQ63413.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 217

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 14/179 (7%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR- 129
           EQ L  IV  D    ++  +  +   +     QR  +L   +F          A M+   
Sbjct: 47  EQLLPDIVILDIRMPVLNGLGAARLLQ-----QRLPDLKVVMFTMDDSPDHLEAAMNAGA 101

Query: 130 --YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   L  +   G  +         + A     M +           LT
Sbjct: 102 VGYLLKDASRDEVIQALQQVAAGGEALNT------AVSARLLRRMTERQASGAAPAEHLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++  I   LGI+  T   ++  ++ K     R+ A    +   +V
Sbjct: 156 PRERQVLGLVANGMSNRAIGEQLGITTGTAKAHVERVIGKLGAADRTQAAVRGIALGLV 214


>gi|302532515|ref|ZP_07284857.1| two-component system regulator [Streptomyces sp. C]
 gi|302441410|gb|EFL13226.1| two-component system regulator [Streptomyces sp. C]
          Length = 259

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 3/160 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  +  +E+        R   +    F              + +        R+   +  
Sbjct: 93  IDGITAAERILAGQQGTRSRIIVLTTFDVDEYVYAALRAGASGFLLKDTPPERLISAVTT 152

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     +        +    + +       D    +   LT RE + L  ++ G  +DEI
Sbjct: 153 IAGGDMLFAPAVTRRLIEAYSARTEGPGGDDRTLSR---LTNREQDVLRLVARGLGNDEI 209

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L ++  TV  ++   M K   ++R+ A+A A    +V
Sbjct: 210 AAELVVTEATVKTHLHRTMTKLGLRSRAQAVAVAYEAGLV 249


>gi|297155312|gb|ADI05024.1| response regulator [Streptomyces bingchenggensis BCW-1]
          Length = 164

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 40/85 (47%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           IG L +    +        G    LT RE + L  ++EG  + EIAV L  S  TV N I
Sbjct: 79  IGQLVSQVGALRPGAVGRLGVPLGLTPRETDVLRLVAEGMGTGEIAVKLAYSERTVKNVI 138

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             +  +   + R+ A+AYA+R   +
Sbjct: 139 QGLTTRLGLRNRAHAVAYALREGYI 163


>gi|291287073|ref|YP_003503889.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884233|gb|ADD67933.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 193

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT RE E L  I+ GKTS EI  +L IS+NTV+ +   +++K      +  + YA 
Sbjct: 129 RNGSLTSRECEILKLIASGKTSREIGEMLCISKNTVDTHRNKMLQKLNLANSASLVHYAF 188

Query: 242 RNNIV 246
            + +V
Sbjct: 189 VSGLV 193


>gi|26991331|ref|NP_746756.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24986392|gb|AAN70220.1|AE016661_6 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
          Length = 279

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 13/180 (7%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC-------S 132
           S++P + +      +  K             PV  T       P   +           +
Sbjct: 100 SNYPSEWIERYQRDDFYKQDPAANLSHSSTMPVLWTDELYKEAPQFREMACLYGLRHGWT 159

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWG----KDFEL 186
            +    +     + +      I    L++      +  +   +   + H         ++
Sbjct: 160 QSLHDQQHNESQISVARPNGPIDEVELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPKM 219

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A     +
Sbjct: 220 SERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 279


>gi|326382365|ref|ZP_08204057.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199095|gb|EGD56277.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 215

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 1/160 (0%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V  M L+     ++ ++   EL   V    P+ +               D   +   L+ 
Sbjct: 54  VILMDLNLGSAEHSGVEIIAELQRGVDGPAPKILVLTTYQTESDILRALDAGALG-YLLK 112

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
             P   ++   R    G      A               +T REVE L  ++ G  + E+
Sbjct: 113 DAPAEELLSAIRATARGETVLSPAIAATLVRRSSQPGPTITEREVEVLELLARGMGNKEL 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  + IS  TV  ++A +  K    TR+GA+A A+   I+
Sbjct: 173 AKTMFISEGTVKAHLAHVYGKLGVDTRAGAVAAAIERRII 212


>gi|310821776|ref|YP_003954134.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309394848|gb|ADO72307.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 254

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I++G ++ E A +L +S+ T+  ++  I RK     R  A+   +R  
Sbjct: 191 PLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNRVEAVTEGIRKG 250

Query: 245 IV 246
           ++
Sbjct: 251 LI 252


>gi|300214009|gb|ADJ78425.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 218

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 21/229 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D+Q+    S L    D    +  +D        + ++ E       + +R         
Sbjct: 7   ADDQKLIRES-LKIVLDTYQDIQVIDTVGDGKQVLESIKEQEPDVILMDIRMPNMDGTVS 65

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
             +V   +P   +  +   + D +             +F  L    +        Y    
Sbjct: 66  TKLVKQSYPHIKIIILTTFDDDDF-------------IFSALKYGAS-------GYILKG 105

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  ++  G +I  +   ++  L +  A      DV       +T  E   +
Sbjct: 106 VSPTELHDAITTVYNGGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVI 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +  G ++ EI+  L +S  TV N+++ I+ K   + R+    +AV+N
Sbjct: 166 YQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 214


>gi|297622974|ref|YP_003704408.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164154|gb|ADI13865.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 386

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 40/74 (54%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +S  V       LT RE + L  I++G ++  I+  LG++  TV NY+ASI +K   +
Sbjct: 312 QLRSGSVALSGTEALTPREQQVLGRIAKGLSNSAISQELGLAPQTVRNYVASIYQKLGVR 371

Query: 232 TRSGAIAYAVRNNI 245
           +R+ A+ +A    +
Sbjct: 372 SRAEAVVWARERGL 385


>gi|227508387|ref|ZP_03938436.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227192037|gb|EEI72104.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D H      L+ RE E    ++ G T+ EIA  L IS  TV  + ASIM K +  +R  
Sbjct: 147 VDAHLQGYRSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPE 206

Query: 236 AIAYAVRNNIV 246
            + YAV ++++
Sbjct: 207 LVRYAVHHHLI 217


>gi|229822019|ref|YP_002883545.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567932|gb|ACQ81783.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 211

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +L+   A       +       L+ RE+E L  ++ G T+ + A  L IS  TV  ++ 
Sbjct: 123 AVLSPAVATRLMG-QMRQPAPEPLSRRELEVLELVARGSTNRDAAKHLFISEATVKTHLL 181

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
               K     R+ A+A A     +
Sbjct: 182 HAYAKLGVNDRAAAVATAFSRGYL 205


>gi|260904160|ref|ZP_05912482.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brevibacterium linens BL2]
          Length = 207

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D     +   V  +  G  LL P              L++ Y + 
Sbjct: 80  VFSALRAGASGFLLKDATAEDMITAVRVVAEGQSLLAPS---------VTRRLISEYVSG 130

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + D       +LT RE++ +T +++G  + E+A  L ++  TV  +++ I+ K   +
Sbjct: 131 PKIAKDTAVLG--QLTDREIDVMTLVAKGHANAEVAEHLFLAEQTVKTHVSRILSKLGLR 188

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A  + +V
Sbjct: 189 DRTQIVVAAYESGLV 203


>gi|260433757|ref|ZP_05787728.1| transcriptional regulatory protein DegU [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417585|gb|EEX10844.1| transcriptional regulatory protein DegU [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 213

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 11/129 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    T          +LT  +  I  G   + P         L    LLA  + N
Sbjct: 90  VADALEAGATGYILKGVTASALTKSLRSIAKGEGFVSPG--------LASRVLLAIQKGN 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    G   +LT RE E L  +++G ++ EIA  L I   TV +Y+ SI+ K   +
Sbjct: 142 TPTGDRGVLG---DLTHREEEILRRVAKGLSNKEIAAELSIQEKTVKHYMTSILSKLHAR 198

Query: 232 TRSGAIAYA 240
            R  A   A
Sbjct: 199 NRVEAALIA 207


>gi|119511948|ref|ZP_01631045.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463368|gb|EAW44308.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 69

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE E L  I+ G  + EI+  L IS  TV N++ +I+ +   + R+ A   A
Sbjct: 3   ELTPREKEVLRLIAVGANNREISQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 58


>gi|86606978|ref|YP_475741.1| LuxR family transcriptional regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555520|gb|ABD00478.1| transcriptional regulator, LuxR family [Synechococcus sp. JA-3-3Ab]
          Length = 87

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE++ L  I+ G T+ +IA  L IS+ TV+N+I++I+ KT T  R   + +A++  
Sbjct: 11  LSERELQVLELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTSNRVALVRWALQWG 69


>gi|326775725|ref|ZP_08234990.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656058|gb|EGE40904.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 213

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA   A+     D        LT RE+E L  + EG ++ +I+  L +S+ TV +++ 
Sbjct: 130 SALAPSVAHRLM--DRMRTPAEALTRRELEVLQLVGEGLSNLQISKRLFLSQATVKSHLV 187

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +R+ A+A A    ++
Sbjct: 188 HIYAKLGVDSRTSAVAAATARRLI 211


>gi|315501090|ref|YP_004079977.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315407709|gb|ADU05826.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 220

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +     + A +  G+ ++     +I         L+A + A           + 
Sbjct: 94  RAGASGFLVKDTEPAELIHGVRVVARGDALIAPAVTRR--LIAEFAARTRHP--EPGPRL 149

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  ++ G ++DEIA  L +S  T   +++ IM KT  + R+  +  A  +
Sbjct: 150 NALTEREREVLALVAAGLSNDEIAARLVLSPATAKTHVSRIMTKTRVRDRAQLVVLAYES 209

Query: 244 NI 245
            +
Sbjct: 210 GL 211


>gi|212716361|ref|ZP_03324489.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660614|gb|EEB21189.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM
           16992]
          Length = 228

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S  +H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+
Sbjct: 157 SGPIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRT 216

Query: 235 GAIAYAVRNNIV 246
               +A    IV
Sbjct: 217 ELTRWAADRRIV 228


>gi|205353119|ref|YP_002226920.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272900|emb|CAR37830.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
            NTV  ++ ++ +K A K R+ A+++A
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|218782824|ref|YP_002434142.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764208|gb|ACL06674.1| two component transcriptional regulator, LuxR family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 16/201 (7%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
            +  + VG +   L   ++ ++ K D I+  D     +  +A   + K     +RP    
Sbjct: 28  RSEFQVVGEADNGLAAIEMTRKCKPDLILL-DLSMPKMNGLATMRQLKK----ERPEVKI 82

Query: 110 CPVFHTLPENITPPAGMD--NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
             +     ++   PA  +  + Y     D   + + +  +      +  D       L+ 
Sbjct: 83  LVITMHASQDYLIPALKEGADGYLLKGDDPQELFMAIRAIMDGKAYLSSD-------LSG 135

Query: 168 YQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +   + D     D    LT RE E    ++EG T+ +IA +L IS  TV+ +  ++M
Sbjct: 136 QLIHSVINPDTREAADPLASLTQREKEVFQLVAEGNTNQQIADLLFISPKTVDKHRTNLM 195

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K    +      +A++N I+
Sbjct: 196 KKLDLHSAREVSNFALKNGII 216


>gi|329937507|ref|ZP_08287065.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329303383|gb|EGG47270.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214
           + L    +L        ++           EL+GRE E LT I    ++ EIA  L +S 
Sbjct: 123 EALLAPTVLTRVLDRFLRTLPDPEPPPSLRELSGREREVLTLIGRALSNAEIAARLCLSE 182

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV N++ +++RK   + R  A+  A  + +V
Sbjct: 183 ATVKNHVTAVLRKLGLRDRVQAVVTAYDHGLV 214


>gi|229818194|ref|ZP_04448476.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM
           20098]
 gi|229784445|gb|EEP20559.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM
           20098]
          Length = 226

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY- 176
           +  +        Y + T   + + I  +    +G  +   +L    L A    +   S  
Sbjct: 96  DVGSVIRAGAQGYVTKTISGSDL-ISSIKQVHEGYAVFSPKLAGFVLSAFQNGSSTNSSI 154

Query: 177 --DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              +H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+
Sbjct: 155 GGSIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISVKTVETHVSSVLRKLQLSNRT 214

Query: 235 GAIAYAVRNNIV 246
               +A    IV
Sbjct: 215 ELTRWAADRRIV 226


>gi|301299416|ref|ZP_07205696.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853022|gb|EFK80626.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 218

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 21/229 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D+Q+    S L    D    +  +D        + ++ E       + +R         
Sbjct: 7   ADDQKLIRES-LKIVLDTYQDIQVIDTVGDGKQVLESIEEQEPDVILMDIRMPNMDGTVS 65

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
             +V   +P   +  +   + D +             +F  L    +        Y    
Sbjct: 66  TKLVKQSYPHIKIIILTTFDDDDF-------------IFSALKYGAS-------GYILKG 105

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  ++  G +I  +   ++  L +  A      DV       +T  E   +
Sbjct: 106 VSPTELHDAITTVYNGGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVI 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +  G ++ EI+  L +S  TV N+++ I+ K   + R+    +AV+N
Sbjct: 166 YQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 214


>gi|253773935|ref|YP_003036766.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161147|ref|YP_003044255.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B str.
           REL606]
 gi|300928412|ref|ZP_07143945.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|242376846|emb|CAQ31561.1| CsgD transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253324979|gb|ACT29581.1| transcriptional regulator, LuxR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973048|gb|ACT38719.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli B str. REL606]
 gi|253977262|gb|ACT42932.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BL21(DE3)]
 gi|300463575|gb|EFK27068.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|323962640|gb|EGB58218.1| luxR family protein regulatory protein [Escherichia coli H489]
 gi|323973370|gb|EGB68559.1| luxR family protein regulatory protein [Escherichia coli TA007]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|317054416|ref|YP_004118441.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
 gi|316952411|gb|ADU71885.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 243

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 171 NMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           +++   +V   + D  L+ RE E L W S GKT  EIA +L I+ +TV  ++  I++K  
Sbjct: 161 HLYHEENVRTSRHDDTLSARENEILYWSSTGKTYPEIARMLDITVSTVKFHMGKIVKKLG 220

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI+ A+  NI+
Sbjct: 221 VNNAKHAISLAIELNII 237


>gi|289770298|ref|ZP_06529676.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289700497|gb|EFD67926.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 235

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +      R   L    F       +      + +         +  G+  +   
Sbjct: 75  GIEATRRIVAGGGRSRVLILTTFDLDEYAYSGLRAGASGFLVKDALPEELLSGIRAVATG 134

Query: 151 GRIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++         LL AY  ++        +      +   LT RE E L  + +G T+ 
Sbjct: 135 DAVVAPSLTRR--LLDAYVHHLPAAGTRDHTPGSPDPRLSPLTERETEILRVMGQGWTNT 192

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L ++ +TV  ++  I+ KT ++ R  A+  A    +V
Sbjct: 193 EIAERLHLAESTVKTHVGRILAKTGSRDRVQAVILAYETKLV 234


>gi|256392927|ref|YP_003114491.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256359153|gb|ACU72650.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 236

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +   G   R  +L   +  +  G  LL P             GL+A + + 
Sbjct: 104 VFEALRSGASGFLGKGARPDALIDAIRTVARGDALLSPSATR---------GLIARFLSL 154

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E    +++G ++ +IA  L +S  TV  ++   M K   +
Sbjct: 155 QDTEPVHPSPLLTTLTDRERELTALVADGMSNTDIARQLTLSPLTVKTHVNHAMTKLGAR 214

Query: 232 TRSGAIAYAVRNNI 245
            R+  +  A +  +
Sbjct: 215 DRAQLVVLAYQTGL 228


>gi|17230043|ref|NP_486591.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|75906706|ref|YP_321002.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|17131643|dbj|BAB74250.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|75700431|gb|ABA20107.1| transcriptional regulator, LuxR family [Anabaena variabilis ATCC
           29413]
          Length = 87

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 39/62 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   + +A++
Sbjct: 9   PVTLSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILDKTRTENRVALVRWALQ 68

Query: 243 NN 244
             
Sbjct: 69  WG 70


>gi|332877914|ref|ZP_08445652.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684209|gb|EGJ57068.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 205

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 158 RLWEIGLLAAYQANMFKSY-------DVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            L ++   A                 +   G    L+ RE+E LT I  G T+ EIA  L
Sbjct: 105 ALLQLQQHAHAHGRHLPQNMPRPYMTNTSPGDPNGLSTREIEVLTLIVRGLTNKEIADRL 164

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV ++  +IM K   ++ SG   YAV N  +
Sbjct: 165 CISTTTVISHRKNIMEKLNVRSVSGLTIYAVMNGYI 200


>gi|326334144|ref|ZP_08200369.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325948061|gb|EGD40176.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 215

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V     + I    G    Y + T   + +   +  +     +    RL    L
Sbjct: 78  PRYLALSVSDAAEDVIGTIRGGARGYVTKTITGSELVAAIQRVSGGDAVFSP-RLAGFVL 136

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            A          D    +   LT RE E +  I+ G +  E+A  L IS  TV  +++++
Sbjct: 137 DAFAGTIAIADIDEDLDR---LTEREREVMRLIARGYSYKEVAGELFISIKTVETHMSNV 193

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           +RK    +R     +A    ++
Sbjct: 194 LRKLQLSSRHELTRWANDRRLL 215


>gi|170781406|ref|YP_001709738.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155974|emb|CAQ01108.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 224

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 9/163 (5%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           +R   L        + +    +   V  T   + +    ++   + Y         I  G
Sbjct: 59  LRMPGLDGVGATARIREEAPGVRVLVLTTYETDASILTAIEAGASGYLLKAAPEEEILAG 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +        G+ AA    + +      G    L+ RE + L  ++ G+T+
Sbjct: 119 VRAVARGEVALAP------GIAAALVRQVARPAAEPAGPTPTLSPRETQVLALVAGGRTN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA+ L ++  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 173 ARIALELHVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLL 215


>gi|116249431|ref|YP_765272.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254081|emb|CAK12478.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 959

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 3/154 (1%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           S+ + +  V Q   EL  P        +    G               R G  L    G 
Sbjct: 806 SDLEGWEAVAQSWAELSQPF--RQAYALMQAGGAAVSAGQRAKGAGHFRRGADLAHSTGA 863

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L +++  +   A       K  D+       LT RE E L  ++ G+++ EIAV L I
Sbjct: 864 SLLGNQIETLAKKARIDLGNGKEGDMPKA-PLGLTDREFEVLRLLAAGQSNREIAVNLFI 922

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  T + ++++I+ K +  +R  A A A R  IV
Sbjct: 923 SSKTASVHVSNILSKLSVPSRGAAAAMAHRLRIV 956


>gi|302557464|ref|ZP_07309806.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475082|gb|EFL38175.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 230

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 10/140 (7%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           E    VF  L    +     D     L   +  +  G  LL P+    L  +     + A
Sbjct: 99  ETDAYVFEALQAGASGFMLKDAGPAELLHAIRVVAAGDALLAPRITRRLIGQFTSQRVAA 158

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
               +              LT RE E L  + +G ++DEI   L +S  T   +++  M 
Sbjct: 159 QAAEDRLSV----------LTQREREVLALVGQGLSNDEIGAELCLSPATARTHVSHAMV 208

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   + R+  +  A R  +V
Sbjct: 209 KLGARDRAQLVVVAYRTGLV 228


>gi|258655128|ref|YP_003204284.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258558353|gb|ACV81295.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 982

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G T+ +I   L IS  TV+ +I++++ K     R+ A+A A R  +
Sbjct: 915 LTGREEEVLRLVAAGLTNRQIGERLYISGKTVSVHISNVLGKLGVGGRAEAVAVAHRRGL 974

Query: 246 V 246
           +
Sbjct: 975 L 975


>gi|302875540|ref|YP_003844173.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307690067|ref|ZP_07632513.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302578397|gb|ADL52409.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 220

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 80/233 (34%), Gaps = 22/233 (9%)

Query: 15  EDEQRTSF--VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            D+Q+     +  + +  D +  +   +        +      V     + VR  +    
Sbjct: 7   ADDQKIVREGIKMILSLYDEINVIGEAENGEELINLLQNFMADV---ILMDVRMPIIDGV 63

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
           +   I+   +    V  +    +D+Y             +F  +          D     
Sbjct: 64  EATKIIKERYIHTKVIILTTFNEDEY-------------IFKAIKNGADGYLLKDVGSEF 110

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           +   +  +  G MLL P+  + +      I      ++     +D    K   LT RE++
Sbjct: 111 IINAIRSVYNGAMLLDPEVTVKVVKAFNSI----TNESKNSNEFDNINNKLNSLTPREID 166

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
               +++GK++ +I   L ++  TV NY+  I+ K    +R+    +  +  I
Sbjct: 167 VAKLVAQGKSNKDICRSLFLTEGTVKNYVTRILGKLELNSRTELAVFINQAGI 219


>gi|269836626|ref|YP_003318854.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
            DSM 20745]
 gi|269785889|gb|ACZ38032.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
            DSM 20745]
          Length = 1034

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 57/166 (34%), Gaps = 11/166 (6%)

Query: 88   RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            + +A+    +    L      F      L          +  Y      V    + L   
Sbjct: 872  QPLAMLTAHRTLARLATLRRDFPTARQHLAGAERLATSFEAPYVLALVQVTHAELLLASG 931

Query: 148  FPKGRIIL-------RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                   L        + L    LLA       +   V  G    L+ RE+E L  ++EG
Sbjct: 932  RGHEAGGLLAAARATAEELGAKPLLAVIDHLEPRPTAVPGG----LSAREIEVLRLVAEG 987

Query: 201  KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             T  E+A  L IS  TV  ++ SI  K    +R+ A ++A +  +V
Sbjct: 988  LTDAEVAERLSISPRTVGGHLQSIYNKLGISSRTAATSFAHKFGLV 1033


>gi|297204156|ref|ZP_06921553.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714163|gb|EDY58197.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 232

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 45/84 (53%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+ A +        V   +   LTGRE + LT ++ G+++ EIA  L I+  TV ++++
Sbjct: 139 ALIDAVRNRRAVENSVPGNRLGTLTGRERDVLTAVASGESNAEIADRLCIAPTTVKSHVS 198

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I+ K   + R  A+ +A  + +V
Sbjct: 199 NILTKIGARGRVQAVVFAYESGLV 222


>gi|300857851|ref|YP_003782834.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685305|gb|ADK28227.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205581|gb|ADL09923.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302330135|gb|ADL20329.1| Two component LuxR family transcriptional [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275816|gb|ADO25715.1| Two component LuxR family transcriptional [Corynebacterium
           pseudotuberculosis I19]
          Length = 225

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 14/150 (9%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-------D 157
              L   V     + I+        Y + T   A +   +  +     +          D
Sbjct: 70  ARFLALSVSDAAEDVISVIRAGARGYVTKTISGAELIDAITRVHTGDAVFSPRLAGFVLD 129

Query: 158 RLWEIGLLAAYQANMFKSY-DVHWGKDFE------LTGREVECLTWISEGKTSDEIAVIL 210
                  + A   +  ++  +V  GK         LT RE+E L  ++ G T  EI   L
Sbjct: 130 AFARPDPMGAGVVDSPETDREVEEGKQVSDPIVDALTRRELEVLRLLARGYTYKEIGAQL 189

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            IS  TV  + ++I+RKT    R     +A
Sbjct: 190 FISVKTVETHASNILRKTQQSNRHALTRWA 219


>gi|311234756|gb|ADP87610.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris RCH1]
          Length = 250

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 10/127 (7%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                   +  +  + F V  +  G   + P             G LA      +   D 
Sbjct: 122 GADGLLLKEADHEEVRFAVRSVLAGGFFVSPSV----------AGRLATRCRQGWALEDR 171

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    LT RE E L +++EG  + EIA +L +S  TV  + A+ M K    + +   A
Sbjct: 172 RTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRA 231

Query: 239 YAVRNNI 245
           +A R  +
Sbjct: 232 FAQRQGL 238


>gi|218514607|ref|ZP_03511447.1| autoinducer transcriptional regulator protein [Rhizobium etli 8C-3]
          Length = 161

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I
Sbjct: 99  LSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRI 158

Query: 246 V 246
           +
Sbjct: 159 I 159


>gi|223935483|ref|ZP_03627400.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895893|gb|EEF62337.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 233

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 76/225 (33%), Gaps = 16/225 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             +  +   S    R+  ++           L E   +    +      +E     ++ S
Sbjct: 5   VSIPQVQPSSRAPLRVALVEDQKEIRENWTRLIESF-SDFKCVCTCSTGEEAL--RVIPS 61

Query: 81  DWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLT 134
             P  ++  + L             +   +    +   + ++      ++   + Y    
Sbjct: 62  VRPDVILMDIFLPRMSGIECTARFKESLPKTQIIILTAVDDDEMVFLALEAGADGYLLKR 121

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +R  L+ +   G  +  +       +A      F+    +      L+ RE E L
Sbjct: 122 TKPTDLRAALLDVLSGGAPMTSE-------IARRVVESFRRVSRNRQDTIRLSAREEEVL 174

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +S+G ++ EIA  + +S  TV +++  I  K   ++R+ A+A 
Sbjct: 175 VMLSKGYSNKEIADKIDLSVETVRSHLKHIYEKMHVRSRTEAVAR 219


>gi|256395226|ref|YP_003116790.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361452|gb|ACU74949.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 235

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 4/139 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---- 167
           V+ +L    +     D     L   +  +  G  ++ P     L +R        A    
Sbjct: 91  VYASLRAGASGFLLKDTLAADLLSAIRTVAAGDAVVAPSVTRRLLERFVGTNTAGASPTG 150

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                  +          LT RE E L  ++ G ++ EIA  + I   TV  +++ I+ K
Sbjct: 151 TTGTTGTASLASALAADTLTDREREVLAHLARGLSNSEIAAHIYIGEGTVKTHVSRILAK 210

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R  A+ YA  + +V
Sbjct: 211 LDLRDRVQAVVYAYESGLV 229


>gi|227892373|ref|ZP_04010178.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|227865780|gb|EEJ73201.1| response regulator [Lactobacillus salivarius ATCC 11741]
          Length = 220

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 21/229 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D+Q+    S L    D    +  +D        + ++ E       + +R         
Sbjct: 9   ADDQKLIRES-LKIVLDTYQDIQVIDTVGDGKQVLESIEEQEPDVILMDIRMPNMDGTVS 67

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
             +V   +P   +  +   + D +             +F  L    +        Y    
Sbjct: 68  TKLVKQSYPHIKIIILTTFDDDDF-------------IFSALKYGAS-------GYILKG 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  ++  G +I  +   ++  L +  A      DV       +T  E   +
Sbjct: 108 VSPTELHDAITTVYNGGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVI 167

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +  G ++ EI+  L +S  TV N+++ I+ K   + R+    +AV+N
Sbjct: 168 YQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 216


>gi|70729936|ref|YP_259675.1| sensory box transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344235|gb|AAY91841.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 495

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELT 187
           Y  +  D++  +   + L      ++RD  W    L    AN+   +S         ELT
Sbjct: 372 YLLVLMDISERKRSELELVGAIEEVMRDASWFSQTLIEKLANVRNTRSAQAPAVTSAELT 431

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I +G    EIA  L ++ NTV N++A++  K    +R  AI +A    +
Sbjct: 432 TREREVLGLIYQGLADKEIAAQLQLAPNTVRNHVATLYSKLDVHSRGEAIVWARERGL 489


>gi|16125332|ref|NP_419896.1| LuxR family transcriptional regulator [Caulobacter crescentus CB15]
 gi|221234071|ref|YP_002516507.1| LuxR family transcriptional regulator [Caulobacter crescentus
           NA1000]
 gi|13422382|gb|AAK23064.1| transcriptional regulator, LuxR family [Caulobacter crescentus
           CB15]
 gi|220963243|gb|ACL94599.1| LuxR family transcriptional regulator [Caulobacter crescentus
           NA1000]
          Length = 137

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L A  +  +F+  D        LTG+E++ L  ++ G+++ EIA  LG+S NTV  ++ +
Sbjct: 55  LAARARPEIFQRNDAALAS-LSLTGQEIKVLERLAAGRSNKEIARDLGLSPNTVKTHVGN 113

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +  K     R+ A+  A   +++
Sbjct: 114 LYAKLEVSRRTQAVGKARELSLI 136


>gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 237

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 69/186 (37%), Gaps = 10/186 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +Q L  +V +D     +    L  + +    L     +F        +         + Y
Sbjct: 51  QQMLPDVVITDVMMPRLDGYGLLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 110

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMF------KSYDVHW 180
               FD   +   +  +  + + +L++       ++G +A     +       ++     
Sbjct: 111 IPKPFDPDELVARVRNVAQRQQRLLQEAARFADADMGQMAKQITEIRSLLAQAEALPAQE 170

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                 T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA
Sbjct: 171 PVQHSFTPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYA 230

Query: 241 VRNNIV 246
           +++ +V
Sbjct: 231 LQHRLV 236


>gi|330810227|ref|YP_004354689.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378335|gb|AEA69685.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 494

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTG 188
           Y  +  ++   +   + L      +++D  W    L    AN+   +  V      ELT 
Sbjct: 368 YLLVLMNITERKRSELELVAAIEEVMKDASWFSRTLIEKLANVKSINAQVPSVSFTELTA 427

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE + L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A    +
Sbjct: 428 RERDVLGLICEGLADKEIAARLKLAPNTVRNHVATLYSKLDVHSRSEAIVWARERGL 484


>gi|271961795|ref|YP_003335991.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504970|gb|ACZ83248.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 60/189 (31%), Gaps = 18/189 (9%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLP 117
           L      + +++D +V           + +   D      +      P ++       L 
Sbjct: 33  LAALKALESRRVDVVVM---------DIRMPRMDGVIATREIQRLDGPPKVLVLTTFDLD 83

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           E+             L        I  +    +G  I+        L+    A      D
Sbjct: 84  EHALAALRAGASGFMLKDAPGEEIIAAIRHVHRGDSIIAPATTRR-LIGRLVAKADTDPD 142

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E    ++ G ++ EI V L +S  TV  ++  I+ K   + R  A+
Sbjct: 143 AVLKV---LTEREREVFLSLARGASNAEIGVELFLSETTVKTHVGRILTKLGLRDRVQAV 199

Query: 238 AYAVRNNIV 246
             A  + +V
Sbjct: 200 VLAYESGVV 208


>gi|111224125|ref|YP_714919.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111151657|emb|CAJ63376.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 270

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 28/192 (14%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             GAS F+L      ++ +   +V      D VR +   +      V +R  + F     
Sbjct: 102 RAGASGFML------KDVRPAELV------DAVRVVFRGDALLAPTVTRRLLDRF----- 144

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                 T P+  D    +      R R G   L    R I           AA      +
Sbjct: 145 ----ARTLPSVADASAPASDGPAGRRRAGPGPLGRPVRGISPPD-------AAGVGGEGE 193

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                     ELT RE   L  ++   ++ EIA  L ++  TV  ++++++RK   + R 
Sbjct: 194 WGARPRSGLAELTEREAVVLRLVALALSNAEIATELVLTEATVKTHVSAVLRKLGLRDRV 253

Query: 235 GAIAYAVRNNIV 246
            A+ +A  + +V
Sbjct: 254 QAVVFAYDHGLV 265


>gi|30316455|gb|AAP31397.1| hypothetical two-components response regulator protein [Pseudomonas
           putida]
          Length = 217

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT R+ E L  I++GKT+ EIA  L IS  TV  +++S+++     +R+ A   
Sbjct: 159 QLTHRQQEVLRLIAQGKTNKEIAKALSISPFTVRIHVSSLLKLLGVSSRTAAAVK 213


>gi|56413870|ref|YP_150945.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168244733|ref|ZP_02669665.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168264076|ref|ZP_02686049.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168467083|ref|ZP_02700925.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194444624|ref|YP_002040395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194450147|ref|YP_002045140.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197362793|ref|YP_002142430.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56128127|gb|AAV77633.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|154269337|gb|ABS72185.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden]
 gi|194403287|gb|ACF63509.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194408451|gb|ACF68670.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195630363|gb|EDX48989.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197094270|emb|CAR59776.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205336437|gb|EDZ23201.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205347328|gb|EDZ33959.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
            NTV  ++ ++ +K A K R+ A+++A
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|330468817|ref|YP_004406560.1| response regulator receiver protein [Verrucosispora maris
           AB-18-032]
 gi|328811788|gb|AEB45960.1| response regulator receiver protein [Verrucosispora maris
           AB-18-032]
          Length = 211

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 14/134 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L            R   +   V  +  G  +  P               +A     
Sbjct: 92  VFAALRAGARGYVLKGARRQEIVRSVRVVADGEAIFGP--------------AIATRLMG 137

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F     +     ELT RE E LT I++  T+ +IA   G+S  TV N++++I  K    
Sbjct: 138 YFAGLARNEPAFPELTAREREILTLIAQHLTNPQIAARFGLSTKTVRNHVSNIFAKLQVA 197

Query: 232 TRSGAIAYAVRNNI 245
            R+ AI+ A    +
Sbjct: 198 DRAQAISMAREQGL 211


>gi|298249219|ref|ZP_06973023.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297547223|gb|EFH81090.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1032

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 4/132 (3%)

Query: 119  NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
              T        Y  L  D   +   L+           D L  I    A   +       
Sbjct: 898  GPTLAQAEPEGYLRLFADEGEVMAHLLTRIAPFTTASPDYLQRIQAAIAPAWHTQPDPST 957

Query: 179  HWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              G        L+ RE   L  ++EG ++ +IA  L +S +TV  ++  ++ K     R+
Sbjct: 958  QAGPRSTPYEPLSARERSVLQLMAEGYSNQQIAEHLILSLHTVKLHVKHLLAKLGATNRT 1017

Query: 235  GAIAYAVRNNIV 246
             A+A A   +I+
Sbjct: 1018 QAVARARALHIL 1029


>gi|270261276|ref|ZP_06189549.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044760|gb|EFA17851.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 238

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 32/235 (13%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           NR      + +  +  R   L R+ P    + +         Y+  S +   R  +    
Sbjct: 3   NRIQPLMDALLDSVHDRELFLRRLEPCAQALGFEYY-----SYIVFSCYPASRPKM---- 53

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC------PVFHTLPENI--TPPA 124
               ++  ++P + +             V+ +              +   PE        
Sbjct: 54  ----LIEGNYPAEYLEDYRKLRVYLQDPVIDQAHHSTLQFHWDEEFYQDRPELWWRMAQF 109

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR---------LWEIGLLAAYQANMFKS 175
           G+   +     D    R+G++    K                 LW   +          S
Sbjct: 110 GIREGWSQSIKD-CYGRLGILTFAGKKIPEQSPEAGARNETFFLWLAQIAHKTLREALIS 168

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            +    KD  LT RE + L W SEGKTS+EIA+++G+S  TVN +I + ++K + 
Sbjct: 169 VNDEAIKDV-LTLREKDILRWCSEGKTSEEIAMLMGLSERTVNFHIGNSIKKLSV 222


>gi|297589527|ref|ZP_06948168.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MN8]
 gi|283471613|emb|CAQ50824.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Staphylococcus aureus subsp. aureus
           ST398]
 gi|297578038|gb|EFH96751.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MN8]
 gi|298695655|gb|ADI98877.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|312437187|gb|ADQ76258.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|323439615|gb|EGA97334.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323442719|gb|EGB00346.1| two-component response regulator [Staphylococcus aureus O46]
          Length = 200

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          +     L   +  +  G   +         D      L+  + +N 
Sbjct: 74  FHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYV---------DMKLTTSLVNEFVSNS 124

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K+
Sbjct: 125 NQDTANTSDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKS 184

Query: 233 RSGAIAYAVRNNIV 246
           +   + YA++  ++
Sbjct: 185 KPELVEYALKKKLL 198


>gi|118593225|ref|ZP_01550610.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
 gi|118434116|gb|EAV40772.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
          Length = 233

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 23/231 (9%)

Query: 39  LDCTVSWTMRMYALTE----------------YVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +        ++ A++E                 +GA+H L+    +      + +    W
Sbjct: 1   MLDQTELKSKLRAISEANAAHHVLDILESNLRRMGATHILITGLPMPNRPIDNLVQRFRW 60

Query: 83  P---FDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           P    D +   +LS  D      L         +     E+    A        L   V 
Sbjct: 61  PDQRNDGIESTSLSANDSALMLGLGSNRARVWTISAGDMEHSDLLASAGEGSQVLVIPVT 120

Query: 139 RIRIGLMLLFPKGRIILRDR--LWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLT 195
            +      +F  G  +  ++  L  +  LAA   +  +   V  G +   L+ RE + L 
Sbjct: 121 ELYPFQAFVFASGPALQVNKYDLSNLEALAAAAFSRLRELGVISGQRPGALSTRERKVLE 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + GKT+ EIA +L IS+ TV+ ++ +   K     ++  +  A+R   +
Sbjct: 181 LTAYGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231


>gi|33151542|ref|NP_872895.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi
           35000HP]
 gi|33147762|gb|AAP95284.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi
           35000HP]
          Length = 213

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 18/132 (13%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F ++   +      D+    L  ++ +  +G  +L    R  L +R  E   L+     
Sbjct: 93  IFASMDAGVDGYLLKDSDTSELRENIRKAVLGETVLSDSIRAHLLNRRPENDPLSV---- 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    
Sbjct: 149 --------------LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVH 194

Query: 232 TRSGAIAYAVRN 243
           +R  A    +  
Sbjct: 195 SRVAATILYLEQ 206


>gi|300087957|ref|YP_003758479.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527690|gb|ADJ26158.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 4/123 (3%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y      V  +   +  +      +      E+   A        S +      
Sbjct: 96  RAGARGYILKEASVDELVAAVREVAAGRHYLST----ELSQRAIAYYIKQPSAEEETSPY 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +L+ RE E L  +    T  +IA  L IS  TV  + A++MRK   K R+  I + ++N
Sbjct: 152 EQLSNREREVLHLVVRDYTGADIAKKLFISPRTVEAHRANLMRKLGMKNRTQLIKFCLQN 211

Query: 244 NIV 246
            I+
Sbjct: 212 GIL 214


>gi|307150361|ref|YP_003885745.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306980589|gb|ADN12470.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 224

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 3/177 (1%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           QEQ    I+  D    L+  ++ +++ K  +   +   L    +    + +   A   + 
Sbjct: 51  QEQLKPDIILMDIDLPLLDGISATQRIKRDDTATKI--LALSAYDHDTQVLGMLASGADG 108

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           YC    +   + + + L+   G + L  R+           +     +        L+ R
Sbjct: 109 YCLKNIEWEELLVIIRLISHGG-VYLDPRIAHKVSHLLKSGSFAVETNTTPKAVTVLSER 167

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E   L  I+EG ++ +IA  L +S  T+ +Y+  ++ K +   R  A A AVR  ++
Sbjct: 168 ERLILKLIAEGFSNKKIAEQLFLSPGTIKSYVRMLLNKLSVDDRVQAAAKAVREGLI 224


>gi|186684363|ref|YP_001867559.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466815|gb|ACC82616.1| transcriptional regulator, LuxR family [Nostoc punctiforme PCC
           73102]
          Length = 87

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 39/62 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   + +A++
Sbjct: 9   PVSLSDRELQIIDLVAAGLTNQEIAGKLEISKRTVDNHISNILTKTETENRVALVRWALQ 68

Query: 243 NN 244
             
Sbjct: 69  WG 70


>gi|90961071|ref|YP_534987.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820265|gb|ABD98904.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 218

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 21/229 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D+Q+    S L    D    +  +D        + ++ E       + +R         
Sbjct: 7   ADDQKLIRES-LKIVLDTYQDIQVIDTVGDGKQVLESIEEQEPDVILMDIRMPNMDGTVS 65

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
             +V   +P   +  +   + D +             +F  L    +        Y    
Sbjct: 66  TKLVKQSYPHIKIIILTTFDDDDF-------------IFSALKYGAS-------GYILKG 105

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  ++  G +I  +   ++  L +  A      DV       +T  E   +
Sbjct: 106 VSPTELHDAITTVYNGGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVI 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +  G ++ EI+  L +S  TV N+++ I+ K   + R+    +AV+N
Sbjct: 166 YQVGRGLSNKEISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 214


>gi|297197881|ref|ZP_06915278.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
 gi|297146901|gb|EDY61655.2| transcriptional regulator [Streptomyces sviceus ATCC 29083]
          Length = 256

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDE 205
           F    + L ++L  +      Q  + +  +    +  D  LT RE   L  + +  T+  
Sbjct: 148 FTDDELRLAEQLQPLLAAVEQQRQLLRRLNAPSEEAADLALTPRETTVLLLLGDALTAVS 207

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   LGIS  TV+ +IA+I RK  T  R   + +A R  +V
Sbjct: 208 IGRRLGISERTVHKHIANIYRKLGTHDRVSTVLHAQRLGLV 248


>gi|294501457|ref|YP_003565157.1| spore germination regulator [Bacillus megaterium QM B1551]
 gi|295706805|ref|YP_003599880.1| spore germination regulator [Bacillus megaterium DSM 319]
 gi|294351394|gb|ADE71723.1| spore germination regulator [Bacillus megaterium QM B1551]
 gi|294804464|gb|ADF41530.1| spore germination regulator [Bacillus megaterium DSM 319]
          Length = 74

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|302543141|ref|ZP_07295483.1| putative response regulator [Streptomyces hygroscopicus ATCC 53653]
 gi|302460759|gb|EFL23852.1| putative response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 213

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 16/196 (8%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL--PENITPPA 124
           D    +   S +      DLV   A+S       + + P +        L   E + P  
Sbjct: 17  DPISREGTISQLRQHPEVDLVDEAAVSGAGVAVLLAESPDQALLSQLRRLVRSEGLHPVL 76

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKG------RIILRDRLWE-------IGLLAAYQAN 171
            +     +   DV    +G ++   +       R +      +       +G L +   +
Sbjct: 77  VVSLIREAELLDVIECGVGAIVWRHEATGGRLLRAVTAAFHGDGDLPSDLLGRLISQVGS 136

Query: 172 MFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +      H   +   LT RE++ L  ++EG  + EIA  L  S  TV N +  +  +   
Sbjct: 137 LRPGTSGHLATQPSGLTPREIDVLRLVAEGMGTGEIASKLSYSERTVKNIMQGLTTRLDL 196

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+ A+AYA+R   +
Sbjct: 197 RNRAHAVAYALREGYI 212


>gi|311740351|ref|ZP_07714180.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304535|gb|EFQ80609.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 223

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ +I   L +S  TV +++  I  K   ++R+ A+A A    +
Sbjct: 163 LTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGV 222

Query: 246 V 246
           +
Sbjct: 223 L 223


>gi|29827472|ref|NP_822106.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29604571|dbj|BAC68641.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 235

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 11/193 (5%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVF 113
           L+   +     +   +   D P  ++  + + E D      Q            L   +F
Sbjct: 37  LVATSEAATGTEAVRLARQDPPDVVLMDVRMPEMDGIEATRQICGSPETADVKVLILTMF 96

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                         + +       + +   + ++     ++         L+A +     
Sbjct: 97  DLDEYVYAALRAGASGFLLKDTPPSELLAAVRVIAAGEALLAPAVTRR--LIAEFVHRPE 154

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S  +    D  +T RE E LT I+ G ++ EIA  L +   TV  +++ ++ K AT+ R
Sbjct: 155 PSRPLRRTLD-GVTEREREVLTLIACGLSNTEIAERLYLGIATVKTHVSHLLTKLATRDR 213

Query: 234 SGAIAYAVRNNIV 246
           +  +  A  + +V
Sbjct: 214 AQLVIVAYESGLV 226


>gi|295838096|ref|ZP_06825029.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|295826844|gb|EFG65089.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 10/163 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +   +    +L  P      V  T   +      ++           R    
Sbjct: 66  MDLQLGAGIDGVEATRRLLALPAPPRVLVLTTYDTDADVTRAVNAGATGYLLKAERPE-- 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              LF       R R      +A       ++         ELT RE + L  +S+G  +
Sbjct: 124 --ELFAAIHAAARGRTALSPPVAHRVLAHLRAP------RPELTPRERDILAQLSQGLGN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS  TV  ++  + +K    TR+GA+A A    ++
Sbjct: 176 RDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 218


>gi|302540802|ref|ZP_07293144.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458420|gb|EFL21513.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 221

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    L+  +A + +      L     +    F           G  + +     
Sbjct: 49  DVVLMDIRMPLLDGLAATRRITEDPALAEVKVVMLTTFELDEYVFEAIRGGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+A + A   +          ELT RE E + 
Sbjct: 109 EPEELLRAVRAVVDGDALLSPGVTRR--LIAEFAARSKEPAPASVLA--ELTEREREVMA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|239987130|ref|ZP_04707794.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 242

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 76/240 (31%), Gaps = 8/240 (3%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           + +     TS     P R  L      L       +      E VG +       +L + 
Sbjct: 1   MTQPTPASTSDAREAPIRVLLADDQALLRSAFRVLVDSEPDMEVVGEAADGAQAVELARA 60

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D +V  D        +A +        L     +    F      +       + + 
Sbjct: 61  TGAD-VVLMDIRMPGTDGLAATRMISADPELAAVRVVMLTTFEVDEYVVQSLRAGASGFL 119

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----L 186
               +   +   + +      ++        GL+A + A    S +     ++      L
Sbjct: 120 GKGAEPDELLNAIRIAAAGEALLSPAATK--GLIATFLAQGGSSQEGPDSAEYAERLAAL 177

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TGRE E L  ++ G  +D IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 178 TGREREVLVQVAGGHPNDRIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 237


>gi|226363828|ref|YP_002781610.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242317|dbj|BAH52665.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 546

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--------ANMFKSYDVHWGKDF 184
             ++ AR+R  + L+          ++      A Y+          +   +        
Sbjct: 421 APYECARVRESIALVCRGLGDDDTAQMEHDLASATYRQLGALPDLERLRAEFRSDAADST 480

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REV  L  ++ GK++  +A  L +S  TV  ++++I  K    +RS A AYA  ++
Sbjct: 481 PLTPREVCVLRLVAAGKSNRAVATDLFLSEKTVARHLSNIFVKLGISSRSAATAYAYEHH 540

Query: 245 IV 246
           +V
Sbjct: 541 LV 542


>gi|254388484|ref|ZP_05003718.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814098|ref|ZP_06772741.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326442500|ref|ZP_08217234.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197702205|gb|EDY48017.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326697|gb|EFG08340.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 207

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 11/166 (6%)

Query: 83  PFDLVRCMALSEKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           P  ++  + L E        +R    E+   V  T   +      ++           R 
Sbjct: 50  PAVVLMDLQLGEGIDGVEATRRIAALEVHVLVLTTYDTDADITRAIEAGATGYLLKAERP 109

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                 LF   R   + R      +A    +  +      G    LT RE++ L  ++ G
Sbjct: 110 E----ELFAAIRAAAQGRTALSAPVATRVMDRMRG-----GGRPSLTERELDILGQLARG 160

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + EIA  L IS  TV  ++  I  K    TR+GA++ A    ++
Sbjct: 161 LGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVSVAKEQRLL 206


>gi|325272909|ref|ZP_08139236.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51]
 gi|324101953|gb|EGB99472.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51]
          Length = 665

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 124 AGMDNRYCSLTFDVARIRIGLML--LFPKGRIILRDRLWEIG---LLAAYQANMFKSYDV 178
            G   +      + AR  +      L  +    L+++L       +      ++      
Sbjct: 537 DGQAAQLLPGLLEAARGGVLQPFQPLLQRHPQWLQEQLLARAGCPVQVDLLGHLPALPSA 596

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    L+GRE+  L  I++G ++ +I+  L IS +TV  + + I  K   + R+ A+A
Sbjct: 597 PCGSSEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVERRTQAVA 656

Query: 239 YAVRNNIV 246
            A    ++
Sbjct: 657 KAKSLGLL 664


>gi|333020553|gb|EGK39813.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-227]
          Length = 190

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 109 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 168

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 169 FKKIAVKNRTQAVSWA 184


>gi|303256662|ref|ZP_07342676.1| nitrate/nitrite response regulator protein NarL [Burkholderiales
           bacterium 1_1_47]
 gi|330999299|ref|ZP_08323016.1| nitrate/nitrite response regulator protein NarL [Parasutterella
           excrementihominis YIT 11859]
 gi|302860153|gb|EFL83230.1| nitrate/nitrite response regulator protein NarL [Burkholderiales
           bacterium 1_1_47]
 gi|329575157|gb|EGG56708.1| nitrate/nitrite response regulator protein NarL [Parasutterella
           excrementihominis YIT 11859]
          Length = 214

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                    D     +  D+ +   G  +L       L + L E                
Sbjct: 99  NGADGYLLKDQEPEQILEDIQKAAKGQTVLSASMNQALAECLREESF------------- 145

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +  ELT RE   L  I++GKT+ EI   L IS  TV  ++  ++ K + ++R  A 
Sbjct: 146 SKERRVSELTEREKSVLKLIAQGKTNKEIGKALEISDGTVKVHVKHVLHKLSFRSRVEAA 205

Query: 238 AYA 240
            +A
Sbjct: 206 VWA 208


>gi|282865368|ref|ZP_06274420.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282559841|gb|EFB65391.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 8/176 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCP---VFHTLPENITPPAGMDNRY 130
            +     P  ++  + +   D       L RP  ++ P   V  T  ++      +    
Sbjct: 42  ELAERHRPDVVLMDIRMPRMDGLEALRRLTRPGTVYPPKVVVVTTFDDDEYVQRALGEGA 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                   +     +L+         + L    +       +  +          L+ RE
Sbjct: 102 SGFLI---KDSGPALLVEAIRAAASGEALVSPAITVRLLRRLNNAVPTSREPHTALSERE 158

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +  ++ G T+ EIA  L IS  TV  ++ ++  K + + R    A+A  + +V
Sbjct: 159 KDLVRLVARGLTNAEIATELTISVGTVKTHLGNVQTKLSARNRVEIAAWAWESGLV 214


>gi|257069626|ref|YP_003155881.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256560444|gb|ACU86291.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 222

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 8/175 (4%)

Query: 77  IVSSDWPFDLVRCMALSEKDK------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +V    P  L+  + + + D         ++   P  +    F              + +
Sbjct: 42  LVQKHRPDVLLMDVRMPKLDGIAATKAVSDLPSPPKIIMLTTFDMDEYVFQALEAGASGF 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   + ++      +L   +    L    +AN     D H G + +LT RE
Sbjct: 102 LLKDTPPQELARAVHVVAGGD-AMLSPTITRRMLSHFSEANPGSRQDRHPGLE-QLTDRE 159

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E L  +  G ++ +I + L +S  TV  +++ I  K     R      A    +
Sbjct: 160 TEVLGAVGAGLSNAQIGMRLFMSEATVKAHVSKIFAKLDCTNRVQIAIIAHEAGL 214


>gi|312200374|ref|YP_004020435.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231710|gb|ADP84565.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 10/134 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +       R   L   V  +  G  LL P     + DRL    +       
Sbjct: 90  VFGALRAGASGFLLKRTRPEDLIAAVHTVAAGDALLSPSVTRRVIDRLTRQPVPDLAGTR 149

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        +LT RE E L  +++G ++ EIA  L +  +TV  +   ++ K   +
Sbjct: 150 ALA----------DLTPREREVLELMAQGLSNREIARHLVVEESTVRTHAKRVLAKLGLR 199

Query: 232 TRSGAIAYAVRNNI 245
            R  A+ +A  N I
Sbjct: 200 DRIQAVIFAYENGI 213


>gi|296126426|ref|YP_003633678.1| LuxR family transcriptional regulator [Brachyspira murdochii DSM
           12563]
 gi|296018242|gb|ADG71479.1| transcriptional regulator, LuxR family [Brachyspira murdochii DSM
           12563]
          Length = 320

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S          LT RE E L+++ +GKT+ E+++IL IS NTVNN++A+I  K+  K R 
Sbjct: 253 SNIEDIENAVNLTRREREILSYLLDGKTNKEVSLILDISLNTVNNHVANIYEKSGVKNRV 312

Query: 235 GAI 237
             +
Sbjct: 313 ELV 315


>gi|159039733|ref|YP_001538986.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157918568|gb|ABV99995.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 228

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y + T     +   +  +     +           L
Sbjct: 92  RFLALSVSDAAEDVIGLIRSGARGYVTKTISPDDLAAAVRRVADGDAVFSP-------RL 144

Query: 166 AAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           A +  + F +       D EL   T RE E L  ++ G    EIA  L IS  TV  +++
Sbjct: 145 AGFVLDAFAARPDAPVSDPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVS 204

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK    +R     +A    +V
Sbjct: 205 NVLRKLQMSSRYELSRWAADRRLV 228


>gi|239978812|ref|ZP_04701336.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 213

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  +E+       + P  L    F      +         +     
Sbjct: 47  DVVLMDVRMPEVDGIRATERVLAAGGERAPRVLVLTTFENDDHVLAALRAGAAGFLLKRA 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   + ++     ++    +  + L      +  ++ +  W     LT RE E L 
Sbjct: 107 EAETLLHAVRVVARSDTLLFPSSVRALAL----AHDPRRAAEPPWAAR--LTDREREVLH 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ G T+ EIA  L +   TV +++A+++ KT T+ R+ A+  A    +
Sbjct: 161 LMATGLTNAEIAARLTVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGL 210


>gi|291295648|ref|YP_003507046.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470607|gb|ADD28026.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 200

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 56/173 (32%), Gaps = 23/173 (13%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYC 131
           V +  P  L+  + +          +          +    F              + Y 
Sbjct: 43  VKTHQPDLLITDIEMPHLSGLELAAEVKKLGLGTRVVIVTTFGRAGYLRRALEAGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 + +   +  ++  GR I         LLAA            W ++  LT RE 
Sbjct: 103 LKDAPSSELAEAVRRVYLGGRAIDP-------LLAA----------QAWSEEDPLTDRER 145

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L    EG+TS EIA  LG+S  TV NY++  + K   + R  A   A    
Sbjct: 146 RVLRLAGEGRTSAEIAAELGLSEGTVRNYLSEAISKLGAQNRVEAARIAREKG 198


>gi|38233207|ref|NP_938974.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199466|emb|CAE49117.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 231

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD-------VARIRIGLMLLFPKGRI 153
           + +    L   V     + I+        Y + T         + R+  G  +  P+   
Sbjct: 72  IGRNRRFLALSVSDAAEDVISVIRAGARGYVTKTISGAELVDAIRRVHDGDAVFSPRLAG 131

Query: 154 ILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFE------LTGREVECLTWISEGKTSDEI 206
            + D       + A   N  +S   V  GK         LT RE+E L  ++ G T  EI
Sbjct: 132 FVLDAFARPDPVGAGVVNAPESDRAVEEGKPVADPIVDALTRRELEVLKLLARGYTYKEI 191

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L IS  TV  + ++I+RKT    R     +A  +++
Sbjct: 192 AAELFISVKTVETHASNILRKTQQSNRHALSRWAQSHDL 230


>gi|313202129|ref|YP_004040787.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|312441445|gb|ADQ85551.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 232

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 7/169 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +    + K  + L +   +   V     + +       + Y     
Sbjct: 71  DVVLIDLNMKGLNGIETLRRFKIESSL-QARFVVLTVSDAEDDLLEALRAGADGYLLKDM 129

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +    +     G  +++D L E+   A  +    K+ D     D  LT RE E L 
Sbjct: 130 EPEDL-CASLKKVISGMTVIQDSLTEVLKQALLEPRTRKADD-----DVALTDREQEILQ 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +++G  +  IA  LGIS  TV  +I  ++ K    +R  A  +A R  
Sbjct: 184 CLADGLNNKTIARKLGISDTTVKVHIKHLLSKLKLTSRLEAAVWAHRKK 232


>gi|285808415|gb|ADC35942.1| two component transcriptional regulator LuxR family [uncultured
           bacterium 70]
          Length = 210

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K   +   +   LT RE+E L  I  G ++ EIA  LG+S NTV  + A+IM        
Sbjct: 135 KPPSLKGERTHGLTPRELEVLQLICSGMSNKEIAEELGLSVNTVAVHRANIMNALGLHKT 194

Query: 234 SGAIAYAVRNNIV 246
           +  + YA+ N +V
Sbjct: 195 AELVVYAISNGLV 207


>gi|300788854|ref|YP_003769145.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798368|gb|ADJ48743.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 210

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 19/138 (13%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   L          D     L  ++ R+  G  ++ P+   IL D       LA  
Sbjct: 92  HQGVLAALESGAHGCLLKDAAGAQLVTELRRVLRGERVVDPR---ILPDAGQRSDALA-- 146

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            LT RE E L   ++G+T+ EIA   G++RNTV  Y+ S + K 
Sbjct: 147 --------------RSGLTRREYEVLRLAAQGQTNPEIAESTGLARNTVKTYLQSALHKL 192

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + R  AI  A    ++
Sbjct: 193 GARNRVEAIGKASEAGLL 210


>gi|5834774|emb|CAA74720.1| response regulatory protein [Streptomyces reticuli]
          Length = 217

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 10/163 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +   +    +   P      V  T   +      ++           R    
Sbjct: 64  MDLQLGEGIDGVETTRRLRAEPPAPHVLVLTTYDTDADVTRAIEAGATGYLLKAERAED- 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              LF   +   + R      +A    +  +           LT RE + L  +S G ++
Sbjct: 123 ---LFTAIQAAAQGRPALSPPVADRVMSRLR------NPRPALTPREQDILAHLSRGLSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 174 HAIARALYISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLL 216


>gi|329928715|ref|ZP_08282564.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937496|gb|EGG33914.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 73/180 (40%), Gaps = 10/180 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALS---EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           E+ L  ++       L+  + +      +    + +R  ++   +  T  ++      + 
Sbjct: 37  EEALSLLMDGLHADVLLMDIRMPVCDGVEGTRRIRERYPDVRVLMLTTFDDDDYIVEALR 96

Query: 128 NR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKD 183
           N    Y        RI  G+  +     +I  D   ++ G+L      + +S ++   + 
Sbjct: 97  NGASGYLLKNIPPDRIIQGIKTVHDGNMLIHPDIARKLTGMLRPTPQPVPRSAEL---EQ 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT  E + +  I+EG ++ EIA  L +S  TV NY+  I+ K   + R+    + ++ 
Sbjct: 154 FGLTPAEKKVVALIAEGLSNKEIAAQLYLSEGTVKNYVTDILGKLNLRDRTQIAIFYLKK 213


>gi|227511386|ref|ZP_03941435.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227523593|ref|ZP_03953642.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227085337|gb|EEI20649.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227089253|gb|EEI24565.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D H      L+ RE E    ++ G T+ EIA  L IS  TV  + ASIM K +  +R  
Sbjct: 147 VDAHLQGYRSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPE 206

Query: 236 AIAYAVRNNIV 246
            + YAV ++++
Sbjct: 207 LVRYAVHHHLI 217


>gi|170078637|ref|YP_001735275.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886306|gb|ACB00020.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 17/194 (8%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHT 115
           + +L+    L  +Q LD I     P  +V  + + E D +     +  +PT    P    
Sbjct: 24  AGYLVA-VVLSGKQGLD-IWLEFQPDLIVSDVRMPEMDGFEFCRYIRSQPTGQLIPFLFL 81

Query: 116 -----LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
                +   +       + Y +  F++  +   +     +   I      E+  LAA QA
Sbjct: 82  SSQTDVEARVEGHFSGADDYIAKPFEMKELLAKIERQLARIENIRA----EMQRLAA-QA 136

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N+ +       +   LT  E+       +G T+ +I+  L +S  TV  +++SI+ K   
Sbjct: 137 NVEQMKQAP--EPLPLTPAEMRVFWEAVQGWTNKQISEHLYVSPRTVQTHLSSILNKLNL 194

Query: 231 KTRSGAIAYAVRNN 244
           + RS  + +A  N 
Sbjct: 195 ENRSQLVRFAYENG 208


>gi|167035632|ref|YP_001670863.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862120|gb|ABZ00528.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1]
          Length = 235

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 13/180 (7%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYC 131
           S++P + +      +  K             PV  T                 G+ + + 
Sbjct: 56  SNYPSEWIERYQRDDFYKQDPAAHMSHSSTTPVLWTDDLYRDAPQFREAACQHGLRHGWT 115

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFEL 186
               D+      + +  P  +I + +   + G +      +      H           +
Sbjct: 116 QSLHDLQHNESQISVARPAEKIDIVELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPRM 175

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L W + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A     +
Sbjct: 176 SERELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|88196315|ref|YP_501137.1| hypothetical protein SAOUHSC_02675 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|269204023|ref|YP_003283292.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus ED98]
 gi|87203873|gb|ABD31683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|262076313|gb|ACY12286.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus ED98]
 gi|269941974|emb|CBI50386.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           TW20]
 gi|302752262|gb|ADL66439.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|312830737|emb|CBX35579.1| transcriptional regulatory protein degU (Protease production
           enhancerprotein) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|329315077|gb|AEB89490.1| Oxygen regulatory protein nreC [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 200

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          +     L   +  +  G   +         D      L+  + +N 
Sbjct: 74  FHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYV---------DMKLTTSLVNEFVSNS 124

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K+
Sbjct: 125 NQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKS 184

Query: 233 RSGAIAYAVRNNIV 246
           +   + YA++  ++
Sbjct: 185 KPELVEYALKKKLL 198


>gi|295839793|ref|ZP_06826726.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|295827655|gb|EDY44664.2| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 206

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 8/166 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
             V +  P  ++  + +   D               P ++       L E +        
Sbjct: 42  DQVRALQPDVVLMDIRMPRMDGVEATRQITGPERDGPVKVLVLTTFDLDEYVVEALRAGA 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               L    A   +  + +   G  +L   +    LL  Y  ++    +        LT 
Sbjct: 102 SGFLLKDAPAHELVQAIRVVASGEAMLAPSVTRR-LLDKYAGHLPSGEEQQPSSLQTLTE 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R 
Sbjct: 161 REVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRV 206


>gi|258652817|ref|YP_003201973.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556042|gb|ACV78984.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 217

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+  Y   + +      G    LT RE + +  I+EG ++ EIA  L IS  TV+ + A
Sbjct: 135 SLMRTYLDRLARGERPGRG---PLTPREADVVKLIAEGHSAQEIADCLSISPRTVDRHRA 191

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I+ K   + R     YA+R  ++
Sbjct: 192 NILEKLDLRDRVDLTRYAIRAGLI 215


>gi|221200509|ref|ZP_03573551.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
 gi|221206190|ref|ZP_03579204.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221174202|gb|EEE06635.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221179850|gb|EEE12255.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
          Length = 209

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 2/110 (1%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V +      LL     ++  +R     LL    A   +           LT R++E L +
Sbjct: 102 VPKSASAHTLLSAIVMVLNGERYVPPLLLDDGAAYAIEP--TRHAAGAPLTPRQIEVLRY 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG  +  IA  LG+S  TV  +I +I R      R+ A A   +  ++
Sbjct: 160 LAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGLI 209


>gi|182414312|ref|YP_001819378.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177841526|gb|ACB75778.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 212

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  I  G ++ EI   L +  +TV  ++ +I+ K     R+ A+   V+  
Sbjct: 148 HLSTRELEVLALIGRGLSNKEIGAALNVVESTVKVHVTNILSKLGVADRTQAVLAGVKRG 207

Query: 245 IV 246
           I+
Sbjct: 208 II 209


>gi|168789970|ref|ZP_02814977.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli O157:H7 str. EC869]
 gi|189370464|gb|EDU88880.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli O157:H7 str. EC869]
          Length = 240

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|120601631|ref|YP_966031.1| two component LuxR family transcriptional regulator [Desulfovibrio
           vulgaris DP4]
 gi|120561860|gb|ABM27604.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris DP4]
          Length = 235

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 10/127 (7%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                   +  +  + F V  +  G   + P             G LA      +   D 
Sbjct: 107 GADGLLLKEADHEEVRFAVRSVLAGGFFVSPSV----------AGRLATRCRQGWALEDR 156

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    LT RE E L +++EG  + EIA +L +S  TV  + A+ M K    + +   A
Sbjct: 157 RTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRA 216

Query: 239 YAVRNNI 245
           +A R  +
Sbjct: 217 FAQRQGL 223


>gi|325922114|ref|ZP_08183907.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC
           19865]
 gi|325547411|gb|EGD18472.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC
           19865]
          Length = 923

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D     D   + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R 
Sbjct: 839 SGDEDPAGDI-FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRE 897

Query: 235 GAIAYAVRNNIV 246
            A+A A++  ++
Sbjct: 898 SALAQALQRGLL 909


>gi|320007212|gb|ADW02062.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 223

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 9/172 (5%)

Query: 80  SDWPFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENIT---PPAGMDNRYCSLT 134
           S+ P   V  +A+      +    L R       +  T+ +N                L 
Sbjct: 54  SERPDLAVLDIAMPRLTGLQAARELSRVMPELRILMLTMYDNEQYFFEALKAGASGFVLK 113

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               R  +       +    L        L+  Y   +    DV    D  +T RE E L
Sbjct: 114 SVADRDLVEACRAAMRDEPFLYPG-AVTALIRNYLDRVRDGGDV---PDRAITEREEEIL 169

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++EG +S EIA +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 170 KLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 221


>gi|330973427|gb|EGH73493.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 87

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R 
Sbjct: 22  VQLTAKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 81

Query: 244 NIV 246
            ++
Sbjct: 82  GVI 84


>gi|241764572|ref|ZP_04762589.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241365975|gb|EER60596.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 237

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 18/151 (11%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     +  T        Y   T D   +   +        ++  + + +  L+
Sbjct: 84  RVLMLTVSEDAQDLATALRNGAQGYLLKTIDGDLLAQAIRRAAAGEPVVSPELMGK--LV 141

Query: 166 AAYQANMFKSYDVHWGKDFE----------------LTGREVECLTWISEGKTSDEIAVI 209
           AA+Q+      D       E                L+ RE E L  I  G ++ EIA +
Sbjct: 142 AAFQSQGAPEADALEPGSAERSQPPAAFDVGDASTPLSPREEEVLREIVRGASNKEIARV 201

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L I+  TV  ++  I+RK    +R  A  YA
Sbjct: 202 LDIAETTVKIHVQHILRKLGLSSRVQAAVYA 232


>gi|297560931|ref|YP_003679905.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845379|gb|ADH67399.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 217

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    +V  +    +      L     +    F              + +     
Sbjct: 50  DVVLMDVRMPVVDGLEALRRIAGEEALAHTRVVVLTTFELDEYVFEALRAGASGFLIKDS 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +        ++       +  +AA+ +   +       +   LT RE E + 
Sbjct: 110 DPQEMLAAVRAAARGEALLSPSVTRRV--VAAFVSR--EPGGGRVPRLEVLTEREREVVG 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EG +++EIA  L +S  T   +++  M K   + R+  + +A R  +V
Sbjct: 166 LVGEGLSNEEIAARLVVSPATARTHVSRAMVKLGARDRAQLVVFAFRAGLV 216


>gi|149913176|ref|ZP_01901710.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           AzwK-3b]
 gi|149813582|gb|EDM73408.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           AzwK-3b]
          Length = 242

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 77/236 (32%), Gaps = 21/236 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
                L  +            +  L + +G  H ++  W     ++        +P   V
Sbjct: 8   RLDSFLEALEGASDIDDLQRLIERLRDEIGVDH-VVYHWVSSGGEQYG---CGTYPAAWV 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTFDV 137
           +     +  +   V+Q   + F PV                +     G+ N+  S+    
Sbjct: 64  QLYVAKDYLRIDPVVQGCYQTFHPVDWKRLDWSSRAARAFLSDAVAHGIGNQGYSVPLRG 123

Query: 138 ARIRIGLMLLFPK----GRIILRDRLWE-IGLLAAYQANMFKSYDVHWGK--DFELTGRE 190
              +  L  +          +  D     + L+A Y  +     +          L+ RE
Sbjct: 124 PNGQFALFSVSHHCTDEAWAMFTDTHRRTLILIAHYFNHKALLLEPGRCPLTAQPLSPRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V+ +T ++ G +  ++A  L IS +T+  Y+ S   K        A++ A+   ++
Sbjct: 184 VDVITLLAMGYSRAQVAETLMISEHTLRTYVESARLKLGAINTLHAVSRAITRGLI 239


>gi|152976905|ref|YP_001376422.1| response regulator receiver protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025657|gb|ABS23427.1| response regulator receiver protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 74

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|325282015|ref|YP_004254557.1| two component transcriptional regulator, LuxR family [Odoribacter
           splanchnicus DSM 20712]
 gi|324313824|gb|ADY34377.1| two component transcriptional regulator, LuxR family [Odoribacter
           splanchnicus DSM 20712]
          Length = 223

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D E++ RE+E L  +  G ++ EIA  L IS+ TV+ + A+++ KT  +  +  + YA+
Sbjct: 157 PDNEISERELEILYHVCLGLSNQEIADKLFISKRTVDKHRANLLSKTGCRNTAALVMYAI 216

Query: 242 RNNIV 246
           +N ++
Sbjct: 217 KNKMI 221


>gi|291302402|ref|YP_003513680.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571622|gb|ADD44587.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +A + K      L     +    F              + +     
Sbjct: 52  DVVLMDIRMPGLDGLAATAKITAEASLTSVRIIILTTFDLDEYVFEALRSGASGFLVKDT 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   + ++     ++         L+A +     +   V   K  +LT RE E + 
Sbjct: 112 EPVELLQAVRVVARGDALLSPGVTRR--LVAEFAQRAKEP--VSAKKLEQLTEREREVVA 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               G +++EI   L +S  T   +I+  M K   + R+  + +A  + +V
Sbjct: 168 LAGTGLSNEEIGAKLFLSPATAKTHISRAMIKLGARDRAQLVVFAYESGLV 218


>gi|284032185|ref|YP_003382116.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811478|gb|ADB33317.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 222

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 4/144 (2%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            RP  L    F              + +         +   + ++     ++       +
Sbjct: 75  DRPRVLVLTTFDLDAYVYEALRSGASGFLLKDARPEDLLTAIRVIAAGDGMLAPTVTRRL 134

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            + A  QA           +   LT RE E L  ++ G+++ EI   LG++  TV  ++ 
Sbjct: 135 -IHAFAQAAPTPGTSQTLDR---LTPREREVLALLAAGRSNAEIGDELGVATGTVKTHVN 190

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K   + R  A   A    +V
Sbjct: 191 ALLSKLDARDRVQATIIAYDTGLV 214


>gi|225350985|ref|ZP_03742008.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158441|gb|EEG71683.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 228

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S  +H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+
Sbjct: 157 SGPIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRT 216

Query: 235 GAIAYAVRNNIV 246
               +A    IV
Sbjct: 217 ELTRWAADRRIV 228


>gi|170692899|ref|ZP_02884061.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170142555|gb|EDT10721.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 240

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 16/154 (10%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   V     +           Y   T D   +   ++       ++  +   ++     
Sbjct: 81  LMLTVSEDERDLGAALRAGARGYLLKTVDAEALADSIVRTMRDESVVSPEMTGKLVQAYR 140

Query: 168 YQAN----------------MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             AN                +          +  L+ RE E LT+I+ G ++ EIA  L 
Sbjct: 141 AMANAGEGDASSIADDDPATLKPEAQHGSEPEPALSIREQEILTYIARGASNKEIARALA 200

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IS  TV  ++  I+RK    +R  A  YA  N I
Sbjct: 201 ISETTVKIHVQHILRKLKLTSRVQAAVYATVNAI 234


>gi|332525737|ref|ZP_08401884.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332109294|gb|EGJ10217.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 326

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            ELT RE E L W+ +GKT+ +I  ILG S  TV  ++  +  K   +TR+
Sbjct: 259 LELTAREAEVLYWVVQGKTNRDIGDILGTSHRTVTKHLEHVFEKLGVETRT 309


>gi|295399431|ref|ZP_06809413.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110010|ref|YP_003988326.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978897|gb|EFG54493.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215111|gb|ADP73715.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1]
          Length = 74

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +     LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A
Sbjct: 3   DKSFQPKPLLTKREREVFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQA 62

Query: 237 IAYAVRNN 244
           +   +R  
Sbjct: 63  VIELLRMG 70


>gi|110634656|ref|YP_674864.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285640|gb|ABG63699.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 265

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 77/224 (34%), Gaps = 19/224 (8%)

Query: 41  CTVSWTMRMYALTEYVGASHF---LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
            T      +    +  G +     ++   +  + ++L  ++   WP +  R         
Sbjct: 42  TTEEVNHSLMIFLQRYGVTSLIAGMIPPSNSSRREQLSYVLLDGWPEEWKRRYFSLGYLH 101

Query: 98  YYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRY-----CSLTFDVARIRIGL 144
               +       CP FH                       +      + +F     +   
Sbjct: 102 RDPAIH-LVRRGCPHFHWSEIREHCSVCPIGRRIMNEAREFQLRAGVTFSFPTLESKTFG 160

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L+  +   +    L+ +  +AA+        +  V    +  L+ R+ E + W SEG T
Sbjct: 161 FLVAAEELDLAETDLFTLQFVAAFGLGCALTLAGGVVGRSNVHLSRRQREVVAWASEGLT 220

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +DEIA  L +S +T + ++ ++  +        A+A A+R  ++
Sbjct: 221 ADEIAERLNVSVHTADMHLRAVRTRLGVANTVHAVAEALRLGLI 264


>gi|297202549|ref|ZP_06919946.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|297148137|gb|EFH28852.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 910

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 8/173 (4%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-PPAGMDNRYCS 132
           L    S+D P      +   E       L R          ++P     P          
Sbjct: 733 LLRAESADTPDHWCEAITAVEPLGRPFDLARVRHRLAEALLSVPGGAEQPERDRATELLR 792

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L    A       L      +  R RL       A  A +         +   LTGRE +
Sbjct: 793 LAHAAAEHLGARPLADAVTLLAQRARL-------ALTAVVPVLDRSDPLRSLGLTGRERD 845

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  ++ G+T+ +IA  L IS  T + ++++I+ K     R  A A A R  +
Sbjct: 846 VLRLVTLGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRLGL 898


>gi|320012105|gb|ADW06955.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 216

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 7/171 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V+ D    L+  +  +       V   P  L    F              + +     
Sbjct: 50  DVVAMDVRMPLMDGIEATRVVLR-TVTDPPKILVVTTFENDEYVYEALRAGADGFLLKRA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A I   + L+     ++    + ++       A    S          LT RE   L 
Sbjct: 109 RPAEIVNAVRLVAEGETLLFPAAVRQLA------AEYGTSKAHAAMDRAALTTREAAVLR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV  +++S++ K   + R+ A+  A  +  V
Sbjct: 163 LMARGLSNSEIAAELVVGVETVKTHVSSVLAKLGARDRTQAVIAAYESGFV 213


>gi|261339343|ref|ZP_05967201.1| putative csgAB operon transcriptional regulatory protein
           [Enterobacter cancerogenus ATCC 35316]
 gi|288318141|gb|EFC57079.1| putative csgAB operon transcriptional regulatory protein
           [Enterobacter cancerogenus ATCC 35316]
          Length = 216

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N    +T +  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYVTEEEGRVVEGLQGILRGECYFSQK-------LASYLITHSGNYRYNSSESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|255324096|ref|ZP_05365220.1| response regulator, two-component system [Corynebacterium
           tuberculostearicum SK141]
 gi|255298797|gb|EET78090.1| response regulator, two-component system [Corynebacterium
           tuberculostearicum SK141]
          Length = 212

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ +I   L +S  TV +++  I  K   ++R+ A+A A    +
Sbjct: 152 LTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGV 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|239981400|ref|ZP_04703924.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291453255|ref|ZP_06592645.1| two component response regulator MppU [Streptomyces albus J1074]
 gi|291356204|gb|EFE83106.1| two component response regulator MppU [Streptomyces albus J1074]
          Length = 223

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 3/169 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V +D     +  + +  +       +   ++       L E + P          L  
Sbjct: 50  DVVLADIRMPRMDGLEVVRRLAGPRAPEPRPKVVVVTTFDLDEYVYPALRNGASGFLLKR 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               + +  +     G  ++      + LL     N          ++  LT RE E   
Sbjct: 110 SGPALLVEAVRAAMAGDSLISPS-VTVRLLRHVTGNRTPGDPAP--REEALTEREGEIAA 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ++EG T+ +IA  L IS  TV  ++A+I RK   + R G    A    
Sbjct: 167 LVAEGGTNADIAAELFISPGTVKTHVAAIQRKFGVRNRVGIAVRAFERG 215


>gi|261380927|ref|ZP_05985500.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava
           NJ9703]
 gi|284796180|gb|EFC51527.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava
           NJ9703]
          Length = 218

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTS 203
            LL    + +  D ++   + +    ++             +LT RE+E L +++ G ++
Sbjct: 111 FLLESIRKAVDGDNVFSPEMTSRLVQSLISPSPSRSDHLLAQLTPREMEILGYLAAGHSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L ++ +TV  ++ +++RK    +R  A  YAV++ +
Sbjct: 171 KIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHKV 212


>gi|223936934|ref|ZP_03628843.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894503|gb|EEF60955.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 226

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 37/78 (47%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A      F +      +  +L+GRE E L  ++EG ++ EI   L IS  TV  ++  I
Sbjct: 144 IARMVVRSFIADTPEKDETGQLSGREQEILALLAEGLSNKEIGSKLNISFTTVRTHLMHI 203

Query: 225 MRKTATKTRSGAIAYAVR 242
             K   + R+ A A  +R
Sbjct: 204 YEKLHVRCRTEAAAKYLR 221


>gi|145588751|ref|YP_001155348.1| two component LuxR family transcriptional regulator
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047157|gb|ABP33784.1| two component transcriptional regulator, LuxR family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 197

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               +    +  +LT R+ E L  IS G ++  IA  L IS  TV  ++  I +K     
Sbjct: 124 LMGLNPDEAELTQLTDRQKEILAHISNGDSNKMIAYSLNISEQTVKVHLGEIFKKIKVFN 183

Query: 233 RSGAIAYAVRNN 244
           R+ A+  A  N 
Sbjct: 184 RTQAVIKAKENG 195


>gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 225

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 76/199 (38%), Gaps = 22/199 (11%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107
           +Y+    + ++  +  +E     I+  D P  ++  + + E D Y   +++  +      
Sbjct: 37  DYLEFRGYEVITAENGREAL--EILEQDVPDMIICDVMMPEMDGY-TFVEQVRQNERTSW 93

Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              LF        + +       + Y    F+   +   +         + +   W+   
Sbjct: 94  IPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTIRWKEHQ 147

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
               +             D +LT  E++ + +++ G  + EIA  L +S+ TV ++++++
Sbjct: 148 AKGGENGSRIQVPF----DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 203

Query: 225 MRKTATKTRSGAIAYAVRN 243
           + KT    R+    +A+ N
Sbjct: 204 LGKTNLHNRTELARWAIEN 222


>gi|282899592|ref|ZP_06307556.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195471|gb|EFA70404.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis
           raciborskii CS-505]
          Length = 97

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   + +A++
Sbjct: 9   PVTLSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRWALQ 68

Query: 243 NN 244
             
Sbjct: 69  WG 70


>gi|256380511|ref|YP_003104171.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924814|gb|ACU40325.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 216

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 3/147 (2%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             L     L   V     + I         Y + T     +   ++ +  +G  +   RL
Sbjct: 73  KALPEVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSQELVRAVVRVA-EGDAVFSPRL 131

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               +L A+      +       D  LT RE + L  ++ G    EIA  L IS  TV  
Sbjct: 132 AGF-VLDAFADRPGAAPISDPELDL-LTPRERDVLRLLARGYAYKEIASELFISVKTVET 189

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++S++RKT    R     +A    +V
Sbjct: 190 HVSSVLRKTQLSNRYELSRWASDRRLV 216


>gi|330821614|ref|YP_004350476.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373609|gb|AEA64964.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 509

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGIS 213
           ++D  W   +L    AN+ ++     G    +LTGRE E    +  G    EIA+ L +S
Sbjct: 400 MQDASWFSRMLIEKLANVRRTNSPDAGAQLSDLTGREREVFDLLCRGLADKEIAIKLNLS 459

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            NTV N++A+I  K    +R+ AI +A    
Sbjct: 460 PNTVRNHVATIYGKLDVHSRTEAIVWARERG 490


>gi|300691151|ref|YP_003752146.1| transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
 gi|299078211|emb|CBJ50858.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 252

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 24/189 (12%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D IV+ D+P + +  +          +++R      PV+    E   P A +D  + +
Sbjct: 52  LMDHIVTVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVYF---EATAPTAEVDRVWLA 108

Query: 133 ------LTFDVARIR------IGLMLLFPKGRIILRDRLWEI---------GLLAAYQAN 171
                 L   VA         IG    F +   I    L  +           L    A+
Sbjct: 109 KFVAHDLRNAVADGVYDEGHCIGTYFSFHRLPSIDAPFLASVLRDLTPVLHRTLMRAVAD 168

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +++         L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT   
Sbjct: 169 SERTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 228

Query: 232 TRSGAIAYA 240
            R G    A
Sbjct: 229 NRVGVAVLA 237


>gi|154686976|ref|YP_001422137.1| GerE [Bacillus amyloliquefaciens FZB42]
 gi|308174538|ref|YP_003921243.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7]
 gi|154352827|gb|ABS74906.1| GerE [Bacillus amyloliquefaciens FZB42]
 gi|307607402|emb|CBI43773.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328554460|gb|AEB24952.1| transcriptional regulator [Bacillus amyloliquefaciens TA208]
 gi|328912864|gb|AEB64460.1| transcriptional regulator of spore coat protein [Bacillus
           amyloliquefaciens LL3]
          Length = 74

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|159037948|ref|YP_001537201.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916783|gb|ABV98210.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 230

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE E L  ++ G+++ EIA  L +S  TV  ++  ++ K   + R  A+  A  + 
Sbjct: 165 PLTGREREVLIQVARGRSNAEIAQALSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYESG 224

Query: 245 IV 246
           ++
Sbjct: 225 LI 226


>gi|326329224|ref|ZP_08195550.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325952959|gb|EGD44973.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 232

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 166 AAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           A   A M +  ++     D ELT RE+E L  ++ G ++  I   L IS  T   ++ +I
Sbjct: 151 ARSAAAMIRGVNMPVTSDDSELTSRELEVLELLAHGLSNRAIGHRLYISDTTAKFHVGNI 210

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           +RK     R+ A+  A +  ++
Sbjct: 211 LRKLGVSRRAEAVYEASKMGLL 232


>gi|311894385|dbj|BAJ26793.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 8/167 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGL 144
           VR       +    +++        +  T   +    AG+        L        +  
Sbjct: 57  VRMPGTDGIEAARRIVRECPGTKVLILTTFDLDEYAFAGLAAGASGFLLKNTRPEQLLAA 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISE 199
           +     G  +L  R+    LL   + ++  + D    +D       L+ RE E L  +  
Sbjct: 117 IRDVAAGDAVLSPRITRR-LLEDVRPHLPAAPDHRDHRDLPDPSARLSAREHEVLVQVGR 175

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L ++  TV +++  I+ K   + R  A+  A R  +V
Sbjct: 176 GLSNAEIAAALHLAEATVKSHLGRILPKLGLRDRVQAVVLAHRAGLV 222


>gi|306837140|ref|ZP_07470077.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304566988|gb|EFM42616.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 223

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L+   A+   +          LT RE+E L  ++ G ++ +I   L +S  TV +++ 
Sbjct: 142 SALSPIVADRLMTR--VRTPRTSLTPRELEVLQLVAAGASNRQIGHDLMLSEATVKSHLV 199

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K   ++R+ A+A A    ++
Sbjct: 200 HIYDKLGVRSRTSAVAAAREQGVL 223


>gi|297191011|ref|ZP_06908409.1| two component system DNA binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297150723|gb|EDY65386.2| two component system DNA binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 213

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA   A+     D        LT RE+E L  + +G ++ +I+  L +S+ TV +++ 
Sbjct: 130 SALAPAVAHRLM--DRMRTPAEALTKRELEVLQLVGDGLSNLQISKRLFLSQATVKSHLV 187

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +R+ A+A A    ++
Sbjct: 188 HIYAKLGVDSRTSAVAAATARRLI 211


>gi|254390102|ref|ZP_05005323.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813469|ref|ZP_06772112.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441818|ref|ZP_08216552.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703810|gb|EDY49622.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326068|gb|EFG07711.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 219

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P    + R  + E   LA  QA 
Sbjct: 91  VYQALRAGASGFLLKDASARQLAEGVRVVASGEALLAPT---VTRRLINEFSKLA--QAP 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S      +  ELT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   +
Sbjct: 146 RIASV----AQLGELTERETEVLALIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLR 201

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A  +A    +V
Sbjct: 202 DRTQAAVFAYEARLV 216


>gi|11465809|ref|NP_053953.1| ORF29 [Porphyra purpurea]
 gi|1723332|sp|P51343|YCF29_PORPU RecName: Full=Probable transcriptional regulator ycf29
 gi|1276809|gb|AAC08229.1| hypothetical chloroplast ORF 29 [Porphyra purpurea]
          Length = 209

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 21/189 (11%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP 122
           D+         +++ + FDL+    +      Y +L++  ++      PV     + +T 
Sbjct: 30  DIALNGLEAFQLANKYKFDLIISDIIMPIIDGYELLEKLRKIDKLAKIPVIFLTAKGMTK 89

Query: 123 PAGMDN-----RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                       Y S  FD   +   +        +I RD L    L          S +
Sbjct: 90  DRIKGYNMGCYGYLSKPFDPEELVSLI------KNLIYRDSLNSQNL------KKQNSDE 137

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +   +   LT RE   L  + +G T+ EIAVIL  S   V  Y++ +++KT T+ R+  +
Sbjct: 138 IPLFQLLYLTPREKSILNLVIDGLTNKEIAVILDTSIRNVEKYVSRLLQKTNTRNRTLLV 197

Query: 238 AYAVRNNIV 246
            Y+++NN++
Sbjct: 198 KYSIKNNLL 206


>gi|327479056|gb|AEA82366.1| DNA-binding response regulator CorR [Pseudomonas stutzeri DSM 4166]
          Length = 194

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R++L+   W   +L       ++           LT RE E L+   +G ++ EI
Sbjct: 89  LLEGIRVLLKGGDWLPRVLTERLLGQWRRMRQLAESKTSLTLREREILSLAGKGLSNAEI 148

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S +T+ ++I +++RK     R+ A AY +R+++
Sbjct: 149 AEQLCLSPHTIKSHIHNLLRKIGASNRAEA-AYLLRSHL 186


>gi|325965270|ref|YP_004243176.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323471357|gb|ADX75042.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 230

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++EG ++ EIA    +S  TV  ++  I+ K   + R  A+ YA    
Sbjct: 162 DLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|319638279|ref|ZP_07993042.1| LuxR family Transcriptional regulator [Neisseria mucosa C102]
 gi|317400552|gb|EFV81210.1| LuxR family Transcriptional regulator [Neisseria mucosa C102]
          Length = 218

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTS 203
            LL    + +  D ++   + +    ++             +LT RE+E L +++ G ++
Sbjct: 111 FLLESIRKAVDGDNVFSPEMTSRLVQSLISPSPSRSDHLLAQLTPREMEILGYLAAGHSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L ++ +TV  ++ +++RK    +R  A  YAV++ +
Sbjct: 171 KIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQHKV 212


>gi|284041733|ref|YP_003392073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945954|gb|ADB48698.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 225

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 8/160 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +   E  +      R   L    F              + +     +   +   + ++ 
Sbjct: 67  RLDGIEATRRVVAGGRARVLVVTTFEHDDYVYEALRAGASGFVLKRAEPEELVQAVRIVA 126

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEI 206
               ++         L  A  A   +      G      LT RE E L  ++ G ++ ++
Sbjct: 127 GGESLVFP------QLTRALIARSVQPGAGDGGARLLTVLTEREAEILRLVARGMSNADV 180

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L ++ +TV  ++A I+ K A + R+ A+  A  +  V
Sbjct: 181 ADELVLAVHTVKTHVARILAKLAVRDRTQAVVVAYESGFV 220


>gi|154252142|ref|YP_001412966.1| two component LuxR family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156092|gb|ABS63309.1| two component transcriptional regulator, LuxR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 215

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 43/84 (51%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           + +I L A  +     +         +LT R+ E L  + +G+++ EIA +LGIS  TV 
Sbjct: 123 IPDILLTAHAEGFAETTDSFLGAGHEKLTPRQREVLLELGKGRSNQEIAHVLGISIATVK 182

Query: 219 NYIASIMRKTATKTRSGAIAYAVR 242
            ++ +I++    + R+ A   A+R
Sbjct: 183 LHVNAILQTLGVRNRTEAAIIALR 206


>gi|284029985|ref|YP_003379916.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809278|gb|ADB31117.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 67/181 (37%), Gaps = 7/181 (3%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           DL  E + D +V  D    L+  +  + +      L     +    +             
Sbjct: 41  DLAVEHRPD-VVLMDVQMPLMDGIEATRRIAGDARLADVHVVILTNYGLDEYVFNALRAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +     +   +   L ++     ++         L++ + A   +  DV      EL
Sbjct: 100 ASGFLVKDTEPVDLLQALRVVIRGDALLSPTVTRR--LISEFVA---RPPDVVSTAGLEL 154

Query: 187 -TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L  ++ G ++D+IA  + +S  T   +++  M K   + R+  +  A ++ +
Sbjct: 155 LTPREREVLALVAHGLSNDQIAERMVLSPTTAKTHVSRAMSKLQARDRAQLVVIAYQSGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|297622897|ref|YP_003704331.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164077|gb|ADI13788.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 508

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 1/152 (0%)

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
            + + N+  R       V   L        G +     L +D+   +     L    + +
Sbjct: 357 PEAFRNLELRLRTKTGEVRDILISGEVLRFGDERGQLKLFYDITERKQTEEQLHRALQEV 416

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           + D  W    +   + +  ++  +       L+ RE + L  ++ GK+++ IA  LG++ 
Sbjct: 417 MSDTAWFSSQV-LERLSQVRARKLERSALVTLSKRERQVLERLARGKSNEAIAAELGLAT 475

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV NYI+++  K   ++R+ A+ +A    ++
Sbjct: 476 QTVRNYISAVYDKLGVRSRAEAVVWARERGVI 507


>gi|283784837|ref|YP_003364702.1| CsgAB operon transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282948291|emb|CBG87871.1| probable CsgAB operon transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 216

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N    +T D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYVTEDEERVVYGLQGILRGECYFSQK-------LASYLITHSGNYRYNGTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|126348327|emb|CAJ90048.1| putative two component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 221

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    L+  +A + +      L+    +    F              + +     
Sbjct: 49  DVVLMDIRMPLLDGLAATRRITGDAGLRDVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+A + A   +      G+   LT RE E + 
Sbjct: 109 EPEELLRAVRAVVAGDALLSPSVTRR--LIAEFAARSKEP--AAAGELARLTEREREVMA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|46581079|ref|YP_011887.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450500|gb|AAS97147.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 227

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 10/127 (7%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                   +  +  + F V  +  G   + P             G LA      +   D 
Sbjct: 99  GADGLLLKEADHEEVRFAVRSVLAGGFFVSPSV----------AGRLATRCRQGWALEDR 148

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    LT RE E L +++EG  + EIA +L +S  TV  + A+ M K    + +   A
Sbjct: 149 RTGGWEALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRA 208

Query: 239 YAVRNNI 245
           +A R  +
Sbjct: 209 FAQRQGL 215


>gi|291446355|ref|ZP_06585745.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349302|gb|EFE76206.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 16/173 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDNRYCSLTF 135
           P  L+  + + E D    VL++   L  P        F                      
Sbjct: 56  PDVLLLDIRMPEVDG-LTVLRQVGTLTAPPAVAMLTTFDAARHIDDALRSGAVGLLMKNT 114

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              ++   + +L   GRI+  + +  +  G LAA              +   LT RE + 
Sbjct: 115 APEQLVHAVRVLAAGGRILAPEAVGPVIEGYLAAG------RDSGAADRTGALTDREGQV 168

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +  G ++ EIA  L +S  TV ++++S++ K     R  A   A R  ++
Sbjct: 169 LALVGAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQAAVLADRAGLI 221


>gi|290955190|ref|YP_003486372.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644716|emb|CBG67801.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+  Y   +    +     D  +T RE E L  ++EG +S EIA +L IS  TV+ + A
Sbjct: 139 ALVRNYLDRVRHGEEP---PDQVVTPREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRA 195

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K   + R     YA+R  ++
Sbjct: 196 NLLHKLGLRDRLELTRYAIRAGLI 219


>gi|320009929|gb|ADW04779.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 222

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 2/123 (1%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++  G+ ++     ++         L+  +             + 
Sbjct: 99  RAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRR--LITEFSKIAEAPRPPAMARI 156

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A   
Sbjct: 157 GDLTERETEVLVLIAQGLSNLEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 216

Query: 244 NIV 246
            +V
Sbjct: 217 RLV 219


>gi|229819214|ref|YP_002880740.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229565127|gb|ACQ78978.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 209

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 12/174 (6%)

Query: 77  IVSSDWPFDLVRCMALSE---KDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCS 132
           +V++  P  +V  + +         +     P   +     +  P+++ P      R   
Sbjct: 43  VVAATSPDLVVTDLRMPGGGVSLITHLAASAPGVAVLVLTTYDTPDDVLPALDAGARGYV 102

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L             LF   R +     +    +A    +  ++          L+GREV+
Sbjct: 103 LKDAPRE------ELFRAVRAVADGETFLAPSVAGLLVSRVRARQQPA--PAALSGREVD 154

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +++G+T+ + A +LG++  TV  ++  +  K     R+ A+A   R+ ++
Sbjct: 155 VLRLVADGRTNRQAAQLLGVTEATVKTHLLHVYAKLGVPDRAAAVAAGYRSGLL 208


>gi|144228246|gb|ABO93630.1| PagR [Pantoea agglomerans pv. gypsophilae]
 gi|163676290|gb|ABY40374.1| PabR [Pantoea agglomerans pv. betae]
          Length = 230

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  K+  L+ RE + L W+  GKT  E+AVIL I+  TV   + ++M+K      + A+ 
Sbjct: 161 HQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFLMGNVMKKLGVNNATHAVK 220

Query: 239 YAVRNNIV 246
                 ++
Sbjct: 221 LGTELRLL 228


>gi|148656116|ref|YP_001276321.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148568226|gb|ABQ90371.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 220

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           + F+   V    + +LT RE + LT ++ G  +  IA  L +S  TV N ++ I +K   
Sbjct: 138 DEFRRLSVDQDAE-QLTERERDILTLLAAGYDNRTIAQRLFLSEKTVGNRLSEIFQKLGV 196

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A   AV+  ++
Sbjct: 197 SNRTQAALVAVQRGLI 212


>gi|77458474|ref|YP_347979.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382477|gb|ABA73990.1| putative transcriptional regulator, LuxR family [Pseudomonas
           fluorescens Pf0-1]
          Length = 239

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 27/230 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLV------ 87
           +      V+    +       G   F+L       E  ++ I  V  DW  D +      
Sbjct: 16  IEAAPTLVAIQKAVRGFAGAYGYDRFVLFSATSASEDVVERIYWVEGDWFGDGIAVDAQT 75

Query: 88  ---------RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                      +   E   +  V ++  EL+  V          P+G       +     
Sbjct: 76  YVQRCPVTRHLLDARESFFWSKVQEQSGELYRLV--------RVPSGPGVHGLQIPVFGP 127

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTW 196
           +   G M L  +           +G+LA+      +        +   +L+ RE E L W
Sbjct: 128 QGLEGAMSLGGEQIDASARVRLALGMLASVAFFSARRLLEAPLDETAGKLSTREREVLAW 187

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G+   +IA  LG+S  TV N++ S  R     T + AI  A+R   +
Sbjct: 188 VAAGRRQADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKGEI 237


>gi|289549975|ref|YP_003470879.1| Two-component response regulator [Staphylococcus lugdunensis
           HKU09-01]
 gi|315659398|ref|ZP_07912261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|289179507|gb|ADC86752.1| Two-component response regulator [Staphylococcus lugdunensis
           HKU09-01]
 gi|315495517|gb|EFU83849.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 217

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          +     L   V  +  G M +         D      L+  +    
Sbjct: 91  FHVLRNGAKGYILKNAPDEQLILAVRTVYQGEMYV---------DMKLTTSLVNEFVNQP 141

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K+
Sbjct: 142 QYDTGTTNDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMSKLGLKS 201

Query: 233 RSGAIAYAVRNNIV 246
           +   + YA++  ++
Sbjct: 202 KPELVEYALKKKLL 215


>gi|218549230|ref|YP_002383021.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii
           ATCC 35469]
 gi|218356771|emb|CAQ89399.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia fergusonii ATCC 35469]
 gi|324113838|gb|EGC07812.1| luxR family protein regulatory protein [Escherichia fergusonii
           B253]
 gi|325497648|gb|EGC95507.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii
           ECD227]
          Length = 216

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K + K R+ A+++A
Sbjct: 195 FKKISVKNRTQAVSWA 210


>gi|31790492|emb|CAD56670.1| putative regulatory protein [Citrobacter sp. Fec2]
          Length = 216

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 46/87 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGASNIEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
            NTV  ++ ++ +K A K R+ A+++A
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|320095650|ref|ZP_08027309.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977423|gb|EFW09107.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 216

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 9/156 (5%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +E       ++    L   V  +  + ++        Y + +   + +   +  +     
Sbjct: 68  AEVASACQDVEGLRFLALSVSDSAEDVVSVIRAGARGYVTKSISPSDLVEAINRVAGGDA 127

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVIL 210
                       LA +  + F + +V     +   L+ RE E +  I+ G T  E+A  L
Sbjct: 128 AFSP-------RLAGFVLDAFGTGEVSTTDSELDLLSAREQEVMRLIARGYTYKEVAHDL 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  ++++++RK     R     +A++ +IV
Sbjct: 181 FISIKTVETHVSAVLRKLQLSNRHELTRWAMQRHIV 216


>gi|313837084|gb|EFS74798.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314927887|gb|EFS91718.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971857|gb|EFT15955.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328907346|gb|EGG27112.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 210

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G LA   A    +          LT RE++ L   + G ++ +IA  L +S  TV  +++
Sbjct: 128 GALAPAVATRLMAR--MRSPQTSLTARELDVLEASAGGLSNAQIAQSLVVSEATVKTHLS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +RS A+A A    ++
Sbjct: 186 HIYTKLGVTSRSAAVAKARDIGLI 209


>gi|300855110|ref|YP_003780094.1| putative regulatory protein [Clostridium ljungdahlii DSM 13528]
 gi|300435225|gb|ADK14992.1| predicted regulatory protein [Clostridium ljungdahlii DSM 13528]
          Length = 885

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 8/167 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L+  +  S+K+K    L     +F     +  +          +   + +    +R+ L+
Sbjct: 721 LLNKILASDKEKDNKNLIIRAYIFRSEILSQKDQYENATKDLRQALIIGYKSGFVRLFLI 780

Query: 146 LLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
               K R IL   +  +        +  Y   +   Y         ++ RE E L  I +
Sbjct: 781 K-QTKARKILIKTIKSMKFNKDYYEMGDYLNKILSLYSTKEDSQI-ISKREREVLMLIEK 838

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L I+ +T  ++I +I  K + + R  A+A A    I+
Sbjct: 839 GAKNSEIAKRLFITESTAKSHILNIFSKLSVRNRIEAVAKAKEIGII 885


>gi|289645094|ref|ZP_06477121.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289505091|gb|EFD26163.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 421

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E L  ++ GKT+ +IA  L ++  TV +++  I+RK     R+ A+A 
Sbjct: 349 LTPRECEVLRSLASGKTNAQIASSLFVTEGTVKSHVKHILRKLGAANRTDAVAR 402


>gi|260655487|ref|ZP_05860975.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi
           E3_33 E1]
 gi|260629935|gb|EEX48129.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi
           E3_33 E1]
          Length = 212

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   + G +S E+A  L IS  TV  ++AS+  K     ++ A+  A+++ +
Sbjct: 145 LSPREREVLLCAARGLSSKEVAAQLYISERTVQTHLASVYDKLGAHNKTEAMLLALKHGL 204


>gi|251795693|ref|YP_003010424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
 gi|247543319|gb|ACT00338.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
          Length = 866

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           PE        + +  +  F+       L         +LR+R+ E G  A+Y        
Sbjct: 744 PEGFIRIFMDEGQALTPLFERWLSEASLDEEMAAYANLLRERISEGGWTASYAR------ 797

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            +      +LTGRE E L  I EG +++EI   L +S  TV  Y  +I  K   K R  A
Sbjct: 798 -MKDNLTVKLTGREREVLRKIGEGLSNEEIGGQLFLSTGTVKKYAYNIYEKLQVKNRVQA 856

Query: 237 IAYAVRNNIV 246
           I+ A    ++
Sbjct: 857 ISRAKEMGLL 866


>gi|83310354|ref|YP_420618.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945195|dbj|BAE50059.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 209

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 19/190 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCPVFHT 115
           G   F +       E+ ++++  +  PFD+ +    +   D    +    T +  P    
Sbjct: 30  GDDRFTVAAVTSDGERFIEAVEKT--PFDVGIIGWEMPYLDGRGVLQTLRTRVDAPRLIV 87

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
              +  P             DV R  + L       +    ++L +  +  A    +F  
Sbjct: 88  YTGSPNP-------------DVPRQAMTLGAAGFCSKREPPEQLLDTIIAVAAGRMVFPF 134

Query: 176 YDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            DV          LT RE E L  ++ G T+ ++A  L IS NTV  ++ ++  K     
Sbjct: 135 IDVSSLASDPLAGLTPRERELLAALAGGLTNQQMAGQLDISLNTVKFHLKNLYDKLGVGN 194

Query: 233 RSGAIAYAVR 242
           R+ A+A+ ++
Sbjct: 195 RAQAVAFYLK 204


>gi|85702824|ref|ZP_01033928.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
 gi|85671752|gb|EAQ26609.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
          Length = 202

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 35/75 (46%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +  +S D        LT RE + L  + +GK++ EIA  L I   TV  ++ ++ RK   
Sbjct: 127 DFLESGDTEAEGKVHLTPRETDVLVGVLDGKSNKEIARDLDIQEVTVKLHLKTLSRKLGA 186

Query: 231 KTRSGAIAYAVRNNI 245
           K R+ A   A    +
Sbjct: 187 KNRTQAAMIARDMGL 201


>gi|327403986|ref|YP_004344824.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327319494|gb|AEA43986.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 224

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  I E KT+ EIA  L I++ TV  +  ++  KT  K  +G I YA++NNI
Sbjct: 156 LSERELEIIQLICEQKTAKEIADKLFINQRTVEGHKNNMFAKTGAKNIAGLIIYAIQNNI 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|297161064|gb|ADI10776.1| two-component system regulator [Streptomyces bingchenggensis BCW-1]
          Length = 226

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G+++  IA  L IS  TV  ++   M K    +R+ A+A      +
Sbjct: 157 LTMRETEVLRHVAKGRSNSAIARELKISEATVKTHLNRAMTKLGITSRAQAVALGYECGL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|293605268|ref|ZP_06687654.1| nitrate/nitrite response regulator protein NarL [Achromobacter
           piechaudii ATCC 43553]
 gi|292816324|gb|EFF75419.1| nitrate/nitrite response regulator protein NarL [Achromobacter
           piechaudii ATCC 43553]
          Length = 221

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
             L +        +     LT  + R   G  ++       L D+      LAA   +  
Sbjct: 93  QALRDGARGYLVKNIDAEVLTSAIRRAAAGESVIAESMTAKLVDQFRGQASLAAQGKS-- 150

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                   +   LT RE + +  ++ G ++  IA  L +S +TV  ++ ++++K    +R
Sbjct: 151 ------PAERHRLTARETQIVQCLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSR 204

Query: 234 SGAIAYAVRNNI 245
                YAV + +
Sbjct: 205 VQVAVYAVEHGL 216


>gi|270489958|ref|ZP_06207032.1| putative nitrate/nitrite response regulator protein NarL [Yersinia
           pestis KIM D27]
 gi|270338462|gb|EFA49239.1| putative nitrate/nitrite response regulator protein NarL [Yersinia
           pestis KIM D27]
          Length = 240

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 18/204 (8%)

Query: 59  SHFLLVRWDL-FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTL 116
           SH +L+  D     + +  ++  D  FD+V                +P   L       +
Sbjct: 4   SHTILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSDAITEAAKFQPDVILLDLNMKGM 63

Query: 117 PENITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-- 170
               T  A    G D R   LT   AR  +  M+       +L+D   EI L    QA  
Sbjct: 64  SGLDTLKALRHNGSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAAR 123

Query: 171 ----------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
                         S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +
Sbjct: 124 GENVFSDEVIQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVH 183

Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244
           I +++RK   ++R  A    + N 
Sbjct: 184 IRNLLRKLNVRSRVAATIMYLENK 207


>gi|212638430|ref|YP_002314950.1| GerE family transcriptional regulator [Anoxybacillus flavithermus
           WK1]
 gi|212559910|gb|ACJ32965.1| Transcriptional regulator GerE family [Anoxybacillus flavithermus
           WK1]
          Length = 89

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +H  +   LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+
Sbjct: 19  IHLNQKPLLTKREREVFELLLQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAV 78

Query: 238 AYAVRNN 244
              +R  
Sbjct: 79  VELLRMG 85


>gi|49484607|ref|YP_041831.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|82751986|ref|YP_417727.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|257423874|ref|ZP_05600303.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257426557|ref|ZP_05602959.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429193|ref|ZP_05605580.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257431839|ref|ZP_05608202.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257434799|ref|ZP_05610850.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|258425065|ref|ZP_05687936.1| two-component system response regulator [Staphylococcus aureus
           A9635]
 gi|282902306|ref|ZP_06310199.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906734|ref|ZP_06314582.1| two-component system NarL family response regulator NreC
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909710|ref|ZP_06317519.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911956|ref|ZP_06319752.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282915251|ref|ZP_06323028.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282917742|ref|ZP_06325492.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920975|ref|ZP_06328693.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925881|ref|ZP_06333529.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C101]
 gi|283767476|ref|ZP_06340391.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus H19]
 gi|283959174|ref|ZP_06376615.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293497647|ref|ZP_06665501.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511227|ref|ZP_06669923.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus M809]
 gi|293549835|ref|ZP_06672507.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295428978|ref|ZP_06821600.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|81696432|sp|Q6GE42|NREC_STAAR RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|123741052|sp|Q2YZ42|NREC_STAAB RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|49242736|emb|CAG41461.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|82657517|emb|CAI81959.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|257272892|gb|EEV04994.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257276188|gb|EEV07639.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279674|gb|EEV10261.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282718|gb|EEV12850.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285395|gb|EEV15511.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257844899|gb|EEV68942.1| two-component system response regulator [Staphylococcus aureus
           A9635]
 gi|282312710|gb|EFB43114.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315390|gb|EFB45774.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C427]
 gi|282318027|gb|EFB48387.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus D139]
 gi|282320972|gb|EFB51306.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282323652|gb|EFB53968.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326284|gb|EFB56588.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282329633|gb|EFB59154.1| two-component system NarL family response regulator NreC
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596765|gb|EFC01724.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|283461355|gb|EFC08439.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus H19]
 gi|283788766|gb|EFC27593.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290918882|gb|EFD95958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096578|gb|EFE26836.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465853|gb|EFF08383.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus M809]
 gi|295126737|gb|EFG56381.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|302334020|gb|ADL24213.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|315194884|gb|EFU25272.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 217

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          +     L   +  +  G   +         D      L+  + +N 
Sbjct: 91  FHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYV---------DMKLTTSLVNEFVSNS 141

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K+
Sbjct: 142 NQDTANTSDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKS 201

Query: 233 RSGAIAYAVRNNIV 246
           +   + YA++  ++
Sbjct: 202 KPELVEYALKKKLL 215


>gi|330807408|ref|YP_004351870.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375516|gb|AEA66866.1| Putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 253

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 156 RDRLWEIGLLA-AYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGIS 213
           R  L +  L++ A Q   F             LT RE ECL   +EG T+ +IA  L  S
Sbjct: 159 RQTLGDFSLISHALQEAAFPLLGKEARACPVRLTKRERECLRLAAEGLTAADIARQLNRS 218

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             T+  ++ S M K   + R  A+  AV   ++
Sbjct: 219 LATITLHLTSAMHKLGARNRVQAVVRAVHYRLL 251


>gi|319441256|ref|ZP_07990412.1| two-component system transcriptional regulatory protein
           [Corynebacterium variabile DSM 44702]
          Length = 205

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  L+ RE E L  ++ G ++ E+A  L IS  TV  ++  I RK     R+ A+  A 
Sbjct: 141 PDLALSRRETEILRALATGASNREVASSLFISPATVKTHLIHIYRKLGVDNRTAAVTEAQ 200

Query: 242 RNNIV 246
              ++
Sbjct: 201 VRKLI 205


>gi|302549097|ref|ZP_07301439.1| LuxR family transcriptional regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302466715|gb|EFL29808.1| LuxR family transcriptional regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 981

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G+++  I   L IS  T + ++++I+ K    +R  A+A A R  +
Sbjct: 913 LTAREQEVLRLLALGRSNRRIGEELFISGKTASVHVSNILAKLGASSRGEAVAVAYREGL 972

Query: 246 V 246
           +
Sbjct: 973 I 973


>gi|297155349|gb|ADI05061.1| two-component system regulator [Streptomyces bingchenggensis BCW-1]
          Length = 237

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L     +     +    +   LT RE E L  +++G  +  +A IL IS  TV  ++
Sbjct: 137 MSRLVDICTHRTTPVEYDGSRLATLTMREAEVLKLVAKGYGNSTVAKILHISEATVKTHL 196

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
              M K    +R+ A+A +    +V
Sbjct: 197 NRAMGKLEISSRAQAVALSYEFGLV 221


>gi|222066056|emb|CAX21483.1| ppoR luxR family protein [Pseudomonas putida]
          Length = 235

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +L  Y  N             +++ RE+E L W + GKT+ ++A IL +S++TVN +I 
Sbjct: 158 AVLGEYHLNAL------CPPQPKMSKRELEVLKWSAAGKTAADVACILSLSQSTVNFHIR 211

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S++ KT+   ++GA+A A     +
Sbjct: 212 SVITKTSAANKAGAVAIAALRGWI 235


>gi|78356024|ref|YP_387473.1| two component LuxR family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218429|gb|ABB37778.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 223

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 11/216 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +I  +        + +L + V     L+V  +    Q    +   + P  ++  +++   
Sbjct: 7   LIIAEDHTLLREGLKSLLQSV---PHLIVTGEASDGQMAVDLCDRNQPELVLMDISMPRM 63

Query: 96  DK--YYNVLQRP---TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           D      ++++      +     H   E +            L        I  +     
Sbjct: 64  DGVQATRLIKKRHPEVRVLVLTVHGAGEYVYAALAAGADGYVLKDASNDEFILAVESVLG 123

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G+I L   + +  +         +S    W     LT RE E    ++EG  + EIA +L
Sbjct: 124 GKIYLSPGVSDAVVKGYLNDARGQSVSSSWET---LTPREQEIFQLVAEGYKNREIAEML 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  TV  + +++M+K    + +   A A+   I+
Sbjct: 181 VVSVKTVEKHRSNLMQKLGVHSAAELRALALERGII 216


>gi|119714199|ref|YP_919341.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526108|gb|ABL79478.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 215

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D    L+  +A + K   +        +    F      I       + +     
Sbjct: 51  EIVLMDVRMPLLDGIAATRKL--HEAQSSARIIVLTTFGLDDYVIGALRAGAHGFVLKDA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              R+   +  +     +I       + L         +       +  +LT RE + L 
Sbjct: 109 PPERLLEAIHEVGAGRGVIDPA----VTLPVIRALGTRELRPEVAARLADLTSRERDVLV 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G ++ EIA  L +   TV  ++A ++ K   + R  A+  A    +V
Sbjct: 165 LLAQGHSNAEIAARLVVGEGTVKTHVAHVLAKLGVRDRLQAVVSAFNAGVV 215


>gi|78185167|ref|YP_377602.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78169461|gb|ABB26558.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 227

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 10/154 (6%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI-----GLMLLFPKGRIIL 155
           + ++  + +        +NI+P   +       + DV R  I     G++ +   G+   
Sbjct: 73  ITEQLEQGYGINLALKVKNISPATSVLVFLHRESQDVVREAIEANVDGIIFVHSIGQSAD 132

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVIL 210
            D L  I  +A   +   K      G         L+ RE E L  + +G ++ E+A +L
Sbjct: 133 GDFLKSIRAIANGSSYYPKEVRTMAGYVKSIALAGLSDRESEVLEALCQGMSNKEMAEVL 192

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +S  T+ +++++++ K   K R+ A+  A+R  
Sbjct: 193 FVSPETIKSHVSTVIGKLGVKDRTQAVISAIRAG 226


>gi|22299408|ref|NP_682655.1| transcriptional regulator [Thermosynechococcus elongatus BP-1]
 gi|22295591|dbj|BAC09417.1| transcriptional regulator [Thermosynechococcus elongatus BP-1]
          Length = 93

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 38/59 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE++ L  ++ G T+ +IA  L IS+ TV+N+I++I+ KT ++ R   + +A+   
Sbjct: 14  LSERELQVLELVAAGLTNQDIAAKLDISKRTVDNHISNILMKTKSENRVALVRWALAWG 72


>gi|297162504|gb|ADI12216.1| LuxR family two-component response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E LT I EG T+ EI   L +S  TV N+I+ ++ K   + R  A   A
Sbjct: 151 LSTREREILTLIGEGMTNREIGKRLYLSEKTVKNHISRLLSKLGVERRVQAAVIA 205


>gi|239945267|ref|ZP_04697204.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991728|ref|ZP_04712392.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448730|ref|ZP_06588120.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351677|gb|EFE78581.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 250

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 71/236 (30%), Gaps = 12/236 (5%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           VL  +D+        L  R+D +  +            +      V     + VR     
Sbjct: 7   VLIADDQTLVRTGFRLILRADGIDVVAEAADGAEAVEGVRRTRPDV---VLMDVRMPELD 63

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
             +    + +  P         S +        RP  +    F          +   + +
Sbjct: 64  GLEATRRILAAPPAL------PSTRSGEAACADRPRVIILTTFDLDRYVYAALSAGASGF 117

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                   ++   +  +     ++       +    A   +   +          LT RE
Sbjct: 118 LLKDVTPEQLTAAVRTVRTGDALLAPAITRRLVRRFAQHGSGTAALHRDLA---SLTPRE 174

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E    ++ G ++ E+A  L ++  TV  ++A I+ K   + R  A+  A    +V
Sbjct: 175 LEVFGLLARGLSNAELAARLHLAEATVKTHVARILAKLGLRDRVQAVIVAYETGLV 230


>gi|114798675|ref|YP_760164.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114738849|gb|ABI76974.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC
           15444]
          Length = 137

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +  EL+ ++V CL W+  GKT  EIA I+  S NTV  +I + ++      R+ A+
Sbjct: 69  AEGARPAELSPQQVTCLRWVKAGKTDQEIAEIILCSVNTVRYHIKTALKDLGASNRTHAV 128

Query: 238 AYAVRNNIV 246
             A+ + ++
Sbjct: 129 VLAIEHRLI 137


>gi|142969|gb|AAA22473.1| germination protein (ttg start codon) [Bacillus subtilis]
 gi|1770055|emb|CAA99550.1| transcriptional regulator of spore coat genes [Bacillus subtilis]
          Length = 74

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|332527516|ref|ZP_08403568.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332111923|gb|EGJ11901.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 214

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 3/140 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            +      H   E++ P          L      + +  +    +G   L   +    ++
Sbjct: 76  AQSVVVTIHDDDEHLFPALQAGAFGYILKEQPRELIVEQLQRISQGEPPLSPSIARR-MM 134

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A +         +      +LT RE E L  +++G T  EI V LG+SR+T+ +Y+  I 
Sbjct: 135 AHFTQKAKPQTSLL--PHVQLTDRESEVLLRVAKGYTLPEIGVQLGLSRHTIADYVKQIY 192

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RK    +R+ A   A R  +
Sbjct: 193 RKLNVSSRAEAALEAQRLGL 212


>gi|320335412|ref|YP_004172123.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319756701|gb|ADV68458.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 213

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E L  I+ G ++  IA  LGIS +TV N+I+S++ K   + R+ A   A
Sbjct: 146 EPQEPLTPREHEVLALIARGDSNKRIAAQLGISDSTVKNHISSVLAKLQVRNRTEAALRA 205

Query: 241 VRNN 244
               
Sbjct: 206 RTLG 209


>gi|302038025|ref|YP_003798347.1| putative LuxR family response regulator [Candidatus Nitrospira
           defluvii]
 gi|300606089|emb|CBK42422.1| putative Response regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 235

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ISEG ++ +IA  L IS  TV +++ SI  K     R   +  A +  +
Sbjct: 169 LTEREREVVRLISEGLSNKDIADRLCISSITVRHHLTSIFDKLGVSNRQKLLIRAHQQGL 228

Query: 246 V 246
           V
Sbjct: 229 V 229


>gi|87199644|ref|YP_496901.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135325|gb|ABD26067.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 244

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 12/181 (6%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           +  VSSDWP DL     +       + L     +F     + P+           +  + 
Sbjct: 40  EYSVSSDWPRDLAGPHLIVLDTGKGDQLD-LQAMFKGYKASYPQARLVILAESFEFEGVM 98

Query: 135 FDVARIRIGLML-------LFPKGRIILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFE 185
              A    G ++       L    R+I          LA +  +    ++     G D  
Sbjct: 99  RAFAAGADGYIVKEIGCQSLMESLRLIALGEKVMPSALAQFLPETMERRTRPARPGPDLA 158

Query: 186 --LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E    +  G+ +  IA  LGI+  TV  ++ +I+RK   K R+ A+A+A+  
Sbjct: 159 GTLSEREIETFRRMCRGEPNKVIAQNLGITEATVKVHVKAILRKLHLKNRTQAVAWALGE 218

Query: 244 N 244
            
Sbjct: 219 G 219


>gi|29830997|ref|NP_825631.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608111|dbj|BAC72166.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 216

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D R   L   V  +  G  L+ P              L+A Y   
Sbjct: 90  VYEALHAGASGFLLKDVRRDDLVHAVRVVAAGESLVAPS---------VARRLIADYTRR 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++  V    D  LT RE E L  ++ G ++ EIA  + +S +TV  ++ +++ K A +
Sbjct: 141 GRRTAPVSGRLDV-LTARERETLLHLAHGLSNAEIAAAMVVSEHTVKTHVGNVLSKLALR 199

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 200 DRVQAVICAYETGLV 214


>gi|62249397|gb|AAX77678.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 245

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 16/192 (8%)

Query: 63  LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           + R + +Q   +D +V +      PF     + +S + K   +     E      H +  
Sbjct: 57  IYRANNYQ--HIDPVVITALNKITPFPWDEDLLVSTQLKMSKIFNLSRE------HNITN 108

Query: 119 NIT-PPAGMDNRYCSLTFDVARIRIGLML-LFPKGRIILRDRLWEIGL--LAAYQANMFK 174
             T      +N    L+  +    +  +  +    +  L+  L  I    ++ Y+  +  
Sbjct: 109 GYTFVLHDHNNNLVMLSIMIDESNVNNIDDVIENNKDKLQMTLMNIHAETISLYREMIRN 168

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D         + RE E L W S GKT  EIA+IL I   TV  +I ++++K       
Sbjct: 169 KEDERSNDKDIFSQRENEILYWASMGKTYQEIALILNIKTGTVKFHIGNVVKKLGVLNAK 228

Query: 235 GAIAYAVRNNIV 246
            AI   +   ++
Sbjct: 229 HAIRLGIELQLI 240


>gi|269139938|ref|YP_003296639.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202]
 gi|53147449|dbj|BAD52106.1| AHL-dependent transcriptional regulator [Edwardsiella tarda]
 gi|255529368|gb|ACU12619.1| AHL-dependent transcriptional regulator [Edwardsiella tarda]
 gi|267985599|gb|ACY85428.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202]
 gi|304559773|gb|ADM42437.1| EdwR [Edwardsiella tarda FL6-60]
          Length = 239

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 71/184 (38%), Gaps = 19/184 (10%)

Query: 72  QKLDSIVSSDW----PFDLVRCMALSEKDKYYNV--LQRPTEL---FCPVFHTLPENITP 122
           Q +D +V S      PF     + ++ K     +  L +  ++   +  V H     +  
Sbjct: 61  QHIDPVVISALRRVSPFLWDEKITVNSKLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAM 120

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            + M +       + +R  + ++L+    R +   R      + A      K        
Sbjct: 121 LSLMVDDRGLAEIERSRGVLQMLLIDAHERFMNGQRH-----ITAQHYCSKKEP-----I 170

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W S GKT  EIA+ILGI   TV  +I ++++K        AI   V 
Sbjct: 171 ENIFSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVE 230

Query: 243 NNIV 246
             ++
Sbjct: 231 LQLI 234


>gi|301029752|ref|ZP_07192806.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|299877440|gb|EFI85651.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|332342581|gb|AEE55915.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 190

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 109 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 168

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 169 FKKIAVKNRTQAVSWA 184


>gi|294085444|ref|YP_003552204.1| LuxR family two component transcriptional regulator [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665019|gb|ADE40120.1| two component transcriptional regulator, LuxR family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 207

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 144 LMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           L        ++   RL   G   +    A   +       KD  L+ RE E L  +  G 
Sbjct: 103 LPYSMTSDALLSALRLMASGEIFIPVSVAEHVQIAKPSTAKDTFLSKREREVLDGLLSGH 162

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ +IA  +G+S  T+  ++ S+  K   + R+ A   A+   I
Sbjct: 163 SNKQIAERIGLSEVTIKYHLKSLRSKLGARNRTHAALRAIELGI 206


>gi|284989608|ref|YP_003408162.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284062853|gb|ADB73791.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 212

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 20/177 (11%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-------FHTLPENITPPAGMDNR 129
           +V+S  P  ++  + +   D     ++R       V       + T  + +   A     
Sbjct: 43  MVASLDPDVVLMDLRMPRMDG-VAAIERLAGTHPGVRVLVLTTYDTDADIVRAVAAGATG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      + ++   +        ++          +AA   +  ++           T R
Sbjct: 102 YLLKDAPLPQLADAVRAAARGETVLAPP-------VAARLVSRLRAPAAEAP-----TAR 149

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  ++ G T+ EI   L I   TV  ++  +  K     R+ A+  AV   ++
Sbjct: 150 ELEVLAGVARGLTNAEIGRELFIGEATVKTHLLRVFAKLGVDDRTRAVMVAVERGLL 206


>gi|302540281|ref|ZP_07292623.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302457899|gb|EFL20992.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 239

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  I EG T+ +I   L +S  TV N+I+ ++ K   + R  A   A
Sbjct: 168 LSPREREILALIGEGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQAAVLA 222


>gi|152989443|ref|YP_001346571.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964601|gb|ABR86626.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 906

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 11/170 (6%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT-------FDVARI 140
           R    +++        R      P    L +             +L          V   
Sbjct: 736 RSQEAAQRLARLARSTRENGALLPARLALGQLAALYLEQGRERDALATLQQAMEGAVGGA 795

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANM----FKSYDVHWGKDFELTGREVECLTW 196
            + L  L  +    LR++L         +           +        L+GRE+  L  
Sbjct: 796 LLPLHELLVQQPEWLREQLQRFPACPGARRLRALLPEPPAEPAAVAGEVLSGRELAVLEL 855

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G ++ EI+  L IS +TV ++   I  K   + R+ A+A A    ++
Sbjct: 856 IAQGLSNQEISERLFISLHTVKSHARHINDKLGVERRTQAVARAKHMGLL 905


>gi|91794405|ref|YP_564056.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91716407|gb|ABE56333.1| two component transcriptional regulator, LuxR family [Shewanella
           denitrificans OS217]
          Length = 219

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 87/246 (35%), Gaps = 29/246 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRS--DLLARMIPLDCTVSWTMRMYALTEYVGASH 60
            EIQQ N     +          L  +    LLA    ++ T        ALT       
Sbjct: 1   MEIQQTNTAKPSKIRVGLVDDQQLVRQGIASLLALSDKIEVTWQAENGQQALT------- 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            LL    +        I+ SD    ++  ++L    +  N   +   L    F      +
Sbjct: 54  -LLASTAI-------DILLSDIRMPVMDGISLLSHIRADN--NQLPTLMLTTFDDSELFL 103

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           T      N +      + ++   + ++   G +I    L ++   A   A          
Sbjct: 104 TSLHAGANGFLLKDVSLDKLLNAIEVIAQGGVLIEPVVLNQLSQQAPINAPEVNP----- 158

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE   L +++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   
Sbjct: 159 -----LSERETSILKFMANGCSNKEIATGVFLAEGTVKNHVSNILSKLGCRDRTRAVLKG 213

Query: 241 VRNNIV 246
           +   I+
Sbjct: 214 LELGII 219


>gi|315225137|ref|ZP_07866954.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
 gi|314944820|gb|EFS96852.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
          Length = 237

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE E LT  S+G +S EIA  L IS  TVN +  +I  K   ++   AI  A R 
Sbjct: 175 FALTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDIARRK 234

Query: 244 NIV 246
            I+
Sbjct: 235 GIL 237


>gi|271966618|ref|YP_003340814.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509793|gb|ACZ88071.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D R   L   V  +  G  LL P     L DR           A+
Sbjct: 91  VFAALRAGASAFLLKDVRPAELVEAVRVVARGDALLAPSVTRRLLDRF----------AS 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +             L+ REVE L  ++   ++ EIA  L ++  TV  ++++++RK   +
Sbjct: 141 VLPDPAGPPADLGRLSEREVEVLRLVALALSNAEIAERLVLTEATVKTHVSAVLRKLGLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 201 DRVQAVVLAYDVGLV 215


>gi|160879389|ref|YP_001558357.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428055|gb|ABX41618.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 207

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++LT +E E LT ++EG ++ EIA ++ +S  TV NY++++M K   + R+ A  +  + 
Sbjct: 146 YQLTKKEYELLTMVAEGLSNKEIADVMFLSEGTVRNYLSNLMLKLDVRDRTQAAIFYYKQ 205


>gi|331646293|ref|ZP_08347396.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M605]
 gi|320196482|gb|EFW71105.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli WV_060327]
 gi|330910850|gb|EGH39360.1| transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli AA86]
 gi|331045045|gb|EGI17172.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M605]
          Length = 216

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 ILRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
            NTV  ++ ++ +K A K R+ A+++A
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|296271341|ref|YP_003653973.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296094128|gb|ADG90080.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 228

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            F +L    +           L         G   L+P              L+  Y A 
Sbjct: 104 FFESLKAGASGYVLKSVADRDLLEACRAAMRGEPFLYPGAV---------TALIRDYLAR 154

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +   V    D  LT RE E +  I+EG +S EIA  L IS  TV+ + A+++ K   +
Sbjct: 155 ARRGERV---PDSVLTPREEEIVKLIAEGYSSKEIAETLQISVKTVDRHRANVLAKLGMR 211

Query: 232 TRSGAIAYAVRNNIV 246
            R     YA+R  +V
Sbjct: 212 DRLELTRYAIRAGLV 226


>gi|170738018|ref|YP_001779278.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169820206|gb|ACA94788.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 312

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              + F LT RE E L W+S GKT+ +I  ILGI+  TVN ++  + RK   +TR
Sbjct: 244 ALAERFGLTMREAEVLLWVSHGKTNRDIGDILGIAARTVNKHLEHLFRKLHVETR 298


>gi|300859427|ref|YP_003784410.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686881|gb|ADK29803.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302207104|gb|ADL11446.1| Two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis C231]
 gi|302331665|gb|ADL21859.1| Two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis 1002]
 gi|308277359|gb|ADO27258.1| Two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 212

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ +I  +L +S  TV +++  I  K   ++R+ A+A A    +
Sbjct: 152 LTPRELEVLKLVAGGSSNRDIGRVLLLSEATVKSHLVHIYDKLGVRSRTSAVAIAREQGV 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|296536416|ref|ZP_06898516.1| LuxR family DNA-binding response regulator [Roseomonas cervicalis
           ATCC 49957]
 gi|296263266|gb|EFH09791.1| LuxR family DNA-binding response regulator [Roseomonas cervicalis
           ATCC 49957]
          Length = 308

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P +   P+   LP  +    G   R   +     R     +     G+I   + L  +  
Sbjct: 176 PEDEDSPLLLRLPGWLPLAEGEAPRLPPVALSDGR----QVEFHHVGQIGPEELLLRVTA 231

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA          +        LT RE E L WI  GK + +IA IL +S  TVN ++  I
Sbjct: 232 LA------PGREESVLRDRLGLTAREAEVLLWIGRGKANRDIAEILVMSPRTVNKHLEGI 285

Query: 225 MRKTATKT 232
             K   + 
Sbjct: 286 FAKLGVEN 293


>gi|113867436|ref|YP_725925.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113526212|emb|CAJ92557.1| transcriptional regulator, LuxR-family containing alpha/beta
           hydrolase domain [Ralstonia eutropha H16]
          Length = 378

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 38/80 (47%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L   +A +  +  V       LT RE + +  I++G+ + +IA  L +   TV N+I SI
Sbjct: 293 LDEVRAFLPATEPVRDPAFSALTRRERDIVELIAQGRDNAQIAAHLDLCEKTVRNHITSI 352

Query: 225 MRKTATKTRSGAIAYAVRNN 244
             K   + R+ AI  A +  
Sbjct: 353 FAKLEVENRAQAIVLARKAG 372


>gi|119714214|ref|YP_919356.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119526123|gb|ABL79493.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 567

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E L  + EG ++ EIA  L IS  T  +++ +I+ K   ++R+ A AYA+ +
Sbjct: 497 LSRREQEVLGLVVEGLSNAEIAERLFISVKTAGHHVGNILTKLGVRSRTEATAYALLH 554


>gi|46201969|ref|ZP_00054016.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 209

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 19/190 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCPVFHT 115
           G   F +       E+ ++++  +  PFD+ V    +   D    +    + +  P    
Sbjct: 30  GDERFTVAAVTSDGERFIEAVEKT--PFDVGVIGWEMPYLDGRGVLQTLRSRVDAPRLIV 87

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
              +  P             DV R  + L       +    ++L +  +  A    +F  
Sbjct: 88  YTGSPNP-------------DVPRQAMTLGAAGFCSKREPPEQLLDTIIAVAAGRMVFPF 134

Query: 176 YDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            DV          LT RE E L  ++ G T+ ++A  L IS NTV  ++ ++  K     
Sbjct: 135 IDVSSLASDPLAGLTPRERELLAALAGGLTNQQMAGQLDISLNTVKFHLKNLYDKLGVGN 194

Query: 233 RSGAIAYAVR 242
           R+ A+A+ ++
Sbjct: 195 RAQAVAFYLK 204


>gi|317122922|ref|YP_004102925.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315592902|gb|ADU52198.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 259

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              D        LT R+ E L  ++EG ++ EIA  L +S  TV N ++ I  +   + R
Sbjct: 172 PPRDPRLDGPEPLTARQREVLELLAEGLSNREIAARLHLSEGTVKNVVSEIYARLQVRDR 231

Query: 234 SGAIAYA 240
             A+  A
Sbjct: 232 VQAVLRA 238


>gi|271965002|ref|YP_003339198.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508177|gb|ACZ86455.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +     D R  +L   V  +  G   L P             G+ A     
Sbjct: 92  VVAAIRAGASGYLTKDVRPAALAQAVCDVASGTSALTP-------------GVAATILDL 138

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +           LT REVE    ++ G+++ EI   L +S NTV +++ ++++K   +
Sbjct: 139 VRQVPIRRTAALDGLTPREVEIFGLLARGRSNSEICAELVLSENTVKSHVRAVLQKLDLR 198

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+ +A  N +V
Sbjct: 199 DRVHAVIHAYENGLV 213


>gi|21222522|ref|NP_628301.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256786408|ref|ZP_05524839.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|8052435|emb|CAB92376.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 222

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +      R   L    F       +      + +         +  G+  +   
Sbjct: 62  GIEATRRIVAGGGRSRVLILTTFDLDEYAYSGLRAGASGFLVKDALPEELLSGIRAVATG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++         LL AY  ++        +      +   LT RE E L  + +G T+ 
Sbjct: 122 DAVVAPSLTRR--LLDAYVHHLPAAGTRDHTPGSPDPRLSPLTERETEILRVMGQGWTNT 179

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L ++ +TV  ++  I+ KT ++ R  A+  A    +V
Sbjct: 180 EIAERLHLAESTVKTHVGRILAKTGSRDRVQAVILAYETKLV 221


>gi|317482156|ref|ZP_07941179.1| luxR family Bacterial regulatory protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916390|gb|EFV37789.1| luxR family Bacterial regulatory protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 232

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|217978486|ref|YP_002362633.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217503862|gb|ACK51271.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 209

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R++  L  +S GK++ EIA  L IS  TV  +I +I RK    TR+ AI 
Sbjct: 145 LTPRQLAVLGLLSAGKSNKEIARALSISDLTVKVHITTIFRKLGVATRTQAIV 197


>gi|170682157|ref|YP_001744145.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           SMS-3-5]
 gi|191172365|ref|ZP_03033906.1| transcriptional regulator CsgD [Escherichia coli F11]
 gi|312968892|ref|ZP_07783099.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 2362-75]
 gi|170519875|gb|ACB18053.1| transcriptional regulator CsgD [Escherichia coli SMS-3-5]
 gi|190907249|gb|EDV66847.1| transcriptional regulator CsgD [Escherichia coli F11]
 gi|312286294|gb|EFR14207.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 2362-75]
 gi|320178529|gb|EFW53494.1| Transcriptional regulator CsgD for 2nd curli operon [Shigella
           boydii ATCC 9905]
 gi|323174844|gb|EFZ60459.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli LT-68]
 gi|323185839|gb|EFZ71200.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1357]
 gi|333005785|gb|EGK25303.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-218]
          Length = 190

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 109 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 168

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 169 FKKIAVKNRTQAVSWA 184


>gi|77459476|ref|YP_348983.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77383479|gb|ABA74992.1| putative luxR family response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 201

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+ E L  I++GKT+ EIA  L IS  TV  +++S++R     +R+ A   
Sbjct: 143 LTPRQQEVLRLIAQGKTNKEIARELDISPFTVRIHVSSLLRVLNVPSRAAAAVK 196


>gi|94985596|ref|YP_604960.1| LuxR family transcriptional regulator [Deinococcus geothermalis DSM
           11300]
 gi|94555877|gb|ABF45791.1| transcriptional regulator, LuxR family [Deinococcus geothermalis
           DSM 11300]
          Length = 197

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 36/69 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +    D  LT RE + L  ++ G ++   A  LG+S +TV  ++ ++  K   ++R+ A+
Sbjct: 127 LPLSGDVTLTPRERDVLALLAAGLSNKRAARELGVSESTVKFHVQAVYSKLGVQSRAAAV 186

Query: 238 AYAVRNNIV 246
              ++  ++
Sbjct: 187 TRGIQLGLL 195


>gi|94314355|ref|YP_587564.1| LuxR family LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93358207|gb|ABF12295.1| ATP-dependent transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 904

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           A     +  L  D    RIG +L      +          +LA +   + ++        
Sbjct: 770 AACAEGFARLLLDEGGNRIGPLLAQFSRTLESSGGAQRDPVLAEFVMRLVQACGPLEESP 829

Query: 184 FE-----------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT +E+  L  ++EG ++  IA  L +S +TV  ++ +I  K    +
Sbjct: 830 EPIAGDRPQLLDPLTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRTHLRNINNKICAHS 889

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+A A R  ++
Sbjct: 890 RTQAVAIARRLGVI 903


>gi|291297909|ref|YP_003509187.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567129|gb|ADD40094.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 134

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDFELTGREV 191
           +AR  + ++      R +    +    L+ A  A     ++ K+  +       L+ RE 
Sbjct: 19  IARSAVHIVREARASRRLEPLSIDGRMLVNAVVALGIDLDVPKTVSIPASLRRGLSERET 78

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  I+ GK++ EI   L I+ +TV  +   + RK   + R+ A+A A R  I+
Sbjct: 79  QVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAEAFRIGIL 133


>gi|15925381|ref|NP_372915.1| response regulators of two-component regulatory [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927969|ref|NP_375502.1| hypothetical protein SA2179 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21284042|ref|NP_647130.1| hypothetical protein MW2313 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487173|ref|YP_044394.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650934|ref|YP_187192.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|87162341|ref|YP_494972.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|148268828|ref|YP_001247771.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394900|ref|YP_001317575.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151222503|ref|YP_001333325.1| transcriptional regulator DegU family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980706|ref|YP_001442965.1| hypothetical protein SAHV_2375 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510583|ref|YP_001576242.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141331|ref|ZP_03565824.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253314728|ref|ZP_04837941.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253730063|ref|ZP_04864228.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734193|ref|ZP_04868358.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255007165|ref|ZP_05145766.2| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794731|ref|ZP_05643710.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|258407411|ref|ZP_05680554.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|258422261|ref|ZP_05685173.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|258439653|ref|ZP_05690399.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|258442790|ref|ZP_05691350.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258446510|ref|ZP_05694665.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258450373|ref|ZP_05698465.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224]
 gi|258451304|ref|ZP_05699337.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|258455251|ref|ZP_05703211.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|262048801|ref|ZP_06021682.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30]
 gi|262051545|ref|ZP_06023766.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3]
 gi|282893837|ref|ZP_06302069.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A8117]
 gi|282920376|ref|ZP_06328099.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A9765]
 gi|282928424|ref|ZP_06336025.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A10102]
 gi|284025411|ref|ZP_06379809.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848934|ref|ZP_06789679.1| two-component system [Staphylococcus aureus A9754]
 gi|295405079|ref|ZP_06814892.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819]
 gi|296276000|ref|ZP_06858507.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297209789|ref|ZP_06926185.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297244136|ref|ZP_06928026.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796]
 gi|300910801|ref|ZP_07128251.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304379589|ref|ZP_07362322.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81693835|sp|Q5HDG5|NREC_STAAC RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81696270|sp|Q6G6T0|NREC_STAAS RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81704173|sp|Q7A029|NREC_STAAW RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81705142|sp|Q7A3U5|NREC_STAAN RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81855884|sp|Q99RN8|NREC_STAAM RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|123735950|sp|Q2FEA6|NREC_STAA3 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829240|sp|A7X623|NREC_STAA1 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829241|sp|A6U4C0|NREC_STAA2 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829243|sp|A5IVH2|NREC_STAA9 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829244|sp|A6QJN1|NREC_STAAE RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829245|sp|A8Z580|NREC_STAAT RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829309|sp|Q2FVM7|NREC_STAA8 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|13702340|dbj|BAB43481.1| SA2179 [Staphylococcus aureus subsp. aureus N315]
 gi|14248165|dbj|BAB58553.1| response regulators of two-component regulatory [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21205485|dbj|BAB96178.1| MW2313 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245616|emb|CAG44095.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285120|gb|AAW37214.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|87128315|gb|ABD22829.1| transcriptional regulator, DegU family [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|147741897|gb|ABQ50195.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947352|gb|ABR53288.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150375303|dbj|BAF68563.1| transcriptional regulator DegU family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722841|dbj|BAF79258.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369392|gb|ABX30363.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726276|gb|EES95005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727888|gb|EES96617.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257788703|gb|EEV27043.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|257840923|gb|EEV65374.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|257841692|gb|EEV66129.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|257847429|gb|EEV71431.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|257851911|gb|EEV75845.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257854578|gb|EEV77526.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257856465|gb|EEV79374.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224]
 gi|257861096|gb|EEV83911.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|257862462|gb|EEV85230.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|259160529|gb|EEW45552.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3]
 gi|259163059|gb|EEW47620.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30]
 gi|282589819|gb|EFB94903.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A10102]
 gi|282594322|gb|EFB99308.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A9765]
 gi|282763895|gb|EFC04023.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A8117]
 gi|285818052|gb|ADC38539.1| Two-component response regulator [Staphylococcus aureus 04-02981]
 gi|294824313|gb|EFG40737.1| two-component system [Staphylococcus aureus A9754]
 gi|294970024|gb|EFG46042.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819]
 gi|296885462|gb|EFH24399.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297178914|gb|EFH38159.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796]
 gi|300887781|gb|EFK82976.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304341765|gb|EFM07671.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315128595|gb|EFT84599.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315197413|gb|EFU27750.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139097|gb|EFW30979.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142526|gb|EFW34335.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329723454|gb|EGG59983.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21172]
 gi|329726678|gb|EGG63139.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21189]
 gi|329730103|gb|EGG66493.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21193]
          Length = 217

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          +     L   +  +  G   +         D      L+  + +N 
Sbjct: 91  FHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYV---------DMKLTTSLVNEFVSNS 141

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K+
Sbjct: 142 NQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKS 201

Query: 233 RSGAIAYAVRNNIV 246
           +   + YA++  ++
Sbjct: 202 KPELVEYALKKKLL 215


>gi|238920403|ref|YP_002933918.1| csgAB operon transcriptional regulatory protein [Edwardsiella
           ictaluri 93-146]
 gi|238869972|gb|ACR69683.1| probable csgAB operon transcriptional regulatory protein
           [Edwardsiella ictaluri 93-146]
          Length = 206

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           I +       + ++R RL  + + A  +   + +          LT RE+E L  + +G 
Sbjct: 109 IAVFPAKTHQQALIR-RLRTLLMAAQEEGPGYMTPTPR------LTLRELEVLKAMQQGA 161

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ +I+ IL IS+NTV  ++ +I +K + K R  A+ +A
Sbjct: 162 SNLDISRILYISKNTVRTHVYNIFKKISVKNRIQAVIWA 200


>gi|170768176|ref|ZP_02902629.1| transcriptional regulator CsgD [Escherichia albertii TW07627]
 gi|170122942|gb|EDS91873.1| transcriptional regulator CsgD [Escherichia albertii TW07627]
          Length = 216

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|21223862|ref|NP_629641.1| regulatory protein [Streptomyces coelicolor A3(2)]
 gi|4467257|emb|CAB37582.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 1091

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 2/154 (1%)

Query: 93   SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKG 151
            SE    +  L+RP +L   V + L + +    G D R   +    +AR     +   P  
Sbjct: 927  SEAVTAFECLERPYDLAR-VRYRLADALLAAGGDDERARATELLRLARTVADHLGARPLS 985

Query: 152  RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
              +          L      +  S          LTGRE + L  +S+G+T+ +IA  L 
Sbjct: 986  DAVAVLGRRARLTLGRAAGPVPASGPADPADALGLTGRERDVLRLVSDGRTNRQIAEELF 1045

Query: 212  ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS  T + ++++I+ K     R  A A A R  +
Sbjct: 1046 ISPKTASVHVSNILAKLGVSGRGEAAAVAHRLAL 1079


>gi|269838263|ref|YP_003320491.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787526|gb|ACZ39669.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 875

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  +++G ++ EIA  L +S  TV ++++SI+ K    +R  AI  A R 
Sbjct: 804 LTRREAEVLDLMAQGLSNTEIAGRLYLSPKTVEHHVSSILTKLNVSSRHEAIRVAERR 861


>gi|226228720|ref|YP_002762826.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091911|dbj|BAH40356.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 210

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE+E L  +++G ++ +IA+ LG + +T+  ++ +I++K  T  R+ A+  A+
Sbjct: 143 PRVALTARELEVLELMAQGLSNPDIAIRLGRAESTMKVHVRNILQKLGTDDRTAAVTTAL 202

Query: 242 RNNIV 246
           R  I+
Sbjct: 203 RRGII 207


>gi|300933089|ref|ZP_07148345.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 212

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 17/187 (9%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSE---KDKYYNVLQRPTELFCP-VFHTLPEN 119
           VR  L  +++   +V  D  F        +      +    L R  ++     + T  E 
Sbjct: 39  VRASLAGDEEPVDVVLMDLRFSQQVGAGEAGGVYATRAIRALPRAPQVLVVTNYSTDGEV 98

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +   +     Y         +  G+        ++    + ++              D  
Sbjct: 99  VGAVSAGAVGYLLKDCPPTELTDGIRKAARGESVMSSQVMGKLM-------------DSM 145

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE++ L     G+++ +IA  L ++  T+ +++  +  K     R+ A+A 
Sbjct: 146 NRPMETLTAREIDVLRLAGLGRSNRQIAKELVLTEATIKSHMGRVFTKLGVSNRTAAVAV 205

Query: 240 AVRNNIV 246
           A    I+
Sbjct: 206 ARERGIL 212


>gi|240172655|ref|ZP_04751314.1| transcriptional regulator, LuxR family protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 968

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT RE+E L  ++ G ++  I   L IS NT  N++ SI+ KT    R+ A  
Sbjct: 900 DLAGPDGLTDREIEVLRLLAAGLSNRAIGERLYISTNTAANHVRSILIKTGAANRTQAAM 959

Query: 239 YAVRNNIV 246
           YA  + ++
Sbjct: 960 YAADHQLL 967


>gi|239940650|ref|ZP_04692587.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291444087|ref|ZP_06583477.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291347034|gb|EFE73938.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 224

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 7/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +A +        L     +    F      +       + +     
Sbjct: 46  DVVLMDIRMPGTDGLAATRMISADPELAAVRVVMLTTFEVDEYVVQSLRAGASGFLGKGA 105

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190
           +   +   + +      ++        GL+A + A    S +     ++      LTGRE
Sbjct: 106 EPDELLNAIRIAAAGEALLSPAATK--GLIATFLAQGGSSQEGPDSAEYAERLAALTGRE 163

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++ G  +D IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 164 REVLVQVAGGHPNDRIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 219


>gi|288572878|ref|ZP_06391235.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568619|gb|EFC90176.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 216

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 8/174 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV----FHTLPENITPPAGMDNRYC 131
            I     P   V  + +          +R  +L   V     H+    +        R  
Sbjct: 41  DIAEELRPHVAVMDIVMPGMGG-IEATRRLRKLGVAVVALSMHSDRHFVVEMFRAGARAF 99

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
            L        +G +    +G   L   + E GL      +          +  ELT RE 
Sbjct: 100 LLKDCATDELVGAIRAVVEGEAYLGPSI-ERGL--GMDLSSLDYLIAEEDQRMELTPREW 156

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L  ++EG+++ EIA  L +S  TV N+  S+M K      +    YA+R  +
Sbjct: 157 EILQLVAEGRSTREIASSLNLSAKTVENHRQSVMNKLDLHNVADLTKYAIRCGL 210


>gi|42524246|ref|NP_969626.1| two-component response regulator-like protein [Bdellovibrio
           bacteriovorus HD100]
 gi|39576454|emb|CAE80619.1| two-component response regulator homolog [Bdellovibrio
           bacteriovorus HD100]
          Length = 226

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E +  I++GKT+ E+A  L  S +T+  +  ++MRK           +A++ N+
Sbjct: 166 LTPRELEVVRMIAQGKTNKEVAACLECSEHTIKTHKTNVMRKLNLSNAVEISVWALKRNL 225


>gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 225

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 76/199 (38%), Gaps = 22/199 (11%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107
           +Y+    + ++  +  +E     I+  + P  ++  + + E D Y   +++  +      
Sbjct: 37  DYLEFRGYEVITAENGREAL--EILEHEVPDMIICDVMMPEMDGY-TFVEQVRQNERTSW 93

Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              LF        + +       + Y    F+   +   +         + +   W+   
Sbjct: 94  IPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTIRWKEHQ 147

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
               +             D +LT  E++ + +++ G  + EIA  L +S+ TV ++++++
Sbjct: 148 TKGGENGSRIQVPF----DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 203

Query: 225 MRKTATKTRSGAIAYAVRN 243
           + KT    R+    +A+ N
Sbjct: 204 LGKTNLHNRTELARWAIEN 222


>gi|296102946|ref|YP_003613092.1| sgAB operon transcriptional regulatory protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057405|gb|ADF62143.1| sgAB operon transcriptional regulatory protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 216

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N    +T +  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYVTEEENRVVEGLQGILRGECYFSQK-------LASYLITHSGNYRYNSSESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|258592846|emb|CBE69155.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 237

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I++G    EIA  L +S  TV N+ A I +K     R+  + YA+R ++
Sbjct: 175 LTLRETQVLQHIAQGLPDREIAESLQLSVRTVENHAARIRKKLQVDNRTALVRYALRAHL 234

Query: 246 V 246
           +
Sbjct: 235 I 235


>gi|282863904|ref|ZP_06272961.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560982|gb|EFB66527.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 231

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 12/168 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCS 132
           P  L+  + +  +D  + + +          R   L    F              + +  
Sbjct: 61  PDVLLMDIRMPRRDGLWALAELGRRGLLGPGRSRVLMLTTFDLDAYVDDALTAGASGFLL 120

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                 ++   +         +       I  +  + +   +  D    +  +LT REV+
Sbjct: 121 KNSSYEQLTEAVRAAAAGHSALSPAVTRRI--IEGHLSGRPRPSDQELARLRDLTEREVD 178

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L  I +G ++ EIA  L +S +TV  +++ ++ KT  ++R+ A   A
Sbjct: 179 VLRLIRDGLSNAEIAGELVVSLHTVKTHVSRVLMKTGCQSRAQAAVLA 226


>gi|145596642|ref|YP_001160939.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305979|gb|ABP56561.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 235

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 6/162 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143
           +R   +   +    +++   E    V  T  E+      +      +      +  I   
Sbjct: 56  LRMPGMGGIEATGQIVRLSPETRVLVLTTFDEDDHVFGALQAGAAGFLIKNMSLDDILDA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++          L  +  +   +  V       +T RE E LT +  G ++
Sbjct: 116 VRTVAHGNGLLAPSVTRR---LIKHVVDTRTAPTVPRRPLSGITEREREVLTLVGRGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV  YI  ++ K   + R   +  A    +
Sbjct: 173 SEIADELRLSHATVKTYITRLLSKLGARDRVHLVIAAYEAGL 214


>gi|117927574|ref|YP_872125.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648037|gb|ABK52139.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 199

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE + L  +S G ++ EI   L +S +T+  +   + RK     R+ A+A  +R
Sbjct: 135 DVPLTERERQVLDGMSRGMSNYEIGRELFLSEDTIKTHARRLFRKLGATDRAQAVALGIR 194

Query: 243 NNIV 246
             +V
Sbjct: 195 AGLV 198


>gi|94971954|ref|YP_593994.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554005|gb|ABF43920.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 208

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 62/181 (34%), Gaps = 32/181 (17%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP--------------VFHTLPENIT 121
            +V    P  ++  + + E D       R  EL  P              V   +    +
Sbjct: 42  RLVQDLRPDVVLMDVQMPELDG-VRATARIRELGLPSRVLILTTFDTEGYVLDGIRAGAS 100

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                D R   L   V R+  G + + P            + LL   Q            
Sbjct: 101 GYLLKDMRPTELFDVVRRVAAGELFIQPSVAS------KYLHLLTTRQLGAEH------- 147

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE + L  ++ G ++  IA  L IS +TV N++ SI+ K   + R+ A   A 
Sbjct: 148 ----LSPREEDVLRLLARGLSNKAIARDLAISESTVKNHVKSILAKMQVRNRTEAALNAS 203

Query: 242 R 242
           R
Sbjct: 204 R 204


>gi|313497133|gb|ADR58499.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 905

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 16/196 (8%)

Query: 60  HFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           H LL      Q+  LD I + SD   D V+ +A   K    N       +      +   
Sbjct: 716 HPLLPLHIALQQASLDRIQLRSD---DAVQRLACLVKRGQANGG----MMLTVSALSQWL 768

Query: 119 NITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGRIILRDRLWEIGLL---AAYQA 170
           ++    G + +   L   +     G     +  L  K    L ++L         A    
Sbjct: 769 SLLLDEGKEGQAAQLLPSLLEAAHGGVMQPMQPLLEKHPQWLHEQLQAGAACPVQAELLK 828

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++        G    L+GRE+  L  I++G ++ +I+  L IS +TV  + + I  K   
Sbjct: 829 HLPPVPVASTGNGEALSGREMAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGV 888

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+ A+A A    ++
Sbjct: 889 ERRTQAVAKAKFLGLL 904


>gi|302547140|ref|ZP_07299482.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464758|gb|EFL27851.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 178

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 36/76 (47%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G L  +   M   +         LT RE E L  + +G  + EIA  LG+S  TV  +++
Sbjct: 98  GALLRFTRAMLPRHLSAVPTHAPLTSRESEVLQLVRKGMANKEIARRLGLSEKTVKFHVS 157

Query: 223 SIMRKTATKTRSGAIA 238
           +++ K    +R+  IA
Sbjct: 158 NVLAKAHVASRAQLIA 173


>gi|228993223|ref|ZP_04153144.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442]
 gi|229006827|ref|ZP_04164460.1| Spore germination protein gerE [Bacillus mycoides Rock1-4]
 gi|229087050|ref|ZP_04219202.1| Spore germination protein gerE [Bacillus cereus Rock3-44]
 gi|228696243|gb|EEL49076.1| Spore germination protein gerE [Bacillus cereus Rock3-44]
 gi|228754449|gb|EEM03861.1| Spore germination protein gerE [Bacillus mycoides Rock1-4]
 gi|228766549|gb|EEM15191.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442]
          Length = 74

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|254393534|ref|ZP_05008669.1| luxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294811039|ref|ZP_06769682.1| LuxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326439619|ref|ZP_08214353.1| luxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197707156|gb|EDY52968.1| luxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294323638|gb|EFG05281.1| LuxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              ++ D    +   LT RE E L  I EG T+ +I   L ++  TV N+I+ ++ K   
Sbjct: 149 RAPRTPDPEADRLGGLTEREREILELIGEGLTNRQIGARLYLAEKTVKNHISRLLAKLGV 208

Query: 231 KTRSGAIAYAVRNNI 245
           + R  A   A +  +
Sbjct: 209 ERRIQAAVLATQFRL 223


>gi|108760620|ref|YP_631897.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK
           1622]
 gi|108464500|gb|ABF89685.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK
           1622]
          Length = 223

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 65/162 (40%), Gaps = 9/162 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLL 147
            ++       V +R  E+   +  +  +       +    + Y        +IR G+  +
Sbjct: 63  GINGIQVTQRVKRRAPEVEILILTSFDDETKVYEAIQAGASGYLVKRVGPEKIRSGIQEV 122

Query: 148 FPKG---RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              G     I+  R W      + QA   ++ +      + LT  E E L ++++G ++ 
Sbjct: 123 MEGGTVLEPIIAKRFW--NYFQSVQAKSTQA-EKKLENPWALTPLEFEVLRYVAKGLSNA 179

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+  ++ + R TV  +++ I RK    +   A+  A+R  +V
Sbjct: 180 EVGHVMTLERRTVRTHLSHIYRKMGVNSHVEAVVMALRAGVV 221


>gi|254505671|ref|ZP_05117817.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
 gi|219551324|gb|EED28303.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
          Length = 222

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201
           + LL      I+ D +W    +A      F+  +          LT RE E +  +  G 
Sbjct: 114 ISLLIKGMEKIMNDEMWLSRKVAQDYIEYFRCANTVTTSQAYANLTKREKEIMRLLGHGA 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A
Sbjct: 174 SNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|209964999|ref|YP_002297914.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
 gi|209958465|gb|ACI99101.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
          Length = 214

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 68/185 (36%), Gaps = 12/185 (6%)

Query: 64  VRWDLFQEQKLDSIVS---SDWPFDLV-RCMALSEKDKYYNVLQRPT-ELFCPVF----- 113
              + F+    D ++     D  FDL+   + +     +  + Q    +   PV      
Sbjct: 25  ADANFFEAGTFDEVMELCQGDQDFDLILMDLQMPSWPGFPGIQQICEIQAGTPVVIVSAS 84

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
            +  +         + Y   +  V  +   L L+F  G  +    +   G  +   A   
Sbjct: 85  ESQSDVRAALDAGASGYIPKSSSVKIMLSALNLVFSGGIYVPPAAIQGEGQSSGSAAQG- 143

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                       LT R+ + L  + EGK++ +IA  LG+S  TV  ++ ++MR    + R
Sbjct: 144 -GGHASGPGMPALTQRQRDVLRCLREGKSNKQIAYELGLSEGTVKIHVTAVMRSLGVRNR 202

Query: 234 SGAIA 238
           + A+ 
Sbjct: 203 TQAVI 207


>gi|197658985|emb|CAR47858.1| putative DNA binding response regulator [Rhodococcus sp. PY11]
          Length = 222

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L   + G T+ +IA  L +S  TV  ++ +   K     R+ A+A A+R  +
Sbjct: 161 LTPRELDVLRLAATGLTTSQIAGKLHVSVPTVKTHLRNTYDKLDASDRTAAVAQALRLGL 220

Query: 246 V 246
           +
Sbjct: 221 L 221


>gi|163938916|ref|YP_001643800.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861113|gb|ABY42172.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 214

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 21/217 (9%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  + E   +  F ++      E+ L  I     P  ++  + + +    
Sbjct: 8   VDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKK-PDVILMDLNMPKMSGL 64

Query: 98  -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                L +  +   P+      N     +         Y     D        +    +G
Sbjct: 65  ETIEALNK-KQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 122

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVI 209
            I+L+  + E  +        +K  +VH  K  +  LT +E+  L  I+ G  + EIA  
Sbjct: 123 EILLQPNIMEKIV-------KYKRKEVHADKVAENNLTDKELFVLKAIARGYKNKEIAFD 175

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GI+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 176 MGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 212


>gi|302554590|ref|ZP_07306932.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472208|gb|EFL35301.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 217

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  +T RE E L  ++EG TS EI  +L IS  TV  + A++++K   + R     YA+
Sbjct: 151 PERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGMRDRLELTRYAI 210

Query: 242 RNNIV 246
           R  ++
Sbjct: 211 RAGLI 215


>gi|296140116|ref|YP_003647359.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296028250|gb|ADG79020.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 215

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 6/156 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+  DK+  +   P       F +              +     D   +   +  L   
Sbjct: 61  GLTLLDKFTRMPSPPVVAMLTTFDSDEYIAHALRRGAAGFLVKDTDPDHLVQLVRSLAEG 120

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G ++         + +   +       V       L+ RE E L  +++G ++ EI   +
Sbjct: 121 GVVLSP------KVASQVVSGFLGGVAVDDLGTERLSPREREVLVLLADGLSNLEIGRTM 174

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  TV +++++++ K     R  A   A R  ++
Sbjct: 175 HLSVGTVKDHVSALLAKLGVANRVQAALVAQRAGLL 210


>gi|17546614|ref|NP_520016.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428913|emb|CAD15597.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 252

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 24/189 (12%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D IV+ D+P + +  +          +++R      PV+    +   P A  D  + +
Sbjct: 52  LMDHIVTVDFPIEYLAAIQNVAGGIDTPLMRRWFATRSPVYF---DAAAPTAETDRVWLA 108

Query: 133 ------LTFDVARIR------IGLMLLFPKGRIILRDRLWEI---------GLLAAYQAN 171
                 L   VA         IG    F +   I    L  +           L    A+
Sbjct: 109 KFIMHDLRNAVADGIYDEGHCIGTYFSFHRLPSINAPFLTSVLRDLTPVLHRTLMRAVAD 168

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K++         L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM KT   
Sbjct: 169 TEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDKTGCA 228

Query: 232 TRSGAIAYA 240
            R G    A
Sbjct: 229 NRVGVAVLA 237


>gi|333009595|gb|EGK29047.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-272]
          Length = 216

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|307545446|ref|YP_003897925.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Halomonas elongata DSM 2581]
 gi|307217470|emb|CBV42740.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Halomonas elongata DSM 2581]
          Length = 219

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     +   + +  +G M++      +L + L         Q  
Sbjct: 96  VVAALHAGADGYLLKDMDPDDMVHQLRQAALGRMVISDSLASLLAEALRN-------QKG 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + D+H      LT RE E L  ++ G ++  IA  L I+  TV  ++  +++K   +
Sbjct: 149 QSTAPDIH-----SLTQREREILRELAAGLSNKLIARRLDITEGTVKVHVKHLLKKLNLR 203

Query: 232 TRSGAIAYAVRNNI 245
           +R  A  +AV+  I
Sbjct: 204 SRVEAAVWAVQEGI 217


>gi|298245303|ref|ZP_06969109.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552784|gb|EFH86649.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 221

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 14/163 (8%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIG 143
           VR   +S  +    +  R  ++   +  +  +    +       + Y       A +   
Sbjct: 57  VRMEKMSGIEACREIKSRDPQVNILMITSYTDERAILASTLAGASGYLLKNVSRAELLKA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++   +      L    AN  K           +T RE E L  ++ G T+
Sbjct: 117 IRRVATGASLLDPKQ--RQQALTTATANAPKE---------AITEREREVLALVARGYTN 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  T  N+++ I+ K     RS A  YAV +N+V
Sbjct: 166 KQIAEGLSMSEKTARNHVSHILEKLGLTRRSEAAVYAVEHNLV 208


>gi|261378734|ref|ZP_05983307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea
           ATCC 14685]
 gi|269144889|gb|EEZ71307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea
           ATCC 14685]
          Length = 218

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+ +N+
Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHHNV 212


>gi|171315760|ref|ZP_02904992.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia ambifaria MEX-5]
 gi|171099059|gb|EDT43839.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia ambifaria MEX-5]
          Length = 891

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 11/147 (7%)

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
           P            +     Y  +  D    RIG +L                  L  Y  
Sbjct: 744 PAAALAVMGALLKSACAEGYARILLDEGGARIGPLLRQVARTREASATATRDPALTEYVT 803

Query: 171 NMFKSY-DVHWGKDF----------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            + ++  D    +D            LT +E+  L  ++EG ++  IA  L +S +TV  
Sbjct: 804 RLTQACGDFDESEDSTAGARPQLLDPLTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRT 863

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +I  K    +R+ A+A + R  ++
Sbjct: 864 HLRNINNKVGAHSRTQAVAISRRLGVI 890


>gi|170077264|ref|YP_001733902.1| LuxR family transcriptional regulator [Synechococcus sp. PCC 7002]
 gi|169884933|gb|ACA98646.1| transcriptional regulator protein, LuxR family [Synechococcus sp.
           PCC 7002]
          Length = 91

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 40/64 (62%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  L+ RE+E +  ++ G T+ EIA  L IS+ TV+N+I++I+ KTAT  R   + +A
Sbjct: 7   ASEAALSEREIEIVDLVAAGLTNHEIAARLDISKRTVDNHISNILTKTATDNRVSLVRWA 66

Query: 241 VRNN 244
           ++  
Sbjct: 67  LQWG 70


>gi|83644295|ref|YP_432730.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
 gi|83632338|gb|ABC28305.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
          Length = 902

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           I  L+ Y A   +    H       EL+ RE   L  +S G++++EIAV L I+ +TV  
Sbjct: 816 ISELSVYSAPQTRPQRNHSNSPLMEELSQRETTILNHLSAGRSNEEIAVALNIAASTVKT 875

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +I  K   + R+ A+A A    +V
Sbjct: 876 HLRNIYAKFGVRRRTQALAIAREKGLV 902


>gi|83593514|ref|YP_427266.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576428|gb|ABC22979.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 239

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 64/187 (34%), Gaps = 18/187 (9%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            + D  Q+  L       W           E D+   + +       PV   L       
Sbjct: 67  YQIDPVQDAALLVSAPFVWSH---------EGDQSDVMARVLRAEHRPVLDYLRH----- 112

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-DRLWEIGLLA-AYQANMFKSYDV--H 179
            G+                    + P G      DRL  +GLL  ++   ++  +    H
Sbjct: 113 RGLTRGVTVPIRCGEGALATFTAIAPSGAPFPPEDRLSSLGLLGQSFHDRVYPGFPAASH 172

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE ECL    EG T+ EIA  +  S  TV  ++++  RK   + R  AIA 
Sbjct: 173 LCPVVHLTRRERECLALCGEGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIAR 232

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 233 AAYYRLL 239


>gi|330952743|gb|EGH53003.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 238

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 19/196 (9%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFH 114
            F+LV      E+            D VR +A S+   +  +L RP              
Sbjct: 53  GFVLVSGPEAGEKN-SHCAERQDVADTVRGVACSQPL-FTGLLNRPVSSNDRGEMIDAGT 110

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQA 170
           T         G +  +  L F       G       L  + + ++R+   +   L     
Sbjct: 111 TSDGMTAFYLGEEKAFSLLRFANKEAGTGNAQGEYSLATEVKSLVREFHHK---LTGLVM 167

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            + +S +     +F +T RE E   W + GKT +EIAV L IS+ TV+ +I++++ K   
Sbjct: 168 GLNESDE-----NFTITDREKEVYIWTAIGKTCNEIAVNLNISKRTVDFHISNVISKLGV 222

Query: 231 KTRSGAIAYAVRNNIV 246
           +T+  A     +  I+
Sbjct: 223 RTKLQACIQLTKMGIL 238


>gi|294635449|ref|ZP_06713937.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda
           ATCC 23685]
 gi|291091182|gb|EFE23743.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda
           ATCC 23685]
          Length = 202

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 21/196 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPE 118
           ++V       + +  ++  D  FD+      S   +   + +R      L       L  
Sbjct: 1   MIVDDHPLMRRGIRQLLELDPLFDVAA--EASSGSEAIALAERIQPDLILLDLNMKGLSG 58

Query: 119 NITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA---- 170
             T  A    G+D R   LT   AR  +  ++       +L+D   E  L   +QA    
Sbjct: 59  LDTLKALRNEGVDARIIILTVSDARSDVYALVDAGADGYLLKDSEPETLLAQIHQAAEGH 118

Query: 171 --------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                   N   +         +LT RE++ L  ++ G ++ +IA  L IS  TV  +I 
Sbjct: 119 NVFSEAVLNYLGTRSEIADPLADLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIR 178

Query: 223 SIMRKTATKTRSGAIA 238
           +++RK   ++R  A  
Sbjct: 179 NLLRKLNVRSRVAATV 194


>gi|284030392|ref|YP_003380323.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809685|gb|ADB31524.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 217

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 16/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           + H +          D  +  L   +     G  +L P     L  RL      AA Q  
Sbjct: 93  ILHAVEAGAAGYLLKDTPHAELLDGIRAASRGETVLAPPVAARLMSRLRTPAAPAAVQ-- 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                          + RE+E L  ++ G ++ EI   L I   TV  ++  +  K    
Sbjct: 151 --------------PSPRELEVLAAVARGLSNAEIGRELFIGEATVKTHLQRLFSKLDVD 196

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A+   ++
Sbjct: 197 DRTRAVTVAIERGLL 211


>gi|146307561|ref|YP_001188026.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
 gi|145575762|gb|ABP85294.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
          Length = 907

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L   Q          + ++ +++ RE E L  ++ G ++ +IA  + +S  T+  ++
Sbjct: 820 LAELLREQCRRMAIDPESFEENQDVSHREREILRLVAAGLSNRDIAQTVHLSEATIKWHL 879

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  K   ++R+ A+       ++
Sbjct: 880 HNLFSKLGVRSRTQAVLKGKSLGLL 904


>gi|159898988|ref|YP_001545235.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892027|gb|ABX05107.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 860

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 7/156 (4%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                +  N +     +   +   L      P  +     +LT     + I  +L    G
Sbjct: 710 ALTTAERINFVPLLVSIHATLAMVLARQGQLPKALTELQHALTIAEPELIIQPLLDLQAG 769

Query: 152 RIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            I L  +L    L L     N  ++ D        +T RE E L +++ G  +  IA  L
Sbjct: 770 LIPLLQQLPSSPLVLRLLHHNRLETLD------LAITPREHEILRYLAAGLGNRAIAEAL 823

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ +T+  +I+++  K     R+ AI  A    ++
Sbjct: 824 VIAESTLKRHISNLYLKLDVHNRTAAIVKAREQGLI 859


>gi|89098909|ref|ZP_01171789.1| germination protein [Bacillus sp. NRRL B-14911]
 gi|89086313|gb|EAR65434.1| germination protein [Bacillus sp. NRRL B-14911]
          Length = 74

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|315500154|ref|YP_004088957.1| two component transcriptional regulator, luxr family [Asticcacaulis
           excentricus CB 48]
 gi|315418166|gb|ADU14806.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
          Length = 239

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 6/135 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D+    L   +     G   +       L   + +   LA     
Sbjct: 109 VISALTAGADGYVLKDSAESELIGSIRHTLNGGSPISAPVAAYLLRHIRKDASLAVVAEP 168

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         +T RE+E L+ +++G +  E A +L IS +TV  ++ +I RK A  
Sbjct: 169 ELAEDAP------GITPREIELLSLLAKGLSYKEAASVLDISHHTVGTHVKAIYRKLAVN 222

Query: 232 TRSGAIAYAVRNNIV 246
           +RS A+  AVR+ ++
Sbjct: 223 SRSEAVFEAVRSGLI 237


>gi|148240284|ref|YP_001225671.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848823|emb|CAK24374.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 241

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 20/233 (8%)

Query: 31  DLLARMIPLDCTVSWTMRM--YALTEYVGASHFLLVRWDL---FQEQKLDSIVSSD---- 81
           DL A++  L         +   + T    A   LL  W +    Q   + +  S D    
Sbjct: 2   DLSAQIPLLQEQSRQGHGLLRRSRTAIATADPVLLASWTIWFEGQGPLVAACTSEDDCLG 61

Query: 82  ----WPFDLVRCMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITPPAGMDNRYCSL 133
                   L+ C  L E     ++++R      EL   +    P   T    ++   C  
Sbjct: 62  NIQSQAATLLLCTDLLESGSGISLVERALAVQPELKVLILLHRPIARTILNAIEAG-CHG 120

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              V     G +        I  D  +   L++    +             ELT RE + 
Sbjct: 121 ICAVQSAGTGAVATAFT--AIDSDGQYLDPLISGVLHHSRLPSSGQSLPLQELTMREEDV 178

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +  G +++ IA  L +S  TV ++++S++RK A K R+ A+  A R  +V
Sbjct: 179 LRGLCRGMSNEAIANDLVVSIETVKSHVSSLLRKLAAKDRTAAVVTAFREGLV 231


>gi|325283395|ref|YP_004255936.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324315204|gb|ADY26319.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 235

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 105 PTELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-- 161
             +L  PV   +                +LT  +   ++   +       +L+D   +  
Sbjct: 69  LMDLLMPVMDGIAATAEIRRCCPGTEVIALTSTLEESKVNGAVAAGATSYLLKDASSDLL 128

Query: 162 ---IGLLAAYQANMFKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILG 211
              I   A  +  +         +DF        LT +EVE L  I+ G  +  IA  L 
Sbjct: 129 NEAIHAAARGEVRLHPQAARRLVRDFRAPDMREHLTCKEVEVLQLIARGLNNKGIAAQLD 188

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IS  TV ++++ ++ K   ++R+ A  YA++  +
Sbjct: 189 ISETTVKSHVSRLLGKLELESRTQAALYALKTGL 222


>gi|307300268|ref|ZP_07580048.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307321145|ref|ZP_07600549.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306893220|gb|EFN24002.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904434|gb|EFN35018.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 262

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 87/254 (34%), Gaps = 24/254 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSH----LPTRSDLLARMIPLDCTVSWTMR-MYALTEYVGAS 59
           + + +  L   ++ ++         +  R+DL A  +       +  R +  L++   A 
Sbjct: 1   MYRASSGLGGFEDSKSVLPKKSKIVMLARTDLFAECLTQAIGARFQDREVVRLSD---AD 57

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
             L           L  + ++++P  +        K     ++     L   V H + E 
Sbjct: 58  SLLDGNLVDVTLVMLYRVPTANFPSIIRMIHEFHPKAAIGLLVDNAEGLDASVSHLVEEG 117

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANM 172
           +            L   +      + LL   G       L  +         LA      
Sbjct: 118 MIH------GVLPLNLHLDVCLTAIDLLMKGGEHFPAALLRRLAPKNPGERDLATRNETA 171

Query: 173 FKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            ++ D    K F    LT RE++ L  I  G  +  IA  LG+S NTV  ++ +I +K  
Sbjct: 172 SENVDPERRKGFGQVVLTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMN 231

Query: 230 TKTRSGAIAYAVRN 243
            + R+ A +   RN
Sbjct: 232 VRNRTEAASRYFRN 245


>gi|307327036|ref|ZP_07606226.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887334|gb|EFN18330.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 229

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 4/164 (2%)

Query: 87  VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   L   +    + +R   P  +    F       +        +       A +   
Sbjct: 56  VRMPKLDGVEATRLICEREGAPKVIILTTFDLDEYAFSALKAGAGGFMLKDVPPAELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +    A               + E LT RE E +  +++G +
Sbjct: 116 IRAVHSGDAVVAPSTTRRLLDRFAPMLPGGGGSGGRVRPELERLTDREREVVLLVAQGLS 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 176 NGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYETGLV 219


>gi|157146272|ref|YP_001453591.1| DNA-binding transcriptional regulator CsgD [Citrobacter koseri ATCC
           BAA-895]
 gi|157083477|gb|ABV13155.1| hypothetical protein CKO_02029 [Citrobacter koseri ATCC BAA-895]
          Length = 216

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N     T D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYATEDEERVVNGLQGILRGECYFSQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|608485|gb|AAA89073.1| VSMR [Pseudomonas aeruginosa]
          Length = 241

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            + +       L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K     ++
Sbjct: 170 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229


>gi|329948190|ref|ZP_08295062.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328522923|gb|EGF50028.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 215

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 60/170 (35%), Gaps = 4/170 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +  + +         P  L    F    +         + +     
Sbjct: 49  DVVCMDLRMSEGDGLTATRQIVAERQDSAPAVLVVTTFDMDADVFGALEAGADGFILKDC 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  L     ++ +     +    A +    ++++        LT RE E + 
Sbjct: 109 EPEELVDAVRRLALGYGLVDQSVTRRVIAEFARRQGRSENHEALGV----LTEREREVIQ 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ G ++ EIA  L +  +TV +++  I+ K   + R  A+ +A RN +
Sbjct: 165 LLASGMSNAEIAAALVVETSTVKSHLTRILPKIGARDRVQAVVWAYRNGL 214


>gi|284042986|ref|YP_003393326.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Conexibacter woesei DSM 14684]
 gi|283947207|gb|ADB49951.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Conexibacter woesei DSM 14684]
          Length = 873

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G +A                D  L+ RE   L ++  G +  EIA  LG+S NTV  ++
Sbjct: 787 VGFVAELLDERPAGTAAEAPGDSALSQRERAILRYLPSGLSKREIAGELGVSANTVKTHV 846

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           +SI RK   ++R+ A+A A    ++
Sbjct: 847 SSIYRKLDVRSRAQAVARARELGLL 871


>gi|116696270|ref|YP_841846.1| response regulator [Ralstonia eutropha H16]
 gi|113530769|emb|CAJ97116.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 218

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 12/220 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D    +   + AL +    + F +V       + +        P  ++  + 
Sbjct: 1   MTIRILLIDDHTLFRSGIRALLQR--QADFEIVDEAADGVEGIKR-AKQHRPDVILLDLN 57

Query: 92  LSEKDKYYNV------LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +        +      L R   +   V     E      G    Y     +   +  G+ 
Sbjct: 58  MPGLSGLEALQLLVEDLPRTAVIVLTVSEEAEELAAALRGGARGYLIKNIETEALIAGIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                  +I      +   L A              +   LT RE E +  ++ G+++ E
Sbjct: 118 RAAAGEPVISDSMTAK---LVAQFRAPAPVAAARQDEAPRLTAREREIVQGLARGESNKE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  LG++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 175 IARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214


>gi|15598673|ref|NP_252167.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1]
 gi|116051496|ref|YP_789670.1| transcriptional regulator RhlR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890275|ref|YP_002439139.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58]
 gi|1710203|sp|P54292|RHLR_PSEAE RecName: Full=Regulatory protein rhlR; AltName: Full=Elastase
           modulator
 gi|9949621|gb|AAG06865.1|AE004768_10 transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1]
 gi|151538|gb|AAA25983.1| rhlR [Pseudomonas aeruginosa]
 gi|452505|gb|AAA62130.1| regulatory protein [Pseudomonas aeruginosa]
 gi|1117918|gb|AAC44036.1| RhlR [Pseudomonas aeruginosa PAO1]
 gi|115586717|gb|ABJ12732.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|161724881|emb|CAO85753.1| RhlR protein [Pseudomonas aeruginosa]
 gi|211908969|gb|ACJ12779.1| rhamnosyl transferase I [actinobacterium MSA10]
 gi|211908971|gb|ACJ12780.1| rhamnosyl transferase I [actinobacterium MSA19]
 gi|218770498|emb|CAW26263.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58]
 gi|281331824|emb|CBI71035.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331826|emb|CBI71036.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331828|emb|CBI71037.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331830|emb|CBI71038.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331832|emb|CBI71039.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331834|emb|CBI71040.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331836|emb|CBI71041.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331838|emb|CBI71042.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331840|emb|CBI71043.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|299772610|gb|ADJ38517.1| transcriptional regulator RhlR [Pseudomonas sp. BSFD5]
          Length = 241

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            + +       L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K     ++
Sbjct: 170 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229


>gi|282862559|ref|ZP_06271620.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562245|gb|EFB67786.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 225

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 9/172 (5%)

Query: 80  SDWPFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENIT---PPAGMDNRYCSLT 134
           S+ P   V  +A+      +    L R       +  T+ +N                L 
Sbjct: 56  SERPDLAVLDIAMPRLTGLQAARELSRTMPELRILMLTMYDNEQYFFEALKAGASGFVLK 115

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               R  +       +    L        L+  Y   + +  DV       +T RE E L
Sbjct: 116 SVADRDLVEACRAAMRDEPFLYPG-AVTALIRNYLDRVREGGDVPARA---ITEREEEIL 171

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++EG +S EIA +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 172 KLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 223


>gi|153008009|ref|YP_001369224.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
 gi|151559897|gb|ABS13395.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
          Length = 277

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT +E   L W +EGKT  EI++ILG++  TV  ++ +   K     ++ A+  A+R+
Sbjct: 15  LTSQERIVLYWTAEGKTRWEISIILGVAETTVVTHLRNSRIKLGATNKTHAVVEAIRH 72


>gi|52081342|ref|YP_080133.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52786720|ref|YP_092549.1| GerE [Bacillus licheniformis ATCC 14580]
 gi|157693255|ref|YP_001487717.1| spore germination protein E [Bacillus pumilus SAFR-032]
 gi|194017341|ref|ZP_03055953.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|221310782|ref|ZP_03592629.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315107|ref|ZP_03596912.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320025|ref|ZP_03601319.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324308|ref|ZP_03605602.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767655|ref|NP_390719.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
 gi|296331611|ref|ZP_06874080.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675430|ref|YP_003867102.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|311069333|ref|YP_003974256.1| transcriptional regulator [Bacillus atrophaeus 1942]
 gi|319647250|ref|ZP_08001472.1| spore germination protein gerE [Bacillus sp. BT1B_CT2]
 gi|321312374|ref|YP_004204661.1| transcriptional regulator [Bacillus subtilis BSn5]
 gi|251757272|sp|P11470|GERE_BACSU RecName: Full=Spore germination protein gerE
 gi|13786948|pdb|1FSE|A Chain A, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786949|pdb|1FSE|B Chain B, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786950|pdb|1FSE|C Chain C, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786951|pdb|1FSE|D Chain D, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786952|pdb|1FSE|E Chain E, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786953|pdb|1FSE|F Chain F, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|2924355|emb|CAA11701.1| GerE [Bacillus subtilis]
 gi|52004553|gb|AAU24495.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52349222|gb|AAU41856.1| GerE [Bacillus licheniformis ATCC 14580]
 gi|157682013|gb|ABV63157.1| spore germination protein E [Bacillus pumilus SAFR-032]
 gi|194011209|gb|EDW20779.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|225185283|emb|CAB14801.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
 gi|291485272|dbj|BAI86347.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195]
 gi|296151206|gb|EFG92086.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413674|gb|ADM38793.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|310869850|gb|ADP33325.1| transcriptional regulator [Bacillus atrophaeus 1942]
 gi|317390597|gb|EFV71402.1| spore germination protein gerE [Bacillus sp. BT1B_CT2]
 gi|320018648|gb|ADV93634.1| transcriptional regulator [Bacillus subtilis BSn5]
          Length = 74

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|167755537|ref|ZP_02427664.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402]
 gi|237734285|ref|ZP_04564766.1| response regulator [Mollicutes bacterium D7]
 gi|167704476|gb|EDS19055.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402]
 gi|229382515|gb|EEO32606.1| response regulator [Coprobacillus sp. D7]
          Length = 224

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 70/170 (41%), Gaps = 6/170 (3%)

Query: 81  DWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLT 134
           + P  ++  + +   D       V +   ++   +  T  ++    + +    + Y    
Sbjct: 46  NIPDVILMDIRMPRMDGVYCTKMVKEAYPDVKIIILTTFDDDDFVFSALKFGASGYLLKG 105

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
             +  +   ++ +   G +I  D   ++  L +  AN   + +V+     EL   E + +
Sbjct: 106 VSMDGLYQAILTVVSGGAMINPDIATKVFRLFSKMANTNYAINVNDDNVRELNKPEWKVI 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             +  G ++ EIA  L +S  TV NY++SI+ K   + R+    +AV+  
Sbjct: 166 QQVGFGLSNKEIAQKLFLSEGTVRNYLSSILSKLELRDRTQLAIWAVQTG 215


>gi|119714219|ref|YP_919361.1| metal-dependent phosphohydrolase [Nocardioides sp. JS614]
 gi|119526128|gb|ABL79498.1| metal-dependent phosphohydrolase, HD sub domain [Nocardioides sp.
           JS614]
          Length = 516

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 43/81 (53%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A  +A   +   V       L+ REVE L  +++G ++ E+A  L ISR T  +++  + 
Sbjct: 434 AVVEAAGEQPAPVRGNWPSGLSDREVEVLRLVAKGLSNQEVAQTLVISRRTAEHHVQHVY 493

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K  T TR+ A  YA+ ++++
Sbjct: 494 AKIGTSTRAAAALYAMEHDLL 514


>gi|157371727|ref|YP_001479716.1| two component LuxR family transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157323491|gb|ABV42588.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 210

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 12/132 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE------------IGLLAAYQANM 172
           G+D R   LT   +R  +  ++       +L+D   E              +++   A+ 
Sbjct: 77  GVDARIIVLTVSDSRSDVYALIDAGADGYLLKDSEPEQLLEHIRAAAEGKNVISDAVADY 136

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 137 LSSRSEQHDPFAELTERELDVLQEVARGLSNKQVAAQLHISEETVKVHIRNMLRKLDVRS 196

Query: 233 RSGAIAYAVRNN 244
           R  A    + + 
Sbjct: 197 RVAATVMYLEHK 208


>gi|120402652|ref|YP_952481.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955470|gb|ABM12475.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 219

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            F  L    +           L         G   ++P              L+  Y   
Sbjct: 95  FFEALRAGASGYVLKSVADLDLLKACRATLRGEPFVYPGAV---------TALIQDYLNR 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                D+       +T RE E L  I+EG ++ EIA  LGIS  TV+ + A+++ K   +
Sbjct: 146 ARHGDDLPGTI---VTSREEEVLKLIAEGYSTREIAGTLGISAKTVDRHRANLLAKLGLR 202

Query: 232 TRSGAIAYAVRNNIV 246
            R     YA+R  ++
Sbjct: 203 DRLALTRYAIRVGLI 217


>gi|84497395|ref|ZP_00996217.1| putative LuxR-family transcriptional regulator [Janibacter sp.
           HTCC2649]
 gi|84382283|gb|EAP98165.1| putative LuxR-family transcriptional regulator [Janibacter sp.
           HTCC2649]
          Length = 972

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           RL    LLA    ++             LT RE E L  ++ G ++ ++   L IS  T 
Sbjct: 884 RLGAAPLLAEL-DDLTAPSAATAASPDHLTRREQEVLELVARGLSNGQVGQQLFISTKTA 942

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +++ I+ K    +R+ A A A    +V
Sbjct: 943 SVHVSRILAKLGAASRTQAAAIARDRGLV 971


>gi|114046728|ref|YP_737278.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|113888170|gb|ABI42221.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 225

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 87/218 (39%), Gaps = 17/218 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+  ++        + +L      S  + V W     Q+    + +D    L+  + +  
Sbjct: 19  RVGLVEDQQLVRQGIASLIAI---SQHIEVSWQAENGQEALKRLQTDAVDVLLSDIRMPV 75

Query: 95  KDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLF 148
            +    + Q R  +   PV      + +           N +      + ++   +  + 
Sbjct: 76  LNGISLLKQLRAAQNPIPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLEAIETVA 135

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G +I    L ++   ++  A    ++D+       L+ RE E L +++ G ++ EIA 
Sbjct: 136 QGGHLIEPSVLEQMQQ-SSATAQSVPTHDL-------LSEREREILGFMAGGFSNKEIAN 187

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + ++  TV N++++I+ K   + R+ A+   ++ +++
Sbjct: 188 AVFLAEGTVKNHVSTILTKLDCRDRTQAVLKGLQLSLI 225


>gi|320107298|ref|YP_004182888.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319925819|gb|ADV82894.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 204

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                D  L+ REVE L  +S G ++  IA  L +S +T+  ++ +I+ K     R+ A+
Sbjct: 134 AEHAGDEALSPREVEVLRHVSAGHSNKVIASDLDLSEHTIKGHLKNILSKLGANDRTHAV 193

Query: 238 AYAVRNNIV 246
             A+    +
Sbjct: 194 MIALNRGFL 202


>gi|297193099|ref|ZP_06910497.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151643|gb|EFH31285.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 219

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 2/123 (1%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++  G+ ++     ++         L+  +             + 
Sbjct: 96  RAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTRR--LITEFSKLSETPRPAAMTQV 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I++G ++ EIA  L ++ +T+  +++ ++ K   + R+ A  +A   
Sbjct: 154 ADLTERETEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEA 213

Query: 244 NIV 246
            +V
Sbjct: 214 RLV 216


>gi|302520045|ref|ZP_07272387.1| response regulatory protein [Streptomyces sp. SPB78]
 gi|318061142|ref|ZP_07979863.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318079227|ref|ZP_07986559.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|302428940|gb|EFL00756.1| response regulatory protein [Streptomyces sp. SPB78]
          Length = 220

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 10/163 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +   +    +L  P      V  T   +      ++           R    
Sbjct: 67  MDLQLGPGIDGVEATRRLLALPAPPRVLVLTTYDTDADVTRAVNAGATGYLLKAERPE-- 124

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              LF       + R      +A       ++         ELT RE + L  +S+G  +
Sbjct: 125 --ELFAAIHAAAQGRTALSPPVAHRVLAHLRAP------RPELTPRERDILAQLSQGLGN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS  TV  ++  + +K    TR+GA+A A    ++
Sbjct: 177 RDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 219


>gi|228953499|ref|ZP_04115544.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806238|gb|EEM52812.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 500

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 88/239 (36%), Gaps = 16/239 (6%)

Query: 17  EQRTSFVSHLPTRSDL---LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           E+       +P ++++   L R++ +D        +  L +     +  +V       Q 
Sbjct: 268 EEGMLVTCTIPRQTEIKNGLIRLLIVDDQPFVRESLRTLLDRYEDLN--VVGLAEDGNQA 325

Query: 74  LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPE---NITPPAGMD 127
           +D +     P  ++  + +   D       + Q+   +   +F T  +    +       
Sbjct: 326 ID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQDTEQAVESLRNGA 384

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   + +   +   + L+   G +I +    +I      + +  K         +ELT
Sbjct: 385 DGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEKKETPQSKATAYELT 440

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++G     IA  L +S  TV NY ++   K     +  A+  A+   I+
Sbjct: 441 AREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVSNKEEAVQKALEIGII 499


>gi|312196500|ref|YP_004016561.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227836|gb|ADP80691.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 229

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 39/65 (60%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G+   LT RE E L  I++G+++ E+A I  +S NTV +YI ++ RK    +RS A+ +
Sbjct: 150 PGRGEGLTEREAEVLALITQGRSNAELAEITCLSPNTVKSYIRTLYRKIGVTSRSQAVLW 209

Query: 240 AVRNN 244
            V + 
Sbjct: 210 GVNHG 214


>gi|307946119|ref|ZP_07661454.1| transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307769783|gb|EFO29009.1| transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 233

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 73/199 (36%), Gaps = 7/199 (3%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWP---FDLVRCMALSEKDKYY-NVLQRPTELFC 110
            +GA+H L+    +        +    WP    D +   +LS  D      L     +  
Sbjct: 33  RMGATHVLITGLPMPNRPIDSLVHRFRWPDQRNDGIESTSLSANDSALMLGLASNRAMVW 92

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--RLWEIGLLAAY 168
            +     E+    A        +   V  +      ++  G  +  +   L  + +L+  
Sbjct: 93  TISAGDMEHSDLLAAAGEGNQVVIVPVTELHPFQAFVYASGPSLQANKWELAGLEVLSNA 152

Query: 169 QANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                +   V  G +   L+ RE + L   + GKT+ EIA +L IS+ TV+ ++ +   K
Sbjct: 153 AFARLRDLGVVSGQRPGALSTRERKVLELTAYGKTAGEIADLLDISQRTVHAHLQNASVK 212

Query: 228 TATKTRSGAIAYAVRNNIV 246
                ++  +  A+R   +
Sbjct: 213 LNASNKTHTVVEALRYGQI 231


>gi|296454799|ref|YP_003661943.1| LuxR family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184231|gb|ADH01113.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 185

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 117 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 176

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 177 RWAADRRIV 185


>gi|254242162|ref|ZP_04935484.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192]
 gi|126195540|gb|EAZ59603.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192]
          Length = 242

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            + +       L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K     ++
Sbjct: 170 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229


>gi|15603675|ref|NP_246749.1| NarP [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12722232|gb|AAK03894.1| NarP [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 209

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 17/200 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           L++       + +  ++     F++V       +     +  +P   +       L    
Sbjct: 8   LIIDDHPLMRRGIKQLMELAPNFEVVADAGNGSEGISLALQTQPDLIILDLNMKGLSGLD 67

Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------ 164
           T       G+D R   LT    +  I  ++       +L+D   +  L            
Sbjct: 68  TLKALRAEGIDARILILTVSDLKSDIFTLIDAGADGYLLKDTEPDALLSQIQRIAQGEVI 127

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+    +      ++    + LT RE++ L  I+ G ++ +IA  L IS  TV  +I ++
Sbjct: 128 LSDSIKDALIERQMNADPIYSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNL 187

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           +RK    +R  A      + 
Sbjct: 188 LRKLNVHSRVAATVLYFEHK 207


>gi|21219585|ref|NP_625364.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|8744963|emb|CAB95289.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 221

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    L+  +A + +      L     +    F              + +     
Sbjct: 49  DVVLMDIRMPLLDGLAATRRITGDPGLPDVRVVMLTTFELDEYVFEAIRSGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+A +     +      G+   LT RE E + 
Sbjct: 109 EPEELLRAVRAVVDGDALLSPGVTRR--LIAEFAVRSKEP--AAPGEMARLTEREREVMA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|315128079|ref|YP_004070082.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315016592|gb|ADT69930.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 218

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 8/162 (4%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  S KD +  + ++   L       L      P   +    S    V        +L  
Sbjct: 51  IETSSKDAWTKLKEQLVNLRIKCDIVLFNLDENPELANRALLSGIRGVFYTTDNADVLMK 110

Query: 150 KGRIILRDRLW--------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             R++L D+LW         +  +  +  +          +  +LT RE   ++ +S G 
Sbjct: 111 GIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTDGDIEPIKLTKREKAIISLMSNGS 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + EIA  L IS +TV  ++ S  RKT  + R   +++A +N
Sbjct: 171 KNKEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212


>gi|300781389|ref|ZP_07091243.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533096|gb|EFK54157.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 228

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 8/176 (4%)

Query: 79  SSDWPFDLV----RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
            S+ P D+V    +   L        + +R       +  T  +      G+        
Sbjct: 45  MSEHPVDIVLMDVQMPVLDGISGTRQLSKRFPGAKVIILTTFDDEDYVMGGLAAGASGFL 104

Query: 135 F---DVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGRE 190
               +   +   +  +     +I       I   L+   A              ELT RE
Sbjct: 105 LKDAEPETLLDAIRTVASGDAVISPRATNRIVAKLSEAPAETIPLSTADRRAIQELTERE 164

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  +  G T+ EIA  L IS  TV  ++  ++ KT ++ R  A  +A R  +V
Sbjct: 165 HEILIAVGRGWTNTEIAERLFISMPTVKTHVGRVLMKTHSRDRVHAALFAYRTGLV 220


>gi|239942882|ref|ZP_04694819.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239989342|ref|ZP_04710006.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 216

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 16/173 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDNRYCSLTF 135
           P  L+  + + E D    VL++   L  P        F                      
Sbjct: 47  PDVLLLDIRMPEVDG-LTVLRQVGTLTAPPAVAMLTTFDAARHIDDALRSGAVGLLMKNT 105

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              ++   + +L   GRI+  + +  +  G LAA              +   LT RE + 
Sbjct: 106 APEQLVHAVRVLAAGGRILAPEAVGPVIEGYLAAG------RDSGAADRTGALTDREGQV 159

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +  G ++ EIA  L +S  TV ++++S++ K     R  A   A R  ++
Sbjct: 160 LALVGAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQAAVLADRAGLI 212


>gi|269838161|ref|YP_003320389.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787424|gb|ACZ39567.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 983

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  +++G T  ++A  L +S  TV+ ++ SI  K    +R+ A  +A+ N +
Sbjct: 923 LTPREVEVLRLVADGLTDAQVAERLFLSPRTVSQHLRSIYNKLGVSSRAAATRFALENRL 982


>gi|226311283|ref|YP_002771177.1| germination protein [Brevibacillus brevis NBRC 100599]
 gi|226094231|dbj|BAH42673.1| germination protein [Brevibacillus brevis NBRC 100599]
          Length = 76

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I+++M+K   K RS A+   VR  
Sbjct: 14  LTNREREVFELLVQDKTTKEIAGQLFISEKTVRNHISNVMQKLGVKGRSQAVVELVRLG 72


>gi|148553727|ref|YP_001261309.1| two component LuxR family transcriptional regulator [Sphingomonas
           wittichii RW1]
 gi|148498917|gb|ABQ67171.1| two component transcriptional regulator, LuxR family [Sphingomonas
           wittichii RW1]
          Length = 229

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 8/168 (4%)

Query: 86  LVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVAR 139
           +V  + L +    D      +R   +   V   L +  T     A   + Y         
Sbjct: 61  IVSDLRLPDGLAIDLLAEARERHPGIEILVISVLGDETTILAAIAAGASGYLLKDALPED 120

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWIS 198
           I    M +   G  I    +    +  A Q +         G+D   LT RE++ L  I+
Sbjct: 121 IHATAMEVLSGGSPISPS-IARFIVRRARQESSGAPAAAGPGEDAPRLTPRELDILWGIA 179

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G T +EIA  L +SR+TV  +I +I RK   +TR  A+  A++  ++
Sbjct: 180 KGLTYNEIADQLDLSRHTVPGHIKAIYRKLQVQTRGEAVYEAIQCGLI 227


>gi|318060483|ref|ZP_07979206.1| regulatory protein LuxR [Streptomyces sp. SA3_actG]
 gi|318076515|ref|ZP_07983847.1| regulatory protein LuxR [Streptomyces sp. SA3_actF]
          Length = 223

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 2/137 (1%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           R   L    F          A   + +         +   +         +       I 
Sbjct: 84  RSRVLMLTTFDLDAYVDDALAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRI- 142

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +  + +   +  D    +  +LT REV+ L  I +G ++ EIA  L +S +TV  +++ 
Sbjct: 143 -IEGHLSGRRQPSDQELARLGDLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSR 201

Query: 224 IMRKTATKTRSGAIAYA 240
           ++ KT  ++R+ A   A
Sbjct: 202 VLMKTGCQSRAQAAVLA 218


>gi|218460663|ref|ZP_03500754.1| two component transcriptional regulator, LuxR family protein
           [Rhizobium etli Kim 5]
          Length = 61

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           T RE E L WIS+GK + +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 1   TQRESEVLLWISKGKATRDIGEILGLSARTVNTHLEQIYVKLGVENRASAAVKA 54


>gi|146311212|ref|YP_001176286.1| DNA-binding transcriptional regulator CsgD [Enterobacter sp. 638]
 gi|145318088|gb|ABP60235.1| response regulator receiver protein [Enterobacter sp. 638]
          Length = 216

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 46/87 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSSESALLTHREKEILNKLRIGSSNIEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
            NTV  ++ ++ +K A K R+ A+++A
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|57234510|ref|YP_181438.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57234583|ref|YP_181405.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224958|gb|AAW40015.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
 gi|57225031|gb|AAW40088.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 224

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L   + G ++ +IA  L +S  T+  ++++I +K +  +R+ AI Y ++  
Sbjct: 157 PLTDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYGLKRG 216


>gi|296314242|ref|ZP_06864183.1| nitrate/nitrite response regulator protein NarL [Neisseria
           polysaccharea ATCC 43768]
 gi|296839039|gb|EFH22977.1| nitrate/nitrite response regulator protein NarL [Neisseria
           polysaccharea ATCC 43768]
          Length = 218

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+ +N+
Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHHNV 212


>gi|293409411|ref|ZP_06652987.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469879|gb|EFF12363.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 216

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|284029210|ref|YP_003379141.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808503|gb|ADB30342.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 213

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 4/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y +       +   +  +   G  +   RL    L 
Sbjct: 77  KFLALSVSDAAEDVIGVIRAGARGYVTKNISGTELVDAIGRVA-DGDAVFSPRLAGFVLD 135

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A   A    S D    +   L+ RE E L  I+ G    E+A  L IS  TV  +++S++
Sbjct: 136 AFSGAIDIASVDEDLDR---LSQREREVLRLIARGYAYKEVARELFISVKTVETHVSSVL 192

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R     +A    +V
Sbjct: 193 RKLQLSNRHELTRWATDRRLV 213


>gi|209696260|ref|YP_002264190.1| probable CsgAB operon transcriptional regulatory protein
           [Aliivibrio salmonicida LFI1238]
 gi|208010213|emb|CAQ80542.1| probable CsgAB operon transcriptional regulatory protein
           [Aliivibrio salmonicida LFI1238]
          Length = 215

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSD 204
           ++    + I+   +W    +     ++++S           LT RE E L  +S G ++ 
Sbjct: 110 VISEGVKKIIDGEMWLSRKITNDLISIYRSKQNGILTSSVSLTTREKEILKLLSLGASNI 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +IA  L +S NTV  ++ ++ +K   K R  A+ +
Sbjct: 170 DIANTLFVSENTVKTHLHNVFKKLNVKNRLQAMIW 204


>gi|78060780|ref|YP_367355.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77965330|gb|ABB06711.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 209

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   +     +   + +     R +    L +  L                 +   L
Sbjct: 98  AMGYVPKSASPRTLLSAIRIALNGERYVPPLVLDDPAL--------QHPDGAAAARGSML 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T R++E L +++EG  +  IA  LG+S  T+  +I +I +      R+ A A   +  ++
Sbjct: 150 TQRQIEVLRYLAEGVPNKVIADKLGLSEKTIKAHITAIFKALNVINRTQAAAAGRKAGLI 209


>gi|299138245|ref|ZP_07031424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298599491|gb|EFI55650.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 162

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           ++ F    I +G  +   +  I     + E+ + A   A    + +    +   +T RE+
Sbjct: 47  AILFAAFGIWLGFRITRNRETIRETVVVREVLVPAEAPAPEPFAPNTAQQQTLGITAREL 106

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E LT I+ G ++ EIA  L +S NTV  + A    K     R+ A+       ++
Sbjct: 107 ETLTLIARGFSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAVQRGKELGLL 161


>gi|146283498|ref|YP_001173651.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145571703|gb|ABP80809.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
          Length = 872

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                  +    +  L+ RE+  L  I++G ++ EIA  L IS +TV  +   I  K   
Sbjct: 797 EREPEISLPTADETVLSNRELTVLRLIAQGCSNQEIAEQLFISLHTVKTHARRINTKLGV 856

Query: 231 KTRSGAIAYA 240
             R+ A+A A
Sbjct: 857 ARRTQAVAKA 866


>gi|312132068|ref|YP_003999408.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311908614|gb|ADQ19055.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 204

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKDFE-----LTGR 189
            R  +  M+       +L+    E     +L      ++ S ++   ++       LT R
Sbjct: 88  ERSYVSQMVQAGASGYLLKSASREEMEEAILTVSSGKLYMSLELDISREEIKKMPVLTTR 147

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+EG T+ +IA  L +S +TV+++  +++ K      +G I +A +N ++
Sbjct: 148 EREVLVLIAEGLTNPQIAERLFVSPHTVDSHRKNLLTKFEVNNTAGLIKWAAKNGLI 204


>gi|257064489|ref|YP_003144161.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792142|gb|ACV22812.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 258

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           + R I  D   +  +     + + KS  +    K   LT RE E L  I++G+++ EIA 
Sbjct: 162 RDRRIASDSPAKRRMTQERYSRIVKSTIEPAKPKGDALTPREQEVLVHITDGRSNAEIAR 221

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           I+GIS  TV  +++ I  K    +R+  IA 
Sbjct: 222 IMGISEATVKKHVSHIFDKYNVFSRTELIAR 252


>gi|269925757|ref|YP_003322380.1| two component transcriptional regulator, LuxR family [Thermobaculum
            terrenum ATCC BAA-798]
 gi|269789417|gb|ACZ41558.1| two component transcriptional regulator, LuxR family [Thermobaculum
            terrenum ATCC BAA-798]
          Length = 1648

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 175  SYDVHWGKDFELTGREVECLTWISEGKTS-DEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S  V       LT RE E L  +  G TS  +++  LG+S +TV  ++ +I+ K   ++R
Sbjct: 1574 SRPVRSSSLQMLTDREQEILQLLVNGVTSTKDLSRQLGVSEHTVKYHLRNILSKLHLQSR 1633

Query: 234  SGAIAYAVRNNI 245
            +  +A+AV++ +
Sbjct: 1634 AQVVAWAVQHGL 1645


>gi|154509662|ref|ZP_02045304.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799296|gb|EDN81716.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC
           17982]
          Length = 216

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 9/156 (5%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +E       ++    L   V     + +         Y + +     +   +  +     
Sbjct: 68  AEVASTCRDIEGLHFLALSVSDAAEDVVQVIRAGARGYVTKSIATPDLVEAIGRVAAGDA 127

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVIL 210
                       LA +  + F + +V     +   L+ RE E +  I+ G T  E+A  L
Sbjct: 128 AFSP-------RLAGFVLDAFGTGEVSTTDTELDLLSAREQEVMRLIARGYTYKEVAHDL 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  +++S++RK     R+    +A++ +IV
Sbjct: 181 FISIKTVETHVSSVLRKLQLSNRNELTRWAMQRHIV 216


>gi|116073608|ref|ZP_01470870.1| possible DNA-binding response regulator [Synechococcus sp. RS9916]
 gi|116068913|gb|EAU74665.1| possible DNA-binding response regulator [Synechococcus sp. RS9916]
          Length = 244

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE + L  + +G T+ +IA    +S  TV ++++S++RK A   R+ A+  A R  
Sbjct: 172 PLSLREEDVLRGLCKGMTNQQIADAFTVSTETVKSHVSSVLRKLAVTDRTQAVVKAFREG 231

Query: 245 IV 246
           +V
Sbjct: 232 LV 233


>gi|70731182|ref|YP_260923.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345481|gb|AAY93087.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 222

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM----DNRYCSLTFDVARIRIGL 144
            M L        +LQ+       V  T+ ++              Y         +   L
Sbjct: 59  RMPLLNGLGAARLLQQRQPEVKVVIFTMDDSPDHLEAAMAAGAVGYLLKDASREEVLDAL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         + A     M +  +    +   LT RE + L  ++ G ++ 
Sbjct: 119 QRVARGEEALNS------AVSARLLRRMSERGNGQAPQAQALTARERQVLGLVAGGFSNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGI+  T   ++  ++ K     R+ A    +   +V
Sbjct: 173 EIGEKLGITTGTAKAHVERVIGKLGAADRTQAAVRGMALGLV 214


>gi|84497934|ref|ZP_00996731.1| putative two-component system DNA-binding response regulator
           [Janibacter sp. HTCC2649]
 gi|84381434|gb|EAP97317.1| putative two-component system DNA-binding response regulator
           [Janibacter sp. HTCC2649]
          Length = 238

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y + T     +   +  +   G  +   RL    +L
Sbjct: 101 RFLALSVSDAAEDVIAVIRAGARGYVTKTITARDLGTAVRRVA-DGDAVFSPRLAGF-VL 158

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ A   +  +V    D  L+ RE E +  I+ G    E+A  L IS  TV  +++S++
Sbjct: 159 DAFGAAAGEIAEVDEELD-RLSAREREVMRLIARGYQYKEVAKELFISVKTVETHVSSVL 217

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    +R    A+A+   +V
Sbjct: 218 RKLQLSSRHELTAWAMGRRLV 238


>gi|238794186|ref|ZP_04637801.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
 gi|238726476|gb|EEQ18015.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
          Length = 214

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           +  D  R+++ L+    K   + ++++  +GL                     L+ RE E
Sbjct: 107 VVNDRDRLQMVLIETHEKMLTLSQNKINVLGL-----------KGTGISSKTLLSPRENE 155

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W S GKT  EIA+I GI+  TV  +I ++++K        AI   V   ++
Sbjct: 156 VLHWASMGKTYQEIALITGITSRTVKYHIGNVVKKLGVINAKQAIRLGVELELI 209


>gi|23336584|ref|ZP_00121794.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bifidobacterium longum
           DJO10A]
 gi|189440631|ref|YP_001955712.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|312133936|ref|YP_004001275.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689868|ref|YP_004209602.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691808|ref|YP_004221378.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189429066|gb|ACD99214.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|291516417|emb|CBK70033.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bifidobacterium longum subsp.
           longum F8]
 gi|311773230|gb|ADQ02718.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|320456664|dbj|BAJ67286.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461204|dbj|BAJ71824.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 231

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|30022580|ref|NP_834211.1| germination protein gerE [Bacillus cereus ATCC 14579]
 gi|30264558|ref|NP_846935.1| germination protein GerE [Bacillus anthracis str. Ames]
 gi|47530023|ref|YP_021372.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187380|ref|YP_030632.1| germination protein GerE [Bacillus anthracis str. Sterne]
 gi|49481503|ref|YP_038542.1| germination protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141012|ref|YP_085817.1| germination protein [Bacillus cereus E33L]
 gi|65321856|ref|ZP_00394815.1| COG2771: DNA-binding HTH domain-containing proteins [Bacillus
           anthracis str. A2012]
 gi|75760738|ref|ZP_00740760.1| Germination protein gerE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118479654|ref|YP_896805.1| germination protein [Bacillus thuringiensis str. Al Hakam]
 gi|163942232|ref|YP_001647116.1| LuxR family transcriptional regulator [Bacillus weihenstephanensis
           KBAB4]
 gi|165871523|ref|ZP_02216170.1| germination protein GerE [Bacillus anthracis str. A0488]
 gi|167635626|ref|ZP_02393938.1| germination protein GerE [Bacillus anthracis str. A0442]
 gi|167641680|ref|ZP_02399925.1| germination protein GerE [Bacillus anthracis str. A0193]
 gi|170708363|ref|ZP_02898807.1| germination protein GerE [Bacillus anthracis str. A0389]
 gi|177653107|ref|ZP_02935394.1| germination protein GerE [Bacillus anthracis str. A0174]
 gi|190566971|ref|ZP_03019887.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I]
 gi|196034356|ref|ZP_03101765.1| germination protein GerE [Bacillus cereus W]
 gi|196039336|ref|ZP_03106642.1| germination protein GerE [Bacillus cereus NVH0597-99]
 gi|196044720|ref|ZP_03111954.1| germination protein GerE [Bacillus cereus 03BB108]
 gi|206969521|ref|ZP_03230475.1| germination protein GerE [Bacillus cereus AH1134]
 gi|206976107|ref|ZP_03237017.1| germination protein GerE [Bacillus cereus H3081.97]
 gi|217961984|ref|YP_002340554.1| germination protein GerE [Bacillus cereus AH187]
 gi|218231866|ref|YP_002369296.1| germination protein GerE [Bacillus cereus B4264]
 gi|218899656|ref|YP_002448067.1| germination protein GerE [Bacillus cereus G9842]
 gi|225866473|ref|YP_002751851.1| germination protein GerE [Bacillus cereus 03BB102]
 gi|227817270|ref|YP_002817279.1| germination protein GerE [Bacillus anthracis str. CDC 684]
 gi|228903018|ref|ZP_04067157.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222]
 gi|228910323|ref|ZP_04074139.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200]
 gi|228917128|ref|ZP_04080686.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228923243|ref|ZP_04086533.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228929537|ref|ZP_04092556.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935809|ref|ZP_04098621.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228941677|ref|ZP_04104224.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228948213|ref|ZP_04110497.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228954769|ref|ZP_04116790.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960765|ref|ZP_04122403.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228967593|ref|ZP_04128616.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228974604|ref|ZP_04135170.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981199|ref|ZP_04141499.1| Spore germination protein gerE [Bacillus thuringiensis Bt407]
 gi|228987740|ref|ZP_04147851.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229013700|ref|ZP_04170829.1| Spore germination protein gerE [Bacillus mycoides DSM 2048]
 gi|229032144|ref|ZP_04188120.1| Spore germination protein gerE [Bacillus cereus AH1271]
 gi|229048205|ref|ZP_04193774.1| Spore germination protein gerE [Bacillus cereus AH676]
 gi|229062182|ref|ZP_04199506.1| Spore germination protein gerE [Bacillus cereus AH603]
 gi|229072004|ref|ZP_04205214.1| Spore germination protein gerE [Bacillus cereus F65185]
 gi|229081752|ref|ZP_04214245.1| Spore germination protein gerE [Bacillus cereus Rock4-2]
 gi|229093586|ref|ZP_04224687.1| Spore germination protein gerE [Bacillus cereus Rock3-42]
 gi|229098957|ref|ZP_04229892.1| Spore germination protein gerE [Bacillus cereus Rock3-29]
 gi|229105124|ref|ZP_04235775.1| Spore germination protein gerE [Bacillus cereus Rock3-28]
 gi|229111961|ref|ZP_04241505.1| Spore germination protein gerE [Bacillus cereus Rock1-15]
 gi|229117986|ref|ZP_04247346.1| Spore germination protein gerE [Bacillus cereus Rock1-3]
 gi|229129784|ref|ZP_04258751.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4]
 gi|229135330|ref|ZP_04264123.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196]
 gi|229141231|ref|ZP_04269770.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26]
 gi|229147058|ref|ZP_04275418.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24]
 gi|229152693|ref|ZP_04280880.1| Spore germination protein gerE [Bacillus cereus m1550]
 gi|229158108|ref|ZP_04286177.1| Spore germination protein gerE [Bacillus cereus ATCC 4342]
 gi|229169225|ref|ZP_04296939.1| Spore germination protein gerE [Bacillus cereus AH621]
 gi|229180765|ref|ZP_04308103.1| Spore germination protein gerE [Bacillus cereus 172560W]
 gi|229186733|ref|ZP_04313891.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1]
 gi|229192698|ref|ZP_04319657.1| Spore germination protein gerE [Bacillus cereus ATCC 10876]
 gi|229602349|ref|YP_002868773.1| germination protein GerE [Bacillus anthracis str. A0248]
 gi|254724584|ref|ZP_05186367.1| germination protein GerE [Bacillus anthracis str. A1055]
 gi|254736592|ref|ZP_05194298.1| germination protein GerE [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741630|ref|ZP_05199317.1| germination protein GerE [Bacillus anthracis str. Kruger B]
 gi|254754772|ref|ZP_05206807.1| germination protein GerE [Bacillus anthracis str. Vollum]
 gi|254757604|ref|ZP_05209631.1| germination protein GerE [Bacillus anthracis str. Australia 94]
 gi|296504976|ref|YP_003666676.1| germination protein gerE [Bacillus thuringiensis BMB171]
 gi|301056000|ref|YP_003794211.1| germination protein [Bacillus anthracis CI]
 gi|29898138|gb|AAP11412.1| Germination protein gerE [Bacillus cereus ATCC 14579]
 gi|30259216|gb|AAP28421.1| germination protein GerE [Bacillus anthracis str. Ames]
 gi|47505171|gb|AAT33847.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181307|gb|AAT56683.1| germination protein GerE [Bacillus anthracis str. Sterne]
 gi|49333059|gb|AAT63705.1| germination protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51974481|gb|AAU16031.1| germination protein [Bacillus cereus E33L]
 gi|74491766|gb|EAO54960.1| Germination protein gerE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118418879|gb|ABK87298.1| germination protein [Bacillus thuringiensis str. Al Hakam]
 gi|163864429|gb|ABY45488.1| transcriptional regulator, LuxR family [Bacillus weihenstephanensis
           KBAB4]
 gi|164712820|gb|EDR18350.1| germination protein GerE [Bacillus anthracis str. A0488]
 gi|167510387|gb|EDR85788.1| germination protein GerE [Bacillus anthracis str. A0193]
 gi|167529046|gb|EDR91801.1| germination protein GerE [Bacillus anthracis str. A0442]
 gi|170126738|gb|EDS95621.1| germination protein GerE [Bacillus anthracis str. A0389]
 gi|172081631|gb|EDT66702.1| germination protein GerE [Bacillus anthracis str. A0174]
 gi|190561962|gb|EDV15931.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I]
 gi|195992898|gb|EDX56857.1| germination protein GerE [Bacillus cereus W]
 gi|196024208|gb|EDX62881.1| germination protein GerE [Bacillus cereus 03BB108]
 gi|196029963|gb|EDX68564.1| germination protein GerE [Bacillus cereus NVH0597-99]
 gi|206735209|gb|EDZ52377.1| germination protein GerE [Bacillus cereus AH1134]
 gi|206745859|gb|EDZ57256.1| germination protein GerE [Bacillus cereus H3081.97]
 gi|217063730|gb|ACJ77980.1| germination protein GerE [Bacillus cereus AH187]
 gi|218159823|gb|ACK59815.1| germination protein GerE [Bacillus cereus B4264]
 gi|218543532|gb|ACK95926.1| germination protein GerE [Bacillus cereus G9842]
 gi|225786008|gb|ACO26225.1| germination protein GerE [Bacillus cereus 03BB102]
 gi|227004247|gb|ACP13990.1| germination protein GerE [Bacillus anthracis str. CDC 684]
 gi|228590788|gb|EEK48648.1| Spore germination protein gerE [Bacillus cereus ATCC 10876]
 gi|228596746|gb|EEK54408.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1]
 gi|228602743|gb|EEK60226.1| Spore germination protein gerE [Bacillus cereus 172560W]
 gi|228614291|gb|EEK71402.1| Spore germination protein gerE [Bacillus cereus AH621]
 gi|228625337|gb|EEK82095.1| Spore germination protein gerE [Bacillus cereus ATCC 4342]
 gi|228630756|gb|EEK87398.1| Spore germination protein gerE [Bacillus cereus m1550]
 gi|228636446|gb|EEK92916.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24]
 gi|228642272|gb|EEK98564.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26]
 gi|228648128|gb|EEL04170.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196]
 gi|228653700|gb|EEL09571.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4]
 gi|228665435|gb|EEL20917.1| Spore germination protein gerE [Bacillus cereus Rock1-3]
 gi|228671525|gb|EEL26825.1| Spore germination protein gerE [Bacillus cereus Rock1-15]
 gi|228678305|gb|EEL32531.1| Spore germination protein gerE [Bacillus cereus Rock3-28]
 gi|228684455|gb|EEL38398.1| Spore germination protein gerE [Bacillus cereus Rock3-29]
 gi|228689795|gb|EEL43601.1| Spore germination protein gerE [Bacillus cereus Rock3-42]
 gi|228701597|gb|EEL54090.1| Spore germination protein gerE [Bacillus cereus Rock4-2]
 gi|228711163|gb|EEL63128.1| Spore germination protein gerE [Bacillus cereus F65185]
 gi|228717165|gb|EEL68841.1| Spore germination protein gerE [Bacillus cereus AH603]
 gi|228723192|gb|EEL74568.1| Spore germination protein gerE [Bacillus cereus AH676]
 gi|228729150|gb|EEL80150.1| Spore germination protein gerE [Bacillus cereus AH1271]
 gi|228747622|gb|EEL97496.1| Spore germination protein gerE [Bacillus mycoides DSM 2048]
 gi|228772014|gb|EEM20469.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228778399|gb|EEM26666.1| Spore germination protein gerE [Bacillus thuringiensis Bt407]
 gi|228785007|gb|EEM33020.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792084|gb|EEM39663.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228798900|gb|EEM45876.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228804889|gb|EEM51487.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228811571|gb|EEM57908.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228817889|gb|EEM63967.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228823866|gb|EEM69686.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830116|gb|EEM75734.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228836449|gb|EEM81800.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228842546|gb|EEM87636.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228849275|gb|EEM94113.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200]
 gi|228856611|gb|EEN01132.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222]
 gi|229266757|gb|ACQ48394.1| germination protein GerE [Bacillus anthracis str. A0248]
 gi|296326028|gb|ADH08956.1| germination protein gerE [Bacillus thuringiensis BMB171]
 gi|300378169|gb|ADK07073.1| germination protein [Bacillus cereus biovar anthracis str. CI]
 gi|324328393|gb|ADY23653.1| germination protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942284|gb|AEA18180.1| germination protein gerE [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 74

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|320106073|ref|YP_004181663.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924594|gb|ADV81669.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 239

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 43/85 (50%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           + L+ A    M K+      K F LT RE+E +  I EG ++ ++A    IS  TV  ++
Sbjct: 152 VNLVMALHGLMQKAAAQPERKTFGLTPRELEVVGCIVEGCSNKDVARQFNISEETVKRHL 211

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           ++I  KT   TR     +A+ + +V
Sbjct: 212 SNIFDKTGVSTRLELALFAISHKLV 236


>gi|298252386|ref|ZP_06976187.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297545702|gb|EFH79572.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 202

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 44/93 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +++ R  +     +   N+   +         L  RE+E L  ++EG+++ EIA  L ++
Sbjct: 109 VVQSRFPDFAHHNSEPHNISSPHQPVQQSLVTLNKRELEVLRLLAEGRSNQEIADTLIVA 168

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++T+  ++  I  K    +R+ AI  A +   +
Sbjct: 169 KSTIKWHLKQIYSKLNVHSRTQAIVCARQIGFL 201


>gi|258652644|ref|YP_003201800.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258555869|gb|ACV78811.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 220

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G+   LT RE E L  I++G+ + EIA +  +S NT+ +YI S+ RK    +R+ A+ +
Sbjct: 142 PGRAEGLTDREAEILALITQGRGNAEIASMTYLSPNTIKSYIRSVYRKIGVSSRTQAVLW 201

Query: 240 AVRNN 244
            V + 
Sbjct: 202 GVHHG 206


>gi|284032390|ref|YP_003382321.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811683|gb|ADB33522.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 228

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTS 203
           +L+         + L    +     +++  +     G    EL+GR +E +  I+ G+T+
Sbjct: 113 LLVEAVRAACNGEALVSPSITLRLLSHLNATAPRGRGMPSPELSGRALEVVRAIARGRTN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS +TV +++A+I  K   + R+    +A  N++V
Sbjct: 173 QEIAAELFISLSTVKSHLAAIQAKLGVRNRTEIAVWAWENHLV 215


>gi|239827940|ref|YP_002950564.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808233|gb|ACS25298.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70]
          Length = 74

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +     LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A
Sbjct: 3   DKSFQPKPLLTKREREIFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQA 62

Query: 237 IAYAVRNN 244
           +   +R  
Sbjct: 63  VIELLRMG 70


>gi|332710029|ref|ZP_08429984.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332351172|gb|EGJ30757.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 241

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT RE+  L  I  G T+DEIA  L +   TV  +I S++ K     R+ A   A+
Sbjct: 176 RENPLTERELTVLELIVAGYTNDEIAERLLLGLGTVKTHIRSVLWKLCCDDRTQAAVQAL 235

Query: 242 RNNIV 246
           R+ +V
Sbjct: 236 RSGLV 240


>gi|325510834|gb|ADZ22470.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 217

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  +T RE+  L  I+ G  S EIA  +GIS  TV  ++ +I  K    +RS A+A A+ 
Sbjct: 150 NASITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIE 209

Query: 243 NNIV 246
             I+
Sbjct: 210 KGII 213


>gi|323156843|gb|EFZ42977.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli EPECa14]
          Length = 203

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 122 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 181

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 182 FKKIAVKNRTQAVSWA 197


>gi|307295298|ref|ZP_07575137.1| transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878801|gb|EFN10020.1| transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 222

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-------F 184
            +    +RI +  +  F   R  L   L     L    ++ F +   H  +         
Sbjct: 83  PVHLPFSRIGMVALSCFDNLRADLSAELKRHYYLIHLLSHFFINDYAHLSRKDRWLPTWA 142

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  EV CL WI  GKT DE+A I+G +R T+  ++ +  +K     R+ A+  A +  
Sbjct: 143 ALTPLEVSCLRWIGRGKTDDEVAAIMGRARPTIRFHLQNAAKKLGAVNRTQAVFLAAQLG 202

Query: 245 IV 246
            +
Sbjct: 203 FL 204


>gi|226310381|ref|YP_002770275.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093329|dbj|BAH41771.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 199

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 42/82 (51%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++A  +    +  D  +G++  LT RE E L  +++GK + EIA  L I+  TV NYI+
Sbjct: 115 SIMAGRRIYAPELVDEAYGQENPLTEREKEVLLLVADGKNTKEIASQLYITTGTVRNYIS 174

Query: 223 SIMRKTATKTRSGAIAYAVRNN 244
            I+ K     R  AI ++    
Sbjct: 175 VILDKLGVSNRIEAIMHSKEKG 196


>gi|222149565|ref|YP_002550522.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736547|gb|ACM37510.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 312

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 33/69 (47%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L    A      D    + F LT RE E L WI+ GK + +I  ILG++  TVN ++  I
Sbjct: 230 LFRLSAANPHREDERLRQAFGLTQRESEVLLWIARGKPNRDIGEILGLAARTVNKHLEQI 289

Query: 225 MRKTATKTR 233
             K   + R
Sbjct: 290 YVKLGVENR 298


>gi|119715261|ref|YP_922226.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535922|gb|ABL80539.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 218

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 9/169 (5%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            P  ++  + + E D      +         +       L E +    G       L  D
Sbjct: 48  HPDVVLMDIRMPELDGLEATRRILAAGDTARVLVLTTFNLDEYVYEALGAGASGFVLKDD 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
                I  +     G  +L   +    ++  +     +           LTGRE+E    
Sbjct: 108 PPEQLIAAVRTIADGDALLSPTVTRR-VIREFTRLRRQPPPAAVAT---LTGRELEVFRL 163

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I++G ++ EI   L IS  TV  ++  + +K   + R+ AI  A +  I
Sbjct: 164 ITQGLSNAEIGRELFISDTTVKTHVTRLFQKLDLRDRAQAIVLAYQTGI 212


>gi|307244636|ref|ZP_07526740.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492017|gb|EFM64066.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 216

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++ L  I++G ++ EIA  L +S  TV NYI+SI+ K   + R+    Y ++
Sbjct: 159 LSEREIDVLELIADGLSNKEIAGKLYLSEGTVRNYISSILVKLDLRDRTQLAIYYLK 215


>gi|295134891|ref|YP_003585567.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Zunongwangia profunda SM-A87]
 gi|294982906|gb|ADF53371.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Zunongwangia profunda SM-A87]
          Length = 207

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWIS 198
           +   L        +I   R   IG  A Y+ +     ++  W  DF+LT RE+E L  I 
Sbjct: 100 VAGYLPKFVHTNELIEAIRKVRIGETAFYEEHTKAVSNIKIWTSDFKLTNRELEILQLIK 159

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +GK++ EI+ IL  S+ T+  +  +++RK   K  SG + +A++N
Sbjct: 160 DGKSTKEISEILHRSQFTIETHRKNMIRKLNLKNSSGLLHFAMKN 204


>gi|271967487|ref|YP_003341683.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510662|gb|ACZ88940.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 239

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 3/145 (2%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +     L    F      +         +         +   +  +      +    L  
Sbjct: 82  VPDCRVLALSTFDLDEYVVGALRAGAYGFLPKDSSPEDLSAAIRTVHAGEAAVAPRLLTR 141

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +        +  +      G   ELT REVE    ++ G  +  I+  L IS +TV NYI
Sbjct: 142 LISTYVRAPHGTRPTPTGLG---ELTPREVEVWRLMATGLDNTGISRTLDISLSTVKNYI 198

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            SI  K A + R+ A+  A  + +V
Sbjct: 199 TSIFDKLAVRDRAQAVIVAYESGLV 223


>gi|269794993|ref|YP_003314448.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097178|gb|ACZ21614.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 258

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F              + +       A +R  +  +     ++  D L      +      
Sbjct: 122 FDLDDRAAAAIRYGASGFLLKDATPAMLRDAIRTVHAGNAVLAPDDL------STLLDGR 175

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F++         +LT +E E L  ++ G  + EIA    +S +TV  ++ +++RK   + 
Sbjct: 176 FRARRPSPPGLEDLTPKEREVLAAVAAGLNNAEIARRAFVSESTVKTHVGAVLRKLGLRD 235

Query: 233 RSGAIAYAVRNNIV 246
           R   +  A  + +V
Sbjct: 236 RVQVVVLAHEHGLV 249


>gi|222081319|ref|YP_002540682.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725998|gb|ACM29087.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 275

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           + +F + ++ +G  ++ P     + D       +AA      +  +        L+ RE 
Sbjct: 158 AKSFALKQLALGDAIICPDAGSDVFDVHEHDAHMAAAPVQTTRIVNGVRN----LSPREK 213

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             L  +  G+++ +IA  L I+ +TV  +I +I+RK   + R+ A  +A+
Sbjct: 214 SILKLVMGGESNKQIARRLEITESTVKVHIKTILRKIDVRNRTQAAIWAM 263


>gi|120404945|ref|YP_954774.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957763|gb|ABM14768.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
          Length = 301

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    G+   LT RE+E L +++EG T+  IA  L IS  TV  ++  I+RK    
Sbjct: 223 QPPGARAPSGRAHSLTRRELEVLEFVAEGATNARIARALTISEGTVKGHMKHILRKLGAA 282

Query: 232 TRSGAIAYAVRNN 244
            R+ A+++ +  N
Sbjct: 283 NRAEAVSHWLHLN 295


>gi|256396070|ref|YP_003117634.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362296|gb|ACU75793.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 225

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 13/182 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNR 129
            +V    P  +V  + +   D           P      V  T  ++      +    + 
Sbjct: 42  RLVRELHPDVVVMDIRMPGMDGIEATRQATAEPDPPKILVLTTFDDDEYVYGALRAGASG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDF 184
           +   +  +  I   + ++     +I         L+A + A             H  +  
Sbjct: 102 FLLKSMALDAILDAIRVVAAGDALIAPSVTRR--LIADFTATPTTPKPHPEPLEHPHQIA 159

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T RE E L  + +G ++ EIA  L IS  T   ++A +  K   + R      A  + 
Sbjct: 160 QITDREREVLALVGQGLSNAEIAERLIISAATAKTHVARLFAKLEARDRVHLAIIAFESG 219

Query: 245 IV 246
           +V
Sbjct: 220 LV 221


>gi|239928878|ref|ZP_04685831.1| chitinase two-component response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437205|ref|ZP_06576595.1| response-regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291340100|gb|EFE67056.1| response-regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 213

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 5/167 (2%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           P  ++  + +   D        V +R  ++       L E +            L    A
Sbjct: 48  PDLVLMDVQMPRLDGVSATRQVVGERLADVLVLTTFDLDEYVFGALRAGAAGFLLKNTEA 107

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           +  +  +    +G  I+   +    L+A + A   +  +        LT RE E L+ + 
Sbjct: 108 KDLVAAVRTVARGEGIVAPAVTRR-LIAEFAAKPARRTEADPAVLESLTRREREVLSCLG 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG ++  IA  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 167 EGLSNAGIADRLDMAEATVKTHVSRLLGKLGLRSRVQAAVLAQELGI 213


>gi|23466193|ref|NP_696796.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23326934|gb|AAN25432.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 231

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|121998744|ref|YP_001003531.1| two component LuxR family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121590149|gb|ABM62729.1| two component transcriptional regulator, LuxR family
           [Halorhodospira halophila SL1]
          Length = 217

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G+++  IA  LGIS  TV  ++ S++RK    +R  A   AV   +
Sbjct: 152 LTPRERDILERLAAGESNKVIARHLGISDGTVKLHVKSVLRKLGVHSRVEAAIKAVDFGL 211


>gi|328951348|ref|YP_004368683.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451672|gb|AEB12573.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 217

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 5/164 (3%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPT-ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           F +   +   +       ++R   E+   VF   PE        +    +    V +   
Sbjct: 51  FLVDTRLEDVDAFVVVGEVRRARPEVRVVVFSAQPEAREVRQAYEAGAAAF---VEKRAD 107

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGK 201
              LL    R+   +RL +    AA    +      V   +   L  RE+E L  +++G 
Sbjct: 108 LGALLQVIRRVRRGERLLDAARAAAIVQELEAGQRAVWARRAARLAARELEILQLLAQGC 167

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  LG+S  TV N ++ +  K   + R+ A  +AVR  I
Sbjct: 168 SNQEIADALGLSEKTVRNRLSEVFAKLGAQNRTQAALFAVRAGI 211


>gi|304398340|ref|ZP_07380214.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304354206|gb|EFM18579.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 209

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL---LAAYQANMFKSYDVHWG 181
           G+ +R   LT   AR  I  M+       +L+D   EI L   L A +     S  V   
Sbjct: 77  GISSRILVLTVSDARSDIFAMVDAGADGYLLKDSEPEILLGHILQASRGEKVFSEGVASY 136

Query: 182 KDFE---------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            D           LT RE + L  ++ G ++ EIA IL IS  TV  +I +++RK   ++
Sbjct: 137 LDNRQHSADPLRLLTDRECDVLQEVARGLSNKEIAAILHISEETVKVHIRNLLRKLDVRS 196

Query: 233 RSGAIAY 239
           R  A   
Sbjct: 197 RVAATVM 203


>gi|262164491|ref|ZP_06032229.1| transcriptional regulator VpsT [Vibrio mimicus VM223]
 gi|262026871|gb|EEY45538.1| transcriptional regulator VpsT [Vibrio mimicus VM223]
          Length = 224

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSD 204
           L+    +++L +      L   Y  +      V   + + +LT RE + +  +  G ++ 
Sbjct: 118 LIKGMSKVLLDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNI 177

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 178 EIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217


>gi|82544494|ref|YP_408441.1| DNA-binding transcriptional regulator CsgD [Shigella boydii Sb227]
 gi|157160562|ref|YP_001457880.1| DNA-binding transcriptional regulator CsgD [Escherichia coli HS]
 gi|170020563|ref|YP_001725517.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ATCC
           8739]
 gi|188492464|ref|ZP_02999734.1| transcriptional regulator CsgD [Escherichia coli 53638]
 gi|300918637|ref|ZP_07135219.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|312971173|ref|ZP_07785351.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1827-70]
 gi|81245905|gb|ABB66613.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Shigella boydii Sb227]
 gi|157066242|gb|ABV05497.1| transcriptional regulator CsgD [Escherichia coli HS]
 gi|169755491|gb|ACA78190.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739]
 gi|188487663|gb|EDU62766.1| transcriptional regulator CsgD [Escherichia coli 53638]
 gi|300414180|gb|EFJ97490.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|309701312|emb|CBJ00613.1| probable csgab operon transcriptional regulator [Escherichia coli
           ETEC H10407]
 gi|310336375|gb|EFQ01561.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1827-70]
 gi|323937781|gb|EGB34045.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
 gi|332094032|gb|EGI99084.1| putative csgAB operon transcriptional regulatory protein [Shigella
           boydii 3594-74]
          Length = 216

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|113969495|ref|YP_733288.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|113884179|gb|ABI38231.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 225

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 85/218 (38%), Gaps = 17/218 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+  ++        + +L      S  + V W     Q+    + +D    L+  + +  
Sbjct: 19  RVGLVEDQQLVRQGIASLIAI---SQHIEVSWQAENGQEALKRLQTDAVDVLLSDIRMPV 75

Query: 95  KDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLF 148
            D    + Q R  +   PV      + +           N +      + ++   + ++ 
Sbjct: 76  LDGLSLLKQLRAAQNSIPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLEAIEIVA 135

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G +I    L ++   +A   +            + L+ RE E L +++ G ++ EIA 
Sbjct: 136 QGGHLIEPSVLEQMQQSSATAQS--------GPTHYLLSEREREILGFMAGGFSNKEIAN 187

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + ++  TV N++++I+ K   + R+ A+   ++ +++
Sbjct: 188 AVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI 225


>gi|318060080|ref|ZP_07978803.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318080793|ref|ZP_07988125.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 239

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 57/170 (33%), Gaps = 10/170 (5%)

Query: 83  PFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLTFD 136
           P   V  +A+      +    L R       +  T+ +N              Y   +  
Sbjct: 72  PDLAVLDIAMPRMTGLQAARELSRALPGLRMIVLTMYDNEQFFFEALKAGAGGYVLKSLA 131

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +             +         L+  Y     +  +   G    LT RE E L  
Sbjct: 132 DRDLIEACRAAMRDEPFLYPGATG--ALIRNYLDQARRGEEPAGGS--TLTPREEEILKL 187

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG +S +IA +L IS  TV  + A+ + K   K R     YA+R  +V
Sbjct: 188 VAEGHSSKDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 237


>gi|84495477|ref|ZP_00994596.1| putative two-component response regulator [Janibacter sp. HTCC2649]
 gi|84384970|gb|EAQ00850.1| putative two-component response regulator [Janibacter sp. HTCC2649]
          Length = 234

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 3/137 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQA 170
           F  L    +     ++    L   +  +  G  LL P+   R+I        G  AA   
Sbjct: 87  FDALRAGASGFLLKNSDPEQLVDAIRSVAGGHALLAPEVTTRVIAAMVGTGAGAAAATAT 146

Query: 171 NMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
               S           LT RE+E L  +  G+++ EIA  L +   T+  ++++ + K  
Sbjct: 147 PGTGSTSPGSADQISRLTDRELEVLILMGRGRSNAEIAADLFLGEATIKTHVSNCLAKLH 206

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R  A+ +A    ++
Sbjct: 207 LRDRVQAVVFAYEVGLI 223


>gi|333028632|ref|ZP_08456696.1| putative LuxR family DNA-binding response regulator [Streptomyces
           sp. Tu6071]
 gi|332748484|gb|EGJ78925.1| putative LuxR family DNA-binding response regulator [Streptomyces
           sp. Tu6071]
          Length = 212

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 57/170 (33%), Gaps = 10/170 (5%)

Query: 83  PFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLTFD 136
           P   V  +A+      +    L R       +  T+ +N              Y   +  
Sbjct: 45  PDLAVLDIAMPRMTGLQAARELSRALPGLRMIVLTMYDNEQFFFEALKAGAGGYVLKSLA 104

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +             +         L+  Y     +  +   G    LT RE E L  
Sbjct: 105 DRDLIEACRAAMRDEPFLYPGATG--ALIRNYLDQARRGEEPAGGS--TLTPREEEILKL 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG +S +IA +L IS  TV  + A+ + K   K R     YA+R  +V
Sbjct: 161 VAEGHSSKDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 210


>gi|284008814|emb|CBA75576.1| quorum-sensing transcriptional activator [Arsenophonus nasoniae]
          Length = 257

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  EIA ILGI   TV  +I S+++K        AI   V   +
Sbjct: 192 FSPRENEILYWASMGKTYSEIATILGIKLGTVKFHIGSVVKKLGVMNAKHAIRLGVELQL 251

Query: 246 V 246
           +
Sbjct: 252 I 252


>gi|253686983|ref|YP_003016173.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753561|gb|ACT11637.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 204

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L+ R+ E L  I+ G ++ +I+  L IS  TV +++ SI R+   + R+ A  
Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|311893888|dbj|BAJ26296.1| putative LuxR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 117

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +  G ++ E+A  L +S  TV  ++A I  K   + R+ A+  A    +
Sbjct: 50  LTPRELEVLALLGRGLSTTELAGELTLSEATVKTHVARIFAKLGLRDRAQAVVVAYETGL 109

Query: 246 V 246
           V
Sbjct: 110 V 110


>gi|238788099|ref|ZP_04631894.1| Two component transcriptional regulator, LuxR family [Yersinia
           frederiksenii ATCC 33641]
 gi|238723686|gb|EEQ15331.1| Two component transcriptional regulator, LuxR family [Yersinia
           frederiksenii ATCC 33641]
          Length = 194

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------------GLLAAYQANM 172
           G+D R   LT   AR  +  M+       +L+D   EI             + +   A  
Sbjct: 61  GVDARIIVLTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRHAAKGEKVFSNEVAQY 120

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 121 LSSRHEQVNPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 180

Query: 233 RSGAIAYAVRNN 244
           R  A    + N 
Sbjct: 181 RVAATIMFLENK 192


>gi|261338216|ref|ZP_05966100.1| two-component system response regulator [Bifidobacterium gallicum
           DSM 20093]
 gi|270276862|gb|EFA22716.1| two-component system response regulator [Bifidobacterium gallicum
           DSM 20093]
          Length = 230

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 5/144 (3%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V  +  +           Y + T +   +   +  +  +G  +   +L    +L
Sbjct: 89  AFLALSVSDSAQDVGAVIRAGARGYVTKTINATDLVAAIHQVS-EGYAVFSPKLAGF-VL 146

Query: 166 AAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           +A+Q       D     D EL   + RE E +  I+ G T  E+A  L IS  TV  +++
Sbjct: 147 SAFQGAPAAGADNDVNADEELDRLSSREQEVMRLIARGYTYREVAAELFISVKTVETHMS 206

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK     RS    +A    I+
Sbjct: 207 AVLRKLQLSNRSELTRWATVRRII 230


>gi|209520820|ref|ZP_03269564.1| cyclic nucleotide-binding protein [Burkholderia sp. H160]
 gi|209498735|gb|EDZ98846.1| cyclic nucleotide-binding protein [Burkholderia sp. H160]
          Length = 344

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 13/178 (7%)

Query: 78  VSSDWPFD-----LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN----ITPPAGMDN 128
           +++ WP D     +V                R      PV   L       +        
Sbjct: 35  LTTSWPNDRKPDCVVMDGDCLRLASDELEAARRHSRTTPVIVLLSNAQRQHVDELIAAGV 94

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDF 184
             C      + +    + L   G + L   L    L     A   +        H     
Sbjct: 95  SGCVEKSASSELLFSALRLAFAGGVYLPRSLVAASLHEPLAAAGAEADALRGPPHPDPHL 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LT R++E L  ++ G+++  IA  L +S  T+  ++ +I +     +R  A   A R
Sbjct: 155 HLTPRQIEVLALLARGRSNKMIARQLDVSEATIKTHLTTIFKALNVSSRGEASIVAAR 212


>gi|239621538|ref|ZP_04664569.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515413|gb|EEQ55280.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 231

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|254516347|ref|ZP_05128406.1| putative transcriptional regulator [gamma proteobacterium NOR5-3]
 gi|219674770|gb|EED31137.1| putative transcriptional regulator [gamma proteobacterium NOR5-3]
          Length = 934

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++   + +I   L IS +TV +++  + +K     R  AIA A+R  
Sbjct: 866 DLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKAMRVG 925

Query: 245 IV 246
           ++
Sbjct: 926 LL 927


>gi|254516346|ref|ZP_05128405.1| transcriptional regulator [gamma proteobacterium NOR5-3]
 gi|219674769|gb|EED31136.1| transcriptional regulator [gamma proteobacterium NOR5-3]
          Length = 925

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++   + +I   L IS +TV +++  + +K     R  AIA A R  
Sbjct: 857 DLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKATRTG 916

Query: 245 IV 246
           ++
Sbjct: 917 LL 918


>gi|329938540|ref|ZP_08287965.1| luxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302513|gb|EGG46404.1| luxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 2/167 (1%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V +  P   V  + L + D      +  + +       L       A +D+     +  V
Sbjct: 54  VPALRPHVAVLDVRLPDGDGVSVCRELRSHMPELACLMLTSFDDEEALLDSIMAGASGYV 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195
            +   G  L+     +     L +    A   A +    +     +    LT RE E L 
Sbjct: 114 LKQIQGSDLVSAVRTVAAGQSLLDANATARLLARLRGGQEQEEEAEALPGLTPREREILA 173

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A +
Sbjct: 174 LIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRVQAAVIATQ 220


>gi|326331931|ref|ZP_08198217.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325950244|gb|EGD42298.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 219

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 12/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    T           L   V R+  G  +  P    +         +L  +Q +
Sbjct: 94  VLAAVKAGATGYLVKSASREELLDAVERVAAGDPVFTPGLAGL---------VLGEFQHS 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + +V   K   LT RE E L  +++G +  +IA  L +S  TV N++ + +RK    
Sbjct: 145 A--ATEVRGDKPT-LTDRETEILKLVAKGLSYRQIADRLVLSHRTVQNHVQNTLRKLQMH 201

Query: 232 TRSGAIAYAVRNNI 245
            R     YA+   +
Sbjct: 202 NRVELTRYAIEQGL 215


>gi|226314788|ref|YP_002774684.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226097738|dbj|BAH46180.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 856

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 3/123 (2%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +         Y     D       ++    K + + +  +  + +L       F + D+ 
Sbjct: 726 MAVTLAAPEGYVRTFLDEGSGVAKMLYSLYKSKNVSKQEMAYLSMLLKSVEKEFPTLDIQ 785

Query: 180 WGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   +LT RE E L  I EG ++ +IA  L ++  TV  ++  I  K   K R+ A
Sbjct: 786 IRVSPALEKLTERESEVLALIGEGLSNSDIADKLHLTLGTVKGHVHQIFSKLQVKNRAQA 845

Query: 237 IAY 239
           I  
Sbjct: 846 IVR 848


>gi|126660738|ref|ZP_01731836.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126617979|gb|EAZ88750.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 245

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           ++ EI  L      M  S          LT +E+E L  I  G  + +IA  L ++  TV
Sbjct: 164 QMREIDALDEDTQQMINSS--------SLTPKELEVLELIVAGCNNAQIAERLFVTVGTV 215

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ SI+ K     R+ A   A+R+ +V
Sbjct: 216 KTHVRSILNKLCANDRTQAAVRALRSGLV 244


>gi|317506347|ref|ZP_07964159.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255357|gb|EFV14615.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 225

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 12/146 (8%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V  +  + I         Y + +     +   +  +     +           
Sbjct: 87  PKFLALSVSDSAADVIALIRAGARGYVTKSISGDDLAESVRRVASGDAVFSPG------- 139

Query: 165 LAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           LA +  + F S  V            LT RE++ L  ++ G T  EIA  L IS  TV  
Sbjct: 140 LAGFVLDAFASAAVAEEPVSNPDLDSLTPRELDVLRLLARGYTYREIASELFISVKTVET 199

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245
           + ++++RKT    R+    +A    I
Sbjct: 200 HTSNVLRKTQQSNRNALTWWAKDQKI 225


>gi|302867540|ref|YP_003836177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506060|ref|YP_004084947.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570399|gb|ADL46601.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412679|gb|ADU10796.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 215

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +L+         D L    +      ++         +   L+ RE+E +  I+ G+T+ 
Sbjct: 113 LLVEAVRAAYQGDALVSPSVTVRLLRHLTPPAPPRDERRPALSEREIEVVREIARGRTNL 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   L IS +TV ++++++  K   + R+    +A  + +V
Sbjct: 173 EIGAELFISLSTVKSHVSAVQTKLGLRNRTEIAVWAWEHRVV 214


>gi|86740241|ref|YP_480641.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86567103|gb|ABD10912.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 357

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 9/140 (6%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLA 166
           +  P+   +P  +  P        SL      ++    +        LR R+  +  LL 
Sbjct: 225 VQVPIQGGVPGAVPFPRMPGLPRESLRLAYRELQE---VTEHVADPFLRGRIGGVSELLR 281

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
              A   K+          LT RE+E L  +S G ++ E A  L +S  TV  Y+ SIMR
Sbjct: 282 GLLAEETKTVG-----RLTLTPRELEVLAQVSLGLSNVETARRLTVSPETVKAYLRSIMR 336

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   + R+ A+  A +  ++
Sbjct: 337 KLGVRNRTAAVHAARQMGML 356


>gi|194428408|ref|ZP_03060948.1| transcriptional regulator CsgD [Escherichia coli B171]
 gi|260843280|ref|YP_003221058.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O103:H2 str. 12009]
 gi|194413460|gb|EDX29742.1| transcriptional regulator CsgD [Escherichia coli B171]
 gi|257758427|dbj|BAI29924.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O103:H2 str. 12009]
 gi|323163719|gb|EFZ49538.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli E128010]
          Length = 216

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|163759735|ref|ZP_02166820.1| putative two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
 gi|162283332|gb|EDQ33618.1| putative two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
          Length = 217

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 14/177 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF-------CPVFHTLPENITPPAGMDN 128
            +V +  P D+V C+ +S      N  +R    F         V               +
Sbjct: 44  DLVETHLP-DIV-CLDISMPGGGINAARRINATFPTVKIVMLTVSEADENVSDALEAGAS 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y       A++   L  +      I  D    + LL     N  K  +        LT 
Sbjct: 102 GYILKGIGAAQLVEALSSVASGQSYISPD--LAVRLLTVATNNTTKKPEHPID---NLTR 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE + L  ++ G ++ E+   L +   T+ +Y+ +I++K   + R  A   A    +
Sbjct: 157 REEQILQLVANGLSNKEVGAALDLQEKTIKHYMTNILQKLHVRNRVEAALLARDRGL 213


>gi|116070777|ref|ZP_01468046.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116066182|gb|EAU71939.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 228

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 25/218 (11%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
             +   +     +    E      ++       ++  L+ + S    F+L+ C    E+ 
Sbjct: 26  GKIALAMRGRFFLRCFCESFSEKTYIGCAVT-DEDSCLEYLRSDQ--FELLICTDQLERG 82

Query: 97  KYYNVLQRPTEL---FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
             Y ++++  E       V   L + I       +   ++                +  I
Sbjct: 83  NGYELVRKAKEQYPNLKVVVLALTDEIPVEHDKASWLEAVV--------------AEADI 128

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGKTSDEIAV 208
           I   +  E  +LA    + ++S  +  G+        LT RE E L  ++ G T  EIA 
Sbjct: 129 IEDQKPLEAAVLAVMGHHSYRSPSLRGGELPYLSCPRLTPREYEVLDRLARGMTDKEIAE 188

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  T   Y   +++      R  A+   +R  +V
Sbjct: 189 ALVVSEQTARTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226


>gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 242

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 21/184 (11%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP-----PAGMDNRYCSL 133
           P  ++  + +   + Y  +L++  E       PV     + +T           + Y S 
Sbjct: 59  PDLIISDVMMPRANGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISK 117

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW-----------EIGLLAAYQANMFKSYDVHWGK 182
            FD   +   +  +  +   +L++              +I  + +   +   +   +   
Sbjct: 118 PFDPDELAARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPTNSENKIN 177

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
               T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ 
Sbjct: 178 LPSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALE 237

Query: 243 NNIV 246
           NN+V
Sbjct: 238 NNLV 241


>gi|317969061|ref|ZP_07970451.1| DNA-binding response regulator [Synechococcus sp. CB0205]
          Length = 236

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REV+ L  ++ G  +  I   L +S  TV +++  I  K   K+R  A    +R  
Sbjct: 169 QLTPREVDILQLMAGGTENQGIGQRLHLSVETVKDHVRHIFHKLNAKSRIQAAVQGIRLG 228

Query: 245 IV 246
           +V
Sbjct: 229 LV 230


>gi|317124594|ref|YP_004098706.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588682|gb|ADU47979.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM
           43043]
          Length = 540

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 48/106 (45%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + +G +         L   L     L +  A       +  G    LT RE E L  ++ 
Sbjct: 434 VALGALGDDVSATAELTVALRTFSELGSEPARREVERLLGAGLPGGLTAREAEVLRLVAS 493

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G+T+ +IA  L +S  TV  ++++I  K A  +R+ A AYA  +++
Sbjct: 494 GRTNPQIAAELFLSDKTVARHLSNIFTKIAVTSRTAAAAYAREHDL 539


>gi|296388005|ref|ZP_06877480.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAb1]
 gi|313108838|ref|ZP_07794823.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa 39016]
 gi|310881325|gb|EFQ39919.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa 39016]
          Length = 234

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            + +       L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K     ++
Sbjct: 163 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 222


>gi|229590397|ref|YP_002872516.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229362263|emb|CAY49165.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 217

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 14/179 (7%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR- 129
           EQ L  IV  D    ++  +  +   +     QR   +   +F          A M+   
Sbjct: 47  EQLLPDIVILDIRMPVLNGLGAARLLQ-----QRLPAIKVVIFTMDDSPDHLEAAMNAGA 101

Query: 130 --YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   L  +      +         + A     M +           LT
Sbjct: 102 VGYLLKDASRNEVIEALQRVAAGEEALNT------AVSARLLRRMTERNAAGSLPTEHLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ +I   LGI+  T   ++  ++ K     R+ A    +   +V
Sbjct: 156 PRERQVLGLVANGMSNRQIGEHLGITTGTAKAHVERVIGKLGAADRTQAAVRGIALGLV 214


>gi|297202823|ref|ZP_06920220.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717613|gb|EDY61647.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 217

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            E  L+ +Y   + +  D+       +T RE E L  ++EG T+ EI  +L IS  TV  
Sbjct: 132 AERALVRSYLDRLHRGDDLPRRA---VTEREEEILKLVAEGHTTKEIGELLFISAKTVER 188

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           + A+++ K   + R     YA+R  ++
Sbjct: 189 HRANLLHKLGMRDRLELTRYAIRAGLI 215


>gi|297201229|ref|ZP_06918626.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197712908|gb|EDY56942.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 50/123 (40%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++  G+ ++     ++       +    +  +   +         
Sbjct: 96  RAGASGFLLKDASARQLAEGVRVVASGEALLAPSVTRRLITEFSKLSESPRLMAAAHTAY 155

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I++G ++ E+A  L ++ +T+  +++ I+ K   + R+ A  +A   
Sbjct: 156 GDLTDRETEVLILIAQGLSNQEMAERLLVAESTIKTHVSRILVKLGLRDRTQAAVFAYEA 215

Query: 244 NIV 246
            +V
Sbjct: 216 RLV 218


>gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 212

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 76/200 (38%), Gaps = 25/200 (12%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT------- 106
           +Y+    + ++  +  +E  L+ +  S  P  ++  + + E D Y   +++         
Sbjct: 27  DYLEFRGYEVITAENGREA-LEILEQSPVPDMIICDVMMPEMDGY-TFVEKLRDDSRTSW 84

Query: 107 --ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              LF        + I       + Y    F+   +   +       R+I        G 
Sbjct: 85  IPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACL--SRVIPPSMTSSSG- 141

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                        +    + ELT  E++ +  +++G  + EIA  L +S+ T+ ++++++
Sbjct: 142 -----------PTIQVPSNVELTPTELKVIQLVAQGMANREIAEKLNVSQRTIESHVSNM 190

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           + KT+   R+    +A+   
Sbjct: 191 LNKTSLHNRTELARWAIETK 210


>gi|126727388|ref|ZP_01743223.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126703383|gb|EBA02481.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 204

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++GK++ EIA  L I   TV  ++ ++ RK     R+ A   A    
Sbjct: 143 KLTKRECEVLKGLTKGKSNKEIARDLNIQEPTVKLHMKTLYRKIGAANRTQAALMAYEAG 202

Query: 245 I 245
           I
Sbjct: 203 I 203


>gi|15801157|ref|NP_287174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 EDL933]
 gi|15830671|ref|NP_309444.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. Sakai]
 gi|26247175|ref|NP_753215.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           CFT073]
 gi|30062564|ref|NP_836735.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a
           str. 2457T]
 gi|56479799|ref|NP_706950.2| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a
           str. 301]
 gi|91210188|ref|YP_540174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UTI89]
 gi|110641216|ref|YP_668946.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 536]
 gi|110805049|ref|YP_688569.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 5
           str. 8401]
 gi|117623229|ref|YP_852142.1| DNA-binding transcriptional regulator CsgD [Escherichia coli APEC
           O1]
 gi|157155649|ref|YP_001462271.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           E24377A]
 gi|168747192|ref|ZP_02772214.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754516|ref|ZP_02779523.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760623|ref|ZP_02785630.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767694|ref|ZP_02792701.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773880|ref|ZP_02798887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783565|ref|ZP_02808572.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4076]
 gi|168799314|ref|ZP_02824321.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC508]
 gi|191166943|ref|ZP_03028767.1| transcriptional regulator CsgD [Escherichia coli B7A]
 gi|193069453|ref|ZP_03050407.1| transcriptional regulator CsgD [Escherichia coli E110019]
 gi|194432391|ref|ZP_03064678.1| transcriptional regulator CsgD [Shigella dysenteriae 1012]
 gi|195935427|ref|ZP_03080809.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809483|ref|ZP_03251820.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815293|ref|ZP_03256472.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822315|ref|ZP_03262634.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396459|ref|YP_002269887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209918293|ref|YP_002292377.1| DNA-binding transcriptional regulator CsgD [Escherichia coli SE11]
 gi|215486249|ref|YP_002328680.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217328252|ref|ZP_03444334.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218553618|ref|YP_002386531.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI1]
 gi|218557921|ref|YP_002390834.1| DNA-binding transcriptional regulator CsgD [Escherichia coli S88]
 gi|218688993|ref|YP_002397205.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ED1a]
 gi|218694575|ref|YP_002402242.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 55989]
 gi|218704448|ref|YP_002411967.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           UMN026]
 gi|227886606|ref|ZP_04004411.1| LuxR family protein [Escherichia coli 83972]
 gi|237706978|ref|ZP_04537459.1| transcriptional regulator for 2nd curli operon [Escherichia sp.
           3_2_53FAA]
 gi|254792423|ref|YP_003077260.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. TW14359]
 gi|256018703|ref|ZP_05432568.1| DNA-binding transcriptional regulator CsgD [Shigella sp. D9]
 gi|260854523|ref|YP_003228414.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O26:H11 str. 11368]
 gi|260867403|ref|YP_003233805.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O111:H- str. 11128]
 gi|261227055|ref|ZP_05941336.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256289|ref|ZP_05948822.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282059|ref|YP_003498877.1| CsgD [Escherichia coli O55:H7 str. CB9615]
 gi|293404327|ref|ZP_06648321.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1412]
 gi|293433333|ref|ZP_06661761.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088]
 gi|298380106|ref|ZP_06989711.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1302]
 gi|300816738|ref|ZP_07096958.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300821183|ref|ZP_07101332.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300899554|ref|ZP_07117793.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300902427|ref|ZP_07120409.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300922561|ref|ZP_07138662.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300935178|ref|ZP_07150204.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300974342|ref|ZP_07172554.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|300982659|ref|ZP_07176243.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|301023209|ref|ZP_07187008.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|301051178|ref|ZP_07198008.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|301305026|ref|ZP_07211128.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|301328594|ref|ZP_07221655.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|306814112|ref|ZP_07448285.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101]
 gi|307310181|ref|ZP_07589831.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|309794973|ref|ZP_07689393.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|331652090|ref|ZP_08353109.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M718]
 gi|331657094|ref|ZP_08358056.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA206]
 gi|331662440|ref|ZP_08363363.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA143]
 gi|331667434|ref|ZP_08368298.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA271]
 gi|331672560|ref|ZP_08373349.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA280]
 gi|331676827|ref|ZP_08377523.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H591]
 gi|331682538|ref|ZP_08383157.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H299]
 gi|332279774|ref|ZP_08392187.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9]
 gi|12514569|gb|AAG55786.1|AE005314_14 putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. EDL933]
 gi|26107576|gb|AAN79775.1|AE016759_49 Probable csgAB operon transcriptional Regulatory protein
           [Escherichia coli CFT073]
 gi|13360877|dbj|BAB34840.1| transcriptional regulator for 2nd curli operon [Escherichia coli
           O157:H7 str. Sakai]
 gi|30040810|gb|AAP16541.1| probable csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 2457T]
 gi|56383350|gb|AAN42657.2| probable csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 301]
 gi|91071762|gb|ABE06643.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli UTI89]
 gi|110342808|gb|ABG69045.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli 536]
 gi|110614597|gb|ABF03264.1| Probable csgAB operon transcriptional Regulatory protein [Shigella
           flexneri 5 str. 8401]
 gi|115512353|gb|ABJ00428.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli APEC O1]
 gi|157077679|gb|ABV17387.1| transcriptional regulator CsgD [Escherichia coli E24377A]
 gi|171986605|gb|ACB59284.1| CsgD [Escherichia coli]
 gi|171986613|gb|ACB59291.1| CsgD [Escherichia coli]
 gi|171986621|gb|ACB59298.1| CsgD [Escherichia coli]
 gi|171986629|gb|ACB59305.1| CsgD [Escherichia coli]
 gi|187770420|gb|EDU34264.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018009|gb|EDU56131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999071|gb|EDU68057.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358200|gb|EDU76619.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363208|gb|EDU81627.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368715|gb|EDU87131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4501]
 gi|189378335|gb|EDU96751.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC508]
 gi|190903055|gb|EDV62780.1| transcriptional regulator CsgD [Escherichia coli B7A]
 gi|192957201|gb|EDV87650.1| transcriptional regulator CsgD [Escherichia coli E110019]
 gi|194419278|gb|EDX35360.1| transcriptional regulator CsgD [Shigella dysenteriae 1012]
 gi|208729284|gb|EDZ78885.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731941|gb|EDZ80629.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737800|gb|EDZ85483.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157859|gb|ACI35292.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209773728|gb|ACI85176.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773730|gb|ACI85177.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773732|gb|ACI85178.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773734|gb|ACI85179.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773736|gb|ACI85180.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209911552|dbj|BAG76626.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|215264321|emb|CAS08678.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli O127:H6 str. E2348/69]
 gi|217318679|gb|EEC27105.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218351307|emb|CAU97012.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli 55989]
 gi|218360386|emb|CAQ97938.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli IAI1]
 gi|218364690|emb|CAR02380.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli S88]
 gi|218426557|emb|CAR07385.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli ED1a]
 gi|218431545|emb|CAR12423.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli UMN026]
 gi|222032794|emb|CAP75533.1| csgAB operon transcriptional regulatory [Escherichia coli LF82]
 gi|226898188|gb|EEH84447.1| transcriptional regulator for 2nd curli operon [Escherichia sp.
           3_2_53FAA]
 gi|227836810|gb|EEJ47276.1| LuxR family protein [Escherichia coli 83972]
 gi|254591823|gb|ACT71184.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. TW14359]
 gi|257753172|dbj|BAI24674.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O26:H11 str. 11368]
 gi|257763759|dbj|BAI35254.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O111:H- str. 11128]
 gi|281178149|dbj|BAI54479.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|281600449|gb|ADA73433.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2002017]
 gi|284920864|emb|CBG33927.1| probable csgab operon transcriptional regulator [Escherichia coli
           042]
 gi|290761932|gb|ADD55893.1| CsgD [Escherichia coli O55:H7 str. CB9615]
 gi|291324152|gb|EFE63574.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088]
 gi|291428913|gb|EFF01938.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1412]
 gi|294494087|gb|ADE92843.1| transcriptional regulator CsgD [Escherichia coli IHE3034]
 gi|298279804|gb|EFI21312.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1302]
 gi|300297199|gb|EFJ53584.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|300307124|gb|EFJ61644.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|300356825|gb|EFJ72695.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300397133|gb|EFJ80671.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|300405459|gb|EFJ88997.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300410585|gb|EFJ94123.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|300421107|gb|EFK04418.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300459572|gb|EFK23065.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300526482|gb|EFK47551.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300530512|gb|EFK51574.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300839744|gb|EFK67504.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|300844986|gb|EFK72746.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|305852749|gb|EFM53197.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101]
 gi|306909899|gb|EFN40393.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|307553043|gb|ADN45818.1| csgAB operon transcriptional regulatory protein [Escherichia coli
           ABU 83972]
 gi|307627490|gb|ADN71794.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UM146]
 gi|308121277|gb|EFO58539.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|312945603|gb|ADR26430.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313650706|gb|EFS15107.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 2457T]
 gi|315060319|gb|ADT74646.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli W]
 gi|315253837|gb|EFU33805.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1]
 gi|315287407|gb|EFU46818.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3]
 gi|315291086|gb|EFU50449.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1]
 gi|315296668|gb|EFU55963.1| transcriptional regulator, LuxR family [Escherichia coli MS 16-3]
 gi|320189720|gb|EFW64376.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. EC1212]
 gi|320200932|gb|EFW75516.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli EC4100B]
 gi|320637492|gb|EFX07292.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. G5101]
 gi|320643053|gb|EFX12254.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H- str. 493-89]
 gi|320648510|gb|EFX17165.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H- str. H 2687]
 gi|320653825|gb|EFX21899.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659305|gb|EFX26874.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664439|gb|EFX31590.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323175733|gb|EFZ61327.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1180]
 gi|323190548|gb|EFZ75820.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli RN587/1]
 gi|323379120|gb|ADX51388.1| transcriptional regulator, LuxR family [Escherichia coli KO11]
 gi|323947348|gb|EGB43354.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           H120]
 gi|323953272|gb|EGB49138.1| luxR family protein regulatory protein [Escherichia coli H252]
 gi|323958052|gb|EGB53762.1| luxR family protein regulatory protein [Escherichia coli H263]
 gi|323966982|gb|EGB62408.1| luxR family protein regulatory protein [Escherichia coli M863]
 gi|323976586|gb|EGB71674.1| luxR family protein regulatory protein [Escherichia coli TW10509]
 gi|324007878|gb|EGB77097.1| transcriptional regulator, LuxR family [Escherichia coli MS 57-2]
 gi|324013311|gb|EGB82530.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1]
 gi|324017459|gb|EGB86678.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3]
 gi|324117387|gb|EGC11294.1| luxR family protein regulatory protein [Escherichia coli E1167]
 gi|326339260|gb|EGD63074.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. 1125]
 gi|326344780|gb|EGD68528.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. 1044]
 gi|327253435|gb|EGE65073.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli STEC_7v]
 gi|331050368|gb|EGI22426.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M718]
 gi|331055342|gb|EGI27351.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA206]
 gi|331060862|gb|EGI32826.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA143]
 gi|331065019|gb|EGI36914.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA271]
 gi|331070203|gb|EGI41569.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA280]
 gi|331075516|gb|EGI46814.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H591]
 gi|331080169|gb|EGI51348.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H299]
 gi|332088801|gb|EGI93913.1| putative csgAB operon transcriptional regulatory protein [Shigella
           boydii 5216-82]
 gi|332092876|gb|EGI97944.1| putative csgAB operon transcriptional regulatory protein [Shigella
           dysenteriae 155-74]
 gi|332102126|gb|EGJ05472.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9]
 gi|332758809|gb|EGJ89125.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 4343-70]
 gi|332759950|gb|EGJ90251.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2747-71]
 gi|332762241|gb|EGJ92509.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-671]
 gi|332767834|gb|EGJ98025.1| bacterial regulatory s, luxR family protein [Shigella flexneri
           2930-71]
 gi|333005819|gb|EGK25336.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri VA-6]
 gi|333019711|gb|EGK38984.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-304]
          Length = 216

 Score = 86.6 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|327481896|gb|AEA85206.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 836

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 8/162 (4%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L   +  +   +   +            H   + +   A +     +L     +  + 
Sbjct: 672 AALREQIEQNLAAQRLGLACECRFSLAEALHVDGQAVEAEAEV---RLALGEAARQHLVK 728

Query: 144 LMLLFPKGRI-----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +      +      +L     E       +            ++  L+ RE+  L  I+
Sbjct: 729 PLYELAHRQPQWLARVLPAVKGESLRQRLLRYEREPETTQAATEETVLSNRELTVLRLIA 788

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +G ++ EIA  L IS +TV  +   I  K     R+ A+A A
Sbjct: 789 QGCSNQEIAEQLFISLHTVKTHARRINTKLGVARRTQAVAKA 830


>gi|282856726|ref|ZP_06265990.1| two component transcriptional regulator, LuxR family
           [Pyramidobacter piscolens W5455]
 gi|282585422|gb|EFB90726.1| two component transcriptional regulator, LuxR family
           [Pyramidobacter piscolens W5455]
          Length = 215

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 38/73 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S D    +  +L+ RE E L   S+G    E+A  L I+  TV  +++S+  K   K +
Sbjct: 131 NSVDSASNELEQLSPREREVLLLSSQGFPVKEVAAKLFITERTVQAHLSSVYAKFGAKNK 190

Query: 234 SGAIAYAVRNNIV 246
           + A+  A++N I+
Sbjct: 191 TEALIIALKNGII 203


>gi|226309987|ref|YP_002769881.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092935|dbj|BAH41377.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 218

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 11/132 (8%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L                L   +  +  G+  L+P     L +              M
Sbjct: 93  FRVLQAGAAGYILKSAPDLDLITAIRSVNQGMAYLYPSATKSLIEEF----------LQM 142

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K+ +     D  LT RE E L  I++G ++ EIA  L +S  TV ++ A IM K   +T
Sbjct: 143 VKNGEEQAKYDI-LTDREKEVLVLIAKGFSNKEIAEQLTVSVKTVESHKAHIMEKLHLRT 201

Query: 233 RSGAIAYAVRNN 244
           R   + YA++  
Sbjct: 202 RPDLVRYAIKKG 213


>gi|31790496|emb|CAD56673.1| putative regulatory protein [Citrobacter freundii]
          Length = 216

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N     T D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYATEDEQRVVSGLQGVLRGECYFSQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|15896670|ref|NP_350019.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026518|gb|AAK81359.1|AE007840_3 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
          Length = 217

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  +T RE+  L  I+ G  S EIA  +GIS  TV  ++ +I  K    +RS A+A A+ 
Sbjct: 150 NASITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIE 209

Query: 243 NNIV 246
             I+
Sbjct: 210 KGII 213


>gi|319953755|ref|YP_004165022.1| two component transcriptional regulator, luxr family [Cellulophaga
           algicola DSM 14237]
 gi|319422415|gb|ADV49524.1| two component transcriptional regulator, LuxR family [Cellulophaga
           algicola DSM 14237]
          Length = 214

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 7/204 (3%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
           +   + ++         +L   +  Q +K  SI S+D    L+  + + E       L +
Sbjct: 14  FIDGLISILNEAPEFSVILTAKNGAQVEKYLSINSADNIHLLITDLTMPEMGGI--ELNK 71

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFD--VARIRIGLMLLFPKGRIILRDRLWEI 162
             +   P   TL  ++     M ++      D  V +      LL     II  ++ +  
Sbjct: 72  IVKSKYPSLKTLVVSMHIDGMMIDKLIKNNVDGYVPKNAEKEELLTAIRSIIKGEKYFSP 131

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +  AY   MF++  +   ++  LT RE E L  I+E  T+ EIA  L +S++T+ +Y  
Sbjct: 132 EIKKAYTDAMFENKKM---EEISLTDREKEVLKLIAEENTTQEIADKLFLSKHTIESYRK 188

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K   K  +G   +A++  ++
Sbjct: 189 NLISKLNVKNLAGLTKHALKMGLL 212


>gi|237730973|ref|ZP_04561454.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2]
 gi|226906512|gb|EEH92430.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2]
          Length = 216

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 46/87 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS
Sbjct: 124 ILRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNIEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
            NTV  ++ ++ +K A K R+ A+++A
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 225

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 75/199 (37%), Gaps = 22/199 (11%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107
           +Y+    + +   +  +E     I+  D P  ++  + + E D Y   +++  +      
Sbjct: 37  DYLEFRGYEVNTAENGREAL--EILEQDIPDMIICDVMMPEMDGY-TFVEQVRQNERTGW 93

Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              LF        + +       + Y    F+   +   +         + +   W+   
Sbjct: 94  IPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTTRWKEHQ 147

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
               +             D +LT  E++ + +++ G  + EIA  L +S+ TV ++++++
Sbjct: 148 AKGGENGSRIQVPF----DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 203

Query: 225 MRKTATKTRSGAIAYAVRN 243
           + KT    R+    +A+ N
Sbjct: 204 LGKTNLHNRTELARWAIEN 222


>gi|332668435|ref|YP_004451223.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332337249|gb|AEE54350.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 207

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG T+ EIA  L IS  TV+++  +++ K A K  +  I  A+ + +
Sbjct: 145 LTSREKEVLALIAEGLTNKEIADHLFISPLTVDSHRKNLLAKFAVKNTASLIKLAIEHGV 204

Query: 246 V 246
           +
Sbjct: 205 I 205


>gi|327405906|ref|YP_004346744.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327321414|gb|AEA45906.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 226

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 2/117 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     D + I   +   +   +      L  I   +    ++   ++    +   L+ R
Sbjct: 99  YIKKDCDSSEIIDSIRETWRGNKFFCGQILETIRDASIDVNDI--DFESFSCEPITLSER 156

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E +T ISEG T+  IA  L +S +T+N +  +IM K   K  +G + YAV+ N+V
Sbjct: 157 ETEIITMISEGLTNIMIADSLCLSNHTINTHRKNIMAKLGVKNTAGIVIYAVKTNLV 213


>gi|297157797|gb|ADI07509.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 220

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 9/170 (5%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFD 136
           P  +V  + +   D       +   P      V  T  ++      +    + +      
Sbjct: 49  PDVVVMDIRMPGMDGIEATRLITTGPGTTRVVVLTTFDDDDYVYGALRAGASGFLVKDMA 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +  I   + ++     +I         L+  + A    +      +   +T RE E LT 
Sbjct: 109 LDDILAAVRVVASGDALIAPSVTRR--LIKEFAAR-PATTPPPRAELGGITDREREVLTL 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  G ++ EIA  L IS  T   Y+  ++ K   + R   +  A    +V
Sbjct: 166 VGSGLSNAEIADRLCISVATAKTYLTRLLAKLDARDRVQLVILAYEAGLV 215


>gi|288962660|ref|YP_003452954.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914926|dbj|BAI76410.1| two-component response regulator [Azospirillum sp. B510]
          Length = 229

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 14/171 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFD 136
           P  L+  + L +      + +   R       V   L +    +T      + Y     +
Sbjct: 62  PTVLITDLQLPDGHGTDLIREVRDRFPATEIMVISVLGDEDSVVTAIRAGASGYILKDSE 121

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLT 195
              +   +  L      I          +A Y     +       K   L T RE + L 
Sbjct: 122 PVDMVEAVRGLIEGRSPISAS-------IARYIIRRVQDGSFKDRKPAPLLTPRETDILW 174

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I++G T ++IA  LG+SR TV +YI +I RK    +RS A+  A+   ++
Sbjct: 175 GIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAIGRKLI 225


>gi|260428797|ref|ZP_05782774.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260419420|gb|EEX12673.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 206

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 1/159 (0%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
               L   D     ++    L   +     + +   +G   +  +           +   
Sbjct: 47  EAYNLVLLDYKMPGMRGLDSLREALAMKGGQRVALISGEATKDVAEQALALGAAGFVPKT 106

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEI 206
            P   ++   R   +G   A  A M  + +       E LT RE+E L  +SEGK++ EI
Sbjct: 107 LPAKSLVNAVRFMAMGEQYAPIAFMTAAEEEEKHPLAERLTKRELEVLRGLSEGKSNKEI 166

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L ++  T+  ++ ++ RK     R+ A   A    +
Sbjct: 167 ARDLDLTEPTIKLHMKTLYRKLEVNNRTQAAIVARDEGL 205


>gi|258625244|ref|ZP_05720156.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|262173344|ref|ZP_06041021.1| transcriptional regulator VpsT [Vibrio mimicus MB-451]
 gi|258582491|gb|EEW07328.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|261890702|gb|EEY36689.1| transcriptional regulator VpsT [Vibrio mimicus MB-451]
          Length = 224

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSD 204
           L+    +++L +      L   Y  +      V   + + +LT RE + +  +  G ++ 
Sbjct: 118 LIKGMSKVLLDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNI 177

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 178 EIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217


>gi|256832826|ref|YP_003161553.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256686357|gb|ACV09250.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 226

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 8/200 (4%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           LT+ +  S   +V      +Q +  +V +  P  ++  + ++      ++ Q       P
Sbjct: 25  LTQILTMSDMHVVAEAHDGDQVIG-MVHAHHPAVILMDLRMARMSGIESITQVTALTNPP 83

Query: 112 ------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
                  F T    +         + +       +   +  +      + R R   + + 
Sbjct: 84  GVIAMTSFDTESAILDAIDAGARGFVAKDSGPQELATAVRNVAAGEGALSR-RAARVVVE 142

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               A    +          LT RE E    ++EG ++ EIA  L +   TV  ++ S M
Sbjct: 143 RLRAAETRPAQQFAQSLLASLTDREREITALVAEGFSTAEIATRLYLGEATVKTHLKSAM 202

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            KT T  R+     A +  +
Sbjct: 203 NKTGTDNRTRLAVLAAKAGL 222


>gi|153004672|ref|YP_001378997.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028245|gb|ABS26013.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 218

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 9/185 (4%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLPENIT 121
           D    ++  + V    P  ++  +A+         L+     + +++     +   E + 
Sbjct: 34  DAADGKEAIAQVERLDPDVVLMDIAMPGLGGIEAALELHKLGKRSKVLILSQYEDREYVR 93

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                      L           +    +G ++L   +    +  A QA    + D +  
Sbjct: 94  RLLKAGVAGYVLKKSAGSELANAIRAVNRGGLVLDPEVARTAMQDAGQATPGGAADPYEA 153

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE + L  ++EG+++ E+A +LGIS  T  ++   +M K     R+  + +A+
Sbjct: 154 ----LTDREKQVLKLVAEGRSNKEVAEVLGISVKTAMSHREHVMEKLQVHNRTELVRFAL 209

Query: 242 RNNIV 246
           +  ++
Sbjct: 210 KKGVI 214


>gi|294101416|ref|YP_003553274.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293616396|gb|ADE56550.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 211

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   S+G +S E+A  L IS  TV  ++ASI  K   + ++ A+  A++  +
Sbjct: 144 LSAREREVLVLASKGLSSKEVAAELFISERTVQTHLASIYDKLGARNKTEALLLALKYGV 203

Query: 246 V 246
           V
Sbjct: 204 V 204


>gi|293189077|ref|ZP_06607804.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           odontolyticus F0309]
 gi|292821991|gb|EFF80923.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           odontolyticus F0309]
          Length = 216

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 9/156 (5%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +E       ++    L   V     + +         Y + +     +   +  +     
Sbjct: 68  AEVASTCRDIEGLHFLALSVSDAAEDVVQVIRAGARGYVTKSIATPDLVEAIGRVAAGDA 127

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVIL 210
                       LA +  + F + +V     +   L+ RE E +  I+ G T  E+A  L
Sbjct: 128 AFSP-------RLAGFVLDAFGTGEVSITDTELDLLSAREQEVMRLIARGYTYKEVAHDL 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  +++S++RK     R+    +A++ +IV
Sbjct: 181 FISIKTVETHVSSVLRKLQLSNRNELTRWAMQRHIV 216


>gi|297197553|ref|ZP_06914950.1| luxR family two-component system response regulator [Streptomyces
           sviceus ATCC 29083]
 gi|197715575|gb|EDY59609.1| luxR family two-component system response regulator [Streptomyces
           sviceus ATCC 29083]
          Length = 233

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             +       R   L   V  +  G  +L P     L   L          A    S   
Sbjct: 108 GASGYVLKQIRGSDLVSAVRTVASGQSMLDPATTARLMRSLRADPAETPAMAPELAS--- 164

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+ RE + L  I +G T+ EI   L +S  TV N+I+ ++ K   + R  A  
Sbjct: 165 -------LSPRERDILALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAV 217

Query: 239 YA 240
            A
Sbjct: 218 LA 219


>gi|146307690|ref|YP_001188155.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145575891|gb|ABP85423.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 213

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 155 LRDRLWE-IGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVIL 210
           LR  L E I L+AA + ++         +      L+ REVE L   + G ++ +IA+ L
Sbjct: 112 LRKELVETIRLVAAGKRHIPAEIAAELAEHIGQQCLSPREVEVLQAAALGYSNRDIALQL 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ +TV  ++  IM K     R+ A+A AV+  ++
Sbjct: 172 RITEDTVKGHMRLIMDKLGANNRTHAVAIAVQRGVL 207


>gi|116072236|ref|ZP_01469503.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116064758|gb|EAU70517.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 227

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGRE 190
            +     G++ +   G+    D L  I  +A   +   K      G     +   L+ RE
Sbjct: 113 AIEANVDGIIFVHSIGQSADGDFLKSIRAIANGSSYYPKEVRTMAGYVKSIELAGLSDRE 172

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            E L  + +G ++ E+A +L +S  T+ +++++++ K   K R+ A+  A+R  
Sbjct: 173 SEVLEALCQGMSNKEMAEVLFVSPETIKSHVSTVIGKLGVKDRTQAVISAIRAG 226


>gi|73748496|ref|YP_307735.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|147669277|ref|YP_001214095.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|289432544|ref|YP_003462417.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT]
 gi|73660212|emb|CAI82819.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
 gi|146270225|gb|ABQ17217.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
 gi|288946264|gb|ADC73961.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. GT]
          Length = 224

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L   + G ++ +IA  L +S  T+  ++++I +K +  +R+ AI Y ++  
Sbjct: 157 PLTEREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYGLKRG 216


>gi|220926584|ref|YP_002501886.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219951191|gb|ACL61583.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 270

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE   LT ++ G ++  IA  L ++  TV  ++ SI+RK     R+ A  +A +N 
Sbjct: 183 HLSERERLILTMLASGSSNKVIARRLDVTEATVKVHVKSILRKIRVSNRTQAAIWATKNG 242

Query: 245 IV 246
           IV
Sbjct: 243 IV 244


>gi|26988850|ref|NP_744275.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           KT2440]
 gi|24983655|gb|AAN67739.1|AE016405_2 DNA-binding response regulator, LuxR family [Pseudomonas putida
           KT2440]
          Length = 219

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 4/140 (2%)

Query: 108 LFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +     HT P+ I        + Y         +   L  +    R +          + 
Sbjct: 79  VLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALGAVRHGERYLSP---AIAHTVI 135

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                  K      G+   LT R++E L  I  GK++ EIA  LG+S  TV  + + IM+
Sbjct: 136 NQALRHTKQGKPSAGERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMK 195

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +      +G + +AVR  I+
Sbjct: 196 RLQIHDVAGLVLFAVREKII 215


>gi|312959040|ref|ZP_07773559.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311286810|gb|EFQ65372.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 909

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  I+EG ++ EI+  L IS +TV  + + I  K   + R+ A+A A    +
Sbjct: 848 LSVRELAVLQLIAEGCSNQEISNRLFISLHTVKTHASHINSKLGVERRTQAVARAQELRL 907

Query: 246 V 246
           +
Sbjct: 908 I 908


>gi|237665880|ref|ZP_04525868.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237658827|gb|EEP56379.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 227

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 69/174 (39%), Gaps = 6/174 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           +S D P  ++  + + + D       + +   ++   V  T  ++      +    + Y 
Sbjct: 43  ISKDKPNVILMDIRMPQMDGVQCTKVIKESYPDIKIIVLTTFDDDEYIFDALKYGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                +  +  G+  +   G ++  D   ++  L +  A       V+      L   E 
Sbjct: 103 LKGVSMKELIEGIHTVAGGGAMMNPDIATKVVRLFSRLAKGNLGIKVNSENVKSLGKTEW 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +  I  G ++ EIA +L +S  TV NY++ I+ K   + R+    +AV N +
Sbjct: 163 KVIVQIGRGLSNKEIAKVLFLSEGTVRNYLSQILNKLELRDRTQLAIWAVENGV 216


>gi|171741205|ref|ZP_02917012.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC
           27678]
 gi|283455432|ref|YP_003359996.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|306823500|ref|ZP_07456875.1| two component system response regulator [Bifidobacterium dentium
           ATCC 27679]
 gi|309802650|ref|ZP_07696754.1| transcriptional regulator, LuxR family [Bifidobacterium dentium
           JCVIHMP022]
 gi|171276819|gb|EDT44480.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC
           27678]
 gi|283102066|gb|ADB09172.1| Two-component response regulator [Bifidobacterium dentium Bd1]
 gi|304553207|gb|EFM41119.1| two component system response regulator [Bifidobacterium dentium
           ATCC 27679]
 gi|308220714|gb|EFO77022.1| transcriptional regulator, LuxR family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 230

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 6/159 (3%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R  + +      +V   P ++   +       +T     D+    L   + ++  G  + 
Sbjct: 78  RAYSPNTVFLALSVSDSPQDVGSVIRAGAQGYVTKTISGDD----LISSIKQVHEGYAVF 133

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            PK    +          +   A    +  +H  +   L+ RE E +  I+ G T  E+A
Sbjct: 134 SPKLAGFVLSAFQSAP--SGGMAAGGANGPIHDDELDRLSNREQEVMRLIARGYTYKEVA 191

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  TV  +++S++RK     R+    +A    IV
Sbjct: 192 AELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRIV 230


>gi|325964186|ref|YP_004242092.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470273|gb|ADX73958.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 229

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 9/152 (5%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
               +L     L   V     + +         Y + T   A I   +  +     +   
Sbjct: 85  GSAALLPTTRFLALSVSDAAEDVVAVIRAGARGYVTKTISGAEITDAVYRVAGGDAVFSP 144

Query: 157 DRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                   LA +  + F     D+   +  +L+ RE+E +  I+ G +  E+A  L IS 
Sbjct: 145 -------RLAGFVLDAFGTAPADIADDELDKLSARELEVMRLIARGYSYKEVAKELFISI 197

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  ++++++RK    +R     +A    ++
Sbjct: 198 KTVETHVSAVLRKLQLSSRHELTKWAAERRLL 229


>gi|284054156|ref|ZP_06384366.1| transcriptional regulator, LuxR family protein [Arthrospira
           platensis str. Paraca]
 gi|291570920|dbj|BAI93192.1| LuxR family transcriptional regulator [Arthrospira platensis
           NIES-39]
          Length = 105

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 41/69 (59%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D  +     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT+T  R  
Sbjct: 2   SDSKFKSPVSLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVE 61

Query: 236 AIAYAVRNN 244
            + ++++  
Sbjct: 62  LVRWSLQWG 70


>gi|213693023|ref|YP_002323609.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524484|gb|ACJ53231.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320459203|dbj|BAJ69824.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 231

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|8217387|emb|CAB92554.1| SmaR protein [Serratia sp. ATCC 39006]
          Length = 247

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 161 EIGLLAAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              L+  YQ  N    ++    K+  L+ RE E L W S GK+  EIA+ILGI   TV  
Sbjct: 154 HEKLITLYQEINDTHQFNKKNQKEI-LSKRENEILYWASMGKSYQEIALILGIKLTTVKY 212

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ + ++K        AI   V   ++
Sbjct: 213 HVGNAVKKLGVTNAKHAIRLGVELKLI 239


>gi|238799349|ref|ZP_04642788.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
 gi|238716799|gb|EEQ08676.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
          Length = 209

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 17/200 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCM-----ALSEKDKYYNVLQRPTELFCPVFHTL 116
           ++V       + +  ++  D  FD+V        A+ E  +Y   +         +    
Sbjct: 8   MIVDDHPLMRRGIRQLLELDSNFDVVTEANCGSDAIIEAARYQPDVILLDLNMKGMSGLD 67

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM---- 172
                   G+D R   LT   AR  +  M+       +L+D   EI L    QA +    
Sbjct: 68  TLKALRNEGIDARIIILTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRQAALGEKV 127

Query: 173 --------FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                     S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +I ++
Sbjct: 128 FSDEVALYLSSRHEQVNPFGELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNL 187

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           +RK   ++R  A    + N 
Sbjct: 188 LRKLNVRSRVAATIMFLENK 207


>gi|313499754|gb|ADR61120.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           BIRD-1]
          Length = 219

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 4/140 (2%)

Query: 108 LFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +     HT P+ I     G  + Y         +   L  +    R +          + 
Sbjct: 79  VLILSMHTDPDLIMRALEGGAHGYLLKDTSANELEQALGAVRHGERYLSP---AIAHTVI 135

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                  +       +   LT R++E L  I  GK++ EIA  LG+S  TV  + + IM+
Sbjct: 136 NQALRHTQQGKPSADERHNLTSRQLEILRLIVRGKSTREIAGGLGLSIKTVETHRSQIMK 195

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +      +G + +AVR  I+
Sbjct: 196 RLQIHDVAGLVLFAVREKII 215


>gi|311896469|dbj|BAJ28877.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 170

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 4/156 (2%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+          RP ++         + +            L        +  + L   
Sbjct: 13  GLAATRAILRGTDRPPKILVVTTFEADDYVYEALRAGADGFLLKRSRPAEVVQAVRLAAT 72

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  +L          A              G    LTGRE E L  ++ G ++ EI   L
Sbjct: 73  GETLLFPAAIRRLAAARAGHAADGGAVARAG----LTGREGEVLRLMARGLSNAEIGAQL 128

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 129 HLGVQTVKTHVSAVLGKLGARDRTQAVIAAYESGFV 164


>gi|312198483|ref|YP_004018544.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229819|gb|ADP82674.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 1022

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 181  GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            G    LT RE+E L  ++ G ++ +IA  L ISR T + ++++I+ K    TR  A A A
Sbjct: 949  GPPLGLTARELEVLRLVAAGGSNPQIASALFISRKTASTHVSNILGKLGVATRGEAAAVA 1008

Query: 241  VRNNI 245
             R ++
Sbjct: 1009 HRLHL 1013


>gi|306832609|ref|ZP_07465748.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304425217|gb|EFM28344.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 227

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 67/174 (38%), Gaps = 6/174 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           + +  P  ++  + + + D       V +        +  T  ++    + +    + Y 
Sbjct: 43  LPTSKPDVVLMDIRMPKMDGVLCTKAVKEHFPNTKVIILTTFDDDDFIYSALKYGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                +  +   ++ +     ++  D   ++  L +  A    +  V      +++  E 
Sbjct: 103 LKGTSMDELHDAVVTVNDGRAMLNPDIATKVFKLFSQMAQSNFAIQVDDALTTDISKMEW 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +  I  G ++ EIA  L +S  TV NY++SI+ K   + R+    +AV+  +
Sbjct: 163 RIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQTGV 216


>gi|294010385|ref|YP_003543845.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673715|dbj|BAI95233.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 265

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT REVECL W + GKT++EI +ILG+ R TV  +I S   K     R   +  A + 
Sbjct: 199 ISLTKREVECLRWAAAGKTNEEIGIILGLQRTTVRFHIRSASVKLDAVNRDQTMFKAAQL 258

Query: 244 NIV 246
             +
Sbjct: 259 GFL 261


>gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 242

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 71/187 (37%), Gaps = 27/187 (14%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP-----PAGMDNRYCSL 133
           P  ++  + +   + Y  +L++  E       PV     + +T           + Y S 
Sbjct: 59  PDLIISDVMMPRANGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISK 117

Query: 134 TFDVARIRIGLMLLFPKGRIILRD--------------RLWEIGLLAAYQANMFKSYDVH 179
            FD   +   +  +  +   +L++              ++ EI  +   Q        ++
Sbjct: 118 PFDPDELAARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNQANPENKIN 177

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                  T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + Y
Sbjct: 178 LP---SFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRY 234

Query: 240 AVRNNIV 246
           A+ N++V
Sbjct: 235 ALENHLV 241


>gi|312138597|ref|YP_004005933.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311887936|emb|CBH47248.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 217

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 118 ENITPPAG-MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           E++  P+G  +    +L  +  ++   L + F + ++   D     G+ A  +       
Sbjct: 91  EDVLRPSGFREGSSVALGLERGQVTSVLHVSFTRSQV---DSTVRAGIEALARQCRRIVA 147

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    + F L+GRE + L  +++G ++ EIA  L ISR TV  ++ +I  KT T++R   
Sbjct: 148 DQSERESFRLSGREHQILALVAQGASNAEIAAELLISRRTVATHLENIFAKTGTRSRVRV 207

Query: 237 IAYAVRNNIV 246
              A    I+
Sbjct: 208 AVRATELGIL 217


>gi|298247093|ref|ZP_06970898.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297549752|gb|EFH83618.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 202

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 44/93 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +++ R  +     +   N+   +         L  RE+E L  ++EG+++ EIA  L ++
Sbjct: 109 VVQSRFPDFAYHNSEPHNISSPHQPVQQSLVTLNKRELEVLRLLAEGRSNQEIADTLIVA 168

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++T+  Y+  I  K    +R+ AI  A +   +
Sbjct: 169 KSTIKWYLKQIYSKLNAHSRTQAIVCARQIGFL 201


>gi|226356417|ref|YP_002786157.1| DNA-binding response regulator [Deinococcus deserti VCD115]
 gi|226318407|gb|ACO46403.1| putative DNA-binding response regulator [Deinococcus deserti
           VCD115]
          Length = 194

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 165 LAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LA    ++    ++      +   LT RE E L  ++ G ++ EIA  LG+S +TV +++
Sbjct: 109 LARQVRDIVMHPEIDRLPHVDVPRLTPRESEVLPLLALGYSNKEIAKNLGVSPDTVKDHL 168

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           A +  K     R+ A++ A    ++
Sbjct: 169 ARLYSKLDAGDRTEAVSRARSIGLL 193


>gi|169825786|ref|YP_001695944.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990274|gb|ACA37814.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 199

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  LT RE + LT ++EGKT+ EIA  L +S  TV NYI++I+ K     R  AIA 
Sbjct: 135 ENPLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIAR 191


>gi|293414338|ref|ZP_06656987.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185]
 gi|291434396|gb|EFF07369.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185]
          Length = 216

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|302867924|ref|YP_003836561.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315505671|ref|YP_004084558.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570783|gb|ADL46985.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412290|gb|ADU10407.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 222

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ E+A  L +S  TV  ++A I+ K   + R  A+  A    +
Sbjct: 155 LTRRETEVLRLLAGGLSNAELAEALHLSEATVKTHVARILAKLRLRDRVQAVVVAYETGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|193064557|ref|ZP_03045637.1| transcriptional regulator CsgD [Escherichia coli E22]
 gi|192927809|gb|EDV82423.1| transcriptional regulator CsgD [Escherichia coli E22]
          Length = 216

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|183983931|ref|YP_001852222.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
 gi|183177257|gb|ACC42367.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
          Length = 218

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            GL+      + ++ D    +   LT RE E L ++++G ++ +IA  L +S  TV N++
Sbjct: 134 AGLVLGEYRRIAQTADSSQDRP-SLTERETEILRYVAKGLSAKQIAEKLSLSHRTVENHV 192

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
            +  RK     R     YA+ + +
Sbjct: 193 QATFRKLQVANRVELTRYAIEHGL 216


>gi|146302391|ref|YP_001196982.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146156809|gb|ABQ07663.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 219

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 10/176 (5%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPENITPPA----GMDNRY 130
           V  D    LV  +++ +KD    VL+   +   P   +  +  +++             Y
Sbjct: 45  VIQDQADILVLDISMPQKDG-IEVLKEFNQKGLPCKVIILSSYDDLKIIKEVMKLGAKGY 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +         I  +    +G+    D + E  + + +  N  K     + ++  L+ RE
Sbjct: 104 LTKK-CAGENMIEAIEAVYEGQEYFSDAVRE-KIFSMFSQNNPKLNKNVYIENPILSPRE 161

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E +T I    +  EI+  L IS NTV  +  +IM+K   K   G + YA++NN++
Sbjct: 162 IEIVTLICLEYSGKEISEKLFISVNTVETHRKNIMKKLNIKNTIGLVKYALKNNLI 217


>gi|16129003|ref|NP_415558.1| DNA-binding transcriptional activator for csgBA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107885|ref|AP_001665.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli str. K-12 substr. W3110]
 gi|170080692|ref|YP_001730012.1| DNA-binding transcriptional regulator of adhesion determinants
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238900295|ref|YP_002926091.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BW2952]
 gi|256023262|ref|ZP_05437127.1| DNA-binding transcriptional regulator CsgD [Escherichia sp.
           4_1_40B]
 gi|300950131|ref|ZP_07164076.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300954426|ref|ZP_07166878.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|301644945|ref|ZP_07244913.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|307137675|ref|ZP_07497031.1| DNA-binding transcriptional regulator CsgD [Escherichia coli H736]
 gi|331641579|ref|ZP_08342714.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H736]
 gi|1706166|sp|P52106|CSGD_ECOLI RecName: Full=CsgBAC operon transcriptional regulatory protein
 gi|1147562|emb|CAA62280.1| putative regulatory protein [Escherichia coli K-12]
 gi|1787277|gb|AAC74124.1| DNA-binding transcriptional activator for csgBA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062613|dbj|BAA35830.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli str. K12 substr. W3110]
 gi|169888527|gb|ACB02234.1| DNA-binding transcriptional regulator of adhesion determinants
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238860897|gb|ACR62895.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BW2952]
 gi|260449819|gb|ACX40241.1| transcriptional regulator, LuxR family [Escherichia coli DH1]
 gi|300318576|gb|EFJ68360.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|300450478|gb|EFK14098.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|301076735|gb|EFK91541.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|323942508|gb|EGB38675.1| luxR family protein regulatory protein [Escherichia coli E482]
 gi|331038377|gb|EGI10597.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H736]
          Length = 216

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|158315520|ref|YP_001508028.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158110925|gb|ABW13122.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 226

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 12/177 (6%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTE--------LFCPVFHTLPENITPPAGMDNRYC 131
              P  ++  + +   D         ++        L    F              + + 
Sbjct: 46  EHHPDVVLMDIRMPGTDGLAATAAICSDETLAATHVLILTTFEIDEYVTQALHVGASGFL 105

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGR 189
                   +   +  +     ++         L+A + A    +            LT R
Sbjct: 106 GKDVGTDELLTAIRTIAGGDALLSPAATR--ALIARFLATPEPTATARTNPAVLTTLTAR 163

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E +  ++EG ++ +IA  L IS  T   ++   M K   + R+  +  A ++ ++
Sbjct: 164 EREVMVLVAEGYSNHDIARRLVISPLTARTHVHRAMTKLEARDRAQLVVIAYQSGLL 220


>gi|269796274|ref|YP_003315729.1| two component transcriptional regulator, LuxR family [Sanguibacter
           keddieii DSM 10542]
 gi|269098459|gb|ACZ22895.1| two component transcriptional regulator, LuxR family [Sanguibacter
           keddieii DSM 10542]
          Length = 234

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P+  ++   R    G      +   +       +   LT REVE L  ++ G ++
Sbjct: 129 LLKDTPRAELVAGIREAARGQTVLTPSVATRLVSQVGSRADRLTPREVEVLRAVARGLSN 188

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +   L IS  TV  ++     K     R+ A+  A    ++
Sbjct: 189 AAVGHELFISETTVKTHLIRAFGKLGVNDRTHAVTVATDRGLL 231


>gi|238920760|ref|YP_002934275.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri
           93-146]
 gi|238870330|gb|ACR70041.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri
           93-146]
          Length = 239

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 19/184 (10%)

Query: 72  QKLDSIVSSDW----PFDLVRCMALSEKDKYYNV--LQRPTELFCP---VFHTLPENITP 122
           Q +D +V S      PF     + ++ +     +  L +  ++      V H     +  
Sbjct: 61  QHIDPVVISALRRVSPFLWDEKITVNSQLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAM 120

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            + M +       +  R  + ++L+    R I   R      + A +    K        
Sbjct: 121 LSLMVDDRGLAEIERNRGVLQMLLIDAHERFINGQR-----QITAQRHCSNKEP-----I 170

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE E L W S GKT  EIA+ILGI   TV  +I ++++K        AI   V 
Sbjct: 171 ENIFSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVE 230

Query: 243 NNIV 246
             ++
Sbjct: 231 LQLI 234


>gi|271966918|ref|YP_003341114.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510093|gb|ACZ88371.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 226

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 11/178 (6%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRP--------TELFCPVFHTLPENITPPAGMDN 128
           +  S+ P  ++  + + E D      +            L    F              +
Sbjct: 42  LARSERPDVVLMDVRMPEMDGIEATRRICGSADTAGVRVLMLTTFDLDEYVYAALRAGAS 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +         +   + ++     ++         L+A + A   +      G+   +TG
Sbjct: 102 GFLLKDTPPGELLAAIRVVAAGEGLLAPTVTRR--LIAEF-ARRPEPSQPLAGELGGVTG 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  I+ G ++ EIA  L +S  TV  ++  ++ K   + R+  +  A    +V
Sbjct: 159 RERDVLALIARGLSNTEIAGHLRLSLATVKTHVGRLLSKLGARDRAQLVILAYETGLV 216


>gi|226306620|ref|YP_002766580.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229493687|ref|ZP_04387472.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226185737|dbj|BAH33841.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229319648|gb|EEN85484.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 219

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    +V  +  +E+     +  R   +    F      +       + +     
Sbjct: 50  DVVLMDVRMPIVDGVKATEQILASGIESRVLVMTT--FDLDEHALGALRAGASGFLLKDT 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++         LL+ +  +           D  LT RE E L 
Sbjct: 108 PPEDLVSAIRSVAAGDAVVSPKVTRR--LLSRFIVDGPAPRRDPVVLDV-LTEREREVLG 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +S +T+ +++  I+ K   + R  A+  A    +V
Sbjct: 165 HVATGLSNIEIAQQLYLSESTIKSHVGRILTKLDLRDRVQAVVLAYETGLV 215


>gi|323492987|ref|ZP_08098124.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323312766|gb|EGA65893.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 212

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 33/66 (50%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   L+ RE   L  ++EGK+S E+A IL IS  TV  +  +I  K    + +    YA
Sbjct: 146 SKPNPLSRREEAILKLVAEGKSSKEVASILNISYRTVETHRQNIKHKLDLHSTAELAKYA 205

Query: 241 VRNNIV 246
           V   IV
Sbjct: 206 VEKGIV 211


>gi|303246118|ref|ZP_07332399.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302492514|gb|EFL52385.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 227

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 6/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
            +V +  P  +V  + L + D          + +P  +     HT  + +          
Sbjct: 44  ELVRTQSPDIVVLDIGLPDADGIEVIRQLRAMSQPPRILVVSMHTRLDLVAESLRQGALG 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L        +  +    +G   L   +    LL   +    +S  V    D  LT RE
Sbjct: 104 YVLKGSAPASLVHALDAVSRGDRYLDGAIVPQVLLKLDEYAERRSRPVDPAYDT-LTRRE 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  ++EG+    IA  L ISR TV N+ ++I  K +    +  + YAVR  I+
Sbjct: 163 QQILRLLAEGRGVATIAAELFISRKTVENHRSNIFGKLSFSNMAELVHYAVRMGII 218


>gi|282901307|ref|ZP_06309233.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193802|gb|EFA68773.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 210

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 77/199 (38%), Gaps = 22/199 (11%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------ 107
           +Y+G   + ++  +    +    ++  D P  ++  + + E D Y   +++  +      
Sbjct: 22  DYLGFRGYDVLTAENG--RTALGVLEQDIPDMIICDVMMPEMDGY-TFVEQVRQNERTSW 78

Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              LF        + +       + Y    F+   +   +         + +   W+   
Sbjct: 79  VPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQV------ESSLKQTSRWKEH- 131

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                        V +  D +LT  E++ + +++ G  + EIA  L +S+ TV ++++++
Sbjct: 132 -QTKVGEPGSRIQVPF--DVQLTPTELKVVQFVARGLANREIAEELNVSQRTVESHVSNM 188

Query: 225 MRKTATKTRSGAIAYAVRN 243
           + KT    R+    +A+ N
Sbjct: 189 LGKTNLHNRTELARWAIEN 207


>gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 242

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 83  PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITP------PAGMDNRYCSL 133
           P  ++  + +   D Y     + +       PV     + +T        AG+D+ Y   
Sbjct: 59  PDVIISDVMMPRCDGYGLLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDD-YMPK 117

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---AYQANMFKSYDVHWGKD--- 183
            FD   +   +  +  +   +L +       ++G +A       +M    D H  +    
Sbjct: 118 PFDPDELVARVKNVVQRQERLLTEAARFANADVGQMAKQITEIKSMLSHGDKHHSRKDDS 177

Query: 184 -FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
               T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ 
Sbjct: 178 IPNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALE 237

Query: 243 NNIV 246
           N++V
Sbjct: 238 NHLV 241


>gi|87118413|ref|ZP_01074312.1| putative two component system response regulator [Marinomonas sp.
           MED121]
 gi|86166047|gb|EAQ67313.1| putative two component system response regulator [Marinomonas sp.
           MED121]
          Length = 226

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 10/171 (5%)

Query: 83  PFDLVRCMALSEKDKYY-------NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           P  ++  + + E D          ++  +   +    F              + +     
Sbjct: 49  PDLILMDIRMPEMDGLSATSAILGDLNIQTRIVILSTFDLDEYIYRALREGASGFILKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + ++   G ++      +  L+ A+ A +  S+    G    LT RE E L 
Sbjct: 109 PPDELVAAVHVVAQGGALLTPSITKK--LIGAF-AELKPSHTNVTGHIDRLTTREKEILK 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G  + EIA  L I  +TV  +++S++ K   + R+ A+ +A  N ++
Sbjct: 166 NLALGFNNSEIASRLFIGESTVKTHVSSLLSKLELRDRAQAVIFAYENGVI 216


>gi|307332179|ref|ZP_07611263.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306882168|gb|EFN13270.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 225

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +A +        L     +    F      +       + +     
Sbjct: 50  DVVLMDIRMPGTDGLAATRMITEDPRLADVRVVMLTTFEVDEYVVDSLRAGASGFLGKGA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVE 192
           +   +   + +      ++    +   GL+A + A    S D       +   LT RE E
Sbjct: 110 EPDELLAAIRIAAAGEALLSP--VATKGLIARFLAQGDGSGDEGAYDAARLDALTVRERE 167

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +  G ++DEIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 168 VLVQVGGGLSNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYETGLV 221


>gi|239942450|ref|ZP_04694387.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988915|ref|ZP_04709579.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445905|ref|ZP_06585295.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348852|gb|EFE75756.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 221

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 11/180 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNR 129
            +V+   P  ++  + +   D      +      R   L    F              + 
Sbjct: 41  HLVARHHPDVVLMDIRMPGLDGIEATRRIIASGARTRILIVTTFDLDEYAYDGLRAGASG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---L 186
           +         +  G+  +     ++         LL AY  ++          D     L
Sbjct: 101 FLVKDALPEELLAGIRAVAAGDAVVAPTLTRR--LLDAYVHHLPVVPGARATSDPRITAL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E LT I +G ++ EIA  L ++ +TV  ++  I+ KT  + R  A+  A    +V
Sbjct: 159 TEREREILTVIGQGWSNTEIAARLHLAESTVKTHVTRILAKTGARDRVQAVILAYDTRLV 218


>gi|218700457|ref|YP_002408086.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI39]
 gi|218370443|emb|CAR18250.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli IAI39]
          Length = 216

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|94497651|ref|ZP_01304219.1| putative transcription regulator protein [Sphingomonas sp. SKA58]
 gi|94422868|gb|EAT07901.1| putative transcription regulator protein [Sphingomonas sp. SKA58]
          Length = 208

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 40/92 (43%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             D L  +        +   +   H      LT REVECL W + GKT++EI +ILG+ R
Sbjct: 113 AADALAVLARAFVQSYSKVTARARHDLASISLTKREVECLRWAAAGKTNEEIGIILGLQR 172

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  +I S   K     R   +  A +   +
Sbjct: 173 TTVRFHIRSASVKLDAVNRDQTMFKAAQLGFL 204


>gi|21225571|ref|NP_631350.1| LuxR family transcriptional regulator [Streptomyces coelicolor
           A3(2)]
 gi|8347028|emb|CAB93733.1| putative LuxR-family regulator [Streptomyces coelicolor A3(2)]
          Length = 988

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G ++  I   L IS  T + ++++I+ K    +R+ A+A A R  +
Sbjct: 920 LTAREQDVLRLLALGHSNRRIGEELFISAKTASVHVSNILAKLNAASRTEAVAVAHRQGL 979

Query: 246 V 246
           V
Sbjct: 980 V 980


>gi|107103010|ref|ZP_01366928.1| hypothetical protein PaerPA_01004079 [Pseudomonas aeruginosa PACS2]
 gi|152989609|ref|YP_001347033.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7]
 gi|150964767|gb|ABR86792.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7]
          Length = 224

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            + +       L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K     ++
Sbjct: 153 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 212


>gi|325069082|ref|ZP_08127755.1| two-component system regulator [Actinomyces oris K20]
          Length = 243

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 61/171 (35%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  + +     VL     L   +F      +         +     
Sbjct: 70  DVVLMDIQMPGLTGIEATRRICADPVLAATRVLILTMFEIDDYVLGALRAGACGFLLKDA 129

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++    L  +       A+   S     G+   LT R+ E L 
Sbjct: 130 DPQSLVDAVRTVHEGQSLLSPQVLARLVARMPRTASTGTSRSTWTGEVEALTPRQREVLL 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EI V LGI+R T  ++I +++ +   + R+  +  A    ++
Sbjct: 190 LIARGLSNSEIEVELGITRATCRSHITALLARLGARDRAQLVIAAYEAGLI 240


>gi|288553643|ref|YP_003425578.1| transcriptional regulator [Bacillus pseudofirmus OF4]
 gi|288544803|gb|ADC48686.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus pseudofirmus OF4]
          Length = 74

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 36/69 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +G    LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+
Sbjct: 4   AEFGPKPLLTKREREVFELLVQDKTTREIAQELFISEKTVRNHISNTMQKLGVKGRSQAV 63

Query: 238 AYAVRNNIV 246
              +R   +
Sbjct: 64  IELIRLGEI 72


>gi|237801455|ref|ZP_04589916.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024314|gb|EGI04371.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 77

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L W +EGKT+  IA+IL +   T++ +IAS ++K     ++ A   A  + 
Sbjct: 16  NLTQREIEVLKWSAEGKTAGAIAIILCLKERTIHFHIASAIQKMGVCNKTAAAVRAAMSG 75


>gi|226364631|ref|YP_002782413.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243120|dbj|BAH53468.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 222

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L  Y+       D       +LT RE E L ++++G ++ +IA  L +S  TV N++ +
Sbjct: 140 VLGEYRRMSSAPADEQGPAVPKLTERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQA 199

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
            +RK     R     YA+   +
Sbjct: 200 TLRKLQLANRVELTRYAIEQGL 221


>gi|158336971|ref|YP_001518146.1| LuxR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158307212|gb|ABW28829.1| transcriptional regulator, LuxR family [Acaryochloris marina
           MBIC11017]
          Length = 87

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L+ RE++ +  ++ G  ++EI+  L IS+ TV+N+I++I+ KT T  R   + +A++
Sbjct: 9   NHQLSERELQVIELVASGLKNEEISQRLDISKRTVDNHISNILTKTDTDNRVALVRWALQ 68

Query: 243 NN 244
             
Sbjct: 69  WG 70


>gi|118591588|ref|ZP_01548985.1| probable transcriptional regulator protein, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118435916|gb|EAV42560.1| probable transcriptional regulator protein, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 239

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            + L+   G  +  D +  +G      AA    + K +     +  +LT RE E L  IS
Sbjct: 126 AIRLMLNGGHYLPADAIKYMGFERPAGAAPALQLRKPHGRTKNQFSKLTKRETEVLCLIS 185

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           EG  +  IA  L +S +T+  +I  I+ K     R+ A A
Sbjct: 186 EGYQNKNIANKLSLSEHTIKLHIHHIISKLGVSNRTEAAA 225


>gi|291612623|ref|YP_003522780.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291582735|gb|ADE10393.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 215

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E LT+I++G +  EIA +L +S +T+  ++ SI  K    +R+ A   A+R 
Sbjct: 151 VPLTAREEEVLTYIAKGLSRTEIAQLLSVSAHTIIAHVRSIYSKLDISSRAEATVEAIRR 210

Query: 244 NIV 246
            ++
Sbjct: 211 GLI 213


>gi|239939391|ref|ZP_04691328.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 325

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 14/238 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R    +      D++ R      + S              S  + V  +    ++   
Sbjct: 88  PGRDRSHARASRGDDVIRRNSRPTTSSSSGRGFPPPC--WTRSPDIEVAGEAADGEEAVR 145

Query: 77  IVSSDWPFDLVRCMALSEKDKYY--------NVLQRPTELFCPVFHTLPENITPPAGMDN 128
           +V    P  ++  + +   D             L     +    F              +
Sbjct: 146 LVRELRPDIVLMDIRMPRLDGLAATRRITGDPELNDVKVVMLTTFELDEYVFEALRNGAS 205

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     +   +   +  +     ++         L+A + A   +           LT 
Sbjct: 206 GFLVKDTEPEELLRAVRAVVGGDALLSPGVTRR--LIAEFAARSKEP--TAAASLALLTE 261

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E +  +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 262 REREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 319


>gi|239932032|ref|ZP_04688985.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440400|ref|ZP_06579790.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343295|gb|EFE70251.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 7/171 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    L+  +  +E+       + P  +    F                +     
Sbjct: 54  DVVLMDVRMPLIDGIRATERILADPG-EAPRIVVVTTFENDSYVYDALRAGAAGFLLKRT 112

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   + L+     ++    +     LA   A    +      +   LTGRE E L 
Sbjct: 113 DADTLVGAVRLVARSDTLLFPAAVRT---LATEHARTSPAPPAWVAR---LTGRESEVLR 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G T+ EIA  + +   TV  ++AS++ KT  + R+ A+  A     +
Sbjct: 167 HVAAGLTNAEIARRMEVGPATVKTHVASVLAKTGARDRTQAVIAAYEAGFL 217


>gi|227546539|ref|ZP_03976588.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227212856|gb|EEI80735.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 231

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|21241668|ref|NP_641250.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107032|gb|AAM35786.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 235

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           LL A  A   K       K  +      L+ RE + L+ +  G T+  +A  LGIS  TV
Sbjct: 146 LLPAMVAEPAKPVATRRRKPLQDDRLGALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++  I++K   K R+ A  YAV++ +
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|15596957|ref|NP_250451.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9947738|gb|AAG05149.1|AE004601_14 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 907

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L   Q          + ++ +++ RE E L  ++ G ++ +IA  + +S  T+  ++
Sbjct: 820 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 879

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  K   K+R+ A+       ++
Sbjct: 880 HNLFAKLGVKSRTQAVLKGKSLGLL 904


>gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 236

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 23/188 (12%)

Query: 80  SDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHT-----LPENITPPAGMDNRYC 131
            + P  +V  + + E D       +   P     P         L + I   +   + Y 
Sbjct: 43  KNPPDLVVSDVLMPEMDGLEFCRRLRNIPNGRLMPFIFLSSKAELEDRINGHSMGADDYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRD--RLWE--IGLLAAYQANMFKSYDVHWG------ 181
           +       +   +  L  +   I  +  RL +    +   + AN   +            
Sbjct: 103 TKPVAPRELEAKIEALLERSHRIHAEIVRLMQQATAIAPGHLANQLSTSASAENSKTLAQ 162

Query: 182 -----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                K   LT  E      + +G T+ EI+  L IS  TV  +++SI+ K     RS  
Sbjct: 163 VGAKPKPLPLTPAEERVFWQVIQGLTNKEISDRLFISPRTVQTHLSSILHKLKLHNRSQL 222

Query: 237 IAYAVRNN 244
           + +A    
Sbjct: 223 VRFAYEQG 230


>gi|293393478|ref|ZP_06637789.1| transcriptional activator protein CarR [Serratia odorifera DSM
           4582]
 gi|291424079|gb|EFE97297.1| transcriptional activator protein CarR [Serratia odorifera DSM
           4582]
          Length = 245

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L++ Y+       +  +      + RE E L W S GKT  EIA+ILGI   TV  +I 
Sbjct: 157 KLISLYREMSQNKDEKIYNDKEIFSHRENEILYWASMGKTYQEIALILGIKTGTVKFHIG 216

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++++K        AI   +   ++
Sbjct: 217 NVVKKLGVLNAKHAIRLGIELQLI 240


>gi|58425447|gb|AAW74484.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 1005

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 11/195 (5%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A  F L RW     +   ++V        +    L+  + ++    R            P
Sbjct: 802 AMGFALARWHRLAGRSSAALVILGQ----IEQACLANDNAWHLARTRARIALVLQQRGEP 857

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG----LLAAYQANMF 173
               P       + +LT     I    +      R + +     +G     L        
Sbjct: 858 LAALPYLYSALEHVALTQSWQSIVELGLPAKAMLRSLRQHDPHTVGGSTRALTIQALLER 917

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S D     D   + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R
Sbjct: 918 LSDDDDPAGDI-FSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSR 976

Query: 234 SGAI--AYAVRNNIV 246
             A+  A AV+  ++
Sbjct: 977 ESALAQAQAVQRGLL 991


>gi|28901302|ref|NP_800957.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836071|ref|ZP_01988738.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ3810]
 gi|260362859|ref|ZP_05775728.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           K5030]
 gi|260880147|ref|ZP_05892502.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AN-5034]
 gi|260895264|ref|ZP_05903760.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           Peru-466]
 gi|260900616|ref|ZP_05909011.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ4037]
 gi|28809815|dbj|BAC62790.1| putative transcriptional regulator, LuxR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149750825|gb|EDM61570.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ3810]
 gi|308085647|gb|EFO35342.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           Peru-466]
 gi|308091763|gb|EFO41458.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AN-5034]
 gi|308107093|gb|EFO44633.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ4037]
 gi|308112345|gb|EFO49885.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           K5030]
          Length = 223

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSD 204
           L      +L+  +W     A       + +     K+    LT RE + +T++S G ++ 
Sbjct: 116 LQTGIDKVLQGDMWFSRKFAQQYITHLRRHSRPINKNVPAILTKREQQIITFLSMGASNQ 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +IA  L +S NTV  ++ +I +K   K R  A+ +A  N
Sbjct: 176 QIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214


>gi|322434206|ref|YP_004216418.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161933|gb|ADW67638.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 208

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+  L  I  G+ + +IA  L IS  TV  ++ +++ K     R+ A   A++  
Sbjct: 144 QLTARELSVLERIVAGRANKDIAADLFISEATVKTHVNNLLSKLGVADRTQAATIALQRG 203

Query: 245 IV 246
            V
Sbjct: 204 FV 205


>gi|312195736|ref|YP_004015797.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227072|gb|ADP79927.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 216

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 15/148 (10%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y + T     +   +  +     +           L
Sbjct: 75  RFLVLSVSDAAEDVIALIRAGARGYVTKTISADELADAVERVAGGDVVFSP-------RL 127

Query: 166 AAYQANMFKSYDVHWGKDF--------ELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           A +  + F+                  +LT RE E L  ++ G    EIA  L IS  TV
Sbjct: 128 AGFVLDAFRDASNAPPAAAAAPDADFDQLTPREREVLRLLARGYAYKEIAAELFISVKTV 187

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + ++++RK    +R     +A    I
Sbjct: 188 ETHASNVLRKLRLSSRHQLTRWAADRRI 215


>gi|258650856|ref|YP_003200012.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554081|gb|ACV77023.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 228

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A+   +      +   LT RE E L  I+ G ++ EI+  L +   T   ++  I  K  
Sbjct: 142 ASHTPADLPGPSELQALTAREREVLVLIAHGLSNAEISDHLVVGEGTTKTHVNRIFNKLG 201

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R+ A+A A ++ ++
Sbjct: 202 LRDRAQAVAMAYKSGLL 218


>gi|28975412|gb|AAO61802.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus]
 gi|328469240|gb|EGF40186.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 223

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSD 204
           L      +L+  +W     A       + +     K+    LT RE + +T++S G ++ 
Sbjct: 116 LQTGIDKVLQGDMWFSRKFAQQYITHLRRHSRPINKNVPAILTKREQQIITFLSMGASNQ 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +IA  L +S NTV  ++ +I +K   K R  A+ +A  N
Sbjct: 176 QIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214


>gi|107101191|ref|ZP_01365109.1| hypothetical protein PaerPA_01002223 [Pseudomonas aeruginosa PACS2]
 gi|218892288|ref|YP_002441155.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234855|ref|ZP_04928178.1| hypothetical protein PACG_00729 [Pseudomonas aeruginosa C3719]
 gi|313110449|ref|ZP_07796334.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|126166786|gb|EAZ52297.1| hypothetical protein PACG_00729 [Pseudomonas aeruginosa C3719]
 gi|218772514|emb|CAW28296.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310882836|gb|EFQ41430.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 907

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L   Q          + ++ +++ RE E L  ++ G ++ +IA  + +S  T+  ++
Sbjct: 820 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 879

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  K   K+R+ A+       ++
Sbjct: 880 HNLFAKLGVKSRTQAVLKGKSLGLL 904


>gi|323180293|gb|EFZ65845.1| transcriptional regulator, LuxR family protein [Escherichia coli
           1180]
          Length = 123

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR T+  +  +IM+K    +    I
Sbjct: 53  SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTIETHRLNIMKKLDVYSGIELI 112

Query: 238 AYAVRNNI 245
             A+R  +
Sbjct: 113 KTALRMGV 120


>gi|320106469|ref|YP_004182059.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924990|gb|ADV82065.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 210

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  +  GK++ EIA  L I   TV  +++ I+ +   + R+ A+   ++  
Sbjct: 147 NLSQREQEVLQLLFAGKSNREIAEELQIKETTVKTHVSVILMRLNVEDRTQAVVEGLKRG 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|300782719|ref|YP_003763010.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792233|gb|ADJ42608.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y + T     +   ++ +   G  +   RL   G +
Sbjct: 89  VFLALSVSDAAEDVIAVIRAGARGYVTKTISSKELVRAVVRVS-DGDAVFSPRL--AGFV 145

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               A+   S  ++  +   LT RE + L  ++ G    EIA  L IS  TV  +++S++
Sbjct: 146 LDAFADRPGSAPINDPELDLLTPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVL 205

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RKT    R     +A    +V
Sbjct: 206 RKTQLSNRYELSRWASDRRLV 226


>gi|229588468|ref|YP_002870587.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360334|emb|CAY47191.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 909

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    +
Sbjct: 848 LSARELAVLKLIAQGCSNQEISNQLFISLHTVKTHASHINSKLGVERRTQAVARAKAMGL 907

Query: 246 V 246
           +
Sbjct: 908 L 908


>gi|226364089|ref|YP_002781871.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242578|dbj|BAH52926.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 394

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 37/72 (51%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA  +++    D       ELT RE E    ++ GK++ EIA  L IS  TV +++  I+
Sbjct: 306 AASLSSVPLPSDCRAPGLEELTMREREVFQLLAAGKSNTEIADELVISVFTVKSHVKKIL 365

Query: 226 RKTATKTRSGAI 237
           RK     RS AI
Sbjct: 366 RKLGAMNRSEAI 377


>gi|297197789|ref|ZP_06915186.1| two component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197716622|gb|EDY60656.1| two component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D    L+  +A + +      L+    +    F              + +     
Sbjct: 49  DIVLMDIRMPLLDGLAATRRITEDTALKEVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+A + A   +      G    LT RE E + 
Sbjct: 109 EPEELLRAVRAVVDGDALLSPGVTRR--LIAEFAARSKEP--EAEGALAGLTEREREVMA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|148977874|ref|ZP_01814429.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145962943|gb|EDK28214.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 203

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+A +
Sbjct: 140 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 199

Query: 243 N 243
           N
Sbjct: 200 N 200


>gi|116049710|ref|YP_791485.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584931|gb|ABJ10946.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 907

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L   Q          + ++ +++ RE E L  ++ G ++ +IA  + +S  T+  ++
Sbjct: 820 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 879

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  K   K+R+ A+       ++
Sbjct: 880 HNLFAKLGVKSRTQAVLKGKSLGLL 904


>gi|284042733|ref|YP_003393073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946954|gb|ADB49698.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 226

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          D     L   +  +  G  L+ P+    L  R  E+   A     
Sbjct: 93  VFGALRAGAAGFLLKDAPPQVLIDAIRSVGAGHGLIAPEVTRRLIARFAEVSPAAERATE 152

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +            EL+ RE E L  I+ G+++ EIA  L +  +T+ ++++ ++ K    
Sbjct: 153 LE-----------ELSPREHEVLLQIARGRSNAEIAAALVVEESTIKSHVSRLLSKLGCS 201

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A+  A    +V
Sbjct: 202 SRVQAVILAYEVGLV 216


>gi|322418556|ref|YP_004197779.1| LuxR family two component transcriptional regulator [Geobacter sp.
           M18]
 gi|320124943|gb|ADW12503.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M18]
          Length = 224

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 2/161 (1%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L     +    K    L     L   ++  L             Y        R+ I  M
Sbjct: 60  LPDMSGIEATRKIIQALPSVKILMLSMYQNLEYATDAFKAGARGYIVKEATSDRL-IEAM 118

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +G   L  +L    ++        +      G    L+ RE + +  ++EG +S  
Sbjct: 119 DALSQGEHFLDGQLSGDMVIRHLCGQGKEGSVQDQGYAL-LSPREQQVMRLVAEGGSSRS 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  TV N+  ++M+K    +R   + YA R  ++
Sbjct: 178 IAEALQVSAKTVENHRTNLMKKLDVHSRIELVRYAARLGLI 218


>gi|225020543|ref|ZP_03709735.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679908|ref|ZP_07402718.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
 gi|224946673|gb|EEG27882.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660528|gb|EFM50025.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 232

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 51/159 (32%), Gaps = 30/159 (18%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L   V     + I+        Y + +     +   +  ++    +           
Sbjct: 75  PKFLALSVSDAAEDVISVIRSGARGYVTKSISGPELVDAIARVYDGDAVFSP-------R 127

Query: 165 LAAYQANMFKSYDVHWGKDF-----------------------ELTGREVECLTWISEGK 201
           LA +  + F   D   G                           LT RE+E L  ++ G 
Sbjct: 128 LAGFVLDAFARPDARAGVGVVDAPERDKAVEQGHPPIDDPIVDALTRRELEVLRLLARGY 187

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           T  EIA  L IS  TV  + ++I+RKT    R     +A
Sbjct: 188 TYKEIAGQLFISIKTVETHASNILRKTQQSNRHALTRWA 226


>gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. NATL2A]
 gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. NATL2A]
          Length = 242

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 23/185 (12%)

Query: 83  PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITP------PAGMDNRYCSL 133
           P  ++  + +   D Y     + +       PV     + +T        AG+D+ Y   
Sbjct: 59  PDVIISDVMMPRCDGYGLLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDD-YMPK 117

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKDF----- 184
            FD   +   +  +  +   +L +       ++G +A  Q    KS   H  K+      
Sbjct: 118 PFDPDELVARVKNVVQRQERLLTEAARFANADVGQMAK-QITEIKSMLSHGDKNHSRKDD 176

Query: 185 ---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
                T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+
Sbjct: 177 SIPNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 236

Query: 242 RNNIV 246
            N++V
Sbjct: 237 ENHLV 241


>gi|21224729|ref|NP_630508.1| two-component system regulatory protein [Streptomyces coelicolor
           A3(2)]
 gi|256784115|ref|ZP_05522546.1| two-component system regulatory protein [Streptomyces lividans
           TK24]
 gi|289767994|ref|ZP_06527372.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|21902164|gb|AAM78436.1|AF425994_2 putative two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3127843|emb|CAA18909.1| putative two-component system regulatory protein [Streptomyces
           coelicolor A3(2)]
 gi|289698193|gb|EFD65622.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +   D    ++  +  + +      L     +    +              + +     
Sbjct: 52  DVALVDVQMPVMSGIEATRRIAADPALAAVRVVILTNYGLDEYVFEALRAGASGFLLKDT 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   + ++     ++         L+  + A               LT RE E   
Sbjct: 112 EPADLLQAIDVVAHGEALLSPSVTR--TLIGEFVAR--PPDRSTAPGLDALTRREREVTA 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + G +++EIA  + IS  T   +I+  M K   + R+  + +A  + +V
Sbjct: 168 LAARGLSNEEIAAHMVISPLTAKTHISRAMTKLGARDRAQLVVFAYESGLV 218


>gi|77361820|ref|YP_341395.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76876731|emb|CAI87953.1| putative transcriptional regulator, LuxR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 218

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 8/162 (4%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  S KD +  + ++   L       L      P   +    S    V        +L  
Sbjct: 51  IETSSKDAWGKLKEQLVNLRIKCDIVLFNLDENPELANRALLSGIRGVFYTTDNADVLMK 110

Query: 150 KGRIILRDRLW--------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             R++L D+LW         +  +  +  +          +  +LT RE   ++ +S G 
Sbjct: 111 GIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSNGS 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + EIA  L IS +TV  ++ S  RKT  + R   +++A ++
Sbjct: 171 KNKEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQH 212


>gi|254240102|ref|ZP_04933424.1| hypothetical protein PA2G_00742 [Pseudomonas aeruginosa 2192]
 gi|126193480|gb|EAZ57543.1| hypothetical protein PA2G_00742 [Pseudomonas aeruginosa 2192]
          Length = 907

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L   Q          + ++ +++ RE E L  ++ G ++ +IA  + +S  T+  ++
Sbjct: 820 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 879

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  K   K+R+ A+       ++
Sbjct: 880 HNLFAKLGVKSRTQAVLKGKSLGLL 904


>gi|312196703|ref|YP_004016764.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228039|gb|ADP80894.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 225

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +          +L   V  +R G  LL P    +         L+ A    
Sbjct: 95  VYGALRAGASGFLLKGMEPTALVHAVHLVRDGGALLAPSATRL---------LIDAQAHA 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  +        +T RE E L  ++EG  + +IA  L IS  TV ++++S++ K    
Sbjct: 146 PARRQETSMALAGNVTEREREVLVLVAEGLANADIADRLSISPLTVKSHLSSLLAKHNLA 205

Query: 232 TRSGAIAYAVRNNIV 246
           TR   +  A  + +V
Sbjct: 206 TRVQLVVLAYESGLV 220


>gi|239981289|ref|ZP_04703813.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
 gi|291453147|ref|ZP_06592537.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
 gi|291356096|gb|EFE82998.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
          Length = 211

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++EG ++  I+  L +S+ TV +++  I  K    +R+ A+A A+   +
Sbjct: 149 LSRRETEVLGLVAEGMSNLRISERLHLSQATVKSHLVHIYAKLGVDSRTAAVAAALERGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|222081950|ref|YP_002541315.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726629|gb|ACM29718.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 260

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQAN----MFKSYDVHWGKDF 184
            +            + F   +   R+ L    + GLLA         +F S +   GK  
Sbjct: 132 PVHMPRGDYATVTGIRFGANKDFERNALRYIADFGLLAHVFHETAYALFDSSERSVGK-M 190

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE ECL   +EG ++ EI+ I+  S  TV  ++ S  +K   K R+ A+  A    
Sbjct: 191 RLTERERECLRHSAEGLSAKEISRIIDRSVPTVVMHLNSAAKKLGAKNRTQAVVRATHYR 250

Query: 245 IV 246
           ++
Sbjct: 251 LL 252


>gi|218513582|ref|ZP_03510422.1| LuxR family transcriptional regulator [Rhizobium etli 8C-3]
          Length = 65

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E + W++ GKT+ EI  IL +S  TVN +IA+   K      +  +A A+RN I+
Sbjct: 5   TPREREIIGWMAAGKTAAEIGAILAVSPITVNTHIANAKAKLGVFKETALVAEALRNGII 64


>gi|152061176|dbj|BAF73632.1| putative transcription factor PsyR [Pseudomonas syringae pv.
           tabaci]
          Length = 232

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 21/187 (11%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           + +  ++ S++P   ++    S       +++       P F     N       D+   
Sbjct: 44  RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLK 103

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   + +     R+ E        L  +   + K
Sbjct: 104 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIK 163

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H         +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   
Sbjct: 164 TRAPHELFPQPTQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 223

Query: 231 KTRSGAI 237
           +T   A+
Sbjct: 224 RTAKQAV 230


>gi|90994534|ref|YP_537024.1| hypothetical chloroplast protein 29 [Porphyra yezoensis]
 gi|122244619|sp|Q1XDE4|YCF29_PORYE RecName: Full=Probable transcriptional regulator ycf29
 gi|90819098|dbj|BAE92467.1| unnamed protein product [Porphyra yezoensis]
          Length = 222

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            ++ SD    LV    L  K K    L +   +F        + I         Y S  F
Sbjct: 48  DLIISDIMMPLVNGYELLAKLKKNKALSKIPVIFLTAKGMTKDRIKGYDMGCYGYLSKPF 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D         LL     +I RD L E  L          + +        LT RE   L 
Sbjct: 108 DPNE------LLSIINNLIARDVLKEASL------QNSATSNQQLNHKIRLTPREKSILD 155

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + +G T+ EI+ IL  S   V  Y++ ++ KT  K R+  + Y
Sbjct: 156 LVVDGLTNKEISTILNTSVRNVEKYVSRLLHKTNMKNRTLLVKY 199


>gi|323154780|gb|EFZ40977.1| bacterial regulatory s, luxR family protein [Escherichia coli
           EPECa14]
          Length = 123

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT  E E L  I++GKT+ EIA  L +SR TV  +  +IM+K    + 
Sbjct: 49  EKISSRYSSDNQLTNSESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 108

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 109 IELIKTALRMGV 120


>gi|288920973|ref|ZP_06415266.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288347607|gb|EFC81891.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 226

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +   G D     L   V  +  G  LL P     L  +   I    A  A 
Sbjct: 93  VARALRVGASGFLGKDVEADGLLAAVRTVAAGEALLSPAATRALIAQFVAIPEPTATAAA 152

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + D        LT RE E +   +EG ++ EIA  L IS  T   ++   M K   +
Sbjct: 153 SHAALDT-------LTAREREVMILAAEGHSNQEIAAKLVISPLTARTHVHRAMAKLDAR 205

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A +  ++
Sbjct: 206 DRAQLVVIAYQTGLL 220


>gi|261364979|ref|ZP_05977862.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
 gi|288566780|gb|EFC88340.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
          Length = 218

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
            LL    + +  D ++   +      ++         +    LT RE+E L +++ G ++
Sbjct: 111 FLLDSIRKAVDGDNVFSPEMTTRLVQSLISPSAPRTDQALSTLTPRELEILGYLAAGHSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L ++ +TV  ++ +++RK    +R  A  YAV++ +
Sbjct: 171 KVIARHLELAESTVKVHVQNLLRKLDLSSRVQAAVYAVQHKV 212


>gi|85376480|gb|ABC70477.1| acylhomoserine lactone-dependent transcriptional regulator
           [Pseudomonas sp. M18]
          Length = 215

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            + +       L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K     ++
Sbjct: 144 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 203


>gi|148548821|ref|YP_001268923.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148512879|gb|ABQ79739.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
          Length = 219

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 4/140 (2%)

Query: 108 LFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +     HT P+ I        + Y         +   L  +    R +          + 
Sbjct: 79  VLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALGAVRHGERYLSP---AIAHTVI 135

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                  K      G+   LT R++E L  I  GK++ EIA  LG+S  TV  + + IM+
Sbjct: 136 NQALRHTKQGKQSAGERHNLTSRQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMK 195

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +      +G + +AVR  I+
Sbjct: 196 RLQIHDVAGLVLFAVREKII 215


>gi|152988849|ref|YP_001348901.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964007|gb|ABR86032.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 907

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L   Q          + ++ +++ RE E L  ++ G ++ +IA  + +S  T+  ++
Sbjct: 820 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 879

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  K   K+R+ A+       ++
Sbjct: 880 HNLFAKLGVKSRTQAVLKGKSLGLL 904


>gi|324997109|ref|ZP_08118221.1| two component transcriptional regulator, LuxR family protein
           [Pseudonocardia sp. P1]
          Length = 126

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE+E L  ++ G T+ EIA  L I+  TV  ++A I  K     R+ A    +R ++
Sbjct: 55  LTGRELEVLQVLAAGATNKEIAARLFIAPKTVGAHLARIFAKLGVTNRTQAAGV-LRRHL 113


>gi|258592851|emb|CBE69160.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 160

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V       LT RE + L  I++G +  +IA  L  S  T+ N+ A I +K   + R+G +
Sbjct: 90  VDGAPGDRLTPREQQILRLIAQGFSDKQIARTLQRSVRTIENHAARIRQKLHIENRTGLV 149

Query: 238 AYAVRNNIV 246
            +A RN ++
Sbjct: 150 RFAFRNRLI 158


>gi|254430257|ref|ZP_05043960.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
 gi|197624710|gb|EDY37269.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
          Length = 291

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++ G ++ EIA  L +S +TV  ++ +++RK   + R+ A    V   
Sbjct: 225 PLTPRELEVLAQVARGCSNVEIAGSLYLSVDTVKTHLQNVLRKLPARDRAHAAVLGVCWG 284

Query: 245 IV 246
           ++
Sbjct: 285 LI 286


>gi|330975157|gb|EGH75223.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 95

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 40/68 (58%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              ++F +T RE E   W + GKT +EIAVIL IS+ TV+ +I++++ K   +T+  A  
Sbjct: 28  ESDENFTITDREKEVYIWTAIGKTCNEIAVILNISKRTVDFHISNVISKLGVRTKLQACI 87

Query: 239 YAVRNNIV 246
              +  I+
Sbjct: 88  QLTKMGIL 95


>gi|326798146|ref|YP_004315965.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326548910|gb|ADZ77295.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 211

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            Q ++F++         +LT RE E L  I+EGKT+ EI   L IS +TV  +  ++M+K
Sbjct: 133 VQQSLFEAALHDPMNLPKLTRREQEVLRCIAEGKTTVEIGETLFISPHTVETHRRNLMQK 192

Query: 228 TATKTRSGAIAYAVRNNIV 246
                 +  I  A +  ++
Sbjct: 193 FEVSNAAALIRVATQYQLI 211


>gi|229174002|ref|ZP_04301538.1| Response regulator [Bacillus cereus MM3]
 gi|228609334|gb|EEK66620.1| Response regulator [Bacillus cereus MM3]
          Length = 566

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 96/253 (37%), Gaps = 11/253 (4%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E  Q  + L+   EQ T  V ++P ++ L   +I L       +   +L   +      
Sbjct: 316 LEQVQGTLSLHSNVEQGTFIVCNIPLQTKLAHDIIRLLVVDDQALITNSLERILEHQTDF 375

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119
           +V    +   +   +     P  ++  + + E +    +L+   R   +   +  T  ++
Sbjct: 376 IVVGKAYDGSEALKLCEQLQPDIVLMDIQMPEMNGIEALLEMKRRWPNIKIVLMTTFEDS 435

Query: 120 ITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMF 173
           +     ++     Y   +     ++  L L++  G  I +    R++E   L   Q    
Sbjct: 436 LQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIFEEMKLQREQLAKI 495

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS        + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R
Sbjct: 496 KS--TKQTSPYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNR 553

Query: 234 SGAIAYAVRNNIV 246
             AI  A   NI+
Sbjct: 554 EEAIKKARTENIL 566


>gi|157283845|ref|YP_001468113.1| two component LuxR family transcriptional regulator [Kineococcus
           radiotolerans SRS30216]
 gi|151362987|gb|ABS05989.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 241

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+GRE E L  I+EG  + +IA  LGIS +TV  ++  I+R+     R+ A  +A  +
Sbjct: 177 LSGREHEVLQLIAEGLANKQIARSLGISEHTVKVHVGRILRQLGVSGRTAAAVWAREH 234


>gi|328885230|emb|CCA58469.1| hypothetical protein SVEN_5183 [Streptomyces venezuelae ATCC 10712]
          Length = 1016

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 5/154 (3%)

Query: 93   SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            +E    Y  ++RP +L     H L + +    G      +L  +     + L     +  
Sbjct: 864  AEVVAAYEPVERPYQLARAR-HRLADALLVEGGRREEATALLREAHATAVRLGARPLRED 922

Query: 153  IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            + L      + L A       +  D  +G    LT RE   L  ++ G+T+ +IA  L I
Sbjct: 923  VELLAARARLSLAAEKPPAAAEPGDDTFG----LTPREQAVLGLVAAGRTNRQIAEELFI 978

Query: 213  SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  T + ++++I+ K     R  A A A R +++
Sbjct: 979  SPKTASVHVSNILAKLGVSGRGEAAALAHRLHLL 1012


>gi|326334296|ref|ZP_08200514.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325947905|gb|EGD40027.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 211

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +++ REVE L  +++G  + E+A  L +S  TV ++++ I  K    TR+GA+A A+   
Sbjct: 148 KVSPREVEILRLLAKGLGNKEMARELLVSEATVKSHLSHIYTKLGVDTRAGAVATAIERR 207

Query: 245 IV 246
           I+
Sbjct: 208 IL 209


>gi|27362891|gb|AAN86997.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum]
          Length = 204

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L+ R+ E L  I+ G ++ +I+  L IS  TV +++ SI R+   + R+ A  
Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|324997306|ref|ZP_08118418.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 226

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I+        Y + T     +   +  +     +    RL    +L
Sbjct: 89  VFLALSVSDAAEDVISVIRSGARGYVTKTISGRDLADAVRRVRVGDAVFSP-RLAGF-VL 146

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+      +  V    D +LT RE + L  ++ G    EIA  L IS  TV  +++S++
Sbjct: 147 DAFSDRPGAAPPVDPEVD-QLTKRERDVLRLLARGYAYKEIAGELFISVKTVETHVSSVL 205

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RKT T  R     +A    +V
Sbjct: 206 RKTQTSNRHELSRWASDRRLV 226


>gi|317503562|ref|ZP_07961584.1| transcriptional regulator [Prevotella salivae DSM 15606]
 gi|315665304|gb|EFV04949.1| transcriptional regulator [Prevotella salivae DSM 15606]
          Length = 212

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 16/162 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    M LSE+      +    +L     H L  +    +           ++  IR+GL
Sbjct: 60  DSAELMILSERYTKVRWVLFCEDLSVDFVHVLVSSSPRFS-----ILLKECNLQEIRVGL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                  R I + R+ E+ LLA  Q  +         +  +LT  E E L  I+ G T+ 
Sbjct: 115 DYAIHDRRFICQ-RMAEM-LLAPAQPQL---------EHVKLTPTETEILKDIALGMTTR 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA     S +TVN +  +I RK    T   A  YA+R  ++
Sbjct: 164 EIAEKRFSSFHTVNTHRKNIFRKLGVNTIHEATKYALRAGLI 205


>gi|309791797|ref|ZP_07686284.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308226119|gb|EFO79860.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 209

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + EG  + EIA  L +S +TV  +I++I+ K     R  A+  A++  +
Sbjct: 149 LTERERDVLKLLVEGLNNAEIAERLVVSLSTVKYHISNILMKLGVDNRVAAVTKAIQKKM 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|307325986|ref|ZP_07605185.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888478|gb|EFN19465.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 230

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 73/224 (32%), Gaps = 11/224 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
             D + R+   D  +       AL       E VG +        L +EQ  D +V  D 
Sbjct: 6   GDDAVIRVALADDQILVRAGFRALLAAQPDIEVVGEAADGEQALALVREQHPD-VVLMDI 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              ++  +A + +      L     +    F              + +     +   +  
Sbjct: 65  RMPVLDGLAATRRITGDPALGEVKVVMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLR 124

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     ++         L+A + A   +        +   T RE E +  +  G +
Sbjct: 125 AVRAVVGGDALLSPGVTRR--LIAEFAARSREPAPAAALAEL--TEREREVMALVGMGLS 180

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 181 NQEIARRLVVSPLTAKTHVSRTMVKLGVRDRAQLVVLAYESGLV 224


>gi|300783580|ref|YP_003763871.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299793094|gb|ADJ43469.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 427

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 2/178 (1%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           LVR        +D +  +  P D+        +      L +P          +   +  
Sbjct: 239 LVRHTEVDVDLVDPVGDASLPQDIAHTARTLTRGLVLAALDQPATTRLRASWRVDGPVLR 298

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
               D+  C    D    R     L   G     D +   G        +  +       
Sbjct: 299 ITVRDD--CPEVADAVPPRGLTERLTTLGGHWEVDAVPSWGTTVTAVLPLGVAEPPELRA 356

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              L  RE+E L+ IS+G  + +IA  L +S +TV  ++ +I+ K    +R  A A A
Sbjct: 357 LDRLNPRELEVLSGISQGLRNRQIAEQLQLSEHTVKFHVRNILDKLDVSSRGEAAALA 414


>gi|171909746|ref|ZP_02925216.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 215

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         I  G++     G  +      ++        +   +      +   L  
Sbjct: 101 GYLLKRTPPREIVAGIVQAHAGGSPMSPQVARQVVSFFHRVTDTATTAPPDP-EMSALAE 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE E L  +S+G    EIA  LGIS +TVN++I  I  K   ++R+ A+A 
Sbjct: 160 REREVLDLLSKGFLYKEIADQLGISTHTVNSHIRRIYEKLHVRSRAQAVAK 210


>gi|89900655|ref|YP_523126.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345392|gb|ABD69595.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 231

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 11/148 (7%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   V     +      G    Y   T +   +   ++       ++  + + +  L+AA
Sbjct: 86  LMLTVSEDENDLAAALRGGAAGYLLKTIEGDALTAAIVRAMQGDSVVAPEMMNK--LVAA 143

Query: 168 YQANMFKSYDVHWGKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           Y+    +   +   +            L+ RE + L  I+ G ++ EI    GI+  TV 
Sbjct: 144 YRGTSKEVPGIGTAQPPAVSAGPAMASLSPRERDILRGIARGASNKEIGREHGIAETTVK 203

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  I+RK    +R  A   A    ++
Sbjct: 204 IHVQHILRKLDVSSRVHAAVIATEQGLL 231


>gi|315645472|ref|ZP_07898596.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315278950|gb|EFU42260.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 200

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            + + G++  LT RE E L+ I++GK + EIA  L I+  TV NYI+ I+ K     R  
Sbjct: 129 DEAYSGEENPLTEREKEVLSLIADGKNTKEIATQLFITTGTVRNYISVILDKLGVSNRIE 188

Query: 236 AI 237
           AI
Sbjct: 189 AI 190


>gi|312961526|ref|ZP_07776027.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284205|gb|EFQ62785.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 215

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 75/217 (34%), Gaps = 22/217 (10%)

Query: 35  RMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVS-SDWPFDLV 87
           R++ +D        M  + E       VG +       D     + D I+  ++ P    
Sbjct: 8   RILLVDDHPMMRRGMRQILELEDDLQVVGEAGNGQEALDQIDAVQPDLILLDNNMPH--- 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-NRYCSLTFDVARIRIGLML 146
             M   E  +    +    ++         ++I     +D N Y     +   +   +  
Sbjct: 65  --MNGLETLRRLRAMHYGGKVLLFTVSDAEDDIRDALRLDANGYLLKDMEPELVVEFIRD 122

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +I          L    A   +S   H     ELT RE + L  I+ G ++  I
Sbjct: 123 ALRGALVISPG-------LTRVLAQALRSPQPHAA--VELTERERQVLKTIAGGYSNKVI 173

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              LGI+  TV  ++ +++ K   ++R  A  +A+ +
Sbjct: 174 GHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210


>gi|159898519|ref|YP_001544766.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus
            ATCC 23779]
 gi|159891558|gb|ABX04638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Herpetosiphon aurantiacus ATCC 23779]
          Length = 1019

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 185  ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L+ RE+  +  ++ G ++ EIA  L ++ NT+  ++ +I  K A  +R+ AIA A R N
Sbjct: 955  PLSERELTVIRLLAAGFSNQEIAQQLVVTLNTIKTHLKNIYSKLAVTSRTQAIARARRLN 1014

Query: 245  IV 246
            ++
Sbjct: 1015 LI 1016


>gi|110637722|ref|YP_677929.1| response regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110280403|gb|ABG58589.1| response regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 220

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 164 LLAAYQANMFKSYDVHWG---KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           L++ Y + + ++  +  G    ++ELT RE   L  I++GK + EIA  LGIS  T+  +
Sbjct: 135 LVSGYLSKVKQTDSIQSGYSNDEYELTKREKGILKMITDGKNNREIADGLGISIRTIETH 194

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
            A+IM+K   K     +  A+   IV
Sbjct: 195 RANIMKKLKVKNAVELVRIAIDEKIV 220


>gi|295704765|ref|YP_003597840.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802424|gb|ADF39490.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 212

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 5/150 (3%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           M   E  K  +   +   L    F      I         Y     +  RIR  +  +F 
Sbjct: 61  MDGVEATKLISDSTKAKPLILTTFDDDEYIIDAVKNGAKGYLLKNTEPERIRDAIKSVFN 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              ++    L +I              D+      + T RE   +T I++G ++ EI+  
Sbjct: 121 GHTVLQDVVLDKIKSSLNAAVERESKADM-----TQFTERETSIMTLIAKGLSNKEISKT 175

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L IS  TV NYI+SI+ KT  + R+    Y
Sbjct: 176 LFISEGTVANYISSILSKTGLEHRTQIAIY 205


>gi|302551299|ref|ZP_07303641.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468917|gb|EFL32010.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRN 215
           D L   G  A       +S         E L+ RE E LT +  G  + EIA  LG+S  
Sbjct: 125 DSLLSPGPTARLIQRFLRSPSAPETGGPECLSDREREVLTLVGRGLNNTEIAESLGLSPL 184

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T   +++ IM K A + R+  +  A  + +V
Sbjct: 185 TAKTHVSRIMGKLAARDRAQLVIVAYESGLV 215


>gi|209964176|ref|YP_002297091.1| transcriptional regulator, LuxR family protein [Rhodospirillum
           centenum SW]
 gi|209957642|gb|ACI98278.1| transcriptional regulator, LuxR family protein [Rhodospirillum
           centenum SW]
          Length = 216

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLL 147
            L   D+   + +   E    V     +            +   S    +  +R  L L+
Sbjct: 61  PLPVADQIARLRKAAPEAGLVVLTGALDGDILCACQESAADACLSKAMPLEAVRRTLHLV 120

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R++    L           +   + +   G D  LT RE E L+ +  G ++ +IA
Sbjct: 121 MLGQRVLPAAALS-----TTATESPGPADEPGRGPDL-LTVREREILSCLLGGGSNKDIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L ++ +TV  +  +++RK   + R+ A  +A+ N I
Sbjct: 175 SRLNVAESTVKMHFKALLRKLRVQNRTQAAMWALSNGI 212


>gi|205374386|ref|ZP_03227184.1| spore germination protein E [Bacillus coahuilensis m4-4]
          Length = 74

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTRREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|29829271|ref|NP_823905.1| LuxR family transcriptional regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606378|dbj|BAC70440.1| putative LuxR-family transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 1004

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                 R          +R    LL     +   + L   G LA                
Sbjct: 884 ALLAAGRREEAAEQARAVRETATLLGAAPLLDAVETLVRRGRLA--------ETSPAADG 935

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L  ++ G+T+ +I   L I+  T + ++++I+ K +  +R+ A+  A R
Sbjct: 936 TAVLTARENDVLRLLARGRTNRQIGEELFITGKTASVHVSNILAKLSAASRTEAVVIAYR 995

Query: 243 NNIV 246
             ++
Sbjct: 996 EGLL 999


>gi|312131668|ref|YP_003999008.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311908214|gb|ADQ18655.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 214

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +DF LT +E + L ++  GK+   IA +L IS  TV  ++ +I  K    + + A+A A+
Sbjct: 148 EDFNLTEQERKVLHYLVAGKSYKMIADVLFISLETVKTHLRNIYLKLQVHSGTEAVAKAL 207

Query: 242 RNNI 245
           ++ I
Sbjct: 208 KHKI 211


>gi|302560744|ref|ZP_07313086.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302478362|gb|EFL41455.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRN 215
           D L   G  A       ++         E L+ RE E L  ++ G  + EIA  LG+S  
Sbjct: 125 DALLSPGPTARLIERFLRTPPAPVTAGPECLSDREREVLALVARGLNNTEIADSLGLSPL 184

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T   +++ IM +   + R+  +  A  + +V
Sbjct: 185 TAKTHVSRIMGRLGARDRAQLVIVAYESGLV 215


>gi|256396266|ref|YP_003117830.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362492|gb|ACU75989.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +   G       L   +  +  G  LL P     L  R      L    A 
Sbjct: 93  VFEALRAGASGFLGKSAEADELLAAIRTVERGDALLSPAATKALISR-----FLTTPVAP 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +      G    LT RE +   +++EG ++DEIA  L +S  TV  ++   M K   +
Sbjct: 148 R-QLDQAQRGALDALTDRERQITGFVAEGLSNDEIAARLVLSPATVKTHVNRAMVKVGAR 206

Query: 232 TRSGAIAYAVRNNI 245
            R+  + +A R+ +
Sbjct: 207 DRAQLVVFAHRSGL 220


>gi|255533126|ref|YP_003093498.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255346110|gb|ACU05436.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 263

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +D  L+ RE E L W++EG +S  IA  L IS +TV N+  S+  KT T      +++ 
Sbjct: 198 EEDKLLSKREKEVLLWMAEGLSSKLIADKLFISEHTVINHRRSMQDKTNTPNAVALVSFC 257

Query: 241 VRNNIV 246
           ++N ++
Sbjct: 258 IKNGLI 263


>gi|300788334|ref|YP_003768625.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797848|gb|ADJ48223.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 225

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 18/176 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + +   D      +      R   L    F              + +      
Sbjct: 48  PDVVLMDIRMPGMDGIEATRRILATGGRSRVLVMTTFDLDEYAYAALRAGASGFLLKDAH 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-------KSYDVHWGKDFELTGR 189
              +  G+  +     +I         LL  Y   +           D  W     LT R
Sbjct: 108 PEELLAGIRAVAGGDAVIAPALTRR--LLDTYGHRLPDGGATPTPPADPRWE---SLTAR 162

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + L  I +G T+ EIA  L +S +TV  ++  ++ K   + R  A+  A    +
Sbjct: 163 EQDILVAIGQGWTNGEIAERLVLSESTVKTHVGRVLAKIGARDRIQAVILAYDLGL 218


>gi|170077282|ref|YP_001733920.1| two component sensor histidine kinase [Synechococcus sp. PCC 7002]
 gi|169884951|gb|ACA98664.1| two component sensor histidine kinase [Synechococcus sp. PCC 7002]
          Length = 363

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  +++G    +IA  L IS +TV  ++   + K   K R  AI  A +  +
Sbjct: 303 LSQRERQVLALLTKGLRDRDIAQQLHISESTVKFHLNRTLSKLQAKNRYQAIYQATKQGL 362

Query: 246 V 246
           +
Sbjct: 363 I 363


>gi|284029283|ref|YP_003379214.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808576|gb|ADB30415.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 215

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (47%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + +    + A    +  ++      +   LT RE + +  ++ G+T+ EI   L +S +T
Sbjct: 125 ESMVSPSVTARLLEHFTQAAAPRTARPHPLTEREADVVRAVARGRTNGEITEELVVSLST 184

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V +++AS  RK   + R+    +A  N +V
Sbjct: 185 VKSHLASAQRKLGLRNRTELAVWAWENRLV 214


>gi|239628083|ref|ZP_04671114.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518229|gb|EEQ58095.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 268

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 30/63 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K  D    K + LT RE E +  I  G ++ +I   L IS NTV  +I ++ RK     R
Sbjct: 184 KETDKSRMKRYGLTEREEEIMELIISGISNQQIGEKLFISENTVKKHINNLYRKLDVVNR 243

Query: 234 SGA 236
           S  
Sbjct: 244 SQL 246


>gi|238764730|ref|ZP_04625673.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
 gi|238697021|gb|EEP89795.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
          Length = 219

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------LAAYQANM 172
           G+D R   LT   AR  +  M+       +L+D   EI L             +   A  
Sbjct: 86  GIDARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEILLENIRLAAKGEPVFSDEVAQY 145

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 146 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 205

Query: 233 RSGAIAYAVRNN 244
           R  A    + N 
Sbjct: 206 RVAATILFLENK 217


>gi|170688263|ref|ZP_02879473.1| germination protein GerE [Bacillus anthracis str. A0465]
 gi|254687022|ref|ZP_05150880.1| germination protein GerE [Bacillus anthracis str. CNEVA-9066]
 gi|170667769|gb|EDT18522.1| germination protein GerE [Bacillus anthracis str. A0465]
          Length = 74

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|153948784|ref|YP_001400250.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960279|gb|ABS47740.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 31758]
          Length = 209

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 18/204 (8%)

Query: 59  SHFLLVRWDL-FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTL 116
           SH +L+  D     + +  ++  D  FD+V                +P   L       +
Sbjct: 4   SHTILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSDAITEAGKFQPDVILLDLNMKGM 63

Query: 117 PENITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-- 170
               T  A    G D R   LT   AR  +  M+       +L+D   EI L    QA  
Sbjct: 64  SGLDTLKALRHNGSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAAR 123

Query: 171 ----------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
                         S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +
Sbjct: 124 GENVFSDEVIQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVH 183

Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244
           I +++RK   ++R  A    + N 
Sbjct: 184 IRNLLRKLNVRSRVAATIMYLENK 207


>gi|269955414|ref|YP_003325203.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304095|gb|ACZ29645.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 212

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  ++EG ++ E+   L I+  TV  ++     K     R+ A+  A R  
Sbjct: 151 LTPREAQVLALVAEGCSNAEVGRRLFIAEATVKTHLLRAFAKLGVDDRTAAVTEARRRG 209


>gi|154486803|ref|ZP_02028210.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis
           L2-32]
 gi|154084666|gb|EDN83711.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis
           L2-32]
          Length = 245

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 164 LLAAYQ----ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           +L+A+Q    AN      +H  +   L+ RE E +  I+ G T  E+A  L IS  TV  
Sbjct: 159 VLSAFQNGPSANGAFGGPIHDDELDRLSNREQEVMRLIARGYTYKEVASELFISIKTVET 218

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++S++RK     RS    +A    IV
Sbjct: 219 HMSSVLRKLQLSNRSELTRWAADRRIV 245


>gi|330809798|ref|YP_004354260.1| two-component system response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377906|gb|AEA69256.1| putative two-component system response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 222

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGL 144
            M +        +LQ+       V  T+ ++              Y         +   L
Sbjct: 59  RMPVLNGLGAARILQQRQPGIKVVIFTMDDSPDHLEAAIGAGAVGYLLKDASRDEVLDAL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         + A     M +       +   LT RE + L  ++ G ++ 
Sbjct: 119 KRVAQGEEALNS------SVSARLLRRMTERGANGATQVQALTARERQVLGLVAGGFSNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 173 EIGEKLGIAPGTAKAHVERVIGKLGAADRTQAAVRGVALGLV 214


>gi|309791785|ref|ZP_07686273.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308226191|gb|EFO79931.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 205

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 45/100 (45%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R++ R      G  AA   ++ +  +        LT RE + L  +++G  +  I
Sbjct: 100 LIEAIRVVHRGDATLAGSAAARVLDLLRRGEGAVAAADLLTPRERDILALLAQGDDNRAI 159

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A+ L +S  TV N ++ I +K     R+ A   AV+  +V
Sbjct: 160 ALKLSLSEKTVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 199


>gi|110224491|emb|CAJ86500.1| quorum-sensing transcriptional regulator [Serratia marcescens]
          Length = 248

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               + A YQ     +      +    + RE E + W S GK+  EIA+ILGI   TV  
Sbjct: 153 MHGKMTALYQEMSTPADFEKMNQREFFSKRENEIIYWASLGKSYQEIALILGIKLTTVKY 212

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I + ++K        AI   V   ++
Sbjct: 213 HIGNAVKKLGVTNAKHAIRLGVELQLI 239


>gi|238783876|ref|ZP_04627894.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
 gi|238715263|gb|EEQ07257.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
          Length = 209

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 12/132 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL---AAYQANMFKSYDVHW- 180
           G+D R   LT   AR  +  M+       +L+D   EI L     A Q     S +V   
Sbjct: 76  GVDARIIILTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRQAAQGEKVFSDEVALY 135

Query: 181 --------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                       ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 136 LSSRHEQVNPFGELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195

Query: 233 RSGAIAYAVRNN 244
           R  A    + N 
Sbjct: 196 RVAATIMFLENK 207


>gi|331699447|ref|YP_004335686.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954136|gb|AEA27833.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 211

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
               +          L+ RE++ +  ++ G+T+ EIA  L +S +TV  ++ ++  K   
Sbjct: 135 RHLTTPAPRPTLPEPLSPREIDVVRAVARGRTNAEIAADLFVSLSTVKTHLTNVQAKLGA 194

Query: 231 KTRSGAIAYAVRNNIV 246
           + R    A+A  + +V
Sbjct: 195 RNRVEVAAWAWEHGLV 210


>gi|297162582|gb|ADI12294.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 235

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 6/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +R   +   +    +L+R      L    F       T  +   + +         +   
Sbjct: 63  IRMPTMDGLEATRRILRRTPDCRVLMLTTFDLDHYVYTALSVGASGFLLKDVTPEHLAAA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + L+     ++         L+  + +    +   H      LT RE+E    +  G ++
Sbjct: 123 VRLVDTGDALLAPSITRR--LVERFASPSAPAPAQHADL-AALTPRELEVPGLLGRGLSN 179

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+AV L +S  TV +++A I  K A + R+ A+  A    +V
Sbjct: 180 AELAVELTLSEATVKSHVARIFAKLALRDRAQAVVLAYETGLV 222


>gi|150004020|ref|YP_001298764.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254882923|ref|ZP_05255633.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294778059|ref|ZP_06743493.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|319639728|ref|ZP_07994460.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|149932444|gb|ABR39142.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254835716|gb|EET16025.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294448117|gb|EFG16683.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|317388644|gb|EFV69491.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 254

 Score = 86.2 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 1/172 (0%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-FCPVFHTLPENITPPAGMDNRYCSLT 134
            +V SD    L+       +  Y   +++  +L     FH       P          L 
Sbjct: 83  EVVPSDEINRLMEINEAGFRFYYDQPIEKRLDLSIEYNFHIHTSEKHPHLIHHKLTPVLL 142

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                I + L  +       + D +        +    F+        +  L+ RE E L
Sbjct: 143 SGKGDIWLALCTVSLSPEKNIGDVVISDHTCTDHYIYSFEGRRWRKQPELILSDREKEIL 202

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               +G ++ EI   L I  NTV  +   I  K   +  + A+  A    ++
Sbjct: 203 QLSVKGLSNTEIGETLFIDANTVKFHKKKIFEKLHAENITEAVGIAANLRLI 254


>gi|300789707|ref|YP_003769998.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799221|gb|ADJ49596.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 221

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 11/171 (6%)

Query: 81  DWPFDLVRCMALSEKDK---YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSL 133
             P  ++  + + E D      ++L+ P      +    F    +         + +   
Sbjct: 46  HHPDVVLMDIRMPELDGLAATRHLLEDPGVSTRVVILTTFDLDEDVYGALRAGASGFLVK 105

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             +   +   + ++     ++         L+A + A   +           LT RE E 
Sbjct: 106 DTEPEELIHAVRVVARGDALLAPSITRR--LIAEFAARGTRP--AASPALDRLTDREREV 161

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ ++ G ++DEIA  L +S  T   +++ IM KT T  R+  +  A  + 
Sbjct: 162 LSLVAAGLSNDEIARELTLSPATAKTHVSRIMTKTGTHDRAQLVVLAYESG 212


>gi|291301282|ref|YP_003512560.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570502|gb|ADD43467.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 206

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  ++ G ++  IA  L I+  TV  ++  I  K    +R+ A+A A+   +
Sbjct: 144 LTSREVEILRALARGDSNRAIAKRLFITEATVKTHLVHIYAKLDVDSRTAAVAAALERRL 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|228474840|ref|ZP_04059571.1| transcriptional regulatory protein DegU [Staphylococcus hominis
           SK119]
 gi|314935685|ref|ZP_07843037.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
 gi|228271503|gb|EEK12871.1| transcriptional regulatory protein DegU [Staphylococcus hominis
           SK119]
 gi|313656250|gb|EFS19990.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
          Length = 217

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          ++    L   V  +  G   +         D      L+  +    
Sbjct: 91  FHVLRNGAKGYILKNSPDEQLILAVRTVYKGETYI---------DMKLTTSLVNEFVNVS 141

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +           L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K+
Sbjct: 142 NQDEKATNDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLNLKS 201

Query: 233 RSGAIAYAVRNNIV 246
           +   + YA++  ++
Sbjct: 202 KPELVEYALKKKLL 215


>gi|51894231|ref|YP_076922.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857920|dbj|BAD42078.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 211

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           M L    R + R  +     +  Y     +S      +   L  +++  +  +++G T+ 
Sbjct: 110 MDLKRSIRAVARGEVAMDPKVVGYLMQQMRSPSADKEERIPLNRQQLAIIRLVAQGYTNR 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  + +S  TV  Y+A  MR+   K R  A   A +N  +
Sbjct: 170 EIAERMFLSEKTVKGYLAEAMRRMGVKNRVEAAMVASKNGWI 211


>gi|327450891|gb|EGE97545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|328754312|gb|EGF67928.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
          Length = 237

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 10/174 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V    P  ++  + +   D       ++  +++   +  T   +      +D      
Sbjct: 40  DVVKETAPDVVLMDVQMPVMDGVAATAKIREFSDVKVVILTTFDRDDYLFDALDAGASGF 99

Query: 134 TF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D   +  GL  +     ++  +    +   + +Q        V   K  +LT RE
Sbjct: 100 MLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGT-----VTGSKAEQLTARE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +E    ++ G ++ EIA  L +S  TV  ++++ + K   + R   +A  +R  
Sbjct: 155 IEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALVLRVG 208


>gi|298252261|ref|ZP_06976064.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546853|gb|EFH80721.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1056

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 120  ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
            +         +  L  D       L+            R W   +L A+           
Sbjct: 929  LVLVQARGEGFLRLFLDEGEEVETLLRELLPSLTEKPLRAWTQSILHAFAHPFSPQTSSP 988

Query: 180  WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                FE L+ +E   L  ++ G+++ EIA  L IS NTV  ++ SI RK    +R  A A
Sbjct: 989  DSTLFEPLSTQEQRVLALLAAGRSNPEIAETLIISVNTVKGHVKSIYRKLDVNSRIEASA 1048

Query: 239  YAVRNNIV 246
             A R  ++
Sbjct: 1049 AASRLKLI 1056


>gi|289645062|ref|ZP_06477093.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289505136|gb|EFD26204.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 216

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 6/176 (3%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++    +V  D    ++  ++          L +   +    F              + +
Sbjct: 44  QRTRPDVVLLDIRMPVLDGLSALRAIVEDPHLDQTRAVMVTTFELDEYVFEALRSGASGF 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                + A +   + ++     ++       +           +   VH      LT RE
Sbjct: 104 VLKDAEPAELLRAIRVVAAGESLLSPTVTRRV------IDAFARRPAVHTPDLSGLTARE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E +  +  G ++DEIA  L IS  T   +++ +M K   + R+     A +  +V
Sbjct: 158 REVMGLVGRGLSNDEIAQRLFISPATARTHVSRVMVKLGARDRAQLAVLANQAGMV 213


>gi|209526078|ref|ZP_03274610.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328]
 gi|209493466|gb|EDZ93789.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328]
          Length = 105

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 41/69 (59%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D  +     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT+T  R  
Sbjct: 2   SDSKFKSPVSLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVE 61

Query: 236 AIAYAVRNN 244
            + ++++  
Sbjct: 62  LVRWSLQWG 70


>gi|220905737|ref|YP_002481048.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219862348|gb|ACL42687.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425]
          Length = 100

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 40/63 (63%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  L+ RE++ +  I+ G ++ +IA  L IS+ TV+N++++I+ KT T  R   + +AV
Sbjct: 8   ENQSLSDRELQVIELIAAGLSNQQIAEKLEISKRTVDNHVSNILEKTKTGNRVALVRWAV 67

Query: 242 RNN 244
           +  
Sbjct: 68  QWG 70


>gi|171060622|ref|YP_001792971.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170778067|gb|ACB36206.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 222

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 4/144 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
            +      H   +++ P        Y        ++   L  +      +       +  
Sbjct: 76  AQSVVVTIHDDDDHLFPALQAGAYGYLLKEQPREQLMEHLQRISQGEPPLSPSIARRMIS 135

Query: 165 LAAYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             + QAN  ++Y     +   + +LT RE E L  +++G T  EI V LG+SR+T+ +Y+
Sbjct: 136 YFSAQANRPQAYQPTTDQLMPNVQLTEREREVLLRVAKGFTLPEIGVQLGLSRHTIADYV 195

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
             I RK    +R+ A   A R  +
Sbjct: 196 KQIYRKLNVSSRAEAALEAQRLGL 219


>gi|75812313|ref|YP_319932.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705069|gb|ABA24743.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 220

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 5/124 (4%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            +   + Y     + + I   +   +   + +    + + GLL  +     K        
Sbjct: 94  ISSGADSYILKKNNTSLIVEAIKSTY-NNKSLFDSEIIQRGLLKIFPTQKAKGKIF---- 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+  L  I+ G ++ +I   L I  NTV N+  +I  K    +R  AI     
Sbjct: 149 DDHLTQREISVLALIAAGFSNKQIGEKLFIGENTVKNHARNIYSKLGVDSRINAILKGSE 208

Query: 243 NNIV 246
              +
Sbjct: 209 LGYI 212


>gi|328885722|emb|CCA58961.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 221

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  +T RE E L  ++EG +S EI  +L IS  TV  + A++++K   + R     YA+
Sbjct: 155 PDRAITEREEEILKLVAEGHSSKEIGDLLVISPKTVERHRANLLQKLGLRDRLELTRYAI 214

Query: 242 RNNIV 246
           R  ++
Sbjct: 215 RVGLI 219


>gi|297193607|ref|ZP_06911005.1| response regulatory protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151843|gb|EFH31371.1| response regulatory protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 207

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           LF   R   + R      +A+   +  +           LT RE + L  ++ G  + EI
Sbjct: 112 LFAAIRAAAQGRTALSAPVASRVMDRMRG-----AAGPSLTDRERDILGQLARGLGNREI 166

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 167 ARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKEQRLL 206


>gi|300087378|ref|YP_003757900.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527111|gb|ADJ25579.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 247

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 151 GRIILRDRLWEIGLLAAYQANMF----KSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            R+I  D      LL A   N+     K+      +   LT REV+ L  +  G ++ EI
Sbjct: 132 HRVIEGDAQVSTVLLRAAVENLLQNGRKTLAERTAEAAHLTAREVDVLRLMGNGDSNKEI 191

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  L I+ +TV  +I +++ K   ++R+ A   A +  I
Sbjct: 192 SSSLNITLDTVKKHIRNVIDKLQARSRTHASIIAAQAGI 230


>gi|254385617|ref|ZP_05000941.1| response regulator [Streptomyces sp. Mg1]
 gi|194344486|gb|EDX25452.1| response regulator [Streptomyces sp. Mg1]
          Length = 210

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  + +G T+ +I   L IS  TV  ++    +K +   R+ A+  A+   +
Sbjct: 149 LSERECEVLQLVRQGLTNADIGRRLFISEATVKTHLLRSFKKLSVSDRTAAVITALERGL 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|168070046|ref|XP_001786672.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660742|gb|EDQ48513.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 214

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 10/161 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           V    +        + +R       +  +  E     A +      Y         +  G
Sbjct: 57  VNMPVMDGVAATALIKERMPATKIIMLTSYKEVEYVLAALSHGAEGYLLKAIHPKDLAAG 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++   G +I ++       +A+       S       +F LT RE+E L  ++ G  +
Sbjct: 117 IRVVQAGGTLISQE-------MASKMIKNMNSATPAKHNEFGLTAREIEVLHKLAAGLRN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L +S  TV NYI++I  K   K R  A   A  + 
Sbjct: 170 QEIAEALFLSEGTVKNYISTIYSKLNVKGRREATQKARDSG 210


>gi|15613614|ref|NP_241917.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173666|dbj|BAB04770.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 212

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 4/160 (2%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLM 145
           VR  + +  +    +  R  E    +  T  ++      +    C  L  D    R+   
Sbjct: 55  VRMPSKTGLEATKEIRARHPEAKILILTTFADDEYALEALKYGACGYLLKDADADRLIHS 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +       +  D      +L           +    +   LT RE+  +  + EGK++ E
Sbjct: 115 IKSALNGGMSLDDTVAAKVLPRLLHQQTGEVEERTAR---LTKRELAVVKLVGEGKSNQE 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L +S  TV NYI+  + K   + R+    YAV+  +
Sbjct: 172 IADALFLSVGTVKNYISQALDKLELRDRTQLAIYAVKQQL 211


>gi|325676336|ref|ZP_08156015.1| response regulator [Rhodococcus equi ATCC 33707]
 gi|325552897|gb|EGD22580.1| response regulator [Rhodococcus equi ATCC 33707]
          Length = 231

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 118 ENITPPAG-MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           E++  P+G  +    +L  +  ++   L + F + ++   D     G+ A  +       
Sbjct: 105 EDVLRPSGFREGSSVALGLERGQVTSVLHVSFTRSQV---DSTVRAGIEALARQCRRIVA 161

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    + F L+GRE + L  +++G ++ EIA  L ISR TV  ++ +I  KT T++R   
Sbjct: 162 DQSERESFRLSGREHQILVLVAQGASNAEIAAELLISRRTVATHLENIFAKTGTRSRVRV 221

Query: 237 IAYAVRNNIV 246
              A    I+
Sbjct: 222 AVRATELGIL 231


>gi|302539653|ref|ZP_07291995.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302457271|gb|EFL20364.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 219

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 11/172 (6%)

Query: 81  DWPFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLT 134
             P   V  +A+      +    L R       +  T+ +N        A   + Y   +
Sbjct: 51  HHPDLAVLDIAMPRMTGLQAARELSRSQPGIRLLMLTMYDNEQYFFEALAAGASGYVLKS 110

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +                  L+   + A  + ++ ++       +  +T RE E L
Sbjct: 111 VADRDLVEACRATMRGE-----PFLYPGAVNALIRNHLDRARHGEPLPERAITDREEEIL 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++EG TS +IA +L IS  TV  + A++++K   K R     YA+R  ++
Sbjct: 166 KLVAEGHTSQQIADMLVISVKTVERHRANLLQKLGLKDRLELTRYAIRAGLI 217


>gi|87301837|ref|ZP_01084671.1| possible transcriptional regulator [Synechococcus sp. WH 5701]
 gi|87283405|gb|EAQ75360.1| possible transcriptional regulator [Synechococcus sp. WH 5701]
          Length = 89

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  ++ G T+ EIA+ L IS+ TV+N++++I  KT  K R   + +A+ N  
Sbjct: 14  LSERELEIIERVATGLTNQEIALELMISKRTVDNHVSNIFTKTGAKNRVALLNWAMDNGK 73

Query: 246 V 246
           +
Sbjct: 74  I 74


>gi|225873102|ref|YP_002754561.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794212|gb|ACO34302.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 237

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 41/82 (50%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L     ++ +       K + LT RE+E +  I EG ++ +IA    +S  TV  ++++I
Sbjct: 152 LVGALHDLMQKAATPERKTYGLTPREMEVVGCIVEGCSNRDIAKQFTLSEETVKRHLSNI 211

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             KT   TR     +A+ +++V
Sbjct: 212 FDKTGVSTRLELAMFAIAHHLV 233


>gi|222106444|ref|YP_002547235.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737623|gb|ACM38519.1| two component response regulator [Agrobacterium vitis S4]
          Length = 216

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L                   +LT RE E L  ++ G T+ EIA  L I+  TV  ++  I
Sbjct: 131 LVRRMLTRVSRTSPAEDAISQLTTREREILQEVARGATNKEIARRLSIAPGTVKVHVERI 190

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K     R+ A   A +  +V
Sbjct: 191 IAKLRVGDRTQAAVLAAQAGLV 212


>gi|239916849|ref|YP_002956407.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281414690|ref|ZP_06246432.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239838056|gb|ACS29853.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 227

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 8/175 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    L+  +  + + K  +   R   +      T  + + P          L  
Sbjct: 52  DVVLMDMQMPLMDGVEATRRIKDTHPAIR---VLAITTFTSEDYLVPALRAGAGGYLLKD 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFELTGREV 191
                 +G +    +G  +L        LLA+ + +       S         +LT RE+
Sbjct: 109 AEPPAILGAIQAVHRGESVLSPA-VAAKLLASIERDRPTVGPTSVQPGSPDGSDLTEREL 167

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L  ++ G+++ EIA  L +S +TV   +  IM K   + R   I  A +  +V
Sbjct: 168 GVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIRAAQLGLV 222


>gi|302535883|ref|ZP_07288225.1| response regulatory protein [Streptomyces sp. C]
 gi|302444778|gb|EFL16594.1| response regulatory protein [Streptomyces sp. C]
          Length = 207

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 12/161 (7%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L   +   E  +    L  P  +     +    +IT   G       L  +        +
Sbjct: 57  LGEGIDGVEATRRITALPGPPHVLVLTTYDTDADITRAIGAGATGYLLKAERPEELFAAI 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                GR  L        + +   A+M        G    LT RE++ L  ++ G  + +
Sbjct: 117 HSAAAGRTTLS-----APVASRVMAHM-------RGTRPTLTDRELDILGQLARGLGNRD 164

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 165 IARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 205


>gi|218677979|ref|ZP_03525876.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 121

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 167 AYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           A+  +    Y++H   D    L+ RE+ECL W + GK   +I+VILGIS +T  +Y+ + 
Sbjct: 38  AHLIHRKAVYELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTA 97

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K    T S A + AV+  I+
Sbjct: 98  RFKLGCATISAAASRAVQLRII 119


>gi|154251602|ref|YP_001412426.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1]
 gi|154155552|gb|ABS62769.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1]
          Length = 921

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            R++     +   L+     +       H  +  ELT RE E L  +S G ++  +A  L
Sbjct: 827 DRLLSEAGEFAPALMPDAGHDENDDISPHLLE--ELTDREREILRLVSNGFSNKALADRL 884

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S NTV  ++ +I  K     R  A++ A    ++
Sbjct: 885 SLSTNTVKWHLRNIFEKLQIGNRMQAVSVARHFGLI 920


>gi|296284992|ref|ZP_06862990.1| two component LuxR family transcriptional regulator [Citromicrobium
           bathyomarinum JL354]
          Length = 216

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   VF      I   A     Y         +   L+ +   G  I          
Sbjct: 80  CDSLVVTVFADEDRVIEAIAAGATGYILKNDRPEEVGRNLLTVLEGGSPISP-------Q 132

Query: 165 LAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           +A Y  N+    +     G +  LT RE + L  I+ G    E+A  L I+  TV  +I 
Sbjct: 133 IARYLLNLVPQPEEPKDDGLEIRLTAREKDILRLIAHGFKRQEVADKLNITVGTVGTHIN 192

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           ++ RK    + + A+A A R  +
Sbjct: 193 NVYRKLEVGSNTQAVATANRLGL 215


>gi|169631593|ref|YP_001705242.1| two-component LuxR family response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169243560|emb|CAM64588.1| Putative two-component system response regulator, LuxR family
           [Mycobacterium abscessus]
          Length = 222

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 165 LAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           LA      F+        D +    L+ RE E L  +++G ++ +IA  L +S  TV N+
Sbjct: 136 LAGLVLGEFRRMSSAPAADADETPRLSDRETEVLRLVAKGLSAKQIATRLSLSHRTVENH 195

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
           + S +RK     R     YA+ + +
Sbjct: 196 VQSTLRKLQLGNRVELTRYAIEHGL 220


>gi|149922983|ref|ZP_01911402.1| response regulator receiver [Plesiocystis pacifica SIR-1]
 gi|149816169|gb|EDM75678.1| response regulator receiver [Plesiocystis pacifica SIR-1]
          Length = 371

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 13/149 (8%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +AL+       + +    ++     TLP           R  ++    A+   G  +L 
Sbjct: 225 DLALAGSQLPKALKEWLAPVYRGRRETLP---GFQRRGQGRVLAVELHPAQEPHGGGMLT 281

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            + R + R  L +     A   ++ +  D        LT R+ E   W+S GKT+ EI+ 
Sbjct: 282 IEARALPRAELPQ-----AVADHVPQLVD-----GLGLTPRQAEVALWMSCGKTNAEIST 331

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAI 237
           IL I   TV  ++  I+ +   + R+GA 
Sbjct: 332 ILSIRPATVKKHVERILDRLGVENRTGAA 360


>gi|254785114|ref|YP_003072542.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237684126|gb|ACR11390.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 220

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 2/149 (1%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
               L    KY   +Q   E                + ++    S  F V   +  L  +
Sbjct: 62  NGQDLENLSKYVREIQDSFESVTAALLNAEYESEQESLLEWPCVSGLFYVDTEQEQL--I 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++  D      LL  +     K+       + +LT RE + L  I +G T+ +I+
Sbjct: 120 RGLKCLLDGDFWVPRRLLHTFLDKNRKAPSNIKRPNVKLTKREKQILKLIKDGATNADIS 179

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGA 236
             L +S +TV +++ ++ +K   + R  A
Sbjct: 180 EALSVSEHTVKSHLYNVYKKIGVRNRLEA 208


>gi|87123539|ref|ZP_01079390.1| response regulator like protein [Synechococcus sp. RS9917]
 gi|86169259|gb|EAQ70515.1| response regulator like protein [Synechococcus sp. RS9917]
          Length = 231

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +AN+ +  D    +   L+ R++E L  ++EG ++ EIA  L I+ NTV ++++ IM++ 
Sbjct: 157 EANVMEPSD----QGVVLSERQLEILALVAEGLSNREIATQLQITANTVRDHLSEIMQRL 212

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A++ A+R  ++
Sbjct: 213 GVGNRASAVSSALRLRLI 230


>gi|330467590|ref|YP_004405333.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328810561|gb|AEB44733.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 239

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 57/176 (32%), Gaps = 10/176 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCS 132
            +V  DW       + +    + +    R       V     +    P  +      Y S
Sbjct: 48  HVVLVDWELAGPTTLDMVGALRTHAPESR-----IVVLSGRDDPRIVPELLALGVRAYLS 102

Query: 133 LTFDVARIRIGLMLLFPKGRI--ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +     +   +  +  +     ++        +    +    +           L+ RE
Sbjct: 103 KSVTSDELLATIRSVSREEGRVHLILSAGRRPVVPGGGEFPRERGGSRAAPHSVRLSERE 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L+  +E  ++ +IA  L IS  TV  ++  + +K    +R  A+  A+   ++
Sbjct: 163 HDVLSLAAEALSNSQIARRLYISEGTVKRHMRHVFKKLNAVSRIDAVNKAISAALI 218


>gi|311067076|ref|YP_003971999.1| two-component hybrid sensor and regulator [Bacillus atrophaeus
           1942]
 gi|310867593|gb|ADP31068.1| two-component hybrid sensor and regulator [Bacillus atrophaeus
           1942]
          Length = 596

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 9/144 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEI 162
             L    F  +           + Y   + +   +   + L++    +I +D   R+W+ 
Sbjct: 458 RVLILSTFQDIERAKEIIRSGADGYLLKSIESRELAESIRLVYRGATMIDQDLFHRMWD- 516

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                       S     GK++ LT RE+E L  +S+G     IA  L +S  TV NY +
Sbjct: 517 -----GTDEAEPSGLKFDGKEYGLTKRELEVLNLLSQGIRYKTIASELYLSNGTVRNYAS 571

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++  K   K R  A+  A    ++
Sbjct: 572 TLYDKLGVKNREEAVQKARDTGLL 595


>gi|310643754|ref|YP_003948512.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309248704|gb|ADO58271.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 596

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L    F              + Y   + +   +   + L++  G +I +D    +   
Sbjct: 458 RVLILSTFQDTERAKEIMRSGADGYLLKSIESRELAETIRLVYRGGTVINQDLFHRMWDG 517

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              + ++    D   G+++ LT RE+E L  +S+G     I+  L +S  TV NY +++ 
Sbjct: 518 NDEEESVGPRSD---GEEYGLTKRELEVLNLLSQGNRYKTISEKLYLSNGTVRNYASTLY 574

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R  A+  A    ++
Sbjct: 575 DKLGVNNREEAVQKARDTGLL 595


>gi|291302684|ref|YP_003513962.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290571904|gb|ADD44869.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 134

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVI 209
             +  D       +AA   ++            +  L+ RE + L  I+ GK++ EI   
Sbjct: 37  EPLSIDGRMLFKAVAALGIDLEPPKPTALRTSIQRGLSARESQVLLAIASGKSNAEIGRE 96

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+ +TV  +   + RK   + R+ A+A A R  I+
Sbjct: 97  LFITEDTVKTHARRMYRKLGARDRAHAVAEAFRVGIL 133


>gi|253701702|ref|YP_003022891.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251776552|gb|ACT19133.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 223

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++EG ++ +IA  + +S  TV N+  ++M+K    ++   + YA R  +
Sbjct: 157 LTPREQQVLRLVAEGSSTRQIAAAIELSPKTVENHRTNLMKKLDVHSKMELVKYAARLGL 216

Query: 246 V 246
           +
Sbjct: 217 I 217


>gi|158318837|ref|YP_001511345.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158114242|gb|ABW16439.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 214

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRN 215
           + L   G   A         D    +    LT RE E L  I+ G+++ EIA  L +S  
Sbjct: 124 EALLSPGATRAVITRALSHPDAPAPERLASLTAREREVLRLIAAGRSNQEIADELVVSPL 183

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T   ++  I+ K   + R   +  A    +
Sbjct: 184 TAKTHVGRILAKMGARDRVHLVIAAYEAGL 213


>gi|144899605|emb|CAM76469.1| DNA-binding response regulator, LuxR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 228

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 3/135 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQ 169
           F T    +       + +   T     +   L L+    + +     +E   + +     
Sbjct: 84  FSTREHVVAAVQAGASGFIPKTVSGTAMVNALRLVLSGEKYLPSSSFFEDVTVHMPMMPL 143

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                          +L+ RE E L  + EG+T+ EIA+ L +   T+  ++ ++ RK  
Sbjct: 144 QQRPTRTGEIPAPFDKLSRRESEILALLVEGRTNKEIAIALELQEITIKVHLRNVYRKIG 203

Query: 230 TKTRSGAIAYAVRNN 244
              R+ A+  A+ + 
Sbjct: 204 AANRAQAVRIAMSSG 218


>gi|318076428|ref|ZP_07983760.1| two component system response regulator [Streptomyces sp. SA3_actF]
 gi|333026664|ref|ZP_08454728.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746516|gb|EGJ76957.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 209

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
               ++I    G   R         +  +  +     G+ +L DR  +  LLA  +A   
Sbjct: 81  FADDDSILAALGAGARGYLTKNAGRQDIVRAIRAAAAGQSVL-DREVQDRLLATVRARPT 139

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S     G   +LT RE E LT I +G  +  IA  L +S  TV  +I ++  K   + R
Sbjct: 140 ASGQ---GLPADLTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDR 196

Query: 234 SGAIAYAVRNNI 245
           + A+  A+   +
Sbjct: 197 AEAVRRALTAGL 208


>gi|260430562|ref|ZP_05784535.1| regulatory protein, LuxR [Citreicella sp. SE45]
 gi|260418591|gb|EEX11848.1| regulatory protein, LuxR [Citreicella sp. SE45]
          Length = 253

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 25/249 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---FQEQKLDSI 77
           S  + L   S L  R+      +        + +Y            +   F+++ L   
Sbjct: 7   SIRNRLSEGSHLGQRVDAAFRQMQGVGFDGMIYDYTPMVSGPGADVPIPSVFEQRNLGDE 66

Query: 78  VSSDWP------FDLVRCMALSEK-------DKYYNVLQRPTEL--FCPVFHTLPE---- 118
           +   W        D V+ +A+          D   + + RP       PV   L E    
Sbjct: 67  MRQHWSEDEYIRLDPVQRVAMRSAAPFCWSYDSDIDSIIRPMLTPDIEPVMSYLREREVF 126

Query: 119 -NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             +T P  + N   +    V+  R          R I    L    L       +     
Sbjct: 127 SGVTVPIHLPNGDFATVTGVSLGRRQN-WSGGTSRAIADLSLI-AHLFNQSAVELLGFDH 184

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               ++  LT RE ECLT+ S G ++ E A I+  S  TV  ++ + MRK   + R+ A+
Sbjct: 185 EDGTQEVRLTPRERECLTYASFGNSAKETARIIDRSVPTVVMHLNAAMRKLGARNRTHAV 244

Query: 238 AYAVRNNIV 246
             A R  ++
Sbjct: 245 TIATRRRLI 253


>gi|259502947|ref|ZP_05745849.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM
           16041]
 gi|259169072|gb|EEW53567.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM
           16041]
          Length = 217

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           DV+      L+ RE E    ++ G ++ EI+  L IS  TV  + A+I RK    +R   
Sbjct: 146 DVNLKGYNVLSKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHLHSRVEL 205

Query: 237 IAYAVRNNIV 246
           + YA+ ++++
Sbjct: 206 VRYAIHHHLI 215


>gi|118471585|ref|YP_888614.1| hypothetica lprotein [Mycobacterium smegmatis str. MC2 155]
 gi|118172872|gb|ABK73768.1| tetratricopeptide repeat family protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 546

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 7/185 (3%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L R D+ + Q+       D         A      +    +    +    F    +N+  
Sbjct: 364 LARDDIGEAQRY-----CDQLAAGAEAFATPGYRGWAAHARGAVLVRRGEFEAALDNL-G 417

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWG 181
            A  + R     +D+A +   + L                     Y+    +   V    
Sbjct: 418 AALREYRLQQERYDIAEVYEWMALAHRGLGDDTAADTDIATAENIYEQLAVQPSGVCGRA 477

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE+E L  I+ G T+ ++A    IS  TV  ++A+I  K    +R+ A+ +A 
Sbjct: 478 SPGGLTRREIEVLRAIAGGATNRQVAHQFVISDKTVGRHLANIYTKLGVSSRTAAVTWAY 537

Query: 242 RNNIV 246
           +N +V
Sbjct: 538 QNGVV 542


>gi|300788348|ref|YP_003768639.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797862|gb|ADJ48237.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 223

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E LT ++ G ++ EIA  L +S  TV  ++  I+ K   + R  A+  A    +
Sbjct: 160 LTERELEVLTKLARGLSNAEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLAYDIGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|315505839|ref|YP_004084726.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315412458|gb|ADU10575.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 222

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D R   L   V  +  G  LL P     L DR           A+
Sbjct: 91  VYAALRAGASAFLLKDTRPADLAEAVRVVARGEALLAPTVTRRLLDR----------YAD 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          LT RE E LT  +   ++ EIA  L +S  TV  ++++I+ K + +
Sbjct: 141 RLPAPAPAGDVLAVLTAREREVLTLTARALSNAEIAARLHLSTATVKTHVSAILTKLSLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    +V
Sbjct: 201 DRIQAVVLAYDTGLV 215


>gi|302519506|ref|ZP_07271848.1| two component system response regulator [Streptomyces sp. SPB78]
 gi|302428401|gb|EFL00217.1| two component system response regulator [Streptomyces sp. SPB78]
          Length = 221

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
               ++I    G   R         +  +  +     G+ +L DR  +  LLA  +A   
Sbjct: 93  FADDDSILAALGAGARGYLTKNAGRQDIVRAIRAAAAGQSVL-DREVQDRLLATVRARPT 151

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S     G   +LT RE E LT I +G  +  IA  L +S  TV  +I ++  K   + R
Sbjct: 152 TSGQ---GLPADLTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDR 208

Query: 234 SGAIAYAVRNNI 245
           + A+  A+   +
Sbjct: 209 AEAVRRALTAGL 220


>gi|119471494|ref|ZP_01613935.1| putative transcriptional regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
 gi|119445593|gb|EAW26878.1| putative transcriptional regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
          Length = 218

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 8/162 (4%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  S  D +  + ++   L       L      P   +    S    V        +L  
Sbjct: 51  IETSSSDAWGKLKEQLVNLRVKCDIILFNLDENPELANRALLSGIRGVFYTTDNADVLMK 110

Query: 150 KGRIILRDRLW--------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             R++L D+LW         +  +  +  +          +  +LT RE   ++ +S G 
Sbjct: 111 GIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSNGS 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + EIA  L IS +TV  ++ S  RKT  + R   +++A +N
Sbjct: 171 KNKEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212


>gi|30315261|gb|AAP30848.1|AF503776_1 HalR [Hafnia alvei]
          Length = 246

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L W S G T  EIA I+GIS  TV  ++ +++ K        AI   V   +
Sbjct: 181 FTAREHEVLYWASMGNTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELEL 240

Query: 246 V 246
           +
Sbjct: 241 I 241


>gi|330503564|ref|YP_004380433.1| regulatory protein LuxR [Pseudomonas mendocina NK-01]
 gi|328917850|gb|AEB58681.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01]
          Length = 907

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 37/78 (47%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q          + ++ +++ RE E L  ++ G ++ +IA  + +S  T+  ++ ++  K 
Sbjct: 827 QCRRLSIDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHLHNLFSKL 886

Query: 229 ATKTRSGAIAYAVRNNIV 246
             ++R+ A+       ++
Sbjct: 887 GVRSRTQAVLKGKSLGLL 904


>gi|317050571|ref|YP_004111687.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316945655|gb|ADU65131.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 224

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 8/176 (4%)

Query: 77  IVSSDWPFDLVRCMALS---EKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDNRYC 131
           I+ S  P  ++  + L      +   ++L++    ++     H  PE +     +     
Sbjct: 42  ILKSSKPDVIILDINLPDKNGMELAEDILRKHGLVKILFLTMHDEPEYVGRVLHIGAAGY 101

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGRE 190
            L        I  +    +G  +L+  L E   +A  ++     + +        L+ RE
Sbjct: 102 ILKNAADTELINAIRAVKRGEFVLQRGLMEN--IARQKSRKLSGHTIEAAPPKASLSKRE 159

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I+ G T  E+A  LGIS  T+  + A+IM    TK RS  + YA+ + ++
Sbjct: 160 TEVLQLIALGYTQQEVADQLGISIKTIETHKANIMESLGTKKRSELVRYALAHGLI 215


>gi|238062472|ref|ZP_04607181.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237884283|gb|EEP73111.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 226

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 177 DVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           D H  +  + LT RE E LT +++G ++ EI   + +S  TV +++++I+ K     R  
Sbjct: 149 DEHAVRAVQRLTEREREVLTLLADGLSNSEIGGRMFLSAGTVKDHVSAILTKLGVDNRVR 208

Query: 236 AIAYAVRNNIV 246
           A   A R  ++
Sbjct: 209 AALLAERAGLL 219


>gi|229056740|ref|ZP_04196143.1| Sensory transduction protein ydfI [Bacillus cereus AH603]
 gi|228720587|gb|EEL72150.1| Sensory transduction protein ydfI [Bacillus cereus AH603]
          Length = 207

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 77/215 (35%), Gaps = 17/215 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  + E   +  F ++      E+ L  I   + P  ++  + + +    
Sbjct: 1   MDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKE-PDVILMDLNMPKMSGL 57

Query: 98  -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                L +  +   P+      N     +         Y     D        +    +G
Sbjct: 58  ETIEALNK-KQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 115

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            I+L+  + E   +  Y+     +  V       LT +E+  L  I+ G  + EIA  +G
Sbjct: 116 EILLQPDIMEK--IVKYKRKEVHADKVEGN---NLTEKELFVLKAIARGYKNKEIAFDMG 170

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 171 IAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205


>gi|163786674|ref|ZP_02181122.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Flavobacteriales bacterium ALC-1]
 gi|159878534|gb|EDP72590.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Flavobacteriales bacterium ALC-1]
          Length = 136

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           KD +++ RE E L  I+EG ++ EIA  L +S +T+  ++++++ K   K R+ A+  A 
Sbjct: 72  KDLDISNREYEVLQKIAEGLSNKEIAESLFLSESTIKTHVSNLLVKLDAKRRTQALKKAK 131

Query: 242 RNNIV 246
              I+
Sbjct: 132 SLQII 136


>gi|330961775|gb|EGH62035.1| regulatory protein, LuxR [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 910

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 16/179 (8%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDNRYCS-------LT 134
           F+ ++    + + +   + +R  E+   +     + + I    G   +  +       L 
Sbjct: 731 FERLKGEGQASEQRLQALEKRAQEVGSQLLQLIAMTQQIGLLLGQARQDEARNLLLRCLP 790

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELT 187
                  +   +L  +    L ++L +         LL         +       +  L+
Sbjct: 791 VAAGGALLPFRVLLGEHARWLHEQLLQAPPGTVRDALLEKLPPCTAPALPEPAHGNDCLS 850

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    ++
Sbjct: 851 VRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGLL 909


>gi|330817555|ref|YP_004361260.1| response regulator receiver protein [Burkholderia gladioli BSR3]
 gi|327369948|gb|AEA61304.1| response regulator receiver protein [Burkholderia gladioli BSR3]
          Length = 324

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + F LT RE E L W+S GKT+ +I  IL ++  TVN ++  + RK   +TRS
Sbjct: 259 ERFGLTTREAEVLLWVSRGKTNRDIGDILDMAPRTVNKHLEHLFRKLHVETRS 311


>gi|318061834|ref|ZP_07980555.1| two component system response regulator [Streptomyces sp. SA3_actG]
          Length = 221

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
               ++I    G   R         +  +  +     G+ +L DR  +  LLA  +A   
Sbjct: 93  FADDDSILAALGAGARGYLTKNAGRQDIVRAIRAAAAGQSVL-DREVQDRLLATVRARPT 151

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S     G   +LT RE E LT I +G  +  IA  L +S  TV  +I ++  K   + R
Sbjct: 152 ASGQ---GLPADLTPREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDR 208

Query: 234 SGAIAYAVRNNI 245
           + A+  A+   +
Sbjct: 209 AEAVRRALTAGL 220


>gi|302528552|ref|ZP_07280894.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302437447|gb|EFL09263.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 216

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 9/201 (4%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY------NVLQRP 105
           L   +G++  + V        +    V    P  ++  + +   D          + + P
Sbjct: 17  LRTILGSAGDIEVVAQAGDGAEAVEEVVRHRPSVVLMDLRMPGVDGLAAIERICTLPEPP 76

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             +    F      I         +   +     +   + +      ++       +  L
Sbjct: 77  AVVALTTFDADTYVIRALRAGAAGFLVKSTPPEDLIGLVRVAADGHTVLSPSAARRLVAL 136

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +A      +  D    +   LT RE + L  + EG ++ +IA  L ++  TV +Y++ ++
Sbjct: 137 SADGH---RRDDEARRRTAGLTERERDVLACLGEGLSNADIAARLHLAEATVKSYVSRML 193

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R+ A   A    +V
Sbjct: 194 VKLDCTNRTQAGLLAHEAGLV 214


>gi|331699089|ref|YP_004335328.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953778|gb|AEA27475.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 227

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 11/145 (7%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y + T     +   +  +     +           L
Sbjct: 90  VFLALSVSDAAEDVIAVIRAGARGYVTKTISGRDLADAVRRVHGGDAVFSP-------RL 142

Query: 166 AAYQANMFK-SYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           A +  ++F          D EL   T RE + L  ++ G    EIA  L IS  TV  ++
Sbjct: 143 AGFVLDVFSDRPGAAPPGDPELDLLTRRERDVLRLLARGYAYKEIAGELFISVKTVETHV 202

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           +S++RKT    R     +A    +V
Sbjct: 203 SSVLRKTQLSNRYELSRWASDRRLV 227


>gi|298369040|ref|ZP_06980358.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298283043|gb|EFI24530.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 218

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L +++ G ++  IA  L ++ +T+  ++ +I+RK    +R  A  YAV++ +
Sbjct: 153 LTPREMEILGYLAAGHSNKVIARHLELAESTIKVHVQNILRKLNLSSRVQAAVYAVQHKV 212


>gi|256785041|ref|ZP_05523472.1| regulatory protein [Streptomyces lividans TK24]
 gi|289768934|ref|ZP_06528312.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24]
 gi|289699133|gb|EFD66562.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24]
          Length = 166

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 2/154 (1%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-CSLTFDVARIRIGLMLLFPKG 151
           SE    +  L+RP +L   V + L + +    G D R   +    +AR     +   P  
Sbjct: 2   SEAVTAFECLERPYDLAR-VRYRLADALLAAGGDDERARATELLRLARTVADHLGARPLS 60

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             +          L      +  S          LTGRE + L  +S+G+T+ +IA  L 
Sbjct: 61  DAVAVLGRRARLTLGRAAGPVPASGPADPADALGLTGRERDVLRLVSDGRTNRQIAEELF 120

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IS  T + ++++I+ K     R  A A A R  +
Sbjct: 121 ISPKTASVHVSNILAKLGVSGRGEAAAVAHRLAL 154


>gi|209863940|gb|ACI88885.1| AlnR6 two component response regulator [Streptomyces sp. CM020]
          Length = 218

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 63/163 (38%), Gaps = 5/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   +   +    +++   R   L    F              + +         +  G
Sbjct: 55  VRMPGMDGIEATRRIVESGGRSRVLVLTTFDLDEYAYAALRAGASGFLLKDALPDELTAG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I      +  L+ A+ A++  +      +   LT RE E LT I+ G ++
Sbjct: 115 IRAVASGDAVIAPGLTRK--LIDAFSAHLPGTTPAQDRQLTALTTREREVLTAIATGWSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    ++ +TV ++++ I+ K   + R  A+ +A    +V
Sbjct: 173 TEIANRFSLAESTVKSHVSHILAKIGARDRVQAVIFAYDMGLV 215


>gi|320457478|dbj|BAJ68099.1| putative two-component response regulator [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 132

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 33/73 (45%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A +A    S +        LT RE E ++  + G TS EI   LGI  +TV  YI  + 
Sbjct: 52  TAQEAYSKLSPEDAGQYHKNLTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVT 111

Query: 226 RKTATKTRSGAIA 238
            K   K R+ A+ 
Sbjct: 112 EKMDVKNRTQAVI 124


>gi|253987738|ref|YP_003039094.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638616|emb|CAR67235.1| similar to probable transcription regulator sdia of escherichia
           coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779188|emb|CAQ82348.1| similar to probable transcription regulator SdiA of Escherichia
           coli [Photorhabdus asymbiotica]
          Length = 242

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE+E L + ++G TS EIA+ + ++++TV+ ++ +I++K   + +  AIA AV 
Sbjct: 179 ETSFSNRELEVLRYTADGMTSSEIALTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAVL 238

Query: 243 NNIV 246
              +
Sbjct: 239 LGYI 242


>gi|154494182|ref|ZP_02033502.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC
           43184]
 gi|154086044|gb|EDN85089.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC
           43184]
          Length = 192

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 65/184 (35%), Gaps = 7/184 (3%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           ++  D  Q   L S+++  +P   +      E                     L  +   
Sbjct: 9   IILSDTLQSIGLQSMLTDYFPPVEISHYPTFEAFSTSGNDTFDYYFTNAALFVLYADFFL 68

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           P         +  D      GL           ++ + E       Q    ++  +    
Sbjct: 69  PR---RSKTMVLIDETEGEGGLSATSHITIKASQEVIIE----QLEQLFTGENNSISSDN 121

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + EL+ RE + L  I +G T+ EIA  L IS NTV ++  +I  K   KT SG   YA+ 
Sbjct: 122 NKELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTVSGLTFYAIM 181

Query: 243 NNIV 246
           N I+
Sbjct: 182 NGII 185


>gi|78046491|ref|YP_362666.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926045|ref|ZP_08187409.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78034921|emb|CAJ22566.1| putative transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325543571|gb|EGD14990.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 235

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           LL A  A   K       K  +      L+ RE + L+ +  G T+  +A  LGIS  TV
Sbjct: 146 LLPAMVAEPAKPIATRRRKPLQDDRLGALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++  I++K   K R+ A  YAV++ +
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|149925599|ref|ZP_01913863.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149825716|gb|EDM84924.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 237

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 1/135 (0%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  +L    +     D     L   +  +  G   + P     L  ++ +       +  
Sbjct: 102 VVRSLEAGASGYLLKDYSNEELIEHILEVANGGSPISPLIARQLLSKM-QTPRTVDAEYP 160

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K+      K   +T RE++ +  ++ G T+ EIA  +GIS +TV  ++  I +K    
Sbjct: 161 QNKAEQDESQKACSITDRELKVIQQVARGFTAQEIAAQMGISTHTVATHVKRIYKKLHVH 220

Query: 232 TRSGAIAYAVRNNIV 246
           +RS A+  A    ++
Sbjct: 221 SRSEAVYEATLLGLL 235


>gi|50954584|ref|YP_061872.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951066|gb|AAT88767.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 225

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +     D R   LT  +  +  G   +  +   + R  L    L A      
Sbjct: 96  FGGLRAGASGFLLKDARPDDLTAAIRAVAAGDAAVSGR---VTRAMLE---LFADRLPTT 149

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +S          LT RE E L  I++G T+ EI     ++ +TV  ++  ++ K   + 
Sbjct: 150 TESAAPGGDPAAALTPREREILLAIADGLTNGEIGATFHLTESTVKTHVGRVLSKLHLRD 209

Query: 233 RSGAIAYAVRNNIV 246
           R  A+ +A  N ++
Sbjct: 210 RVHAVIFAYDNGLI 223


>gi|330468229|ref|YP_004405972.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328811200|gb|AEB45372.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 208

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 12/164 (7%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---D 136
           P  +V  + +   D       +L         V  T  ++      +    C        
Sbjct: 48  PDVVVMDLRMPGVDGITATSRILADRPATRVLVLTTFGDDDHLYPALTAGACGFLLKDAP 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +  G+           ++ L  +            +          L+ RE E L  
Sbjct: 108 PTDLLDGIRRAAAGDSPFSQEVLRRL------VHRAVHARTGSPEPVGGLSAREQEVLRL 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++EG ++ EIA  L I   TV  +I S+M KT +  R      A
Sbjct: 162 VAEGLSNAEIAERLHIGVTTVKTHITSLMTKTGSPNRVRLALLA 205


>gi|302531524|ref|ZP_07283866.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440419|gb|EFL12235.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 208

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 16/126 (12%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             +       R   +   V  +  G  LL P     + D+L                   
Sbjct: 98  GASGYLLKQVRGQDVVNAVREVAAGRSLLDPVSTARVLDKLRHP---------------- 141

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   LT RE + L  I +G ++ EIA  L ++  TV NY+ S++ K   + R+ A A
Sbjct: 142 PTDELAALTDRERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAA 201

Query: 239 YAVRNN 244
           +  R  
Sbjct: 202 WIARRG 207


>gi|298250271|ref|ZP_06974075.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
 gi|297548275|gb|EFH82142.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
          Length = 1070

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 185  ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +LT REVE L  ++ G T+ +IA  L IS  TV  +++SI  K    +RS A  YA+ ++
Sbjct: 1009 DLTEREVEVLRSLATGLTNAQIAEQLVISPRTVQAHLSSIYNKIGVSSRSAATRYALEHH 1068

Query: 245  I 245
            +
Sbjct: 1069 L 1069


>gi|289706045|ref|ZP_06502418.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557247|gb|EFD50565.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 227

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 8/175 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    L+  +  + + K  +   R   +      T  + + P          L  
Sbjct: 52  DVVLMDMQMPLMDGVEATRRIKDTHPAIR---VLAITTFTSEDYLVPALRAGAGGYLLKD 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFELTGREV 191
                 +G +    +G  +L        LLA+ + +       S         +LT RE+
Sbjct: 109 AEPPAILGAIQAVHRGESVLSPA-VATKLLASIERDRPTVGPTSVQPGSPDGSDLTEREL 167

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L  ++ G+++ EIA  L +S +TV   +  IM K   + R   I  A +  +V
Sbjct: 168 GVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIRAAQLGLV 222


>gi|254445229|ref|ZP_05058705.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198259537|gb|EDY83845.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 225

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A+   ++  + D     +  L+ RE + L  ++E  ++ EIA  L IS  TV+N+  +I
Sbjct: 142 MASVMRSLILNPDAASS-EIPLSDREKQILQLVAESFSTKEIASRLNISVRTVDNHRTNI 200

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           MRK      +    YA+++ ++
Sbjct: 201 MRKLNLHDVAALTRYAIKHELI 222


>gi|120401374|ref|YP_951203.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954192|gb|ABM11197.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 392

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHW---GKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           D L E GL     A   +  D           LT RE +    +  G ++ EIA  L I+
Sbjct: 302 DELCESGLDTPRGAEADRCGDTDGQTGRPPVTLTEREADVFDLMVTGASNQEIADRLVIT 361

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             TV +++  I+RK     R+ AIA+A+   
Sbjct: 362 EGTVKSHVKHILRKYGAVNRAQAIAWALNGG 392


>gi|229028798|ref|ZP_04184901.1| Sensory transduction protein ydfI [Bacillus cereus AH1271]
 gi|228732508|gb|EEL83387.1| Sensory transduction protein ydfI [Bacillus cereus AH1271]
          Length = 207

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 17/215 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  + E   +  F ++      E+ L  I     P  ++  + + +    
Sbjct: 1   MDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKK-PDVILMDLNMPKMSGL 57

Query: 98  -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                L +  +   P+      N     +         Y     D        +    +G
Sbjct: 58  ETIEALNK-KQSHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 115

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            I+L+  + E   +  Y+     +  V   ++  LT +E+  L  I+ G  + EIA  +G
Sbjct: 116 EILLQPNIMEK--IVNYKRKEVYADKV---EENNLTEKELFVLKAIARGNKNKEIAFDMG 170

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 171 IAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205


>gi|227112572|ref|ZP_03826228.1| virulence regulator [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 204

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L+ R+ E L  I+ G ++ +I+  L IS  TV +++ SI R+   + R+ A  
Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|220913336|ref|YP_002488645.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219860214|gb|ACL40556.1| transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 552

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  ++ G+ +  IAV L +S  TV  ++++I  K    +R+ A  YA  + 
Sbjct: 490 PLTPREEQVLQLVASGQGNRAIAVGLFLSEKTVARHVSNIFLKLGLTSRTAATRYAFEHG 549

Query: 245 I 245
           +
Sbjct: 550 L 550


>gi|146280078|ref|YP_001170235.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558319|gb|ABP72930.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 243

 Score = 86.2 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              G D  LT R+ E L  +  G ++ EIA  L IS  TV  ++  +MRK     R+   
Sbjct: 165 AAEGLDMPLTDRQNEVLRSLGAGASNKEIARQLSISEATVKIHVRHLMRKYGVSNRTQVA 224

Query: 238 AYAVRN 243
             A+R 
Sbjct: 225 ILAMRK 230


>gi|333026198|ref|ZP_08454262.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746050|gb|EGJ76491.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 205

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 10/163 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +   +    +L  P      V  T   +      ++           R    
Sbjct: 52  MDLQLGPGIDGVEATRRLLALPAPPRVLVLTTYDTDADVTRAVNAGATGYLLKAERPE-- 109

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              LF       + R      +A       ++         ELT RE + L  +S+G  +
Sbjct: 110 --ELFAAIHAAAQGRTALSPPVAHRVLAHLRAP------RPELTPRERDILAQLSQGLGN 161

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS  TV  ++  + +K    TR+GA+A A    ++
Sbjct: 162 RDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 204


>gi|126731865|ref|ZP_01747669.1| putative two-component response regulator [Sagittula stellata E-37]
 gi|126707692|gb|EBA06754.1| putative two-component response regulator [Sagittula stellata E-37]
          Length = 217

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 57/161 (35%), Gaps = 15/161 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL+R +  S       V+         V   L          +N    L   + +I +GL
Sbjct: 62  DLLRQIRDSRA-ATICVVTTVLGDDASVVGALSAGAQGYLLKENPASLLAHQLRQIHLGL 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L P               +A      F            LT RE E L  IS G  + 
Sbjct: 121 PALSPS--------------IARRIMEHFSLTGPSAPPTHGLTDRETEVLALISRGLRNS 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+A  LG++  TV +YI SI  K    +R+ A  +A R  +
Sbjct: 167 EVARELGLAETTVASYIKSIYGKLGISSRAEASWHATRLGL 207


>gi|126649643|ref|ZP_01721884.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593968|gb|EAZ87891.1| two-component response regulator [Bacillus sp. B14905]
          Length = 203

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  LT RE + LT ++EGKT+ EIA  L +S  TV NYI++I+ K     R  AIA 
Sbjct: 139 ENPLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIAR 195


>gi|318060318|ref|ZP_07979041.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. SA3_actG]
 gi|318079909|ref|ZP_07987241.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. SA3_actF]
          Length = 222

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 2/141 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +    F          A   + +     D A I   + L+     ++         L
Sbjct: 76  PRIITLTTFDLDEYVYNALAAGADGFLLKDADPAEILRAVHLVAAGSAMLHPAAARR--L 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  Y             +   LT RE + L  ++EG+T+ +IA  LG+  +TV  +++ I
Sbjct: 134 IDRYHHANGPRATHAQARTAPLTPRERDVLALLAEGETNADIARRLGMRESTVKAHVSRI 193

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           +       R  A   A    +
Sbjct: 194 LTALEVTNRVQAALVARDAGL 214


>gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281564|gb|ABR89974.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 213

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L  + +G  + EIA  LG++  TV  ++++++       R+ A   A R  +
Sbjct: 149 LTPRQMEVLRLMCDGLRNGEIADQLGMTEKTVKAHVSAVLSGLGVLNRTQATVVARRAGL 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|71907962|ref|YP_285549.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71847583|gb|AAZ47079.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 211

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 9/119 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y    F +A +   L ++    R +              + + F   +   G   +LT
Sbjct: 101 NGYLLKDFVLAELLQALEMVLHGERFLSPK---------IREMSRFSDAEGTSGSGTQLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ E L  ++ G+T+ EIA  LGIS  TV  + + +M +      +G   +A++  +V
Sbjct: 152 ARQTEILRLVASGRTTKEIARDLGISPKTVEFHRSRLMERIGVHDVTGLTRFALQTGVV 210


>gi|311894159|dbj|BAJ26567.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 233

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E +  +++G+T+ EI   L IS  TV  ++A++  K  T+ R    A+A R  
Sbjct: 168 PLTEREWEIVELVAQGRTNAEIGAGLFISAGTVKTHLANVQGKLGTRNRVAIAAWAWRTG 227

Query: 245 IV 246
            +
Sbjct: 228 RI 229


>gi|289642549|ref|ZP_06474692.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507637|gb|EFD28593.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 407

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           I   R   IG +    A        H G D  LT RE E L  +  G T+  IA  L I+
Sbjct: 313 IDLSRYAGIGAMPGDGARPAPVATAHTGGD--LTARESEVLELMVAGATNSVIAETLVIA 370

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
             TV +++  I+RK     RS AIA
Sbjct: 371 EETVKSHVKHILRKLGAVNRSQAIA 395


>gi|284045808|ref|YP_003396148.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950029|gb|ADB52773.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 302

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ELT RE++ L  ++ G+T+ EIA  L IS  TV +++ +++RK     R+ A+A 
Sbjct: 242 ELTARELQVLELLATGRTNAEIATALMISEGTVKHHVKNLLRKLNASNRADAVAR 296


>gi|229154684|ref|ZP_04282799.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342]
 gi|228628632|gb|EEK85344.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342]
          Length = 207

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 17/215 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  + E   +  F ++      E+ L  I     P  ++  + + +    
Sbjct: 1   MDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKK-PDVILMDLNMPKMSGL 57

Query: 98  -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                L +  +   P+      N     +         Y     D        +    +G
Sbjct: 58  ETIEALNK-KQNHTPIIILTTYNEDELMLQGIELGAKGYLLKDTD-RENLFRTLEAAIRG 115

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            I+L+  + E   +  Y+     +  V   ++  LT +E+  L  I+ G  + EIA  +G
Sbjct: 116 EILLQPNIMEK--IVNYKRKEVYADKV---EENNLTEKELFVLKAIARGNKNKEIAFDMG 170

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 171 IAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205


>gi|158334732|ref|YP_001515904.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158304973|gb|ABW26590.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 8/211 (3%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D    +   + +L E       +    D      L   +  D     VR    
Sbjct: 1   MIRLLLADDQALFRQGLASLLELEEDLSVVGQAQDGRDAILLTQTLQPDVILMDVRMPIC 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              +    + QR   +   V  T  E+    T        Y   +   +++   + +L  
Sbjct: 61  DGVEATREIHQRFPWIRILVLTTFDEDEYIWTSLQAGALGYLLKSTPASQLAAAIRMLHD 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               +         ++A  +    K+   H  +   L+ RE++ L  I +GK++ EI+ I
Sbjct: 121 GHFQLGPT--IAPKVIAQLRPPPLKNEQNHLER---LSDRELDVLNLIGQGKSNREISQI 175

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L ++  TV NY++ ++     + R+ A  +A
Sbjct: 176 LHLTEGTVKNYVSQLLGSLGVRDRTQAALWA 206


>gi|157059906|dbj|BAF79713.1| putative two-component system response regulator [Streptomyces
           kasugaensis]
          Length = 215

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 54/164 (32%), Gaps = 11/164 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTEL-FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            DL     +        +   P       V  T   +      ++           R   
Sbjct: 61  MDLQLGTGMDGVATTRRLTAGPGATPHVLVLTTYDTDADITRAIEAGATGYLLKAERPE- 119

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
               LF   +   + R      +A+      +S          LT RE + L  +++G  
Sbjct: 120 ---ELFSAIQAAAQGRTTLSAPVASRVMARMRSP------RPSLTDRERDILAQLAQGLG 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 171 NRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 214


>gi|186681434|ref|YP_001864630.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463886|gb|ACC79687.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 239

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE++ L  I  G  + EIA  L ++  TV  ++  I+ K     R+ A   A+R 
Sbjct: 176 YPLTHREMDVLELIVAGCDNAEIAKRLYLTVGTVKTHVRGILNKLCVADRTQAAVRALRA 235

Query: 244 NIV 246
            +V
Sbjct: 236 GLV 238


>gi|332307927|ref|YP_004435778.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175256|gb|AEE24510.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 916

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E LT + EG ++ EIA  L ++ NTV  ++ ++  K A   R   I  A+   +V
Sbjct: 857 TKRELEILTLVVEGASNTEIADRLFVTANTVKFHMKNLYSKLAVNNRVKLITTAIHLGLV 916


>gi|302558223|ref|ZP_07310565.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus
            Tu4000]
 gi|302475841|gb|EFL38934.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus
            Tu4000]
          Length = 1026

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 52/148 (35%), Gaps = 10/148 (6%)

Query: 104  RPTELFCPVFHTLPENITPPAGMDNRY-----CSLTFDVARIRIGLMLLFPKGRIILRDR 158
            RP +L    F      +   AG D R        L   VA       L      +  R R
Sbjct: 870  RPYDLARVRFRLAEALLASGAGDDERARATELLRLVTAVADHLGAAPLARSAASLAQRAR 929

Query: 159  LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            L  I            +          LT RE + L  ++ G T+  IA  L IS  T +
Sbjct: 930  LALIPA-----TREPAAACADPADALGLTSRERDVLRLVAAGHTNRRIAEELFISPKTAS 984

Query: 219  NYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++++I+ K     R  A A A R  +V
Sbjct: 985  VHVSNILAKLGVSGRGEAAAVAHRVGLV 1012


>gi|299137741|ref|ZP_07030922.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600382|gb|EFI56539.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 212

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  +  GK++ EIA  L I   TV ++++ I+ +     R+ A+   ++  
Sbjct: 149 HLSQREQEVLQLLFAGKSNREIAEELAIKEATVKSHVSVILMRLNVSDRTQAVVEGLKRG 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|297203477|ref|ZP_06920874.1| two-component system regulatory protein [Streptomyces sviceus ATCC
           29083]
 gi|297148424|gb|EFH28981.1| two-component system regulatory protein [Streptomyces sviceus ATCC
           29083]
          Length = 220

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 13/136 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D     L   +  +  G  LL P    + R  + E          
Sbjct: 92  VFEALRAGASGFLLKDTEPADLLQAIEVVARGEALLSP---AVTRTLIGEFAS------- 141

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             +  D       E LT RE E     + G T++EIA  + IS  T   +I+  M K   
Sbjct: 142 --RPPDRSTAPGLECLTRREREVTALAARGLTNEEIAEHMVISPLTAKTHISRAMTKLGA 199

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+  + +A  + +V
Sbjct: 200 RDRAQLVVFAYESGLV 215


>gi|296389853|ref|ZP_06879328.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 685

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L   Q          + ++ +++ RE E L  ++ G ++ +IA  + +S  T+  ++
Sbjct: 598 LADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDIAQAVHLSEATIKWHL 657

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  K   K+R+ A+       ++
Sbjct: 658 HNLFAKLGVKSRTQAVLKGKSLGLL 682


>gi|149187161|ref|ZP_01865459.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148838697|gb|EDL55636.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 227

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 8/178 (4%)

Query: 72  QKLDSIVSSDWPFDLVR--CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           +  D +V  D  F ++    +       Y+ +++        +    P N+     +  +
Sbjct: 47  RSRDDVVERDVRFIIIDYAAIGHGTATHYHEIIESMDNSIKEILLNAPSNLEHAEMLKWQ 106

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELT 187
                F  +     L+  F     IL   LW    L     N ++         +  +LT
Sbjct: 107 NLVGVFYASDTIETLVSGF---ERILAGELWMSRKLVYEYVNFYRRRQCSKTSPYYTKLT 163

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  + +G ++ EIA  L +S NTV  ++ +  +K   K R  A+ + V+NNI
Sbjct: 164 KREQQIIKLLGDGASNTEIADTLFVSENTVKAHLHNAFKKIKVKNRLQALLW-VKNNI 220


>gi|120404725|ref|YP_954554.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957543|gb|ABM14548.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 539

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ LT I+ G T+ ++A  L +S  TV+ ++A+I  K    TR+ A  +A +  +
Sbjct: 475 LTRRELDVLTRIARGATNRQVAEQLHLSDKTVSRHLANIYAKLGVSTRTAAANWAFQQGV 534

Query: 246 V 246
           +
Sbjct: 535 L 535


>gi|83643319|ref|YP_431754.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631362|gb|ABC27329.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 207

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 15/182 (8%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D   E + D +V  D     +  +  +E    +    R   +     H   E ++   
Sbjct: 39  AIDAVAEHQPD-VVMMDVSMPRMNGIDATEYMAQHFPDTR---VLILSMHNNKEYVSQIL 94

Query: 125 -GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y      V  +   +  ++  G  I           +   A +F    +     
Sbjct: 95  HKGAKGYILKDVSVDEMIRAIRTVYEGGTYIS----------SGASAALFSQPQLRGESS 144

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE   L  ++EGK++  IA  L IS  TV  +  +I  K    + +    YA+++
Sbjct: 145 ASLTHREASVLKKVAEGKSNKAIAEELAISVRTVETHRQNIKAKLGLSSTAELTKYAIKH 204

Query: 244 NI 245
            +
Sbjct: 205 GL 206


>gi|326330563|ref|ZP_08196870.1| two-component system, regulatory protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325951638|gb|EGD43671.1| two-component system, regulatory protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 219

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D    ++   V  +  G   L      + R  L E+         
Sbjct: 92  VFGALEAGASGFLLKDADPDAIVAAVRSVAAGHGTLDTS---LTRRVLREV-----VTRR 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +      G +  LT RE++ L  ++EG +++EIA  L +  +TV +++A +M K   K
Sbjct: 144 RTQPVTAARGSEL-LTTRELDILLHLAEGMSNEEIAQALVLEVSTVKSHLARMMPKLGVK 202

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A  +A ++ ++
Sbjct: 203 SRLQAAVWAYQSGLI 217


>gi|299534498|ref|ZP_07047831.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298730126|gb|EFI70668.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 203

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  LT RE + LT ++EGKT+ EIA  L +S  TV NYI++I+ K     R  AIA 
Sbjct: 139 ENPLTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIAR 195


>gi|114769502|ref|ZP_01447128.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550419|gb|EAU53300.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
          Length = 222

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGIS 213
           D L E  +  A    +F   DV   +D   F LT RE   L ++++G ++ E+A  + IS
Sbjct: 116 DELLETAITVASGKMVFPFMDVRELQDDPLFMLTKREKIILQFLADGSSNKELAESMKIS 175

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            NTV  +++++  K   K RS AI++     +
Sbjct: 176 INTVKFHLSNLYEKLGVKNRSQAISFFYSRRL 207


>gi|302869712|ref|YP_003838349.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503806|ref|YP_004082693.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302572571|gb|ADL48773.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410425|gb|ADU08542.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 215

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            GL+      +             LT RE E L  +++G +  +IA  L +S  TV N++
Sbjct: 130 AGLVLGEYRRLAAEPPAPHDDAPRLTERETEVLRLVAKGLSYKQIADRLSLSHRTVQNHV 189

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
            + + K     R     YA+   +
Sbjct: 190 QNTLGKLQLHNRVELTRYAIERGL 213


>gi|302529365|ref|ZP_07281707.1| response regulatory protein [Streptomyces sp. AA4]
 gi|302438260|gb|EFL10076.1| response regulatory protein [Streptomyces sp. AA4]
          Length = 211

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE + L  +++G  + EIA  L IS  TV  ++  I  K    TR+GA+A 
Sbjct: 144 RAPRPALTDRERDILEQLAQGLGNREIARRLFISEATVKTHLGRIYEKLGVDTRAGAVAV 203

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 204 AKEQRLL 210


>gi|257054552|ref|YP_003132384.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256584424|gb|ACU95557.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 229

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y + T     +   +M +   G  +   RL    +L
Sbjct: 92  VFLALSVSDAAEDVIAVIRAGARGYVTKTISSRELVSAVMRVA-DGDAVFSPRLAGF-VL 149

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+              D  LT RE + L  ++ G    EIA  L IS  TV  +++S++
Sbjct: 150 DAFADRPGSEPINDPDLDL-LTPRERDVLRLLARGYAYKEIASELFISIKTVETHVSSVL 208

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RKT    R     +A    +V
Sbjct: 209 RKTQLSNRYELSRWASDRRLV 229


>gi|227327824|ref|ZP_03831848.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
 gi|290454909|emb|CBJ57167.1| homologue of Erwinia virulence regulator [Pectobacterium
           carotovorum]
          Length = 204

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L+ R+ E L  I+ G ++ +I+  L IS  TV +++ SI R+   + R+ A  
Sbjct: 143 KLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|322391432|ref|ZP_08064901.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145515|gb|EFX40907.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 228

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 68/174 (39%), Gaps = 6/174 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           +    P  ++  + +   D       V +   ++   +  T  ++    + +    + Y 
Sbjct: 44  IPHSHPDLILMDIRMPGMDGVLATKEVKEHYPDIKIIILTTFDDDEFIYSALKYGASGYL 103

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   + ++   G +I  D   ++  + +  A    S  V      +L+  E 
Sbjct: 104 LKGASTEELYEAIKVVHQGGAMINPDIASKVFQIFSQMAKSNFSIAVDEDNVKDLSTTEW 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +  I  G+++ EIA  L +S  TV NY+++I+ K   + R+    ++V+  +
Sbjct: 164 RIIQEIGYGESNKEIAAKLFLSEGTVRNYLSTILSKLNLRDRTQLAIWSVQTGV 217


>gi|312200594|ref|YP_004020655.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231930|gb|ADP84785.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 214

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 5/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +A   +      L     +    F           G  + +     
Sbjct: 49  DVVLLDIRMPVLDGLAALREITADPALHGTRVVMVTTFELDEYVFEALRGGASGFVLKDS 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   + ++     ++       +      +A   +           LT RE E + 
Sbjct: 109 EPADLLRAIRVVAAGESLLSPAVTRRV-----IEAFARRPVGPGAPDLDGLTDREREVMG 163

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G ++DEIA  L IS  T   +++ +M K   + R+     A +  +V
Sbjct: 164 LVGHGLSNDEIAARLVISPATARTHVSRVMVKLGARDRAQLAVLANQAGLV 214


>gi|256380943|ref|YP_003104603.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255925246|gb|ACU40757.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 234

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           H  P+ +        R            +  +L   + R+ L   L  +           
Sbjct: 104 HRTPKYVRGALAAGVRGLVPRTAEPAEVVEAILRAHRERVHLDPTLAPLAA--------G 155

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S     G    L+ RE E L  I++G  +  +A  L +S  TV  ++ +I+RK   + R
Sbjct: 156 FSPGADSGTRRALSRREYEVLQLIADGLENQSVADALYVSVETVRTHVKNILRKLRARDR 215

Query: 234 SGAIAYAVRNNIV 246
           + A++ A +  ++
Sbjct: 216 THAVSLAYQAGLL 228


>gi|229526554|ref|ZP_04415958.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229336712|gb|EEO01730.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
          Length = 250

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89
           L++++       +    +     + G    +        +  ++ I  +  DW FD    
Sbjct: 20  LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 78

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141
           +  +   KY  + +   E   P F T   ++          P G       +        
Sbjct: 79  IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 138

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISE 199
            G + L  K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 139 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 198

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 199 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243


>gi|261405105|ref|YP_003241346.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261281568|gb|ACX63539.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 200

 Score = 85.8 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 20/165 (12%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPAGMDNRYCS 132
           +V    P   +  + +   +      +        +    F              N Y  
Sbjct: 42  LVKLHMPDICIMDIEMPIMNGLEAAEEIKGYGCKVMILTTFARPGYFERAVKAGANAYLL 101

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +    RI   + + E                 + G++  LT RE E
Sbjct: 102 KDSPSEELAASIRSIMAGRRIYASELVDE----------------AYSGEENPLTEREKE 145

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            L  I++GK + EIA  L I+  TV NYI+ I+ K     R  AI
Sbjct: 146 VLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEAI 190


>gi|332533470|ref|ZP_08409333.1| nitrate/nitrite response regulator protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037017|gb|EGI73475.1| nitrate/nitrite response regulator protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 218

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 8/162 (4%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  S KD +  + ++   L       L      P   +    S    V        +L  
Sbjct: 51  IETSSKDAWGKLKEQLVNLRIKCDIILFNLDENPELANRALLSGIRGVFYTTDNADVLMK 110

Query: 150 KGRIILRDRLW--------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             R++L D+LW         +  +  +  +          +  +LT RE   ++ +S+G 
Sbjct: 111 GIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSKGS 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + EIA  L IS +TV  ++ S  RKT  + R   +++A +N
Sbjct: 171 KNKEIAEDLSISPHTVKTHLYSAFRKTKCRNRIELLSWAQQN 212


>gi|310821461|ref|YP_003953819.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309394533|gb|ADO71992.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 218

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 12/162 (7%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLL 147
            L+       V +R + +   +  +  +       +    + Y        +IR  +  +
Sbjct: 61  GLNGIQVTQRVKRRVSNVEILILTSFEDEQKVYEAIQAGASGYLVKRVGPEKIRSSIREV 120

Query: 148 FPKG---RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              G     I+  R W       Y  ++           + LT  E E L ++++G ++ 
Sbjct: 121 MEGGTVLEPIIAKRFW------NYFHSLQAKPAGKPENPWGLTPAEFEVLRYVAKGLSNA 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+  ++ + R TV  +++ I RK    +   A+  A++  +V
Sbjct: 175 EVGEVMTLERRTVRTHLSHIYRKMGVNSHVEAVVLALKAGVV 216


>gi|296159892|ref|ZP_06842713.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295889875|gb|EFG69672.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 364

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                 F LT RE E L W+S GKT+ +I  ILG++  TVN ++  +  K   +TR
Sbjct: 295 SALAAQFSLTAREAEVLLWLSRGKTNRDIGDILGMAPRTVNKHLEHVFGKLHVETR 350


>gi|282898244|ref|ZP_06306235.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9]
 gi|281196775|gb|EFA71680.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9]
          Length = 97

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 38/59 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   + +A++  
Sbjct: 12  LSDREMQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRWALQWG 70


>gi|302539071|ref|ZP_07291413.1| two component system response regulator [Streptomyces sp. C]
 gi|302447966|gb|EFL19782.1| two component system response regulator [Streptomyces sp. C]
          Length = 230

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 2/157 (1%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           M   E  +          +         ++I    G   R         +     +    
Sbjct: 74  MDGIETTRRLTGEHPEVAVVVLTTFADDDSILGALGAGARGYLTKNAGRQDITRAIRAAA 133

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208
            G+ +L DR  +  LLA  +               E LT RE E L  I +G  +  IA 
Sbjct: 134 AGQSVL-DREVQARLLATVKTQAPPPGGPLPLPLPEDLTRREREVLALIGQGLPNRGIAE 192

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L IS  TV  +I ++  K   + R+ A+  A+ + +
Sbjct: 193 QLFISEATVKTHINNLFAKAGIRDRADAVRRAIASGL 229


>gi|229070683|ref|ZP_04203919.1| Two-component protein Kinase [Bacillus cereus F65185]
 gi|228712450|gb|EEL64389.1| Two-component protein Kinase [Bacillus cereus F65185]
          Length = 581

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 88/239 (36%), Gaps = 16/239 (6%)

Query: 17  EQRTSFVSHLPTRSDL---LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           E+       +P ++++   L R++ +D        +  L +     +  +V       + 
Sbjct: 349 EEGMLVTCTIPRQTEIKNGLIRLLIVDDQPFVRESLRTLLDRYEDLN--VVGLAEDGNEA 406

Query: 74  LDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPE---NITPPAGMD 127
           +D +     P  ++  + +   D       + Q+   +   +F T  +    +       
Sbjct: 407 ID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRVLIFTTFQDTEQAVESLRNGA 465

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   + +   +   + L+   G +I +    +I      + +  K         +ELT
Sbjct: 466 DGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETPQSKAAVYELT 521

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++G     IA  L +S  TV NY ++   K     +  A+  A+   I+
Sbjct: 522 AREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALEIGII 580


>gi|92115421|ref|YP_575349.1| LuxR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91798511|gb|ABE60650.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 238

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 2/106 (1%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISE 199
           +  L+L+      +L   LW    L     + ++   ++  +    LT RE+E +  +  
Sbjct: 117 QDNLLLICKGIAKLLEGDLWMSRNLMTRLIDFYRRQQLNAYRPVCGLTHRELEIIGLLGT 176

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G ++ EIA  L +S +TV +++ +I RK     R  A+ +A R N+
Sbjct: 177 GASNTEIADQLFVSEHTVKSHLYNIFRKIKVHNRIQAMNWA-RQNL 221


>gi|238025268|ref|YP_002909500.1| Autoinducer-binding domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237879933|gb|ACR32265.1| Autoinducer-binding domain protein [Burkholderia glumae BGR1]
          Length = 273

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 81/239 (33%), Gaps = 29/239 (12%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           V+        +      T   LL  ++P+   + +     A  EY   +  L V      
Sbjct: 36  VIGGGYRLAAAARERGDTPESLLDAVLPIARRLGF-----AYLEYF-FNTSLPVSAP--- 86

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPE--NITP 122
                 +V  ++P    R     E  +   ++ R      P+      F + P+   +  
Sbjct: 87  ----RKLVIGNFPPAWSRREGADEVSEANPIIARCKSSMMPMAWDEASFASHPDFRAMLA 142

Query: 123 PAGMDNRYCSLTFDVAR-------IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
            AG+   +  L  D A         R                 LW   ++ +    M + 
Sbjct: 143 RAGIGGGWSQLVRDGAGNWGVLTVARTACRYAGAMEVEAEAQLLWLAHIVHSRLCQMLRP 202

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             +       LT  E   L W  +GKTS E+A IL +S  TVN ++ +I+ K  T  ++
Sbjct: 203 P-MTGANRVLLTEMEKTILRWTVDGKTSGELAEILQVSARTVNFHVQNILAKMNTCNKT 260


>gi|87123578|ref|ZP_01079429.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86169298|gb|EAQ70554.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 250

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 12/188 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +Q L  +V SD          L  + +    L     +F        +         + Y
Sbjct: 62  QQLLPDLVISDVMMPRCDGYGLLSRMREDERLGGTPVIFLTAKGMTADRTQGYLAGVDDY 121

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAA--------YQANMFKSYDV 178
               FD   +   +  +  +   +L +       ++G +A               ++   
Sbjct: 122 IPKPFDPEELVARVRNVVRRQDRLLAEAARFADADVGQMARQINEIRSMLSGAAAEAVAA 181

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                   T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + 
Sbjct: 182 AEAPQLSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVR 241

Query: 239 YAVRNNIV 246
           +A+++ +V
Sbjct: 242 FALQHRLV 249


>gi|152978046|ref|YP_001343675.1| two component LuxR family transcriptional regulator [Actinobacillus
           succinogenes 130Z]
 gi|150839769|gb|ABR73740.1| two component transcriptional regulator, LuxR family
           [Actinobacillus succinogenes 130Z]
          Length = 209

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 17/200 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           LL+       + +  ++  D  F++V             +   P   +       L    
Sbjct: 8   LLIDDHPLMRRGIKQLIELDEIFEVVGDAGNGNDGISLALQLEPDLIVLDLNMKGLSGLD 67

Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-----LWEIGLLAAYQAN 171
           T  A    G+D R   LT   A+  I  ++       +L+D      L ++  +A  +  
Sbjct: 68  TLKALRNEGVDARIVILTVSDAKNDIFALIDAGADGYLLKDTEPDVLLVQLKRIAGGEVV 127

Query: 172 MFKS-----YDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  S      + H  KD  + LT RE++ L  I+ G ++ +IA  L IS  TV  +I ++
Sbjct: 128 LSDSIKDLLLERHASKDPIYSLTDREMDVLQQIATGLSNKQIAGKLFISEETVKVHIRNL 187

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           +RK    +R  A    + + 
Sbjct: 188 LRKLNVHSRVAATVLYLEHK 207


>gi|332885458|gb|EGK05707.1| hypothetical protein HMPREF9456_02509 [Dysgonomonas mossii DSM
           22836]
          Length = 245

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +L   +   F   ++   K  +LT RE+  L  I EG  S EI+  L IS +TVN +  
Sbjct: 161 HILNVKENTFFPIENLLSSKASDLTTREIAVLQLIKEGLLSKEISEQLFISVHTVNTHRQ 220

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+ K        A+ YA    ++
Sbjct: 221 RILEKLDVNNSMEAVKYASALGLI 244


>gi|315605040|ref|ZP_07880094.1| two component system response regulator [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313319|gb|EFU61382.1| two component system response regulator [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 216

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 9/156 (5%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +E       ++    L   V  +  + +         Y + +     +   +  +     
Sbjct: 68  AEVASSCRDVEGLNFLALSVSDSAEDVVQVIRAGARGYVTKSISTPDLVEAIGRVAAGDA 127

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVIL 210
                       LA +  + F + +V     +   L+ RE E +  I+ G T  E+A  L
Sbjct: 128 AFSP-------RLAGFVLDAFGTGEVSAADTELDLLSAREQEVMRLIARGYTYKEVAHDL 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  ++++++RK     R+    +A++ +IV
Sbjct: 181 FISIKTVETHVSAVLRKLQLSNRNELTRWAMQRHIV 216


>gi|302524105|ref|ZP_07276447.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302433000|gb|EFL04816.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 222

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y + T     +   ++ +   G  +   RL   G +
Sbjct: 85  VFLALSVSDAAEDVIAVIRAGARGYVTKTISSKELVRAVVRVA-DGDAVFSPRL--AGFV 141

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               A+   S  ++  +   LT RE + L  ++ G    EIA  L IS  TV  +++S++
Sbjct: 142 LDAFADRPGSAPINDPELDLLTPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVL 201

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RKT    R     +A    +V
Sbjct: 202 RKTQLSNRYELSRWASDRRLV 222


>gi|284992805|ref|YP_003411359.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066050|gb|ADB76988.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 218

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 4/150 (2%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             L     L   V     + I         Y + +     +R  +  +   G ++   RL
Sbjct: 70  AELPSVRWLALSVSDAAEDVIAVIRAGARGYVTKSISGPDLRDAVARVA-DGDVVFSPRL 128

Query: 160 WEIGL--LAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNT 216
               L   AA   +  +  D       +L + RE E +  ++ G T  EI   L IS  T
Sbjct: 129 AGFVLDAFAATTPSAPQPEDPATDPGLDLLSAREREVMQLLARGYTYREIGSRLFISVKT 188

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V ++ ++++RK     R+    +A  N ++
Sbjct: 189 VESHASNVLRKLQLSNRNELTRWAATNRLL 218


>gi|229820935|ref|YP_002882461.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566848|gb|ACQ80699.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 220

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+ I+ G ++ EIA  L ++  TV  ++++I+ K   + R  A+ ++    +
Sbjct: 156 LTSREREVLSLIARGLSNAEIAGRLFVTEGTVKGHVSAILAKLGLRDRVQAVIFSYECGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|261418524|ref|YP_003252206.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765338|ref|YP_004130839.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261374981|gb|ACX77724.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317110204|gb|ADU92696.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 221

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 7/155 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPT--ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   ++  +    + ++     L    F      +         Y     D  RIR  +
Sbjct: 65  VRMPNMNGVEATKLLCEQTKTKPLILTTFDDDEYILDAIQYGAKGYFLKNTDPERIREAI 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    + +I      +A      D         T RE++ +  I++G ++ 
Sbjct: 125 KAVYHGQVVMQEIVMDKIKSNLKEEAEAAPKIDKSL-----FTERELDIMALIAKGLSNK 179

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EIA  L +S  TV NYI SI+ KT  + R+    Y
Sbjct: 180 EIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214


>gi|153825393|ref|ZP_01978060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|255746365|ref|ZP_05420312.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262158280|ref|ZP_06029397.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|262169155|ref|ZP_06036848.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|262192074|ref|ZP_06050237.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
 gi|149740939|gb|EDM55016.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|255736119|gb|EET91517.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262022436|gb|EEY41144.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|262029962|gb|EEY48609.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|262032056|gb|EEY50631.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
 gi|327485870|gb|AEA80276.1| transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4]
          Length = 239

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89
           L++++       +    +     + G    +        +  ++ I  +  DW FD    
Sbjct: 9   LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 67

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141
           +  +   KY  + +   E   P F T   ++          P G       +        
Sbjct: 68  IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 127

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISE 199
            G + L  K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 128 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 187

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 188 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 232


>gi|325924567|ref|ZP_08186081.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325544945|gb|EGD16285.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 210

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 74/218 (33%), Gaps = 14/218 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS--SDWPFDLVRCM 90
             R+   D  +     + AL +  G    ++   D  Q   LD++V    D     +R  
Sbjct: 3   ARRIALADDQILVRAGLRALLQQQGVE--VVCEADDGQ-SLLDALVINTVDVVLSDIRMP 59

Query: 91  ALSEKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            L        +  R   T +         + +        +   L           +   
Sbjct: 60  GLDGIQALQQLRDRGDRTPVLLLTTFDDSDLLLRATEAGAQGFLLKDAAPEDLREAIERV 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G  +L+        ++         +          + REV  L  ++ G ++ EIA 
Sbjct: 120 ASGETLLQP-------VSTDPVRARYQFRDQQPPRETFSEREVAILRLLAGGYSNKEIAR 172

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 173 TLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210


>gi|320162423|ref|YP_004175648.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996277|dbj|BAJ65048.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 220

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 5/173 (2%)

Query: 76  SIVSSDWPFDLVRCMAL---SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            ++    P  ++  + +   S  +    ++QR  +    +  +  ++      +      
Sbjct: 43  RVIEETQPQIVLMDIRMPGESGIEATRQIVQRFPQTRVIILTSYSDDELVMRAIHAGASG 102

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                A   + L  +    R            L  +   M +  + +  +D  L+ RE+ 
Sbjct: 103 YVLKQADNDVLLDAIQTVARGESLLDPATTTRLLHFVREMERKAEQNAFRD--LSERELS 160

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  +++GKT+ EI   L +S  TV N+++ I+ K     R     YAV ++I
Sbjct: 161 VLAELAKGKTNAEIGRTLHLSEKTVRNHVSVILEKLHLSNRVELATYAVEHHI 213


>gi|307327309|ref|ZP_07606496.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886988|gb|EFN17987.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 212

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 19/196 (9%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +       DL  E+    +   D     +R   L        ++ R       +
Sbjct: 31  IEIVGEAGDGRAALDLV-ERYDPDVALVD-----LRMPVLDGVATTTEIVARYPRTRVLI 84

Query: 113 FHTLPENITPPAGMDNRYC--SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
             T   +     G++       L        +  +    +G  +L  R+ E        A
Sbjct: 85  LTTYDTDTEIERGVEAGAIGYLLKDTTREQLVDAIHAAARGETVLAPRVAEK-----LVA 139

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M +           LT RE E L  +++G T+ EI   L I+  TV  ++  +  K   
Sbjct: 140 RMRRPV------QEPLTDRETEVLGAVADGLTNAEIGRRLVIAEATVKTHLLRLFAKLDV 193

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+  A+   ++
Sbjct: 194 NDRTRAVVVAMERGLL 209


>gi|296130400|ref|YP_003637650.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022215|gb|ADG75451.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 229

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 80/231 (34%), Gaps = 14/231 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
               +     P R+     ++ +D      M + ++ +   AS  +    +     +   
Sbjct: 8   PTAVTLSDRDPDRAPDRVSVVVVDDNAVIRMGLRSIVD---ASTTMRWVGEAADGVEAVQ 64

Query: 77  IVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPE--NITPPAGMDNRYCS 132
           +V    P  ++  + +  +D     + ++  + +    +   PE       AG +     
Sbjct: 65  VVREKVPDVVLLDVRMPRRDGVQVASEVRAWSRVLMLTYSDAPEVVRAALDAGANGYLVH 124

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
             F    +   ++ +     ++           A     +  +       D  L+ R+ E
Sbjct: 125 GQFTGPDLERAVLAVASGAMLLSAPA-------AEALRRVPTAAPPGPRSDLGLSERQQE 177

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +  ++ G+T+  IA  L +S  TV N++  I  +    TR+ A++  +  
Sbjct: 178 IMELVAAGRTNGAIAQELYLSEKTVKNHVNHIFARLGVATRAEAVSVWLHR 228


>gi|257791938|ref|YP_003182544.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257475835|gb|ACV56155.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 258

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E    I+EG ++ +I + L IS NTV  ++  I +K     R   +A   R 
Sbjct: 194 LTAREQEIAALIAEGLSNQQIGLRLFISENTVKKHVKGIFQKMGVSNRHQLMAELYRT 251


>gi|116696371|ref|YP_841947.1| response regulator [Ralstonia eutropha H16]
 gi|113530870|emb|CAJ97217.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 239

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 82/226 (36%), Gaps = 15/226 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHF---LLVRWDLFQEQKLD-SIVSSDWP- 83
           R  LL               +  L    GA  F   +     L  +   D ++V +  P 
Sbjct: 20  RGQLLLVGHESPMLTRLCGILTVLDYAAGALSFAGTIAQACALVDQGPFDMALVDTSLPD 79

Query: 84  ---FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L+RC+     D    V+  P      +   L    T     +     LT  +   
Sbjct: 80  GSGIELIRCLRERAPDLPIVVIASPG-TDTEIVGALIAGATGYLLKERDDIELTVCLRGA 138

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             G   + P     +  RL  +  L    A               L+ RE E L +I++G
Sbjct: 139 LRGGTPIDPS----IAKRL--LTTLVPKAAPAETRLSPTGSVKPLLSARETEILVFINKG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+ EIA  L +SR T+ +++ +I +K A KTR+ AI  A    ++
Sbjct: 193 STNREIADALSLSRLTIESHVKNIYKKLAVKTRTQAIFEARAYGVL 238


>gi|66045285|ref|YP_235126.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63255992|gb|AAY37088.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 87

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R 
Sbjct: 22  VQLTVKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 81

Query: 244 NIV 246
            ++
Sbjct: 82  GVI 84


>gi|284045278|ref|YP_003395618.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949499|gb|ADB52243.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 519

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G ++ E+A  L I+  T  N++  +  K    +R+ A  YA+R+ +
Sbjct: 458 LTARELEVLVLVARGASAREVAGELVIAEKTARNHVECVYGKLGVSSRAEATLYAMRHGL 517

Query: 246 V 246
           V
Sbjct: 518 V 518


>gi|226310881|ref|YP_002770775.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226093829|dbj|BAH42271.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 602

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 86/244 (35%), Gaps = 13/244 (5%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRW 66
             E    T  V  +   +D + R++ +D        + ++ E       VG +       
Sbjct: 362 RGEGTLVTCLVPRMVESADEIIRLVIVDDHSFIRESLRSILEGQRDLRVVGLAEDGAQAV 421

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +L +E + D ++      ++     ++   +          L    F    +        
Sbjct: 422 ELCEELEPDLVLMD---LEMPNMDGITATKRIKEKWPGIRILVLSTFQDTEKAKEIMRSG 478

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKD- 183
            + Y   + +   +   + L+   G +I +D   ++  G     Q ++  +       + 
Sbjct: 479 ADGYLLKSIESRELAETIRLVHRGGTMIAQDLFHKMLDGQPVNGQEDLLVAPKQSEKDEN 538

Query: 184 -FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + LT RE E L  +++G     IA  L +S  TV NY +++  K   + R  A+     
Sbjct: 539 AYGLTKREQEILQMLAQGMRYKTIASKLYLSDGTVRNYASALYDKLGVRNRDDAVQKGKM 598

Query: 243 NNIV 246
             +V
Sbjct: 599 EGLV 602


>gi|223934800|ref|ZP_03626720.1| transcriptional regulator, LuxR family [bacterium Ellin514]
 gi|223896755|gb|EEF63196.1| transcriptional regulator, LuxR family [bacterium Ellin514]
          Length = 122

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 37/78 (47%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A      F+    H  +  EL+ RE E L  ++ G    EIA  L IS  TVN YI  +
Sbjct: 33  IARRVVQSFQQTRPHASEADELSNREQEVLDLLARGYLYKEIAENLNISVATVNTYIRRV 92

Query: 225 MRKTATKTRSGAIAYAVR 242
             K   ++R+ A+A   R
Sbjct: 93  YEKLHVRSRAQAVAKYTR 110


>gi|218291120|ref|ZP_03495135.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|258511821|ref|YP_003185255.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218238931|gb|EED06139.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|257478547|gb|ACV58866.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 75

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    + + KT+ EIA  L +S  TV N+I+++M+K   K RS A+   VR   
Sbjct: 13  LTNREREVFELLVQDKTTKEIASQLFVSEKTVRNHISNVMKKLNVKGRSQAVVELVRLGE 72

Query: 246 V 246
           +
Sbjct: 73  I 73


>gi|254390125|ref|ZP_05005345.1| two component response regulator MppU [Streptomyces clavuligerus
           ATCC 27064]
 gi|294817119|ref|ZP_06775761.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326445989|ref|ZP_08220723.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703832|gb|EDY49644.1| two component response regulator MppU [Streptomyces clavuligerus
           ATCC 27064]
 gi|294321934|gb|EFG04069.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 209

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 13/163 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPT------ELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  +V  + +   D    V +R         +   +  T  ++      + +  C   F 
Sbjct: 49  PDLVVADIRMPGVDG-LEVTRRLAGPDADDPVRVLIVTTFDQDDHVRTALRDGACG--FL 105

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           + R   GL+ +      +  D L    L A          D        LT RE E    
Sbjct: 106 LKRSGPGLL-IEGVRAALAGDVLISPQLTARLLQRATAPDDRRTS---PLTAREEEIARL 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +++G T+ EI   L IS  T   ++A++  K   + R G  A+
Sbjct: 162 VADGLTNAEIGEALVISPGTAKTHVANVQTKLGARNRVGIAAW 204


>gi|149915179|ref|ZP_01903707.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b]
 gi|149810900|gb|EDM70739.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b]
          Length = 201

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 11/171 (6%)

Query: 77  IVSSDWPFDLVR-CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           I +   P DLV    ++   D    + +      CPV           A    R  +  F
Sbjct: 41  IETEQGPHDLVLLDYSMPGMDTLAGLARMKEHAGCPVAILSGTASADVARRALRAGAAGF 100

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + +     ML+     ++       I  LA  +A+           D  LT RE++ L 
Sbjct: 101 -LPKTLGPDMLIAAVHEMLGGGIYRPIEFLAEAEASPL---------DVALTPRELDVLK 150

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EGK + EIA  L I   TV  ++ ++ RK   + R+ A        +V
Sbjct: 151 GLTEGKANKEIARELDIQEVTVKLHVKTLSRKLQARNRTHAAMLGRDLGLV 201


>gi|325923039|ref|ZP_08184737.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546480|gb|EGD17636.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 235

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 12/138 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLF-----PKGRIILRDRLWEIGLLA-AYQANMF 173
           + PP   D R   +         G++ +      P         L    LL  A  A   
Sbjct: 96  LMPPRPADMREAKVPIHALGTTHGMLCVAWNDSRPAPGNDDVQALQAFALLLPAMVAEPA 155

Query: 174 KSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           K       K  +      L+ RE + L+ +  G T+  +A  LGIS  TV  ++  I++K
Sbjct: 156 KPLATRRRKPVQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQK 215

Query: 228 TATKTRSGAIAYAVRNNI 245
              K R+ A  YAV   +
Sbjct: 216 LEVKDRTQAAVYAVHAGL 233


>gi|309779367|ref|ZP_07674129.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp.
           5_7_47FAA]
 gi|308921925|gb|EFP67560.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp.
           5_7_47FAA]
          Length = 250

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 15/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R+ LL ++  L    +    +      +G  +            + +++  S +P     
Sbjct: 16  RAALLHQLNGLRDADAVIRSLQPAVALLGFDYCAYALRAAIPITRFNTLCWSTYPEPWCE 75

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPE-------NITPPAGMDNRYCSLTFDVARIR 141
              +        VLQ       PV  +                G+++ +     D     
Sbjct: 76  HYRVHGYLAIDPVLQFGQRCVKPVLWSGIATADARFWADARQHGLNHGWSHTIRD-HTGI 134

Query: 142 IGLMLLFPKGRIILRDRLW--EIGLL-----AAYQANMFKSYDVHWGKDFELTGREVECL 194
            G   L  +   I  D L   E  ++     A    +   +  V       L   E + L
Sbjct: 135 FGTFSLVRRATPITEDELAVSEPEMIWLSQRAHGSISTLMAEKVLPDAATRLKEVERQTL 194

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGKT+ E+A IL ++   VN +I + + K     ++ A+  A    ++
Sbjct: 195 HWTAEGKTAAEVAAILEMTERNVNFHIRNAVTKLNAANKTHAVVKAALLGLI 246


>gi|228919844|ref|ZP_04083201.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839798|gb|EEM85082.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 207

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 17/215 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  + E   +  F ++      E+ L  I     P  ++  + + +    
Sbjct: 1   MDDHFVVREGLKLIIET--SDSFQIIGEAANGEEALSFIEKKK-PDVILMDLNMPKMSGL 57

Query: 98  -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                L +  +   P+      N     +         Y     D        +    +G
Sbjct: 58  ETIEALNK-KQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 115

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            I+L+  + E   +  Y+     +  V   ++  LT +E+  L  I+ G  + EIA  +G
Sbjct: 116 EILLQPNIMEK--IVNYKRKEVYADKV---EENNLTEKELFVLKAIARGNKNKEIAFDMG 170

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 171 IAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205


>gi|223934123|ref|ZP_03626068.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|302024316|ref|ZP_07249527.1| response regulator protein [Streptococcus suis 05HAS68]
 gi|330833306|ref|YP_004402131.1| two component LuxR family transcriptional regulator [Streptococcus
           suis ST3]
 gi|223897209|gb|EEF63625.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|329307529|gb|AEB81945.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis ST3]
          Length = 200

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  D+   +   LT  E + L  ++EG ++ EIA  L +S  TV NY+ S
Sbjct: 117 VLAGRKEYSPELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTS 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+  A    
Sbjct: 177 ILSKLGAENRTAAVRIAQEKG 197


>gi|218440594|ref|YP_002378923.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218173322|gb|ACK72055.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424]
          Length = 90

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 39/67 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   +
Sbjct: 4   SKFETPASLSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELV 63

Query: 238 AYAVRNN 244
            +A++  
Sbjct: 64  RWALQWG 70


>gi|325916868|ref|ZP_08179116.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536913|gb|EGD08661.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 235

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           LL A  A   K       K  +      L+ RE + L+ +  G T+  +A  LGIS  TV
Sbjct: 146 LLPAMVAEPAKPIATRRRKPMQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTV 205

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++  I++K   K R+ A  YAV+  +
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQAGL 233


>gi|312868682|ref|ZP_07728875.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3]
 gi|311095796|gb|EFQ54047.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3]
          Length = 210

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           DV+      L+ RE E    ++ G ++ EI+  L IS  TV  + A+I RK    +R   
Sbjct: 139 DVNLKGYSVLSKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHLHSRVEL 198

Query: 237 IAYAVRNNIV 246
           + YA+ ++++
Sbjct: 199 VRYAIHHHLI 208


>gi|326775192|ref|ZP_08234457.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326655525|gb|EGE40371.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 230

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L+   + A  +  + ++ D        +T RE E L  ++EG +S EIA +L IS  TV 
Sbjct: 141 LYPGAVTALIRNFLDRAKDGEDLPARAITEREEEILKLVAEGHSSKEIAEMLVISVKTVE 200

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + A++++K   + R     YA+R  ++
Sbjct: 201 RHRANLLQKLGLRDRLELTRYAIRAGLI 228


>gi|295695307|ref|YP_003588545.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
 gi|295410909|gb|ADG05401.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
          Length = 75

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I+++M+K   K RS A+   VR  
Sbjct: 13  LTAREREVFELLVQDKTTREIAEQLYISEKTVRNHISNVMKKLNVKGRSQAVVELVRMG 71


>gi|315505622|ref|YP_004084509.1| transcriptional regulator, luxr family [Micromonospora sp. L5]
 gi|315412241|gb|ADU10358.1| transcriptional regulator, LuxR family [Micromonospora sp. L5]
          Length = 979

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++EG T+ EI   L IS  T+  +++ I  K   +TR  A A  +RN 
Sbjct: 919 LTAREREVLAAVAEGLTNREIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRNG 977


>gi|269795459|ref|YP_003314914.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097644|gb|ACZ22080.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 222

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 15/138 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL-FPKGRIILRDRLWEIGL--LAAY 168
           VF  L    +     D     +   V ++  G   +     R ILR+ +    L  +AA+
Sbjct: 92  VFGALEAGASGFLLKDADPDVIVHAVRQVAAGHGTIDQTLTRRILREFVDRRSLRPVAAH 151

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +A+              LT RE E L  +++G ++DEIA  L +  +TV +++A ++ K 
Sbjct: 152 RADGL------------LTEREREILLLLAQGMSNDEIARELVVEVSTVKSHLARMLPKL 199

Query: 229 ATKTRSGAIAYAVRNNIV 246
             ++R  A+ +A +N +V
Sbjct: 200 GVRSRLQAVVWAYQNRVV 217


>gi|302874384|ref|YP_003843017.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307691015|ref|ZP_07633461.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302577241|gb|ADL51253.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 204

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---------YQANMFK 174
            G+  ++  L+  +++              IL++   E  L A          Y + + K
Sbjct: 71  LGLGTKFILLSSSISQEDFKRASKLGVDGYILKEAFVEDILYAISIISRGMKYYYSEVLK 130

Query: 175 SYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                       +LT RE + LT I +G +++EIA +L IS +TV  ++++I+ K     
Sbjct: 131 QNGQLDQNSMINQLTEREKDVLTEIRKGLSNEEIAKVLYISEHTVKKHVSNILSKFNLSN 190

Query: 233 RSGAIAYAVRNNI 245
           R+  +A+ V N +
Sbjct: 191 RTQ-VAFMVNNKL 202


>gi|240949973|ref|ZP_04754289.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           NM305]
 gi|240295573|gb|EER46299.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           NM305]
          Length = 209

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 19/154 (12%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +   E D    VL    E    +   +   +      D+    L  ++ +   G 
Sbjct: 67  DTLRSLRAKEVDARIVVLTVSDEQ-SDIVALMDAGVDGYLLKDSDTAELVENIQKAARGE 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           M+L    R  L +   +   LA                   LT RE + L WI+ G ++ 
Sbjct: 126 MVLSDAVRKHLLEHRPQADPLAT------------------LTDRERDVLQWIATGMSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +IA  L IS  TV  +I +++RK    +R  A  
Sbjct: 168 QIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201


>gi|239990355|ref|ZP_04711019.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447364|ref|ZP_06586754.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350311|gb|EFE77215.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 315

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P       + L ++  +    +    +      + + L+ REVE +  I+ G ++ +IA 
Sbjct: 212 PAHTAEPSESLSQLQPVVGESSVSGGTVPTPNRQQYGLSSREVEVMDLIASGMSNQQIAA 271

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              IS  TV N+I  I  K  + TRS AIA+
Sbjct: 272 TCFISEKTVKNHINRIFTKLHSATRSEAIAH 302


>gi|258653619|ref|YP_003202775.1| LuxR family ATP-dependent transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556844|gb|ACV79786.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Nakamurella multipartita DSM 44233]
          Length = 901

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A + ++ D        LT RE++ L  +  G+T+ +IA  L ++ NTV  Y+ +I  K 
Sbjct: 823 AALVAQAGDDPETPSSGLTARELDILRMVGSGRTNQQIATSLTVTVNTVKWYLKNIYTKL 882

Query: 229 ATKTRSGAIAYAVRNNI 245
               R+ A A A R  +
Sbjct: 883 GATNRTEATAIARREGL 899


>gi|213964996|ref|ZP_03393195.1| two component transcriptional regulator, LuxR family
           [Corynebacterium amycolatum SK46]
 gi|213952532|gb|EEB63915.1| two component transcriptional regulator, LuxR family
           [Corynebacterium amycolatum SK46]
          Length = 235

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 10/172 (5%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +A             P  L    F      +         +     +   +   +
Sbjct: 64  EATRQIAQGAPSGGAARASSPKVLVLTTFREEDLVLGALEAGAAGFLLKDSNPRELLSAI 123

Query: 145 MLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYDVHWG------KDFELTGREVECL 194
           M +     +I        L  +   A +      +   H           + T RE E L
Sbjct: 124 MRIHRGEGVIDPKVTPMVLRHVSPRAPHSGRPASASSTHGAGSDPTDAGTQFTPREQEIL 183

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + +G ++DEIA  L ++  TV  ++ +++ KT +++R   + +A +N ++
Sbjct: 184 NLVCQGLSNDEIARRLVVATTTVKTHVKALLTKTGSRSRVDLVIWAAKNGLL 235


>gi|182434678|ref|YP_001822397.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463194|dbj|BAG17714.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 232

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L+   + A  +  + ++ D        +T RE E L  ++EG +S EIA +L IS  TV 
Sbjct: 143 LYPGAVTALIRNFLDRAKDGEDLPARAITEREEEILKLVAEGHSSKEIAEMLVISVKTVE 202

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + A++++K   + R     YA+R  ++
Sbjct: 203 RHRANLLQKLGLRDRLELTRYAIRAGLI 230


>gi|297584895|ref|YP_003700675.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297143352|gb|ADI00110.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 219

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 18/224 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D    +   +  +     A + ++   D   E  ++    ++ P  ++  ++
Sbjct: 1   MKTRIMLVDDHPVFRSGLKHILC-TEADYHVIAEAD-DGESAIEMAAEAN-PDIIIMDIS 57

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL-----ML 146
           +   D     + R  +   P    L          D  +   + D       L       
Sbjct: 58  MPGLDGI--EVTREIKRKIPDIRIL----MLTMYADEAFLKESLDAGASGYVLKRAVDTE 111

Query: 147 LFPKGRIILRDRLWEIGLL--AAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKT 202
           L    ++++    +    L    Y AN  +   V     +  EL+ RE E L +I+ G T
Sbjct: 112 LVHAVKLVMNGEHYIYPTLIPKLYHANQPQQDAVSPDSNQAVELSQREQEVLKYIALGYT 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             EI+  L IS  TV+ Y   +M K  +K +S  + YA+++NI+
Sbjct: 172 QKEISTELFISIKTVDTYKKRVMEKIGSKKKSALVRYALKHNII 215


>gi|169349619|ref|ZP_02866557.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552]
 gi|169293694|gb|EDS75827.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552]
          Length = 227

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 66/165 (40%), Gaps = 6/165 (3%)

Query: 86  LVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVAR 139
           ++  + +   D       V ++       +  T  ++    + +    + Y      +  
Sbjct: 54  ILMDIRMPRMDGVVCTKAVKEQYPNTKIIILTTFDDDDFVFSALKYGASGYLLKGVGMDE 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   ++ ++  G +I  D   ++  + +  +    S  V      E++  E + +  +  
Sbjct: 114 LYQSILTVYRGGGMINPDIATKVFGMFSKMSQNNYSIQVDETNIDEISKPEWKVIQQVGY 173

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G ++ EIA  L +S  TV NY++SI+ K   + R+    +AV+  
Sbjct: 174 GFSNKEIAQKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQTG 218


>gi|86740192|ref|YP_480592.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86567054|gb|ABD10863.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 231

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +            R  +L   V ++  G  LL P     +  RL E           
Sbjct: 113 FTAIMAGAAGYVLKQIRGTALVDAVRQVAAGKSLLDPAVTPRVLVRLRE----------- 161

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             + D        LT +E   L  I+EG T+ +IA  + ++  TV NY++S++ K   ++
Sbjct: 162 GPAEDERLS---GLTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLSKLGLES 218

Query: 233 RSGAIAYAVRNN 244
           R+ A  +A R N
Sbjct: 219 RTQAAVFATRLN 230


>gi|15967032|ref|NP_387385.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15076305|emb|CAC47858.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
          Length = 184

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 8/130 (6%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSY 176
            G+ + Y        R  +G + +  +   +    L     +A           +     
Sbjct: 55  HGLFDGYI-FPVHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMA 113

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++    + ++T RE+E L ++++G TS++I  +L IS +TV+ Y+  I  K   K R   
Sbjct: 114 ELVSRVEVQMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHV 173

Query: 237 IAYAVRNNIV 246
           +A A R  ++
Sbjct: 174 VAIAFRLGLI 183


>gi|163800211|ref|ZP_02194112.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
 gi|159175654|gb|EDP60448.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
          Length = 222

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEG 200
           G+  L      +L+  +W     +       + +     K     LT RE + +T +S G
Sbjct: 112 GISKLQAGIGKVLQGDMWFSRKFSQQYITHLRRHGRPTSKPLREILTKREQQIITLLSSG 171

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A  N
Sbjct: 172 ASNQQIADQLLVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214


>gi|91776067|ref|YP_545823.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91710054|gb|ABE49982.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 213

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 18/182 (9%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PA 124
           L+QE + D +V        +    +   +    +  +       V     +++ P     
Sbjct: 45  LYQEHRPDVVVMD------ITMPGIGGLEAIDRIRAKDEHARILVLSAHEDSVHPKRVLN 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   +  +      +  +           Q    +          
Sbjct: 99  AGAMGYLTKRSAAEELIKAIHTVAGGKMYLEAN---------VAQQMAIQQISGQQNPVD 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E    +++GKT++EIA IL +S  TV  ++ +I +K      +     A+R+ 
Sbjct: 150 VLSDREFEVFMALAKGKTTNEIADILSLSPRTVGTHLYNIKQKLNASNSAEIALIAMRSG 209

Query: 245 IV 246
           ++
Sbjct: 210 LI 211


>gi|23100305|ref|NP_693772.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778537|dbj|BAC14806.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 199

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 42/77 (54%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++A  +    +  D+ + +   LT RE + L  I++GKT+ EIA  L ++  TV NY++
Sbjct: 115 AIMAGRKVYAPELIDMAYEEGNPLTTREEQVLKLIADGKTTKEIAGQLYLTNGTVRNYVS 174

Query: 223 SIMRKTATKTRSGAIAY 239
           +IM K     R  AI+ 
Sbjct: 175 TIMDKLNVSNRIEAISR 191


>gi|158315636|ref|YP_001508144.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111041|gb|ABW13238.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 249

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 11/133 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D     L   V     G  L+ P              LLA +  +
Sbjct: 113 VYAALRAGARGFLLKDAGPDLLAQAVHAAACGDALIAPN---------VTARLLATFAGS 163

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   LT RE + L  ++ G+T+ EIA  L IS +TV  +IAS+M K   +
Sbjct: 164 GPAPVPAQPVE--ALTDREEQVLATVAGGRTNSEIAADLHISLSTVKTHIASLMAKLGAR 221

Query: 232 TRSGAIAYAVRNN 244
            R     +A +  
Sbjct: 222 NRVEIALWAYQTG 234


>gi|319651764|ref|ZP_08005890.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2]
 gi|317396583|gb|EFV77295.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2]
          Length = 74

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTREIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|293375961|ref|ZP_06622221.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325841957|ref|ZP_08167534.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|292645398|gb|EFF63448.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325489790|gb|EGC92145.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 214

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             +     D+ +  +   +    +G ++  P+             LL     ++    D 
Sbjct: 98  GASGYLLKDSSHEVIYEGIKSAIMGNVIFHPE---------VATQLLNTQTTSIK--SDA 146

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + + + L+ +E+  +  I+ G T+ EIA  L +S  T+ N+I +I+ K   + R+    
Sbjct: 147 QFYEQYRLSEKELMIIREIATGLTNKEIAAKLFLSEGTIKNHITNILFKLELRDRTQIAI 206

Query: 239 YAVRNNI 245
           +A +N +
Sbjct: 207 FAFKNGL 213


>gi|289624509|ref|ZP_06457463.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330869296|gb|EGH04005.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 261

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY- 130
           + +  ++ S++P   ++    S       +++       P F     N       D+   
Sbjct: 52  RNVKPVILSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAAQGVETDDFLK 111

Query: 131 --------CSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGL-----LAAYQANMFK 174
                      TF   D + +   L L   + +     R+ E        L  +   + K
Sbjct: 112 RSAKYQLSSGATFTLHDASGLFAALSLCNARQQKDFDQRIREKAADIQMSLIRFHDRLIK 171

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   H         +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   
Sbjct: 172 TRAPHELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEV 231

Query: 231 KTRSGA 236
           +T   A
Sbjct: 232 RTAKQA 237


>gi|302867979|ref|YP_003836616.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|302570838|gb|ADL47040.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
          Length = 979

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++EG T+ EI   L IS  T+  +++ I  K   +TR  A A  +RN 
Sbjct: 919 LTAREREVLAAVAEGLTNREIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRNG 977


>gi|113477455|ref|YP_723516.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168503|gb|ABG53043.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 230

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 86/212 (40%), Gaps = 21/212 (9%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTE 107
            +++Y+  S +L+V+ +  Q+     IV    P  ++  +A+ + D Y     V  RP+ 
Sbjct: 17  CISDYLEVSGYLVVKAEDGQQAFD--IVEKSEPHLIITDIAMPKMDGYELVKRVRARPSF 74

Query: 108 LFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
              PV          E +       + Y    F++  +   +  L  +  +I +      
Sbjct: 75  RLLPVIFLTAHISTQERVKGYQLGCDIYLPKPFELVELGAVVRSLLDRYALIAKASPRSN 134

Query: 163 GLLAAYQA----NMFKSYDVHW-------GKDFELTGREVECLTWISEGKTSDEIAVILG 211
            L    Q+    N  +S D               LT RE + L+ +  G ++ +I   L 
Sbjct: 135 YLPINSQSLVTENPSRSDDSESISQSIIVNSQISLTSREKQVLSLLLNGLSNVQIGDRLH 194

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +S  T+  Y++ ++RKT TK R+  + + + N
Sbjct: 195 LSPRTIEKYVSGLLRKTDTKNRAELVRFTMEN 226


>gi|320012915|gb|ADW07765.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 204

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 12/168 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ----------RPTELFCPVFHTLPENITPPAGMDNRYCS 132
           P  L+  + +  +D  + +++          R   L    F          A   + +  
Sbjct: 34  PDVLLMDIRMPRRDGLWALVELGRRSLLGPGRSRVLMLTTFDLDAYVDDALAAGASGFLL 93

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +         +       I  +  +     +  D    +  +LT RE++
Sbjct: 94  KNSSYEELTGAVRAAVAGHSALSPAVTQRI--IEGHLRGRRRPSDQDLARLRDLTEREID 151

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L  I +G ++ EIA  L +S +TV+ +++ ++ KT  ++R+ A   A
Sbjct: 152 VLRLIRDGLSNAEIAERLVVSLHTVSTHVSRVLTKTGCQSRAQAAVLA 199


>gi|239945707|ref|ZP_04697644.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239992177|ref|ZP_04712841.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291449166|ref|ZP_06588556.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291352113|gb|EFE79017.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 232

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L+   + A  +  + ++ D        +T RE E L  ++EG +S EIA +L IS  TV 
Sbjct: 143 LYPGAVTALIRNFLDRAKDGEDLPARAITEREEEILKLVAEGHSSKEIAELLVISVKTVE 202

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + A++++K   + R     YA+R  ++
Sbjct: 203 RHRANLLQKLGLRDRLELTRYAIRAGLI 230


>gi|229505968|ref|ZP_04395477.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286]
 gi|229605500|ref|YP_002876204.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
 gi|229356319|gb|EEO21237.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286]
 gi|229371986|gb|ACQ62408.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
          Length = 250

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89
           L++++       +    +     + G    +        +  ++ I  +  DW FD    
Sbjct: 20  LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 78

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141
           +  +   KY  + +   E   P F T   ++          P G       +        
Sbjct: 79  IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 138

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISE 199
            G + L  K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 139 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 198

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 199 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243


>gi|172037420|ref|YP_001803921.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698874|gb|ACB51855.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 244

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           ++ + +   + A  A+  K  D        LT +E+E L  I  G  + +IA  L ++  
Sbjct: 158 QEVINDTRAIEALDADTQKMVDSS-----SLTPKELEVLELIVAGCNNAQIAEALFVTVG 212

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  ++ SI+ K     R+ A   A+R+ +V
Sbjct: 213 TVKTHVRSILNKLCANDRTQAAVRALRSGLV 243


>gi|145597841|ref|YP_001161917.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           F]
 gi|145209537|gb|ABP38944.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           F]
          Length = 247

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           +++L +   ++  L+    N+ +           L+ RE E L W S GKT  EIA+I  
Sbjct: 148 QMLLIETHEKMLTLSQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITN 207

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+  TV  +I ++++K        AI   V   I+
Sbjct: 208 ITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEII 242


>gi|50954652|ref|YP_061940.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951134|gb|AAT88835.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 203

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           ++L+      +  D+L    +      ++    +V      +LT RE E    +  G T+
Sbjct: 99  ILLVEAVRAAVSGDQLISPSVTVRLLRHLSPRPEVTTAAGPQLTPRERETAALVGRGLTN 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI V L I+  TV ++++S+  K   + R    A+A RN ++
Sbjct: 159 AEICVELVIALGTVKSHLSSLQLKLGVRNRVEIAAWAWRNGLL 201


>gi|22127251|ref|NP_670674.1| transcriptional activator [Yersinia pestis KIM 10]
 gi|45443197|ref|NP_994736.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597561|ref|YP_071752.1| quorum-sensing transcriptional regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806277|ref|YP_650193.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua]
 gi|108813343|ref|YP_649110.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|149367009|ref|ZP_01889042.1| quorum-sensing transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|153947986|ref|YP_001399708.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162421668|ref|YP_001604810.1| LuxR family transcriptional regulator [Yersinia pestis Angola]
 gi|165927117|ref|ZP_02222949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939283|ref|ZP_02227832.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008826|ref|ZP_02229724.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212673|ref|ZP_02238708.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402287|ref|ZP_02307757.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419559|ref|ZP_02311312.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425196|ref|ZP_02316949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468622|ref|ZP_02333326.1| transcriptional regulator, LuxR family protein [Yersinia pestis
           FV-1]
 gi|170023040|ref|YP_001719545.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186896695|ref|YP_001873807.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928157|ref|YP_002346032.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92]
 gi|229836665|ref|ZP_04456830.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           A]
 gi|229840908|ref|ZP_04461067.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842531|ref|ZP_04462686.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903808|ref|ZP_04518921.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|270487592|ref|ZP_06204666.1| autoinducer binding domain protein [Yersinia pestis KIM D27]
 gi|294502863|ref|YP_003566925.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003]
 gi|21960323|gb|AAM86925.1|AE013939_2 putative transcriptional activator [Yersinia pestis KIM 10]
 gi|30146756|gb|AAC28703.2| response regulator YtbR [Yersinia pseudotuberculosis]
 gi|45438065|gb|AAS63613.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590843|emb|CAH22497.1| Quorum-sensing transcriptional regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776991|gb|ABG19510.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|108778190|gb|ABG12248.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua]
 gi|115346768|emb|CAL19652.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92]
 gi|149290623|gb|EDM40699.1| quorum-sensing transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|152959481|gb|ABS46942.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           IP 31758]
 gi|162354483|gb|ABX88431.1| transcriptional regulator, LuxR family [Yersinia pestis Angola]
 gi|165912757|gb|EDR31385.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921013|gb|EDR38237.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992165|gb|EDR44466.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205965|gb|EDR50445.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962300|gb|EDR58321.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048324|gb|EDR59732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055959|gb|EDR65740.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749574|gb|ACA67092.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186699721|gb|ACC90350.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679578|gb|EEO75681.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|229690841|gb|EEO82895.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697274|gb|EEO87321.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705608|gb|EEO91617.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           A]
 gi|262360896|gb|ACY57617.1| quorum-sensing transcriptional regulator [Yersinia pestis D106004]
 gi|262364841|gb|ACY61398.1| quorum-sensing transcriptional regulator [Yersinia pestis D182038]
 gi|270336096|gb|EFA46873.1| autoinducer binding domain protein [Yersinia pestis KIM D27]
 gi|294353322|gb|ADE63663.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003]
 gi|320013931|gb|ADV97502.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 247

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           +++L +   ++  L+    N+ +           L+ RE E L W S GKT  EIA+I  
Sbjct: 148 QMLLIETHEKMLTLSQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITN 207

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+  TV  +I ++++K        AI   V   I+
Sbjct: 208 ITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEII 242


>gi|119358450|ref|YP_913094.1| two component LuxR family transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355799|gb|ABL66670.1| two component transcriptional regulator, LuxR family [Chlorobium
           phaeobacteroides DSM 266]
          Length = 203

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT REVE L  +  G TS +IA  L IS  TV  +   IM K   +T +G   YA  
Sbjct: 140 EGQLTNREVEVLRCVVRGLTSRQIASELFISHRTVETHRQHIMEKLNIRTATGLAGYARE 199

Query: 243 NNIV 246
           + ++
Sbjct: 200 HGLI 203


>gi|333023628|ref|ZP_08451692.1| putative LuxR family transcriptional regulator [Streptomyces sp.
           Tu6071]
 gi|332743480|gb|EGJ73921.1| putative LuxR family transcriptional regulator [Streptomyces sp.
           Tu6071]
          Length = 290

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTS 203
                 L DRL +  L A       +      G         LT REVE L  ++EG T+
Sbjct: 187 GAHLRGLADRLTDPALRAELLGVCARLAAADAGPPRDTQAPPLTPREVEVLVIVAEGATN 246

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +A  LG+   TV  Y+ + MRK   +TR  A+A A R  +V
Sbjct: 247 AAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGVV 289


>gi|324999601|ref|ZP_08120713.1| regulatory protein LuxR [Pseudonocardia sp. P1]
          Length = 245

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 4/158 (2%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              D    +L+R   +   V     +    +       + Y     D   I   L  +  
Sbjct: 88  PGLDLVRALLERCRGVRILVLTGCRDRESMMRTVRLGVHGYLRKGADTPEIVRALRSVLR 147

Query: 150 KGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              +          L +    A    +      K   LT RE + L  ++ G ++ EI  
Sbjct: 148 GEGVFDPGTTSAGPLQVLREPAPAAPAAGADLCKTSLLTDRENQVLRLLAVGLSNREIGG 207

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV  ++ ++  K   + R+  +  A R  IV
Sbjct: 208 RLRISEATVKFHVRNLRDKLEVRRRTEIVYTAARQGIV 245


>gi|320106542|ref|YP_004182132.1| LuxR family transcriptional regulator [Terriglobus saanensis
           SP1PR4]
 gi|319925063|gb|ADV82138.1| transcriptional regulator, LuxR family [Terriglobus saanensis
           SP1PR4]
          Length = 236

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 12/181 (6%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +  ++  +D ++  +   D    +A+    +      R      PV           AG
Sbjct: 59  TEALRDSAIDLVLVDNPILD--DLLAIITSFRRGRPALRVV-TLGPVVGMDVIERIIAAG 115

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y + T     +R+ + ++        R  L  +  L        +S +     +  
Sbjct: 116 AK-GYLTYTSGPGDLRMAIEVVRDGSVWAPRKVLSRLMDL--------RSPEEKERPELR 166

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE + L  ++ G T+ +IA  L I   T   ++  ++RK     R G   YAV   I
Sbjct: 167 FTPREKQVLELLAAGHTNRDIAGKLSIDETTAKTHVGRLLRKIGVPNRVGLALYAVEKQI 226

Query: 246 V 246
           V
Sbjct: 227 V 227


>gi|297624009|ref|YP_003705443.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297165189|gb|ADI14900.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 211

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 72/218 (33%), Gaps = 16/218 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
            R+  +D        +  L E  G +  L+V      E  L+  V    P  ++  + L 
Sbjct: 4   PRLFLVDDHAVVRSGIRLLLEAHGGA--LVVGEADSGEAALER-VPELAPDIVLLDLTLP 60

Query: 94  EKDKYYNVLQ-----RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             +                L     H  PE +                +    +  +   
Sbjct: 61  GMNGIETARSLKARLPSVRLIALSMHEDPEYVRGFLEAGGNGYVPKSALETQLLDAIRAV 120

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +G      RL  +  LA   +           +   LT RE   L  I++G T  EIA 
Sbjct: 121 SRGEYYAPARL--LAELARDLSESGP------YRHVRLTERERSVLARIAQGCTYKEIAE 172

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LGIS  TV  Y      K   KTR+  + YA+++ ++
Sbjct: 173 ELGISDKTVATYRERAAEKLGLKTRAELVRYALQHGLI 210


>gi|302544370|ref|ZP_07296712.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461988|gb|EFL25081.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 232

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 10/170 (5%)

Query: 87  VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   L   +    + ++   P  L    F       +      + +         +   
Sbjct: 56  VRMPKLDGVEATRRICEQEGSPRVLILTTFDLDEYAFSALKAGASGFMLKDVPPGELLTA 115

Query: 144 LMLLFPKGRIILRDRLWEI------GLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
           +  +     ++       +       L       +          + E LT RE E +  
Sbjct: 116 IRAVHSGDAVVAPSTTRRLLNRFAPMLPGTAGGGIGGRSGAAGRPELERLTEREREVMML 175

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 176 VAQGLSNGEIAGRLVLSEATVKTHVGRILTKLELRDRVQVVVMAYETGLV 225


>gi|257057857|ref|YP_003135689.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587729|gb|ACU98862.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 218

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     L   V     G  L+ P+  + L   L   G        
Sbjct: 92  VHAALQGGASGFLLKDAGPTLLIEAVRAAARGDALVSPQVTVRL---LRHFG-------- 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K       +  ELTGRE++ +   + G T+ EI   L +S +TV  ++AS+ +K   +
Sbjct: 141 -RKQRPDRSTRAKELTGRELDVVRAAARGLTNSEIGAELYLSLSTVKTHLASVQQKLGVR 199

Query: 232 TRSGAIAYAVRNNI 245
            R    A+A RN I
Sbjct: 200 NRVEIAAWAWRNGI 213


>gi|42525668|ref|NP_970766.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|41815679|gb|AAS10647.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|325475224|gb|EGC78409.1| DNA-binding response regulator [Treponema denticola F0402]
          Length = 201

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L  RE + L  +++G  + EIA  L +S  TV NY++SI+ K   + R+  + Y
Sbjct: 143 DLNDRETDILELVADGLNNKEIANRLSLSEGTVRNYVSSILEKLNLRDRTQLVVY 197


>gi|261823621|ref|YP_003261727.1| LuxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|2495420|sp|Q47189|EXPR_PECCC RecName: Full=Transcriptional activator protein expR
 gi|599736|emb|CAA56646.1| expR [Pectobacterium carotovorum]
 gi|261607634|gb|ACX90120.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
               ++ Y+  +    D         + RE E L W S GKT  EIA+IL I   TV  +
Sbjct: 155 HAETISLYREMIRNKEDERSNDKDIFSQRENEILYWASMGKTYQEIALILDIKTGTVKFH 214

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           I ++++K        AI   +   ++
Sbjct: 215 IGNVVKKLGVLNAKHAIRLGIELQLI 240


>gi|326381697|ref|ZP_08203391.1| putative two component system response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199944|gb|EGD57124.1| putative two component system response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 213

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           S +   G +++ LT RE E L   + G ++ EIA    +S  TV  +++ I+ K + + R
Sbjct: 141 SRNADPGPEYDTLTAREREILVRAASGLSNAEIASAEFLSEATVKTHVSRILAKLSLRDR 200

Query: 234 SGAIAYAVRNNIV 246
              + YA  + +V
Sbjct: 201 VQLVVYAYEHGLV 213


>gi|238752048|ref|ZP_04613532.1| Two component transcriptional regulator, LuxR family [Yersinia
           rohdei ATCC 43380]
 gi|238709748|gb|EEQ01982.1| Two component transcriptional regulator, LuxR family [Yersinia
           rohdei ATCC 43380]
          Length = 237

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 17/200 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           ++V       + +  ++  D  F +V                +P   L       +    
Sbjct: 36  MIVDDHPLMRRGIRQLLELDSSFTVVAEANSGSDAIVKAAQYQPDVILLDLNMKGMTGLD 95

Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------------GL 164
           T  A    G+D R   LT   AR  +  M+       +L+D   EI             +
Sbjct: 96  TLKALRNEGIDARVIILTVSDARSDVYAMIDAGADGYLLKDSEPEILLDNIRHAAKGEKV 155

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            +        S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +I ++
Sbjct: 156 FSNEVVIYLSSRHEQVNPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNL 215

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           +RK   ++R  A    + N 
Sbjct: 216 LRKLNVRSRVAATIMFLENK 235


>gi|302533866|ref|ZP_07286208.1| two component transcriptional regulator [Streptomyces sp. C]
 gi|302442761|gb|EFL14577.1| two component transcriptional regulator [Streptomyces sp. C]
          Length = 218

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 8/185 (4%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLPENI 120
            D+   +   + V+   P  L+  + + + D        +    P  +    F       
Sbjct: 32  ADVVDGEAALAAVAEHRPDVLLLDIRMPKLDGLEVTRRLSGQDTPRIVIVTTFDLDEYVH 91

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
               G  + +       A +   +        ++          L    A    +     
Sbjct: 92  AALHGGASGFLLKDASPAMLVEAVRAAAAGDALVSPAITVR---LLRDMAPRTPAARTAR 148

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + +  ++ G T+ EIA  L +S +TV  ++A++  K   + R    A+A
Sbjct: 149 RPAEPLTERERDVVRCLARGLTNAEIAAELYVSLSTVKTHLANVQAKLDARNRVEIAAWA 208

Query: 241 VRNNI 245
             + +
Sbjct: 209 WESGL 213


>gi|289668036|ref|ZP_06489111.1| transcriptional regulator [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 923

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R  A+A A+   +
Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRENALAQALERGL 908

Query: 246 V 246
           +
Sbjct: 909 L 909


>gi|239943901|ref|ZP_04695838.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 260

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P       + L ++  +    +    +      + + L+ REVE +  I+ G ++ +IA 
Sbjct: 157 PAHTAEPSESLSQLQPVVGESSVSGGTVPTPNRQQYGLSSREVEVMDLIASGMSNQQIAA 216

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              IS  TV N+I  I  K  + TRS AIA+
Sbjct: 217 TCFISEKTVKNHINRIFTKLHSATRSEAIAH 247


>gi|222106363|ref|YP_002547154.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737542|gb|ACM38438.1| two component response regulator [Agrobacterium vitis S4]
          Length = 896

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 2/159 (1%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           PF +V    L    +     ++   L           +   A    +  +   +    + 
Sbjct: 735 PFRIVEARILRNAGQIDAAAEKLRTLAAGARQEGRILMARQAEALAKVIAPAHEAEETQP 794

Query: 143 GLMLLFP-KGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEG 200
             +       R ILRD +  +           +   +   G   ELT RE + L  +  G
Sbjct: 795 ADLEDDTMATRRILRDFISPVAASPNPGGGQRQEARLSLRGSLTELTQREDDVLQLMRWG 854

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ++ EIA  L I+ NTV ++  +I  K   K+R+ A+  
Sbjct: 855 LSNSEIATRLDINLNTVKSHAKNIFAKLGVKSRTQAVLK 893


>gi|297580055|ref|ZP_06941982.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535701|gb|EFH74535.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 253

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89
           L++++            +     + G    +        +  ++ I  +  DW FD    
Sbjct: 23  LISQLEESHSFSKVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 81

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141
           +  +   KY  + +   E   P F T   ++          P G       +        
Sbjct: 82  IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 141

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISE 199
            G + L  K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 142 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 201

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 202 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 246


>gi|134097815|ref|YP_001103476.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005549|ref|ZP_06563522.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910438|emb|CAM00551.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 217

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 5/156 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+  ++   + + P  +    F      +       + +   +     +   + +    
Sbjct: 65  GLTAIERIAKLPEAPAVVALTTFDADQYVLRALRAGASGFLVKSTPPEDLIGLVRVAADG 124

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++  +    +   +A +     S  V      +LT RE E L  + EG ++ +IA  L
Sbjct: 125 HTVLSLEATRRLVAASADEHGQRASALVR-----DLTEREREVLACLGEGLSNAQIAERL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  TV  +++  M K     R+ A   A    +V
Sbjct: 180 FLSEATVKGHVSRTMTKLRCTNRTQAGLLAYDAGLV 215


>gi|88706284|ref|ZP_01103990.1| two-component system response regulator [Congregibacter litoralis
           KT71]
 gi|88699435|gb|EAQ96548.1| two-component system response regulator [Congregibacter litoralis
           KT71]
          Length = 222

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLL---AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            RD L ++ L+     Y A           +   LTGRE + L  I  GK++ EIA  L 
Sbjct: 125 ARDMLAKLPLILMGERYVAPELTDIIRKGQQGETLTGRERQVLNMIVMGKSNKEIAQELN 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  +  S+M K    + +  +A A+++ ++
Sbjct: 185 ISPKTVEKHRGSVMLKLEVHSVAQLMARALKDGLI 219


>gi|332662977|ref|YP_004445765.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331791|gb|AEE48892.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 231

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELT 187
            Y   +  + RI   ++ +   G             +A   A  F+  ++    DF  LT
Sbjct: 119 GYALKSDSLERIETAILDVHHGGGYFSP-------AIAGKVARFFQEKELKADPDFCNLT 171

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L ++  GK   EIA  + IS   V++++  +  K    ++S AI  A+   +
Sbjct: 172 ARELEVLKYLVNGKRYQEIANAMFISYEGVHSHVKKVYEKLHVNSKSEAIIKAIDAKL 229


>gi|312883206|ref|ZP_07742935.1| DNA-binding HTH domain-containing protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309369129|gb|EFP96652.1| DNA-binding HTH domain-containing protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 217

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R  +  LL  Y++ +            +LT RE++ L  +  G ++ +IA  + IS  T
Sbjct: 129 PRKVDAQLLFYYRSVVETQTAPAT---VDLTAREIQILRCLMIGASNTQIAEDMFISEFT 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243
           V +++  I +K + + R  A A+A ++
Sbjct: 186 VKSHLQKIFKKLSVRNRVQAAAWAKQH 212


>gi|307322284|ref|ZP_07601649.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306892066|gb|EFN22887.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
          Length = 255

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAV 208
           R      L   GL+A  QA+  +  D+    DF    LT RE + L  I  G  +  IA 
Sbjct: 150 RRPAPRGLAGGGLVAQKQAS-LEDIDLERKIDFGQDLLTMRETQILDLICVGMQNKIIAD 208

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LG+S NTV  ++ +I +K   + R+ A A   R
Sbjct: 209 RLGLSENTVKVHVRNIYKKMNVRNRTEAAARYFR 242


>gi|260433411|ref|ZP_05787382.1| DNA-binding response regulator, LuxR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417239|gb|EEX10498.1| DNA-binding response regulator, LuxR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 214

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 16/163 (9%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAG-MDNRYCSLTFDVARIRIG 143
           +    +        +L+R  +    +   H  PE I+         Y         I+  
Sbjct: 58  LNMPGMGGLSATEIILERLPQTRILILSMHDSPEYISTALSHGAKGYILKDVPTDEIKQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R           L      ++    D        LTGRE   L  +++GK++
Sbjct: 118 IDAVMRGERY----------LCTGASGSLEPKGDSTREA---LTGREQTILLELAQGKSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 165 KEVAQTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|297561045|ref|YP_003680019.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845493|gb|ADH67513.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 247

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  + +            L    F                +     
Sbjct: 64  DVVLMDIRMPGLDGIGATRRICADPATAGVRVLILTTFDLDEYVYAALRAGAAGFLLKDT 123

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             +R+   + ++     ++          L +  A + +           +T REVE L 
Sbjct: 124 PPSRVLDAITVVAAGDALLAPSVTRR---LISEFARLPEPGRPPARALDGVTDREVEVLG 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ E+A  L +S  TV  +I  +  K   + R+  +  A    +V
Sbjct: 181 LIARGLSNTELAEHLHLSLATVKTHIGRLRAKLGARDRAQLVITAYETGLV 231


>gi|225028039|ref|ZP_03717231.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353]
 gi|224954639|gb|EEG35848.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353]
          Length = 223

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 3/161 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           +R   +   +    V ++  +++  V  T  ++      +    + Y      +  +   
Sbjct: 55  IRMPGIDGVECTRLVKEKYPDIYIIVLTTFDDDEYIFGALKYGASGYLLKGISMKNLAEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I  +   +I  L  + A    +  V      ELT  E   +  I  G ++
Sbjct: 115 IRTVVSGKAMINPEITDKIVKLFNHMAQSSYAIQVDNELTEELTKTEWRVIQKIGCGMSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L +S  TV NY++S++ K   + R+    +AV+  
Sbjct: 175 KEIASELALSEGTVRNYLSSVLSKLELRDRTQLAIWAVQTG 215


>gi|297197731|ref|ZP_06915128.1| response regulatory protein [Streptomyces sviceus ATCC 29083]
 gi|197716240|gb|EDY60274.1| response regulatory protein [Streptomyces sviceus ATCC 29083]
          Length = 215

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 133 LTFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +T  V    IG +L   +   +   +RD     G L+A  A+   +          L+ R
Sbjct: 100 ITRAVEAGAIGYLLKAEQPEELFSAIRDAASGRGALSAPVADRLLTR--LRSPRPALSAR 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++ G  + EIA  L IS  TV  ++  I  K   +TR+GA+A A    ++
Sbjct: 158 EHEILAQLARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVAKERRLL 214


>gi|163754837|ref|ZP_02161958.1| two-component response regulator [Kordia algicida OT-1]
 gi|161324904|gb|EDP96232.1| two-component response regulator [Kordia algicida OT-1]
          Length = 225

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            N +     +   +   +  +  K    L+++L EI  L        K  +        L
Sbjct: 101 ANAFIPKDIEPEELVTVIETVHKKEHYFLKEQL-EIMRLQL----SKKVPEFTVESKDAL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  + +  T+ EI   L IS  TV  +  +++ KT  K  +G + YA++N IV
Sbjct: 156 TSRETDILKLLCQQFTTKEIGEQLFISPKTVETHKTNLLLKTGVKNTAGLVIYAIQNKIV 215


>gi|22125339|ref|NP_668762.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           KIM 10]
 gi|45442440|ref|NP_993979.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Microtus str. 91001]
 gi|167399199|ref|ZP_02304723.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|21958219|gb|AAM85013.1|AE013747_3 nitrate/nitrite response regulator [Yersinia pestis KIM 10]
 gi|45437305|gb|AAS62856.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Microtus str. 91001]
 gi|167051703|gb|EDR63111.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. UG05-0454]
          Length = 220

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 18/204 (8%)

Query: 59  SHFLLVRWDL-FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTL 116
           SH +L+  D     + +  ++  D  FD+V                +P   L       +
Sbjct: 15  SHTILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSDAITEAAKFQPDVILLDLNMKGM 74

Query: 117 PENITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-- 170
               T  A    G D R   LT   AR  +  M+       +L+D   EI L    QA  
Sbjct: 75  SGLDTLKALRHNGSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAAR 134

Query: 171 ----------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
                         S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +
Sbjct: 135 GENVFSDEVIQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVH 194

Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244
           I +++RK   ++R  A    + N 
Sbjct: 195 IRNLLRKLNVRSRVAATIMYLENK 218


>gi|332708630|ref|ZP_08428603.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332352586|gb|EGJ32153.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 211

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF +L                +   +  +  G   L P            I      Q N
Sbjct: 90  VFQSLQAGALGYLLKSTPAPKVAAAIRSLHQGYSQLGPT-----------IAPKVFSQLN 138

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +          +   RE++ L  + +GK++ EIA  L ++  T+ N++ +I  +   +
Sbjct: 139 NTQPEREKTDYHAQFNQRELQILKLLGQGKSNREIAAALNLTEGTIKNHLTNIFCELDVR 198

Query: 232 TRSGAIAYAVRN 243
            R+ A  +A ++
Sbjct: 199 DRTQAALWAHQH 210


>gi|325286932|ref|YP_004262722.1| LuxR family two component transcriptional regulator [Cellulophaga
           lytica DSM 7489]
 gi|324322386|gb|ADY29851.1| two component transcriptional regulator, LuxR family [Cellulophaga
           lytica DSM 7489]
          Length = 215

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 15/169 (8%)

Query: 84  FDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGMDN---RYCSLTFDV 137
             L+  + + E D       V +R T L   V     +       + N    Y     + 
Sbjct: 54  HLLITDLTMPEVDGIELNNIVKERFTSLKTLVVSMHIDGTMIDTLIRNNVDGYVPKNAEK 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    +    +      +  AY   MF S      K+  LT RE E L  I
Sbjct: 114 EELLEAIRSIVKGEKYFSSE------IKKAYTDAMFAS---KKEKEISLTNREKEVLKLI 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E  T+ EIA  L +S++T+ +Y  +++ K   K  +G   +A++  ++
Sbjct: 165 AEEYTTQEIADELFLSKHTIESYRKNLISKLNVKNLAGLTKHAIKIGLL 213


>gi|302387360|ref|YP_003823182.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
 gi|302197988|gb|ADL05559.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
          Length = 222

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 75/190 (39%), Gaps = 6/190 (3%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPE 118
           + V       Q++   V  + P  ++  + + + D       + +   ++   +  T  +
Sbjct: 27  MTVTDVAADGQEVIRCVRKNVPDVILMDVRMPKMDGVQCTKIIKESYPQIKIIILTTFDD 86

Query: 119 NITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           +      +    + Y      +  +   +  ++    +I  D   ++    +  A    +
Sbjct: 87  DEYVYNALKYGASGYMLKGVSMDELVGAITTVYNGWAMINPDIAAKVLRFFSQMAQADDT 146

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V      ELT  E + +  + +G ++ EIA  L +S  TV NY+++I+ K   + R+ 
Sbjct: 147 ISVREKDMEELTRTEWKIIAQVEKGASNKEIAKNLNLSEGTVRNYLSTILNKLDLRDRTQ 206

Query: 236 AIAYAVRNNI 245
              +AV+ N+
Sbjct: 207 LAIWAVQTNV 216


>gi|302522670|ref|ZP_07275012.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78]
 gi|318057801|ref|ZP_07976524.1| response regulator [Streptomyces sp. SA3_actG]
 gi|302431565|gb|EFL03381.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78]
          Length = 290

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTS 203
                 L DRL +  L A       +      G         LT REVE L  ++EG T+
Sbjct: 187 GAHLRGLADRLTDPALRAELLGVCARLAAADAGPPRGAQAPPLTPREVEVLVIVAEGATN 246

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +A  LG+   TV  Y+ + MRK   +TR  A+A A R  +V
Sbjct: 247 AAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVAVARRAGVV 289


>gi|119714200|ref|YP_919342.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526109|gb|ABL79479.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 214

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  I+ G+++ EIA  L +S  T  N+++SI+ K    TR+ A+A A    +
Sbjct: 153 LSAREVEVLDLIAAGRSNAEIAASLVVSPKTAKNHVSSILTKLGC-TRTEAVARARDAGL 211


>gi|223934791|ref|ZP_03626711.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896746|gb|EEF63187.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 211

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 6/136 (4%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   VF    +  +  A   + Y       +++   +  +   G  +         ++ +
Sbjct: 82  VMLTVFEDTEKIFSALAAGASGYLLKRMPPSKLLDAIREVNEGGSPMSAP--IARKVVES 139

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            QA      D       EL+ RE E L  ++EG    +IA  LG+S +TV NYI  I  K
Sbjct: 140 LQATRPPKPDDTA----ELSPREREVLEGLAEGCAYKQIADKLGVSIHTVRNYIRRIYEK 195

Query: 228 TATKTRSGAIAYAVRN 243
              ++ S A+A   R+
Sbjct: 196 LHVRSSSQAVARYYRH 211


>gi|158338175|ref|YP_001519352.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158308416|gb|ABW30033.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 224

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +T RE + L  ++ G ++ EI+  L I+  TV N+++SI+ +   ++R+    +A
Sbjct: 157 ITPREQDVLKLVATGASNREISETLHITEKTVKNHVSSILSRVGVQSRTQLAIWA 211


>gi|149203303|ref|ZP_01880273.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
 gi|149143136|gb|EDM31175.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
          Length = 240

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 7/183 (3%)

Query: 63  LVRWDLFQ--EQKLDSIVSSDWPFDLVRCM---ALSEKDKYYNVLQRPTELFCPVFHTLP 117
           + R D  +  +Q L  +  +  P  +V  +    +S  D    +     E    V  ++ 
Sbjct: 47  IGRIDTAESLDQALAMVAENGPPDIIVLDLNLPDVSGLDGLARLRAVAGETPIVVVSSMS 106

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           E+    + +     +  F     +  +     +        L E  +L   Q       D
Sbjct: 107 ESRMVCSVIHAG--AAGFVPKHSQRPVFRAAFEAIAAGEIFLPEGVVLTKTQEQPVNDRD 164

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT ++   L  I EG+ + +IA  L I+  TV  ++ +IMRK   +TR+ A+
Sbjct: 165 EAVERLAHLTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAV 224

Query: 238 AYA 240
             A
Sbjct: 225 LIA 227


>gi|157370683|ref|YP_001478672.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157322447|gb|ABV41544.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 497

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELT 187
           Y  +  D+   +   + L      +++D  W    L    AN+      ++      +LT
Sbjct: 370 YLLVMMDITERKRSELELVSAIEEVMQDASWFSQTLLEKLANVKSINKPNLSGFSFTDLT 429

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I EG    +IA  L ++ NTV N++A +  K    +RS AI +A    +
Sbjct: 430 ARERDVLGLICEGLPDKKIATRLNLAPNTVRNHVAMVYSKLDVHSRSEAIVWARERGL 487


>gi|329851246|ref|ZP_08266003.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
 gi|328840092|gb|EGF89664.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
          Length = 247

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +   LT  E  CL   S G TS+EI   + ++  TVN+Y+  I RK   + RS AIA 
Sbjct: 180 FNQQIGLTAGETTCLELASRGMTSEEIGAQMDLTTETVNSYMKLITRKLGARNRSQAIAD 239

Query: 240 AVRNNIV 246
           A+R N++
Sbjct: 240 ALRLNLI 246


>gi|271962987|ref|YP_003337183.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506162|gb|ACZ84440.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 14/134 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +            R   L   V  +  G  +  P               +AA    
Sbjct: 90  VFAAMRAGARGYVLKGARKAELVRSVQAVAEGEAIFGP--------------AIAARLTG 135

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F   +       ELT RE E L  ++E  T+ +IA  LG+S+ TV N+++++  K    
Sbjct: 136 YFTERERSEPALPELTRREREILGLVAEHLTNPQIAARLGLSQKTVRNHVSAVFSKLQVA 195

Query: 232 TRSGAIAYAVRNNI 245
            R+ AI  A    +
Sbjct: 196 DRAHAIMRAREAGL 209


>gi|225869438|ref|YP_002745386.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702714|emb|CAX00841.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 199

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT  E+E L  IS+  ++++I+  L ISR TV+ ++++I  K    +R GA+  A+
Sbjct: 135 ENHLLTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAI 194

Query: 242 RNNIV 246
           R  ++
Sbjct: 195 RLKLI 199


>gi|333027714|ref|ZP_08455778.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332747566|gb|EGJ78007.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 222

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 9/180 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK--------YYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            + +S  P  ++  + +   D             L     +    F      +       
Sbjct: 38  RLAASHLPDVVLMDIRMPGTDGLAATRHISADPALAAVHVVMLTTFEVDEYVVQSLRAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFEL 186
             +     + + +   +        ++        I    A       +  V   +   L
Sbjct: 98  AGFLGKGAEPSELLGAIRTAAAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSARLAAL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 158 TGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 217


>gi|330951723|gb|EGH51983.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 87

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R 
Sbjct: 22  VQLTVKERQVLEWVALGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 81

Query: 244 NIV 246
            ++
Sbjct: 82  GVI 84


>gi|269125504|ref|YP_003298874.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310462|gb|ACY96836.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 203

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++ ++          L+ RE E +  I+ G+++ EIA  L +S  TV N++  I  K   
Sbjct: 111 DLIRALRDASRARHGLSAREAEVMDLIATGRSNGEIARQLFLSEKTVKNHVNRIYAKLGV 170

Query: 231 KTRSGAIA 238
            +R+ AIA
Sbjct: 171 TSRASAIA 178


>gi|210050464|dbj|BAG80716.1| transcriptional regulator [Rhodococcus sp. YK2]
 gi|210050474|dbj|BAG80725.1| transcriptional regulator [Terrabacter sp. YK3]
          Length = 402

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 37/71 (52%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q + +    V +     L+ RE E L  ++ G+T+  IA  L ++  TV +++  I+RK 
Sbjct: 329 QLDTYPRQAVRFAPASSLSTRESEVLRLMAAGETNSAIAARLFVTDETVKSHVKQILRKL 388

Query: 229 ATKTRSGAIAY 239
             + R+ A+A 
Sbjct: 389 HARNRAEAVAK 399


>gi|51597079|ref|YP_071270.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808226|ref|YP_652142.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Antiqua]
 gi|108811507|ref|YP_647274.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|149365098|ref|ZP_01887133.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CA88-4125]
 gi|162418673|ref|YP_001607184.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Angola]
 gi|165926835|ref|ZP_02222667.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165935928|ref|ZP_02224498.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011211|ref|ZP_02232109.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212574|ref|ZP_02238609.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167422709|ref|ZP_02314462.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424621|ref|ZP_02316374.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167467011|ref|ZP_02331715.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           FV-1]
 gi|170023626|ref|YP_001720131.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186896169|ref|YP_001873281.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930086|ref|YP_002347961.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CO92]
 gi|229838637|ref|ZP_04458796.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895703|ref|ZP_04510874.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides A]
 gi|229899203|ref|ZP_04514346.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901771|ref|ZP_04516893.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|294504789|ref|YP_003568851.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Z176003]
 gi|51590361|emb|CAH22001.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775155|gb|ABG17674.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|108780139|gb|ABG14197.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Antiqua]
 gi|115348697|emb|CAL21643.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CO92]
 gi|149291511|gb|EDM41585.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CA88-4125]
 gi|162351488|gb|ABX85436.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Angola]
 gi|165916073|gb|EDR34680.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921186|gb|EDR38410.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989889|gb|EDR42190.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206505|gb|EDR50985.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166958416|gb|EDR55437.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167056503|gb|EDR66272.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169750160|gb|ACA67678.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
 gi|186699195|gb|ACC89824.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681700|gb|EEO77794.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|229687605|gb|EEO79678.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695003|gb|EEO85050.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701509|gb|EEO89537.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides A]
 gi|262362851|gb|ACY59572.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           D106004]
 gi|262366775|gb|ACY63332.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           D182038]
 gi|294355248|gb|ADE65589.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Z176003]
 gi|320014400|gb|ADV97971.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 209

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 18/204 (8%)

Query: 59  SHFLLVRWDL-FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTL 116
           SH +L+  D     + +  ++  D  FD+V                +P   L       +
Sbjct: 4   SHTILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSDAITEAAKFQPDVILLDLNMKGM 63

Query: 117 PENITPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-- 170
               T  A    G D R   LT   AR  +  M+       +L+D   EI L    QA  
Sbjct: 64  SGLDTLKALRHNGSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAAR 123

Query: 171 ----------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
                         S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +
Sbjct: 124 GENVFSDEVIQYLSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVH 183

Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244
           I +++RK   ++R  A    + N 
Sbjct: 184 IRNLLRKLNVRSRVAATIMYLENK 207


>gi|328887358|emb|CCA60597.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 226

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 8/167 (4%)

Query: 86  LVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVAR 139
           +V  + +   D       + + PT     V  T  ++      +    + +      +  
Sbjct: 59  VVIDLRMPGTDGIEATRLITEGPTGARVVVLTTFDDDDHVYGALHAGASGFLVKDMALDD 118

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I   + ++     +I         L+  +      +  V   +   +T RE E LT +  
Sbjct: 119 ILAAVRVVAAGDALIAPGVTRR--LIKEFTDRPRTAPAVPRRRAEGITDREREVLTLVGR 176

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ E+A  L IS  T   Y+  ++ K   + R   +  A    +V
Sbjct: 177 GLSNTEVAAELHISVATAKTYVTRLLAKLNARDRVQLVIIAYEAGLV 223


>gi|311896508|dbj|BAJ28916.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 203

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +S D+  G    LT RE++ L  +S G+++ EI   L +S +TV  +   + +K   
Sbjct: 129 RRLRSPDM--GAAPTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKLGA 186

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+A   R  +V
Sbjct: 187 SDRAHAVALGFRWGLV 202


>gi|294791176|ref|ZP_06756333.1| two-component system response regulator [Scardovia inopinata F0304]
 gi|294457647|gb|EFG26001.1| two-component system response regulator [Scardovia inopinata F0304]
          Length = 258

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I+ G T  E+A  L IS  TV  +++ ++RK     R     +A    I
Sbjct: 198 LTSREREVMQLIARGYTYKEVASELFISVKTVETHVSRVLRKLQLSNRGELALWAAHQRI 257

Query: 246 V 246
           V
Sbjct: 258 V 258


>gi|225871440|ref|YP_002747387.1| response regulator [Streptococcus equi subsp. equi 4047]
 gi|225700844|emb|CAW95568.1| putative response regulator [Streptococcus equi subsp. equi 4047]
          Length = 199

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 170 ANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            N     D+   ++  L T  E+E L  IS+  ++++I+  L ISR TV+ ++++I  K 
Sbjct: 122 GNQVIPDDLLQREESHLLTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKL 181

Query: 229 ATKTRSGAIAYAVRNNIV 246
              +R GA+  A+R  ++
Sbjct: 182 NVTSRVGAVREAIRLKLI 199


>gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 242

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 25/186 (13%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFC---PVFHTLPENITP-----PAGMDNRYCSLT 134
           P  ++  + +   + Y  + +   +      PV     + +T           + Y S  
Sbjct: 59  PDLIISDVMMPRANGYDLLKKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKP 118

Query: 135 FDVARIRIGLMLLFPKGRIILRD--------------RLWEIGLLAAYQANMFKSYDVHW 180
           FD   +   +  +  +   +L++              ++ EI  +   Q        ++ 
Sbjct: 119 FDPDELAARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNQTNPENKINL 178

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                 T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA
Sbjct: 179 P---SFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYA 235

Query: 241 VRNNIV 246
           + N++V
Sbjct: 236 LENHLV 241


>gi|91778395|ref|YP_553603.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91691055|gb|ABE34253.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 361

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++       F LT RE E L W+S GKT+ +I  ILG++  TVN ++  +  K   +TR
Sbjct: 289 AHTSALASQFGLTAREAEVLLWLSRGKTNRDIGDILGMAPRTVNKHLEHVFGKLHVETR 347


>gi|145599420|ref|YP_001163496.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides F]
 gi|145211116|gb|ABP40523.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides F]
          Length = 209

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA------------NM 172
           G D R   LT   AR  +  M+       +L+D   EI L    QA              
Sbjct: 76  GSDARIIILTVSDARSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQY 135

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 136 LSSRHEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195

Query: 233 RSGAIAYAVRNN 244
           R  A    + N 
Sbjct: 196 RVAATIMYLENK 207


>gi|310643684|ref|YP_003948442.1| transcriptional regulator, luxr family [Paenibacillus polymyxa SC2]
 gi|309248634|gb|ADO58201.1| Transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2]
          Length = 75

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A+   +R 
Sbjct: 11  FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIRL 70

Query: 244 N 244
            
Sbjct: 71  G 71


>gi|284032715|ref|YP_003382646.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283812008|gb|ADB33847.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 217

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 4/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +    F              + +         +   +  +     ++       +  
Sbjct: 77  PKVIVLTTFDLDEYAFAGLRAGASGFLLKDASADEVLHAIRAVHAGDSVLAPSTTRRM-- 134

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                    ++          LT RE + L  I+ G ++ E A  L +S  TV  ++A +
Sbjct: 135 --LDHLPTARAGHEASPLLQRLTARERDVLLEIAHGHSNAETAQRLFLSEATVKTHVAHL 192

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N +V
Sbjct: 193 LAKLEVRDRVQAVIFAYENGLV 214


>gi|262202778|ref|YP_003273986.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262086125|gb|ACY22093.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 220

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 37/69 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +    D  LT RE+E +  ++ G+++ +IA  L +S  TV +++     K    +R+ A+
Sbjct: 151 MRTPPDTVLTPREIEIIAEVATGRSNRQIARELMLSEMTVKSHLVHAFTKLGVGSRTAAV 210

Query: 238 AYAVRNNIV 246
           A A R  ++
Sbjct: 211 AEARRRGVI 219


>gi|270308020|ref|YP_003330078.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270153912|gb|ACZ61750.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 224

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L   + G ++ +IA  L +S  T+  ++++I +K +  +R+ AI Y ++  
Sbjct: 157 PLTDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNICKKLSVGSRTEAILYGLKRG 216


>gi|15601642|ref|NP_233273.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121726448|ref|ZP_01679712.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147671672|ref|YP_001215191.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153802474|ref|ZP_01957060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153819712|ref|ZP_01972379.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153822367|ref|ZP_01975034.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|227812454|ref|YP_002812464.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|229510178|ref|ZP_04399658.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|229517693|ref|ZP_04407138.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|254850052|ref|ZP_05239402.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|298499668|ref|ZP_07009474.1| LuxR family transcriptional regulatory, chaperone HchA-associated
           [Vibrio cholerae MAK 757]
 gi|9658321|gb|AAF96785.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121631043|gb|EAX63420.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124121993|gb|EAY40736.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|126509730|gb|EAZ72324.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126520130|gb|EAZ77353.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146314055|gb|ABQ18595.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|227011596|gb|ACP07807.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227015536|gb|ACP11745.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|229345729|gb|EEO10702.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|229352623|gb|EEO17563.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|254845757|gb|EET24171.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297541649|gb|EFH77700.1| LuxR family transcriptional regulatory, chaperone HchA-associated
           [Vibrio cholerae MAK 757]
          Length = 253

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89
           L++++       +    +     + G    +        +  ++ I  +  DW FD    
Sbjct: 23  LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 81

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141
           +  +   KY  + +   E   P F T   ++          P G       +        
Sbjct: 82  IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 141

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISE 199
            G + L  K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 142 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 201

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 202 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 246


>gi|270264592|ref|ZP_06192857.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041275|gb|EFA14374.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 210

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------LAAYQANM 172
            +D R   LT   +R  +  ++       +L+D   E  L            ++   A+ 
Sbjct: 77  SIDARIIVLTVSDSRSDVYALIDAGADGYLLKDSEPEQLLEHIRAAAEGQNVISDAVADY 136

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 137 LSSRSEQHDPFAELTERELDVLQEVARGMSNKQVAAQLHISEETVKVHIRNMLRKLDVRS 196

Query: 233 RSGAIAYAVRNN 244
           R  A    + + 
Sbjct: 197 RVAATVMYLEHK 208


>gi|190573818|ref|YP_001971663.1| putative LuxR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011740|emb|CAQ45360.1| putative LuxR family transcriptional regulatory protein
           [Stenotrophomonas maltophilia K279a]
          Length = 234

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W++ G+   EIA  LG+S  TV N++    ++    T + A+  A R   
Sbjct: 172 LSTREREVLRWVAAGRRQAEIAATLGLSTRTVENHLRHARQRLGVATTAQAVRAANRRGE 231

Query: 246 V 246
           +
Sbjct: 232 I 232


>gi|146306170|ref|YP_001186635.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
 gi|145574371|gb|ABP83903.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
          Length = 868

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  I++G ++ EIA  L IS +TV  +   I  K   + R+ A+A A    +
Sbjct: 806 LSSRELAVLQLIAQGCSNQEIADRLFISLHTVKTHARRINVKLGVQRRTQAVAMAKAYGL 865


>gi|21223737|ref|NP_629516.1| chitinase two-component response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785170|ref|ZP_05523601.1| chitinase two-component response regulator [Streptomyces lividans
           TK24]
 gi|289769063|ref|ZP_06528441.1| response-regulator [Streptomyces lividans TK24]
 gi|4323625|gb|AAD16452.1| response-regulator [Streptomyces coelicolor A3(2)]
 gi|8568799|emb|CAB94548.1| chitinase two-component response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289699262|gb|EFD66691.1| response-regulator [Streptomyces lividans TK24]
          Length = 213

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 5/167 (2%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           P  ++  + +   D        V ++  ++       L E +            L    A
Sbjct: 48  PDLVLMDVQMPRMDGVSATRIVVGEQLADVLVLTTFDLDEYVFGALRAGAAGFLLKNTDA 107

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R  +  +     G  I+   +    L+A + A   +          ELT RE E L+ + 
Sbjct: 108 RDLLAAVRTVAGGEGIVAPAVTRR-LIAEFAAKPVREPTADPAVLRELTRREREVLSCLG 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG ++  +A  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 167 EGLSNAAVAERLDMAEATVKTHVSRLLGKLGLRSRVQAAVLAQELGI 213


>gi|315618207|gb|EFU98797.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 3431]
          Length = 216

 Score = 85.8 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ S+
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYSL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|292558970|gb|ADE31971.1| Response regulator [Streptococcus suis GZ1]
          Length = 190

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  D+   +   LT  E + L  ++EG ++ EIA  L +S  TV NY+ S
Sbjct: 107 VLAGRKEYSPELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTS 166

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+  A    
Sbjct: 167 ILSKLGAENRTAAVKVAQEKG 187


>gi|288904336|ref|YP_003429557.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|288731061|emb|CBI12607.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
          Length = 227

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 6/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NR 129
             + +  P  ++  + + + D       V +    +   +  T  ++    + +      
Sbjct: 41  ETLPTSKPDVILMDIRMPKMDGVLCTKAVKENYPNIKVIILTTFDDDDFIYSALKYGATG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      +  +   ++       +I  D   ++  L +  A    +  V      +++  
Sbjct: 101 YMLKGTSMDDLHDAVVTANEGRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKM 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E   +  I  G ++ EIA  L +S  TV NY+++I+ K   + R+    +AV+  +
Sbjct: 161 EWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTGV 216


>gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 242

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 70/184 (38%), Gaps = 21/184 (11%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP-----PAGMDNRYCSL 133
           P  ++  + +   + Y  +L++  E       PV     + +T           + Y S 
Sbjct: 59  PDLIISDVMMPRANGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISK 117

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW-----------EIGLLAAYQANMFKSYDVHWGK 182
            FD   +   +  +  +   +L++              +I  + +   +   +   +   
Sbjct: 118 PFDPDELAARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPTNSENKID 177

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
               T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ 
Sbjct: 178 IPSFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALE 237

Query: 243 NNIV 246
           N++V
Sbjct: 238 NHLV 241


>gi|148553426|ref|YP_001261008.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148498616|gb|ABQ66870.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 861

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
             TL E +        +      ++      L+    +   +  +    +  L+      
Sbjct: 727 IATLVELLQSAQQPSMQAFIEEGELMARLCSLVAHHSQRHALGPEASRFLAELSERLGQS 786

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ++           L+ RE E L  +++G+++   A  L +S  TV  ++  I RK     
Sbjct: 787 YEHVIDRDAGGSYLSAREREILLSLAQGESNKSTAERLNVSEATVKFHLQRIYRKLGAHN 846

Query: 233 RSGAIAYAVRNNIV 246
           R  AIA A +  ++
Sbjct: 847 RVKAIAVAQQQGLL 860


>gi|73538891|ref|YP_299258.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72122228|gb|AAZ64414.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 217

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 79/224 (35%), Gaps = 21/224 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D    +   + AL +    + F +V       + +        P  ++  + 
Sbjct: 1   MTIRILLIDDHTLFRSGIRALLQR--QADFEIVDEAADGVEGIKR-AKQHRPDVILLDLN 57

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           +              E    +   LP++      +      L   + R   G +L   + 
Sbjct: 58  MPGLSG--------LEALQLLVEDLPDSAVIVLTVSEEAEELATALRRGARGYLLKNIET 109

Query: 152 RIILRDRLWEIG-------LLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGK 201
             +                 + A     F++      +     +LT RE E +  ++ G+
Sbjct: 110 EALTSAIRRAAAGEPVISEAMTAKLVQQFRAPAPAPVRQDDTAKLTAREREIVQGLTRGE 169

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  LG++ +TV  ++ +I++K    +R     YAV   +
Sbjct: 170 SNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVERGL 213


>gi|326334307|ref|ZP_08200525.1| putative two-component response regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325947916|gb|EGD40038.1| putative two-component response regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 224

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A    + +      G    LT RE+E L  I++G  + EIA  L +S NT+ ++I    
Sbjct: 117 TAAGEPINEPPSDRQGAAAGLTVREIEVLKLITQGLPNQEIAKRLAMSGNTLKSHIRRAY 176

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RK    TRS A+++A+ + +
Sbjct: 177 RKIHVTTRSQAVSWAIAHGL 196


>gi|325288921|ref|YP_004265102.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964322|gb|ADY55101.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE +CL  I EG  + EIA  LGI+  TV  ++ +I+ K   K+R  A
Sbjct: 169 LTSREKDCLKLICEGLRNKEIAEELGITNRTVEYHVGNILEKLGVKSRLEA 219


>gi|229820312|ref|YP_002881838.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566225|gb|ACQ80076.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 216

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 12/163 (7%)

Query: 89  CMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + ++  D      +          L    F          A   + + +     A +  
Sbjct: 59  DIRMARMDGIEACAEIRRHRPDTRVLMLTTFDLDEYLFRSVAAGASGFLTKDTPGADVAG 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     ++            A    + ++         +L+ RE + L  ++ G +
Sbjct: 119 AIREVHSGRSVVSPRATR------ALIDRIARAAPDAAAVAADLSPRERDVLALLARGFS 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L ++ +TV  +++S+ RK   + R   + +A RN I
Sbjct: 173 NAEIARELFVAESTVKTHVSSLTRKVGVRDRLHVVVWAYRNGI 215


>gi|307610791|emb|CBX00405.1| hypothetical protein LPW_21241 [Legionella pneumophila 130b]
          Length = 267

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++CL+ IS+G T  +I+  L +S  TVN +  SI  K +    + A++ A R  
Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLG 264

Query: 245 IV 246
           ++
Sbjct: 265 LL 266


>gi|284989376|ref|YP_003407930.1| LuxR family transcriptional regulator [Geodermatophilus obscurus
           DSM 43160]
 gi|284062621|gb|ADB73559.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus
           DSM 43160]
          Length = 983

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L  +++G+T+ +I   L +S  T + +++ I+ K     R+ A+A A    +
Sbjct: 918 FTPREAEVLRLLAQGRTNRQIGAELYMSEKTASVHVSRILAKLGAGGRTEAVALAAARGL 977

Query: 246 V 246
           +
Sbjct: 978 L 978


>gi|148359909|ref|YP_001251116.1| transcriptional regulator [Legionella pneumophila str. Corby]
 gi|148281682|gb|ABQ55770.1| transcription regulator protein, response regulator containing
           CheY-like receiver domain and HTH DNA-binding domain
           [Legionella pneumophila str. Corby]
          Length = 267

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++CL+ IS+G T  +I+  L +S  TVN +  SI  K +    + A++ A R  
Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLG 264

Query: 245 IV 246
           ++
Sbjct: 265 LL 266


>gi|54298259|ref|YP_124628.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris]
 gi|53752044|emb|CAH13470.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris]
          Length = 267

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++CL+ IS+G T  +I+  L +S  TVN +  SI  K +    + A++ A R  
Sbjct: 205 QLTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLG 264

Query: 245 IV 246
           ++
Sbjct: 265 LL 266


>gi|291457263|ref|ZP_06596653.1| two-component system response regulator [Bifidobacterium breve DSM
           20213]
 gi|291381098|gb|EFE88616.1| two-component system response regulator [Bifidobacterium breve DSM
           20213]
          Length = 227

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  +   L+ RE E +  I+ G T  E+AV L IS  TV  +++S++RK     R+    
Sbjct: 160 HDEELDRLSAREQEVMRLIARGYTYKEVAVELFISIKTVETHVSSVLRKLQLSNRTELTR 219

Query: 239 YAVRNNIV 246
           +A    IV
Sbjct: 220 WAADRRIV 227


>gi|159036019|ref|YP_001535272.1| LuxR family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914854|gb|ABV96281.1| transcriptional regulator, LuxR family [Salinispora arenicola
           CNS-205]
          Length = 195

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 17/191 (8%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEK-DKYYNVLQRPTELFCPVFHTLPENITPP 123
           R D+  + +   I + D PF +   +A ++   +      +P          L +   P 
Sbjct: 13  RADVVTKLRTAGINAVDRPFQVPVVVAAADTVGRAIRSCPQPYRTGDYRLLVLADAFDPA 72

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--------DRLWEIGLLAAYQANMFKS 175
                    ++F +      ++ +  +   +          +      +L     +    
Sbjct: 73  D--------VSFALRAGVRAMLSITSEPEKLAAAVHATNQSEGRMPSEVLLKLLHSRVAG 124

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V       LT R+   L  +++G  +  IA  L  S +TV N I  +M +     R+ 
Sbjct: 125 NPVSTPSPSPLTPRQTAVLNLMADGHPNVAIATALSCSEHTVKNVIYDMMMRLQVNNRAH 184

Query: 236 AIAYAVRNNIV 246
           A+A A+R  ++
Sbjct: 185 AVARAIRAGLI 195


>gi|21219875|ref|NP_625654.1| two component system DNA binding response regulator [Streptomyces
           coelicolor A3(2)]
 gi|256789028|ref|ZP_05527459.1| two component system DNA binding response regulator [Streptomyces
           lividans TK24]
 gi|289772921|ref|ZP_06532299.1| two component system DNA binding response regulator [Streptomyces
           lividans TK24]
 gi|13122115|emb|CAC32294.1| putative two component system DNA binding response regulator
           [Streptomyces coelicolor A3(2)]
 gi|289703120|gb|EFD70549.1| two component system DNA binding response regulator [Streptomyces
           lividans TK24]
          Length = 211

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   +    R    G  A   A   +           LT RE E L  +++G ++
Sbjct: 107 LLKDAPPEDLADAVRTAAAGRTALAPAVADRLMHRLRTPGTTLTRRETEVLALVADGLSN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I   L ++  TV +++A +  K    +R+ A+A A    ++
Sbjct: 167 QAIGRRLHLTEGTVKSHLARVYAKLDVDSRTAAVATAGSLGLI 209


>gi|300785055|ref|YP_003765346.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794569|gb|ADJ44944.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R  +  LL+  +A M +S +    +   L+ RE+E L  ++   ++ +IA  L IS  T
Sbjct: 126 SRTRDNVLLSIPRATM-ESLERQQEQRTLLSDRELEVLRLVAAAMSNAQIASRLFISEGT 184

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++ +I  K    +R  AI  A +  ++
Sbjct: 185 VKRHLTNIYGKLGAVSRVDAIKKAAKARLI 214


>gi|90020641|ref|YP_526468.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89950241|gb|ABD80256.1| regulatory protein, LuxR [Saccharophagus degradans 2-40]
          Length = 221

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL  +     ++       D +LT RE + L  I +G T+ +I+  L +S +TV +++ +
Sbjct: 136 LLHHFLDKNRRAPSKVAHPDVKLTRRERQILKLIKDGATNADISTALKVSEHTVKSHLYN 195

Query: 224 IMRKTATKTRSGA 236
           + +K   + R  A
Sbjct: 196 VYKKIGVRNRLEA 208


>gi|119025388|ref|YP_909233.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764972|dbj|BAF39151.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 226

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 17/163 (10%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R  + +      +V   P ++   +       +T     D+    L   + ++  G  + 
Sbjct: 77  RPYSPNTVFLALSVSDSPQDVGSVIRAGAQGYVTKTISGDD----LVSSIKQVHEGYAVF 132

Query: 148 FPKGRIILRDRLWEIGLLAAYQ----ANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            PK             +L+A+Q    AN      +H  +   L+ RE E +  I+ G T 
Sbjct: 133 SPKLAGF---------VLSAFQNGPSANGAFGGPIHDDELDRLSNREQEVMRLIARGYTY 183

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A  L IS  TV  +++S++RK     RS    +A    IV
Sbjct: 184 KEVASELFISIKTVETHMSSVLRKLQLSNRSELTRWAADRRIV 226


>gi|329922778|ref|ZP_08278313.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941920|gb|EGG38204.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 200

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            + + G++  LT RE E L  I++GK + EIA  L I+  TV NYI+ I+ K     R  
Sbjct: 129 DEAYSGEENPLTEREKEVLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIE 188

Query: 236 AI 237
           AI
Sbjct: 189 AI 190


>gi|330470665|ref|YP_004408408.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328813636|gb|AEB47808.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 338

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G+++ E+A  LGI   TV  +++ ++RK   + R  A+     + +
Sbjct: 278 LTAREREVLLAVARGRSNAEVAADLGIGDETVKTHVSEVLRKLGCRDRVQAVIAVYESGL 337


>gi|308070500|ref|YP_003872105.1| Germination protein gerE [Paenibacillus polymyxa E681]
 gi|305859779|gb|ADM71567.1| Germination protein gerE [Paenibacillus polymyxa E681]
          Length = 75

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A+   +R 
Sbjct: 11  FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIRL 70

Query: 244 N 244
            
Sbjct: 71  G 71


>gi|300784381|ref|YP_003764672.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
 gi|299793895|gb|ADJ44270.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
          Length = 1004

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 44/94 (46%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           I LRD + ++   A  +    +           LT RE + L  ++ G+T+ ++   L I
Sbjct: 906 IPLRDAVRDLAHRARVELAGLEPAPPARTVTDPLTDRERDVLERVALGRTNRQVGEELYI 965

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV+ +++ +M K     R+ A+A A    ++
Sbjct: 966 SEKTVSVHLSRVMAKLGASRRAEAVAIAYDRGLL 999


>gi|271967438|ref|YP_003341634.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510613|gb|ACZ88891.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 7/199 (3%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV---LQRPTEL 108
           L   + A+  L+V  + +   +    V    P  ++  + +   D    +   ++ P   
Sbjct: 17  LRTILSAAEDLVVVAEAYDGAEAVEAVVRHRPHVVLMDLHMPGVDGLAAIEHIVRFPAPP 76

Query: 109 FCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
              V  T   +      M        L        IGL+ +   G  +L        L A
Sbjct: 77  KVVVLTTFDRDGYVLRAMSLGAAGFLLKDTPPEDLIGLVRVAADGHTVLSPAATRRLLTA 136

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +  A    + D    +  +LT REVE LT + EG ++ +IA  L +S  T+ +Y++ ++ 
Sbjct: 137 S--AGHGAARDRALARIADLTDREVEVLTCLGEGLSNAKIARRLYLSEATIKSYVSRMLV 194

Query: 227 KTATKTRSGAIAYAVRNNI 245
           K     R+ A   A    +
Sbjct: 195 KLGFSNRTQAGLLASEAGL 213


>gi|254507717|ref|ZP_05119849.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           16]
 gi|219549414|gb|EED26407.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           16]
          Length = 196

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L +     +   ++       +A Y A+   S DV      
Sbjct: 84  AGADGYLLKDTEPDELVELLKVSLRGNKAYSKE-------VAKYLADRENSTDV----FD 132

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE++ L  +++G  + +IA  L IS +TV  ++ S+++K +  +R+ A    +  
Sbjct: 133 ELTDREMQILKEVAKGYRNKQIADTLFISESTVKVHMKSLLKKLSVPSRTAATVMYLER 191


>gi|330468305|ref|YP_004406048.1| NarL family two-component response regulator [Verrucosispora maris
           AB-18-032]
 gi|328811276|gb|AEB45448.1| NarL family two-component response regulator [Verrucosispora maris
           AB-18-032]
          Length = 219

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 11/156 (7%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLLFP 149
           S  +    +  R  E+   V     ++ +         + Y        ++  G+  +  
Sbjct: 69  SGVEATRLIRARHPEVAVLVVTMFDDDDSLFGALRAGASGYLLKGAAPQQVERGVRAVAN 128

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              ++  +           +A  F           +LT RE E L  +++G  +  IA  
Sbjct: 129 GELLLGPEI--------GARAVGFFVRGAAPVPFPQLTDREREILDHVAQGLDNATIAHR 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L +S  TV N++++I+ K     R+ AI  A    +
Sbjct: 181 LALSPKTVRNHLSNILVKIGVGDRAQAIVRAREQGL 216


>gi|262374576|ref|ZP_06067850.1| nitrate/nitrite response regulator [Acinetobacter junii SH205]
 gi|262310572|gb|EEY91662.1| nitrate/nitrite response regulator [Acinetobacter junii SH205]
          Length = 219

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 9/176 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++ LD +  +D     V  + L  K      ++   E+    F+T     T     ++  
Sbjct: 47  QEALDFLAKND-----VDLVILDHKMPILTGMETLKEIKARNFNTKTILFTVSDSGEDIQ 101

Query: 131 CSLTFDVARIRIGLM---LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
            +L   V    +  +   L+    RIILR  L     LA   A + ++  +       LT
Sbjct: 102 EALKLGVDGYLLKDIEPELIITDIRIILRGELVISPSLAPILAQILRTPSIE-DISSNLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE++ +  ISEG ++  IA  L I+ +TV  ++  I+ KT  +TR  A  + V +
Sbjct: 161 SRELQVIQMISEGLSNKMIAHKLSITESTVKVHVKHILNKTGLRTRVEAAVWTVNH 216


>gi|182435087|ref|YP_001822806.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463603|dbj|BAG18123.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 213

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA   A+     D        LT RE+E L  + EG ++  I+  L +S+ TV +++ 
Sbjct: 130 SALAPSVAHRLM--DRMRTPAEALTRRELEVLQLVGEGLSNLRISKRLFLSQATVKSHLV 187

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +R+ A+A A    ++
Sbjct: 188 HIYAKLGVDSRTSAVAAATARRLI 211


>gi|326330414|ref|ZP_08196722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951689|gb|EGD43721.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 382

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 32/63 (50%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     ELT RE E L  +  G  +  IA  L I+ +TV +++  I+RK     R+ AIA
Sbjct: 315 HLELLSELTARESEVLQLMVAGAPNRVIAERLVIAEDTVKSHVKQILRKLGVANRAQAIA 374

Query: 239 YAV 241
            A 
Sbjct: 375 RAA 377


>gi|326774525|ref|ZP_08233790.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326654858|gb|EGE39704.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 225

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 13/157 (8%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDVARIRIGLMLLFP 149
           L        ++  P+     +  T   +      ++       L        +  +    
Sbjct: 69  LDGTSATARIVAGPSRTRVLILTTYETDAEIERAVEAGAIGYLLKDATRDQLVEAVHSAA 128

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +G  +L  R     + A   A M +   V       LT REV+ L  +++G ++ EI   
Sbjct: 129 RGETVLAPR-----VAARLVARMRRPAPVT------LTPREVDVLGAVADGLSNVEIGRR 177

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+  TV  ++  +  K     R+ A+  A+  N++
Sbjct: 178 LVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214


>gi|182433997|ref|YP_001821716.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178462513|dbj|BAG17033.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 13/157 (8%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDVARIRIGLMLLFP 149
           L        ++  P+     +  T   +      ++       L        +  +    
Sbjct: 69  LDGTSATARIVAGPSRTRVLILTTYETDAEIERAVEAGAIGYLLKDATRDQLVEAVHSAA 128

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +G  +L  R     + A   A M +   V       LT REV+ L  +++G ++ EI   
Sbjct: 129 RGETVLAPR-----VAARLVARMRRPAPVT------LTPREVDVLGAVADGLSNVEIGRR 177

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+  TV  ++  +  K     R+ A+  A+  N++
Sbjct: 178 LVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214


>gi|159898419|ref|YP_001544666.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891458|gb|ABX04538.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 867

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A    S          L+ RE+E L  I+ G T  EI   L +S  TV  +  +I  K  
Sbjct: 788 AKRQPSVQPQTHTLERLSERELEVLQQIATGLTDREIGERLYLSMYTVKVHARNIYAKLE 847

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A+A A    ++
Sbjct: 848 VSNRTQAVARARTLGLL 864


>gi|116671544|ref|YP_832477.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116611653|gb|ABK04377.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 228

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + ++        Y + +     I   ++ +     +           L
Sbjct: 93  RFLALSVSDAAEDVVSVIRAGARGYVTKSISGTEISDAVLRVAGGDAVFSP-------RL 145

Query: 166 AAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F     D+   +   L+ RE+E +  I+ G +  E+A  L IS  TV  ++++
Sbjct: 146 AGFVLDAFGTAPADIAGDELDRLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSA 205

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK    +R     +A    ++
Sbjct: 206 VLRKLQLSSRHELTKWAAERRLL 228


>gi|311895803|dbj|BAJ28211.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 209

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 54/163 (33%), Gaps = 10/163 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +   +    +L  P      V  T   +      +            +    
Sbjct: 56  MDLQLGEGIDGVEATRRILAGPGASHVLVLTTFDTDTDISRAISAGATGYLLKAEKPE-- 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              LF   R     R      +A+      +S         +LT RE + L  + +G  +
Sbjct: 114 --ELFAAIRSAAAGRPALSPPIASRVMAQMRSP------LPQLTDREQDILDQLGQGLGN 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  ++  I  K    TRSGA+A A    ++
Sbjct: 166 KEIARALFISEATVKTHLGRIYAKLGADTRSGAVAIAKERRLL 208


>gi|307323931|ref|ZP_07603140.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890380|gb|EFN21357.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE + L  ++ G  + EIA  L IS  TV  ++  I  K   +TR+GA+A 
Sbjct: 174 RSPRPGLSERERDILRQLARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAV 233

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 234 ATERRLL 240


>gi|312199045|ref|YP_004019106.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311230381|gb|ADP83236.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 222

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +LA   A    +  V   +   L+ RE+E L  ++ G T+  +A  L ++  TV  ++ 
Sbjct: 134 AVLAPSVAATLMNR-VRTPETGPLSQRELEVLQLVAAGATNRVVAAQLFVTEATVKTHLL 192

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I  K     R+ A+A A    ++
Sbjct: 193 NIYAKLGVNDRAAAVAEAFGRGLL 216


>gi|163747623|ref|ZP_02154970.1| probable transcription regulator protein [Oceanibulbus indolifex
           HEL-45]
 gi|161379093|gb|EDQ03515.1| probable transcription regulator protein [Oceanibulbus indolifex
           HEL-45]
          Length = 241

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + +LT R+ E L  ++ G ++ EIA  L +S  TV +++  +MRK     R+ A   A
Sbjct: 165 NPDLTRRQYEVLYALANGHSNKEIARDLELSEATVKSHVRQVMRKLHVDNRTQAALLA 222


>gi|300870842|ref|YP_003785713.1| two-component system regulator [Brachyspira pilosicoli 95/1000]
 gi|300688541|gb|ADK31212.1| two-component system regulator [Brachyspira pilosicoli 95/1000]
          Length = 320

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 37/56 (66%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            DF LT RE + L+++  GKT+ EI++I  IS NTVNN++A+I  K+  K R   +
Sbjct: 259 NDFNLTKREKQILSYLLSGKTNKEISLIFDISLNTVNNHVANIYYKSGVKNRVELV 314


>gi|320008841|gb|ADW03691.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 371

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + ++L+ RE E +  IS G ++ +IA    IS  TV N+I  I  K  + +RS AIA 
Sbjct: 295 QQYQLSSREAEVMELISSGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIAR 352


>gi|302518606|ref|ZP_07270948.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302427501|gb|EFK99316.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 226

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 9/180 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK--------YYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            + +S  P  ++  + +   D             L     +    F      +       
Sbjct: 42  RLAASHLPDVVLMDIRMPGTDGLAATRHISADPALAAVHVVMLTTFEVDEYVVQSLRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFEL 186
             +     + + +   +        ++        I    A       +  V   +   L
Sbjct: 102 AGFLGKGAEPSELLGAIRTAAAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSARLAAL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TGRE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 162 TGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 221


>gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
          Length = 242

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 70/184 (38%), Gaps = 21/184 (11%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITP-----PAGMDNRYCSL 133
           P  ++  + +   + Y  +L++  E       PV     + +T           + Y S 
Sbjct: 59  PDLIISDVMMPRANGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISK 117

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW-----------EIGLLAAYQANMFKSYDVHWGK 182
            FD   +   +  +  +   +L++              +I  + +   +   +   +   
Sbjct: 118 PFDPDELAARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPTNSENKID 177

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
               T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ 
Sbjct: 178 IPSFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALE 237

Query: 243 NNIV 246
           N++V
Sbjct: 238 NHLV 241


>gi|116694767|ref|YP_728978.1| LuxR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529266|emb|CAJ95613.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16]
          Length = 901

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 3/161 (1%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++R  AL    +    LQ  TE      H     +        R   L    A + +   
Sbjct: 743 VLRATALDGMQQRDAALQEMTEALRLASH--EGFLRSFLEEGERVAVLLRAWAGVHLAQA 800

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                    +   L  +   A       +       +   LTGRE+E L  +S G  +  
Sbjct: 801 AALGVAEPFVASLLARLTD-AGSTKPAAEPPAEPAHQPDPLTGRELEVLRMLSAGYRNRV 859

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  TV +++  I  K   ++R+ A+A      ++
Sbjct: 860 IAQKLFLSELTVKSHLRRIHAKLGAQSRTEAVALGRARGLI 900


>gi|330467583|ref|YP_004405326.1| two component system response regulator [Verrucosispora maris
           AB-18-032]
 gi|328810554|gb|AEB44726.1| two component system response regulator [Verrucosispora maris
           AB-18-032]
          Length = 227

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 9/219 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D        + AL +      F+    D  Q  ++ + V  D     +R   +
Sbjct: 1   MIRVMLADDQTLVRAGLRALLQSEPDIEFVGEAADGEQTLRVAAQVRPDVLLMDIRMPRM 60

Query: 93  SEKDKYYNVLQRP-----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              +    +  RP       +    F              + +     + A +   + ++
Sbjct: 61  DGIEATRRIAARPELSDIRIVILTTFEHDQYIFRSLRAGASGFLVKDIEPAALLQAVRVV 120

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++         L+A Y A   +          +LT RE E L  I+ G T+ E+A
Sbjct: 121 AAGEALLAPSVTRR--LIAEYAARSHEPP--ASPGLDQLTAREREVLMLIARGLTNQELA 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  S  T   +++ +M K   + R   +  A    +V
Sbjct: 177 ERMSCSVATAKTHVSRVMMKLGARDRVQVVVLAYEWGLV 215


>gi|228908960|ref|ZP_04072790.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200]
 gi|228850682|gb|EEM95506.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200]
          Length = 451

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 13/252 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN +          E    T  +       D L R++ +D        +  L +     +
Sbjct: 206 MNLQGHLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLN 265

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLP 117
             +V       Q +D +     P  ++  + +   D       + Q+   +   +F T  
Sbjct: 266 --VVGLAEDGNQAID-LCGRLQPHVILMDLDMQHMDGIEATKKIKQQWPHIRILIFTTFQ 322

Query: 118 E---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +    +       + +   + +   +   + L+   G +I +    +I      + +  K
Sbjct: 323 DTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQK 378

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    +ELT RE+E L  +++G     IA  L +S  TV NY ++   K     + 
Sbjct: 379 ETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKE 438

Query: 235 GAIAYAVRNNIV 246
            A+  A+   I+
Sbjct: 439 EAVQKALEIGII 450


>gi|218673112|ref|ZP_03522781.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 96

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 154 ILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +  D + E+ G       ++    +   G    L+ RE+ CL    +G+ S+EIA  LG+
Sbjct: 2   LSSDMIVELHGRCCHIMMDLLSLDERRTGAAEALSEREIACLQLAGDGRISEEIAEKLGL 61

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S +TVN Y+ S   K  +  R  AIA A+R   +
Sbjct: 62  SVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 95


>gi|156744240|ref|YP_001434369.1| ATP-dependent transcription regulator LuxR [Roseiflexus castenholzii
            DSM 13941]
 gi|156235568|gb|ABU60351.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Roseiflexus castenholzii DSM 13941]
          Length = 1021

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 183  DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +  LT RE++ L  ++ G+T  EIA  L I+ +TV ++I  I  K   + R+ A A A  
Sbjct: 957  NEPLTAREIQVLRLLATGRTDQEIATSLVIAVSTVRSHIKRIYAKINARNRTQAAARAHD 1016

Query: 243  NNIV 246
              I+
Sbjct: 1017 LGII 1020


>gi|115379306|ref|ZP_01466417.1| response regulator receiver domain protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363688|gb|EAU62812.1| response regulator receiver domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 884

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 12/162 (7%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLL 147
            L+       V +R + +   +  +  +       +    + Y        +IR  +  +
Sbjct: 727 GLNGIQVTQRVKRRVSNVEILILTSFEDEQKVYEAIQAGASGYLVKRVGPEKIRSSIREV 786

Query: 148 FPKG---RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              G     I+  R W       Y  ++           + LT  E E L ++++G ++ 
Sbjct: 787 MEGGTVLEPIIAKRFW------NYFHSLQAKPAGKPENPWGLTPAEFEVLRYVAKGLSNA 840

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+  ++ + R TV  +++ I RK    +   A+  A++  +V
Sbjct: 841 EVGEVMTLERRTVRTHLSHIYRKMGVNSHVEAVVLALKAGVV 882


>gi|158316449|ref|YP_001508957.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111854|gb|ABW14051.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 223

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 13/221 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D           L E   A+  + V  +     +   +     P  ++  + +
Sbjct: 1   MIRVLLADDQALIRAGFRVLVE---AAADITVVAEAADGAEAVRLARETRPDVILMDIRM 57

Query: 93  SEKDKYYNVLQ-----RPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGL 144
              D      +        E+   V  T   +      +    + +     +   +   +
Sbjct: 58  PGTDGLSATRELTGDPTLNEVKVLVLTTFELDEHVFEALRVGASGFLGKGVEPDELVAAI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++     ++         L+  Y                 LT RE E +  I+ G T+D
Sbjct: 118 RVVARGDALLSPQATRH--LIEQYLRQPATPAPAVTAGLDLLTKRENEIVRLIAYGLTND 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S  TV  +    M K A + R+  +  A +  +
Sbjct: 176 EIAEQLYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTGL 216


>gi|332290267|ref|YP_004421119.1| transcriptional regulator NarP [Gallibacterium anatis UMN179]
 gi|330433163|gb|AEC18222.1| transcriptional regulator NarP [Gallibacterium anatis UMN179]
          Length = 209

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 12/131 (9%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-----LWEIGLLAAYQ-----ANMFKS 175
           +D R   LT   AR  I  ++       +L+D      L ++  +A  Q     A   + 
Sbjct: 76  IDARIAVLTVSDARSDIFALIEAGADGYLLKDTEPDTLLVQLKKIAEGQVVLSDAVKQRL 135

Query: 176 YDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            D H   D    LT RE++ L  I+ G ++ +IA  L IS  TV  +I +++RK    +R
Sbjct: 136 LDNHSANDPLQLLTDREMDVLKLIATGLSNKQIANQLFISEETVKVHIRNLLRKLNVHSR 195

Query: 234 SGAIAYAVRNN 244
             A    + + 
Sbjct: 196 VAATVLYLEHR 206


>gi|290956290|ref|YP_003487472.1| respose regulatory protein [Streptomyces scabiei 87.22]
 gi|260645816|emb|CBG68907.1| putative respose regulatory protein [Streptomyces scabiei 87.22]
          Length = 238

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE E L  ++ G  + EIA  L IS  TV  ++  I  K   +TR+GA+A 
Sbjct: 171 RSPRPALSEREHEILGQLARGLGNREIARALFISEATVKTHLGRIYAKLGVETRAGAVAV 230

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 231 AKERRLL 237


>gi|218708362|ref|YP_002415983.1| transcriptional regulator [Vibrio splendidus LGP32]
 gi|218321381|emb|CAV17331.1| transcriptional regulator [Vibrio splendidus LGP32]
          Length = 215

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+A +
Sbjct: 152 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 211

Query: 243 N 243
           N
Sbjct: 212 N 212


>gi|170758988|ref|YP_001788912.1| transcriptional regulatory protein DegU (protease production
           enhancerprotein) [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405977|gb|ACA54388.1| transcriptional regulatory protein DegU [Clostridium botulinum A3
           str. Loch Maree]
          Length = 219

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 4/134 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  +          D     +   +  +  G MLL P+  + +      I      +  
Sbjct: 90  IFKPIKYGADGYLLKDAGSEYIIEAIKSVYNGAMLLDPEVTVKVVKAFNSI----TEKTQ 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F +++    +   LT RE E    +S+GK++ +I  IL ++  TV NY+  I+ K    
Sbjct: 146 SFTNFNKIKYELDALTPREREVAKLVSQGKSNKDICNILFLTEGTVKNYVTRILEKLELN 205

Query: 232 TRSGAIAYAVRNNI 245
            R+    +  ++ +
Sbjct: 206 NRTELALFINQDGL 219


>gi|86147858|ref|ZP_01066164.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|85834385|gb|EAQ52537.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
          Length = 215

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+A +
Sbjct: 152 NVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 211

Query: 243 N 243
           N
Sbjct: 212 N 212


>gi|289642055|ref|ZP_06474208.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508128|gb|EFD29074.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 259

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  LT R+ E L  +++G ++ EIA  L ++  TV +++ +++R+   + R+    YA
Sbjct: 188 GLDIHLTQRQREVLELVADGLSNAEIAARLFVTEATVKSHLTAVLRRLDLRDRTQLAIYA 247

Query: 241 VRNNI 245
            R  I
Sbjct: 248 HRGRI 252


>gi|302557670|ref|ZP_07310012.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
 gi|302475288|gb|EFL38381.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
          Length = 222

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D     L   V     G  L+ P   + L   L E   +    A 
Sbjct: 93  VYGALRGGAAGFVLKDAGPALLIEAVRAACNGEALVSPSVTLRLLKHLNESQAMPRGGA- 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +  EL+GR +E +  I+ G+T+ EIA  L IS +TV ++++ I  K   +
Sbjct: 152 ---------ARSSELSGRALEVVQAIARGRTNQEIAAELFISLSTVKSHLSGIQTKLGVR 202

Query: 232 TRSGAIAYAVRNNIV 246
            R+    +A  N +V
Sbjct: 203 NRTEIAVWAWENRVV 217


>gi|309812367|ref|ZP_07706122.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
 gi|308433672|gb|EFP57549.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
          Length = 237

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 3/153 (1%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +  D    ++    E+   V             +            +      L+     
Sbjct: 87  NGADATSAIMLTLAEVKVLVLSASSARSDVLDAVKVGASGYLL---KSASAAELVDAVEA 143

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +  D ++   L     A++    D        LT RE E L  +++G  S +IA  LG+
Sbjct: 144 TLRGDAVFTPELAGLVLAHLRGRVDTTDDPASALTPRESEVLRMVAKGLASKQIASRLGL 203

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV+N++A+ +RK     R     +A+ N +
Sbjct: 204 SSRTVDNHVAATLRKLHLANRVELTRFALENGL 236


>gi|289704669|ref|ZP_06501097.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558623|gb|EFD51886.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 209

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 16/166 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
            DL     +        V +R      L    F T  + +         Y         I
Sbjct: 56  MDLQMGAGMDGVTATRAVRERWPGVQVLILTTFDTEADILAAVNAGAAGYLLKDAPSEEI 115

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +       + +         + A     M    +V       L+ RE+E L  I+ G
Sbjct: 116 ASAVRQAAAGRKALAP------QVAATLMGRMSGGSEV-------LSEREIELLELIARG 162

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+   A  L IS  TV  ++  I +K     R+ A+  A R  I+
Sbjct: 163 ATNKMAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208


>gi|239933481|ref|ZP_04690434.1| two component system DNA binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291441852|ref|ZP_06581242.1| two component system DNA binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291344747|gb|EFE71703.1| two component system DNA binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
          Length = 211

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  +     D  LT RE E L  +++G ++  +   L ++  TV +++A I  K    +R
Sbjct: 137 RLMNRLRTPDTALTRRETEVLALVADGLSNQAVGNRLHLTEGTVKSHLARIYAKLNVDSR 196

Query: 234 SGAIAYAVRNNIV 246
           + A+A A    ++
Sbjct: 197 TAAVATATDLGLI 209


>gi|228958760|ref|ZP_04120472.1| Response regulator receiver [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800899|gb|EEM47804.1| Response regulator receiver [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 537

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L    F              + Y   + D   +   + L++  G +I  D L+     
Sbjct: 399 RVLILSTFQNTERAKEIIRNGADGYVLKSIDSRELAESIRLVYRGGAMITHD-LFHRMWE 457

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +  +F+S     G ++ LT RE+E L  +S+G     IA  L +S  TV NY +++ 
Sbjct: 458 ENKETGLFESRSD--GIEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLY 515

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   K R  A+  A    ++
Sbjct: 516 EKLGVKNREEAVQKAKDIGLL 536


>gi|124265956|ref|YP_001019960.1| ATP-dependent transcriptional regulator-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258731|gb|ABM93725.1| ATP-dependent transcriptional regulator-like protein protein
           [Methylibium petroleiphilum PM1]
          Length = 919

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
           D     L    AR++     L P+ R     +    G LAA+ A   ++         + 
Sbjct: 802 DGLGSLLLEPPARLQALWQALAPRLRCPAAAQARLRGRLAAWLAEGPRAAVADAAPPDDP 861

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E +  ++EG+++  IA  LG+S +TV  ++A+I+ K A  +R+ A AY  R 
Sbjct: 862 LSAREREVMALLAEGQSNKLIARALGLSLHTVKRHVANILTKLALDSRTQAAAYWHRR 919


>gi|116694705|ref|YP_728916.1| LuxR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529204|emb|CAJ95551.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16]
          Length = 920

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E + L  ++EG ++  +A  L +S  TV  ++ +I  K     R+ A+A A +  
Sbjct: 859 PLTPKEQKVLQLLAEGYSNVAMAERLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLG 918

Query: 245 IV 246
           ++
Sbjct: 919 LL 920


>gi|325918348|ref|ZP_08180482.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325535427|gb|EGD07289.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 922

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L      +   L    P         L    LL     +   + DV        + RE+E
Sbjct: 802 LGLPAKAMLRSLRQHDPHTVGGTTRALTIQALLERLSGDEDPASDV-------FSERELE 854

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G ++ +IA  L +S+NTV  ++ ++ RK   ++R  A+A A++  ++
Sbjct: 855 VLAQLARGYSNKQIARHLHLSQNTVKFHLKNLYRKLDARSRESALAQALQRGVL 908


>gi|114764692|ref|ZP_01443877.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542892|gb|EAU45913.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 214

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 16/163 (9%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAG-MDNRYCSLTFDVARIRIG 143
           +    L+       +L++  E    V   H  PE I+   G     Y         I+  
Sbjct: 58  LNMPGLNGLSATEMILEQRPETRILVLSMHDTPEYISNALGHGAMGYVLKDVPTDEIKRA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +       +               V  G   +LT RE   L  +++GK++
Sbjct: 118 IDAVMSGERYLCTGAEGAL-------------RPVMSGGREQLTNREQTVLLQLAQGKSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 165 KEVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|332664117|ref|YP_004446905.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332931|gb|AEE50032.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 211

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKD 183
           +     L F + R   G  L      + L + + EI   G                   D
Sbjct: 89  EREDEDLVFHMLRAGAGGFLTRDVSPLKLLEAIREIQDGGAPMTMNVARLVVASFFKNND 148

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L+W++ GK+  +IA IL + + TV ++I +I  K    +++ AI  A   
Sbjct: 149 SLLTPREREVLSWMARGKSYTQIAEILFVDKETVRSHIKNIYGKLEVHSKADAIEKATLE 208

Query: 244 NIV 246
            ++
Sbjct: 209 KLI 211


>gi|198276206|ref|ZP_03208737.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135]
 gi|198271018|gb|EDY95288.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135]
          Length = 213

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +     ++ +  +    +   LT  E E L  ++ GK++ EIA    +S  TV  +  
Sbjct: 123 QFVCGKAKDLLREEEKEQNRMAPLTQTEKEILRAMALGKSTKEIAAERFLSIYTVATHRK 182

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I RK        AI YA+R  IV
Sbjct: 183 NIFRKLEVNNAHEAIRYALRAGIV 206


>gi|2873371|gb|AAC38168.1| CarR [Serratia marcescens]
          Length = 244

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 164 LLAAYQANMFKSYDVHWGKDFEL--------TGREVECLTWISEGKTSDEIAVILGISRN 215
           LL        K      GK   L        T RE E L  +S G T  E++  LGIS  
Sbjct: 139 LLVTTHEKAMKHKHFVKGKTAPLDCLQSALITPRETEVLFLVSRGNTYKEVSRTLGISEA 198

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TV  +I + +RK        AI+ A+  N+
Sbjct: 199 TVKFHINNSVRKLNVINSRHAISKALELNL 228


>gi|317049077|ref|YP_004116725.1| LuxR family two component transcriptional regulator [Pantoea sp.
           At-9b]
 gi|316950694|gb|ADU70169.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           At-9b]
          Length = 210

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +     G +L   +  ++L+  L       + +        +         ELT RE++ 
Sbjct: 98  IDAGADGYLLKDSEPELLLQQILSGAQGETVFSEVVEEYLANRPHSANPFRELTERELDV 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L  ++ G ++ EIA  L IS  TV  +I +++RK   ++R  A  
Sbjct: 158 LQEVARGLSNKEIATTLHISEETVKVHIRNLLRKLDVRSRVAATV 202


>gi|291298491|ref|YP_003509769.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567711|gb|ADD40676.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 134

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDFELTGREV 191
           +AR  + ++      R +    +    LL    A        K   +       L+ RE 
Sbjct: 19  IARSAVHIVREARASRRLEPLSIDGRMLLHGLAALGIDLEPPKPTPLRANLQHNLSEREH 78

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  I+ GK++ EI   L ++ +T+  +     RK   + R+ A+A A R NI+
Sbjct: 79  QVLLGIAGGKSNAEIGRELYVTEDTIKTHARRAYRKLGARDRAHAVALAFRQNIL 133


>gi|50120496|ref|YP_049663.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49611022|emb|CAG74467.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 245

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 30/198 (15%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD--------- 127
           ++ S++P + V     +       V+        P   +  +NI   + +          
Sbjct: 45  VIISNYPQEWVDTYKENNYQHIDPVILTAINTVSPF--SWEDNIVINSKLKFSKIFNLSK 102

Query: 128 -----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-------IGLLAAYQA----- 170
                N Y  +  D       L ++F +      + + E       + L+A ++      
Sbjct: 103 EYDIVNGYTFVLHDNNNHLAALSIMFEEHAPTDMESIVEENKDKLQMLLIATHEKITTLY 162

Query: 171 -NMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             M +S       D E  + RE E L W S GKT  EIA+IL I  +TV  +I ++++K 
Sbjct: 163 KEMTQSPQSKKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKL 222

Query: 229 ATKTRSGAIAYAVRNNIV 246
                  AI   V   ++
Sbjct: 223 GVLNAKHAIRLGVELQLI 240


>gi|315182035|gb|ADT88948.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC
           11218]
          Length = 207

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           +L D +W    LA      +++    V      +LT RE + +  +  G ++ EIA  L 
Sbjct: 109 VLEDEMWLTRKLAQEYIMHYRAGAPAVTSQAYTKLTRREQQIIKLLGSGASNIEIADKLY 168

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 169 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 201


>gi|302555046|ref|ZP_07307388.1| luxR family two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472664|gb|EFL35757.1| luxR family two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 233

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  I +G T+ EI   L +S  TV N+I+ ++ K   + R  A   A
Sbjct: 165 LSPREREILALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAVLA 219


>gi|33636170|emb|CAE45182.1| putative ExpR protein [Pectobacterium atrosepticum]
          Length = 245

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 16/192 (8%)

Query: 63  LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           + + + +Q+  +D +V +      PF     + +S + K   +     E      H +  
Sbjct: 57  IYQANNYQQ--IDPVVIAALNKITPFPWDEDLLVSTQLKMSKIFNLSRE------HNITN 108

Query: 119 NIT-PPAGMDNRYCSLTFDVARIRIGLML-LFPKGRIILRDRLWEIGL--LAAYQANMFK 174
             T      +N    L+  +    +  +  +    +  L+  L  I    ++ Y+  +  
Sbjct: 109 GYTFVLHDHNNNLVMLSIMIDESNVNNIDDVIESNKDKLQMTLMNIHAETISLYREMIRS 168

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D         + RE E L W S GKT  EIA+IL I   TV  +I ++++K       
Sbjct: 169 KEDERSNDKDIFSQRENEILYWASMGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAK 228

Query: 235 GAIAYAVRNNIV 246
            AI   +   ++
Sbjct: 229 HAIRLGIELQLI 240


>gi|51893491|ref|YP_076182.1| hypothetical protein STH2353 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857180|dbj|BAD41338.1| conserved domain protein [Symbiobacterium thermophilum IAM 14863]
          Length = 611

 Score = 85.4 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E L  +++G ++ EIA  L +S  TV  +++ I++K     R+ A  +
Sbjct: 552 LTQREREVLAHVAQGLSNREIAARLFLSEATVKTHVSRILQKLGLPDRTKAAVF 605


>gi|302867778|ref|YP_003836415.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315505818|ref|YP_004084705.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570637|gb|ADL46839.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412437|gb|ADU10554.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 208

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 12/164 (7%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---D 136
           P  +V  + +   D       +L         V  T  ++      +    C        
Sbjct: 48  PDVVVMDLRMPGVDGITATSRILADRPATRIMVLTTFGDDDHLYPALTAGACGFLLKDAP 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +  G+            D L  +            +      +  +LT RE + L  
Sbjct: 108 PADLLDGVRRAAAGDSPFSPDVLRRL------VERAVHARAGAPRRTADLTAREQDVLDL 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +++G ++ EIA  L I   TV  +I S+M KT +  R     +A
Sbjct: 162 VADGLSNTEIADRLHIGVTTVKTHITSLMTKTGSANRVRLALWA 205


>gi|229819768|ref|YP_002881294.1| LuxR family transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565681|gb|ACQ79532.1| transcriptional regulator, LuxR family [Beutenbergia cavernae DSM
           12333]
          Length = 967

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++G ++ +I   L IS  TV+ +I++++ K     R+ A+  A R  +
Sbjct: 903 LTDRERDVLRLVADGLSNRQIGERLYISPKTVSVHISNLLAKLGVARRAEAVDVAHRRGL 962

Query: 246 V 246
           +
Sbjct: 963 L 963


>gi|282865307|ref|ZP_06274359.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282559780|gb|EFB65330.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 381

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 37/78 (47%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
            +   +   ++   S    WG   EL+ RE E +  I+ G T+ +IA    IS+ TV N+
Sbjct: 290 SLAQPSVAHSSSGTSVPAAWGLVDELSEREREVMGLIASGMTNQQIAATCFISQKTVKNH 349

Query: 221 IASIMRKTATKTRSGAIA 238
           I  I  K    +R  AIA
Sbjct: 350 INRIFAKLNAGSRGEAIA 367


>gi|256421144|ref|YP_003121797.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036052|gb|ACU59596.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 210

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           + F+   V      EL+ RE E +  ++EG  +  I+  L IS +TV  +  +IM K   
Sbjct: 135 DYFRGKSVGKSGLQELSEREKEIIKCLAEGMNTKAISSSLYISEHTVKTHRRNIMHKLNV 194

Query: 231 KTRSGAIAYAVRNNIV 246
           KT +  I  A+   I+
Sbjct: 195 KTSAELIRLAIDKGII 210


>gi|218679157|ref|ZP_03527054.1| LuxR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 265

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 67/199 (33%), Gaps = 21/199 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           +Y     +   R D  Q+  L S     W +D          D    + +  ++   PV 
Sbjct: 69  DYWFNHGYF--RIDPVQQVALRSTAPFFWNYD---------TDADTLIKRFMSDDTAPVA 117

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQA 170
             L E              +            + F +     R  L  I    LLA    
Sbjct: 118 RYLNERDM----STGVTVPVHMPRGDYATVTGIRFGRNDDFERYALRYIADFNLLAHVFH 173

Query: 171 NMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
               S      K      LT RE ECL   +EG ++ EI+ I+G S  TV  ++ +  +K
Sbjct: 174 ETAYSLFDKTAKSVGTVRLTERERECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKK 233

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+ A+  A    ++
Sbjct: 234 LGARNRTQAVVRATHYRLL 252


>gi|163755204|ref|ZP_02162324.1| response regulator [Kordia algicida OT-1]
 gi|161324624|gb|EDP95953.1| response regulator [Kordia algicida OT-1]
          Length = 213

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 65/168 (38%), Gaps = 11/168 (6%)

Query: 84  FDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
              +  +++ E D           +    +     H   + I        +   L     
Sbjct: 50  HVFILDISMPEMDGLVVLDTLKEEKLSQNVLMLTMHDQAKYIKKAIEKGAKGYVLKSTSK 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            + +  +     G      RL EI L  + ++   ++  V      +LT RE++ L  I+
Sbjct: 110 TMLVEAIQKVYNGENFYDPRLTEILLNTSEESKNKQATHV------KLTPREIDILKLIA 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + K + EIA +L IS NTV ++  ++  K    + S  + YA+++  +
Sbjct: 164 QNKKTKEIAELLFISVNTVQSHKKNLYSKLNIHSVSELVTYAIQHKFI 211


>gi|111222400|ref|YP_713194.1| putative sensory transduction protein [Frankia alni ACN14a]
 gi|111149932|emb|CAJ61626.1| Hypothetical sensory transduction protein [Frankia alni ACN14a]
          Length = 232

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           LL  +   +          D  L   T RE+  L  ++ G ++ EIA  L +S  TV  +
Sbjct: 134 LLDTFAHRLPDPDSPRAPADPRLARLTDRELVVLGEVAAGHSNAEIAAHLVLSEATVKTH 193

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +  I+ K   + R  A+ +A    +V
Sbjct: 194 VGRILAKLELRDRVQAVVFAYETGLV 219


>gi|319791965|ref|YP_004153605.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594428|gb|ADU35494.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 237

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 14/129 (10%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           E       ++     +   VAR  +GL+    K R I   R   +               
Sbjct: 122 ELSFLLRSIERGGAPMDSRVARRILGLIAASAKTRTIEPIRTVPLA-------------- 167

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   L+ RE++ L  I++G ++ +IA  + +S NT+  +  SI RK A K+R+ A+
Sbjct: 168 EPPSAPARLSPRELKVLRLIAQGWSNRQIAEAVYLSVNTIEFHAKSIYRKLAVKSRTQAV 227

Query: 238 AYAVRNNIV 246
             A+++ ++
Sbjct: 228 HEAMQHGLL 236


>gi|308187717|ref|YP_003931848.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans
           C9-1]
 gi|308058227|gb|ADO10399.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans
           C9-1]
          Length = 209

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 20/131 (15%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----------------LAAY 168
           G+ +R   LT   AR  I  M+       +L+D   EI L                +A Y
Sbjct: 77  GISSRILVLTVSDARSDIFAMVDAGADGYLLKDSEPEILLGHILQASQGEKVFSEGVARY 136

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            AN   S D       +LTGRE + L  ++ G ++ EIA  L IS  TV  +I +++RK 
Sbjct: 137 LANRQHSADPLR----QLTGRECDVLQEVARGLSNKEIAANLHISEETVKVHIRNLLRKL 192

Query: 229 ATKTRSGAIAY 239
             ++R  A   
Sbjct: 193 DVRSRVAATVM 203


>gi|297191143|ref|ZP_06908541.1| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197723336|gb|EDY67244.1| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 282

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
            PPA  D         V  +   L  L P+   I    L E  L A  +     S     
Sbjct: 159 GPPATGDAVGRRDWETVREVHGELRALAPR---ITDRALREELLAACARLAPGPSTPAPT 215

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE++ L  ++ G T+   A  LG+   TV  Y+ S MRK   +TR  A+  A
Sbjct: 216 NGGVSLTPRELDVLGCVASGATNATAAERLGLRPETVKAYLRSAMRKLGARTRLEAVVAA 275

Query: 241 VRNNIV 246
            R  ++
Sbjct: 276 RRAGLL 281


>gi|119717710|ref|YP_924675.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538371|gb|ABL82988.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 229

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 14/180 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +V    P  ++  + + + D      Q    E        +   +     +D+R  +   
Sbjct: 50  LVEELEPDVVLMDIRMPDMDGVEATRQIFLPERAARRQRPVRVVVLTTFNLDDRAATAIR 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGL---------LAAYQANMFKSYDVHWGKDFEL 186
             A       LL     ++L D +  +           L        +S          L
Sbjct: 110 HGASG----FLLKGTTPVMLADAIRTVHAGNAVLAPTDLTTLLDGRLRSQAPLPPAYLTL 165

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T +E E  T ++ G ++ EIA ++ +S +TV  ++ +I+RK   + R   + +A  + +V
Sbjct: 166 TDKEREVFTAVARGLSNTEIAGLVFLSESTVKTHVGAILRKLGLRDRVQIVVFAYEHGLV 225


>gi|83312959|ref|YP_423223.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947800|dbj|BAE52664.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 225

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 20/199 (10%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT-----E 107
            + VG +   +    L  + K D I+  D     +  M +    K  N   R       +
Sbjct: 41  IDVVGEADDGVAALHLIDDAKPDLIIL-DLSMPGLDGMDIIPLVKRRNPASRIVVLTGTQ 99

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
               +       +         +  L   +     G   + P   +++           +
Sbjct: 100 DGTTMKRAFALGVDAYTLKTGGWQDLETAIGEAMAGRRYISPSAGLVVDGGEEGGLAAGS 159

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A               L+GRE + L  ++EG T+ ++A ILGIS  TV+ +  +IM K
Sbjct: 160 AVA--------------PLSGRERQVLKLLAEGYTNQKVAGILGISVKTVDRHRENIMNK 205

Query: 228 TATKTRSGAIAYAVRNNIV 246
              +T     A A+R  +V
Sbjct: 206 LGVRTPVALAAIALREGLV 224


>gi|46310121|gb|AAS87341.1| putative regulatory protein [uncultured gamma proteobacterium]
          Length = 233

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 2/133 (1%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
                 V      +   PA M++      FD  +    L +   +GR+   +R  E  LL
Sbjct: 101 VPRATLVASEFYNDFLRPADMEHGLNVFFFDGNQDVADLRIWRGRGRVPFSER--EEQLL 158

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +    K++     +   L+ RE E +  ++ G +  E+A  LGIS  TV  ++ + M
Sbjct: 159 LTLEPYFLKAFCTVPKQRQALSLREAEVVRLVAGGASDKEVARALGISFTTVRTHLKNAM 218

Query: 226 RKTATKTRSGAIA 238
            K   + R+    
Sbjct: 219 AKLDCRNRTQLAR 231


>gi|296112985|ref|YP_003626923.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis RH4]
 gi|295920679|gb|ADG61030.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis RH4]
 gi|326574060|gb|EGE24009.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis CO72]
          Length = 218

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 82/236 (34%), Gaps = 31/236 (13%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +    +  R   V   P     LA ++ L+  V              A+H +     L Q
Sbjct: 5   IFTAANPARLLLVDDHPMLRRGLADLLSLEKDVEVI---------AEANHGMEALDILNQ 55

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-----PVFHTLPENITPPAG 125
           E  +  +V  D    ++  +   +K +   +  +            V   L   +     
Sbjct: 56  E--IVDLVILDHTMPILNGIETLKKIRELGIQTKVLLFTVSDNSKDVQDALHLGVDGYLL 113

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
            D     +  D+ +I  G +++ P    IL   + +                V      E
Sbjct: 114 KDMEPEQIITDIRKILCGELVISPSLAPILAQAMRKP---------------VKTDSSHE 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE++    I++G ++  I   LGI+ +TV  ++  I+ K   +TR     +AV
Sbjct: 159 LTEREIQVAKMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAVWAV 214


>gi|295838240|ref|ZP_06825173.1| two component transcriptional regulatory protein devr [Streptomyces
           sp. SPB74]
 gi|295826930|gb|EDY45148.2| two component transcriptional regulatory protein devr [Streptomyces
           sp. SPB74]
          Length = 155

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
             R C       R  +       + R     R    G      A+  ++ +         
Sbjct: 32  SMRACGGRPPTPR-ALPSPATHGRRRAPGNSRRRRTGPAGRVMAHFARTGNTLQSSPEGL 90

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  + EG ++ EIA  L I+  TV ++++ I+ K   ++R  A      +
Sbjct: 91  DRLTDRERDVLDCLGEGLSNQEIAHRLYITEATVKSHVSHILAKLGVRSRVQAAILVQDH 150

Query: 244 N 244
            
Sbjct: 151 G 151


>gi|254444034|ref|ZP_05057510.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198258342|gb|EDY82650.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 209

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+E L  + +G+ + EIA  LGI+  TV  ++ ++  K     R+ A   AV   +
Sbjct: 145 LTAKELEILELVVQGRRNKEIAADLGITEFTVKGHLKTVFLKLQVSDRTEAAIKAVSEGL 204

Query: 246 V 246
           V
Sbjct: 205 V 205


>gi|84498640|ref|ZP_00997397.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
 gi|84381037|gb|EAP96923.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
          Length = 215

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNT 216
           ++   G   A      +      G D+E LT RE E L   ++G ++ EIA    +S  T
Sbjct: 126 QVVAAGATRAVFERFRERATATPGADYERLTPREREILLRAAQGLSNAEIAAAEFLSEAT 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  +++ I+ K A + R   + YA  + ++
Sbjct: 186 VKTHVSRILGKLALRDRVQLVVYAYEHGLL 215


>gi|84394370|ref|ZP_00993090.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|84374999|gb|EAP91926.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
          Length = 229

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+A +
Sbjct: 166 NVDLTIRELQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQ 225

Query: 243 N 243
           N
Sbjct: 226 N 226


>gi|325977332|ref|YP_004287048.1| response regulator gacA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177260|emb|CBZ47304.1| Response regulator gacA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 227

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 6/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NR 129
             + +  P  ++  + + + D       V +    +   +  T  ++    + +      
Sbjct: 41  ETLPTSKPDVILMDIRMPKMDGVLCTKAVKENYPNIKVIILTTFDDDDFIYSALKYGATG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      +  +   ++       +I  D   ++  L +  A    +  V      +++  
Sbjct: 101 YMLKGTSMDDLHDAVVTANEGRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKM 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E   +  I  G ++ EIA  L +S  TV NY+++I+ K   + R+    +AV+  +
Sbjct: 161 EWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTGV 216


>gi|189468407|ref|ZP_03017192.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM
           17393]
 gi|189436671|gb|EDV05656.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM
           17393]
          Length = 209

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 39/77 (50%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A      + H   + +L+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K  
Sbjct: 128 ATAHPCGNPHADSEHDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLG 187

Query: 230 TKTRSGAIAYAVRNNIV 246
            K+ +G   YAV +  V
Sbjct: 188 IKSVAGLTIYAVMHGYV 204


>gi|73538584|ref|YP_298951.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
 gi|72121921|gb|AAZ64107.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
          Length = 913

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +S G  +  IA  L +S  TV +++  I  K   + R+ A+A      +
Sbjct: 852 LTARELEVLQMLSAGLRNRAIAEKLFLSELTVKSHLRKINAKLGAQNRTEAVAIGRSRGL 911

Query: 246 V 246
           +
Sbjct: 912 I 912


>gi|88855696|ref|ZP_01130359.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88815020|gb|EAR24879.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 225

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 11/217 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++  D        +  L +   A   + V  +    Q+   +  S  P   +  + 
Sbjct: 1   MTIRVLIADDQELVRTGLRTLLD---AQDGIEVVGEAADGQEALDLAQSLRPDVCLFDIR 57

Query: 92  LSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   D            ++ P  +       L E +        R   L    + +    
Sbjct: 58  MPRVDGIEATRILAGAGVENPMAIVVITTFDLDEYVYGALRAGARGFLLKDAGSALLGQA 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +     G  ++      + LL A+        +        LT RE E L  ++ G ++ 
Sbjct: 118 IRCAANGDALIAPN-VTVRLLEAFAGQPSPVGEPIAQPTEPLTAREEEVLATVARGLSNS 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           EIA  L I+ +TV  ++AS+M K   + R     +++
Sbjct: 177 EIASELHITVSTVKTHLASLMTKLGVRNRVEIAIWSL 213


>gi|225022693|ref|ZP_03711885.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682229|ref|ZP_07405033.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
 gi|224944601|gb|EEG25810.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658702|gb|EFM48205.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 223

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +     +   +   + L++    ++       +  L   +     +         ELT R
Sbjct: 98  FLLKDVEPEELFDAIRLVYDGQAVLAPTATAHV--LELLKHPNQPAAPTPSPAVAELTPR 155

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E   L  I+ G T+ EIA    +S  TV  ++  I+ KT ++ R  A+ +A R  +V
Sbjct: 156 ETVILRLIALGLTNQEIADHEYVSMATVKTHVRHILMKTNSRDRVHAVLFAYRTGVV 212


>gi|194291367|ref|YP_002007274.1| transcriptional regulator LuxR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225271|emb|CAQ71213.1| Putative Transcriptional Regulator, LuxR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 918

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E + L  ++EG ++  +A  L +S  TV  ++ +I  K     R+ A+A A +  
Sbjct: 857 PLTPKEQKVLHLLAEGYSNVAMAERLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLG 916

Query: 245 IV 246
           ++
Sbjct: 917 LL 918


>gi|311031417|ref|ZP_07709507.1| germination protein [Bacillus sp. m3-13]
          Length = 64

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 2   LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 60


>gi|307296354|ref|ZP_07576181.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878156|gb|EFN09379.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 250

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           Y        R+   L L+    R++   L D L     L      + +  D        L
Sbjct: 105 YIVKEISCDRLVATLRLVAMGERVLPPQLADELQSRPSLT-DALEVERPVDAAC-----L 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + RE+E L W+  G  +  I+  + IS  TV  ++ +++RK   K R+ A  +A  + 
Sbjct: 159 SDRELEILRWLIMGCPNKVISKRMNISEATVKVHVKAVLRKLRVKNRTQAAIWAANHG 216


>gi|325964863|ref|YP_004242769.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470950|gb|ADX74635.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 217

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192
            V     G ML       I +  L       +LA   A +  +   + G    LT REV+
Sbjct: 101 AVEAGASGYMLKDAPPEQIRQAVLAAAAGETVLAPRAAALLMNRISNPG--TSLTPREVQ 158

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G ++  IA  + IS  TV  ++  I  K     R+ AIA A +  I+
Sbjct: 159 LLELLATGLSNRAIAKQVFISEATVKTHLVHIYGKLGVDNRTAAIAAATQRRII 212


>gi|312197458|ref|YP_004017519.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228794|gb|ADP81649.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 206

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 41/96 (42%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I   R      +        +       K   L  RE E L  ++EG T+ +I
Sbjct: 108 LIGAIRTIAAGRSLLDPAVTQRVLTRLREGPTQDPKLAALGTREREILHLVAEGLTNRQI 167

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           A  + +S  TV NY++SI+ K    +R+ A  +A R
Sbjct: 168 ASRIHLSEKTVKNYVSSILVKLELTSRTQAAVFAAR 203


>gi|306830368|ref|ZP_07463538.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304427393|gb|EFM30495.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 227

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 6/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NR 129
             + +  P  ++  + + + D       V +    +   +  T  ++    + +      
Sbjct: 41  ETLPTSKPDVILMDIRMPKMDGVLCTKAVKENYPNIKVIILTTFDDDDFIYSALKYGATG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      +  +   ++       +I  D   ++  L +  A    +  V      +++  
Sbjct: 101 YMLKGTSMDDLHDAVVTANEGRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKM 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E   +  I  G ++ EIA  L +S  TV NY+++I+ K   + R+    +AV+  +
Sbjct: 161 EWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTGV 216


>gi|260769964|ref|ZP_05878897.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972]
 gi|260615302|gb|EEX40488.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972]
          Length = 223

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           +L D +W    LA      +++    V      +LT RE + +  +  G ++ EIA  L 
Sbjct: 125 VLEDEMWLTRKLAQEYIMHYRAGAPAVTSQAYTKLTRREQQIIKLLGSGASNIEIADKLY 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S NTV  ++ ++ +K   K R  A+ +A +NNI
Sbjct: 185 VSENTVKTHLHNVFKKINAKNRLQALIWA-KNNI 217


>gi|307313911|ref|ZP_07593526.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|306899185|gb|EFN29823.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 254

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 165 LAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           LAA +    +  D+    DF    LT RE + L  I  G  +  IA  LG+S NTV  ++
Sbjct: 161 LAAQKQASSEDIDLERKIDFGQDLLTMRETQVLDLICVGMQNKIIADRLGLSENTVKVHV 220

Query: 222 ASIMRKTATKTRSGAIAYAVR 242
            +I +K   + R+ A A   R
Sbjct: 221 RNIYKKMNVRNRTEAAARYFR 241


>gi|281415470|ref|ZP_06247212.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 202

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 16/166 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
            DL     +        V +R      L    F T  + +         Y         I
Sbjct: 49  MDLQMGAGMDGVTATRAVRERWPGVQVLILTTFDTEADILAAVNAGAAGYLLKDAPSEEI 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +       + +         + A     M    +V       L+ RE+E L  I+ G
Sbjct: 109 ASAVRQAAAGRKALAP------QVAATLMGRMSGGSEV-------LSEREIELLELIARG 155

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+   A  L IS  TV  ++  I +K     R+ A+  A R  I+
Sbjct: 156 ATNKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 201


>gi|89896875|ref|YP_520362.1| hypothetical protein DSY4129 [Desulfitobacterium hafniense Y51]
 gi|89336323|dbj|BAE85918.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 215

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 147 LFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L    R + R  ++ +  L      +M+     +      LT RE E L +I+ G T+ E
Sbjct: 113 LLQAIRDVARGEIYLDSSLAQNLVKSMYSPRKDNNRSASNLTEREKEVLRYIALGYTNKE 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   L +S  TV  + A IM K     RS  + YA+    +
Sbjct: 173 IGESLSVSVKTVETHKARIMEKIQCHKRSDLVRYAIEQGYI 213


>gi|300779699|ref|ZP_07089555.1| LuxR family DNA-binding response regulator [Corynebacterium
           genitalium ATCC 33030]
 gi|300533809|gb|EFK54868.1| LuxR family DNA-binding response regulator [Corynebacterium
           genitalium ATCC 33030]
          Length = 198

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 18/166 (10%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARI 140
           +V  + +   D      +   E   PV       T  + +         Y         +
Sbjct: 46  VVSDIQMPGVDGIELTRRLVAEGGPPVLILTTYDTQADVVAAMEAGAMGYLLKDAPEDEL 105

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++    + R +       +              +     D  L+GRE+E L  +  G
Sbjct: 106 HDAVVAAAQRERTLSPQVANTLA-------------ERVLKPDEALSGREIELLKALQTG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L IS+ TV  ++  I  K     R+ A+  A    I+
Sbjct: 153 MSNREIAEALFISQATVKTHLIHIYAKLGVDNRTAAVDKARERRII 198


>gi|238898715|ref|YP_002924396.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466473|gb|ACQ68247.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 235

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 66/182 (36%), Gaps = 14/182 (7%)

Query: 69  FQEQKLDSIVSSDWP----FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           F  Q +D +V         F+    + +S K     VL +         HT         
Sbjct: 57  FNHQLIDPVVIKALSRVEDFEWDENILISSKLALPKVLDQAKTYDISRGHTF----VLHD 112

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N      FD   ++     +  +   +L        LL+ Y+      +++   K+ 
Sbjct: 113 YKQNLAILSIFDDRPLKTNDFFIDREKMYLL-LVKTHQKLLSLYE-----KFEIPTKKNI 166

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L W S GKT  EI+ I+GI   ++  ++ +I  K        AI  A    
Sbjct: 167 GLSKRENEILHWASIGKTYQEISKIIGIKECSIKFHMKNITNKLGAINSRHAIKLAYELK 226

Query: 245 IV 246
           ++
Sbjct: 227 LL 228


>gi|256822428|ref|YP_003146391.1| two component LuxR family transcriptional regulator [Kangiella
           koreensis DSM 16069]
 gi|256795967|gb|ACV26623.1| two component transcriptional regulator, LuxR family [Kangiella
           koreensis DSM 16069]
          Length = 212

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 17/221 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D        + +L     A   ++       E    ++ +   P   V  +++
Sbjct: 1   MIRVMLADDHTILRQGLVSLLSK-DADCTVVAEASNGLEAVEKALETR--PQVAVIDISM 57

Query: 93  SEKDKY------YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            E +        ++ L     L   +       I       + Y         +   +  
Sbjct: 58  PELNGMEVVKRIHDKLPECKILVLTMHEEQEYVIHMVRAGASGYLLKDSASEELIDAVKA 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDE 205
           L        +         A+  A  +   D  W   ++ LT RE E    + +GKT+ +
Sbjct: 118 LATGKTYYSQ-------YAASVLATQYSQPDKEWQDPYKNLTQREREVFHLVVDGKTTKD 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS  T  N+   ++ K      +  + YA ++N++
Sbjct: 171 IARTLDISVKTAENHRGKVLDKLGVSNTAELVRYAAKHNLL 211


>gi|269962780|ref|ZP_06177121.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832470|gb|EEZ86588.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 222

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 16/182 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+  D +V +     ++   ++   + +   ++            L ++I      D   
Sbjct: 40  EKLADYVVPALPVPAILLDYSVITDEVFSRYMEFKK-------AELKDSIEVLLNCDKTI 92

Query: 131 CSLTFDVARIRIGLML-------LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
            +    V +   G+         L      +L+  +W     +       + +     K 
Sbjct: 93  STEELFVWQTLAGIFYTSDDITTLQVGIGKVLQGDMWFSRKFSQQYITHLRRHSRPVNKS 152

Query: 184 FE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE + +T++S G ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A 
Sbjct: 153 VSAILTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAK 212

Query: 242 RN 243
            N
Sbjct: 213 EN 214


>gi|119962528|ref|YP_947428.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119949387|gb|ABM08298.1| putative transcriptional regulator, LuxR family [Arthrobacter
           aurescens TC1]
          Length = 551

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT REVE L+ +  G ++ +IA  L IS  T   ++A+I  K    +R+ A A+A
Sbjct: 481 GEPGGLTSREVEVLSCVLSGSSNRQIADSLTISEKTAGRHLANIFTKIGVTSRTAAAAWA 540

Query: 241 VRNNI 245
            ++ I
Sbjct: 541 RQHGI 545


>gi|86608341|ref|YP_477103.1| LuxR family transcriptional regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556883|gb|ABD01840.1| transcriptional regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 87

 Score = 85.4 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ +  I+ G T+ +IA  L IS+ TV+N+I++I+ KT T  R   + +A++   
Sbjct: 11  LSERELQVIELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTANRVALVRWALQWGK 70

Query: 246 V 246
           +
Sbjct: 71  I 71


>gi|332671209|ref|YP_004454217.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332340247|gb|AEE46830.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 207

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P+ +++   R    G  A   +   +      G+   LT RE E L  ++ G ++
Sbjct: 102 LLKDTPRDQLVAGVRAAARGESALSPSVARRLVQQVRGEQERLTAREQEVLAGVARGLSN 161

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I   L I+  TV  ++     K     R+ A+  A+   I+
Sbjct: 162 AGIGRELFITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL 204


>gi|326559661|gb|EGE10074.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 46P47B1]
 gi|326559921|gb|EGE10320.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 103P14B1]
 gi|326561209|gb|EGE11574.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 7169]
 gi|326566300|gb|EGE16451.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 12P80B1]
 gi|326567904|gb|EGE18001.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC1]
 gi|326569517|gb|EGE19577.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC8]
 gi|326572718|gb|EGE22704.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC7]
 gi|326573892|gb|EGE23844.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 101P30B1]
 gi|326577343|gb|EGE27230.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis O35E]
          Length = 218

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 25/227 (11%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            +  + L    D       L   +S    +  + E   A+H +     L QE  +  +V 
Sbjct: 8   AANPARLLLVDDHPMLRRGLADLLSLEKDVQVIAE---ANHGMEALDILNQE--IVDLVI 62

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFC-----PVFHTLPENITPPAGMDNRYCSLT 134
            D    ++  +   +K +   +  +            V   L   +      D     + 
Sbjct: 63  LDHTMPILNGIETLKKIRELGIQTKVLLFTVSDNSKDVQDALHLGVDGYLLKDMEPEQII 122

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+ +I  G +++ P    IL   + +                V      ELT RE++  
Sbjct: 123 TDIRKILCGELVISPSLAPILAQAMRKP---------------VKTDSSHELTEREIQVA 167

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             I++G ++  I   LGI+ +TV  ++  I+ K   +TR     +AV
Sbjct: 168 KMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAVWAV 214


>gi|67924631|ref|ZP_00518043.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
 gi|67853530|gb|EAM48877.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
          Length = 90

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +     L+GRE++ L  +S G T+ EIA  L IS+ TV+N+I++I+ KT T  R   +
Sbjct: 4   AKFQNPVSLSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTDNRVELV 63

Query: 238 AYAVRNN 244
            + ++  
Sbjct: 64  RWGLQWG 70


>gi|269138467|ref|YP_003295167.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|267984127|gb|ACY83956.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|304558493|gb|ADM41157.1| Nitrate/nitrite response regulator protein [Edwardsiella tarda
           FL6-60]
          Length = 215

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           ++V       + +  ++  D  F +V   +   +        +P   L       L    
Sbjct: 14  MIVDDHPLMRRGVRQLLELDSVFSVVAEASNGSEAIALAERSQPDLILLDLNMKGLSGLD 73

Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           T  A    G+D R   LT   AR  +  ++       +L+D   E  L    QA   +S 
Sbjct: 74  TLKALRNEGIDARIIILTVSDARSDVYALVDAGADGYLLKDSEPEALLAQIRQAAEGRSV 133

Query: 177 ------------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                               +LT RE++ L  ++ G ++ +IA  L IS  TV  +I ++
Sbjct: 134 FSESVLAYLSTRSEIADPLADLTERELDVLQEVARGMSNKQIAAQLHISEETVKVHIRNL 193

Query: 225 MRKTATKTRSGAIA 238
           +RK   ++R  A  
Sbjct: 194 LRKLNVRSRVAATV 207


>gi|300784836|ref|YP_003765127.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794350|gb|ADJ44725.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 212

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 4/145 (2%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +  P  +       L EN+            L      + +  +     G  ++   +  
Sbjct: 71  VPEPLRVVMVTTFGLDENVHAALRAGACGFLLKDAGPNLLVEAVHAAAHGEALVSPAIT- 129

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             LLA Y     +        +  LT RE++ +  ++ G+T+DEI   L +S  TV  +I
Sbjct: 130 TRLLAHYARRAPRRV---TPPESPLTPRELDVVKAVARGETNDEICRSLVVSMPTVKTHI 186

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +  RK   + R+    +A  + +V
Sbjct: 187 GAAKRKLGVRNRTEIAIWAWESGLV 211


>gi|262204133|ref|YP_003275341.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087480|gb|ACY23448.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 216

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 5/160 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLM 145
           ++    +       +L+   E    V     E       +       L     R  +   
Sbjct: 58  MQMPDGTGATATAELLKVCPEAHVLVLSASDERDDVLDAIKAGATGYLVKSAQRSELVAA 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +            ++  GL         +       +   LT RE + L  +++G +S +
Sbjct: 118 VHATADG----QAVFTPGLAGLVLGEYRRIARSPGPETPVLTERETQVLREVAKGLSSRQ 173

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L IS  TV N++ + +RK     R     YA+ + +
Sbjct: 174 IANRLAISPRTVENHVGATLRKLQLANRVELTRYAIEHGL 213


>gi|254482414|ref|ZP_05095654.1| transcriptional regulator, LuxR family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037419|gb|EEB78086.1| transcriptional regulator, LuxR family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 209

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 8/154 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +A     +    +Q       PV          E           YC L     ++R  
Sbjct: 46  DIAALAPAERSAEVQAAAAFGWPVVVMAATPGESEAFQLLNQGAVGYCHLKAAPEQLREV 105

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            +++   G  +  + +     L+                  ELT RE+     ++ G ++
Sbjct: 106 ALVVEHGGFWMPPELMQRFLALSTRVVPTKAPVSPELN---ELTSRELMVAEQVARGASN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            EI+  L IS  TV  ++++   K   + R    
Sbjct: 163 REISQALSISERTVKAHLSAAFEKLGVRDRVQLA 196


>gi|223935142|ref|ZP_03627060.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896026|gb|EEF62469.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V                    L   +  I  G     P     LRDR  E          
Sbjct: 92  VQKLTEAGAAGYLIKQTAANDLVHAIHDIHAGNAYFSPTIAKRLRDRARE---------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F + +    K   LT RE E L  I+EG+ + +IA  LGIS  TV  +   +M K    
Sbjct: 142 GFANGNNSNVKTSNLTEREAEVLQLIAEGQANKQIASELGISIKTVEKHRQQVMNKLNIH 201

Query: 232 TRSGAIAYAVRNNIV 246
             +G   YA+   ++
Sbjct: 202 DVAGLTRYAISKGVI 216


>gi|85058263|ref|YP_453965.1| transcriptional activator protein [Sodalis glossinidius str.
           'morsitans']
 gi|84778783|dbj|BAE73560.1| transcriptional activator protein [Sodalis glossinidius str.
           'morsitans']
          Length = 245

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 24/199 (12%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPP 123
           Q++K   ++ S++P + V     ++  K   VL   ++           F       +  
Sbjct: 45  QDEK--PVIYSNYPKEWVEKYMKNKLYKQDPVLLVASQKIMSFPWQKNYFKKTKHQKSNI 102

Query: 124 AGMDNRY-----CSLTFDVARIRIGLMLLFPKGRII--------LRDRLWEI--GLLAAY 168
               + Y      +         + ++ L+ +              DRL+ +   +   +
Sbjct: 103 FAQSSEYNITRGYTFPLHDHENNLAMLSLYTESDPDQLMKCISDHEDRLYLLFLSIHNRF 162

Query: 169 QANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            A   +  +    K +  LT RE+E L W S GKT  EIA+I+GI+ +TV  +I +++ K
Sbjct: 163 LAEKAQQTNTSNTKIEKRLTSREIEALHWASIGKTYREIAIIMGITESTVKFHIGNLIVK 222

Query: 228 TATKTRSGAIAYAVRNNIV 246
                   AI  A   +++
Sbjct: 223 LDVINAKHAIKKATDLHLL 241


>gi|88807455|ref|ZP_01122967.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
 gi|88788669|gb|EAR19824.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
          Length = 261

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 21/234 (8%)

Query: 31  DLLARMIPLDCTVSWTMRM--YALTEYVGASHFLLVRWDL---FQEQKLDSIVSSD---- 81
           DL +R+  L         +   + +    A   LL  W +    Q   + +  S D    
Sbjct: 21  DLSSRIPSLQQQSRQGHSLLRRSRSAIATADPVLLASWTIWFEGQGPLVAACTSEDDCLG 80

Query: 82  ----WPFDLVRCMALSEKDKYYNVLQRPT----ELFCPVFHTLPENITPPAGMDNRYCSL 133
                   L+ C  L E     ++++R      EL   +    P   T    ++   C  
Sbjct: 81  NIQSHAASLLLCTDLLESGSGISLVRRALAVQPELKALILLRRPIARTILDAIEAG-CHG 139

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHWGKDFELTGREVE 192
              V     G   +      I  D  +   +++     +   S         +LT RE +
Sbjct: 140 ICAVQSAGTGA--VATALTAIDSDGQYLDPVISGVLHHSRLSSSGGQQLPLQDLTMREED 197

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +  G T+ EIA  L +S  TV ++++S++RK   K R+ A+  A R  +V
Sbjct: 198 VLRGLCRGMTNLEIAEDLLVSIETVKSHVSSLLRKLPAKDRTAAVVTAFREGLV 251


>gi|307325965|ref|ZP_07605164.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888457|gb|EFN19444.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 259

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 16/164 (9%)

Query: 89  CMALSEKDKYYNVLQRPTEL----------FCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
            +  S     +  ++   EL              F                Y     + +
Sbjct: 94  RLGSSGDGGDHEGIEVCRELRARLPDLACLMLTSFDDDEALFDAIMAGAAGYVLKQINGS 153

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     ++      + G  A   A +         +   L+ RE E L  I 
Sbjct: 154 DLVSAVRTVAGGRSML------DPGATARVMARLRGPAPSGPVELENLSPREREILQLIG 207

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +G T+ +IA  L ++  TV N I++I+ K     R  A   A R
Sbjct: 208 DGLTNRQIAERLFLAEKTVKNRISAILSKLGVGRRIQAAVIAER 251


>gi|313820373|gb|EFS58087.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313822823|gb|EFS60537.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|314925260|gb|EFS89091.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
          Length = 210

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G LA   A    +          LT RE++ L   ++G ++ +IA  L +S  TV  +++
Sbjct: 128 GALAPAVATRLMAR--MRSPRTSLTARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +RS A+A A     +
Sbjct: 186 HIYTKLGVSSRSAAVAKARDIGFI 209


>gi|300859067|ref|YP_003784050.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686521|gb|ADK29443.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302331322|gb|ADL21516.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis 1002]
          Length = 208

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 15/130 (11%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           TL          D     L   +     G +L+ P+   +L DR               +
Sbjct: 90  TLEYGARGYLLKDAGPELLVEAIRSAYRGDVLISPEVLSLLLDR---------------R 134

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S       D  LT RE+E    I+ G+T+ EIA  L IS +TV  ++A I  +   + R 
Sbjct: 135 SKPNTSSSDLPLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNRV 194

Query: 235 GAIAYAVRNN 244
              A   R+ 
Sbjct: 195 EIAAALWRSG 204


>gi|223041846|ref|ZP_03612034.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           202]
 gi|223017339|gb|EEF15762.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           202]
          Length = 209

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    +R  A  
Sbjct: 149 LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201


>gi|223938390|ref|ZP_03630284.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223892959|gb|EEF59426.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 234

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +          D     L   +  +  G     P    I         +L  Y A 
Sbjct: 107 VLQIIKSGAQGYVLKDAPLTELVRAIESVHGGGAFFSPDISQI---------MLDQYLAE 157

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                +    K  +LT RE E L+ I+EG+++ E+A  +G+   TV  +   +M K    
Sbjct: 158 ATNGEESGNSK--KLTNRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRERVMNKLDIH 215

Query: 232 TRSGAIAYAVRNNIV 246
             +G   YA+ + I+
Sbjct: 216 NVAGLTKYAIAHGII 230


>gi|84622783|ref|YP_450155.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366723|dbj|BAE67881.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 552

 Score = 85.0 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 11/195 (5%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A  F L RW     +   ++V        +    L+  + ++    R            P
Sbjct: 349 AMGFALARWHRLAGRSSAALVILGQ----IEQACLANDNAWHLARTRARIALVLQQRGEP 404

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG----LLAAYQANMF 173
               P       + +LT     I    +      R + +     +G     L        
Sbjct: 405 LAALPYLYSALEHVALTQSWQSIVELGLPAKAMLRSLRQHDPHTVGGSTRALTIQALLER 464

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S D     D   + RE+E L  ++ G ++ +IA  L +S NTV  ++ ++ RK   ++R
Sbjct: 465 LSDDDDPAGDI-FSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSR 523

Query: 234 SGAI--AYAVRNNIV 246
             A+  A AV+  ++
Sbjct: 524 ESALAQAQAVQRGLL 538


>gi|307328094|ref|ZP_07607274.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886213|gb|EFN17219.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 238

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 36/68 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V       L+ RE++ L  I++G T+ + A  L IS+ TV  ++  +  K   K R+ A+
Sbjct: 169 VRKPTQGPLSDRELQVLRLIADGATNRQAAAALFISQATVKTHLLHVYEKLGVKDRAAAV 228

Query: 238 AYAVRNNI 245
           + A + ++
Sbjct: 229 SEAHKRHL 236


>gi|229031002|ref|ZP_04187018.1| Response regulator [Bacillus cereus AH1271]
 gi|228730349|gb|EEL81313.1| Response regulator [Bacillus cereus AH1271]
          Length = 566

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 97/253 (38%), Gaps = 11/253 (4%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E  Q  + +    EQ T  V ++P ++  +  +I L       +   +L + +      
Sbjct: 316 LEQVQGTLSIQSNVEQGTLIVCNIPLQTIPVHDIIRLLVVDDQALITNSLEQILEHQTDF 375

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119
           +V    +   +   +     P  ++  + + E +    +L+   R   +   +  T  ++
Sbjct: 376 IVAGKAYDGSEALILCEKLQPDIVLMDIQMPEMNGIEALLEMKRRWPNMKIVLMTTFEDS 435

Query: 120 ITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMF 173
           +     ++     Y   +     ++  L L++  G  I +    R++E   L   Q    
Sbjct: 436 LQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIFEEMKLQREQLAKI 495

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS    +   + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R
Sbjct: 496 KSTKQTF--PYGLTKREMEVLEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVNNR 553

Query: 234 SGAIAYAVRNNIV 246
             AI  A   NI+
Sbjct: 554 EEAIKMARTENIL 566


>gi|224535141|ref|ZP_03675680.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523238|gb|EEF92343.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 209

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 39/77 (50%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A      + H   + +L+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K  
Sbjct: 128 ATAHPCGNPHADSEHDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLG 187

Query: 230 TKTRSGAIAYAVRNNIV 246
            K+ +G   YAV +  V
Sbjct: 188 IKSVAGLTIYAVMHGYV 204


>gi|163839051|ref|YP_001623456.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952527|gb|ABY22042.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 158

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 8/141 (5%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGL 164
           L    F      +         +   +     I   ++ +   G ++  +    + E  L
Sbjct: 22  LILTTFDLDEYVLGGLRAGAAGFLLKSASAEEIVQAIITVATGGSVLAPEVTKTVIEQML 81

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            A+ +A +     +      ELT RE+E L  +  G T+ +IA  LGI+  TV  +++ I
Sbjct: 82  SASSRAEIRTPPGLA-----ELTARELEVLRAVGAGWTNQQIANRLGIAETTVKTHVSRI 136

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
             K    +R  A  + V + +
Sbjct: 137 FNKLDLVSRVQAAIFCVEHQL 157


>gi|15614660|ref|NP_242963.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174716|dbj|BAB05816.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 210

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 8/173 (4%)

Query: 78  VSSDWPFDL-VRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +     FD+ V  + + E D       +  R  E+   +  T  ++      +       
Sbjct: 42  LCESQRFDVAVLDIRMPEMDGIEAAKVLRSRFPEMKILMLTTFDDHQYVMEALKLGVSGY 101

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                        L    +  L   L     +AA    +   ++     D  LT RE+  
Sbjct: 102 MLKDGDTE----SLIRSIKSALNGGLSLEDQVAAKVMPVLLQHEEAIPIDPTLTPREIAI 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I EG  + E+A  LG+S  TV N  + I+ K A + R+    YA+R+ +V
Sbjct: 158 LKCIGEGLNNKEVAERLGLSVGTVKNQTSQILDKLALRDRTQLAIYAIRHRLV 210


>gi|85703813|ref|ZP_01034916.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
 gi|85671133|gb|EAQ25991.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
          Length = 240

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 7/183 (3%)

Query: 63  LVRWDLFQ--EQKLDSIVSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLP 117
           + R D  +  +Q L  +  +  P  +V  + L +    D    +     E    V  ++ 
Sbjct: 47  IARIDTAESLDQALAMVAENGPPDIIVLDLNLPDVTGLDGLARLKSVVGETPIVVVSSMS 106

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           E+    + +     +  F     +  +     +        L E  +L     +     D
Sbjct: 107 ESRMVCSVIHAG--AAGFVPKHSQRPVFRAAFEAIAAGEIFLPEGVVLTKTPEHPVNDRD 164

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT ++   L  I EG+ + +IA  L I+  TV  ++ +IMRK   +TR+ A+
Sbjct: 165 EAVERLAHLTRQQARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAV 224

Query: 238 AYA 240
             A
Sbjct: 225 LIA 227


>gi|325277292|ref|ZP_08142919.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|324097558|gb|EGB95777.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 219

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 2/139 (1%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +     HT P+ I            L    A      +     G   L   +    +  A
Sbjct: 79  VLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALEAVRHGERYLSPAIAHTVINQA 138

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            Q N  +           LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++
Sbjct: 139 LQRN--RPGAQGGSDRHNLTARQLEILRLIVRGKSTREIATGLGLSIKTVETHRSQIMKR 196

Query: 228 TATKTRSGAIAYAVRNNIV 246
                 +G + +AVR  I+
Sbjct: 197 LQIHDVAGLVLFAVREKII 215


>gi|316931973|ref|YP_004106955.1| autoinducer-binding domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315599687|gb|ADU42222.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 242

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 19/190 (10%)

Query: 59  SHFLLV---RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
           SH+L     R D    Q L       W         +   ++Y +  Q+        +  
Sbjct: 62  SHYLRSHYERIDPVIMQALRDTEPFRW--------GIGSTERYLSPAQKRLLDEASQYGI 113

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                 P         ++TF   +          +  +    R+ ++  +  +     K 
Sbjct: 114 RLGFTVPIHDGHGPVAAVTFAGNQREAQF-----ERFVTSNPRMLQLMAMFFHSHVRRKL 168

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE ECL W + GK++ +I  ILGIS +T  +Y+ +   K   +T   
Sbjct: 169 ASDLRVDGAALSAREFECLEWAARGKSAWDIGRILGISHHTAISYLNNAKAKLGVRTVVQ 228

Query: 236 A---IAYAVR 242
           A   +A A R
Sbjct: 229 AALRVAAAKR 238


>gi|288916220|ref|ZP_06410600.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288352411|gb|EFC86608.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 211

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 42/98 (42%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I   R      +        +   V   +   L  RE + L  I+EG T+ +I
Sbjct: 113 LVGAIRTIAAGRSLLDPAVTQKVLARLRDEPVEDEQLSALGARERQILRLIAEGMTNRQI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  + +S  TV NY+++I+ K    +R+ A  +A R  
Sbjct: 173 AACVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAARLK 210


>gi|312889097|ref|ZP_07748656.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311298407|gb|EFQ75517.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 225

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 17/222 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-------LFQEQKLDSIVSSDWPFDLV 87
           ++  ++  + +   + A+    G    +    D       L     L  ++  D     +
Sbjct: 8   KIGIVEDQLLFREGIKAILHNWGDFSVIFESADGHSVIQKLSTTAVLPDVMLVDLMLPSI 67

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGL 144
                        + +    +   +     +       + N    Y     D   +   +
Sbjct: 68  NNKEYRGSHLTLALGELYPSIKVLILSVHDDENFIIELVKNGAHGYLVKDCDPQELHDAI 127

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++ KG  I    L     +        KS  +       ++ RE E L    +  T++
Sbjct: 128 VAVYTKGSYINSRTL---TAIQNNMGRKVKSKKLL----VNISAREEEILRLTCQQYTAE 180

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TVN +  +++ KT ++  +G + YA++NNIV
Sbjct: 181 EIANKLFISVKTVNGHRNNLLIKTGSRNVTGLVIYAIKNNIV 222


>gi|297202079|ref|ZP_06919476.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297148031|gb|EDY58315.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 280

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            F+L+ RE E +  I+ G T+ +IA    IS  TV N+I  I  K  + +RS A A 
Sbjct: 211 RFQLSAREAEIMDLIASGMTNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAAK 267


>gi|294626147|ref|ZP_06704754.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665211|ref|ZP_06730510.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599596|gb|EFF43726.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605034|gb|EFF48386.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 235

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L+ +  G T+  +A  LGIS  TV  ++  I++K   K R+ A  YAV++ +
Sbjct: 174 LSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|256397404|ref|YP_003118968.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
            44928]
 gi|256363630|gb|ACU77127.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM
            44928]
          Length = 1084

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%)

Query: 178  VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               G    LT RE+E L  +++G ++ +I   L IS  T + ++++I+ K     R  A 
Sbjct: 1013 ADSGSPLGLTARELEVLALVAQGLSNRQIGERLFISTKTASVHVSNILAKLGVSGRGEAA 1072

Query: 238  AYAVRNNI 245
            A A R  +
Sbjct: 1073 AVAHRLRV 1080


>gi|116672689|ref|YP_833622.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116612798|gb|ABK05522.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 218

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              +  L+ RE++ L  ++ G  +  IA  L IS  TV  ++  I  K     R+ AI+ 
Sbjct: 149 RNPEPALSAREIQLLQLLATGLPNRAIARRLFISEATVKTHLVHIYGKLGVDNRTAAISV 208

Query: 240 AVRNNIV 246
           A +  I+
Sbjct: 209 ATQRRII 215


>gi|301059490|ref|ZP_07200403.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300446385|gb|EFK10237.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 225

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 40/90 (44%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           DR     +     A   K  +        LT RE E +  I+EG+++ +I+  L IS+ T
Sbjct: 129 DRSVSHIVAKNLLAAEEKKGNARMPGYDTLTRREQEIMRLIAEGRSTKQISQQLFISQKT 188

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V N+ A+I  K    +    + +A +   +
Sbjct: 189 VENHRANIFSKLDIHSTMELVRFAAKYGFI 218


>gi|260576451|ref|ZP_05844441.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sp. SW2]
 gi|259021334|gb|EEW24640.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sp. SW2]
          Length = 214

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWIS 198
            +G   L    + + + + +    LA    N  +S       +   +L+ RE + L  ++
Sbjct: 107 GVGSRDLVAVVKDLAQGQSYVSPALAGRILNAMRSGAAAKTANPIDDLSKREEDILRLVA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EGK++ E+ ++L +   TV +Y+ SI++K   + R  A  +A  +
Sbjct: 167 EGKSNKEVGLVLDLQEKTVKHYMTSILQKLHVRNRVEAAVFAREH 211


>gi|258654847|ref|YP_003204003.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558072|gb|ACV81014.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 233

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +            R   L   V R+  G  LL P              + A     +
Sbjct: 113 FAAIMAGAAGYVLKQIRGSDLVDSVRRVAAGQSLLDP-------------AVTARVLERV 159

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K  ++       LT +E   L  I EG T+ +IA  + ++  TV NY++S++ K   + 
Sbjct: 160 RKGPELDPAL-APLTEQERRVLALIGEGMTNRQIAEAMFLAEKTVKNYVSSLLAKLGLQR 218

Query: 233 RSGAIAYAVRNNI 245
           R+ A  +A ++++
Sbjct: 219 RTQAALFAAKHHL 231


>gi|208401188|gb|ACI26687.1| RhlR transcriptional regulator [Pseudomonas aeruginosa]
 gi|209171245|gb|ACI42868.1| RhlR [Pseudomonas aeruginosa]
          Length = 241

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            + +       L+ RE E L W ++GK+S EIA+IL IS +TVN +  +I +K     +
Sbjct: 170 EHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNK 228


>gi|307150964|ref|YP_003886348.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306981192|gb|ADN13073.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822]
          Length = 90

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 39/67 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R   +
Sbjct: 4   SKFETPASLSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELV 63

Query: 238 AYAVRNN 244
            +A++  
Sbjct: 64  RWALQWG 70


>gi|144898194|emb|CAM75058.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 209

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 33/70 (47%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        LT RE+E L  I++G  + EIA  L I+  TV  +   IM+K      +  
Sbjct: 139 DGGEANVPSLTAREMEVLRLIAQGLKNREIADTLSIAIKTVETHRTKIMQKLDLHNSAEL 198

Query: 237 IAYAVRNNIV 246
             YA+R  ++
Sbjct: 199 ATYAIRRGLI 208


>gi|320547831|ref|ZP_08042115.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320447591|gb|EFW88350.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 227

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 6/176 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NR 129
             + +  P  ++  + + + D       V +    +   +  T  ++    + +      
Sbjct: 41  ETLPTSKPDVILMDIRMPKMDGVLCTKAVKEHYPNIKVIILTTFDDDDFIYSALKYGATG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      +  +   ++       +I  D   ++  L +  A    +  V      +++  
Sbjct: 101 YMLKGTSMDDLHDAVVTANEGRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKM 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E   +  I  G ++ EIA  L +S  TV NY+++I+ K   + R+    +AV+  +
Sbjct: 161 EWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTGV 216


>gi|297625366|ref|YP_003687129.1| LuxR family transcriptional regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921131|emb|CBL55678.1| two-component response regulator LuxR [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 236

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   +  +  G  ++ P     L +R      +A    +
Sbjct: 105 VYSALQAGASGFLLKDAGPTELLAAIRAVASGDSVVAPSATRRLLERFVPTLPIAQSGGD 164

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K  +        LT RE E LT + +G  + EIA  L +   TV  +I  I+ K   +
Sbjct: 165 TKKRLEA-------LTDREREVLTLVGQGLNNTEIAETLFLGSATVKTHIGHILAKLQLR 217

Query: 232 TRSGAIAYAVRNNIV 246
            R   + +A    +V
Sbjct: 218 DRVHMVVFAYDAGLV 232


>gi|312196796|ref|YP_004016857.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228132|gb|ADP80987.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 221

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 14/132 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +            R  +L   V R+  G  LL P           E+     Y+   
Sbjct: 103 FTAIMAGAAGYVLKQIRGAALVDAVRRVAAGQSLLDP-----------EVTPRVLYRLRQ 151

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             + D        LT +E   L  I+EG T+ +IA  + ++  TV NY++S++ K   ++
Sbjct: 152 GPAEDERLA---GLTDQERRILALIAEGLTNRQIANRMYLAEKTVKNYVSSMLSKLGLES 208

Query: 233 RSGAIAYAVRNN 244
           R+ A  +A +  
Sbjct: 209 RTQAAVFATKLG 220


>gi|213691407|ref|YP_002321993.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522868|gb|ACJ51615.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 220

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 33/73 (45%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A +A    S +        LT RE E ++  + G TS EI   LGI  +TV  YI  + 
Sbjct: 140 TAQEAYSKLSPEDAGQYHKNLTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVT 199

Query: 226 RKTATKTRSGAIA 238
            K   K R+ A+ 
Sbjct: 200 EKMDVKNRTQAVI 212


>gi|46201852|ref|ZP_00208275.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 238

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 64/181 (35%), Gaps = 12/181 (6%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR-PTELFCPVFHTLPENITPPAGM 126
             Q QK   IV  D          ++  +    + +  P+E+   V     +       +
Sbjct: 60  AVQTQKDIDIVLLDLTMP-----GMAWAEGLAKLKELLPSEVPLIVLSASDDRRHVLQAV 114

Query: 127 DNRYCSLTF--DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           +            +R+ +  + L   G + L   L +             +         
Sbjct: 115 NMGAAGFIPKTSSSRVMLSALQLVLSGGVYLPPALLDQSGPGGDDG----APVAGESAIA 170

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT R+ E L  + +GK++ EIA +L ++  TV  ++ +I++      R+ A+  A    
Sbjct: 171 ALTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAASHLG 230

Query: 245 I 245
           +
Sbjct: 231 L 231


>gi|283853336|ref|ZP_06370584.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
 gi|283571260|gb|EFC19272.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
          Length = 225

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 9/207 (4%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS-----EKDKYY 99
           +   + ++    G + + +V  +    ++   +  S  P  +V  + L      E  +  
Sbjct: 16  FREGLRSILS--GLAAYGVVG-EAGSAREAMELARSRTPDVVVLDIGLPDANGIEVIRQL 72

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             L     +     HT  + +            L    A   +  +    +G   L   +
Sbjct: 73  RTLAVCPRILVVSMHTRLDLVAESLRAGALGYVLKDSAAANLLHGLEAVSRGDRYLDGSI 132

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               LL   +  + +S       D  LT RE + L  ++EG+++  IA  L ISR TV N
Sbjct: 133 VPQLLLKLDEYAVRRSRPADPAYDT-LTRREQQILRLLAEGRSAGAIAADLYISRKTVEN 191

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           + A+I  K    + +  + YAVR  ++
Sbjct: 192 HRANIFGKLGLTSMAELVHYAVRLGLI 218


>gi|227540406|ref|ZP_03970455.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239730|gb|EEI89745.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 117

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGKT 202
           + +  +   + ++   +I L+  Y    F   + D    KD + + REV+ +  I+EG +
Sbjct: 14  LNIHTRIDHLSKENTNKISLIGLYGEPSFIHLNVDTQEKKDTKFSKREVDIIKLIAEGLS 73

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EIA  L I+  TV  +  +I+ K   K  +  I  +V   ++
Sbjct: 74  NNEIAEKLFIASVTVKKHRQNILLKAGCKNTAQLIKNSVLQGLI 117


>gi|220913455|ref|YP_002488764.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219860333|gb|ACL40675.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 226

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 9/143 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y + T   A I   +  +     +           L
Sbjct: 91  RFLALSVSDAAEDVVAVIRAGARGYVTKTISGAEITDAVFRVAGGDAVFSP-------RL 143

Query: 166 AAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A +  + F     D+   +  +L+ RE+E +  I+ G +  E+A  L IS  TV  ++++
Sbjct: 144 AGFVLDAFGTAPADIADDELDKLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSA 203

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++RK    +R     +A    ++
Sbjct: 204 VLRKLQLSSRHELTKWAAERRLL 226


>gi|311695311|gb|ADP98184.1| regulatory protein, LuxR [marine bacterium HP15]
          Length = 900

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ++ RE   L  I++G ++ EIA  L IS +TV  +   I  K   K+R+ AI  A    
Sbjct: 839 PISEREQGVLELIAKGLSNQEIADKLHISLHTVKTHARRINAKLEVKSRTQAIVRARELG 898

Query: 245 IV 246
           ++
Sbjct: 899 LL 900


>gi|302540939|ref|ZP_07293281.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302458557|gb|EFL21650.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces himastatinicus ATCC 53653]
          Length = 214

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 10/169 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + +   D      +      R   L    F              + +      
Sbjct: 48  PDVVLMDIRMPGMDGLEATRRIVATGGRTRVLIVTTFDLDAYAYEGLRAGASGFLLKDAR 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECL 194
              I  G+  +     ++   RL    LL AY   +               L+ RE E L
Sbjct: 108 PEEIVAGIHAVATGDAVVAP-RLTRR-LLDAYAHQVLAPPGTPAEDPRLHTLSDREREVL 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             I +G T+ EIA  L ++ +TV  ++  ++ K   + R  A+   VR+
Sbjct: 166 VAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVIMGVRH 214


>gi|167645498|ref|YP_001683161.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347928|gb|ABZ70663.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 137

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LAA  A    + +V       LTG+EV+ L  ++ G+++ EIA  LG+S NTV  +IA +
Sbjct: 55  LAARAAPAPFARNVAAVASLGLTGQEVKVLERLAAGQSNKEIAAALGLSPNTVKTHIAHL 114

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K A   R+ AI  A   +++
Sbjct: 115 FEKLAVSRRTQAIGKARDLHLI 136


>gi|111221722|ref|YP_712516.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111149254|emb|CAJ60939.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 181

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +            R  +L   V ++  G  LL P     +  RL E           
Sbjct: 63  FTAIMAGAAGYVLKQIRGTALVDAVRQVAAGKSLLDPAVTPRVLVRLRE----------- 111

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             + D        LT +E   L  I+EG T+ +IA  + ++  TV NY++S++ K   ++
Sbjct: 112 GPAEDERLA---GLTDQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLAKLGLES 168

Query: 233 RSGAIAYAVRNN 244
           R+ A  +A R N
Sbjct: 169 RTQAAVFATRLN 180


>gi|158318878|ref|YP_001511386.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158114283|gb|ABW16480.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 225

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P     L  R  E   + +  + 
Sbjct: 92  VYQALRAGASAFVLKDIPADQLAGAVRTVADGGALLAPSITRRLIGRFTERRAVGSAPSR 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +           LT RE + +  ++ G ++ EIA  L I   TV ++++SI+ K   +
Sbjct: 152 RVER----------LTDRERDVVVAVARGSSNSEIAQELFIGPATVKSHVSSILTKLGLR 201

Query: 232 TRSGAIAYAVRNNIV 246
            R+  + +A  + +V
Sbjct: 202 DRTQVVVFAYESGLV 216


>gi|300934165|ref|ZP_07149421.1| putative transcription regulator [Corynebacterium resistens DSM
           45100]
          Length = 240

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 15/164 (9%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+              L   V     + I         Y + T +   +   +  +   
Sbjct: 73  GLAIVQHCITAGYSTRFLCLSVSDAAEDVIALIRAGARGYVTKTIESRELVSAIGRVHSG 132

Query: 151 GRIILRD----RLWEIGLLAAYQANMFKS--------YDVHWGKDF---ELTGREVECLT 195
             +         L       + Q+N + +         +    K     ELT RE E L 
Sbjct: 133 DAVFSPKLAGYVLDAFSTPTSGQSNQYMAGAGEPVAASEEDEEKRLVLDELTRREKEVLR 192

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ++ G T  E+A  L IS  TV  ++++I+RKT    R     +
Sbjct: 193 LLARGYTYREMAERLFISVKTVETHVSNILRKTQQSNRHALTRW 236


>gi|317129844|ref|YP_004096126.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474792|gb|ADU31395.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 74

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   VR  
Sbjct: 12  LTKREREVFELLVQDKTTKEIAAELFISEKTVRNHISNTMQKLGVKGRSQAVIELVRLG 70


>gi|209547437|ref|YP_002279355.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538681|gb|ACI58615.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 959

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L +++  +   A       K       K   LT RE E L  ++ G+++ EIA  L IS
Sbjct: 865 LLANQIETLAAKARIDLRGGKEGSTPKAK-LGLTDREFEVLRLVAAGQSNREIADNLFIS 923

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             T + ++++I+ K A  +R  A A A R  IV
Sbjct: 924 SKTASVHVSNILSKLAVPSRGAAAAMAHRLRIV 956


>gi|288917708|ref|ZP_06412071.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350923|gb|EFC85137.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 243

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 18/155 (11%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L    F              + +         +  G+  +     ++         LL  
Sbjct: 80  LILTTFDLDRYAFAGLRAGASGFLLKDVPPDDLLAGIRTVAAGDAVVAPSTTRR--LLDG 137

Query: 168 YQANMFKSYDVHWG----------------KDFELTGREVECLTWISEGKTSDEIAVILG 211
           +   +    D   G                +   LT RE + L  ++ G ++ EIA  L 
Sbjct: 138 FAHRLPDLDDSGSGAGHRPFGAGPGRDGADRLARLTDRERDVLGEVAAGLSNAEIATRLV 197

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  TV  ++  I+ K   + R  A+ +A    +V
Sbjct: 198 LAEGTVKTHVGRILGKLELRDRVQAVVFAYEIGLV 232


>gi|253687834|ref|YP_003017024.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754412|gb|ACT12488.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 245

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 30/198 (15%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD--------- 127
           ++ S++P + V     +       V+        P   +  +NI   + +          
Sbjct: 45  VIISNYPQEWVNTYKENNYQHIDPVILTAINKVSPF--SWEDNIVINSKLKFSKIFNLSK 102

Query: 128 -----NRYCSLTFDVARIRIGLMLLFPKG-----RIILRDRLWEIGLL--------AAYQ 169
                N Y  +  D       L ++F +        I+ +   ++ +L            
Sbjct: 103 EYDIVNGYTFVLHDNNNNLAALSIMFEEHSPTDIESIVEENKDKLQMLLITVHEKITTLY 162

Query: 170 ANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             M +S       D E  + RE E L W S GKT  EIA+IL I  +TV  +I ++++K 
Sbjct: 163 KEMTQSTQSRKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKL 222

Query: 229 ATKTRSGAIAYAVRNNIV 246
                  AI   V   ++
Sbjct: 223 GVLNAKHAIRLGVELQLI 240


>gi|270308742|ref|YP_003330800.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270154634|gb|ACZ62472.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 238

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           VH     +LT RE   L  +++G ++ +I   L  ++ TV  Y+ + M+K     R+   
Sbjct: 170 VHKKFGTDLTDRERTILNLLAKGYSNKDIGQKLDYTQTTVKKYVYNCMKKLGVSNRTQLA 229

Query: 238 AYAVRNNI 245
             A  N +
Sbjct: 230 ILANNNGL 237


>gi|150388326|ref|YP_001318375.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948188|gb|ABR46716.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 205

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 12/133 (9%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY---------- 168
           N     GM  ++  LT    R              IL++   E  L A            
Sbjct: 66  NKARAKGMATKFIVLTSSSKREDFLRAREAGVDGYILKEAFAEDILYALRIVLRGKKFID 125

Query: 169 -QANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +   +++ D+       ELT RE + LT + +G ++ EI   L IS +TV  ++++I+ 
Sbjct: 126 PEVIQYQTSDIRENSHLDELTPRERDVLTELGKGLSNFEIGKQLFISEHTVKKHVSNILS 185

Query: 227 KTATKTRSGAIAY 239
           K     R+ A  +
Sbjct: 186 KLELNHRTQAALF 198


>gi|298113037|gb|ADI58626.1| AsuR1 [Streptomyces nodosus subsp. asukaensis]
          Length = 216

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG ++ + A  L IS + V   + +++ K     R+ A+  A+   +
Sbjct: 134 LTPRELQVLRLVAEGLSNKQAARRLQISEHGVKRLVGNVLAKLNCPNRTLAVVRALEYGL 193

Query: 246 V 246
           +
Sbjct: 194 L 194


>gi|305680225|ref|ZP_07403033.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659756|gb|EFM49255.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 216

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 7/202 (3%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY-----YNVLQR 104
            AL   +G+   L V   +   Q     V+      ++  + + + D             
Sbjct: 16  RALATILGSQPDLEVVATVHDGQAAVDTVAHTPVDLILMDVRMPKLDGVAALKKIRAKPN 75

Query: 105 PTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           P ++       +P+ +        N +     D   +   +  +     ++  D +  I 
Sbjct: 76  PPKIVMLTTFNVPDTVKAALTAGANGFLLKDADPETLIESVRTVAAGQTVLAADVVGHIL 135

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
             A   A       V  G    LT RE+E L  I EGKT+ EIA  L IS  TV  ++++
Sbjct: 136 PGALTVAADTLPSHVQQGLSL-LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSN 194

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
           ++ K   + R      A +  +
Sbjct: 195 LLAKVHARDRVALAIIARKVGL 216


>gi|237799774|ref|ZP_04588235.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022629|gb|EGI02686.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 534

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 14/171 (8%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-------LTFDVARIRI 142
           +   ++ +      R           + + I    G      +       L        +
Sbjct: 363 VTSEQRLQALEQRARCVGAQLLELIAMTQQIDLLLGQSRLDEARVLLLRCLHAAAGGALL 422

Query: 143 GLMLLFPKGRIILRDRL-------WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               L  +    L ++L           LL  + A               L+ RE+  L 
Sbjct: 423 PFRTLLGEHAQWLHEQLLQAPHCKVRNALLEKFPACFIPLTPEPAHGSDCLSVRELGVLQ 482

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    ++
Sbjct: 483 LIAKGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGLL 533


>gi|261405324|ref|YP_003241565.1| LuxR family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|315645684|ref|ZP_07898808.1| transcriptional regulator, LuxR family protein [Paenibacillus
           vortex V453]
 gi|261281787|gb|ACX63758.1| transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10]
 gi|315279162|gb|EFU42472.1| transcriptional regulator, LuxR family protein [Paenibacillus
           vortex V453]
          Length = 74

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A+
Sbjct: 4   TDHNSKFLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAV 63

Query: 238 AYAVRNN 244
              ++  
Sbjct: 64  VELIKLG 70


>gi|149914006|ref|ZP_01902538.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
 gi|149812290|gb|EDM72121.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
          Length = 214

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 5/139 (3%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   +F      +         Y     D+ +I   ++ +   G  I         LLA 
Sbjct: 81  VVVSIFGDEARVLEAIQAGAKGYLLKGADLGQIGTDILSVLDGGSPISPGIARH--LLAV 138

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +     S +        LT RE E L  ++ G    EIA  LGIS  TV N+I SI RK
Sbjct: 139 VKDGGTGSVEPGLS---PLTEREAEILQAVARGYKRHEIAQHLGISAGTVGNHITSIYRK 195

Query: 228 TATKTRSGAIAYAVRNNIV 246
               T   A+A A +   +
Sbjct: 196 LEVSTNMEAVARASKKGFL 214


>gi|284041551|ref|YP_003391891.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945772|gb|ADB48516.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 243

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 75/177 (42%), Gaps = 4/177 (2%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
             ++++    P   +  + L++ D    +L+R  +        L  +   P        +
Sbjct: 66  GAEAVIGHHAPDVALVALDLADVDG-IVLLRRLAQRGSRSAVVLYTDADDPQQSAVALHA 124

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLW--EIGLLAAYQANMFKSY-DVHWGKDFELTGR 189
               V   R  +  L    R +   RLW  E G L      +     D+   +   L+  
Sbjct: 125 GAAGVIAKRRSIAELSNALRAVAAGRLWFNEPGDLPMPPRRLSPLLTDLRERRSSALSSA 184

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+  L  ++EG +++E A +L +S +TV  ++ ++MRK    +R+ A+A A+R + +
Sbjct: 185 ELRVLALVAEGSSTEEAAELLSLSPHTVRTHLRNVMRKLEASSRAHAVAIAIRESAI 241


>gi|260774409|ref|ZP_05883323.1| transcriptional regulator UhpA [Vibrio metschnikovii CIP 69.14]
 gi|260610536|gb|EEX35741.1| transcriptional regulator UhpA [Vibrio metschnikovii CIP 69.14]
          Length = 209

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 26/203 (12%)

Query: 57  GASHFLLVRWDL-----FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           G +  L V  D+     + + +   +  S  P D+V  M +S  D+    L    +   P
Sbjct: 16  GFAQLLNVEDDIQVVGEYGDAQAAFLALSKKPVDVV-IMDISMPDESGLSLLARLKTLHP 74

Query: 112 VFHTLPENI--------TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
            F  +  +I               + Y S     + +   + ++    R +  D L+ + 
Sbjct: 75  HFKAIILSIYDSASFVSKAIDSGASGYLSKRCGPSELVDAIRMVARGHRYLCADALFNL- 133

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                      S         ELT RE E    + +GK + EI  +L +S  TV+ + A+
Sbjct: 134 -----------SNPQEKNVLMELTKREREIFFLLIQGKDAKEIGQVLFLSYKTVHVHRAN 182

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K         I +A+++ ++
Sbjct: 183 ILNKLGLSNIVDLIRFAIQHRLL 205


>gi|256389326|ref|YP_003110890.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256355552|gb|ACU69049.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 233

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +          D R  +L   V  +  G  LL P     L  RL  +G++       
Sbjct: 103 FGAIMAGAAGYVLKDIRGSALVDAVRTVARGGSLLDPTATEKLLSRLR-VGIVPGEADR- 160

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               +    K   LT  E   L  I+EG T+ +I   L ++  TV NYI  I+ K A + 
Sbjct: 161 ----EAAASKLATLTVSEKRILELIAEGLTNRQIGERLNLAEKTVKNYITGILAKLAMQR 216

Query: 233 RSGAIAYAVRN 243
           R+ A A+AVR+
Sbjct: 217 RTQAAAFAVRH 227


>gi|195977721|ref|YP_002122965.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|225868974|ref|YP_002744922.1| response regulatory protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|195974426|gb|ACG61952.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|225702250|emb|CAX00006.1| response regulatory protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 198

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ +E+  L  I++GKTS EI+ IL +S  T+ NYI+SI  K     R  AI+ A 
Sbjct: 134 NPNPLSKQEMNILYLIAQGKTSKEISQILFLSNGTIRNYISSIFNKFGVSNRMEAISLAK 193

Query: 242 RNN 244
            N 
Sbjct: 194 ENG 196


>gi|325972574|ref|YP_004248765.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324027812|gb|ADY14571.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy]
          Length = 305

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           K   ++ RE E ++ + EG ++ EIA  L IS NTV  +I +I  K     R   
Sbjct: 245 KKLGISDREAEIVSLLVEGLSNQEIAKKLFISPNTVKTHIKNIYAKLEVNNRLQL 299


>gi|330810002|ref|YP_004354464.1| two-component response regulator NarL [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378110|gb|AEA69460.1| Putative two-component response regulator NarL [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 215

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           LL    R  L   L     L    A   +S       D ELT RE + L  I+ G ++  
Sbjct: 115 LLIQYIRDALNGALVISPGLTRVMAQALRSP--PRQADVELTERERQVLKTIAGGYSNKV 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           I   LGI+  TV  ++ +++ K   ++R  A  +A+ +
Sbjct: 173 IGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210


>gi|260428295|ref|ZP_05782274.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260422787|gb|EEX16038.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 220

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +++GK++ EIA  L I   TV  ++ ++ RK     R+ A  +A    +
Sbjct: 160 LSRREMEVLERLTQGKSNKEIARDLDIREPTVKLHVKTLYRKIGAANRTQAAIFAKEAGL 219


>gi|225022240|ref|ZP_03711432.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944963|gb|EEG26172.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 216

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 11/204 (5%)

Query: 50  YALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWPFDLV------RCMALSEKDKYYNVL 102
            AL   +G+   L +V      +  +D++     P DLV        +      K     
Sbjct: 16  RALATILGSQPDLEVVATVHDGQAAVDTVA--HTPVDLVLMDVRMPKLDGVAALKKIRAK 73

Query: 103 QRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
             P ++       +P+ +        N +     D   +   +  +     ++  D +  
Sbjct: 74  PNPPKIVMLTTFNVPDTVKAALTAGANGFLLKDADPETLIESVRTVAAGQTVLAADVVGH 133

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           I   A   A       V  G    LT RE+E L  I EGKT+ EIA  L IS  TV  ++
Sbjct: 134 ILPGALTVAADTLPSHVQQGLSL-LTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHV 192

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
           ++++ K   + R      A +  +
Sbjct: 193 SNLLAKVHARDRVALAIIARKVGL 216


>gi|50955085|ref|YP_062373.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951567|gb|AAT89268.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 223

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++      +   LT RE E     + G ++ EIA    +S  TV  +I+ I+ K   + R
Sbjct: 147 RAAQPVPAEFASLTSREREIFALAARGLSNAEIAGSEFLSEATVKTHISRILGKLGLRDR 206

Query: 234 SGAIAYAVRNNI 245
              + YA  + +
Sbjct: 207 VQMVVYAFEHGL 218


>gi|299140322|ref|ZP_07033486.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298597710|gb|EFI53884.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 200

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +H G +  LT RE+E L  I +G  + ++A ILGI+  TVN +I+++++K     R+ A+
Sbjct: 131 MHLGGE-HLTVRELEVLALIRDGHANKQVADILGIAETTVNFHISNLVKKLKANDRTHAM 189

Query: 238 AYAVRNNIV 246
           A AVR   +
Sbjct: 190 AIAVRRGFL 198


>gi|297559758|ref|YP_003678732.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844206|gb|ADH66226.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 220

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 8/187 (4%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPEN 119
            +    ++   +V S  P   +  + +   D      +          +    F      
Sbjct: 31  AEAADGREAVDLVLSHRPDVALLDIRMPRMDGLAATAEIRRVAPGTAVVILTTFGEDSYI 90

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                G  + +     D   +  G+  +   G  +         ++A +           
Sbjct: 91  SQALGGGASGFLLKAGDPRELIAGVHAVADGGAYLSPQ--VARQVIARFGGPRAAREAAA 148

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +  ELT RE E L  +  G ++ +IA  L +   TV +Y+++I+ +   + R  A   
Sbjct: 149 VARVEELTQREREVLALVGAGLSNADIADRLFLVEGTVKSYVSAILNRLEMRNRVQAAIL 208

Query: 240 AVRNNIV 246
           A    +V
Sbjct: 209 AHEAGLV 215


>gi|221633789|ref|YP_002523015.1| response regulator uvrY [Thermomicrobium roseum DSM 5159]
 gi|221156063|gb|ACM05190.1| response regulator uvrY [Thermomicrobium roseum DSM 5159]
          Length = 221

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 3/153 (1%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  +    L  PT       H     + P              +    +  + L  +G +
Sbjct: 67  EALRRIASLGLPTRTLILTVHAEERYLLPVLQAGGSGYVRKSSLHTDLVEAIRLVARGEV 126

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
            + D+     LL  Y  +          +   L+ RE E L   + G T+ EIA  L +S
Sbjct: 127 FI-DQAAARTLLQGYLDHARTGEVQDPAQ--LLSEREREVLRLTAAGYTAQEIADQLFLS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  Y   +M+K     RS  + +A+R  ++
Sbjct: 184 PKTVETYRHRVMQKLGFSRRSELVRFALRIGLL 216


>gi|239820082|ref|YP_002947267.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
 gi|239804935|gb|ACS22001.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 208

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  +++G  + +I   LGI   TV  ++ +I+RK    TR  AI  A R  ++
Sbjct: 144 TARELEVLRLMAQGLANKDIGRRLGIGEGTVKAHVKAILRKLRKPTRVAAIGEAFRCGLL 203


>gi|206562366|ref|YP_002233129.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198038406|emb|CAR54363.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 510

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           P  +  R C L    D++  +   M L       ++D  W    L    AN+ ++     
Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +
Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484

Query: 240 AVRNNIV 246
           A    IV
Sbjct: 485 ARERGIV 491


>gi|261405834|ref|YP_003242075.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329926559|ref|ZP_08280972.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
 gi|261282297|gb|ACX64268.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328939100|gb|EGG35463.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
          Length = 215

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 23/183 (12%)

Query: 77  IVSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
           +V+   P  L+  +++   +        +     E    +     ++      + N    
Sbjct: 41  MVAKHRPHVLLMDLSMPPGESGLIATGKISSEFPETKILILTMYDDDDYLFHVLKNGASG 100

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFE- 185
                      ++   P   +I   R+   G       +A      F   D    +    
Sbjct: 101 ----------YVLKNAPDDELISAIRMVHKGGTYIHPQMATSLVREFIKKDSESAEQDPF 150

Query: 186 --LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L  I++G  + EIA  L +S  TV  + A IM K   K+R   + YA++ 
Sbjct: 151 NSLSQREIEILPLIAKGYGNKEIAEKLFVSVKTVEAHKAKIMEKLKLKSRPELVEYALKK 210

Query: 244 NIV 246
            ++
Sbjct: 211 KLL 213


>gi|239918332|ref|YP_002957890.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839539|gb|ACS31336.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 209

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 16/166 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
            DL     +        V +R      L    F T  + +         Y         I
Sbjct: 56  MDLQMGAGMDGVTATRAVRERWPGVQVLILTTFDTEADILAAVNAGAAGYLLKDAPSEEI 115

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +       + +         + A     M    +V       L+ RE+E L  I+ G
Sbjct: 116 ASAVRQAAAGRKALAP------QVAATLMGRMSGGSEV-------LSEREIELLELIARG 162

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+   A  L IS  TV  ++  I +K     R+ A+  A R  I+
Sbjct: 163 ATNKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208


>gi|84497905|ref|ZP_00996702.1| regulatory protein, LuxR:Response regulator receiver [Janibacter
           sp. HTCC2649]
 gi|84381405|gb|EAP97288.1| regulatory protein, LuxR:Response regulator receiver [Janibacter
           sp. HTCC2649]
          Length = 218

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 8/154 (5%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFP 149
           S  +    +  R       +     +       M      Y    F   +I I  + L  
Sbjct: 60  SGIEACRAISDRAPRTKSLILTGSGDEGDLVEAMAAGASGYLLKDFPAQQI-IESLRLAH 118

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +G+ ++   +    L+           +    +   L+ RE+  L  + +GK + EIA  
Sbjct: 119 RGQALIPLGM-SSQLIRELSQPRQTPGESTTPR---LSDRELGVLQLVGQGKGNKEIAAQ 174

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L IS+NTV N+I +I  K    +R     +    
Sbjct: 175 LFISQNTVKNHIQNIRNKLNVGSRIELAMHGAEQ 208


>gi|312141565|ref|YP_004008901.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311890904|emb|CBH50223.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 283

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWISEGKTSDEIAVIL 210
           + DRL +  L A  +A   K   +  G     +  L+ RE E L  ++ G  + EIA  L
Sbjct: 187 IADRLDDAALTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAERL 246

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+  +T+ +Y+ +IM K    +R  A+  A R  ++
Sbjct: 247 GLRLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282


>gi|297195878|ref|ZP_06913276.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152976|gb|EFH32075.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 221

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +A + +      L     +    F              + +     
Sbjct: 49  DVVLMDIRMPVMDGLAATRRITGDERLADVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+A + A      +       ELT RE E + 
Sbjct: 109 EPEELLRAVRAVVEGDALLSPGVTRR--LIAEFAARSKGPAEAQGLG--ELTEREREVMA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|83955493|ref|ZP_00964124.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83840137|gb|EAP79312.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 220

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 21/181 (11%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPV--FHTLPENITPPAG- 125
             ++S+V  D P  ++  + + E         +L+R  +    +   H  PE I+     
Sbjct: 48  AAIESVVELD-PDVILMDLNMPEIGGLSATEILLERQPDTRIVILSMHDNPEYISSALSH 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         I++ +  +    R           L    Q ++             
Sbjct: 107 GAMGYILKDVPTDEIKLAIDTVMRGERY----------LCTGAQGSLEPKDAARES---- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  +++GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 153 LTEREQTILLQLAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|317970291|ref|ZP_07971681.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 228

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 18/174 (10%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
            S  P++L+ C    E    +++ ++             + + P   +          V 
Sbjct: 65  LSQEPYELLICTDFLESGSGFDLARKA------------KALQPQLKVVMLALGDAIPVE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGK-----DFELTGREVE 192
                 +         + D+   E  +LA    + ++S  +  G+        LT RE E
Sbjct: 113 HAEASWLEAVVAEADFIEDQKPLEAAVLAVMGHHAYRSPSLRSGQLPYLSCPRLTPREYE 172

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G T  EIA  L +S  T   Y   +++      R  A+   +R  +V
Sbjct: 173 VLDLLASGLTDREIAEQLVVSEETARTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226


>gi|195978994|ref|YP_002124238.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975699|gb|ACG63225.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 199

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+E L  IS+  ++++I+  L ISR TV+ ++++I  K    +R GA+  A++  +
Sbjct: 139 LTESEIEILRLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIKLKL 198

Query: 246 V 246
           +
Sbjct: 199 I 199


>gi|152964708|ref|YP_001360492.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151359225|gb|ABS02228.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 204

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 5/165 (3%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           WP +    + +  +      ++    L        PE     A M      +   VA   
Sbjct: 44  WPVERPSLVIMDVRMPGIGGVEAARRLLA----RHPEANVLMATMAEDGDGVARAVASGA 99

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G ++       +    L  +  ++  +    ++  V  G+   LT RE + L  +S G+
Sbjct: 100 RGYLVKDVSREELATAVLQALQDVSRRRGG-NRTRAVLTGRAPVLTEREQQVLVGMSRGR 158

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EI   L +S +TV  +   + RK     R+ A+A   R  +V
Sbjct: 159 SNAEIGRELFLSEDTVKTHARRLFRKLEAADRAQAVAVGFRWGLV 203


>gi|146319339|ref|YP_001199051.1| response regulator [Streptococcus suis 05ZYH33]
 gi|146321541|ref|YP_001201252.1| response regulator [Streptococcus suis 98HAH33]
 gi|253752368|ref|YP_003025509.1| response regulator protein [Streptococcus suis SC84]
 gi|253754194|ref|YP_003027335.1| response regulator protein [Streptococcus suis P1/7]
 gi|253756128|ref|YP_003029268.1| response regulator protein [Streptococcus suis BM407]
 gi|145690145|gb|ABP90651.1| Response regulator [Streptococcus suis 05ZYH33]
 gi|145692347|gb|ABP92852.1| Response regulator [Streptococcus suis 98HAH33]
 gi|251816657|emb|CAZ52298.1| response regulator protein [Streptococcus suis SC84]
 gi|251818592|emb|CAZ56426.1| response regulator protein [Streptococcus suis BM407]
 gi|251820440|emb|CAR47123.1| response regulator protein [Streptococcus suis P1/7]
 gi|319758772|gb|ADV70714.1| response regulator [Streptococcus suis JS14]
          Length = 200

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  D+   +   LT  E + L  ++EG ++ EIA  L +S  TV NY+ S
Sbjct: 117 VLAGRKEYSPELMDILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTS 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+  A    
Sbjct: 177 ILSKLGAENRTAAVKVAQEKG 197


>gi|116691570|ref|YP_837103.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649570|gb|ABK10210.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
          Length = 510

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           P  +  R C L    D++  +   M L       ++D  W    L    AN+ ++     
Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +
Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484

Query: 240 AVRNNIV 246
           A    IV
Sbjct: 485 ARERGIV 491


>gi|291299247|ref|YP_003510525.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568467|gb|ADD41432.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 188

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 7/170 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V +D     +  + L+ +     V  +   +    F       +        Y     
Sbjct: 21  DVVLADIRMPGIDGLELTRRLAGPEVADKLRVVVVTTFDLDEYVYSALRDGACGYLLK-- 78

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                R G  LL    R  +         +           +        L+ RE+E + 
Sbjct: 79  -----RSGPTLLVEAIRAAMTGDTLISPQITVRLLREMMRPEPKSADTSVLSERELEVVA 133

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +++G T+ EIA  L IS  T  N++A++  K     R G  A+A    +
Sbjct: 134 LVAQGLTNAEIAEKLFISAGTAKNHLANVQAKLGVGNRVGIAAWAWETGV 183


>gi|251795472|ref|YP_003010203.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|304408019|ref|ZP_07389669.1| transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|247543098|gb|ACT00117.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2]
 gi|304343038|gb|EFM08882.1| transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 74

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A+   ++ 
Sbjct: 10  FLLTHREREVFELLVQDKTTRDIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKL 69

Query: 244 N 244
            
Sbjct: 70  G 70


>gi|62289334|ref|YP_221127.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|82699262|ref|YP_413836.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023586|ref|YP_001934354.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|237814824|ref|ZP_04593822.1| LuxR family DNA-binding response regulator [Brucella abortus str.
           2308 A]
 gi|254696773|ref|ZP_05158601.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729682|ref|ZP_05188260.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 4
           str. 292]
 gi|260545913|ref|ZP_05821654.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260757346|ref|ZP_05869694.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761170|ref|ZP_05873513.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|62195466|gb|AAX73766.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1
           str. 9-941]
 gi|82615363|emb|CAJ10326.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Brucella melitensis biovar Abortus 2308]
 gi|189019158|gb|ACD71880.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|237789661|gb|EEP63871.1| LuxR family DNA-binding response regulator [Brucella abortus str.
           2308 A]
 gi|260097320|gb|EEW81195.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260667664|gb|EEX54604.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671602|gb|EEX58423.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 213

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +    K   L+ RE + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G 
Sbjct: 140 ESGEKKSEGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGL 199

Query: 237 IAYAVRNNI 245
             YA+ N +
Sbjct: 200 TRYAIENRL 208


>gi|333001333|gb|EGK20901.1| response regulator [Shigella flexneri VA-6]
          Length = 215

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 95  VFALIDAGADGYLLKDSDPEVLLEAIRTGAKGNKVFSERVNQYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 200 SRVAATILFLQQR 212


>gi|251799214|ref|YP_003013945.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546840|gb|ACT03859.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 217

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+  Y   M +           L+ RE E L+  ++G  + E+A +L IS  TV  + ++
Sbjct: 134 LMKEYVDRMQRGDSGDL--FHALSEREKEVLSLTAKGYANKEMAEMLVISVKTVETHKSN 191

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +M K   K+R   I YA++  ++
Sbjct: 192 VMEKLGLKSRPELIKYAMKKGLL 214


>gi|258592075|emb|CBE68380.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 89

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +D  + +   LT REVE LTW+++GKT+ EI  IL  S  TV  ++  I  K   
Sbjct: 10  HDNIFSERLGLTRREVEVLTWVTDGKTNAEIGEILDTSPRTVQKHLEHIFEKLGV 64


>gi|238059423|ref|ZP_04604132.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237881234|gb|EEP70062.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 970

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 46/118 (38%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
             R     + VA+      L      +  R R+      A+         +    +   L
Sbjct: 851 AGRLLREAYQVAQGLGAEPLSTEIRTLAARARVALEERGASADGRSVTRAEPVGDELAVL 910

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E L  ++EG T+ EI   L IS  T+  +++ I  K   +TR  A A  +RN 
Sbjct: 911 TTREREVLAAVAEGLTNKEIGQRLFISERTIGVHVSHIFDKLQVRTRVQASAIFLRNR 968


>gi|258650793|ref|YP_003199949.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554018|gb|ACV76960.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 215

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 7/164 (4%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L+  +  +      +V   P  +       L E +        R   L  D     + 
Sbjct: 58  MPLMDGIEATRLLAGPDVTD-PLPIVVITTFDLDEYVHGALKAGARGFLLK-DAGPALLT 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
             +          D L    +     A   ++      +  E LT RE E L  +++G+T
Sbjct: 116 QAIHAAADG----DALIAPSVTVRLLAAFAQAPTSPPRQPLEPLTAREEEVLVTVAQGRT 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L I+ +TV  ++AS+MRK   + R     +A     +
Sbjct: 172 NSEIASQLFITSSTVKAHVASLMRKLGARNRVEVAMWAHETGRI 215


>gi|4322356|gb|AAD16025.1| regulatory protein CsgD [Escherichia coli]
          Length = 83

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 2   LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 61

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 62  FKKIAVKNRTQAVSWA 77


>gi|297156203|gb|ADI05915.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 1003

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
             LPE+      +  +  ++  ++    +   +    GR  +  R           A+  
Sbjct: 879 QRLPESRETAGELLRQAEAVARELGAAPLETEITTLAGRARIPLR----------HADEE 928

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +          LT RE + L  ++ G+++ +IA  L IS  T + ++++IM K     R
Sbjct: 929 TAPPPTPAAALGLTARERDVLRLVAAGRSNRQIAEELFISPKTASVHVSNIMAKLGASGR 988

Query: 234 SGAIAYAVRNN 244
             A A A R  
Sbjct: 989 GEAAAIAHRLG 999


>gi|282801728|gb|ADB02831.1| AzicR2 [Kibdelosporangium sp. MJ126-NF4]
          Length = 214

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +LA   A +  S  V       L+ RE+E L  ++EG T+ E A  L ++  T+ +++ 
Sbjct: 124 AVLAPSAAALLMSR-VRASAAGPLSQRELEVLHLVAEGATNREAAARLFLTEATIKSHLL 182

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I  K     R+ A+       ++
Sbjct: 183 NIYGKLGVSDRAAAVTAGFNRGLL 206


>gi|222082720|ref|YP_002542085.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727399|gb|ACM30488.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 217

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 166 AAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           A     M    D     +     LT RE E L  ++ G+T+  IA  L IS  TV  ++ 
Sbjct: 129 ADLMCKMLARIDRESPAEMVIERLTNREREILCSLTTGETNKGIARALSISPGTVKVHVE 188

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+ K     R+ A   A++  ++
Sbjct: 189 RILSKLGVNDRTQAAVLAIQAGLL 212


>gi|331694595|ref|YP_004330834.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|331696119|ref|YP_004332358.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949284|gb|AEA22981.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950808|gb|AEA24505.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 214

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 40/86 (46%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L +    A+    + +  D    +   L+ +E   L  +++G T+ +I   L ++  TV 
Sbjct: 126 LLDPKATASVLERLRRGEDTEDPRYAGLSPQERRILDLVADGLTNKQIGAELFLAEKTVK 185

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNN 244
           NY++S++ K     R+ A  YA R  
Sbjct: 186 NYVSSLLHKLGFSRRTEAAVYAERRR 211


>gi|120404927|ref|YP_954756.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957745|gb|ABM14750.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
          Length = 399

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +VH      LT REVE L  ++ G+T+ +IA  L IS  TV +++  ++RK     R+ A
Sbjct: 325 EVHTRVLGMLTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHVKRVLRKLHATNRAEA 384

Query: 237 IAYAVRNNI 245
            +  VR  I
Sbjct: 385 ASAYVRLAI 393


>gi|308272248|emb|CBX28854.1| hypothetical protein N47_B20000 [uncultured Desulfobacterium sp.]
          Length = 225

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG     I   L IS  TV N+ A+IM K    +    + YA +  +
Sbjct: 158 LTPREQEVLRLLAEGMAPKAIGEKLFISPKTVENHRANIMSKLDLHSILDLVRYAAKVGL 217

Query: 246 V 246
           +
Sbjct: 218 I 218


>gi|256783407|ref|ZP_05521838.1| LuxR family transcriptional regulator [Streptomyces lividans TK24]
          Length = 175

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G ++  I   L IS  T + ++++I+ K    +R+ A+A A R  +
Sbjct: 107 LTAREQDVLRLLALGHSNRRIGEELFISAKTASVHVSNILAKLNAASRTEAVAVAHRQGL 166

Query: 246 V 246
           V
Sbjct: 167 V 167


>gi|88855004|ref|ZP_01129669.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88815532|gb|EAR25389.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 221

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 4/155 (2%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +E+      L     +    F              + +     +   +   + ++    
Sbjct: 65  ATEQIATIPELSETRIVVVTTFEVDEYVARAIRAGASGFLVKDTEPVELIRAVRVVASGD 124

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            ++         LL  +      + D         T RE E L  + +G T+ EI V L 
Sbjct: 125 ALLSPGVTKR--LLERFARGSQVAVDASVLSVI--TDREREVLALVGQGLTNAEIGVKLF 180

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  T   +++ IM K A + R   +  A    +V
Sbjct: 181 LSPLTAKTHVSRIMAKLAARDRVQLVVIAYETGLV 215


>gi|170736431|ref|YP_001777691.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254249144|ref|ZP_04942464.1| PAS/PAC domain [Burkholderia cenocepacia PC184]
 gi|124875645|gb|EAY65635.1| PAS/PAC domain [Burkholderia cenocepacia PC184]
 gi|169818619|gb|ACA93201.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 510

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           P  +  R C L    D++  +   M L       ++D  W    L    AN+ ++     
Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +
Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484

Query: 240 AVRNNIV 246
           A    IV
Sbjct: 485 ARERGIV 491


>gi|219667288|ref|YP_002457723.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219537548|gb|ACL19287.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 215

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 37/86 (43%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +  L      +M+     +      LT RE E L +I+ G T+ EI   L +S  TV  +
Sbjct: 128 DSSLAQNLVKSMYSPRKDNNRSASNLTEREKEVLRYIALGYTNKEIGESLSVSVKTVETH 187

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
            A IM K     RS  + YA+    +
Sbjct: 188 KARIMEKIQCHKRSDLVRYAIEQGYI 213


>gi|256420485|ref|YP_003121138.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035393|gb|ACU58937.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 208

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+        S  V   K+F  LT RE E L+ ISEG T+ EIA  L IS +TVN++   
Sbjct: 125 LSPVIKQAMSSERVGLQKNFPPLTRREKEVLSLISEGNTNAEIAEKLFISADTVNSHRKK 184

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K   K  +  I YAV N ++
Sbjct: 185 LLAKLEVKNTAMLIKYAVDNKLL 207


>gi|289425149|ref|ZP_06426926.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289426574|ref|ZP_06428314.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295130635|ref|YP_003581298.1| putative Hemoglobin-dependent two component system response
           regulator HrrA [Propionibacterium acnes SK137]
 gi|289154127|gb|EFD02815.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289160218|gb|EFD08382.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291377220|gb|ADE01075.1| putative Hemoglobin-dependent two component system response
           regulator HrrA [Propionibacterium acnes SK137]
 gi|313764411|gb|EFS35775.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772207|gb|EFS38173.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313792097|gb|EFS40198.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313801951|gb|EFS43185.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313807563|gb|EFS46050.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810072|gb|EFS47793.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313812898|gb|EFS50612.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815948|gb|EFS53662.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818604|gb|EFS56318.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313825246|gb|EFS62960.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313827534|gb|EFS65248.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313830402|gb|EFS68116.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313833772|gb|EFS71486.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313838777|gb|EFS76491.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314915403|gb|EFS79234.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918316|gb|EFS82147.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314920126|gb|EFS83957.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314931648|gb|EFS95479.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955704|gb|EFT00106.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958103|gb|EFT02206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314959957|gb|EFT04059.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314962754|gb|EFT06854.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314967878|gb|EFT11977.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314973404|gb|EFT17500.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314976083|gb|EFT20178.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314978528|gb|EFT22622.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314983897|gb|EFT27989.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988079|gb|EFT32170.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989886|gb|EFT33977.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315077971|gb|EFT50022.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315080596|gb|EFT52572.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315084266|gb|EFT56242.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315085610|gb|EFT57586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315088338|gb|EFT60314.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095949|gb|EFT67925.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315098580|gb|EFT70556.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101419|gb|EFT73395.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315108635|gb|EFT80611.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327326231|gb|EGE68021.1| DNA-binding response regulator VraR [Propionibacterium acnes
           HL096PA2]
 gi|327331894|gb|EGE73631.1| DNA-binding response regulator VraR [Propionibacterium acnes
           HL096PA3]
 gi|327443096|gb|EGE89750.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327445878|gb|EGE92532.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448140|gb|EGE94794.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327450738|gb|EGE97392.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327453185|gb|EGE99839.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327453920|gb|EGF00575.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328753426|gb|EGF67042.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328754157|gb|EGF67773.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328754593|gb|EGF68209.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328760809|gb|EGF74375.1| DNA-binding response regulator VraR [Propionibacterium acnes
           HL099PA1]
 gi|332675478|gb|AEE72294.1| nitrate/nitrite response regulator protein NarP [Propionibacterium
           acnes 266]
          Length = 210

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G LA   A    +          LT RE++ L   ++G ++ +IA  L +S  TV  +++
Sbjct: 128 GALAPAVATRLMAR--MRSPRTSLTARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +RS A+A A     +
Sbjct: 186 HIYTKLGVTSRSAAVAKARDIGFI 209


>gi|302532622|ref|ZP_07284964.1| two-component system response regulator [Streptomyces sp. C]
 gi|302441517|gb|EFL13333.1| two-component system response regulator [Streptomyces sp. C]
          Length = 226

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 71/178 (39%), Gaps = 11/178 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDN 128
            ++  + P  ++  + + + D    VL++  EL  P        F T    +T      +
Sbjct: 40  DVIRRELPDVVLLDIRMPDVDG-LTVLRQIQELPEPPHVAMLTTFDTDEYILTALRSGAS 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     +  ++   +  L   G ++         LL  +        D    +   L+ 
Sbjct: 99  GFLLKDTEPEQLAQLVRTLAAGGVVMSPKASR--ALLRGHPG-AGAPQDADVARVGLLSD 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  I++G ++ +I   + +S+ TV ++++SI+ K    +R  A   A R  ++
Sbjct: 156 RERDVLVLIADGLSNADIGTRIHLSQGTVKDHVSSILTKLRVTSRVQAALLAERAGLL 213


>gi|300782049|ref|YP_003762340.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791563|gb|ADJ41938.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 222

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E+T RE E L  ++ G ++DEIA  L IS  T   +++ IM K   + R+  +  A  + 
Sbjct: 155 EITDREREVLGLVAGGMSNDEIAAHLVISTATARTHVSRIMTKIGARDRAQLVVLAYESG 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|298242939|ref|ZP_06966746.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555993|gb|EFH89857.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 928

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 75/196 (38%), Gaps = 27/196 (13%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEK-----DKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +   +++   P + +  +   +      +++ +V++   ++   + H++ +      
Sbjct: 725 DVARARILLAQKMPTEALSLLDSLQVRAEKQERWSHVIE--MKVLQALAHSMCDEDREAC 782

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---------GLLAAYQANMF-- 173
            +  +   L       RI +        ++   R  E           LLAA+ +     
Sbjct: 783 AILAQAVQLAEPENYTRIFVDEGARMKALLSHLREQERKKGPTAYLDALLAAFSSESVTH 842

Query: 174 ---KSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
              K  D   G+  E      L+ RE+E L  I+ G ++ +IA +L I+ +TV  ++  I
Sbjct: 843 ISPKGGDQSRGRIQERPLVEPLSERELEVLHLIARGDSNQKIAEMLMITLDTVKRHVTHI 902

Query: 225 MRKTATKTRSGAIAYA 240
             K     R  A+A A
Sbjct: 903 FEKLGVSNRVQAVARA 918


>gi|297190931|ref|ZP_06908329.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150692|gb|EFH30738.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 83

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           M +  D    +  E LT RE E     + G T++EIA  + IS  T   +I+  M K   
Sbjct: 1   MARPPDRSTARGMENLTRREREVTALAARGLTNEEIAAHMVISPFTAKTHISRAMNKLGA 60

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+  + +A  + +V
Sbjct: 61  RDRAQLVVFAYESGLV 76


>gi|256379677|ref|YP_003103337.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923980|gb|ACU39491.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 953

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L +     A +  +    +V  G+    T RE   L  ++ G+T+ E+   L IS  TV+
Sbjct: 862 LRDAVRQTARRGRVVLRGEVPGGQVDPFTPRERSVLALVALGRTNREVGEELVISEKTVS 921

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  IM K     R  A+A A    ++
Sbjct: 922 VHLTRIMAKLGAGRRGEAVAIAFERGLL 949


>gi|126659693|ref|ZP_01730822.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp.
           CCY0110]
 gi|126619038|gb|EAZ89778.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp.
           CCY0110]
          Length = 90

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 41/67 (61%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +     L+GRE++ +  +S G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   +
Sbjct: 4   AKFQNPVSLSGREMQIVDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELV 63

Query: 238 AYAVRNN 244
            +A++  
Sbjct: 64  RWALQWG 70


>gi|87302655|ref|ZP_01085472.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701]
 gi|87282999|gb|EAQ74956.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701]
          Length = 237

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                     R      L+     ++      E  L          S D        L+ 
Sbjct: 115 EASCDGICADRGVGFGHLVAATRAVLGGGFYMEPQLRDLLALACRASRDPAGP---GLSA 171

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  + +G  + +IA  + +S  TV +++ S  +K     R+ A   AV   +V
Sbjct: 172 RELEVLELVVQGYQNPQIASRMHLSVETVRSHLKSAFQKLGATGRTHAAVMAVCQGLV 229


>gi|94314084|ref|YP_587293.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357936|gb|ABF12024.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 231

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  +++G  + EIA  L +SR TV  +I  I RK A  +R+ AI  A    +
Sbjct: 170 LSPREHQILRLVADGLGNREIAERLFLSRYTVECHIKHIYRKLAVSSRTRAINAARSRGL 229

Query: 246 V 246
           +
Sbjct: 230 L 230


>gi|298250270|ref|ZP_06974074.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548274|gb|EFH82141.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 596

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L     ++G L  Y + +  +  +   +    T RE E +  + +G ++ EIA  L IS 
Sbjct: 492 LPQADNQLGNLTNYYSAVQTTPTLKHARRELFTQRENEVINLLLQGASNREIAAKLIISE 551

Query: 215 NTVNNYIASIMRKTATKTRSGAIAY 239
            TV  ++A+I  K   K+R+ A+A 
Sbjct: 552 GTVKKHVANICGKLEVKSRTQALAK 576


>gi|288961577|ref|YP_003451887.1| two-component response regulator [Azospirillum sp. B510]
 gi|288913857|dbj|BAI75343.1| two-component response regulator [Azospirillum sp. B510]
          Length = 217

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 10/200 (5%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV-RCMALSEKDKYYNVL- 102
           +   +  L E +   +        F E  LD   S D  +DLV   + +     +  +  
Sbjct: 12  FREGLRRLLEQL-RENATFAEASNFDE-LLDMAASKDEAYDLVLTDLRMPGWPGFSGIGM 69

Query: 103 ---QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLMLLFPKGRIILRD 157
              ++P      V  +  ++    A  +    Y   +  V  +   L L+F  G  +   
Sbjct: 70  LRDRQPNAKVVVVSASEAQSDVREALENGAAGYIPKSSSVKIMLSALDLIFSGGVYVPAT 129

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            L E G     ++            +  LT R+ E L  + EGK++ +IA  LG+S  TV
Sbjct: 130 VLRE-GAEPDQRSGGGVIPPTDPQLEQLLTQRQREVLDRLREGKSNKQIAHELGLSEGTV 188

Query: 218 NNYIASIMRKTATKTRSGAI 237
             ++ +I +    + R+ A 
Sbjct: 189 KIHMTAIFKSLGVRNRTQAA 208


>gi|327330788|gb|EGE72534.1| two-component system response regulator [Propionibacterium acnes
           HL097PA1]
          Length = 83

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 38/75 (50%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M +   V   K  +LT RE+E    ++ G ++ EIA  L +S  TV  ++++ + K   +
Sbjct: 1   MHQGGTVTGSKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLR 60

Query: 232 TRSGAIAYAVRNNIV 246
            R   +A A  + ++
Sbjct: 61  DRVQLVALAYESGLI 75


>gi|326443616|ref|ZP_08218350.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC
            27064]
          Length = 1016

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%)

Query: 158  RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            RL      +        +     G    LT RE + L  +S G+++ +IA  L IS  T 
Sbjct: 922  RLALPASASGPDGPHGPAAAPEPGPGLGLTPREEDVLRLVSAGRSNRQIAQTLSISPKTA 981

Query: 218  NNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + ++++I+ K     R  A A A R  +
Sbjct: 982  SVHVSNILAKLGVSGRGEAAALAHRLRL 1009


>gi|320322570|gb|EFW78663.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320330177|gb|EFW86163.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330875366|gb|EGH09515.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330987495|gb|EGH85598.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 209

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D+  G    LT R+ E L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS 
Sbjct: 137 SDLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVSTRSA 196

Query: 236 AIA 238
           A A
Sbjct: 197 AAA 199


>gi|297158223|gb|ADI07935.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 212

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 13/157 (8%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLMLLFP 149
           L        ++ R       +  T   +     G++       L           +    
Sbjct: 64  LDGVGATAEIVARHPRTRVLILTTYDTDQDIERGVEAGAIGYLLKDTTREQLADAIRSAA 123

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +G  +L  R+ E  L+A           +       LT RE + L  +++G T+ EI   
Sbjct: 124 RGETVLAPRVAE-KLIAR----------MRRPVQDPLTARETDVLNAVADGLTNAEIGKR 172

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 173 LVITEATVKTHLLRLFAKLDVNDRTRAVVVALERGLL 209


>gi|300779885|ref|ZP_07089741.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533995|gb|EFK55054.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 222

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I+ G T+ EI+  L I+  TV  ++ +++ K   + R   +  A R  I
Sbjct: 161 LTAREVEVLAEIAAGATNAEISQRLFIAPTTVKTHVKNLLVKLGARDRVALVLLAHRAGI 220


>gi|153852992|ref|ZP_01994429.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814]
 gi|149754634|gb|EDM64565.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814]
          Length = 223

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 6/174 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V  + P  ++  + + + D       +    +E+   +  T  ++      +    + Y 
Sbjct: 43  VRKNRPDVILMDIRMPKMDGVQCTKIIKDNYSEIKIIILTTFDDDEYVYNALKWGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                +  +   +  ++    +I  D   ++  L +  A      DV   +   LT  E 
Sbjct: 103 LKGVSMDGLTNAIRTVYSGQAMINPDIATKVVRLFSQMAKADYVVDVDQKRTENLTKTEW 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +  +  G ++ EIA  L +S  TV NY++ I+ K   + R+    +AV+N +
Sbjct: 163 KIINEVGRGSSNKEIAENLNLSEGTVRNYLSGILNKLEFRDRTQLAIWAVQNKV 216


>gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 242

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 21/184 (11%)

Query: 83  PFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITP------PAGMDNRYCSL 133
           P  ++  + +   D Y     + +       PV     + +T        AG+D+ Y   
Sbjct: 59  PDVVISDVMMPRCDGYGLLKRLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDD-YIPK 117

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLA---AYQANMFKSYDVHWGKD--- 183
            FD   +   +  +  +   +L +       ++  +A       +M    D +  K    
Sbjct: 118 PFDPDELIARVRNVVKRQERLLTEAARFADTDVSQMAKQITEIRSMLTQGDKNNSKKDLI 177

Query: 184 -FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
               T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ 
Sbjct: 178 IPNFTPREESVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALE 237

Query: 243 NNIV 246
           NN+V
Sbjct: 238 NNLV 241


>gi|332669618|ref|YP_004452626.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338656|gb|AEE45239.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 224

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 11/145 (7%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y +   D   +   +  +     +           L
Sbjct: 87  RFLALSVSDAAEDVVAVIRSGARGYVTKAIDGGELSDAVRRVAGGDAVFSP-------RL 139

Query: 166 AAYQANMF--KSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           A +  + F   + DV  G D    L+ RE E +  I+ G T  E+A  L IS  TV  ++
Sbjct: 140 AGFVLDAFGAAAGDVATGDDELDRLSAREREVMRLIARGYTYREVASELFISVKTVETHV 199

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++RK    +R     +A    ++
Sbjct: 200 SAVLRKLQLSSRHELTRWAAARRLL 224


>gi|325277057|ref|ZP_08142715.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097807|gb|EGB95995.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 491

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELT 187
           Y  +  D+   +   + L      +++D  W    L    AN  +            +LT
Sbjct: 371 YLLVLMDITERKRSELELVEAIETVMQDASWFSQTLIEKLANAKRINTGRLPDASFTDLT 430

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A    +
Sbjct: 431 RRERDVLALICEGLADKEIAARLNLALNTVRNHVATVYSKLDVHSRSEAIVWARERRL 488


>gi|315181312|gb|ADT88226.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC
           11218]
          Length = 216

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  Y+         H     ELT RE++ L  +  G ++ ++A  L IS  T
Sbjct: 130 PRHVSSQLLHYYRHIF---QHHHTQATIELTTRELQILRSLQTGASNMQMAESLFISEFT 186

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243
           V +++  I +K + K R+ AI +A +N
Sbjct: 187 VKSHLYQIFKKLSVKNRTQAITWANQN 213


>gi|312621234|ref|YP_004022847.1| LuxR family transcriptional regulator [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201701|gb|ADQ45028.1| transcriptional regulator, LuxR family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 74

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + ELT RE E +  I++G ++ EI+  L IS  TV  YI  IM K   ++R    AY  
Sbjct: 7   NNSELTKREKEIIKLIAKGYSNKEISSFLNISEGTVKTYIKIIMLKLNARSRVEIAAYYF 66

Query: 242 RN 243
           +N
Sbjct: 67  QN 68


>gi|269216845|ref|ZP_06160699.1| putative HTH-type transcriptional regulator MalT [Slackia exigua
           ATCC 700122]
 gi|269129652|gb|EEZ60736.1| putative HTH-type transcriptional regulator MalT [Slackia exigua
           ATCC 700122]
          Length = 787

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E++ L  I + K++ EI  +LGI  +TV  +++ I+ K     R  A   A R +
Sbjct: 726 PLTKTEIQVLHLICQDKSNVEIGELLGIKLSTVKTHVSHILAKLGVSRRVQAAREARRLH 785

Query: 245 IV 246
           +V
Sbjct: 786 LV 787


>gi|11344597|gb|AAG34369.1|AF197465_1 nitrate/nitrite response regulator [Pseudomonas fluorescens]
          Length = 215

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           LL    R  L   L     L    A   +S       D ELT RE + L  I+ G ++  
Sbjct: 115 LLIQYIRDALNGALVISPGLTRVMAQALRSP--PRQADVELTERERQVLKTIAGGYSNKV 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           I   LGI+  TV  ++ +++ K   ++R  A  +A+ +
Sbjct: 173 IGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210


>gi|21230300|ref|NP_636217.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769706|ref|YP_244468.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992921|ref|YP_001904931.1| Putative transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21111849|gb|AAM40141.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575038|gb|AAY50448.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734681|emb|CAP52891.1| Putative transcriptional regulator, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 235

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--DRLWEIG----LLAAYQANMF 173
           + PP   + R   L   +    +G++ +      +    D L  +     LL A  A   
Sbjct: 96  LMPPRPAEMRDARLPIQLLGTTLGMVCVAWNDGRLAPGSDDLQALQAFALLLPAMVAEPA 155

Query: 174 KSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +       K  +      L+ RE + L+ +  G T+  +A  LGIS  TV  ++  I++K
Sbjct: 156 RPVATRRRKAVQDDRLSALSKREKQVLSLLPRGLTNATLAAELGISPGTVKVHVERILQK 215

Query: 228 TATKTRSGAIAYAVRNNI 245
              K R+ A  YAV   +
Sbjct: 216 LEVKDRTQAAVYAVHAGL 233


>gi|118619050|ref|YP_907382.1| two component transcriptional regulatory protein [Mycobacterium
           ulcerans Agy99]
 gi|118571160|gb|ABL05911.1| two component transcriptional regulatory protein [Mycobacterium
           ulcerans Agy99]
          Length = 218

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            GL+      + ++ D    +   LT RE E L ++++G ++ +IA  L +S  TV N++
Sbjct: 134 AGLVLGEYRRIAQTADSSQDRP-SLTERETEILRYVAKGLSAKQIAEKLSLSHRTVENHV 192

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
            +  RK     R     YA+ + +
Sbjct: 193 QATFRKLQLANRVELTRYAIEHGL 216


>gi|323498997|ref|ZP_08103979.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|323315933|gb|EGA68962.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 210

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L L     +   ++       +A Y A+   S DV      
Sbjct: 98  AGADGYLLKDTEPDELVDLLKLSLRGNKAYSQE-------VAKYLADRENSSDV----FD 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ELT RE++ L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A  
Sbjct: 147 ELTDREMQILREVAKGDRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAATV 200


>gi|260425367|ref|ZP_05779347.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp.
           SE45]
 gi|260423307|gb|EEX16557.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp.
           SE45]
          Length = 242

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 77/243 (31%), Gaps = 31/243 (12%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW-----DLFQEQKLDSIVSS 80
           +P     L ++   +          AL +     H L+  W     + +     D +   
Sbjct: 7   IPVTGGFLEQLELAERREDLQSVAEALRDRFKVDH-LVYHWVSANGEQYGCGTYDPV--- 62

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRY 130
                 V         +   V+Q   + F PV               +      G+ N+ 
Sbjct: 63  -----WVERYLEKGYLRIDPVIQGCFQRFHPVDWKRLDWSSKAARAFQWDAIAHGVGNQG 117

Query: 131 CSLTFDVARIRIGLMLLFPKGR-----IILRDRLWEIGLLAAY--QANMFKSYDVHWGKD 183
            S+       +  L  +                  ++ L+A Y  Q  +           
Sbjct: 118 YSIPIRGPNGQFALFTVNHSCDDEAWAEFTALNRRDMILIAHYFNQKALELEPGRRPEPA 177

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +T I+ G +  ++A  L IS +T+  YI S   K      + A+A A+  
Sbjct: 178 QPLSPREIEAMTLIAVGYSRAQVAETLSISEHTLRVYIESARFKLGAMNTTHAVARALSR 237

Query: 244 NIV 246
            ++
Sbjct: 238 GLI 240


>gi|269793167|ref|YP_003318071.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100802|gb|ACZ19789.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 211

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++  S  V  G   EL+ RE E L   S G  S EIA  L IS  TV  ++ASI  K   
Sbjct: 126 DLEASDLVSSGPTEELSQREREVLLLASRGLASKEIASRLVISDRTVQAHLASIYGKLGA 185

Query: 231 KTRSGAIAYAVRNNIV 246
           + ++ A+   +++ I+
Sbjct: 186 RNKTEAMLLGLKHGIL 201


>gi|197123248|ref|YP_002135199.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220918037|ref|YP_002493341.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196173097|gb|ACG74070.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
 gi|219955891|gb|ACL66275.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 215

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y    F  A +   +  +       +  R  ++ LL  ++ +     D      
Sbjct: 95  RAGASGYILKPFHAADLTKAVEDVLSGEAAPISPRAAKV-LLQEFRGD---PPDQRAKDG 150

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L  +  G T  ++A  LGI+  TV  Y+  I  K    T++ A   AV  
Sbjct: 151 PALSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVAR 210

Query: 244 NIV 246
            +V
Sbjct: 211 GLV 213


>gi|325917865|ref|ZP_08180041.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535911|gb|EGD07731.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 210

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 75/217 (34%), Gaps = 16/217 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+   D  +     + AL +  G      V  +    Q L   +++     ++  + +  
Sbjct: 5   RIALADDQILVRAGLRALLQQQGVE----VACEADDGQALLDALTTTSVDVVLSDIRMPG 60

Query: 95  KDKYYNVLQ-RPTELFCPVF----HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            D    ++Q R      PV         + +        +   L           +    
Sbjct: 61  VDGIQALVQLRARGDRTPVLLLTTFDDSDLLLRATEAGAQGFLLKDAAPEDLRDAIARVA 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G  +L+    +         +     +         + REV  L  ++ G ++ EIA  
Sbjct: 121 AGETLLQPVSTDPVRARYQFRDQQPPSET-------FSEREVAILRLLAGGYSNKEIART 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 174 LFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210


>gi|302549505|ref|ZP_07301847.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467123|gb|EFL30216.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 219

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L+   + A  +  + ++ +        +T RE E L  ++EG TS +IA +L IS  TV 
Sbjct: 130 LYPGAVNALVRDFLDRAREGRALPSRAITDREEEILKLVAEGHTSQQIADLLVISPKTVE 189

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + A++++K   K R     YA+R  ++
Sbjct: 190 RHRANLLQKLGLKDRLELTRYAIRVGLI 217


>gi|239816522|ref|YP_002945432.1| LuxR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803099|gb|ACS20166.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 1022

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 37/68 (54%)

Query: 178  VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +       L+ RE+  L  +  G ++  IA  L IS +TV +++  I+ KT  ++R+ A 
Sbjct: 948  MPSASPEGLSRRELAVLRLLCAGCSNQAIAERLFISPHTVAHHVRHILSKTDCRSRTEAA 1007

Query: 238  AYAVRNNI 245
            A+A R+ +
Sbjct: 1008 AWAHRHRV 1015


>gi|254510783|ref|ZP_05122850.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534494|gb|EEE37482.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 416

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 14/100 (14%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------------ELTGREVECLTWI 197
           R+++ + L     LA        S +    K                +LT RE + L  +
Sbjct: 137 RLLMHEELHLPCFLADKMHAAPGSPNTPVEKQPATRTRSPEKLLLYSQLTRREKQVLRLV 196

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           S+GK++  IA  LGI+ +TV  ++ ++  K     R+ A 
Sbjct: 197 SQGKSNKTIAAKLGITEHTVKLHMHNVSGKIGVSNRTAAA 236


>gi|218263259|ref|ZP_03477435.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222833|gb|EEC95483.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii
           DSM 18315]
          Length = 192

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 44/86 (51%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           EI +    Q    ++  +    + EL+ RE + L  I +G T+ EIA  L IS NTV ++
Sbjct: 100 EIIIEQMEQLFTGENNSISSENNKELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSH 159

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
             +I  K   KT SG   YA+ N I+
Sbjct: 160 RKNITTKLGIKTVSGLTFYAIMNGII 185


>gi|54022748|ref|YP_116990.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014256|dbj|BAD55626.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 219

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  LT RE E L  ++EG +S  IA  L IS  TV+ + A+I++K   + R     YA+
Sbjct: 153 PDNILTAREEEILKLVAEGYSSRGIADTLVISVKTVDRHRANILQKLGLRDRLALTRYAI 212

Query: 242 RNNIV 246
           R  ++
Sbjct: 213 RVGLI 217


>gi|113476331|ref|YP_722392.1| LuxR family transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110167379|gb|ABG51919.1| transcriptional regulator, LuxR family [Trichodesmium erythraeum
           IMS101]
          Length = 87

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 41/62 (66%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE++ +  +++G T+++IA  L IS+ TV+N+I++I+ KT+T  R   + +A++
Sbjct: 9   HTSLSERELQVIELVADGLTNEKIASRLEISKRTVDNHISNILSKTSTHNRVELVRWALQ 68

Query: 243 NN 244
             
Sbjct: 69  WG 70


>gi|167840151|ref|ZP_02466835.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 214

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 10/154 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A+SE  + +  ++              + I       + Y         I   +  +   
Sbjct: 62  AMSEILRAHPDVRFVVFTALGSEARAADAI---RLGASGYLLKWCSPDGIVQAVRRVMAG 118

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              I      +   +A+          V      ELT RE + L  I++G  + EIA +L
Sbjct: 119 RVHIDPS--LDGARIASAAGGRTPPSPVD-----ELTRREKQVLKLIADGMRNREIASLL 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IS  TV+ +   +M+K   +  +  I +A R  
Sbjct: 172 NISPKTVDCHRQRLMQKLGARNVANVIHWAYRYG 205


>gi|74318482|ref|YP_316222.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057977|gb|AAZ98417.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 221

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L R+I +D    +   +  L E  G    +        E  +  ++ +  P  L+  + +
Sbjct: 3   LTRIILVDDHTLFRKGLAELLEQSGEIE-VTAFTGNPDEVAM--LLKAHRPDVLILDLNM 59

Query: 93  SEKDKYYNVLQ-RPTELFCPVF-----HTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              D    + Q R      P+       T  +         N Y   + +   +   ++ 
Sbjct: 60  PGTDGITLMQQLRNAGFALPILILTLSETEDDLARALRAGANGYLLKSMEPDEVVDAILR 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDE 205
                 ++          + A    ++       G   + LT RE E L+ +S G+++  
Sbjct: 120 AQRGETVVAP-------AMTAKLVKLYDQKGQDAGSLLDALTPREREILSHLSRGESNKA 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L IS +TV  ++  I+ K    +R  A  +AV + +
Sbjct: 173 IARTLDISHDTVKLHVRHILAKLNLSSRVEAAVFAVEHKV 212


>gi|21220978|ref|NP_626757.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|6752360|emb|CAB69738.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 227

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           D L   G  A       +S             L+ RE + LT ++ G  + EIA  LG+S
Sbjct: 121 DALLSPGPTARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLS 180

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             T   +++ IM K   + R+  +  A  + +V
Sbjct: 181 PLTAKTHVSRIMGKLEARDRAQLVIVAYESGLV 213


>gi|294815261|ref|ZP_06773904.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC
            27064]
 gi|294327860|gb|EFG09503.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC
            27064]
          Length = 1034

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%)

Query: 158  RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            RL      +        +     G    LT RE + L  +S G+++ +IA  L IS  T 
Sbjct: 940  RLALPASASGPDGPHGPAAAPEPGPGLGLTPREEDVLRLVSAGRSNRQIAQTLSISPKTA 999

Query: 218  NNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + ++++I+ K     R  A A A R  +
Sbjct: 1000 SVHVSNILAKLGVSGRGEAAALAHRLRL 1027


>gi|261251165|ref|ZP_05943739.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP
           102891]
 gi|260938038|gb|EEX94026.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP
           102891]
          Length = 205

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+D L      +   A      +       ELT RE++ L  +++G  + +IA  L IS
Sbjct: 111 LLKDSLRGNKAYSQEVATYLAERENTSSVFDELTDREMQILKEVAKGLRNKQIADTLFIS 170

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 171 ESTVKVHMKSLLKKLQVPSRTAATV 195


>gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 242

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 29/188 (15%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITPP------AGMDNRYCS 132
           P  ++  + +   + Y  +L++  E       PV     + +T        AG+D+ Y S
Sbjct: 59  PDLIISDIMMPRSNGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDD-YIS 116

Query: 133 LTFDVARIRIGLMLLFPKGRIILRD--------------RLWEIGLLAAYQANMFKSYDV 178
             FD   +   +  +  +   +L++              ++ EI  +   Q  + K   +
Sbjct: 117 KPFDPDELSARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPLNKENSI 176

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                   T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT+T +R+  + 
Sbjct: 177 DIP---SFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTSTSSRTELVR 233

Query: 239 YAVRNNIV 246
           YA+ N++V
Sbjct: 234 YALENHLV 241


>gi|294625489|ref|ZP_06704118.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665263|ref|ZP_06730559.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600210|gb|EFF44318.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604978|gb|EFF48333.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 210

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 12/216 (5%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ---EQKLDSIVSSDWPFDLVRCM 90
            R+   D  +     + AL +  G    ++   D  Q   +      V        +  +
Sbjct: 4   RRIALADDQILVRAGLRALLQQQGVE--VVCEADDGQGLLDALAIHTVDVVLSDIRMPGL 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
              +  ++       T +         + +   +    +   L           +     
Sbjct: 62  DGIQALEHLRARGDRTPVLLLTTFDDSDLLLRASEAGAQGFLLKDAAPEDLREAIERVAA 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  +L+        ++         +          + REV  L  ++ G ++ EIA  L
Sbjct: 122 GDTLLQP-------VSTDPVRARYQFRDQQAPRETFSEREVAILRLLAGGYSNKEIARTL 174

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 175 FLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210


>gi|254693131|ref|ZP_05154959.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 3
           str. Tulya]
 gi|261213372|ref|ZP_05927653.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260914979|gb|EEX81840.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 213

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +    +   L+ RE + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G 
Sbjct: 140 ESGEKRSEGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGL 199

Query: 237 IAYAVRNNI 245
             YA+ N +
Sbjct: 200 TRYAIENRL 208


>gi|254496211|ref|ZP_05109106.1| lipolytic enzyme / transcription regulator protein [Legionella
           drancourtii LLAP12]
 gi|254354603|gb|EET13243.1| lipolytic enzyme / transcription regulator protein [Legionella
           drancourtii LLAP12]
          Length = 505

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 12/175 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F + R +           +          F  + +       ++  +     D  ++   
Sbjct: 330 FFIQRDIKYDAMQIPIIQILEARYSLSTTFAMIRQCDECDLIVEAYHSEKIADPQKLYYQ 389

Query: 144 LMLLFPK-GRIILRDRLWEIGL-------LAAYQANMFKSY----DVHWGKDFELTGREV 191
           +   F +   + L   L EI         LA +    F++             +LT RE+
Sbjct: 390 IRDTFEQFICLFLDAMLPEIKTALPNQKWLALFNDQEFRNNVIMRKAVKKPLTQLTPREL 449

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +CL+ IS+G T  +I+  L +S  TVN +  SI  K      + A++ A R  ++
Sbjct: 450 QCLSMISKGMTIKKISEYLHLSSETVNTHAKSIRTKMNCVNITEAVSKAFRLGLL 504


>gi|145294782|ref|YP_001137603.1| hypothetical protein cgR_0730 [Corynebacterium glutamicum R]
 gi|140844702|dbj|BAF53701.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 230

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 48/156 (30%), Gaps = 29/156 (18%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
            L   V     + I    G    Y + +     +   +  +                 LA
Sbjct: 76  FLALSVSDAAEDVIAIIRGGARGYVTKSISGEELVEAINRVKSGDAFFSP-------RLA 128

Query: 167 AYQANMFKSYDVHWGKDF----------------------ELTGREVECLTWISEGKTSD 204
            +  + F + D   G                          LT RE+E L  ++ G T  
Sbjct: 129 GFVLDAFAAPDSAAGAGIVDAPEKDAAVESGKILDDPVVDALTRRELEVLRLLARGYTYK 188

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EI   L IS  TV  + ++I+RKT    R     +A
Sbjct: 189 EIGKELFISVKTVETHASNILRKTQQSNRHALTRWA 224


>gi|89902955|ref|YP_525426.1| ATP-dependent transcription regulator LuxR [Rhodoferax
           ferrireducens T118]
 gi|89347692|gb|ABD71895.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Rhodoferax ferrireducens T118]
          Length = 894

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G+++ E+A  + IS  TV  ++ SI  K   + R  A+  A    +
Sbjct: 832 LTERERDVLMLVASGQSNKEVARSMNISAETVKTHLKSIFGKLGVQQREQAVVLARAVGL 891

Query: 246 V 246
           +
Sbjct: 892 I 892


>gi|71906473|ref|YP_284060.1| LuxR response regulator receiver [Dechloromonas aromatica RCB]
 gi|71846094|gb|AAZ45590.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas
           aromatica RCB]
          Length = 221

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 50/146 (34%), Gaps = 4/146 (2%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
              +     L   V     + +       + Y     +   +   +        ++ +  
Sbjct: 73  SEEMPEVRVLMLTVSEDAQDLMDALRAGASGYLLKNIETDMLVDAIRRAAQGESVVSQQM 132

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             ++              +    +    + RE + L  +++G+++ EIA  L ++ +TV 
Sbjct: 133 TAKL----IQGVRNPPKAETATIERDRFSPRERDILASLAQGESNKEIARKLDLAESTVK 188

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNN 244
            ++ +I +K    +R     YAV N 
Sbjct: 189 IHVQNIFKKLNMSSRVQVALYAVENG 214


>gi|320333728|ref|YP_004170439.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755017|gb|ADV66774.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 210

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A      F+S D+       LT +EV  L  I+ G  + EIA  LGI+  TV  +++ ++
Sbjct: 131 ARRLVRDFRSPDMRE----HLTPKEVLTLQLIARGHANREIAQELGITEATVKTHVSRLL 186

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K    +R+ A  YA++  +
Sbjct: 187 GKLGLTSRTQAALYALKAGL 206


>gi|294632463|ref|ZP_06711023.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292835796|gb|EFF94145.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 228

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            I         L A     +             LT RE + L  +S G T+ +IA  L +
Sbjct: 137 AIHSAAAGRTALSAPVAHRVMARM---RSPRPTLTDRERDILGQLSRGLTNRDIAKALFL 193

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 194 SEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 227


>gi|289772962|ref|ZP_06532340.1| multidomain-containing protein family [Streptomyces lividans TK24]
 gi|289703161|gb|EFD70590.1| multidomain-containing protein family [Streptomyces lividans TK24]
          Length = 780

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGRE 190
           +L   +   R   +  F     + +  L ++    A+  +       H G     LT RE
Sbjct: 665 TLMLGLGAERFTQVYTFGTRLPVPQ--LIDVACGNAHADDAAPPRHPHDGSPLGPLTPRE 722

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            E    I EG T+ +IA  L IS+ T + ++  I+ K    +R+   A
Sbjct: 723 REVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQIAA 770


>gi|73537441|ref|YP_297808.1| LuxR transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120778|gb|AAZ62964.1| regulatory protein, LuxR:Tetratricopeptide TPR_4 [Ralstonia
           eutropha JMP134]
          Length = 947

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E + L  ++EG ++  +A  L +S  TV  ++ +I  K     R+ A+A A +  
Sbjct: 886 PLTPKEQKVLQLLAEGFSNVAMAQRLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLG 945

Query: 245 IV 246
           ++
Sbjct: 946 LL 947


>gi|239943663|ref|ZP_04695600.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 183

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +      G    LT RE++ L  +S G+++ EI   L +S +TV  +   + +K     R
Sbjct: 110 RLRSAEMGAAPTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKLGASDR 169

Query: 234 SGAIAYAVRNNIV 246
           + A+A   R  +V
Sbjct: 170 AHAVALGFRWGLV 182


>gi|149184470|ref|ZP_01862788.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148831790|gb|EDL50223.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 140

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 39/116 (33%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +L     R   G      +   +    L     + +               +  L+ RE
Sbjct: 23  FALYGPRNRDAFGSAGFSSEPSELAEGVLTATHSILSSAHLQICRIMDRANPEISLSQRE 82

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  +  GKTS EI  IL IS  TV  Y   +  K     R  A   A++  +V
Sbjct: 83  RQVLELMGSGKTSVEIGTILAISPETVKTYTKRLYEKLEANDRVTATVRALKLGLV 138


>gi|77457134|ref|YP_346639.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens
           Pf0-1]
 gi|77381137|gb|ABA72650.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 850

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  D        L+ RE++ L  I+ G ++ +IA  L IS +TV  ++  I  K   + R
Sbjct: 778 EQVDEQSTTINPLSQRELKVLQLIAFGDSNLQIAEKLFISLHTVKTHVRRIHSKLGVERR 837

Query: 234 SGAIAYAVRNNI 245
           + A+A A   N+
Sbjct: 838 TQAVAKAKLLNL 849


>gi|21219837|ref|NP_625616.1| multidomain-containing protein family [Streptomyces coelicolor
           A3(2)]
 gi|8977921|emb|CAB95788.1| putative multi-domain regulatory protein [Streptomyces coelicolor
           A3(2)]
          Length = 780

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGRE 190
           +L   +   R   +  F     + +  L ++    A+  +       H G     LT RE
Sbjct: 665 TLMLGLGAERFTQVYTFGTRLPVPQ--LIDVACGNAHADDAAPPRHPHDGSPLGPLTPRE 722

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            E    I EG T+ +IA  L IS+ T + ++  I+ K    +R+   A
Sbjct: 723 REVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQIAA 770


>gi|331695485|ref|YP_004331724.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950174|gb|AEA23871.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 244

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWI 197
           R  +    +    R +LR          +   ++ +  D     +   LT RE + L  +
Sbjct: 136 RKGVETSEIVRSVRALLRGESVFDSRTTSVVVDVLRDEDGGARPRGQMLTERENQVLKLL 195

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIAV L IS  TV  ++ ++  K   + R+  +  A R  +V
Sbjct: 196 AVGMSNREIAVRLLISEATVKFHVRNLREKLDVRRRTEIVYTATRQGMV 244


>gi|296131165|ref|YP_003638415.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022980|gb|ADG76216.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 254

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          D     L   +     G  LL P     L +       +     +
Sbjct: 99  VFEALRAGARGLVLKDAPTSELVAAIHAAAAGDSLLSPSVTRRLIEEFARRPTVRMEATD 158

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        ELT RE +    + +G ++ E A  L +  +TV +++ S+ RK   +
Sbjct: 159 ----------GPAELTARERDVFRLLVQGLSTAEAAERLTLGDSTVKSHVQSLYRKLGVR 208

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+ YA  + +V
Sbjct: 209 DRVQAVIYAYEHGLV 223


>gi|32441931|gb|AAO38761.1| SwrR [Serratia liquefaciens]
          Length = 248

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 36/87 (41%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               +   YQ     +      +    + RE E + W S GK+  EIA+ILGI   TV  
Sbjct: 153 MHGKMTTLYQEMSTPADFEKMNQREFFSKRENEIIYWASLGKSYQEIALILGIKLTTVKY 212

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I + ++K        AI   V   ++
Sbjct: 213 HIGNAVKKLGVTNAKHAIRLGVELQLI 239


>gi|304405956|ref|ZP_07387614.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345199|gb|EFM11035.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DF 184
              +         +  G+ ++   G +I  +      +      +M KS      K  +F
Sbjct: 100 AEGFLLKAIHPKNLIAGIRVVHTGGTLISPE------MADKMIKSMLKSGPELLEKNNEF 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REVE L  ++ G  + +IA  L +S  TV NYI++I  K   K R  A   A    
Sbjct: 154 GLSAREVEVLHKLALGLRNQDIAKALYLSEGTVKNYISNIYSKMNVKGRREAAYKARETG 213

Query: 245 IV 246
           I+
Sbjct: 214 IL 215


>gi|255325217|ref|ZP_05366323.1| two-component system response regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311739691|ref|ZP_07713526.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297782|gb|EET77093.1| two-component system response regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311305507|gb|EFQ81575.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 247

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            +   + +     +   + +  +     G  +L  R+    L            D H   
Sbjct: 107 ISAGASGFLLKDVEPEEL-LAAIRTVHSGEAVLSPRITAQVLQQLRSGQSASQPDSHATP 165

Query: 183 DF---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                      +LT RE++ L  ++ G ++ EI+    +S  TV  ++  I+ KT ++ R
Sbjct: 166 VAAAATAPPAEDLTPRELDVLKLMALGYSNTEISECEFVSMATVKTHVRHILTKTGSRDR 225

Query: 234 SGAIAYAVRNNIV 246
             A+ YA+ + +V
Sbjct: 226 VHAVLYALTHGVV 238


>gi|126729492|ref|ZP_01745306.1| Response regulator [Sagittula stellata E-37]
 gi|126710482|gb|EBA09534.1| Response regulator [Sagittula stellata E-37]
          Length = 218

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 18/159 (11%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPE----NITPPAGMDNRYCSLTFDVARIRIGLMLL 147
               + +    +   E  C V   +            G+D  +   +     +R   M+L
Sbjct: 68  ARGMEVFGEARRWSPETRCAVITGMTSPQVLADWIAVGIDGLFLKSSPPEEMLRGLTMIL 127

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                            +A    ++ ++ D    +   LT RE + L  I+EG ++  IA
Sbjct: 128 AGDT------------YVARAVLDILEAADNDGRE--ALTMRERQVLYLIAEGCSNAAIA 173

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  TV+N+   +M K    + +  +AYA+++ ++
Sbjct: 174 ERLSISVKTVDNHRTRLMAKLQVHSVAQLVAYALKSGLL 212


>gi|119964172|ref|YP_949850.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119951031|gb|ABM09942.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 218

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVE 192
            V     G ML       I +  L        LA   A               L+GREV+
Sbjct: 104 AVEAGASGYMLKDAPPEQIRQAVLSAAAGQTALAPEVAARLMGRI--RNPSPALSGREVQ 161

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G ++  +A  L IS  TV  ++  I  K     R+ AIA A +  I+
Sbjct: 162 LLELLATGMSNRAMAKQLFISEATVKTHLVHIYSKLGVDNRTAAIAVATQRRII 215


>gi|261867392|ref|YP_003255314.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412724|gb|ACX82095.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 209

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 12/137 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--------RLWEIG----LLAA 167
                G+D R   LT   A+  I  ++       +L+D        +L  I     +L+ 
Sbjct: 71  ALRAEGVDARIVILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQLKRIARGEVILSD 130

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              N+           + LT RE+  L  I+ G ++ +IA  L IS  TV  +I +++RK
Sbjct: 131 SIKNLLLERQSAQEPIYSLTDREMGVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRK 190

Query: 228 TATKTRSGAIAYAVRNN 244
               +R  A      + 
Sbjct: 191 LNVHSRVAATVLYFEHK 207


>gi|226361722|ref|YP_002779500.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240207|dbj|BAH50555.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 411

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             +      +  +L  RE+E L  ++ GK +  IA  LGIS +TV  ++A +++K    +
Sbjct: 331 LPAARPDEQQFGDLNPRELEVLGHLATGKRNKAIADSLGISESTVKFHVAGVLKKLGVAS 390

Query: 233 RSGAIAYAVRNNI 245
           R  A A A+   I
Sbjct: 391 RGEAGAIALEAGI 403


>gi|119898377|ref|YP_933590.1| putative transcriptional activator protein [Azoarcus sp. BH72]
 gi|119670790|emb|CAL94703.1| putative transcriptional activator protein [Azoarcus sp. BH72]
          Length = 251

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRN 215
           L E+ +   + A +      H         L+GRE++ L  + +G T+ +I  +L IS  
Sbjct: 153 LAELLMPHLHLALLRMREGEHAAAGASPALLSGRELQVLGCMRDGLTNQQIGEVLEISAL 212

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV N++  I+RK     R+ A+A  V   ++
Sbjct: 213 TVKNHVQRILRKLRAANRAQAVANGVAAGLI 243


>gi|86159176|ref|YP_465961.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775687|gb|ABC82524.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 215

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y    F  A +   +  +       +  R  ++ LL  ++ +     D      
Sbjct: 95  RAGASGYILKPFHAADLTKAVEDVLSGEAAPISPRAAKV-LLQEFRGD---PPDQRAKDG 150

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L  +  G T  ++A  LGI+  TV  Y+  I  K    T++ A   AV  
Sbjct: 151 PALSKRELEVLQLLVHGHTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVAR 210

Query: 244 NIV 246
            +V
Sbjct: 211 GLV 213


>gi|114320822|ref|YP_742505.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227216|gb|ABI57015.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 221

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANMFK 174
            + +       N Y     + A +  GL  +      +   RL +  + ++A  ++    
Sbjct: 85  RDLLQALQAGANGYLVKDAEPAELIQGLEKVLAGQTAV-ASRLTDTLVQMMAGGRSQREG 143

Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +        F  LT RE E L  ++  +++  IA  LG+S  TV  +I SI+RK   K+R
Sbjct: 144 AEASRPPDPFAALTPREREILMHVARAESNKVIARELGVSDGTVKLHIKSILRKLGVKSR 203

Query: 234 SGAIAYAVRNNI 245
             A   AV   +
Sbjct: 204 VEAAVKAVDLGL 215


>gi|330820816|ref|YP_004349678.1| putative metal dependent phosphohydrolase [Burkholderia gladioli
           BSR3]
 gi|327372811|gb|AEA64166.1| putative metal dependent phosphohydrolase [Burkholderia gladioli
           BSR3]
          Length = 481

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  IS G ++ E A +L +S +TV  ++ SI RK    TR+ A   A+   +
Sbjct: 421 LSPREIEVLRQISGGLSNKEAARVLALSPSTVRTHVESIFRKLDCSTRAAATLKALTTGL 480

Query: 246 V 246
           +
Sbjct: 481 L 481


>gi|288916739|ref|ZP_06411113.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288351813|gb|EFC86016.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 225

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 33/222 (14%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +   ++  +R+++  + V  +   L   +  +E + D I+           + + E D  
Sbjct: 14  VRGGLAMVLRIHSDIDVVAEAGNGLEAMEAAREHRPDVILM---------DIRMPEMDGL 64

Query: 99  YNVLQRPTE-----------LFCP---VFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
               +   E            F P   V+  L    +     D     L   V  +  G 
Sbjct: 65  EATSRILAEADWGVRVLILTTFDPDEYVYEALRAGASAFVLKDIPADQLAVAVRTVADGG 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L+ P     L  R  E   +++  A   +           LT RE + +  ++ G ++ 
Sbjct: 125 ALIAPSITRRLIGRFTERRPVSSTVARRVER----------LTDRERDVVVAVARGSSNS 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L I   TV ++++SI+ K   + R+  + +A  + +V
Sbjct: 175 EIAKELFIGPATVKSHVSSILTKLGLRDRAQVVVFAYESGLV 216


>gi|284042697|ref|YP_003393037.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946918|gb|ADB49662.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +           L         G   L+P              L+  Y    
Sbjct: 97  FEALKAGASGYVLKTAADRDLVEAARAAMRGESFLYPAAI---------TALVRDYLERA 147

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               DV    +  LT RE E L  I+E  T+D+IA+ L I+R TV  + A+I+ K   + 
Sbjct: 148 SAGEDV---PEDPLTPREREVLKLIAEAHTNDQIALELQIARRTVERHRANILAKLHMRD 204

Query: 233 RSGAIAYAVRNNIV 246
           R     YA+R  +V
Sbjct: 205 RVELTRYAIRRGLV 218


>gi|227894641|ref|ZP_04012446.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227863536|gb|EEJ70957.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 223

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 71/175 (40%), Gaps = 6/175 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           +  + P  ++  + +   D      ++ ++  ++   +  T  ++    + +    + Y 
Sbjct: 43  IKKNKPDIVLMDIRMPVMDGTVCTKHIKEKYPDIKVIILTTFDDDDFIFSALKYGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +   G +I  +   ++  L +  A    +  V+  +   L+  E 
Sbjct: 103 LKGASPQELYKAIDTVNAGGAMINPNIAGKVFKLFSKMAQSNYAISVNTNEVKNLSKSEW 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +  +  G+T+ EIA  L +S  TV NYI+ I+     + R+    +AV+  ++
Sbjct: 163 QVIQQVGLGRTNKEIAQKLFLSEGTVRNYISKILSCLQLRDRTQLAIWAVQKGVI 217


>gi|198276810|ref|ZP_03209341.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135]
 gi|198270335|gb|EDY94605.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135]
          Length = 215

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             +V   K +ELT RE+E +  ++ G TS EIA  L I RNTV  Y   I  K   K+  
Sbjct: 143 EENVKKRKPYELTDRELEVIQLLANGYTSKEIANELNIDRNTVETYKDRIKSKLDCKSAI 202

Query: 235 GAIAYAVRNNIV 246
             + +A +N ++
Sbjct: 203 EIVVFAYKNKLI 214


>gi|256789068|ref|ZP_05527499.1| multidomain-containing protein family [Streptomyces lividans TK24]
          Length = 772

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGRE 190
           +L   +   R   +  F     + +  L ++    A+  +       H G     LT RE
Sbjct: 657 TLMLGLGAERFTQVYTFGTRLPVPQ--LIDVACGNAHADDAAPPRHPHDGSPLGPLTPRE 714

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            E    I EG T+ +IA  L IS+ T + ++  I+ K    +R+   A
Sbjct: 715 REVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQIAA 762


>gi|223934338|ref|ZP_03626259.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896801|gb|EEF63241.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 236

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V                    L   +     G     P     LRD+  E          
Sbjct: 102 VQQLTEAGAAGYLVKQTAANDLLKAIREAYKGNAFFSPSIAKRLRDQCREA--------- 152

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F S      ++  LT RE E L  I+EG+ + +IA  L IS  TV  +   +M K    
Sbjct: 153 -FVSGQPVRKRNDYLTTREAEVLQLIAEGQANKQIAAELCISIKTVEKHRQQVMNKLNIH 211

Query: 232 TRSGAIAYAVRNNIV 246
             +G   +A+   I+
Sbjct: 212 DVAGLTRHAISKGII 226


>gi|148272754|ref|YP_001222315.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830684|emb|CAN01624.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 228

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 4/162 (2%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D ++  A   +       + P  L    F              + +     D   +   
Sbjct: 64  MDGIQATAEVLRAADARGERPPRVLVLTTFDLDESAARAIRAGASGFVLKDADPEFLLAA 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I      ++        +      V       LT RE E     + G ++
Sbjct: 124 IRTVHAGNSVIAASATRQL----LEHFDPGSRPRVAPPAFMSLTSREREIFVLAARGLSN 179

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA    +S  TV  +++ I+ K + + R   + +A  + +
Sbjct: 180 AEIAQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAFEHRL 221


>gi|294013470|ref|YP_003546930.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676800|dbj|BAI98318.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 250

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           Y        R+   L L+    R++   L D L     L      + +  D        L
Sbjct: 105 YIVKEISCDRLVATLRLVAMGERVLPPQLADELQSRPSLT-DALEVERPVDAAC-----L 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + RE+E L W+  G  +  I+  + IS  TV  ++ +++RK   K R+ A  +A  + 
Sbjct: 159 SDRELEILRWLIMGCPNKVISKRMDISEATVKVHVKAVLRKLRVKNRTQAAIWAANHG 216


>gi|256787861|ref|ZP_05526292.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289771746|ref|ZP_06531124.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289701945|gb|EFD69374.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 231

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           D L   G  A       +S             L+ RE + LT ++ G  + EIA  LG+S
Sbjct: 125 DALLSPGPTARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLS 184

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             T   +++ IM K   + R+  +  A  + +V
Sbjct: 185 PLTAKTHVSRIMGKLEARDRAQLVIVAYESGLV 217


>gi|290957842|ref|YP_003489024.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647368|emb|CBG70473.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 237

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 3/113 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                +   D+   R  +         +  +   E    ++      K +D    + F L
Sbjct: 117 AAELIAAVRDMREGRATISATVSSSLGVSYEPSHESHDHSSQLQPFVKQFD---RRSFGL 173

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + REVE +  I+ G  + +IA    IS  TV N+I  I  K  + TRS AIA+
Sbjct: 174 SSREVEVMDLIASGMNNRQIAATCFISEKTVKNHINRIFAKLHSATRSEAIAH 226


>gi|291295044|ref|YP_003506442.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470003|gb|ADD27422.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 194

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 73/212 (34%), Gaps = 21/212 (9%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++  D    + M + A  E  G +    V  +    Q+   +     P  ++  + + +
Sbjct: 2   RLLIADDHPLFRMGLRAALEREGFA----VVAEAGDGQEAVKLGLELLPDGVLLDVRMPQ 57

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
            D          + +  +   L     P       Y                        
Sbjct: 58  MDGITATRMLREQRYNGLIALLTTFNEPVLVQQAAYAGAD---------AYWSKELPPEA 108

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L +RL  +GL         ++ ++       LT RE E L W+++G ++ EIA  + IS 
Sbjct: 109 LAERLRRLGL---GLEPRLRAPELPR-----LTAREQEVLQWMAQGLSTKEIARQMHISP 160

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV +++  +  K   + R  A+  A    ++
Sbjct: 161 ETVKDHLLRLYEKLEARNRVEALERARSLGLL 192


>gi|251798920|ref|YP_003013651.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546546|gb|ACT03565.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 225

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 75/205 (36%), Gaps = 11/205 (5%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
            +S+ + M    E VG +H      +   E + D IV  D    ++  +  S       +
Sbjct: 17  GISFFLAMQPDFELVGEAHNGKEAVEKAGELQPD-IVLMDLNMPIMDGIEAS-----ALI 70

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF-DVARIRIGLMLLFPKGRII-LRDRL 159
            ++   +   V  +  +       +          DV   ++   +       I L   +
Sbjct: 71  KEQHPHIKVLVLTSFADQSHIVPALQTGAIGYMLKDVEPDQLAEAIRSAYKGNIQLHPDI 130

Query: 160 WEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               L         +    H  +D     LT RE+E L  +++G ++ +IA  L ++  T
Sbjct: 131 SRALLSRPEPEPRPEPVIQHSNRDKSLEALTPRELEVLELLTKGLSNKDIAQTLIVAEKT 190

Query: 217 VNNYIASIMRKTATKTRSGAIAYAV 241
           V  +++SI+ K     R+ A  +A 
Sbjct: 191 VKTHVSSILSKLDLSDRTQAALFAA 215


>gi|260596309|ref|YP_003208880.1| putative HTH-type transcriptional regulator yhjB [Cronobacter
           turicensis z3032]
 gi|260215486|emb|CBA27616.1| Putative HTH-type transcriptional regulator yhjB [Cronobacter
           turicensis z3032]
          Length = 218

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +    P   I+   R   +G+L  +        D   G    L+ R+ E L  +
Sbjct: 113 HHVAAFVRRDSPPEAIVQTLRAAAMGMLC-FPQESISLLDSGPGTLARLSERQREILKLL 171

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + G+++ +I+  L IS  TV  ++ SI R+     R+ A 
Sbjct: 172 AAGESNKQISRHLNISAGTVKAHLESIFRRLNVTNRTQAA 211


>gi|256839247|ref|ZP_05544757.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262382307|ref|ZP_06075444.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|301308485|ref|ZP_07214439.1| putative transcriptional regulator, LuxR family [Bacteroides sp.
           20_3]
 gi|256740166|gb|EEU53490.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262295185|gb|EEY83116.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|300833955|gb|EFK64571.1| putative transcriptional regulator, LuxR family [Bacteroides sp.
           20_3]
          Length = 193

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 39/72 (54%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S +     + +L+ REV+ L  I +G T+ EIA  L IS NTV  +  +I  K   KT S
Sbjct: 115 SGNTTTENNKDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVS 174

Query: 235 GAIAYAVRNNIV 246
           G   YA+ N I+
Sbjct: 175 GLTFYAIMNGII 186


>gi|269926246|ref|YP_003322869.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789906|gb|ACZ42047.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 214

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 6/141 (4%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI---GLMLLFPKGRIILRDRLWEIGLL 165
              V       +     +D     +   ++R++     +  +   G I     + E+ LL
Sbjct: 75  HVLVLTGSMNKLDLARAIDAGADGVMLKLSRVQDIIQAIRCISAGGSIHSPQEIAELLLL 134

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A               K  +LT RE E L  I+EG +  EIA    I+ +T + +  +I+
Sbjct: 135 A---GRARIEDANARDKIGQLTDREREILQAIAEGLSDKEIAARFNITVDTAHKHANNIL 191

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK  T +R  A+ +A+R+  +
Sbjct: 192 RKLDTNSRLQAVLFALRHGAI 212


>gi|150010404|ref|YP_001305147.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|149938828|gb|ABR45525.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
          Length = 193

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 39/72 (54%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S +     + +L+ REV+ L  I +G T+ EIA  L IS NTV  +  +I  K   KT S
Sbjct: 115 SGNTTTENNKDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVS 174

Query: 235 GAIAYAVRNNIV 246
           G   YA+ N I+
Sbjct: 175 GLTFYAIMNGII 186


>gi|21902157|gb|AAM78432.1|AF425991_3 putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 217

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           D L   G  A       +S             L+ RE + LT ++ G  + EIA  LG+S
Sbjct: 121 DALLSPGPTARLIERFLRSPSALHPPGSGPDCLSERERQVLTLVARGLNNTEIAEALGLS 180

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             T   +++ IM K   + R+  +  A  + +V
Sbjct: 181 PLTAKTHVSRIMGKLEARDRAQLVIVAYESGLV 213


>gi|298251437|ref|ZP_06975240.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
 gi|297546029|gb|EFH79897.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
          Length = 1003

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%)

Query: 174  KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +S        F LT RE E L  ++ G     IA  L +SR TVN ++ SI  K    TR
Sbjct: 931  QSITPSSANAFHLTARECEVLRLLALGHPDARIAQELVLSRRTVNTHLRSIYAKLGVSTR 990

Query: 234  SGAIAYAVRNNI 245
            + A   A    +
Sbjct: 991  TAAARVAFEQQL 1002


>gi|239831204|ref|ZP_04679533.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239823471|gb|EEQ95039.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 213

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    K   L+ RE + L  ++EG ++ EIA+ LGIS  TV  +  +I +K    + +G 
Sbjct: 140 DSGERKSEGLSVRENDVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGL 199

Query: 237 IAYAVRNNI 245
             YA+ N +
Sbjct: 200 TRYAIENRL 208


>gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 242

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 77/188 (40%), Gaps = 29/188 (15%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITPP------AGMDNRYCS 132
           P  ++  + +   + Y  +L++  E       PV     + +T        AG+D+ Y +
Sbjct: 59  PDLIISDIMMPRSNGYA-LLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDD-YIA 116

Query: 133 LTFDVARIRIGLMLLFPKGRIILRD--------------RLWEIGLLAAYQANMFKSYDV 178
             FD   +   +  +  +   +L++              ++ EI  +   Q  + +   +
Sbjct: 117 KPFDPDELSARVKNVINRQERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPLNQENSI 176

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                   T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT+T +R+  + 
Sbjct: 177 DIP---NFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTSTSSRTELVR 233

Query: 239 YAVRNNIV 246
           YA+ N++V
Sbjct: 234 YALENHLV 241


>gi|172062446|ref|YP_001810097.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994963|gb|ACB65881.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 514

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 122 PPAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
            P  +  + C L    D++  +   M L       ++D  W    L    AN+ +     
Sbjct: 364 EPVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRENAPD 423

Query: 180 WGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI 
Sbjct: 424 AGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIV 483

Query: 239 YAVRNNIV 246
           +A    IV
Sbjct: 484 WARERGIV 491


>gi|120609353|ref|YP_969031.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120587817|gb|ABM31257.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 256

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    L+ RE + L  I+ G ++ EIA  L I+  TV  ++  I+RK    +R  A  
Sbjct: 189 AAGSASPLSAREEDVLREIARGASNKEIARALDIAETTVKIHVQHILRKLGLSSRVQAAV 248

Query: 239 YA 240
           YA
Sbjct: 249 YA 250


>gi|229130601|ref|ZP_04259557.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|6759482|emb|CAB69808.1| putative two-component response regulator [Bacillus cereus ATCC
           14579]
 gi|228652940|gb|EEL08822.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 159

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 93  WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 152

Query: 240 AVRNNIV 246
           A     +
Sbjct: 153 AEEKGWI 159


>gi|86134557|ref|ZP_01053139.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
 gi|85821420|gb|EAQ42567.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
          Length = 217

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 2/124 (1%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                N Y     D   +   ++ +   G  +       +  L   +     +  +    
Sbjct: 96  IKAGANGYLLKEIDAENLYKSIIEVTEGGAPMSPS--IALKTLNLLRNPTIATEKIEESD 153

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE E L  +S+G   + I+  L IS +TV  +I +I +K    ++  A+  A +
Sbjct: 154 TIKLTKRETEILIQLSKGLNYNSISDNLIISPSTVRKHIENIYKKLQVHSKMEAVMKAQK 213

Query: 243 NNIV 246
            N++
Sbjct: 214 RNLI 217


>gi|332978107|gb|EGK14844.1| nitrate/nitrite response regulator protein NarL [Psychrobacter sp.
           1501(2011)]
          Length = 219

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 11/158 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
                LS  D    +  +  +    +F            +    N Y        ++ + 
Sbjct: 65  QNMPGLSGLDTVKQIRDQGNQAKILMFTVSDSGDDIHNALKLGVNGYLLKDMQPEQVALD 124

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +       R  LR  L     LAA  A   ++ ++       LT RE++ +  I++G+++
Sbjct: 125 I-------RKALRGELVVSSRLAAVLAQALRTPNLD-DIVSNLTSRELQVVKMIAKGQSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             I   LGIS +TV  ++  I+ KT  +TR     +AV
Sbjct: 177 KMIGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAV 214


>gi|303239313|ref|ZP_07325841.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593099|gb|EFL62819.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 210

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 38/81 (46%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +AA   N          +  ELT RE E    ++E  ++ EIA  L I+  TV N+I +I
Sbjct: 130 IAAKLVNRLSESQDSANQLEELTSREHEIAKLVAEALSNKEIAAKLFITEGTVKNHITNI 189

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           + K     R+    Y + NN+
Sbjct: 190 LSKLDLNHRTKIALYVIENNL 210


>gi|312199753|ref|YP_004019814.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231089|gb|ADP83944.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 246

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 3/177 (1%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNR 129
           +L   +  D  F  VR   +   +    ++         +  T   +    AG+    + 
Sbjct: 58  RLARQLRPDVVFMDVRMPGMDGIEATAAIVAARLPTRVLILTTFDLDQYVYAGLRAGASG 117

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +       A +      +     +I       +           +  D        LT R
Sbjct: 118 FLLKDARPAELAAAAHAVAAGEAVIAPSATRRLLETFTPLLPTPEQADARAATLAALTDR 177

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  +++ +T+ EIA  L +S  TV  ++  I+ K   + R   +A+A    ++
Sbjct: 178 EHDVLLLVAQARTNREIADELHVSEATVKVHVGRILAKLGLRDRVQTVAFAYETGLI 234


>gi|145595794|ref|YP_001160091.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305131|gb|ABP55713.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 221

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202
           +    P   ++   R       A   A++ ++          +L+ RE + L  +++G +
Sbjct: 110 VPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMS 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              IA  L +S +T   +I+ +  K     R+ A+  A+R  ++
Sbjct: 170 VAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213


>gi|56418740|ref|YP_146058.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56378582|dbj|BAD74490.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 221

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 7/155 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPT--ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   ++  +    + ++     L    F      +         Y     D  RIR  +
Sbjct: 65  VRMPNMNGVEATKLLCEQTKTKPLILTTFDDDEYILDAIQYGAKGYFLKNTDPERIREAI 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    + +I      +       D         T RE++ +  I++G ++ 
Sbjct: 125 KAVYHGQVVMQEIVMDKIKSNLKEETEAAPKIDKSL-----FTERELDIMALIAKGLSNK 179

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EIA  L +S  TV NYI SI+ KT  + R+    Y
Sbjct: 180 EIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214


>gi|21224676|ref|NP_630455.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3367769|emb|CAA20094.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
          Length = 222

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 3/162 (1%)

Query: 87  VRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   +   +    ++    R   L    F              + +         +  G
Sbjct: 55  VRMPGMDGIEATRRIVAAGGRSRVLVLTTFDLDEYVHAAIRAGASGFLLKDARPDELLAG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I       +    A      +       +   LT RE E L  + +G T+
Sbjct: 115 IRAVASGDAVIAPALTRRLLDEFAQYVPAHRGDAAGDPRLVSLTDREREILVAVGKGWTN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA    +S +TV  ++  ++ K   + R  A+ +A  + +
Sbjct: 175 GEIAARFVLSESTVKTHVGRVLAKIGARDRIQAVIFAYDHGL 216


>gi|21223147|ref|NP_628926.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|29831541|ref|NP_826175.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|182436552|ref|YP_001824271.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|239929430|ref|ZP_04686383.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|239979981|ref|ZP_04702505.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|239990114|ref|ZP_04710778.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|254383110|ref|ZP_04998464.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|254392007|ref|ZP_05007198.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|256785756|ref|ZP_05524187.1| putative two-component system response regulator [Streptomyces
           lividans TK24]
 gi|282860879|ref|ZP_06269945.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|289769648|ref|ZP_06529026.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|290958081|ref|YP_003489263.1| luxR family regulator [Streptomyces scabiei 87.22]
 gi|291437756|ref|ZP_06577146.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291447128|ref|ZP_06586518.1| whiK [Streptomyces roseosporus NRRL 15998]
 gi|291451838|ref|ZP_06591228.1| whiK [Streptomyces albus J1074]
 gi|294630967|ref|ZP_06709527.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|294814529|ref|ZP_06773172.1| Two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
 gi|295838473|ref|ZP_06825406.1| two-component system, regulatory protein [Streptomyces sp. SPB74]
 gi|297192634|ref|ZP_06910032.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297201810|ref|ZP_06919207.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|302519583|ref|ZP_07271925.1| whiK [Streptomyces sp. SPB78]
 gi|302536316|ref|ZP_07288658.1| whiK [Streptomyces sp. C]
 gi|302543269|ref|ZP_07295611.1| two-component system, regulatory protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302553613|ref|ZP_07305955.1| two-component system, regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302558923|ref|ZP_07311265.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
 gi|307331078|ref|ZP_07610207.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|318058051|ref|ZP_07976774.1| luxR family regulator [Streptomyces sp. SA3_actG]
 gi|318080229|ref|ZP_07987561.1| luxR family regulator [Streptomyces sp. SA3_actF]
 gi|326442919|ref|ZP_08217653.1| luxR family regulator [Streptomyces clavuligerus ATCC 27064]
 gi|326777175|ref|ZP_08236440.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|329938172|ref|ZP_08287623.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|333026588|ref|ZP_08454652.1| putative two-component regulator [Streptomyces sp. Tu6071]
 gi|3449280|emb|CAA20424.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3618247|emb|CAA09263.1| whiK [Streptomyces coelicolor A3(2)]
 gi|29608657|dbj|BAC72710.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
 gi|178465068|dbj|BAG19588.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|194342009|gb|EDX22975.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|197695725|gb|EDY42658.1| two-component system, regulatory protein [Streptomyces sp. SPB74]
 gi|197705685|gb|EDY51497.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197717529|gb|EDY61563.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197722965|gb|EDY66873.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|260647607|emb|CBG70712.1| putative luxR family regulator [Streptomyces scabiei 87.22]
 gi|282564615|gb|EFB70151.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|289699847|gb|EFD67276.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|291340651|gb|EFE67607.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291350075|gb|EFE76979.1| whiK [Streptomyces roseosporus NRRL 15998]
 gi|291354787|gb|EFE81689.1| whiK [Streptomyces albus J1074]
 gi|292834300|gb|EFF92649.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|294327128|gb|EFG08771.1| Two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
 gi|297159676|gb|ADI09388.1| putative luxR family regulator [Streptomyces bingchenggensis BCW-1]
 gi|302428478|gb|EFL00294.1| whiK [Streptomyces sp. SPB78]
 gi|302445211|gb|EFL17027.1| whiK [Streptomyces sp. C]
 gi|302460887|gb|EFL23980.1| two-component system, regulatory protein [Streptomyces
           himastatinicus ATCC 53653]
 gi|302471231|gb|EFL34324.1| two-component system, regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302476541|gb|EFL39634.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
 gi|306883289|gb|EFN14346.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|320009036|gb|ADW03886.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
 gi|326657508|gb|EGE42354.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|328884500|emb|CCA57739.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
 gi|329302661|gb|EGG46551.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|332746440|gb|EGJ76881.1| putative two-component regulator [Streptomyces sp. Tu6071]
          Length = 203

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +      G    LT RE++ L  +S G+++ EI   L +S +TV  +   + +K     R
Sbjct: 130 RLRSAEMGAAPTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKLGASDR 189

Query: 234 SGAIAYAVRNNIV 246
           + A+A   R  +V
Sbjct: 190 AHAVALGFRWGLV 202


>gi|15966696|ref|NP_387049.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075968|emb|CAC47522.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
          Length = 237

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 79/229 (34%), Gaps = 20/229 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMR-MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +  R+DL A  +       +  R +  L++   A   L           L  + ++++P 
Sbjct: 1   MLARTDLFAECLTQAIGARFQDREVVRLSD---ADSLLDGNLVDVTLVMLYRVPTANFPS 57

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +        K     ++     L   V H + E +            L   +      +
Sbjct: 58  IIRMIHEFHPKAAIGLLVDNAEGLDASVSHLVEEGMIH------GVLPLNLHLDVCLTAI 111

Query: 145 MLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFE---LTGREVECL 194
            LL   G       L  +         LA       ++ D    K F    LT RE++ L
Sbjct: 112 DLLMKGGEHFPAALLRRLAPKNPGERDLATRNETASENVDPERRKGFGQVVLTTREIQIL 171

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             I  G  +  IA  LG+S NTV  ++ +I +K   + R+ A +   RN
Sbjct: 172 DLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFRN 220


>gi|88703812|ref|ZP_01101527.1| transcriptional regulator malT [Congregibacter litoralis KT71]
 gi|88701639|gb|EAQ98743.1| transcriptional regulator malT [Congregibacter litoralis KT71]
          Length = 888

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 53/114 (46%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           + F+  ++ + ++                   L   +A+M  +  +   +   L+ RE+E
Sbjct: 775 VLFEERQLLLPILQYILGPDSSAAMAPARASFLRKLRADMQVTAQLIEQEQCVLSIREIE 834

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +  G+++ EIA    +S NTV  ++ +I  K    +R  A+A+A+R+ ++
Sbjct: 835 ILRCLMMGESNREIAAGKALSINTVKFHLKNIFSKLGASSRDEAVAFAIRDQLL 888


>gi|327330300|gb|EGE72049.1| nitrate/nitrite response regulator protein NarL [Propionibacterium
           acnes HL097PA1]
          Length = 210

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G LA   A    +          LT RE++ L   ++G ++ +IA  L +S  TV  +++
Sbjct: 128 GALAPAVATRLMAR--MRSPRTSLTARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +RS A+A A     +
Sbjct: 186 HIYTKLGVTSRSAAVAKARDIGFI 209


>gi|313837284|gb|EFS74998.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928042|gb|EFS91873.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314972055|gb|EFT16153.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328907167|gb|EGG26933.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 217

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 10/163 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIG 143
           V+   +   +    + +  +++   +  T   +      +D           +   +  G
Sbjct: 54  VQMPVMDGIEATTRIRE-FSDVKIVILTTFDRDDYLFDALDAGASGFMLKNAEADLLVTG 112

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     ++  +    +    A  A+     D        LT RE+E    ++ G ++
Sbjct: 113 LRQVAEGHALLAPEVTRRVI---ARSASRLAKLDRRVE---NLTSREIEVTRLVARGLSN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  +++S + K   + R   +  A  + ++
Sbjct: 167 AEIAAELTVSEATVKTHVSSCLTKCDLRDRVQLVVLAYESGLI 209


>gi|297155229|gb|ADI04941.1| two-component regulator [Streptomyces bingchenggensis BCW-1]
          Length = 181

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 7/142 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLT---FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
           V  T  ++ T P     +   L    F           +     + + D +   GL    
Sbjct: 37  VSGTTTDDFTLPGTQSQKAIDLLEKEFPKGSADGAAARVVGIRAVAVGDSVISPGLTRKL 96

Query: 169 QANMFKSYDVHWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                KS   H  +       LT RE E LT ++ G T+ EIA  L ++ +TV ++++ I
Sbjct: 97  IDAFTKSRPGHTPEQDRQLARLTEREREVLTGVATGWTNTEIAERLCLAESTVKSHVSRI 156

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R   + +A    +V
Sbjct: 157 LTKIGARDRVQVVIFAYDVGLV 178


>gi|271965920|ref|YP_003340116.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509095|gb|ACZ87373.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 219

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+A Y A    S          LT RE E    ++ G ++DEIAV + IS  T   +++ 
Sbjct: 135 LIAEYVARRPASAPEGLDV---LTNREREVTALVARGLSNDEIAVHMVISPTTAKTHVSR 191

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
            M K   + R+  + +A  + +V
Sbjct: 192 AMTKLRARDRAQLVVFAYESGLV 214


>gi|228919418|ref|ZP_04082785.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840249|gb|EEM85523.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 217

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 9/177 (5%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           ++L  ++S  +   ++  + +   D       V ++  E+   +  T  ++     G+ N
Sbjct: 36  EELLELLSHTYAEIILMDIRMPIMDGIVATKLVKEKYPEIKVIILTTFNDSEYIFTGLKN 95

Query: 129 R---YCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLL--AAYQANMFKSYDVHWGK 182
               Y     D   I   +   F    ++     L  +  L  A Y+  +   ++ +   
Sbjct: 96  GADGYILKDSDSQEIIESIKTAFEGNILLNPKITLKVVKALNSANYKETVKAEFNENKQP 155

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              LT RE+E    I EGK++  I+  L I+  TV NY++ I+ K     R+    Y
Sbjct: 156 SNLLTPRELEVAKHIMEGKSNKAISKELFITEGTVKNYVSRILEKLELNNRTELTLY 212


>gi|124009769|ref|ZP_01694439.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
 gi|123984274|gb|EAY24623.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
          Length = 218

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 8/175 (4%)

Query: 78  VSSDWPFDLVRCMALS---EKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYC 131
           V +  P  ++  + +      +    +  +  E+   V     E    I       N Y 
Sbjct: 44  VDAQPPDVILMDLKMPVMDGMEATKIIKAKYPEVKVLVLSMYDEEKFIIHCLELGANGYL 103

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               D   +   +  +  K             +L              +    ELT RE 
Sbjct: 104 LKNTDPDELVHAIGTVMAKDFYFNN--HISTVMLKGLNQKKRAKGKPQFENSIELTKREQ 161

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I +  T+ E+A  L IS  TV  +  +++ KT  K  +G + +A++N +V
Sbjct: 162 EVLELICKELTTPEMAEKLFISNRTVEGHRKNLLEKTGAKNTAGLVVFALKNELV 216


>gi|332991726|gb|AEF01781.1| two component LuxR family transcriptional regulator [Alteromonas
           sp. SN2]
          Length = 219

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 11/173 (6%)

Query: 76  SIVSSDWPFDLVR-CMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN-----ITPPAGMDN 128
            ++ +D  FDLV   + + E      +L+ R      PV     E      +   +    
Sbjct: 41  EVLEADAAFDLVMLDLNMPETCGLNGLLEIRNQHPNLPVVIISAETEKHNILQTISYGAV 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S +  +  I   +  +F     +  + L      ++ +  + K   +   +   LT 
Sbjct: 101 GFISKSSKIEEIATSVESIFEGNVCLPSEILR----TSSTRNRVKKEDAISLDQIRSLTR 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +E+  L ++++G  +  IA  L IS  TV ++++SI++K     R   +A A 
Sbjct: 157 KELAVLKYLTQGLANKVIAYELNISETTVKSHVSSILKKLGASNRVKVVASAA 209


>gi|329297529|ref|ZP_08254865.1| LuxR family two component transcriptional regulator [Plautia stali
           symbiont]
          Length = 198

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +     G  L   +  ++L   +       +     A    +         +LT RE++ 
Sbjct: 86  MDAGADGYQLKDSEPELLLAQVMRGAQGENVFREVVAEYLATRQPSANPFRQLTERELDV 145

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L  ++ G ++ EIA  L IS  TV  +I +++RK   ++R  A  
Sbjct: 146 LQEVARGLSNKEIAATLHISEETVKVHIRNLLRKLDVRSRVAATV 190


>gi|238060304|ref|ZP_04605013.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|330469356|ref|YP_004407099.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|237882115|gb|EEP70943.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|328812327|gb|AEB46499.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 222

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202
           +    P   ++   R       A   A++ ++          +L+ RE + L  +++G +
Sbjct: 111 VPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMS 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              IA  L +S +T   +I+ +  K     R+ A+  A+R  ++
Sbjct: 171 VAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214


>gi|254442908|ref|ZP_05056384.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257216|gb|EDY81524.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 200

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 45/82 (54%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +     ++ +S D    +   LT RE E LT+I+ G ++ +IA+ LG+S  T++N+  S+
Sbjct: 113 ITEVLRSVVRSIDRSSERTDNLTAREREVLTFIASGNSNKDIALKLGLSVKTIDNHRCSM 172

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           MRK      +    YAV + IV
Sbjct: 173 MRKLDLHNVADITRYAVEHRIV 194


>gi|111025634|ref|YP_708054.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110824613|gb|ABG99896.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1084

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 40/101 (39%)

Query: 139  RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            R  IG        R   R         A ++  +  S      +   LT RE +    I+
Sbjct: 977  RRLIGAKAFETAHRKGQRLSFDAAIAYALHEQPLNASDAPVVDRSVRLTKRERQVADLIA 1036

Query: 199  EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EG T+  IA  L IS  TV +++  I+ K    +R+   A+
Sbjct: 1037 EGLTNQAIADRLVISPRTVQSHVEHILAKLGFTSRTQIAAW 1077


>gi|315634983|ref|ZP_07890264.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter
           segnis ATCC 33393]
 gi|315476245|gb|EFU66996.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter
           segnis ATCC 33393]
          Length = 209

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE++ L  ++ G ++ +IA  L IS  TV  +I +++RK    +R  A      + 
Sbjct: 149 LTDREIDVLRLVATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYFEHK 207


>gi|284041874|ref|YP_003392214.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946095|gb|ADB48839.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 981

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +       +  +T RE E LT ++EG+T+ +IA  L I+  T + +++ I+ K   + R 
Sbjct: 910 APPPDRIAELGITAREREVLTLLAEGRTNRQIAETLVIAEKTASVHVSRILAKLDARNRG 969

Query: 235 GAIAYAVRNNI 245
            A A A R  +
Sbjct: 970 EAAAIARRLGL 980


>gi|224026499|ref|ZP_03644865.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM
           18228]
 gi|224019735|gb|EEF77733.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM
           18228]
          Length = 194

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 154 ILRDRLWE-IGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           + +D+L + I  L  Y  +M           + EL+ RE+E L  I++G  + EIA  L 
Sbjct: 95  LPQDQLVQAIMQLRKYGHSMHPHPSTQQQDTEHELSPREIEVLVLITKGLINKEIADKLN 154

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV ++  +I  K   K+ SG   YAV    +
Sbjct: 155 ISLTTVISHRKNITEKLGIKSVSGLAIYAVMRGYI 189


>gi|254381656|ref|ZP_04997020.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194340565|gb|EDX21531.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 221

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 10/169 (5%)

Query: 83  PFDLV-RCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P D+V   + +   D      +   E     +         E+I    G   R       
Sbjct: 56  PVDVVLMDLRMPVMDGTETTRRLAEEHPEVAVVVLTTFADDESILGALGAGARGYLTKNA 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             +     +     G+ +L DR  +  LL        ++         +LT RE E L  
Sbjct: 116 GRQDIARAIRAAAAGQSVL-DREVQDRLLVTV---RTRAPAPARPLPEDLTPREREVLAL 171

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I +G  +  IA  L +S  TV  +I ++  K   + R+ A+  A+   +
Sbjct: 172 IGQGLPNRAIAQRLFVSEATVKTHINNLFAKAGIRDRADAVRRAIAAGL 220


>gi|28869442|ref|NP_792061.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852683|gb|AAO55756.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 87

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+
Sbjct: 20  PDVQLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAI 79

Query: 242 RNNIV 246
           R  ++
Sbjct: 80  RQGVI 84


>gi|325677216|ref|ZP_08156882.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325551913|gb|EGD21609.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 283

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWISEGKTSDEIAVIL 210
           + DRL +  L A  +A   K   +  G     +  L+ RE E L  ++ G  + EIA  L
Sbjct: 187 IADRLDDASLTAEVEAVEQKLRGLTTGPSAPAEVALSRREFEVLAHVALGCRNAEIAERL 246

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+  +T+ +Y+ +IM K    +R  A+  A R  ++
Sbjct: 247 GLRLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGLI 282


>gi|289641790|ref|ZP_06473948.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508434|gb|EFD29375.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 377

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              +    ++       I L  R     L A   A +  +      K   LTGRE+E LT
Sbjct: 265 SAMQTVESVLDDLAGAEIDLASREHATALAATRPARLLHT--TRSSKMESLTGRELEVLT 322

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ G T++ IA  L I+  TV +++  I+RK   + R+ AI+  +R  I
Sbjct: 323 LMATGATNNRIAEKLVITNGTVKSHVKRILRKLGAENRAEAISQYLRLTI 372


>gi|269139570|ref|YP_003296271.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202]
 gi|267985231|gb|ACY85060.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202]
 gi|304559458|gb|ADM42122.1| Transcriptional regulator CsgD [Edwardsiella tarda FL6-60]
          Length = 210

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL A Q +      +   +   LT RE+E L  + +G ++ +I+ IL IS NTV  +I +
Sbjct: 129 LLVAAQEDE-PGEAIPVPRLTRLTLRELEVLKAMQQGASNLDISRILYISENTVRTHIYN 187

Query: 224 IMRKTATKTRSGAIAYA 240
           I +K A K R  A+ +A
Sbjct: 188 IFKKIAVKNRIQAVKWA 204


>gi|238062942|ref|ZP_04607651.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237884753|gb|EEP73581.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 217

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           VR   L        +L+    +   +  T  ++      +D     +   + D   +  G
Sbjct: 55  VRMPRLDGLAAAAELLRVLPGIGVAMLTTFGDDEYVARALDSGARGFLLKSGDPRELLTG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  +  D      ++   +A           K  +LT RE + L  +  G ++
Sbjct: 115 IHAIADGGAYLSPD--ITAQVIGRLRATGLGRAAEARAKVQQLTDRERDVLALVGAGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +   TV  ++++I+ +     R  A   A    +V
Sbjct: 173 AQIARRLHLVEGTVKGHVSTILARLGLANRVQAAVLAHEAGLV 215


>gi|146277715|ref|YP_001167874.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555956|gb|ABP70569.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 210

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 19/220 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMA 91
           + + + +       M +   + ++ AS  + VR     ++ L+ I     PFD+ +  + 
Sbjct: 4   MPQKLSVLIADDHEMVVEMFSLFLAASSEMTVRTAKSLDEALERI-KEHGPFDVTLLDLN 62

Query: 92  LSEKDKYYNVLQRPT-ELFCPVFHTL----PENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +   +    + +        PV        P  +            L     R     + 
Sbjct: 63  MPGMNGVAGLTRAIKLSAGKPVAILTSNPTPRMVDEILAAGASGIVLKTTPVRSLGNAIR 122

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
               G   L   L           +  ++ D   G+   LT +E+  +++++EG+ + EI
Sbjct: 123 FMHAGEHYLPLELAR---------DRRQAPDSSGGR---LTEKEMLVMSYLAEGRQNKEI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L ++  T+  ++ SI +K     R+ A+  A    I+
Sbjct: 171 AHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 210


>gi|7385146|gb|AAF61717.1|AF232768_2 acylhomoserine lactone dependent transcriptional activator
           [Pseudomonas fluorescens]
          Length = 242

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 68/199 (34%), Gaps = 18/199 (9%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
             L  Y  A++ L+       +  +   + S  PF     +  +  ++   + +R ++  
Sbjct: 60  RWLKAYKNANYHLI-------DPIIHHGLKSCAPFSWSDALQAAPCERSRELFRRSSQYR 112

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAA 167
                T              + SL+   +  +          +  L+  L      LL+ 
Sbjct: 113 ICTGATFT-----LHDAGGMFSSLSLCNSGPQAEFERRMADQQGHLQMALIRFHGRLLSL 167

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              +              L+ RE+  L W+  GK   EIAVI  IS  TV  ++++I  K
Sbjct: 168 RAMDELFPEPQTG----PLSARELGVLKWVMMGKAYREIAVICAISERTVKFHMSNISGK 223

Query: 228 TATKTRSGAIAYAVRNNIV 246
                   A+  A R  I+
Sbjct: 224 LQVCNAKQAVYEAQRQGIL 242


>gi|24374816|ref|NP_718859.1| LuxR family DNA-binding response regulator [Shewanella oneidensis
           MR-1]
 gi|24349500|gb|AAN56303.1|AE015768_4 DNA-binding response regulator, LuxR family [Shewanella oneidensis
           MR-1]
          Length = 206

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT  +   L  I+ G ++  IA  L IS  TV  +I++I  K   K R+ A 
Sbjct: 149 LTPSQFRVLHLIAAGHSNKTIADSLNISEKTVKAHISAIFEKLDVKNRTQAA 200


>gi|319795110|ref|YP_004156750.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597573|gb|ADU38639.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS]
          Length = 155

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 11/127 (8%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA-----AYQANMFKSYDVH 179
             ++   +L F + R         P    I R  L  I   A     +  A   ++    
Sbjct: 27  AREDELAALMFSMERS------HSPGASRIARHMLALIAAAAKSRPPSAIATKPRTGAAP 80

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              +  L+ RE++ L  +S+G ++  IA  L  S NT++  I SI RK    +R+ A+  
Sbjct: 81  PAANVSLSPRELQVLQLVSQGLSNRRIAEALSRSANTIDTQIKSIYRKLDVNSRTRAVRA 140

Query: 240 AVRNNIV 246
           A+   ++
Sbjct: 141 AMEQGLL 147


>gi|301631649|ref|XP_002944911.1| PREDICTED: oxygen regulatory protein nreC-like [Xenopus (Silurana)
           tropicalis]
          Length = 241

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  +++G ++ EIA  L +SR TV +++  + RK A  +R  A+  A    +
Sbjct: 180 LSVREGQILRLVADGLSNREIAEQLFLSRYTVESHVKRVYRKLAVSSRMNAVREARSRGL 239

Query: 246 V 246
           +
Sbjct: 240 L 240


>gi|297162688|gb|ADI12400.1| two component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +A + +      L     +    F              + +     
Sbjct: 52  DVVLMDIRMPQLDGLAATRRITEDPALAEVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+A + A   +          ELT RE E + 
Sbjct: 112 EPEELLRAVRAVVAGDALLSPGVTRR--LIAEFAARSKEPAPAAVLA--ELTEREREVMA 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 168 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMIKLGARDRAQLVVLAYESGLV 218


>gi|229488619|ref|ZP_04382485.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
 gi|229324123|gb|EEN89878.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
          Length = 288

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A+   S +        L+ RE E + +++ G  + EIA  L +S  T+  Y+ ++M K  
Sbjct: 211 ASPKPSANTPVANTVVLSPREREVMGYVALGLRNAEIAERLSLSVETIKTYMRNLMGKLD 270

Query: 230 TKTRSGAIAYAVRNNIV 246
            ++R  A+  A R  ++
Sbjct: 271 VRSRHEAVVEARRQGLI 287


>gi|256424453|ref|YP_003125106.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256039361|gb|ACU62905.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 219

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 4/181 (2%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM 126
               L  I+    P  ++  + +   D       V ++   +   V     ++      +
Sbjct: 38  DGAHLLEIMEEQQPDVILMDLKMPNMDGIEATKKVREKYANVKVIVLTMYEDDNFIVHLI 97

Query: 127 DNRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           +N   + L  +     I   +     +    +    + LL        + +   +  + +
Sbjct: 98  ENGANAYLLKNAEPNEIYEAICTTYEKGFYFNENVNLALLKKVMHKNKQHFKPTFRNEVQ 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I    T+ EI+  + +S  TV      ++ KT  K   G + +A RN I
Sbjct: 158 LTDRELEVLRLICNEHTTQEISKEIFLSPRTVEGLRQKLLEKTGAKNIVGLVMHAFRNGI 217

Query: 246 V 246
           +
Sbjct: 218 I 218


>gi|111022138|ref|YP_705110.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821668|gb|ABG96952.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 222

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 38/82 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L  Y+       D        LT RE E L ++++G ++ +IA  L +S  TV N++ +
Sbjct: 140 VLGEYRRMSSAPADEQGLAVPRLTERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQA 199

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
            +RK     R     YA+   +
Sbjct: 200 TLRKLQLANRVELTRYAIEQGL 221


>gi|300088598|ref|YP_003759120.1| MalT-like ATP-dependent transcriptional regulator [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528331|gb|ADJ26799.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 904

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 16/245 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D+ R   +       DL   +     +V   +  +    ++  +  LL R          
Sbjct: 662 DDCRVRLLLAKGRMDDLNRWVDASGLSVDGELSYHYDLHHINLARVLLARARHAPTAAGA 721

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
                     L R +  +EK  +     +   L   VF    +N +  A  D    SL  
Sbjct: 722 HASLRQASSLLTRLLIAAEKAGWVYETIKILVLQAQVFAESNDNKSLQALSD--ALSLAE 779

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI------GLLAAYQANMFKSYDVHWGKDFE---- 185
               +RI +    P  +++               LLAA++A   K+ D            
Sbjct: 780 PGGFVRIFVDEGPPMAKLLSEAAAHGNMPDYVGKLLAAFEAEKQKTCDKPDLSPCPSVQP 839

Query: 186 ----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE+E L  +++G ++ +I   + ++ +TV  +   I  K   + R+GAIA A 
Sbjct: 840 LIEPLSQRELEILRLMAQGLSNRQICERVFLALDTVKGHNRKIFDKLQVQRRTGAIARAR 899

Query: 242 RNNIV 246
              ++
Sbjct: 900 EFGLL 904


>gi|256391489|ref|YP_003113053.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357715|gb|ACU71212.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 253

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 3/127 (2%)

Query: 113 FHTLP--ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
           FH LP    +  P G   +           RI ++           D +     +     
Sbjct: 123 FHRLPVFPALFAPLGARRQLVMAVRPDEERRIVVLFNRASPDFTQHD-VAVAEAVRHRIG 181

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                +     +  +++ RE + L  +  G T  +IA  LGIS  TV+ ++     K   
Sbjct: 182 RALAPFGGPGARREKVSPREADVLDLLCRGLTDRQIATRLGISPRTVDKHLEHAYVKLGV 241

Query: 231 KTRSGAI 237
           + R  A 
Sbjct: 242 RCRVQAA 248


>gi|238020554|ref|ZP_04600980.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147]
 gi|237867534|gb|EEP68540.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147]
          Length = 224

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 69/175 (39%), Gaps = 13/175 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQ----RPTE--LFCPVFHTLPENITPPAGMDNRY 130
           +V    P  ++  + + + +    + Q    RP +  +   V     +         + +
Sbjct: 43  LVEQTRPDVVLLDLNMPQMNGRDALAQILSSRPEQKVIMLTVSEDSEDLTECIRLGASGF 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                +         L+    +++  D  +   + A    ++ +          +LT RE
Sbjct: 103 LLKNIN------ANYLIESIKKVVNGDNAYSPEMTARLVQSLIRPAQAESALS-QLTPRE 155

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E L  ++ G ++  IA  L ++ +T+  ++ +I+RK    +R  A  +A+++ +
Sbjct: 156 LETLGHLAAGYSNKAIAKNLNLAESTIKVHVQNILRKLKLDSRVQAAVFAIQHKV 210


>gi|170697201|ref|ZP_02888295.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137821|gb|EDT06055.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 518

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 122 PPAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
            P  +  + C L    D++  +   M L       ++D  W    L    AN+ ++    
Sbjct: 364 EPVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPD 423

Query: 180 WGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI 
Sbjct: 424 AGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIV 483

Query: 239 YAVRNNIV 246
           +A    IV
Sbjct: 484 WARERGIV 491


>gi|166710760|ref|ZP_02241967.1| putative transcriptional regulator, LuxR family protein
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 235

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           LL A  A   K       K  +      L+ RE + L+ +  G T+  +A  LGI+  TV
Sbjct: 146 LLPAMVAEPAKQIPTRRRKPLQDDRLGALSKREKQVLSLLPRGLTNASLAAELGIAPGTV 205

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++  I++K   K R+ A  YAV++ +
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|323968034|gb|EGB63445.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|327252458|gb|EGE64117.1| response regulator [Escherichia coli STEC_7v]
          Length = 215

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 95  VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIAAVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 200 SRVAATILFLQQR 212


>gi|320160659|ref|YP_004173883.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994512|dbj|BAJ63283.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 215

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 35/54 (64%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L ++++G ++ EIA +L +S  TV+ +++ I+ K    +R+ A+ YA++  IV
Sbjct: 159 VLQFMAQGYSNAEIARLLVVSNATVHTHVSRILSKLNVSSRTQAVLYALKRGIV 212


>gi|295112119|emb|CBL28869.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Synergistetes bacterium SGP1]
          Length = 229

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKSYDVHWGKD 183
           D+  C  T     ++  ++    +  +I   R     E  +       +  S+     ++
Sbjct: 85  DDEDCLATLSAEGVKGFVLKSSGRSELIAAIRAACRGEPYVDPKVAGKLMTSFSRRKNEN 144

Query: 184 F---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +L+ RE   L W+S+G ++ E+A    +S  TV N+++ +++K   + R+ A   A
Sbjct: 145 SLLDDLSPREKVVLYWLSQGMSNQEVAQKTVLSEKTVKNHVSHMLKKLELRDRTQAAILA 204

Query: 241 VRNN 244
            +  
Sbjct: 205 WKLG 208


>gi|228949758|ref|ZP_04111975.1| Response regulator receiver [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809915|gb|EEM56319.1| Response regulator receiver [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 503

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L    F              + Y   + D   +   + L++    +I  D L+     
Sbjct: 365 RVLILSTFQNTERAKEIIRNGADGYVLKSIDSRELAESIRLVYRGSTMITHD-LFHRMWE 423

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +  +F+S     G ++ LT RE+E L  +S+G     IA  L +S  TV NY +++ 
Sbjct: 424 ENEETGLFESQSD--GIEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLY 481

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   K R  A+  A    ++
Sbjct: 482 EKLGVKNREEAVQKAKDIGLL 502


>gi|148557095|ref|YP_001264677.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148502285|gb|ABQ70539.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 855

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 53/166 (31%), Gaps = 1/166 (0%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-RYCSLTFD 136
           V+S      V    L +      V  R   L         E   P A         L  D
Sbjct: 688 VASPETALSVAQAMLRDGQAGGRVGTRIKALVLTSLAHEREGDRPAADRSMTEALRLAVD 747

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + +            I+ R    E     A                 +LT RE E L  
Sbjct: 748 ESVVAPFAEEGPALHPILERIAREEPTSKLARHLEKILQLISASSHPSQLTDREAEILAH 807

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +++G ++  IA  L ++ NTV  ++ +I  K    +R  A A A R
Sbjct: 808 LADGVSNKLIARRLALTENTVKFHLKNIFAKLGVASRKEAAACAFR 853


>gi|115359991|ref|YP_777129.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285279|gb|ABI90795.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 514

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 122 PPAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
            P  +  + C L    D++  +   M L       ++D  W    L    AN+ +     
Sbjct: 364 EPVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRENAPD 423

Query: 180 WGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI 
Sbjct: 424 AGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIV 483

Query: 239 YAVRNNIV 246
           +A    IV
Sbjct: 484 WARERGIV 491


>gi|333002916|gb|EGK22472.1| response regulator [Shigella flexneri K-272]
 gi|333016922|gb|EGK36246.1| response regulator [Shigella flexneri K-227]
          Length = 215

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 95  VFALIDAGADGYLLKDSDPEVLLEAIRTGAKGSKVFSERVNQYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 200 SRVAATILFLQQR 212


>gi|325104954|ref|YP_004274608.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM
           12145]
 gi|324973802|gb|ADY52786.1| transcriptional regulator, LuxR family [Pedobacter saltans DSM
           12145]
          Length = 235

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 43/69 (62%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H+    +LT RE E ++ +S+GK+S EIA +L IS NTV  +  +I++K   K+ +  +
Sbjct: 165 QHYPNFAKLTKREKEIISLLSDGKSSPEIADMLFISANTVITHRKNIVKKLGMKSFAHLV 224

Query: 238 AYAVRNNIV 246
            +A+  ++V
Sbjct: 225 RFAIAFDLV 233


>gi|302869001|ref|YP_003837638.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315504528|ref|YP_004083415.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302571860|gb|ADL48062.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315411147|gb|ADU09264.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 222

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202
           +    P   ++   R       A   A++ ++          +L+ RE + L  +++G +
Sbjct: 111 VPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMS 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              IA  L +S +T   +I+ +  K     R+ A+  A+R  ++
Sbjct: 171 VAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214


>gi|229528208|ref|ZP_04417599.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
 gi|229334570|gb|EEO00056.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
          Length = 250

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRC 89
           L++++       +    +     + G    +        +  ++ I  +  DW FD    
Sbjct: 20  LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDW-FDDGEN 78

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--------PAGMDNRYCSLTFDVARIR 141
           +  +   KY  + +   E   P F T   ++          P G       +        
Sbjct: 79  IDAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGL 138

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISE 199
            G + L  K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 139 EGAVSLGGKAIDSSPRARCELSLLSTYAFFAARRLLEYSDPNRSALLSKREKEVLSLTAL 198

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 199 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243


>gi|182436316|ref|YP_001824035.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464832|dbj|BAG19352.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 354

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S      + + L+ REVE +  I+ G ++ +IA    IS  TV N+I  I  K  + +RS
Sbjct: 277 STPAPNRQQYRLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRS 336

Query: 235 GAIAY 239
            AIA+
Sbjct: 337 EAIAH 341


>gi|37223230|gb|AAQ90214.1| LuxR [Vibrio mimicus]
 gi|37223256|gb|AAQ90231.1| LuxR [Aliivibrio fischeri]
          Length = 224

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 17/210 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++            +  +T+ V   ++LL         K D  +  ++P    +   
Sbjct: 14  IINKIKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYD 73

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARI 140
            +   KY  ++        P+   + EN        N              S     A  
Sbjct: 74  DANLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANN 133

Query: 141 RIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
             G++      +    D L       I L+     + ++  ++   K + +LT RE ECL
Sbjct: 134 GFGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECL 193

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASI 224
            W  EGK+S +I+ ILG S  TV  ++ + 
Sbjct: 194 AWACEGKSSWDISKILGCSERTVTFHLTNA 223


>gi|255012345|ref|ZP_05284471.1| transcriptional regulator [Bacteroides sp. 2_1_7]
 gi|298374802|ref|ZP_06984760.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19]
 gi|298269170|gb|EFI10825.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19]
          Length = 193

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 39/72 (54%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S +     + +L+ REV+ L  I +G T+ EIA  L IS NTV  +  +I  K   KT S
Sbjct: 115 SGNTTTENNKDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVS 174

Query: 235 GAIAYAVRNNIV 246
           G   YA+ N I+
Sbjct: 175 GLTFYAIMNGII 186


>gi|229520043|ref|ZP_04409472.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80]
 gi|229525089|ref|ZP_04414494.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis
           VL426]
 gi|229338670|gb|EEO03687.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis
           VL426]
 gi|229342992|gb|EEO07981.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80]
 gi|327483254|gb|AEA77661.1| Transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4]
          Length = 214

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  Y+   F+S+ V      +LT RE++ L  +  G ++ +IA  L IS  T
Sbjct: 129 PRHVSSQLLHYYRY-AFQSHQVQAT--VDLTAREIQILRCLQTGASNMQIAENLFISEFT 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V +++  I +K   K R  AIA+ V  N++
Sbjct: 186 VKSHLYQIFKKLNVKNRVKAIAW-VNQNLL 214


>gi|260598854|ref|YP_003211425.1| transcriptional regulator NarP [Cronobacter turicensis z3032]
 gi|260218031|emb|CBA32732.1| Nitrate/nitrite response regulator protein narP [Cronobacter
           turicensis z3032]
          Length = 210

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 22/200 (11%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF------ 113
           H L+V       + L  ++ +D  F  V   A S  +      +   ++           
Sbjct: 4   HVLIVDDHPLMRRGLRQLLETDARFR-VTGEASSGAEAIAQAQELAPDVILLDLNMRGLS 62

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----AYQ 169
                N+    G+  R   LT   AR  +  M+       +L+D   E  L A    A  
Sbjct: 63  GLDTLNMLRRDGVSARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEALLEAIRDGAAG 122

Query: 170 ANMF-----------KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           A +F           +  +        LTGRE++ L  ++ G ++ +IA  L IS  TV 
Sbjct: 123 AGVFSEQVQAYLLTREPEEQRNAPFALLTGRELDVLQEVARGLSNKQIAATLHISEETVK 182

Query: 219 NYIASIMRKTATKTRSGAIA 238
            +I +++RK   ++R  A  
Sbjct: 183 VHIRNLLRKLNVRSRVAATV 202


>gi|159039051|ref|YP_001538304.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157917886|gb|ABV99313.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 221

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202
           +    P   ++   R       A   A++ ++          +L+ RE + L  +++G +
Sbjct: 110 VPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMS 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              IA  L +S +T   +I+ +  K     R+ A+  A+R  ++
Sbjct: 170 VAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213


>gi|186470967|ref|YP_001862285.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197276|gb|ACC75239.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 231

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 12/157 (7%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
               +  +   L   V     +      G    Y   T D + +   ++ +      I  
Sbjct: 73  GLAELAPQARVLMLTVSEDEQDLAAALRGGARGYLLKTVDSSAMADAIVRIMAGESTISP 132

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF----------ELTGREVECLTWISEGKTSDEI 206
           +   +  L++A+QA                         L+ R+ E L  I+ G+T+ EI
Sbjct: 133 EMTGK--LVSAFQALQPGEVPPAASPSVLAPAVPDPIESLSARQEEILAHIARGETNKEI 190

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           A  L I+  TV  ++  +++K    +R  A  YAV  
Sbjct: 191 ARALNIAETTVKIHVQQVLKKLKLASRVQAATYAVMR 227


>gi|88808256|ref|ZP_01123766.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
 gi|88787244|gb|EAR18401.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
          Length = 235

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           DL     ++   +    L     L   V    T+ +           + S         I
Sbjct: 76  DLESGYGINLLRRVKAELPTCQLLIVLVRETQTVVQEAMEAFADGVVFKSSLGTGRGDLI 135

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
             +    +G +   +++  I              D+    + EL+ RE+E    ++ G  
Sbjct: 136 SALRTLAEGGVYFPEQIRRIAA-------STPQPDLPPLVE-ELSPRELEVAAGVARGLK 187

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ IA +LG+S  TV +++ + M K   + R+     A+   ++
Sbjct: 188 NNAIASLLGLSVETVKSHVGNAMDKLGARDRTQMAVMALLYGLI 231


>gi|223938200|ref|ZP_03630096.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893072|gb|EEF59537.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 224

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +           +    L   +  +  G     P     +   L E+   A    +
Sbjct: 92  VQKVMEAGALGYLVKQSAADDLLTAIREVYKGNNFFSPA----IAKGLSELKREAFTNGH 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F+   VH      LT RE E L  I+EG+ + +IA  L IS  TV  +   +M K    
Sbjct: 148 AFRESGVH------LTAREREVLQLIAEGRANKQIADDLAISIKTVEKHRQQVMNKLNIH 201

Query: 232 TRSGAIAYAVRNNIV 246
             +    YA+   +V
Sbjct: 202 DVASLTRYAISKGMV 216


>gi|294012984|ref|YP_003546444.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292676314|dbj|BAI97832.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 248

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 16/222 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            L  +  +         M  + E +G  +F L +           I   ++P       A
Sbjct: 3   FLQCINQVRTRDDMGSVMRVIAEQLGFQYFALTQHVDVVAAGSGVIHIHNYPDRWADFYA 62

Query: 92  LSEKDKYYNVLQRP-------TELFCPVFHTLPENITP------PAGMDNRYCSLTFDVA 138
            +       V +              P    L             AG+ + +   +    
Sbjct: 63  ANALGITDPVHRACHMTSWGFRWTQMPTLIPLTSGDHRHLARGRQAGIGDGFTIPSNIGG 122

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLT 195
           +            R +  DRL    LL  Y  +  +       +      +T R+ +C+ 
Sbjct: 123 QPPGSCTFANEGDRPLREDRLLLAQLLGNYAFDAARRLWSMPRRAMTAPLITDRQRDCVQ 182

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           W + GK+  E + IL ISR TV ++I     +     R   +
Sbjct: 183 WAARGKSDWETSQILDISRETVTSHIKDACARYQVNKRILLV 224


>gi|17549201|ref|NP_522541.1| nitrate/nitrite response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431453|emb|CAD18131.1| probable nitrate/nitrite response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 222

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 6/142 (4%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   V     E           Y     +   +  G+        +I         L+A 
Sbjct: 80  VMLTVSEEADELKAALRDGARGYLVKNIEADTLVAGVRRAAAGEPVISES--MTAKLVAH 137

Query: 168 YQANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++A    +              LT RE E +  ++ G+++ EIA  L ++ +TV  ++ +
Sbjct: 138 FRAPEKAAPAAPAAAASVSADRLTPREREIVRGLARGESNKEIARALDVAESTVKIHVQN 197

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
           I++K    +R     YAV + +
Sbjct: 198 ILKKLNLTSRVQVAVYAVEHGL 219


>gi|293390864|ref|ZP_06635198.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951398|gb|EFE01517.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 209

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 12/137 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--------RLWEIG----LLAA 167
                G+D R   LT   A+  I  ++       +L+D        +L  I     +L+ 
Sbjct: 71  ALRAEGVDARIVILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQLKRIARGEVILSD 130

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              N+           + LT RE+  L  I+ G ++ +IA  L IS  TV  +I +++RK
Sbjct: 131 SIKNLLLERQSAQEPIYSLTDREMGVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRK 190

Query: 228 TATKTRSGAIAYAVRNN 244
               +R  A      + 
Sbjct: 191 LNVHSRVAATVLYFEHK 207


>gi|253575646|ref|ZP_04852982.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844984|gb|EES72996.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 74

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K R+ A+
Sbjct: 4   SDRNSKFLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRAQAV 63

Query: 238 AYAVRNN 244
              ++  
Sbjct: 64  VELIKLG 70


>gi|228936636|ref|ZP_04099430.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823071|gb|EEM68909.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 189

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   + ++E  K    +     +    F              + Y         +   
Sbjct: 46  MPIQSGLDVAETLKKEKSV--CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAS 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R I +D ++ +                 W +   L+ RE E L    EGKT+
Sbjct: 104 IRNVMKGKREISQDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTA 146

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 147 NEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|56962819|ref|YP_174545.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909057|dbj|BAD63584.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 210

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 12/164 (7%)

Query: 87  VRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   ++  +    +++R      +    F      I         Y     D+      
Sbjct: 54  VRMPVMTGIEATKRLIERDPNVKIVMLTTFIDERYAIEALKAGAKGYILKDADMES---- 109

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGK 201
              LF      L   L   G +AA        +     K+    L  RE E +  + +G+
Sbjct: 110 ---LFATIEKALLGELVLDGQVAAKVMPKLLQHSAPQEKEQIPPLAEREKEIIRLVGQGR 166

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + EIA  L +S  TV NYI+ +  K   + R+    +AV+++I
Sbjct: 167 NNAEIAAELYLSVGTVKNYISQLFIKLGVRDRTQLAIFAVKHDI 210


>gi|193068201|ref|ZP_03049165.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019]
 gi|192958480|gb|EDV88919.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019]
          Length = 215

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 95  VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 200 SRVAATILFLQQR 212


>gi|289642550|ref|ZP_06474693.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507638|gb|EFD28594.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 389

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRI----ILRDRLWEIGLLAAYQANMFKSYDVH 179
             +     +  F  AR+    +   P   +       +    + L     A+  +  D  
Sbjct: 265 LALQRERIAKAFCTARMMTEGLSAAPVRLVRQSTPAAESKPPVSLPGMLAASAPRLPD-- 322

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE E L  ++ G T+ +IA  L +S  TV +++  I+RK     R+ AIA 
Sbjct: 323 -----GLTPREREVLALLASGATNAQIADRLTVSETTVKSHVKHILRKLHASNRAEAIAR 377


>gi|119714205|ref|YP_919347.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526114|gb|ABL79484.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 216

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    ++ G ++ EI   L IS +T   ++ASI++K   + R  A+  A  + +
Sbjct: 152 LTNREREVWELVARGLSNAEITERLVISEHTTKTHVASILQKLHVRGRVQAVVLAYESGL 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|330719950|gb|EGG98410.1| hypothetical protein imdm_44 [gamma proteobacterium IMCC2047]
          Length = 224

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 10/192 (5%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           AL +    ++F L          L     SD+   LV  + +   D +  + +   +   
Sbjct: 19  ALADAFEGANFSLAHDPREVFDLLGR--KSDYDLALV-DLKMPGMDSFEFLERLCQQFKS 75

Query: 111 PVFHTLPENITP------PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
                +     P       A     +   +     +   + L+      +    L     
Sbjct: 76  LKVAVISGLDDPETIKKAIALGAVGFIPKSVSEDTLINAVRLVLRGDTYLPPHLLKVAIE 135

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
               +  +    D+    D  LT R+ E L  + EG+++ +IA  L +S NT+  +++ +
Sbjct: 136 PDPDEGALEIPVDLKRAYDV-LTERQKEILLLLGEGRSNKDIARRLDLSENTIKVHVSGV 194

Query: 225 MRKTATKTRSGA 236
           +R      R+ A
Sbjct: 195 LRALNLNNRTQA 206


>gi|326330415|ref|ZP_08196723.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951690|gb|EGD43722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 362

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 32/71 (45%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  G    LT RE +    +  G T+ EIA  L +S  TV +++  I+RK     R
Sbjct: 285 PRQPAARGAMSGLTAREQDVFALLVSGATNPEIADRLTVSETTVKSHVKHILRKLRVSNR 344

Query: 234 SGAIAYAVRNN 244
           + AIA  VR  
Sbjct: 345 AEAIAKYVRGG 355


>gi|229145112|ref|ZP_04273504.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|228638310|gb|EEK94748.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
          Length = 304

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L    F              + Y   + D   +   + L++  G +I  D L+     
Sbjct: 166 RVLILSTFQNTERAKEIIRNGADGYVLKSIDSRELAESIRLVYRGGAMITHD-LFHRMWE 224

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +  +F+S     G ++ L+ RE+E L  +S+G     IA  L +S  TV NY +++ 
Sbjct: 225 ENKETGLFESRSD--GIEYGLSKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLY 282

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   K R  A+  A    ++
Sbjct: 283 EKLGVKNREEAVQKAKDIGLL 303


>gi|171316398|ref|ZP_02905617.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098431|gb|EDT43234.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 515

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 122 PPAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
            P  +  + C L    D++  +   M L       ++D  W    L    AN+ ++    
Sbjct: 364 EPVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPD 423

Query: 180 WGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI 
Sbjct: 424 AGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIV 483

Query: 239 YAVRNNIV 246
           +A    IV
Sbjct: 484 WARERGIV 491


>gi|300918841|ref|ZP_07135409.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 115-1]
 gi|300414022|gb|EFJ97332.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 115-1]
          Length = 225

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 152 --EMFGAKEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 210 SRVAATILFLQQR 222


>gi|298249263|ref|ZP_06973067.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547267|gb|EFH81134.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 889

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 16/173 (9%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSL 133
           L + + L+E++     + +   L   VF                  +  P G    +   
Sbjct: 721 LAQMLTLAEEEGRMRAVIKTKVLQALVFQAKGATERAMSTIIQALVLAEPEGYVFTFTEE 780

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             ++AR+   +      G + LR     +  L    A    S   H      L+ RE E 
Sbjct: 781 GAEMARLLKAVHAAQRTGSLALRLAPEYLQRLLDACAERRTSSSSH----ILLSEREREI 836

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  ++ G ++ EIA  L I+ +TV  ++  I  K    +R+ AIA A   N++
Sbjct: 837 VRLLASGLSNQEIADHLVIAMSTVKWHVRQIFNKLGVNSRTQAIAQARELNVL 889


>gi|297538580|ref|YP_003674349.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257927|gb|ADI29772.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 212

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 13/132 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
              L          D     L  ++ +   G+ +L      IL++ L    L        
Sbjct: 94  LEALRAGADGYLLKDMEPEDLCDNLKKAMSGVTVLHESLTEILKNALISPSL-------- 145

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                    ++  LT RE E L  ++ G  +  IA  LGIS  TV  +I  ++ K    +
Sbjct: 146 -----SRSEEEVSLTEREREILECLANGLNNKTIARSLGISDTTVKVHIKHLLSKLKLTS 200

Query: 233 RSGAIAYAVRNN 244
           R  A  +A R  
Sbjct: 201 RLEAAVWAHRKK 212


>gi|227503398|ref|ZP_03933447.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227075901|gb|EEI13864.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 253

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  ++ G ++ EI+    +S  TV  ++  ++ KT ++ R  A+ YA  + 
Sbjct: 181 ELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLYAYTHG 240

Query: 245 IV 246
           +V
Sbjct: 241 VV 242


>gi|229821513|ref|YP_002883039.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567426|gb|ACQ81277.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 232

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 10/144 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y + +     +   ++ +     +           L
Sbjct: 96  RFLALSVSDAAEDVVAVIRAGARGYVTKSITGTDLSDAVVRVAGGDAVFSP-------RL 148

Query: 166 AAYQANMFKSY--DVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           A +  + F +   DV  G +  +LT RE E +  I+ G T  E+A  L IS  TV  +++
Sbjct: 149 AGFVLDAFGAIGGDVATGDELDKLTAREREVMRLIARGYTYREVASELFISIKTVETHVS 208

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK    +R     +A +  ++
Sbjct: 209 AVLRKLQLSSRHELTRWAAQRRLL 232


>gi|15077445|gb|AAK83172.1|AF333038_14 putative two-component regulator [Streptomyces viridochromogenes]
          Length = 206

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++    +S G ++ EIA +LG++  TV  ++A I+ K   ++R  A   A  + +
Sbjct: 127 LSDRELQVFLLLSHGYSNREIAALLGVTERTVKAHMAQILAKLGVESRLQAGLVAFAHGL 186


>gi|332663474|ref|YP_004446262.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332288|gb|AEE49389.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 227

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 78/223 (34%), Gaps = 17/223 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-------LFQEQKLDSIVSSDWPFD 85
           + ++  +D    +   M  L E       +L   D       L Q   L  ++  D    
Sbjct: 1   MIQIALVDDEALFRKGMKLLLEDYEGITVMLEAQDGEHLLQQLRQASTLPDVLLLDMKMP 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  +  ++  +          +    + +    +         Y     +   +   + 
Sbjct: 61  NLNGVDTAKVLQ--EAFPTLKIIVLSTYFSKAFIVNMIELGAGAYLPKNANPDEVVATIR 118

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTS 203
            ++  G    +       +L   + NM +         F  ++T RE E L  I E  T+
Sbjct: 119 EVYSNGFSYNQ------AVLEVIRDNMLQKSKPKMPLSFGVDITSREKEILQLICEEYTT 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV+ +  +++ K + K  +G + YA++  +V
Sbjct: 173 SEIAEKLFISPRTVDGHRNNLLEKLSCKNVAGLVVYAIQYQLV 215


>gi|282860465|ref|ZP_06269531.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282564201|gb|EFB69737.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 251

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 25/217 (11%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            D  A ++          +   LTE + A         L + ++L  +    W    V  
Sbjct: 14  RDAYAHVVVASPAFVLQGQTATLTEALTALTPTTCDLLLIEARELARV---PWAAAQVSL 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              + + +   +   P      +       +  P    + + +    V R   G M++ P
Sbjct: 71  RLAAARTRTAVLGTIPPAGLPLLTEAGVTGVFGPCLEPDAFFTALDAVCR---GAMVIAP 127

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                                +         G    LT RE E L  ++    +  IA+ 
Sbjct: 128 AP-------------------SRTPPAPAAHGSLSPLTQREREVLALVATQPDNTAIALA 168

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LG+S  TV ++I  +MRK A  +R+  +  A  + ++
Sbjct: 169 LGVSPLTVKSHINRVMRKLAVSSRAQLVILAYESRLI 205


>gi|290963094|ref|YP_003494276.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260652620|emb|CBG75753.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 8/177 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNR 129
             V  + P  ++  + + + D    + Q       PV      F      +T        
Sbjct: 36  DTVRREAPDVVLLDIRMPDVDGLTVLAQLCALPDPPVVAMLTTFDADEYILTALRSGAAG 95

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +     +  ++   +  L   G ++       +       A +    D H  +   LT R
Sbjct: 96  FLLKDTEPDQLAQVVRTLAAGGVVMSPKASRAVWQSHPRAATV--DDDEHVARFGLLTER 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  ++EG ++ EI  ++ +S  TV +++++I+ K     R  A   A R  ++
Sbjct: 154 ERQVLVLVAEGLSNAEIGTVVHLSEGTVKDHVSAILGKLGVAGRVRAALLAQRAGLL 210


>gi|300361177|ref|ZP_07057354.1| two component system response regulator [Lactobacillus gasseri
           JV-V03]
 gi|300353796|gb|EFJ69667.1| two component system response regulator [Lactobacillus gasseri
           JV-V03]
          Length = 227

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 69/174 (39%), Gaps = 6/174 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           +  + P  ++  + +   D       V ++  ++   +  T  ++    + +    + Y 
Sbjct: 46  IEKNKPDIILMDVRMPIMDGTVCTKYVKEKYPDIKVIILTTFDDDDFIFSALKYGASGYL 105

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A +   +  +   G +I  D   ++  L +  A    +  V+  +  + +  E 
Sbjct: 106 LKGGSPADLFTSIRTVAQGGAMINPDITEKVFRLFSKMAQSNYAISVNDKETKDFSKSEW 165

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +  +  G ++ EIA  L +S  TV NYI+ I+ K   + R+    +AV+  +
Sbjct: 166 CVIQQVGLGLSNKEIAAKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQTGV 219


>gi|271969439|ref|YP_003343635.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270512614|gb|ACZ90892.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 11/177 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNR 129
               S  P  ++  + +   D      +   E      +    F T            + 
Sbjct: 42  RQARSTEPDVILMDIRMPGMDGIEATRRILAERPATKVVILTTFDTDEHVFAALRAGASG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + +     A +R  + ++     ++       +      Q    +   V       LT R
Sbjct: 102 FLTKEVAPAELRHAVAVVAAGEALLSPSVTRRV-----VQQFAHRPAPVSGDGLAVLTVR 156

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E +  ++EG ++D+IA  L IS  T   ++   + K   + R+  +  A    +V
Sbjct: 157 EREVVRLVAEGLSNDQIAAKLVISPLTAKTHVTRALMKLNARDRAQLVILAYETGLV 213


>gi|187923501|ref|YP_001895143.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714695|gb|ACD15919.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 522

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  IS G ++ E+A IL +S +TV  ++ S+ RK    TR+ A   A     
Sbjct: 462 LSPREAEVLKHISLGASNKEVARILELSPSTVRTHVESVFRKLECSTRAAATLKASALGC 521

Query: 246 V 246
           +
Sbjct: 522 I 522


>gi|150376486|ref|YP_001313082.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150031033|gb|ABR63149.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 219

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             +            ELT RE E L  ++ G ++ +IA  L +   TV +++  IM K  
Sbjct: 138 GQLLNPAPAKSNLVAELTRREQEVLHLVASGMSNKQIARKLDLHEKTVKHHMTQIMAKLN 197

Query: 230 TKTRSGAI 237
              R+ A 
Sbjct: 198 VANRTEAA 205


>gi|289662128|ref|ZP_06483709.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 923

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE+E L  ++ G ++ +IA  L +S NT+  ++ ++ RK   ++R  A+A A++  +
Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTIKFHLKNLYRKLDARSRENALAQALQRGL 908

Query: 246 V 246
           +
Sbjct: 909 L 909


>gi|239627726|ref|ZP_04670757.1| two-component protein Kinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517872|gb|EEQ57738.1| two-component protein Kinase [Clostridiales bacterium 1_7_47FAA]
          Length = 209

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE++ +  +++G  + EIA  L ++  TV N I+ ++ K   K R+    +AV+
Sbjct: 145 DLDLTPREMDIMRLVAQGMDNREIAAGLFLAEGTVRNNISRLLEKLKLKDRTQLAVFAVK 204

Query: 243 NNI 245
           NN+
Sbjct: 205 NNL 207


>gi|269138242|ref|YP_003294942.1| two-component response regulator EsrB, LuxR family [Edwardsiella
           tarda EIB202]
 gi|61743009|gb|AAX55229.1| EsrB [Edwardsiella tarda]
 gi|237861358|gb|ACR24241.1| EsrB [Edwardsiella tarda]
 gi|267983902|gb|ACY83731.1| two-component response regulator EsrB, LuxR family [Edwardsiella
           tarda EIB202]
 gi|304558285|gb|ADM40949.1| EsrB [Edwardsiella tarda FL6-60]
          Length = 214

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 15/169 (8%)

Query: 83  PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDV 137
           P  ++  + L   D       + +R +++   V     E       +     +  L    
Sbjct: 54  PDLVLLDLGLPGMDGVDVIRQLRRRWSDMRIVVVTASSEARRGSEALAAGALAYVLKQSP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +  +  M     G+  +   L    L+A+              ++  LT RE + L  +
Sbjct: 114 QQTLLAAMQHASLGKTFVDPALRLDSLVAS----------SDMAQEPPLTLRERQILKLV 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGK + +IA +L IS  TV  +  ++MRK      +    +A R  ++
Sbjct: 164 AEGKRNRDIAELLSISLKTVETHRLNLMRKLDAHNAAELSNWARRLGVL 212


>gi|146280183|ref|YP_001170340.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558424|gb|ABP73035.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 207

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 9/168 (5%)

Query: 72  QKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           Q+L+ ++  +  FD++   + +         L R  EL       L     PP       
Sbjct: 38  QELEDLLEKEGSFDIILLDLVMPGMKPGLEALTRILELNQNKPVMLISGNAPPG------ 91

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
             +   + R   G +      R ++        G +    +    S       +  L+ +
Sbjct: 92  -VIHEALHRGAAGYVEKSQSARSLVNAINFVLAGEIYVPMSLRLNSVRPSITDEKGLSPK 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E+E L  ++ G  + EIA  LGIS  TV  ++ SI  K   K R+ A 
Sbjct: 151 ELEVLRCLTNGLMNKEIAQTLGISEVTVKMHVRSICAKMNVKNRTQAA 198


>gi|225865300|ref|YP_002750678.1| response regulator [Bacillus cereus 03BB102]
 gi|225788745|gb|ACO28962.1| response regulator [Bacillus cereus 03BB102]
          Length = 597

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 97/253 (38%), Gaps = 11/253 (4%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E  Q  + +    EQ T  V ++P ++  +  +I L       +   +L + +      
Sbjct: 347 LEQVQGTLSVQSNVEQGTLIVCNIPLQTKPVHDIIRLLVVDDQALITNSLEQILENQTDF 406

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119
           +V    +   +   +     P  ++  + + E +    +L+   R   +   +  T  ++
Sbjct: 407 IVAGKAYDGSEALILCEQLEPDIVLMDIQMPEMNGIEALLEMKRRWPNMKIVLMTTFEDS 466

Query: 120 ITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMF 173
           +     ++     Y   +     ++  L L++  G  I +    R++E   L   Q    
Sbjct: 467 LQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIFEEMKLQREQLAKI 526

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS    +   + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R
Sbjct: 527 KSTKQTF--PYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNR 584

Query: 234 SGAIAYAVRNNIV 246
             AI  A   NI+
Sbjct: 585 EEAIKMARTENIL 597


>gi|194289452|ref|YP_002005359.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223287|emb|CAQ69292.1| putative Prolyl aminopeptidase, LuxR DNA binding domain C_term
           [Cupriavidus taiwanensis LMG 19424]
          Length = 366

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L   +A +  +          LT RE + +  I++G+ + +IA  L +   TV N+I SI
Sbjct: 281 LEEVRAFLPSAQPARCPAFTALTRRERDIVELIAQGRDNAQIAAHLDLCEKTVRNHITSI 340

Query: 225 MRKTATKTRSGAIAYAVRNN 244
             K   + R  AI  A +  
Sbjct: 341 FAKLEVENRGQAIVLARKAG 360


>gi|159037739|ref|YP_001536992.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916574|gb|ABV98001.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 240

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 17/169 (10%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-----PPAGMDNRYCSLTFDVARIR 141
           +R   +S  +    + +   EL  PV       IT           N   +     A + 
Sbjct: 56  LRLQDMSGGEFLRRLREGGAELCPPVVVYALGEITDSMVDLVRAGANGVLAEDASKAELL 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTW 196
           I +  +     ++          +A    +  +S D   G  +      LTGRE E L  
Sbjct: 116 IAVRAVASGHAMLGPP-------VARRMLDWLRSSDDPVGVPYPAVANNLTGREREILLL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + G ++DEIA  L IS  TV  ++  +  K   K R+  + +A +  +
Sbjct: 169 TARGLSADEIAGRLFISVATVRTHLYRLRCKLQLKDRAQLVTFAYQTGL 217


>gi|326776946|ref|ZP_08236211.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657279|gb|EGE42125.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 344

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S      + + L+ REVE +  I+ G ++ +IA    IS  TV N+I  I  K  + +RS
Sbjct: 267 STPAPNRQQYRLSSREVEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRS 326

Query: 235 GAIAY 239
            AIA+
Sbjct: 327 EAIAH 331


>gi|255532183|ref|YP_003092555.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255345167|gb|ACU04493.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 151

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S +    +   L  RE E L  +++G ++ EIA  L IS +TV  +++++  K   K+R 
Sbjct: 79  SLNEKELEKLNLNSREYEILQLLAKGHSNAEIAGDLFISLSTVKTHVSNLFVKMNVKSRI 138

Query: 235 GAIAYAVRNNIV 246
            A+  A R  I+
Sbjct: 139 KALEKAKRLKII 150


>gi|269955047|ref|YP_003324836.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303728|gb|ACZ29278.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 230

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 46/116 (39%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L        +  +     G  +L   L    + +  +            +   L+ RE
Sbjct: 102 FMLKSSPRAHLLHAVRTAASGEALLDPSLTRRLVESHVRRPRAVEPGQTPAQLAGLSPRE 161

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  ++ G+++ EIA  L ++  TV  ++A+++RK   + R+ A+       +V
Sbjct: 162 RDVLQALARGESNAEIAGTLFLAETTVKTHVAAVLRKLGLRDRTQAVILGYEIGLV 217


>gi|78063527|ref|YP_373435.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971412|gb|ABB12791.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 514

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           P  +  R C L    D++  +   M L       ++D  W    L    AN+ ++     
Sbjct: 365 PVAIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +
Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484

Query: 240 AVRNNIV 246
           A    IV
Sbjct: 485 ARERGIV 491


>gi|30063633|ref|NP_837804.1| transcriptional regulator NarP [Shigella flexneri 2a str. 2457T]
 gi|56480063|ref|NP_708089.2| transcriptional regulator NarP [Shigella flexneri 2a str. 301]
 gi|110806169|ref|YP_689689.1| transcriptional regulator NarP [Shigella flexneri 5 str. 8401]
 gi|30041886|gb|AAP17613.1| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri
           2a str. 2457T]
 gi|56383614|gb|AAN43796.2| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri
           2a str. 301]
 gi|110615717|gb|ABF04384.1| nitrate/nitrite response regulator [Shigella flexneri 5 str. 8401]
 gi|281601644|gb|ADA74628.1| Nitrate/nitrite response regulator [Shigella flexneri 2002017]
 gi|313651305|gb|EFS15703.1| response regulator [Shigella flexneri 2a str. 2457T]
 gi|332754834|gb|EGJ85199.1| response regulator [Shigella flexneri 4343-70]
 gi|332755237|gb|EGJ85601.1| response regulator [Shigella flexneri K-671]
 gi|332756240|gb|EGJ86591.1| response regulator [Shigella flexneri 2747-71]
 gi|332766006|gb|EGJ96216.1| response regulator [Shigella flexneri 2930-71]
 gi|333001907|gb|EGK21473.1| response regulator [Shigella flexneri K-218]
 gi|333016648|gb|EGK35977.1| response regulator [Shigella flexneri K-304]
          Length = 215

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 95  VFALIDAGADGYLLKDSDPEVLLEAIRTGAKGSKVFSERVNQYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 200 SRVAATILFLQQR 212


>gi|307327124|ref|ZP_07606313.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887205|gb|EFN18202.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 216

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 12/133 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     LT  V     G  ++ P+              L   Q  
Sbjct: 93  VYTALSNGASGFLLKDAGPALLTEAVRAAVRGDAMVAPQI------------TLRLLQHF 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E +  I+ G T+ EIA  L I+ +TV  ++ S+  K   +
Sbjct: 141 TKARRRGASEPAEPLTDREEEVIQGIARGLTNPEIAAELYIAPSTVKTHLGSVQAKLGLR 200

Query: 232 TRSGAIAYAVRNN 244
            R    A+A R+ 
Sbjct: 201 NRVEVAAWAFRSG 213


>gi|293405659|ref|ZP_06649651.1| transcriptional regulator NarP [Escherichia coli FVEC1412]
 gi|298381341|ref|ZP_06990940.1| two-component system [Escherichia coli FVEC1302]
 gi|300819110|ref|ZP_07099312.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 107-1]
 gi|300822646|ref|ZP_07102784.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 119-7]
 gi|300897746|ref|ZP_07116140.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 198-1]
 gi|300902154|ref|ZP_07120155.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 84-1]
 gi|300926301|ref|ZP_07142103.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 182-1]
 gi|300930429|ref|ZP_07145837.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 187-1]
 gi|300935141|ref|ZP_07150171.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 21-1]
 gi|300950044|ref|ZP_07163991.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 116-1]
 gi|300956848|ref|ZP_07169109.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 175-1]
 gi|301022495|ref|ZP_07186371.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 69-1]
 gi|301307196|ref|ZP_07213220.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 124-1]
 gi|301647050|ref|ZP_07246881.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 146-1]
 gi|309793076|ref|ZP_07687504.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 145-7]
 gi|331642822|ref|ZP_08343957.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H736]
 gi|331673712|ref|ZP_08374475.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA280]
 gi|331678147|ref|ZP_08378822.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H591]
 gi|332278650|ref|ZP_08391063.1| transcriptional regulator NarP [Shigella sp. D9]
 gi|291427867|gb|EFF00894.1| transcriptional regulator NarP [Escherichia coli FVEC1412]
 gi|298278783|gb|EFI20297.1| two-component system [Escherichia coli FVEC1302]
 gi|300316358|gb|EFJ66142.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 175-1]
 gi|300358520|gb|EFJ74390.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 198-1]
 gi|300397493|gb|EFJ81031.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 69-1]
 gi|300405747|gb|EFJ89285.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 84-1]
 gi|300417670|gb|EFK00981.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 182-1]
 gi|300450534|gb|EFK14154.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 116-1]
 gi|300459636|gb|EFK23129.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 21-1]
 gi|300461682|gb|EFK25175.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 187-1]
 gi|300524846|gb|EFK45915.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 119-7]
 gi|300528263|gb|EFK49325.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 107-1]
 gi|300837606|gb|EFK65366.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 124-1]
 gi|301074782|gb|EFK89588.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 146-1]
 gi|308123362|gb|EFO60624.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 145-7]
 gi|315252918|gb|EFU32886.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 85-1]
 gi|324020961|gb|EGB90180.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 117-3]
 gi|331039620|gb|EGI11840.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H736]
 gi|331068985|gb|EGI40377.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA280]
 gi|331074607|gb|EGI45927.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H591]
 gi|332101002|gb|EGJ04348.1| transcriptional regulator NarP [Shigella sp. D9]
          Length = 225

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 152 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 210 SRVAATILFLQQR 222


>gi|271967312|ref|YP_003341508.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510487|gb|ACZ88765.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            F +L    +           L         G   L+P              L+  Y   
Sbjct: 94  FFESLKAGASGYVLKSVADRDLLEACRAAMRGEPFLYPGAI---------TALIRDYLQR 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +   V    +  LT RE E +  I+EG ++ EIA  L IS  TV+ + A+I++K   +
Sbjct: 145 VRQGERV---PESILTPREEEVVKLIAEGNSAKEIAETLVISVKTVDRHRANILQKLGMR 201

Query: 232 TRSGAIAYAVRNNIV 246
            R     YA+R  +V
Sbjct: 202 DRLDLTRYAIRAGLV 216


>gi|255534826|ref|YP_003095197.1| LuxR family transcriptional regulator protein [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341022|gb|ACU07135.1| LuxR family transcriptional regulator protein [Flavobacteriaceae
           bacterium 3519-10]
          Length = 280

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 42/79 (53%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +Q +  KS +V  G   +LT RE E L+ I+ G +  EIA  + +S +TV ++  +I+ K
Sbjct: 202 HQMHYNKSPNVIGGDFVKLTQRETEILSLIARGYSGSEIAKNICVSEHTVKSHRRNIIAK 261

Query: 228 TATKTRSGAIAYAVRNNIV 246
              +     I+ A+   ++
Sbjct: 262 MRVRNTKELISKAIEMAVI 280


>gi|213967183|ref|ZP_03395332.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301381082|ref|ZP_07229500.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060741|ref|ZP_07252282.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302133226|ref|ZP_07259216.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928025|gb|EEB61571.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 910

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    +
Sbjct: 849 LSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 908

Query: 246 V 246
           +
Sbjct: 909 L 909


>gi|330809600|ref|YP_004354062.1| two-component Response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377708|gb|AEA69058.1| Putative two-component Response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 210

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 8/171 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V    P  L+  ++L + +          EL   +    P        M + Y  ++ 
Sbjct: 46  EMVGRSQPDLLLMDISLKDMNG--------LELTRLLGKQYPSLKILILSMYDNYEYVSE 97

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            V     G +L     R I+      I     Y A + +    +   D ELT RE + L 
Sbjct: 98  SVRSGASGYVLKNAPSREIIAAIEAIISGGTFYSAEIAQRLATNPNTDSELTPRESQVLA 157

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +G  + E+A  L IS  TV  +  SI RK      +  + YA+ + I+
Sbjct: 158 KMVQGLNNKEMARELDISVRTVETHRLSIRRKLNIDKPAALVKYAIDHGII 208


>gi|238059115|ref|ZP_04603824.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237880926|gb|EEP69754.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 220

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +     +   +  G+ ++     ++         L++   A            
Sbjct: 96  IRAGASGFLLKDAEPVDLIRGVRVVAAGDALLAPSVTRR--LISEVAARRTPPPAPDLA- 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT REVE +  +++G +++EIA  L IS  T   +++ I+ K   + R+  + +A  
Sbjct: 153 --SLTNREVEIMDLVAQGLSNEEIAGRLEISHATTKTHVSRILTKLGLRDRAQLVVWAYE 210

Query: 243 NN 244
           + 
Sbjct: 211 SG 212


>gi|226308488|ref|YP_002768448.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226187605|dbj|BAH35709.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 292

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A+   S +        L+ RE E + +++ G  + EIA  L +S  T+  Y+ ++M K  
Sbjct: 215 ASPNPSANTPVANTVVLSPREREVMGYVALGLRNAEIAERLSLSVETIKTYMRNLMGKLD 274

Query: 230 TKTRSGAIAYAVRNNIV 246
            ++R  A+  A R  ++
Sbjct: 275 VRSRHEAVVEARRQGLI 291


>gi|46203993|ref|ZP_00050651.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 214

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 9/187 (4%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPEN 119
           +V   +  +   D I +   P  ++  + +   D             E    V  T   +
Sbjct: 26  VVGEPVDGDHARDVIEACR-PDVVLMDLRMPRCDGLVATARETALRPETAIIVLTTFDTD 84

Query: 120 ITPPAGMDNRYCSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                 +    C           +   +        ++    L  +  LAA   N     
Sbjct: 85  HHVVRALRAGACGFLLKDAPPDELAHAVRAAAQGRPVLAPAVLRRVMTLAA--ENTRPPD 142

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G    L+ RE E    ++ G ++ EI   L IS  TV  +++ ++ K   ++R+  
Sbjct: 143 AAAVGALATLSPREREIARALARGMSNAEICAALFISLATVKTHVSRVIAKLGVESRTQV 202

Query: 237 IAYAVRN 243
            A  +RN
Sbjct: 203 AALVLRN 209


>gi|331018080|gb|EGH98136.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 910

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    +
Sbjct: 849 LSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 908

Query: 246 V 246
           +
Sbjct: 909 L 909


>gi|312195087|ref|YP_004015148.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226423|gb|ADP79278.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 257

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +       R   L   V R   G+ +                GL A    +
Sbjct: 123 VLAAVKSGASGYLVKSARPEELVDAVRRTADGVPVFG-------------AGLAALVLGD 169

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           + ++           LT RE+E L  +++G ++ + A  LG+S  TV N++ +++ K   
Sbjct: 170 LSRAARRPAEPGTPSLTAREIEVLRLVAKGLSAKDAAARLGVSPRTVQNHVHNVLSKLRL 229

Query: 231 KTRSGAIAYAVRNN 244
           + R     +AVR  
Sbjct: 230 RNRVELTRFAVRAG 243


>gi|240142442|ref|YP_002966952.1| hypothetical protein MexAM1_META2p0768 [Methylobacterium extorquens
           AM1]
 gi|240012386|gb|ACS43611.1| Hypothetical protein MexAM1_META2p0768 [Methylobacterium extorquens
           AM1]
          Length = 266

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 14/228 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS------DWP 83
            DL  ++              +L E  GA+ + L       E      V +      D P
Sbjct: 41  DDLARQLDAAADRDRAHRAFGSLAEVSGAARWALAEMRRGGEGGFVFDVLASSSAGGDAP 100

Query: 84  FDLV----RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
              V        L+   +  + ++ RP+     +   L   +   A        +     
Sbjct: 101 IRTVGPCAEDRVLARTWRARDAIELRPSSAGASIAAGLEALLGAVADAAIAVLPIDSPDP 160

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
             R+  +    +G  I   R     L  A+ A + K  ++      +L+ RE+E L   +
Sbjct: 161 SRRVLGVAAAGEGADIRVLR-RGFALYGAFFARLRKEANLPT--RVDLSRREIEVLQRCA 217

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G  +D IA  L +S +TV  +I     K   +  S A+A A+R  ++
Sbjct: 218 HGLKTDAIAAELEVSAHTVREHIDRARLKLDARNLSHAVALAMRAGLI 265


>gi|156976379|ref|YP_001447285.1| protein-glutamate methylesterase [Vibrio harveyi ATCC BAA-1116]
 gi|156527973|gb|ABU73058.1| hypothetical protein VIBHAR_05152 [Vibrio harveyi ATCC BAA-1116]
          Length = 222

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGK 201
           +  L      +L+  +W     +       + +     K     LT RE + +T++S G 
Sbjct: 113 ISTLQAGIGKVLQGDMWFSRKFSQQYITHLRRHSRPLNKTVPAILTKREQQIITFLSMGA 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A  N
Sbjct: 173 SNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214


>gi|28868366|ref|NP_790985.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851603|gb|AAO54680.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 910

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    +
Sbjct: 849 LSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 908

Query: 246 V 246
           +
Sbjct: 909 L 909


>gi|311898486|dbj|BAJ30894.1| putative LuxR family transcriptional regulator [Kitasatospora setae
            KM-6054]
          Length = 1030

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 51/155 (32%)

Query: 91   ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             L+          R T L       LP  +T          +   D       L      
Sbjct: 866  ELARAAGRPTAAHRRTALAELRTTALPGPLTRALLRTAEDAAAGGDREEAAALLREAAEL 925

Query: 151  GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                          L A +  +         +   LT RE + L  ++ G+++ +IA  L
Sbjct: 926  ADRGGDLTTRRDAALLAERLGLGARKGAPAEEGLGLTPRERDVLRQLARGRSNRQIAEQL 985

Query: 211  GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IS  T + ++++I+ K A   R  A A A R  +
Sbjct: 986  FISPKTASVHVSNILAKLAVGGRGEAAALAHRLRL 1020


>gi|256786258|ref|ZP_05524689.1| response regulatory protein [Streptomyces lividans TK24]
 gi|289770149|ref|ZP_06529527.1| response regulatory protein [Streptomyces lividans TK24]
 gi|289700348|gb|EFD67777.1| response regulatory protein [Streptomyces lividans TK24]
          Length = 223

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G  + EIA  L IS  TV  ++  I  K    TR+GA+A A    +
Sbjct: 162 LTDRERDILAQLATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRL 221

Query: 246 V 246
           +
Sbjct: 222 L 222


>gi|308050904|ref|YP_003914470.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307633094|gb|ADN77396.1| transcriptional regulator, LuxR family [Ferrimonas balearica DSM
           9799]
          Length = 225

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKG-RIILRDRLW--------EIGLLAAYQANMFKSYDVH 179
            + +L F    +R   + + P+  R +L D+LW         +  L     +   S +V 
Sbjct: 91  GFIALGFSGLIVRDYTLEMLPRAIRALLADQLWFSREAMSSSLKQLVNVGGHCGHSVNV- 149

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            G  ++L+ +E +   ++ +GK++ EIA+ + IS +TV N++++I++KT  ++R   
Sbjct: 150 LGAQYQLSAKEQQVFHYLLQGKSNKEIALGMNISLSTVKNHVSNILQKTHKQSRHQL 206


>gi|307330023|ref|ZP_07609174.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306884284|gb|EFN15319.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 216

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 11/169 (6%)

Query: 83  PFDLVRCMAL---SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFD 136
           P  +V  + L   S  +    +L    E+   V     ++ +  A +      Y      
Sbjct: 50  PDLVVMDLGLPGRSGLEATRRILCDHPEIRVLVMTMSEDDDSLLAAVRAGARGYLLKGAG 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   L  +   G +        +G L     +              LT RE E L  
Sbjct: 110 RDEILRALHTVARGGAVFSPRMAERLGALVGASGSA-----SAKEAFPTLTAREREVLDL 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ G    +IA  L ++  TV N++ SI  K   + R+ AI  A +  +
Sbjct: 165 LAAGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRARQAGL 213


>gi|269219143|ref|ZP_06162997.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211290|gb|EEZ77630.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 235

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 12/170 (7%)

Query: 83  PFDLVRCMALSEKDK-YYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  LV  + +   D    +   +        L    F      ++        Y      
Sbjct: 70  PDILVTDIRMPLMDGITASEQVKALYPDTKILLLTTFDDDEAMLSGLQAGAGAYLLKNTS 129

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   +  +   G ++        G  +    N         G + + + RE++ L  
Sbjct: 130 PEDIVKSIREVSSGGTVVSP------GPTSRLVKNYLVPLPPDSGVNVQFSKREMDVLRL 183

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +  ++ EIA  L +  +TV  +I+SIM K    +R   +  A    +V
Sbjct: 184 LCQAHSNSEIAAQLYVQESTVKTHISSIMAKLEVNSRLKVVVRAYELGLV 233


>gi|320007550|gb|ADW02400.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 227

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 6/172 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  +        L R   +    +                +     
Sbjct: 49  DVVLMDVQMPVMTGIDATRAIAADPALARVHVVILTNYGLDEYVFDALRAGAAGFLLKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
           + A +   + +      ++         L+ A+ +   +  D       E LT RE E  
Sbjct: 109 EPAELLRAVEVAAGGEALLSPAVTRR--LIGAFVS---RPPDRATAPGLETLTRREREAT 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              + G T+DEIAV + +S  T   +I+  M K   + R+  + +A  + +V
Sbjct: 164 ALAARGLTNDEIAVHMVVSPLTAKTHISRAMTKLRARDRAQLVVFAYESGLV 215


>gi|163755753|ref|ZP_02162871.1| phosphoglyceromutase [Kordia algicida OT-1]
 gi|161324274|gb|EDP95605.1| phosphoglyceromutase [Kordia algicida OT-1]
          Length = 225

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I   KT+ EI   L I+  TV  + +++  KT  +  +G + YA++NN 
Sbjct: 157 LTEREIEVLKLICFQKTAKEIGEQLFITPRTVEGHKSNLFIKTEARNIAGLVIYAIQNNY 216

Query: 246 V 246
           +
Sbjct: 217 I 217


>gi|74312714|ref|YP_311133.1| transcriptional regulator NarP [Shigella sonnei Ss046]
 gi|82776204|ref|YP_402553.1| transcriptional regulator NarP [Shigella dysenteriae Sd197]
 gi|157156289|ref|YP_001463544.1| transcriptional regulator NarP [Escherichia coli E24377A]
 gi|157161674|ref|YP_001458992.1| transcriptional regulator NarP [Escherichia coli HS]
 gi|170019493|ref|YP_001724447.1| transcriptional regulator NarP [Escherichia coli ATCC 8739]
 gi|170679777|ref|YP_001744386.1| transcriptional regulator NarP [Escherichia coli SMS-3-5]
 gi|187730582|ref|YP_001879462.1| transcriptional regulator NarP [Shigella boydii CDC 3083-94]
 gi|188495436|ref|ZP_03002706.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638]
 gi|191165388|ref|ZP_03027230.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A]
 gi|193062271|ref|ZP_03043366.1| nitrate/nitrite response regulator NarP [Escherichia coli E22]
 gi|194427123|ref|ZP_03059674.1| nitrate/nitrite response regulator NarP [Escherichia coli B171]
 gi|194436209|ref|ZP_03068311.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1]
 gi|209919652|ref|YP_002293736.1| transcriptional regulator NarP [Escherichia coli SE11]
 gi|218554761|ref|YP_002387674.1| transcriptional regulator NarP [Escherichia coli IAI1]
 gi|218695805|ref|YP_002403472.1| transcriptional regulator NarP [Escherichia coli 55989]
 gi|218700662|ref|YP_002408291.1| transcriptional regulator NarP [Escherichia coli IAI39]
 gi|218705722|ref|YP_002413241.1| transcriptional regulator NarP [Escherichia coli UMN026]
 gi|253772883|ref|YP_003035714.1| transcriptional regulator NarP [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162205|ref|YP_003045313.1| transcriptional regulator NarP [Escherichia coli B str. REL606]
 gi|256017639|ref|ZP_05431504.1| transcriptional regulator NarP [Shigella sp. D9]
 gi|256022125|ref|ZP_05435990.1| transcriptional regulator NarP [Escherichia sp. 4_1_40B]
 gi|260844795|ref|YP_003222573.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O103:H2 str.
           12009]
 gi|260856180|ref|YP_003230071.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O26:H11 str.
           11368]
 gi|260868909|ref|YP_003235311.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O111:H- str.
           11128]
 gi|297520422|ref|ZP_06938808.1| transcriptional regulator NarP [Escherichia coli OP50]
 gi|301024278|ref|ZP_07187969.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 196-1]
 gi|307138849|ref|ZP_07498205.1| transcriptional regulator NarP [Escherichia coli H736]
 gi|307311230|ref|ZP_07590874.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|309786632|ref|ZP_07681253.1| response regulator [Shigella dysenteriae 1617]
 gi|312973555|ref|ZP_07787727.1| response regulator [Escherichia coli 1827-70]
 gi|331663697|ref|ZP_08364607.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA143]
 gi|331668898|ref|ZP_08369746.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA271]
 gi|331683869|ref|ZP_08384465.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H299]
 gi|73856191|gb|AAZ88898.1| nitrate/nitrite response regulator [Shigella sonnei Ss046]
 gi|81240352|gb|ABB61062.1| nitrate/nitrite response regulator [Shigella dysenteriae Sd197]
 gi|157067354|gb|ABV06609.1| nitrate/nitrite response regulator NarP [Escherichia coli HS]
 gi|157078319|gb|ABV18027.1| nitrate/nitrite response regulator NarP [Escherichia coli E24377A]
 gi|169754421|gb|ACA77120.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|170517495|gb|ACB15673.1| nitrate/nitrite response regulator NarP [Escherichia coli SMS-3-5]
 gi|187427574|gb|ACD06848.1| nitrate/nitrite response regulator NarP [Shigella boydii CDC
           3083-94]
 gi|188490635|gb|EDU65738.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638]
 gi|190904551|gb|EDV64258.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A]
 gi|192931937|gb|EDV84536.1| nitrate/nitrite response regulator NarP [Escherichia coli E22]
 gi|194414744|gb|EDX31015.1| nitrate/nitrite response regulator NarP [Escherichia coli B171]
 gi|194424937|gb|EDX40922.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1]
 gi|209912911|dbj|BAG77985.1| nitrate/nitrite response regulator [Escherichia coli SE11]
 gi|218352537|emb|CAU98316.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli 55989]
 gi|218361529|emb|CAQ99120.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli IAI1]
 gi|218370648|emb|CAR18457.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli IAI39]
 gi|218432819|emb|CAR13713.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli UMN026]
 gi|242377829|emb|CAQ32596.1| narP [Escherichia coli BL21(DE3)]
 gi|253323927|gb|ACT28529.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974106|gb|ACT39777.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli B str. REL606]
 gi|253978273|gb|ACT43943.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BL21(DE3)]
 gi|257754829|dbj|BAI26331.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O26:H11 str.
           11368]
 gi|257759942|dbj|BAI31439.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O103:H2 str.
           12009]
 gi|257765265|dbj|BAI36760.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O111:H- str.
           11128]
 gi|284922185|emb|CBG35267.1| nitrate/nitrite response regulator protein [Escherichia coli 042]
 gi|299880482|gb|EFI88693.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 196-1]
 gi|306908736|gb|EFN39233.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|308925541|gb|EFP71027.1| response regulator [Shigella dysenteriae 1617]
 gi|309702505|emb|CBJ01831.1| nitrate/nitrite response regulator protein [Escherichia coli ETEC
           H10407]
 gi|310332150|gb|EFP99385.1| response regulator [Escherichia coli 1827-70]
 gi|315061500|gb|ADT75827.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli W]
 gi|315615453|gb|EFU96085.1| response regulator [Escherichia coli 3431]
 gi|320177206|gb|EFW52214.1| Nitrate/nitrite response regulator protein [Shigella dysenteriae
           CDC 74-1112]
 gi|320199790|gb|EFW74379.1| Nitrate/nitrite response regulator protein [Escherichia coli
           EC4100B]
 gi|323152251|gb|EFZ38541.1| response regulator [Escherichia coli EPECa14]
 gi|323161744|gb|EFZ47626.1| response regulator [Escherichia coli E128010]
 gi|323168652|gb|EFZ54332.1| response regulator [Shigella sonnei 53G]
 gi|323171865|gb|EFZ57509.1| response regulator [Escherichia coli LT-68]
 gi|323184184|gb|EFZ69561.1| response regulator [Escherichia coli 1357]
 gi|323377920|gb|ADX50188.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
 gi|323936807|gb|EGB33092.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940739|gb|EGB36927.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323945009|gb|EGB41074.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323961585|gb|EGB57192.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323972986|gb|EGB68182.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323977610|gb|EGB72696.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324117918|gb|EGC11817.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331059496|gb|EGI31473.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA143]
 gi|331064092|gb|EGI36003.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA271]
 gi|331078821|gb|EGI50023.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H299]
 gi|332343973|gb|AEE57307.1| response regulator protein [Escherichia coli UMNK88]
          Length = 215

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 95  VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 200 SRVAATILFLQQR 212


>gi|306836360|ref|ZP_07469338.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304567720|gb|EFM43307.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 253

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++ L  ++ G ++ EI+    +S  TV  ++  ++ KT ++ R  A+ YA  + 
Sbjct: 181 ELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLYAYTHG 240

Query: 245 IV 246
           +V
Sbjct: 241 VV 242


>gi|227115411|ref|ZP_03829067.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 245

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 30/198 (15%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD--------- 127
           ++ S++P + V     +       V+        P   +  +NI   + +          
Sbjct: 45  VIISNYPQEWVNTYKENNYQHIDPVILTAINKVSPF--SWEDNIVINSKLKFSKIFNLSK 102

Query: 128 -----NRYCSLTFDVARIRIGLMLLFPKG-----RIILRDRLWEIGLL---------AAY 168
                N Y  +  D       L ++F +        I+ +   ++ +L           Y
Sbjct: 103 EYDIVNGYTFVLHDNNNHLAALSIMFEEHAPTDMENIVEENKDKLQMLLIAVHEKITTLY 162

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +     +     G+    + RE E L W S GKT  EIA+IL I  +TV  +I ++++K 
Sbjct: 163 KEMTQSTQSKKQGEKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKL 222

Query: 229 ATKTRSGAIAYAVRNNIV 246
                  AI   V   ++
Sbjct: 223 GVLNAKHAIRLGVELQLI 240


>gi|329957447|ref|ZP_08297922.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
 gi|328522324|gb|EGF49433.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
          Length = 238

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +    +  +   D +L+ RE+E L  I++G  + EIA  L IS  TV  +  +I+ K   
Sbjct: 158 SSMPPHAANGADDHDLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGI 217

Query: 231 KTRSGAIAYAVRNNIV 246
           K+ SG   YAV +  +
Sbjct: 218 KSVSGLTIYAVMHGYI 233


>gi|153802230|ref|ZP_01956816.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|124122254|gb|EAY40997.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
          Length = 214

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  Y+   F+S+        +LT RE++ L  +  G ++ +IA  L IS  T
Sbjct: 129 PRHVSSQLLHYYRY-AFQSHQAQAS--VDLTAREIQILRCLQTGASNMQIAENLFISEFT 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V +++  I +K   K R  AIA+ V  N++
Sbjct: 186 VKSHLYQIFKKLNVKNRVKAIAW-VNQNLL 214


>gi|118476625|ref|YP_893776.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415850|gb|ABK84269.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 219

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 17/215 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  + E   +  F ++      E+ L  I     P  ++  + + +    
Sbjct: 13  VDDHFVVREGLKLIIET--SDSFQIIGEAENGEEALSFIEKKK-PDVILMDLNMPKMSGL 69

Query: 98  -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                L +  +   P+      N     +         Y     D        +    +G
Sbjct: 70  ETIEALNK-KQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 127

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            I+L+  + E   +  Y+     +  V   ++  LT +E+  L  I+ G  + EIA  +G
Sbjct: 128 EILLQPNIMEK--IVNYKRKEVYADKV---EENNLTEKELFVLKAIARGNKNKEIAFDMG 182

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 183 IAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 217


>gi|326332686|ref|ZP_08198949.1| putative transcriptional regulatory protein DegU [Nocardioidaceae
           bacterium Broad-1]
 gi|325949514|gb|EGD41591.1| putative transcriptional regulatory protein DegU [Nocardioidaceae
           bacterium Broad-1]
          Length = 219

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             +   G    LT REVE L  I++G ++ +IA  L +S NT+ ++I    RK    TRS
Sbjct: 120 EREDRLGTVAGLTTREVEVLALITQGLSNADIAEKLVVSVNTLKSHIRQAYRKIEVTTRS 179

Query: 235 GAIAYAVRNN 244
            A+++A+ + 
Sbjct: 180 QAVSWAITHG 189


>gi|318042198|ref|ZP_07974154.1| DNA-binding response regulator [Synechococcus sp. CB0101]
          Length = 236

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 16/236 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
                   H+ + + LL R   L       M +      +G +  L       +   LD 
Sbjct: 5   PLIEQMRGHVTSGNTLLER-HRLVVCFGSPMTLTLFVSALGPAQQL-AGATTSESDALDR 62

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           + S+    DL+ C    E+    ++++   +L  P   TL            R  ++   
Sbjct: 63  LRSTQ--ADLLLCTDRLEQGNGGSLVEAAKQL-QPAPSTL-----LVVTQPRRLITIRRA 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY------DVHWGKDFELTGRE 190
           V     G+ L    G+  +   L  I   AAY     +         +       LT RE
Sbjct: 115 VDAGCDGICLESQIGQGTVAQALETISAGAAYIEKGLQQQYLQGFCGIGDAPLAPLTERE 174

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  I+   T+ EIA  L +S  TV +++A ++ K   ++R  A    +R  +V
Sbjct: 175 LEVLQRIAANATNPEIAADLFLSIETVKSHVAQVLHKLDARSRLQAAIKGIRLGLV 230


>gi|258647693|ref|ZP_05735162.1| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
 gi|260852526|gb|EEX72395.1| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
          Length = 315

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 8/211 (3%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE-K 95
             L+   +    +  L +   A    + R   ++E++L   V++    DL +   +    
Sbjct: 105 AALEAEDNLAKLILKLYDNYSAE---IHRHMKYEEKELFPYVTALLEGDLSKNFDIDTFS 161

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
             +  V ++  EL   +   LP +       +NR  +  +D+      L        +I 
Sbjct: 162 QHHSQVDRKLRELKDIIIKYLPTDDMH----NNRLMATLYDIYNNEEWLRQHSKVEDMIF 217

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
              +  +           K   +   K+ EL+ RE + +  I +G ++ EIA  L IS N
Sbjct: 218 IPAIKFLEKSKRKNVLTEKISSLVSNKEEELSARERDVIISIVQGMSNKEIAEHLCISTN 277

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  +  +I RK    T +G   YA+ N +V
Sbjct: 278 TVITHRRNIARKLQIHTPAGLTIYAIVNGLV 308


>gi|302540779|ref|ZP_07293121.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458397|gb|EFL21490.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 239

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 37/84 (44%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           + + G  A   A +         +   L+ RE E L  I +G T+ +IA  L ++  TV 
Sbjct: 148 MLDPGATARVMARLRGPQPSTPDELERLSPREREILELIGDGLTNRQIAERLFLAEKTVK 207

Query: 219 NYIASIMRKTATKTRSGAIAYAVR 242
           N I+SI+ K     R  A   A R
Sbjct: 208 NRISSILSKLGVGRRIQAAVIAER 231


>gi|229199478|ref|ZP_04326139.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228583883|gb|EEK42040.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 189

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   + ++E  K  N       +    F              + Y         +   
Sbjct: 46  MPIQSGLDVAETLKKENSA--CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAS 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R I +D ++ +                 W +   L+ RE E L    EGKT+
Sbjct: 104 IRNVMKGKREISQDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTA 146

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 147 NEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|288574154|ref|ZP_06392511.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569895|gb|EFC91452.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 214

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 46/105 (43%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                L    R ++   ++    ++   A ++ S          LT RE E L  ++EG 
Sbjct: 106 CASTELVEAVRKVMDGEIYLGPSISHIVAKLYVSSLHDPDDIEPLTPREKEILMLLAEGN 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ E+A  L +S  TV  +   IM K   K  +  + YA+RN ++
Sbjct: 166 TNREVAERLHLSIKTVGTHRQHIMNKLKLKNLADLVKYAIRNGMI 210


>gi|290454885|emb|CBI67623.1| sR protein [Pseudomonas fuscovaginae]
          Length = 237

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L W + GKT  E  +IL I   TV  ++ + MRK  +  +  A   A    +
Sbjct: 176 LTVREVETLKWSATGKTYTETGLILSIDERTVKFHLVNAMRKLHSSNKVEAAMKAYALGM 235

Query: 246 V 246
           +
Sbjct: 236 L 236


>gi|289680012|ref|ZP_06500902.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 73

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R 
Sbjct: 8   VQLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 67

Query: 244 NIV 246
            ++
Sbjct: 68  GVI 70


>gi|196040971|ref|ZP_03108268.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196028139|gb|EDX66749.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 71

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 5   WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 64

Query: 240 AVRNNIV 246
           A     +
Sbjct: 65  AEEKGWI 71


>gi|294010919|ref|YP_003544379.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292674249|dbj|BAI95767.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 296

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           V   + F LT RE E L WIS GK++ + + IL IS  TVN ++  I  K   + R
Sbjct: 223 VDLQEAFGLTRREAEVLLWISRGKSNRDASEILNISARTVNKHLEQIFVKMGVENR 278


>gi|289627087|ref|ZP_06460041.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646654|ref|ZP_06477997.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330869632|gb|EGH04341.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330888707|gb|EGH21368.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 209

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D+  G    LT R+ E L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS 
Sbjct: 137 SDLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRSA 196

Query: 236 AIA 238
           A A
Sbjct: 197 AAA 199


>gi|284046774|ref|YP_003397114.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950995|gb|ADB53739.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 992

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 F LT RE + LT ++ G T+ EI   L ++  T + +++ I+ K   ++R+ A 
Sbjct: 922 PAEADPFGLTPRERQVLTLVASGATNREIGSALFMAEKTASVHVSRILAKLDVRSRTQAA 981

Query: 238 AYAVRNNI 245
           A A R  +
Sbjct: 982 AVAHRLGL 989


>gi|32170705|dbj|BAC78370.1| putative two-component system response regulator [Streptomyces sp.
           WA46]
          Length = 222

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 3/162 (1%)

Query: 87  VRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   +   +    ++    R   L    F              + +         +  G
Sbjct: 55  VRMPGMDGIEATRRIVAAGGRSRILVLTTFDLDEYVHAAIRAGASGFLLKDARPEELLAG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I       +    A      ++      +   LT RE E L  I +G T+
Sbjct: 115 IRAVAVGDAVIAPALTRRLLDEFAQYVPSHRTEPSEDPRLTALTDREREILVAIGKGWTN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA    +S +TV  ++  ++ K   + R  A+ +A  + +
Sbjct: 175 GEIAARFVLSESTVKTHVGRVLTKIGARDRIQAVIFAYDHGL 216


>gi|119714221|ref|YP_919363.1| LuxR family transcriptional regulator [Nocardioides sp. JS614]
 gi|119526130|gb|ABL79500.1| transcriptional regulator, LuxR family [Nocardioides sp. JS614]
          Length = 545

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 40/59 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + LT +++G ++ EIA  L +SR TV ++++SI+ K A ++R+ A A+A R  
Sbjct: 486 LTRREHDVLTLLADGLSNPEIAQRLYLSRKTVAHHVSSILTKLALRSRAEAAAFATRTR 544


>gi|317404677|gb|EFV85070.1| hypothetical protein HMPREF0005_04072 [Achromobacter xylosoxidans
           C54]
          Length = 515

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDVHW 180
           G + R   +  D++  +     L      +++D  W     I  LA  +A    S DV  
Sbjct: 378 GGERRVLLVMQDISERKRSETELLAAIEAVMQDTSWFSRGIIEKLAQLRAPAPASRDV-- 435

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE E L  + +G   D IA  L +SRNTV N++A+I  K     RS AI +A
Sbjct: 436 ADLAQLTAREREVLGLLCQGHDDDGIARQLRLSRNTVRNHVATIYSKIGVHRRSAAIVWA 495

Query: 241 VRNNI 245
               I
Sbjct: 496 RDRGI 500


>gi|313203941|ref|YP_004042598.1| transcriptional regulator [Paludibacter propionicigenes WB4]
 gi|312443257|gb|ADQ79613.1| transcriptional regulator [Paludibacter propionicigenes WB4]
          Length = 201

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    +   L+ RE E +  + +G T+ EIA  L +S +TV ++  +I RK    + +G 
Sbjct: 124 DQALDEQNTLSAREKEIIICVVKGLTNKEIAQTLFLSTHTVISHRRNITRKLEIHSTAGL 183

Query: 237 IAYAVRNNIV 246
             YA+ N ++
Sbjct: 184 TVYAIMNKLI 193


>gi|254688650|ref|ZP_05151904.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 6
           str. 870]
 gi|256256897|ref|ZP_05462433.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 9
           str. C68]
 gi|260754126|ref|ZP_05866474.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260883151|ref|ZP_05894765.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297247749|ref|ZP_06931467.1| two-component system, NarL family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|260674234|gb|EEX61055.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872679|gb|EEX79748.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297174918|gb|EFH34265.1| two-component system, NarL family, response regulator [Brucella
           abortus bv. 5 str. B3196]
          Length = 213

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +    +   L+ RE + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G 
Sbjct: 140 ESGEKRSEGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGL 199

Query: 237 IAYAVRNNI 245
             YA+ N +
Sbjct: 200 TRYAIENRL 208


>gi|153831737|ref|ZP_01984404.1| probable csgAB operon transcriptional regulatory protein [Vibrio
           harveyi HY01]
 gi|148872247|gb|EDL71064.1| probable csgAB operon transcriptional regulatory protein [Vibrio
           harveyi HY01]
          Length = 222

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGK 201
           +  L      +L+  +W     +       + +     K     LT RE + +T++S G 
Sbjct: 113 ISTLQAGIGKVLQGDMWFSRKFSQQYITHLRRHSRPLNKTVPAILTKREQQIITFLSMGA 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A  N
Sbjct: 173 SNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214


>gi|134096209|ref|YP_001101284.1| response regulatory protein [Herminiimonas arsenicoxydans]
 gi|133740112|emb|CAL63163.1| Response regulatory protein [Herminiimonas arsenicoxydans]
          Length = 238

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 4/135 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++    +     D     +   +  +  G   + P     +  R+ +          
Sbjct: 99  VVDSIEAGASGYVLKDAGPLDIGRALMELHAGGSPISPVIARKVLARMRD----GNKADG 154

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++ +   G+   LT RE   L  I+ G +  E+A  L +S  TV  +I +I  K +  
Sbjct: 155 AVRAENAPGGQKVFLTRREATILDLIARGDSYCEVARELALSVGTVQTHIKNIYDKLSVH 214

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A+  A R  ++
Sbjct: 215 SRGAAVYEAHRRGLL 229


>gi|330873242|gb|EGH07391.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 910

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    +
Sbjct: 849 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 908

Query: 246 V 246
           +
Sbjct: 909 L 909


>gi|301328679|ref|ZP_07221739.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 78-1]
 gi|300844929|gb|EFK72689.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 78-1]
          Length = 216

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 152 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209

Query: 232 TRSGAIA 238
           +R  A  
Sbjct: 210 SRVAATI 216


>gi|296270643|ref|YP_003653275.1| LuxR family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296093430|gb|ADG89382.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM
           43833]
          Length = 74

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE E +  I+ G ++ EIA  L +S  TV N++  I  K   ++R+ AI
Sbjct: 11  LSKRETEVMELIASGHSNGEIARRLFLSEKTVKNHVNRIYAKLGVRSRTSAI 62


>gi|159899994|ref|YP_001546241.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893033|gb|ABX06113.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 877

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE+E L  ++ G ++ EIA  L I+  TV  ++ +++ K   ++R+ A+A A  
Sbjct: 813 NEPLSEREIEVLKLLALGHSNAEIAERLVIAIGTVKRHVNNLLGKLNARSRTEAVAIARD 872

Query: 243 NNIV 246
             ++
Sbjct: 873 EGLL 876


>gi|82701299|ref|YP_410865.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82409364|gb|ABB73473.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 79

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W+ +GKT+ EI  IL IS  TV N++  I +K     R+ A + 
Sbjct: 3   WVGKGKTNAEIGSILSISEFTVRNHLYHIFQKLGVYNRTQAASK 46


>gi|302538423|ref|ZP_07290765.1| response regulator [Streptomyces sp. C]
 gi|302447318|gb|EFL19134.1| response regulator [Streptomyces sp. C]
          Length = 223

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I+ G  +  IA  L +S  TV N+I  +  K    +R+ A+A A    +
Sbjct: 159 LTSREVEVLELIARGHDNRRIARELVLSEKTVRNHITHVFEKLQVTSRAEAVARARDAGL 218


>gi|293410555|ref|ZP_06654131.1| transcriptional regulator NarP [Escherichia coli B354]
 gi|293446543|ref|ZP_06662965.1| two-component system [Escherichia coli B088]
 gi|291323373|gb|EFE62801.1| two-component system [Escherichia coli B088]
 gi|291471023|gb|EFF13507.1| transcriptional regulator NarP [Escherichia coli B354]
          Length = 236

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 116 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 162

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 163 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 220

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 221 SRVAATILFLQQR 233


>gi|300023398|ref|YP_003756009.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525219|gb|ADJ23688.1| transcriptional regulator, LuxR family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 241

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              +L+D + +   L +  A   +SY+ H   D  L+ R+ E L  ++ GK++ EI+  L
Sbjct: 142 NPALLQDTISK--ALVSQFAEPQRSYEAHPDID-SLSPRQREVLLLVAVGKSNLEISEEL 198

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             S NTV  ++ ++++K     R+ A   A + N++
Sbjct: 199 SCSLNTVKRHVTAVLQKLHLPNRTRAANLANQLNLL 234


>gi|212690554|ref|ZP_03298682.1| hypothetical protein BACDOR_00039 [Bacteroides dorei DSM 17855]
 gi|212666903|gb|EEB27475.1| hypothetical protein BACDOR_00039 [Bacteroides dorei DSM 17855]
          Length = 231

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 13/202 (6%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL--QRP 105
            M A+   VG   F +++ +   +++L  ++       +V    L +    Y ++  +R 
Sbjct: 33  GMKAVAGRVG--GFTVIK-EAGSQKELTRLLIDHPNAVVVLDYTLFDTSAEYLLILQERF 89

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            E     F    ++++        +   +F V      ++ +       LR     +  +
Sbjct: 90  KEAH---FILFSDSLSEDFIRRMVFGGTSFSVVMKDAPMIEIEEG----LRKAEQRLQYI 142

Query: 166 AAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
               A  +    +    +   LT  E E L  ++ GKT+ EIA    +S  TV  +  +I
Sbjct: 143 CTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVMTHRKNI 202

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK        A  YA+R  IV
Sbjct: 203 FRKLEVNNVYEATKYALRAGIV 224


>gi|198276688|ref|ZP_03209219.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135]
 gi|198270213|gb|EDY94483.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135]
          Length = 195

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSDEIA 207
             ++ +++L +  +    + +    + V       + EL+ RE+E L  +++G  + EIA
Sbjct: 92  NILLPQEQLVKTIMQTRKRGHELTHHPVTPPATDAEHELSAREIEVLRLVTKGLINKEIA 151

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  TV ++  +I  K   K+ SG   YAV +  +
Sbjct: 152 DKLHISLTTVISHRKNITEKLGIKSVSGLAIYAVMHGYI 190


>gi|405947|gb|AAA16411.1| narP [Escherichia coli]
          Length = 225

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 152 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 210 SRVAATILFLQQR 222


>gi|52142219|ref|YP_084610.1| response regulator [Bacillus cereus E33L]
 gi|51975688|gb|AAU17238.1| response regulator [Bacillus cereus E33L]
          Length = 597

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 97/253 (38%), Gaps = 11/253 (4%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E  Q  + +    EQ T  V ++P ++  +  +I L       +   +L + +      
Sbjct: 347 LEQVQGTLSVQSNVEQGTLIVCNIPLQTKPVHDIIRLLVVDDQALITNSLEQILENQTDF 406

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119
           +V    +   +   +     P  ++  + + E +    +L+   R   +   +  T  ++
Sbjct: 407 IVAGKAYDGSEALILCEQLEPDIVLMDIQMPEMNGIEALLEMKRRWPNMKIVLMTTFEDS 466

Query: 120 ITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMF 173
           +     ++     Y   +     ++  L L++  G  I +    R++E   L   Q    
Sbjct: 467 LQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIFEEMKLQREQLAKI 526

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS    +   + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R
Sbjct: 527 KSTKQTF--PYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNR 584

Query: 234 SGAIAYAVRNNIV 246
             AI  A   NI+
Sbjct: 585 EEAIKMARTENIL 597


>gi|111220014|ref|YP_710808.1| putative protein-glutamate methylesterase [Frankia alni ACN14a]
 gi|111147546|emb|CAJ59199.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a]
          Length = 211

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D R   L   +  +  G  LL P              L+A +   
Sbjct: 74  VFAALRGGASGFVLKDTRPEDLLAAIRIVAAGDALLTPS---------VTRRLIAEFAQR 124

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 V   +   LT RE E L  ++ G ++ EIA  L +   TV  +++ ++ K   +
Sbjct: 125 --PQRPVRGEELTRLTEREREVLVQVAAGLSNSEIARRLFVGVTTVKTHVSRLLTKLGAR 182

Query: 232 TRSGAIAYAVRNNI 245
            R+  +  A  + +
Sbjct: 183 DRAQLVVAAYESGV 196


>gi|313499425|gb|ADR60791.1| Putative metal dependent phosphohydrolase [Pseudomonas putida
           BIRD-1]
          Length = 479

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 148 FPKGRIILRDR---LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
               R++ +D    L++  +  A  A       +   K   LT RE   L  IS G ++ 
Sbjct: 377 SEAARLLKQDASRGLFDAEICTAVIAAARGERRLPQPKSTLLTTRECSILMEISRGASNK 436

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A  L IS +TV  ++ SI RK    TR+ A    +   ++
Sbjct: 437 EVARRLEISPSTVRTHMESIFRKLGCSTRAAATLKGLTLGLI 478


>gi|85858979|ref|YP_461181.1| two-component response regulator [Syntrophus aciditrophicus SB]
 gi|85722070|gb|ABC77013.1| two-component response regulator [Syntrophus aciditrophicus SB]
          Length = 217

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 12/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D  +  L   +  +      L P    I+           +   +
Sbjct: 91  VIGMLEAGASGYLLKDCAFEELVNAIQTVLSNHTYLSPTIADIVVKNYVHKAAGTSVVVS 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        ELT RE E L  ++EG ++ +IA  L +S  TV  +  +I +K    
Sbjct: 151 S------------ELTPRERELLQLLAEGLSAKQIAANLHVSVKTVETHRRNITQKLGVG 198

Query: 232 TRSGAIAYAVRNNI 245
           + +  I YA+R  +
Sbjct: 199 SVAELIKYAIREGL 212


>gi|241258818|ref|YP_002978702.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863288|gb|ACS60951.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 275

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 69/199 (34%), Gaps = 21/199 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           +Y     +   R D  Q+  L +     W +D          D    + +  TE   PV 
Sbjct: 79  DYWFNRGYF--RIDPVQQVALRTSAPFFWNYD---------PDADTLINRFMTEDTAPVT 127

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAA-YQ 169
             L E              +            + F + +   R  L  I    LLA  + 
Sbjct: 128 RYLSERDM----STGVTVPVHMPRGDYATVTGIRFGRNKDFERHALRYIADFNLLAHVFH 183

Query: 170 ANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              +  +D          LT RE ECL   +EG ++ EI+ I+  S  TV  ++ +  +K
Sbjct: 184 ETAYSLFDTRAKSVGTIRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAATKK 243

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+ A+  A    ++
Sbjct: 244 LGARNRTQAVVRATHYRLL 262


>gi|116249629|ref|YP_765467.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254277|emb|CAK03896.1| putative LuxR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 270

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 69/199 (34%), Gaps = 21/199 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           +Y     +   R D  Q+  L +     W +D          D    + +  TE   PV 
Sbjct: 74  DYWFNRGYF--RIDPVQQVALRTSAPFFWNYD---------PDADTLINRFMTEDTAPVT 122

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAA-YQ 169
             L E              +            + F + +   R  L  I    LLA  + 
Sbjct: 123 RYLSERDM----STGVTVPVHMPRGDYATVTGIRFGRNKDFERHALRYIADFNLLAHVFH 178

Query: 170 ANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              +  +D          LT RE ECL   +EG ++ EI+ I+  S  TV  ++ +  +K
Sbjct: 179 ETAYSLFDTRAKSVGTIRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAATKK 238

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+ A+  A    ++
Sbjct: 239 LGARNRTQAVVRATHYRLL 257


>gi|21240910|ref|NP_640492.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106187|gb|AAM35028.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 210

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 70/216 (32%), Gaps = 12/216 (5%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ---EQKLDSIVSSDWPFDLVRCM 90
            R+   D  +     + AL +  G    ++   D  Q   +      V        +  +
Sbjct: 4   RRIALADDQILVRAGLRALLQQQGVE--VVCEADDGQGLLDALAIHTVDVVLSDIRMPGL 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
              +  ++       T +         + +   +    +   L           +     
Sbjct: 62  DGIQALEHLRARGDRTPVLLLTTFDDSDLLLRASEAGAQGFLLKDAAPEDLREAIERVAA 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  +L+        ++         +          + REV  L  ++ G ++ EIA  L
Sbjct: 122 GDTLLQP-------VSTDPVRARYQFRDQQAPRETFSEREVAILRLLAGGYSNKEIARTL 174

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  TV NY+++I+ K   + R+ A+  A+   ++
Sbjct: 175 FLAEGTVKNYVSTILEKLGIRDRTRAVLKAITLRVI 210


>gi|306431674|emb|CBM41479.1| N-acyl homoserine lactone sensor/regulator [Erwinia toletana]
          Length = 245

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           K +++L +   +I  L  Y+  +    +    K    + RE E L W S GKT  EIAVI
Sbjct: 146 KIQMLLIEAHEKITSL--YKNIIESEKNKAINKKDIFSQRENEILYWASIGKTYPEIAVI 203

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LGI  +TV  +I ++++K        AI   V   ++
Sbjct: 204 LGIKISTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 240


>gi|256390216|ref|YP_003111780.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356442|gb|ACU69939.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 203

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +S G+++ EI   L +S +TV  +   + +K     R+ A+A   R  +
Sbjct: 142 LTAREIQVLEGMSHGRSNAEIGRDLFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGL 201

Query: 246 V 246
           V
Sbjct: 202 V 202


>gi|56964425|ref|YP_176156.1| transcriptional regulator of spore coat protein [Bacillus clausii
           KSM-K16]
 gi|56910668|dbj|BAD65195.1| transcriptional regulator of spore coat protein [Bacillus clausii
           KSM-K16]
          Length = 74

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 35/67 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +G    LT RE E    + + +T+ EIA  L IS  TV N+I++ M+K   K RS A+
Sbjct: 4   ADFGPKPLLTKREREVFELLVQDQTTKEIANHLFISEKTVRNHISNTMQKLGVKGRSQAV 63

Query: 238 AYAVRNN 244
              +R  
Sbjct: 64  IELIRLG 70


>gi|21222669|ref|NP_628448.1| response regulatory protein [Streptomyces coelicolor A3(2)]
 gi|8248775|emb|CAB93036.1| putative respose regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 223

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G  + EIA  L IS  TV  ++  I  K    TR+GA+A A    +
Sbjct: 162 LTDRERDILAQLATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRL 221

Query: 246 V 246
           +
Sbjct: 222 L 222


>gi|19551845|ref|NP_599847.1| two-component system response regulator [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389503|ref|YP_224905.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323377|dbj|BAB98005.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324837|emb|CAF19319.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 230

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 48/156 (30%), Gaps = 29/156 (18%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
            L   V     + I    G    Y + +     +   +  +                 LA
Sbjct: 76  FLALSVSDAAEDVIAIIRGGARGYVTKSISGEELIEAINRVKSGDAFFSP-------RLA 128

Query: 167 AYQANMFKSYDVHWGKDF----------------------ELTGREVECLTWISEGKTSD 204
            +  + F + D   G                          LT RE+E L  ++ G T  
Sbjct: 129 GFVLDAFAAPDSAAGAGIVDAPEKDAAVESGKILDDPVVDALTRRELEVLRLLARGYTYK 188

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EI   L IS  TV  + ++I+RKT    R     +A
Sbjct: 189 EIGKELFISVKTVETHASNILRKTQQSNRHALTRWA 224


>gi|119715235|ref|YP_922200.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119535896|gb|ABL80513.1| two component transcriptional regulator, LuxR family [Nocardioides
           sp. JS614]
          Length = 218

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           +   G   +    R+     + +  + A     +     +    + +LT +E   L  I 
Sbjct: 112 KQVKGTDFVETVRRVAAGQSMLDPAVTAHVLDRLRAGPRMDPSIE-QLTAQEQRILELIG 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +G T+ +IA  L ++  TV NY++S++ K   ++R+ A  +A ++
Sbjct: 171 QGMTNRQIAAHLCLAEKTVKNYVSSMLAKLGLESRTQAAIFATKH 215


>gi|116670592|ref|YP_831525.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116610701|gb|ABK03425.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24]
          Length = 547

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ ++A  L IS  TV  ++A+I  K    TR+ A  +A  + +
Sbjct: 487 LTARECEVLALITTGASNRQVADALVISEKTVGRHLANIFGKIGVSTRTAAAGWARDHGL 546


>gi|327405789|ref|YP_004346627.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Fluviicola taffensis DSM 16823]
 gi|327321297|gb|AEA45789.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Fluviicola taffensis DSM 16823]
          Length = 186

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  ++ RE+E L  I++G ++ EIA  L +S NT+  + + +  K     R+ A+  A 
Sbjct: 120 EELGISKRELEVLELIAQGFSNHEIAERLFVSLNTIKTHSSKLFEKLEVNRRTQAVEVAK 179

Query: 242 RNNIV 246
           R  I+
Sbjct: 180 RLGII 184


>gi|258653054|ref|YP_003202210.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258556279|gb|ACV79221.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 905

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTG E   +  ++ GK + +IA +LGISR TV +++++  RK    +R      A+R+ I
Sbjct: 844 LTGTERRVVGLVASGKANSDIAALLGISRRTVESHVSAAYRKLGVNSRVAMARIALRHGI 903


>gi|258650664|ref|YP_003199820.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553889|gb|ACV76831.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 191

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 41/84 (48%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L A     + +S +        LT RE E +  I+EG +S EIA  L IS  TV+ + A
Sbjct: 106 ALTALITEYLRRSRNGDRIPTSILTPREEEIVKLIAEGHSSREIADTLVISAKTVDRHRA 165

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +IM+K     R     +A+R  +V
Sbjct: 166 NIMQKLGMHDRLDLTRFAIRVGLV 189


>gi|229094465|ref|ZP_04225535.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228688929|gb|EEL42758.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 189

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 19/163 (11%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   + ++E  K          +    F              + Y         +   
Sbjct: 46  MPIQSGLDVAEMLKKEKSA--CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAS 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R I +D ++ +                 W +   L+ RE E L    EGKT+
Sbjct: 104 IRNVMKGKREISQDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTA 146

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 147 SEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|170721339|ref|YP_001749027.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759342|gb|ACA72658.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 491

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELT 187
           Y  +  D+   +   + L      +++D  W    L    AN  +            +LT
Sbjct: 371 YLLVLMDITERKRSELELVEAIETVMQDASWFSQTLIEKLANAKRINTGRLPDASFTDLT 430

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A    +
Sbjct: 431 RRERDVLALICEGLADKEIATRLNLALNTVRNHVATVYSKLDVHSRSEAIVWARERRL 488


>gi|88706477|ref|ZP_01104181.1| two component system response regulator [Congregibacter litoralis
           KT71]
 gi|88699189|gb|EAQ96304.1| two component system response regulator [Congregibacter litoralis
           KT71]
          Length = 225

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 3/122 (2%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +         +   +  +     ++  D       L    A           + 
Sbjct: 97  RAGASGFLLKDIPPEELVAAVRTVADGRALLGPDITRR---LIEQFARQGGGSSALAERL 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LTGRE E L  + +G  + EIA  LGI   TV  +++S++ K   + R+ A+ +A  +
Sbjct: 154 ERLTGREQEALRCVGDGMNNQEIARHLGIGPATVKTHVSSLLSKLGLRDRAQAVVFAYES 213

Query: 244 NI 245
            +
Sbjct: 214 GL 215


>gi|209518938|ref|ZP_03267749.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. H160]
 gi|209500661|gb|EEA00706.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. H160]
          Length = 913

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A YQ       D        L+ RE E +  I++G+++ EIA  LGI+  TV +++ SI 
Sbjct: 833 ALYQPASHTQRDADREA---LSARESEIVGLIAQGQSNKEIARSLGIAPETVKSHVKSIF 889

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R+ A++ A    ++
Sbjct: 890 LKLEVDKRAHAVSRAQALGLL 910


>gi|149376825|ref|ZP_01894582.1| putative transcriptional regulator [Marinobacter algicola DG893]
 gi|149358946|gb|EDM47413.1| putative transcriptional regulator [Marinobacter algicola DG893]
          Length = 898

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ++ RE   L  I++G ++ +IA  L IS +TV  +   I  K   K+R+ AI  A    
Sbjct: 837 PISDREQGVLELIAQGLSNQDIADRLHISLHTVKTHARRINAKLEVKSRTQAIVRARELG 896

Query: 245 IV 246
           ++
Sbjct: 897 LL 898


>gi|306832945|ref|ZP_07466077.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|325977686|ref|YP_004287402.1| nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|304424844|gb|EFM27978.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|325177614|emb|CBZ47658.1| Nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 198

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +    +D  L+ +E   L  IS GKT+ EIA  L +S  TV NYI+S
Sbjct: 116 VLAGKKEYSPELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISS 175

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K +   R  A   A  + 
Sbjct: 176 ILNKLSANNRVEAARIAEEHG 196


>gi|239927189|ref|ZP_04684142.1| LuxR family two-component response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291435532|ref|ZP_06574922.1| luxR family two-component response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291338427|gb|EFE65383.1| luxR family two-component response regulator [Streptomyces
           ghanaensis ATCC 14672]
          Length = 230

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 11/122 (9%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             +       R   L   V  +  G  LL P              L+A  +    K  + 
Sbjct: 108 GASGYVLKQIRGSDLVAAVRTVARGQSLLDPSA---------TTKLMARLRGGQQKEEEP 158

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT RE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A  
Sbjct: 159 DALP--GLTDREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAV 216

Query: 239 YA 240
            A
Sbjct: 217 IA 218


>gi|239636020|ref|ZP_04677034.1| transcriptional regulatory protein DegU [Staphylococcus warneri
           L37603]
 gi|239598291|gb|EEQ80774.1| transcriptional regulatory protein DegU [Staphylococcus warneri
           L37603]
          Length = 224

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          +     L   +  +  G   +         D      L+  +  + 
Sbjct: 92  FHVLRNGAKGYILKNAPDEQLLLAIRTVYNGETYV---------DMKLTTSLVNEFVNSS 142

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            + Y         L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K+
Sbjct: 143 NQEYTDTSDPFKVLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLELKS 202

Query: 233 RSGAIAYAVRNNIV 246
           +   + YA++  ++
Sbjct: 203 KPELVEYAMKKKLL 216


>gi|223934982|ref|ZP_03626901.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896435|gb|EEF62877.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 213

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE E L W+++GK++ +IA ILG+S  TV  ++A I      ++R+ A+  A+ 
Sbjct: 148 NLGLSRREAEVLLWVAQGKSNGDIADILGLSEFTVKRHMAGIFDTLGVQSRNAAMLRALE 207


>gi|182413500|ref|YP_001818566.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840714|gb|ACB74966.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 220

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 3/177 (1%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++   ++V  D    ++  +  + +    N   R   L    F    E     A     Y
Sbjct: 46  QRLAPAVVLMDLRMPVMNGVEATRRLMAGNFAGRILVLTT--FEEDEEVFAALAAGAAGY 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGR 189
                   ++   + L       +      + +   +       +           L+ R
Sbjct: 104 LLKASPSDKLIAAIRLTARGESFLEPSVTAKVLAHFSRLAQQAPRPPKPPPPLAEPLSVR 163

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++EG+++ EIA  L I+  TV N++++++ K     R+ A        +V
Sbjct: 164 EREVLGLLAEGRSNKEIASALAIAEGTVKNHMSNVLGKLGALDRTQAALRGRELGLV 220


>gi|26248576|ref|NP_754616.1| transcriptional regulator NarP [Escherichia coli CFT073]
 gi|91211483|ref|YP_541469.1| transcriptional regulator NarP [Escherichia coli UTI89]
 gi|117624388|ref|YP_853301.1| transcriptional regulator NarP [Escherichia coli APEC O1]
 gi|227887250|ref|ZP_04005055.1| transcriptional regulator NarP [Escherichia coli 83972]
 gi|237704666|ref|ZP_04535147.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA]
 gi|300981378|ref|ZP_07175493.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 200-1]
 gi|300982960|ref|ZP_07176392.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 45-1]
 gi|301048933|ref|ZP_07195926.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 185-1]
 gi|331647847|ref|ZP_08348939.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M605]
 gi|26108981|gb|AAN81184.1|AE016763_143 Nitrate/nitrite response regulator protein narP [Escherichia coli
           CFT073]
 gi|91073057|gb|ABE07938.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           UTI89]
 gi|115513512|gb|ABJ01587.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           APEC O1]
 gi|222033954|emb|CAP76695.1| Nitrate/nitrite response regulator protein narP [Escherichia coli
           LF82]
 gi|226901032|gb|EEH87291.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA]
 gi|227835600|gb|EEJ46066.1| transcriptional regulator NarP [Escherichia coli 83972]
 gi|300299309|gb|EFJ55694.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 185-1]
 gi|300307590|gb|EFJ62110.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 200-1]
 gi|300408653|gb|EFJ92191.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 45-1]
 gi|315285806|gb|EFU45246.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 110-3]
 gi|315298006|gb|EFU57275.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 16-3]
 gi|324013986|gb|EGB83205.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 60-1]
 gi|331043571|gb|EGI15709.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M605]
          Length = 225

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 152 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 210 SRVAATILFLQQR 222


>gi|16265098|ref|NP_437890.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|307309480|ref|ZP_07589136.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|307320609|ref|ZP_07600023.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|15141237|emb|CAC49750.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|306893759|gb|EFN24531.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306900065|gb|EFN30685.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 219

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 12/131 (9%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           E    V   L E             +L   +  +  G   + P              LL 
Sbjct: 87  EANDDVAAALKEGAKGYILKGIGARALAEVIRTVASGESYVAPT---------LSAKLLT 137

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
              AN   S         ELT RE E L  ++ G ++ +IA  L +   TV +++  IM 
Sbjct: 138 GQLAN---SAPAKSNLVAELTRREQEVLHLVASGMSNKQIARKLDLHEKTVKHHMTQIMA 194

Query: 227 KTATKTRSGAI 237
           K     R+ A 
Sbjct: 195 KLDVANRTEAA 205


>gi|317124112|ref|YP_004098224.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588200|gb|ADU47497.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 244

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y + T     +   +  +   G  +   RL    +L
Sbjct: 107 RFLALSVSDAAEDVIAVIRAGARGYVTKTISAGDLLTAIGRVA-DGDAVFSPRLAGF-VL 164

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ A   +  ++    D  L+ RE E +  I+ G    E+A  L IS  TV  +++S++
Sbjct: 165 DAFGAAAGEVAEIDEELD-RLSAREREVMRLIARGYQYKEVAKELFISIKTVETHVSSVL 223

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    +R    A+A+   ++
Sbjct: 224 RKLQLSSRHELTAWAMGRRLL 244


>gi|299069373|emb|CBJ40639.1| Nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           CMR15]
          Length = 221

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 52/141 (36%), Gaps = 5/141 (3%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   V     E           Y     +   +  G+        +I         L+A 
Sbjct: 80  VMLTVSEEADELKAALRDGARGYLVKNIEADTLVAGVRRAAAGEPVISES--MTAKLVAH 137

Query: 168 YQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ++A    +             LT RE + +  ++ G+++ EIA  L ++ +TV  ++ +I
Sbjct: 138 FRAPEKAAPAAPAAASVSADRLTPRERDIVRGLARGESNKEIARALDVAESTVKIHVQNI 197

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           ++K    +R     YAV + +
Sbjct: 198 LKKLNLTSRVQVAVYAVEHGL 218


>gi|257067250|ref|YP_003153505.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256558068|gb|ACU83915.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 213

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 20/135 (14%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   L    T     D+   +L   V     G  +L P+ +  L  R+            
Sbjct: 98  IVGALEAGATGYVLKDSPTEALIAAVGEAAAGRSVLSPEVQQRLVARMTSPA-------- 149

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         L+ RE E L  ++ G T+ E+A  L IS +TV  ++  +  K    
Sbjct: 150 ------------TALSPREAEILEALATGATNREVAKRLFISESTVKTHLVHLYEKLGVD 197

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ A+  A    ++
Sbjct: 198 SRTAALRVARERRLI 212


>gi|134026355|dbj|BAF49408.1| response regulator [Streptomyces halstedii]
          Length = 217

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 5/169 (2%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDV 137
           P  ++  + +   D      Q    +  ++       L E +          +     D 
Sbjct: 49  PDLVLMDIQMPRLDGVSATGQVVSGQLADVLVLTTFDLDEYVFGALRAGAAGFLLKDTDA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     +I       +    A  A +  +          LT RE E L  +
Sbjct: 109 HDLIEAVRTVARGEGLIAPAVTRRLIAEFAGTAPVRPARTPDPSVLDALTRREREVLGCL 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EG ++ EIAV L ++  TV  +++ ++ K   ++R  A   A    ++
Sbjct: 169 GEGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGVL 217


>gi|82544573|ref|YP_408520.1| transcriptional regulator NarP [Shigella boydii Sb227]
 gi|81245984|gb|ABB66692.1| nitrate/nitrite response regulator [Shigella boydii Sb227]
 gi|320185869|gb|EFW60619.1| Nitrate/nitrite response regulator protein [Shigella flexneri CDC
           796-83]
 gi|332093584|gb|EGI98642.1| response regulator [Shigella boydii 3594-74]
          Length = 215

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 95  VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 200 SRVAATILFLQQR 212


>gi|304404077|ref|ZP_07385739.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304347055|gb|EFM12887.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 220

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 6/155 (3%)

Query: 94  EKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           E  +   +++RP  +     F              N Y       +RI  G+  +     
Sbjct: 64  EGTRLLKLMERPPAVLVLTTFDDDEYIAAAIRNGANGYMLKNVSPSRIVSGIKTIHEGTL 123

Query: 153 IILRDRLWEI-GLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWISEGKTSDEIA 207
           +I  D   ++ G++    +           K     F LT  E   +  I++G ++ EIA
Sbjct: 124 LIHPDVARKLAGMIGNGASRPAPEAQAVEPKRELAPFGLTAAEQSIVRHIADGLSNKEIA 183

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             L +S  TV NYI+ I+ K   + R+    + ++
Sbjct: 184 ASLFLSEGTVKNYISDILNKLELRDRTQIAIFYLK 218


>gi|167629282|ref|YP_001679781.1| two-component transcriptional response regulator, putative
           [Heliobacterium modesticaldum Ice1]
 gi|167592022|gb|ABZ83770.1| two-component transcriptional response regulator, putative
           [Heliobacterium modesticaldum Ice1]
          Length = 464

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 76/239 (31%), Gaps = 22/239 (9%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           NF  ++    +    EQR S + H+    +++ R         +      +         
Sbjct: 233 NFHRKRQADFIRAIKEQRYSLLYHIDRLEEIVHRGGVTYGGGEFFESENIIVPSADFVEH 292

Query: 62  LLVRWDLFQEQKLDSI--VSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLP 117
           L+   DL +   L  +  V  +     ++     L E D+      R          +  
Sbjct: 293 LIYISDLLEMNPLLEVSLVCRENTALKMKDYGYILKEGDQVILTPGRRQRSTSVYVASDE 352

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             +     + ++Y   +                      DR  +   L   QA      D
Sbjct: 353 PTVMRAVSLCHQYLQQSVSPE------------------DRDVKTMALIFRQAATTAPLD 394

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   LT RE E    I+EG TS EIA    IS NTV ++I +I RK    T+   
Sbjct: 395 PSSCFYGLLTEREYEIALMIAEGLTSREIAEKTFISLNTVKSHIKNIYRKIGVSTKVEL 453


>gi|16130130|ref|NP_416697.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109009|ref|AP_002789.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           W3110]
 gi|170081813|ref|YP_001731133.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238901367|ref|YP_002927163.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BW2952]
 gi|400374|sp|P31802|NARP_ECOLI RecName: Full=Nitrate/nitrite response regulator protein narP
 gi|304917|gb|AAA24200.1| nitrate/nitrite response regulator [Escherichia coli]
 gi|1788521|gb|AAC75253.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675300|dbj|BAE76656.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K12 substr.
           W3110]
 gi|169889648|gb|ACB03355.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860866|gb|ACR62864.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BW2952]
 gi|260448714|gb|ACX39136.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|315136825|dbj|BAJ43984.1| transcriptional regulator NarP [Escherichia coli DH1]
          Length = 215

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 95  VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 200 SRVAATILFLQQR 212


>gi|85711048|ref|ZP_01042108.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           baltica OS145]
 gi|85694961|gb|EAQ32899.1| Response regulator, LuxR family  (CheY, HTH domains) [Idiomarina
           baltica OS145]
          Length = 207

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 70/174 (40%), Gaps = 13/174 (7%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           +     V+ ++       +   E +  +  ++ P E   P    L         +     
Sbjct: 31  EADSFTVAENY-------LKADEFNIIFVEMELPDEEIRPALQRLKRLAPSAHLVLFTKA 83

Query: 132 SLTFDVARIRI-GLMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDFE 185
               DV ++   G+    PK     + ++   GLL   +      N+ +  +   G +  
Sbjct: 84  KAVGDVRQVMAAGVRSYLPKDASAEQAKMAIRGLLNGDRYLPDDPNLNEPRNKSSGAESF 143

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ R++E +  +++G ++ EIA ILGI+  T+  ++++I +      R+ A  +
Sbjct: 144 LSPRQLEIMQLLAQGLSNKEIANILGITEGTIRVHLSAIFKAIKVSNRTEATLW 197


>gi|84684966|ref|ZP_01012866.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667301|gb|EAQ13771.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 253

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 64/192 (33%), Gaps = 17/192 (8%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
                 E     H  L RW    E          W     R   L+EK+       R   
Sbjct: 38  YFRQFIEERMFLHAPLTRWARENESGY-----CSWGALWTRPEDLTEKELEVIAFNRAMN 92

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +      T    +  P   D  +       A       L       I  +   EI +L  
Sbjct: 93  V------TAGYTVAVPTASDRSHALFALTGAHGLTQQDL-----DEIWAENGKEIDVLCN 141

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                  S  +   +  +L+ R++E L W+SEGK++ ++A I+ +S  T+  ++     K
Sbjct: 142 IVHLKIASLPIETNRP-KLSKRQLEVLEWVSEGKSNQDVATIMDVSVPTIEKHLRLAREK 200

Query: 228 TATKTRSGAIAY 239
               T + AIA 
Sbjct: 201 LGVDTTAQAIAK 212


>gi|110642402|ref|YP_670132.1| transcriptional regulator NarP [Escherichia coli 536]
 gi|191170199|ref|ZP_03031753.1| nitrate/nitrite response regulator NarP [Escherichia coli F11]
 gi|215487411|ref|YP_002329842.1| transcriptional regulator NarP [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559110|ref|YP_002392023.1| transcriptional regulator NarP [Escherichia coli S88]
 gi|218690355|ref|YP_002398567.1| transcriptional regulator NarP [Escherichia coli ED1a]
 gi|306814694|ref|ZP_07448856.1| transcriptional regulator NarP [Escherichia coli NC101]
 gi|312967493|ref|ZP_07781708.1| response regulator [Escherichia coli 2362-75]
 gi|331658272|ref|ZP_08359234.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA206]
 gi|110343994|gb|ABG70231.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           536]
 gi|190909715|gb|EDV69300.1| nitrate/nitrite response regulator NarP [Escherichia coli F11]
 gi|215265483|emb|CAS09885.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218365879|emb|CAR03621.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli S88]
 gi|218427919|emb|CAR08839.2| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli ED1a]
 gi|281179284|dbj|BAI55614.1| nitrate/nitrite response regulator [Escherichia coli SE15]
 gi|294492603|gb|ADE91359.1| DNA-binding response regulator, LuxR family [Escherichia coli
           IHE3034]
 gi|305852088|gb|EFM52540.1| transcriptional regulator NarP [Escherichia coli NC101]
 gi|307554259|gb|ADN47034.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           ABU 83972]
 gi|307626269|gb|ADN70573.1| transcriptional regulator NarP [Escherichia coli UM146]
 gi|312287690|gb|EFR15595.1| response regulator [Escherichia coli 2362-75]
 gi|312946814|gb|ADR27641.1| transcriptional regulator NarP [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320196066|gb|EFW70690.1| Nitrate/nitrite response regulator protein [Escherichia coli
           WV_060327]
 gi|323188081|gb|EFZ73376.1| response regulator [Escherichia coli RN587/1]
 gi|323951986|gb|EGB47860.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323955960|gb|EGB51713.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|330912024|gb|EGH40534.1| nitrate/nitrite response regulator protein [Escherichia coli AA86]
 gi|331056520|gb|EGI28529.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA206]
          Length = 215

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 95  VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 200 SRVAATILFLQQR 212


>gi|302206769|gb|ADL11111.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis C231]
 gi|308277014|gb|ADO26913.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis I19]
          Length = 208

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           L          D     L   +     G +L+ P+   +L DR               +S
Sbjct: 91  LEYGARGYLLKDAGPELLVEAIRSAYRGDVLISPEVLSLLLDR---------------RS 135

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                  D  LT RE+E    I+ G+T+ EIA  L IS +TV  ++A I  +   + R  
Sbjct: 136 KPNTSSSDLPLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNRVE 195

Query: 236 AIAYAVRNN 244
             A   R+ 
Sbjct: 196 IAAALWRSG 204


>gi|262275905|ref|ZP_06053714.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP
           101886]
 gi|262219713|gb|EEY71029.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP
           101886]
          Length = 209

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + L  +++G  + +IA  L IS  TV  ++ ++++K   ++R  A    + +
Sbjct: 148 LTERERQILRLVAKGLRNKQIAETLYISEATVKVHLKNLLKKLGVESRVAATVLYLEH 205


>gi|159898252|ref|YP_001544499.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891291|gb|ABX04371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 870

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L A  Q  +  S  V   +   L+ RE+E L  I+ G ++  IA  L +S  TV  ++ +
Sbjct: 790 LAAFGQMPLMPSAQVALIEP--LSERELEVLGLIAAGLSNQAIADQLYLSLYTVKAHVRN 847

Query: 224 IMRKTATKTRSGAIAYA 240
           I  K +   R+ A+A A
Sbjct: 848 IYGKLSVNNRTLAVAKA 864


>gi|88856002|ref|ZP_01130664.1| two-component response regulator [marine actinobacterium PHSC20C1]
 gi|88814869|gb|EAR24729.1| two-component response regulator [marine actinobacterium PHSC20C1]
          Length = 209

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +       L+ RE + L  ++EG ++  IA  L +S  TV  ++  +  K   K R+ A+
Sbjct: 137 MREPARVALSERETQVLALVAEGNSNRAIAAALFVSEATVKTHLIHVFEKLDVKDRTRAV 196

Query: 238 AYAVRNNIV 246
             A+   ++
Sbjct: 197 TKAMELGLL 205


>gi|293415492|ref|ZP_06658135.1| two-component system [Escherichia coli B185]
 gi|291433140|gb|EFF06119.1| two-component system [Escherichia coli B185]
          Length = 225

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    L +R             
Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLHER------------- 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 152 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 210 SRVAATILFLQQR 222


>gi|269836233|ref|YP_003318461.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785496|gb|ACZ37639.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 223

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 68/186 (36%), Gaps = 11/186 (5%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY------YNVLQRPTELFCPVFHTLPENI 120
           +    Q+   +V++  P  ++  + +   D             R   +   ++      I
Sbjct: 36  EAADGQQAIELVANLDPDVVLMDINMPRMDGIRATEFIVKHYPRTAVVVLTMYQDDEYAI 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   + +    G  I         L+  YQ  + K+     
Sbjct: 96  HAIRAGAKSYLLKNSRSEEVIEAIHVAASGGSTIDPA--LAPALMREYQRLLTKTP---T 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE+  L  ++ G  + +IA  L ++ +TV N ++++ +K   + R+ A+ +A
Sbjct: 151 NTRQQLTQRELTLLRLLANGYNNRQIAEQLQLAESTVKNNLSALFQKIGVRDRTQAVLFA 210

Query: 241 VRNNIV 246
           +   +V
Sbjct: 211 ISQGLV 216


>gi|284992816|ref|YP_003411370.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066061|gb|ADB76999.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 253

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V       L+ RE++ LT +S+GK++ +I   L +S +T+  +   + RK   K R+ A+
Sbjct: 184 VREPAPVSLSMREMQVLTGMSQGKSNAQIGRELYLSEDTIKTHARRLFRKLGAKDRAEAV 243

Query: 238 AYAVRNN 244
           A   R  
Sbjct: 244 ATGFRRG 250


>gi|182440060|ref|YP_001827779.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326780729|ref|ZP_08239994.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178468576|dbj|BAG23096.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326661062|gb|EGE45908.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 216

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 6/142 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F              + +       A I   + L+     ++    + ++  
Sbjct: 78  PKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRQLA- 136

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            A Y  +  ++           T RE   L  ++ G ++ EIA  L +   TV  +++S+
Sbjct: 137 -AEYGTDKARAALDRAAL----TEREAAVLRLMARGLSNAEIAAALVVGTETVKTHVSSV 191

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R+ A+  A  +  V
Sbjct: 192 LAKLGARDRTQAVIAAYESGFV 213


>gi|170767404|ref|ZP_02901857.1| nitrate/nitrite response regulator NarP [Escherichia albertii
           TW07627]
 gi|170123738|gb|EDS92669.1| nitrate/nitrite response regulator NarP [Escherichia albertii
           TW07627]
          Length = 215

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  +          D+    L   +     G  +   +    L +R             
Sbjct: 95  IFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVSQYLHER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    +++ 
Sbjct: 200 SRVAATILFLQHR 212


>gi|42523311|ref|NP_968691.1| LuxR family transcriptional regulator [Bdellovibrio bacteriovorus
           HD100]
 gi|39575517|emb|CAE79684.1| putative transcriptional regulator, LuxR family [Bdellovibrio
           bacteriovorus HD100]
          Length = 129

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE E    +S+G ++ E+A  L ++  TV  ++ +I +K   K+R+  I +
Sbjct: 11  LSNREAEVAELVSKGLSNKEVANQLFVTEKTVKFHLTNIYKKMNVKSRAQLIVW 64


>gi|15640423|ref|NP_230050.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587593|ref|ZP_01677358.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121727264|ref|ZP_01680423.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147675776|ref|YP_001218664.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153818257|ref|ZP_01970924.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153822263|ref|ZP_01974930.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|227080607|ref|YP_002809158.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|229507036|ref|ZP_04396542.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286]
 gi|229508809|ref|ZP_04398301.1| hypothetical protein VCE_000215 [Vibrio cholerae B33]
 gi|229519797|ref|ZP_04409240.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9]
 gi|229530241|ref|ZP_04419629.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)]
 gi|229606322|ref|YP_002876970.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236]
 gi|254850628|ref|ZP_05239978.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255743782|ref|ZP_05417739.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101]
 gi|262153605|ref|ZP_06028733.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE
           91/1]
 gi|262167639|ref|ZP_06035343.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27]
 gi|262191516|ref|ZP_06049700.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT
           5369-93]
 gi|297580534|ref|ZP_06942460.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298501071|ref|ZP_07010872.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9654817|gb|AAF93569.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548166|gb|EAX58238.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121630383|gb|EAX62778.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|126511216|gb|EAZ73810.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126520219|gb|EAZ77442.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146317659|gb|ABQ22198.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|227008495|gb|ACP04707.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227012251|gb|ACP08461.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|229332014|gb|EEN97502.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)]
 gi|229344486|gb|EEO09461.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9]
 gi|229354212|gb|EEO19143.1| hypothetical protein VCE_000215 [Vibrio cholerae B33]
 gi|229355781|gb|EEO20701.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286]
 gi|229368977|gb|ACQ59400.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236]
 gi|254846333|gb|EET24747.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255738531|gb|EET93919.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101]
 gi|262023975|gb|EEY42672.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27]
 gi|262030632|gb|EEY49268.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE
           91/1]
 gi|262032614|gb|EEY51168.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT
           5369-93]
 gi|297534950|gb|EFH73785.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297540319|gb|EFH76379.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 214

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  Y+   F+S+ V      +LT RE++ L  +  G ++ +IA  L IS  T
Sbjct: 129 PRHVSSQLLHYYRY-AFQSHQVQAT--VDLTAREIQILRCLQTGASNMQIAENLFISEFT 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V +++  I +K   K R  AIA+ V  N++
Sbjct: 186 VKSHLYQIFKKLNVKNRVKAIAW-VNQNLL 214


>gi|330809309|ref|YP_004353771.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377417|gb|AEA68767.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 165

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           + P G       + E  ++  YQA      D       +LT R+ + L  I+ GKT+ EI
Sbjct: 61  IDPAGIADAIMAIREGEVVVKYQAENAILDDALS----QLTARQRQVLGLIAAGKTNKEI 116

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           A  LGIS  TV  +++S+++     TR+ A A
Sbjct: 117 ARDLGISPFTVRIHVSSLLKSLGVPTRAAAAA 148


>gi|271968610|ref|YP_003342806.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511785|gb|ACZ90063.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 216

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ +  ++ G+T+ E+A  L +S +TV  ++ SI  K   + R    A+A  + 
Sbjct: 154 PLTERELDVVRLVARGRTNQEVAAELFVSLSTVKTHLGSIQAKLGARNRVEIAAWAWESG 213

Query: 245 IV 246
           +V
Sbjct: 214 VV 215


>gi|224369516|ref|YP_002603680.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding
           protein [Desulfobacterium autotrophicum HRM2]
 gi|223692233|gb|ACN15516.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding
           protein [Desulfobacterium autotrophicum HRM2]
          Length = 219

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+EG  + EIA  L IS  TV  +   I +K      +    YA+R  +
Sbjct: 156 LSAREREVLQLIAEGHANREIAGHLYISPKTVEAHRNHIQKKLGLNGTAELTKYAIRKGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|254386960|ref|ZP_05002242.1| two-component regulator [Streptomyces sp. Mg1]
 gi|194345787|gb|EDX26753.1| two-component regulator [Streptomyces sp. Mg1]
          Length = 220

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 11/164 (6%)

Query: 89  CMALSE--KDKYYNVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLTFDVARIRI 142
            +A+      +    L R       +  T+ +N            + Y   +     +  
Sbjct: 60  DIAMPRQTGLQAARELSRLRPGLRILMLTMYDNEQYFFEALKAGASGYVPKSVADRDLVE 119

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                      I      E  L+  Y         +       +T RE E L  ++EG T
Sbjct: 120 ACRAALRDEPFIYPGA--ETTLIRTYLDRARTGGALPAR---PITEREEEILKLVAEGHT 174

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S EI   L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 175 SKEIGDFLVISAKTVERHRANLLQKLGLRDRLELTRYAIRVGLI 218


>gi|261407019|ref|YP_003243260.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283482|gb|ACX65453.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 601

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 65/187 (34%), Gaps = 24/187 (12%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + V             +   WP   +R + L+  +     L+            +   + 
Sbjct: 436 MDVEMPNLDGISASRTIKESWPH--IRILILTTFEDTKQALE-----------AMRSGVD 482

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVH 179
                  +   L   +  +  G  L+         D+     L A  +A+  +     + 
Sbjct: 483 GYLLKSMQPLELAETIRTVHRGGTLI---------DQGMSHKLFAQLEADNSRDDPSSIK 533

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               ++LT RE+E L ++SEG     IA  L +S  TV NY +S+  K   + R  A+  
Sbjct: 534 ASSAYDLTPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVRNREEAVQK 593

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 594 AREAGLL 600


>gi|296503059|ref|YP_003664759.1| two-component protein kinase [Bacillus thuringiensis BMB171]
 gi|296324111|gb|ADH07039.1| two-component protein kinase [Bacillus thuringiensis BMB171]
          Length = 319

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L    F              + Y   + D   +   + L++  G +I  D L+     
Sbjct: 181 RVLILSTFQNTERAKEIIRNGADGYVLKSIDSRELAESIRLVYRGGAMITHD-LFHRMWE 239

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +  +F+S     G ++ L+ RE+E L  +S+G     IA  L +S  TV NY +++ 
Sbjct: 240 ENKETGLFESRSD--GIEYGLSKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLY 297

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   K R  A+  A    ++
Sbjct: 298 EKLGVKNREEAVQKAKDIGLL 318


>gi|282857278|ref|ZP_06266517.1| DNA-binding response regulator, LuxR family [Pyramidobacter
           piscolens W5455]
 gi|282584883|gb|EFB90212.1| DNA-binding response regulator, LuxR family [Pyramidobacter
           piscolens W5455]
          Length = 216

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 64/184 (34%), Gaps = 9/184 (4%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                  E+    +   D     +  +  ++K    +   +   +     H     I   
Sbjct: 38  AEAVAAAERLQPDVALMDMTMPRLNGIQATQKIAAGSPGTK---VLVLSMHGDKNLIVES 94

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGK 182
                R   L    ++     +     G+  L   +     L+    +  + + +   G 
Sbjct: 95  LKAGARGYVLKECSSQELCLAIQTVANGQYYLTPAI-----LSTLIGDYLRLTENEEQGS 149

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE++ L  + +G  + +IA  L IS+NTV+ +   I+ K    + +    YA+R
Sbjct: 150 DCPLSERELDVLKLLVKGCNAKQIAEQLSISKNTVDTHRRHILDKLGCNSMAELTRYAIR 209

Query: 243 NNIV 246
              +
Sbjct: 210 EGYL 213


>gi|282898145|ref|ZP_06306138.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Raphidiopsis brookii D9]
 gi|281196969|gb|EFA71872.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Raphidiopsis brookii D9]
          Length = 216

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 73/216 (33%), Gaps = 17/216 (7%)

Query: 32  LLARMIPLDCTVSWTM-RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +   +  ++         M  ++ + G  H+ +      +EQ L  I   + P     C+
Sbjct: 8   IFEAIAHVETEQELQQALMETISLHFGVHHWGISFI---EEQFLTGIEIPEIPAV---CL 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLMLLF 148
             +    Y      PT          PE+               +  D   +        
Sbjct: 62  EANPVGSYVVERHAPTHELLV---LAPEDWKNFCTRHEHVMTGPIVCDGRLVGTLNFARD 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTS 203
           P       + L ++  L  + +    +  V W       +  LT RE+E    +++G T+
Sbjct: 119 PGSPPFNNNDLADLSALCIHLSAKIATLRVKWNMVKTMTECPLTARELEIAQLVAQGLTN 178

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EIA  L IS+NTV   +  + +K     R+  +A 
Sbjct: 179 GEIASQLWISQNTVKQSLKRMFKKLGVSARAEMVAK 214


>gi|238062966|ref|ZP_04607675.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237884777|gb|EEP73605.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 279

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L   +E  ++ +IA  L I+  TV  ++ +I  K    +R  AI  A    
Sbjct: 208 PLTSRELEVLRLTAEAMSNAQIASRLFITEATVKRHLTNIYAKLQAVSRVDAIRKATAAR 267

Query: 245 IV 246
           ++
Sbjct: 268 LI 269


>gi|189461961|ref|ZP_03010746.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136]
 gi|189431355|gb|EDV00340.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136]
          Length = 195

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 154 ILRDRLWEIGL---LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           + +D+L +  +      ++            ++ +L+ RE+E LT I++G  + EIA  L
Sbjct: 95  LPQDKLVKAIMQMRKQGHEVTHHPVSPQEMQQEHDLSPREIEVLTLITKGLINKEIADKL 154

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV ++  +I  K   K+ SG   YAV +  V
Sbjct: 155 NISLTTVISHRKNITEKLGIKSVSGLAIYAVMHGYV 190


>gi|91789884|ref|YP_550836.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699109|gb|ABE45938.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 208

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 161 EIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           E  LLA    N++        +    L+ RE+ECL+   +G+T+ E   IL  S  TVN 
Sbjct: 122 EAALLAWSALNIWPLLKRVLAEARSPLSPRELECLSLAFQGRTARESGDILVCSERTVNF 181

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++ M K     +  AI  A    ++
Sbjct: 182 HLSNAMAKLKVDNKLAAIQRACWFGLI 208


>gi|54025695|ref|YP_119937.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017203|dbj|BAD58573.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 231

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 2/135 (1%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           LF   F              + +   + D   + +G+  +   G       +    LL  
Sbjct: 84  LFVTTFGEDDYIAEAVRLAADGFVLKSGDPRELILGVHAVASGGAFFSP--VIARRLLDG 141

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A  F        +   LT RE E L  +  G ++ EIA  L ++  TV  +++SI+R 
Sbjct: 142 RPAARFDRAVAARRRFAALTPREQEILRLVGRGWSNAEIAAELHLAPGTVKVHVSSILRT 201

Query: 228 TATKTRSGAIAYAVR 242
           T  + R  A   AV 
Sbjct: 202 TGARNRVEAALVAVH 216


>gi|329935679|ref|ZP_08285485.1| putative two-component system response regulator, LuxR family
           [Streptomyces griseoaurantiacus M045]
 gi|329304857|gb|EGG48729.1| putative two-component system response regulator, LuxR family
           [Streptomyces griseoaurantiacus M045]
          Length = 227

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 6/169 (3%)

Query: 83  PFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  +V  + + E D              P  L    F              + +      
Sbjct: 49  PDVVVMDIRMPELDGIAATRLITGRPDGPRVLVLTTFDLDAHVFDALRAGASGFLLKDVH 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +  G+ ++     ++       +    A + +          +   LT RE   L  
Sbjct: 109 AAELLRGIRIVAAGESVLAPSATRRLLRHYAGRPSSGIETGRVPAELNRLTARERSVLGL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ G  + EIA  LGI+  TV +++ +++RK A + R  A   A    +
Sbjct: 169 LASGLDNTEIAADLGITVGTVKSHVNAVLRKLALRDRVQATILAYDLGL 217


>gi|326331183|ref|ZP_08197479.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325951078|gb|EGD43122.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+ A      ++ D    +   LT +E   L  I EG T+ EIA  + ++  TV NY++S
Sbjct: 134 LMTAKVMEKMRNPDGESPQMQALTPQEKRLLALIGEGLTNREIAGRMFLAEKTVKNYVSS 193

Query: 224 IMRKTATKTRSGAIAYA 240
           I+ K   + R+ A   A
Sbjct: 194 ILAKLGVQRRTQAALMA 210


>gi|297560982|ref|YP_003679956.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845430|gb|ADH67450.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 220

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 5/175 (2%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +     +V  D     V  +  + + +       P  +    F T    +       + +
Sbjct: 50  DAHRPDVVLMDLRMPRVDGITATRRLRARTPP--PEVVVLTTFDTDENILYALRAGASGF 107

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  ARI   ++ +     I+       +    A QA   +       +   L+ RE
Sbjct: 108 LLKDTPPARIVDAVLRVAEGEPILSASVTRRLMDRTAVQAGSHERARTALAR---LSPRE 164

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E    ++ G+T+ EIA  L +S  TV  ++++++ K     R+     A    +
Sbjct: 165 HEVALAVARGRTNAEIAAQLYMSVATVKAHVSNVLAKLDMDNRTQIALLAHDAGL 219


>gi|223934493|ref|ZP_03626414.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896956|gb|EEF63396.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 212

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 13/166 (7%)

Query: 83  PFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPENITPP----AGMDNRYCSLTFD 136
           P  ++  + L +         L+        +  T+ E+            + Y     +
Sbjct: 54  PHVVLMDLNLPQMPGTECIRRLKELLPTTQVIVLTVYEDSEHIFRALKSGASGYLLKRSE 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +      G  +          +A    + F            LT RE E L  
Sbjct: 114 PEEVMEAITTAREGGAPMS-------SQVAHRVVHSFHEPASPTVDTAALTDREKEILDL 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +++G  + EIA  + IS  TV  ++  I  K   ++RS AI   ++
Sbjct: 167 LTQGFANKEIADKMQISVTTVRTHLRHIYEKLHIRSRSEAIVKYLK 212


>gi|325570549|ref|ZP_08146275.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156395|gb|EGC68575.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus
           ATCC 12755]
          Length = 202

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 14/181 (7%)

Query: 68  LFQEQKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            F +        ++   D+V   M L     +            P  HTL ++  P   M
Sbjct: 33  AFTKPTDFFQAMANQSIDIVLLDMMLKGTHAFE---------LIPRIHTLTDDTLPKIIM 83

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +           +G+     K      D L    +   Y  N      +   KD  L
Sbjct: 84  LSGFYEPLLHKRAFELGIWAFLRKEASY--DELI-TTIKTVYHGNKVSPEHLFLEKDMRL 140

Query: 187 -TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  E + L  IS+ +T+++IA  L ISR TV N+++SI  K   +TR GA+   ++ N+
Sbjct: 141 LSEIERQVLELISQEQTNEKIAKKLFISRRTVENHVSSICNKLNVQTRIGAVREGIKLNL 200

Query: 246 V 246
           +
Sbjct: 201 I 201


>gi|298345245|ref|YP_003717932.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315655667|ref|ZP_07908565.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
 gi|298235306|gb|ADI66438.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315489731|gb|EFU79358.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
          Length = 233

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 3/140 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y + T     +   ++ +          RL    +L
Sbjct: 96  RFLALSVSDAAEDVVAVIRAGARGYVTKTIATPDLVDAIVRVAGGDAAFSP-RLAGF-VL 153

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ A            D  LT RE E +  I+ G    EIA  L IS  TV  +++S++
Sbjct: 154 DAFGAARTDMVGTDSELD-SLTEREFEVMRLIARGFAYKEIASELYISVKTVETHVSSVL 212

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RK     R     +A    I
Sbjct: 213 RKLQLSNRYELSKWAQDRRI 232


>gi|183601991|ref|ZP_02963360.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682902|ref|YP_002469285.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190478|ref|YP_002967872.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195884|ref|YP_002969439.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218876|gb|EDT89518.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620552|gb|ACL28709.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248870|gb|ACS45810.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250438|gb|ACS47377.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178205|gb|ADC85451.1| Transcriptional regulatory protein [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295793465|gb|ADG33000.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 236

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+   L IS  TV  ++++++RK     R+   
Sbjct: 168 AHDAELDSLSTREQEVMRLIARGYTYKEVGAELFISVKTVETHVSNVLRKLQLSNRNELT 227

Query: 238 AYAVRNNIV 246
            +A   +IV
Sbjct: 228 LWAADRHIV 236


>gi|209548302|ref|YP_002280219.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534058|gb|ACI53993.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 70

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +T RE E + W++ GKT+ EI  IL IS  TVN +IA+   +      +  +A A+RN 
Sbjct: 8   NVTPRETEIIGWMAAGKTAAEIGTILAISHITVNTHIANAKARLGVFKDTALVAAALRNG 67

Query: 245 IV 246
           I+
Sbjct: 68  II 69


>gi|104782132|ref|YP_608630.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95111119|emb|CAK15839.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 204

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 16/147 (10%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGM----DNRYCSLTFDVARIRIGLMLLFPKGR 152
                L++       V  ++ ++      +     + +   +     I   L+ +     
Sbjct: 66  ARLAELRQQLPRTALVVLSMVDDPEVINAVMTAGADGFIGKSLTPEEIGAALLAVREGEV 125

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++   R    GLL    A+          +  +LT R+ + L  I++GKT+ EIA  L I
Sbjct: 126 VV---RYAPSGLLHQEGAD---------SELEQLTHRQHDVLRLIAQGKTNKEIARELDI 173

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  TV  +++S+++     TR+ A   
Sbjct: 174 SPFTVRIHVSSLLKTLNVPTRTAAAVK 200


>gi|325291416|ref|YP_004267597.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966817|gb|ADY57596.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 208

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 10/160 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           +R   +       ++  +  E+   +  T  +       +      Y         I   
Sbjct: 54  IRMPVMDGVLGTKHLKNQFEEIKVVMLTTFMDEEYIKEALKCGAEGYILKNQPADSIIES 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     ++ R+       +A   ++M +       +   ++ RE   L  + EG ++
Sbjct: 114 LRAVAKGNIVLERE-------VATALSSMLREGKKTTPEQLAISPREFAILKLVGEGCSN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EI   L IS  TV NY+ +++ K   + R+    + ++N
Sbjct: 167 REIGRELKISEGTVRNYVTALLEKLGFRDRTQLAIFYIKN 206


>gi|261209952|ref|ZP_05924252.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
 gi|260841017|gb|EEX67549.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
          Length = 214

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G ++ +IA  L IS  TV +++  I +K   K R  AIA+ V  
Sbjct: 153 IDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAW-VNQ 211

Query: 244 NIV 246
           N++
Sbjct: 212 NLL 214


>gi|331005380|ref|ZP_08328764.1| Transcriptional activator protein vanR [gamma proteobacterium
           IMCC1989]
 gi|330420834|gb|EGG95116.1| Transcriptional activator protein vanR [gamma proteobacterium
           IMCC1989]
          Length = 271

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 162 IGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           + LLA      F S   H    K   LT +E E L WIS+G +  EI   + IS +TV+ 
Sbjct: 183 VNLLAHQFNTCFLSLTKHELIQKKIPLTQKEEEILKWISKGLSKPEIGDKMNISSHTVSY 242

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           Y+ SI +K  T      +  A++  ++
Sbjct: 243 YMRSIFKKMGTNNTVSTVIKAIKEELI 269


>gi|300088662|ref|YP_003759184.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528395|gb|ADJ26863.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 248

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+  L  +S+G T+ EIA+ L  S + V  Y+  IM K     R+     A + N
Sbjct: 186 QLSPREMSTLRLVSDGMTNKEIAMKLNCSESAVKGYVTRIMNKLNVTNRTQIALKASQLN 245

Query: 245 IV 246
           I+
Sbjct: 246 II 247


>gi|256787147|ref|ZP_05525578.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289771044|ref|ZP_06530422.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289701243|gb|EFD68672.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 8/187 (4%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITP 122
            +    ++   +     P   +  + + E D      +  T   +    V  T  E+   
Sbjct: 31  AEASDGREAVELARKHRPDVALLDIRMPEMDGLTAAGEMRTTNPDTAVVVLTTFGEDRYI 90

Query: 123 PAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
              +D     +     D   +  G+  +   G  +    L    L+   +       +V 
Sbjct: 91  ERALDQGVAGFLLKASDPRDLISGVRAVASGGSCLSP--LVARRLMTELRRAPSPRSEVS 148

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   LT RE E L  +  G ++ EIA  L +   T+  Y+++I  +   + R  A   
Sbjct: 149 GERTTLLTKREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAII 208

Query: 240 AVRNNIV 246
           A    +V
Sbjct: 209 AYEAGLV 215


>gi|297198347|ref|ZP_06915744.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714401|gb|EDY58435.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 209

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 11/142 (7%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              +    + T  + +         Y       A +   +        ++          
Sbjct: 78  CRVIVLTTYETDRDILRAVEAGAAGYLLKDLPRAELARSVRAAARGETVLAPT------- 130

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +AA   +  ++      +   L+ RE   L  +++G T+ EI   L I  +TV  ++  +
Sbjct: 131 VAARLVDQLRT----RPERPRLSARETAVLRLVADGCTNAEIGRRLYIGESTVKTHLLRV 186

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K     R+ A+  A+R  ++
Sbjct: 187 FGKLGVDDRTAAVTSAMRFGLL 208


>gi|302558693|ref|ZP_07311035.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           griseoflavus Tu4000]
 gi|302476311|gb|EFL39404.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           griseoflavus Tu4000]
          Length = 268

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++L+ RE E +  I+ G T+ +IA    IS  TV N+I  I  K  + +RS A A 
Sbjct: 200 YQLSTREAEIMDLIASGMTNQQIAATCFISEKTVKNHINRIFAKLHSTSRSEAAAK 255


>gi|289767283|ref|ZP_06526661.1| LuxR family transcriptional regulator [Streptomyces lividans TK24]
 gi|289697482|gb|EFD64911.1| LuxR family transcriptional regulator [Streptomyces lividans TK24]
          Length = 169

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G ++  I   L IS  T + ++++I+ K    +R+ A+A A R  +
Sbjct: 101 LTAREQDVLRLLALGHSNRRIGEELFISAKTASVHVSNILAKLNAASRTEAVAVAHRQGL 160

Query: 246 V 246
           V
Sbjct: 161 V 161


>gi|15802746|ref|NP_288773.1| transcriptional regulator NarP [Escherichia coli O157:H7 EDL933]
 gi|15832336|ref|NP_311109.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749599|ref|ZP_02774621.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4113]
 gi|168754943|ref|ZP_02779950.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4401]
 gi|168764687|ref|ZP_02789694.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4501]
 gi|168767816|ref|ZP_02792823.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4486]
 gi|168773087|ref|ZP_02798094.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4196]
 gi|168780045|ref|ZP_02805052.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4076]
 gi|168789011|ref|ZP_02814018.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC869]
 gi|168802408|ref|ZP_02827415.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC508]
 gi|195935573|ref|ZP_03080955.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807826|ref|ZP_03250163.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4206]
 gi|208812712|ref|ZP_03254041.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4045]
 gi|208820974|ref|ZP_03261294.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4042]
 gi|209398167|ref|YP_002271605.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4115]
 gi|217326666|ref|ZP_03442749.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. TW14588]
 gi|254794092|ref|YP_003078929.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223349|ref|ZP_05937630.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259101|ref|ZP_05951634.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283444|ref|YP_003500262.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7
           str. CB9615]
 gi|12516525|gb|AAG57328.1|AE005452_1 nitrate/nitrite response regulator (sensor NarQ) [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362551|dbj|BAB36505.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. Sakai]
 gi|187771336|gb|EDU35180.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4196]
 gi|188016073|gb|EDU54195.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4113]
 gi|189002090|gb|EDU71076.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4076]
 gi|189357613|gb|EDU76032.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4401]
 gi|189362901|gb|EDU81320.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4486]
 gi|189365348|gb|EDU83764.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4501]
 gi|189371341|gb|EDU89757.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC869]
 gi|189375588|gb|EDU94004.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC508]
 gi|208727627|gb|EDZ77228.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4206]
 gi|208733989|gb|EDZ82676.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4045]
 gi|208741097|gb|EDZ88779.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4042]
 gi|209159567|gb|ACI37000.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4115]
 gi|209765848|gb|ACI81236.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765850|gb|ACI81237.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765852|gb|ACI81238.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765854|gb|ACI81239.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765856|gb|ACI81240.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|217319033|gb|EEC27458.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. TW14588]
 gi|254593492|gb|ACT72853.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763317|gb|ADD57278.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7
           str. CB9615]
 gi|320192180|gb|EFW66825.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. EC1212]
 gi|320641261|gb|EFX10739.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           G5101]
 gi|320646534|gb|EFX15450.1| transcriptional regulator NarP [Escherichia coli O157:H- str.
           493-89]
 gi|320651905|gb|EFX20280.1| transcriptional regulator NarP [Escherichia coli O157:H- str. H
           2687]
 gi|320657630|gb|EFX25428.1| transcriptional regulator NarP [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663086|gb|EFX30399.1| transcriptional regulator NarP [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667986|gb|EFX34889.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326339547|gb|EGD63358.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. 1125]
 gi|326344008|gb|EGD67769.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. 1044]
          Length = 215

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    L +R             
Sbjct: 95  VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLHER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 200 SRVAATILFLQQR 212


>gi|124266090|ref|YP_001020094.1| ATP-dependent transcriptional regulator-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258865|gb|ABM93859.1| ATP-dependent transcriptional regulator-like protein protein
           [Methylibium petroleiphilum PM1]
          Length = 933

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L ++ +G T+ EIA  L +S NTV  ++ +I  K     R  AI  A    +
Sbjct: 872 LSEREKEMLRFLLDGTTNREIAGRLFVSENTVKFHLKNIYSKLGVGNRLQAINTARALRL 931

Query: 246 V 246
           +
Sbjct: 932 I 932


>gi|332532863|ref|ZP_08408736.1| transcriptional regulator, LuxR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037709|gb|EGI74160.1| transcriptional regulator, LuxR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 216

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           IL    W    L    A +         +   LT ++   L ++ EG  + +IA  L IS
Sbjct: 119 ILEGDTWLPKELKNKVAEIEGEDREIAAQVASLTPQQYRVLQYLHEGLLNKQIAYELHIS 178

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             TV  +I +I RK     R+ A+  A +  +
Sbjct: 179 EATVKAHITAIFRKLGVYNRTQAVLIAAKLKL 210


>gi|330882972|gb|EGH17121.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 111

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A     M +           LT RE + L  ++ G ++ EI   LGI+  T   ++  ++
Sbjct: 23  ARLLRRMTERNTSGAALPESLTPRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVI 82

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R+ A    V   +V
Sbjct: 83  GKLGASDRTQAAVRGVALGLV 103


>gi|330467467|ref|YP_004405210.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328810438|gb|AEB44610.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
          Length = 226

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +  G  +DEI   L +S  T   +++  M K   + R+  +  A +  +
Sbjct: 162 LTDREREVLALVGRGLNNDEIGGELFLSPATARTHVSRAMAKLGARDRAQLVVIAYQTGL 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|302873358|ref|YP_003841991.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
 gi|307688472|ref|ZP_07630918.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Clostridium cellulovorans 743B]
 gi|302576215|gb|ADL50227.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
          Length = 895

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  L+ RE+E L  + +G T+ EIA    +S NTV  ++ +I  K    +R+ A+  A 
Sbjct: 831 EDELLSKREIEILQSLEQGATNSEIAEKSFVSINTVKTHLLNIYTKLDVHSRTRAVVKAK 890

Query: 242 RNNIV 246
              ++
Sbjct: 891 ELKLI 895


>gi|229076566|ref|ZP_04209526.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|229099785|ref|ZP_04230710.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229105944|ref|ZP_04236568.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229118847|ref|ZP_04248196.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228664648|gb|EEL20141.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228677518|gb|EEL31771.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228683674|gb|EEL37627.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228706599|gb|EEL58812.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 189

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|254974814|ref|ZP_05271286.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092202|ref|ZP_05321680.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313941|ref|ZP_05355524.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255516621|ref|ZP_05384297.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649721|ref|ZP_05396623.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306519831|ref|ZP_07406178.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 214

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    + LT +E+  +  I+ G  + EI+  L +S  T+ N I +I+ K   + R+  + 
Sbjct: 146 HISDMYNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITNILGKLELRDRTQLVI 205

Query: 239 YAVRNNIV 246
           +A +N IV
Sbjct: 206 FAFKNKIV 213


>gi|254464109|ref|ZP_05077520.1| two component response regulator [Rhodobacterales bacterium Y4I]
 gi|206685017|gb|EDZ45499.1| two component response regulator [Rhodobacterales bacterium Y4I]
          Length = 214

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L    A   K  D   G    LTGRE   L  +++GK++ E+A  L IS  TV  +  +I
Sbjct: 128 LCTGAAGSLKPKD--NGAREALTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNI 185

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK    + +G   YA+ + ++
Sbjct: 186 KRKLGISSTAGLTRYALEHGVL 207


>gi|159043020|ref|YP_001531814.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157910780|gb|ABV92213.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
          Length = 239

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 18/189 (9%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              +  Q+     +V     FDL +   ++    +  +  R  +    V  +L       
Sbjct: 50  AALETAQDGFDPDLVM----FDL-KLPDVTGVSGFKTLRNRLPDARFLVISSLASVELVQ 104

Query: 124 AGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           + ++     +       AR+R  L  +   G  + +D        A  +     + +   
Sbjct: 105 SLLNEGAAGFLPKDTSTARLRDALAKIAAGGTFVPKDFRK-----AETEGVEGPAAEFDH 159

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI--- 237
            K  ELT ++   +  I +GK + EIA  L ++  TV  +I +++R+   + R+ A+   
Sbjct: 160 PKLAELTPQQQRIMRLICKGKPNKEIAYELSLAEATVKAHITALLRRLGARNRTEAVVVV 219

Query: 238 --AYAVRNN 244
             A A +  
Sbjct: 220 EEAMAAQRG 228


>gi|16760019|ref|NP_455636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142210|ref|NP_805552.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213162401|ref|ZP_03348111.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213427737|ref|ZP_03360487.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581810|ref|ZP_03363636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213618652|ref|ZP_03372478.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213646854|ref|ZP_03376907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213864885|ref|ZP_03387004.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828614|ref|ZP_06546439.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|291080868|ref|ZP_06537029.2| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|25298760|pir||AG0635 probable regulatory protein STY1179 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502313|emb|CAD08266.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137840|gb|AAO69401.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 208

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 45/85 (52%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           ILR   +    LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS
Sbjct: 124 ILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            NTV  ++ ++ +K A K R+ A++
Sbjct: 184 ENTVKTHLYNLFKKIAVKNRTQAVS 208


>gi|329948449|ref|ZP_08295174.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328522072|gb|EGF49192.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 240

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D    +L   V  +  G  LL P+    L  R+       A    
Sbjct: 110 VLGALRAGACGFLLKDTAPQALVDAVRTVHEGQSLLSPQVLARLMARMPHTVAAGA---- 165

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                D  W +D E LT R+ E L  I+ G ++ EI   LGI+R T  ++I +++ +   
Sbjct: 166 ----SDGSWAEDVEALTPRQREVLLLIARGLSNSEIEAELGITRATCRSHITALLARLDA 221

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+  +  A    ++
Sbjct: 222 RDRAQLVIAAYETGLI 237


>gi|260767312|ref|ZP_05876252.1| DNA-binding HTH domain-containing protein [Vibrio furnissii CIP
           102972]
 gi|260617719|gb|EEX42898.1| DNA-binding HTH domain-containing protein [Vibrio furnissii CIP
           102972]
          Length = 216

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  Y+         H     ELT RE++ L  +  G ++ ++A  L IS  T
Sbjct: 130 PRHVSSQLLHYYRHIF---QHHHTQATIELTTRELQILRSLQTGASNMQMAENLFISEFT 186

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243
           V +++  I +K + K R+ AI +A +N
Sbjct: 187 VKSHLYQIFKKLSVKNRTQAITWANQN 213


>gi|21311407|gb|AAM46700.1|AF448800_2 AhlR [Erwinia chrysanthemi]
          Length = 124

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               L + ++      ++    +    + RE E L W S GKT  EIA+ILGI+ +TV  
Sbjct: 28  AHEKLTSLHREMSRNRHNSKSQEADIFSQRENEILYWASMGKTYHEIALILGITTSTVKF 87

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I ++++K        AI   V  N++
Sbjct: 88  HIGNVVKKLGVLNAKHAIRLGVEMNLI 114


>gi|319948180|ref|ZP_08022340.1| putative two-component system response regulator [Dietzia cinnamea
           P4]
 gi|319438164|gb|EFV93124.1| putative two-component system response regulator [Dietzia cinnamea
           P4]
          Length = 217

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I+ G+++ EIA  L IS  TV  ++  +++K + + R+  + YA  N +
Sbjct: 157 LTPREREMVEQIATGRSNAEIATALFISEETVKTHVRRVLQKLSLRDRAQVVVYAYENGV 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|295395258|ref|ZP_06805465.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971893|gb|EFG47761.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 226

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 10/161 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+          +   +    F T    +T      + +         +   +  +   
Sbjct: 66  GLATTQHLITAGTQSKIIILTTFDTDEYVLTAIESGASGFLVKNTAPNDVVAAIRTVHDG 125

Query: 151 GRIILRDRLWEIGLLAAYQ------ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +I         L   ++      A      D       ELT RE + L  I+ G+T+ 
Sbjct: 126 DAVISPGPTRR--LFTTFRKRPGGPAACPSPTDSRLAD--ELTPRERDILALIARGRTNQ 181

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EI   L ++  T+  +I ++  KT  + R   + +A+R  I
Sbjct: 182 EICDELWLTMPTIKTHIGNLRAKTQARDRVQLVLFALRVGI 222


>gi|291301776|ref|YP_003513054.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570996|gb|ADD43961.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 132

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+  +  +S GK++  I   L IS +TV  Y   + RK     R+ A+A A+R  +
Sbjct: 71  LTERELTVVIGMSNGKSNARIGRELHISEDTVKTYARRLFRKLGVGDRTQAVAVALRTGL 130

Query: 246 V 246
           +
Sbjct: 131 I 131


>gi|302545854|ref|ZP_07298196.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463472|gb|EFL26565.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 219

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 55/176 (31%), Gaps = 5/176 (2%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++ L  +   D    L+  +  + +      L     +    +                +
Sbjct: 44  KEHLPDVALIDIQMPLMDGIEATRRLAADPALAGVRVVMLTNYGMDEYVFDALRAGAAGF 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   + +      ++      +  L+  Y      +         ELT RE
Sbjct: 104 LVKDIVPEDLLHAVRVAARGDALLAPSITRK--LIHRYVTQPLPTTGAALE---ELTSRE 158

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E +   + G ++ +IA  + IS  T   +I   M K   + R+  + +A  + +V
Sbjct: 159 REAVALAARGLSNSQIADHMVISPMTAKTHINRAMTKLHARDRAQLVVFAYESGLV 214


>gi|291300883|ref|YP_003512161.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570103|gb|ADD43068.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 427

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL  RE++ L  ++ G  +  IA  L IS NTV  ++ +I++K    +R+ A   A    
Sbjct: 359 ELNPRELDVLAKLAGGLRNRRIAEELHISENTVKFHVGNILQKLGVASRNEAAVLARDAG 418

Query: 245 I 245
           I
Sbjct: 419 I 419


>gi|110637589|ref|YP_677796.1| response regulator, positive activator of uhpT transcription
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110280270|gb|ABG58456.1| response regulator, positive activator of uhpT transcription
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 318

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------DFEL 186
             +A     L+++    + I   RL    LL +   +     ++ + +        DF L
Sbjct: 198 NTIANAGFLLLIIIAIRKKISESRLEYQMLLLSKDDSKNTEIEIVFDEKRFQENCADFNL 257

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE E +  +++  T  EIA  L IS  TV  +I++I  KT    +S  +A 
Sbjct: 258 TAREREIIHLLAKAYTYKEIAEELFISDRTVAKHISNIYSKTGVSQKSELLAK 310


>gi|9297069|sp|O87971|YUKR_YERRU RecName: Full=Transcriptional activator protein yukR
 gi|3388087|gb|AAC28702.1| response regulator YukR [Yersinia ruckeri]
          Length = 229

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W S GKT  EIA+I GI+  TV +++ ++++K        AI   V   +
Sbjct: 164 LSPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGVELEL 223

Query: 246 V 246
           +
Sbjct: 224 I 224


>gi|302526449|ref|ZP_07278791.1| predicted protein [Streptomyces sp. AA4]
 gi|302435344|gb|EFL07160.1| predicted protein [Streptomyces sp. AA4]
          Length = 279

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 7/169 (4%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              VR +      ++     R       V   L + +   A +  R   L  +   +  G
Sbjct: 111 HRTVRAVLYGAVREHVRFGDRSVTAMVEVARDLEQELAVRAEVQRRLDLLAPEPEAVPSG 170

Query: 144 LMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                   R      L  I        L A    + +S      +   L+ RE++ L   
Sbjct: 171 KPADLEAVRE-SHAELRRIAAAVEDPELRARIDAVCQSLTGDPVRGPSLSPRELDVLEGA 229

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G+T+ +IA  LG+   TV +Y+ + MRK   KTR  A+  A R N++
Sbjct: 230 AAGQTNADIAEALGLGPETVKSYLRNAMRKLDAKTRLQAVNAARRANLL 278


>gi|255034530|ref|YP_003085151.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254947286|gb|ACT91986.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 210

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 14/175 (8%)

Query: 78  VSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPPAG----MDNRYC 131
           +++  P  ++  + +   D      ++++  +    +  T  E      G      N Y 
Sbjct: 44  ITASKPDLVLMDIDMPGLDGIEATRLVRKHFDALPVLIQTNFEEDDRIFGSLRAGANGYL 103

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                  R    L      G  +        G +AA     F S +    KD+ LT RE 
Sbjct: 104 LKKTSPERFLESLREALDGGAPM-------TGSIAARVLRHF-SAESEAKKDYHLTEREK 155

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L ++ +G +   IA    IS NTVNN+I +I  K    + + A++ A++  +V
Sbjct: 156 QILGFLVKGYSYKLIAAECTISYNTVNNHIRNIYDKLYVNSATEAVSLAIKERLV 210


>gi|157368365|ref|YP_001476354.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320129|gb|ABV39226.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 105

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           ++ +     K    T R+ E L W S GKT  EIA I  IS +TV  ++ +I+ K     
Sbjct: 27  WRKHHADTEKPI-FTPRKSEVLYWASMGKTYGEIAAIASISPSTVKFHMRNIVVKLGVSN 85

Query: 233 RSGAIAYAVRNNI 245
              AI   V   +
Sbjct: 86  ARQAIRLGVELGL 98


>gi|115372616|ref|ZP_01459923.1| two-component system regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823849|ref|YP_003956207.1| two-component system, regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370337|gb|EAU69265.1| two-component system regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396921|gb|ADO74380.1| Two-component system, regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 213

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 16/174 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-----PVFHTLPENITPPAGMDNRY 130
            +V  D     +  +      +     +R   L        V   L   +      D   
Sbjct: 49  DVVLMDVRMPRMTGLEALRAMRREAPERRVVLLTTFDEDSVVVEALRAGVKGFLLKDVTR 108

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L   + R+  G  LL P     ++    E+                H      LT RE
Sbjct: 109 DQLADAIRRVANGETLLPPGVAERVQRGFTEV-----------PQEFPHAELPEGLTRRE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +E +  I+ G ++ EIA +LG +  TV N  ++I+ K   + R+ A+  A+   
Sbjct: 158 LEVMRLIARGLSNREIATVLGTAEGTVKNQTSNILAKLGVRDRTRAVLRAMELG 211


>gi|324999047|ref|ZP_08120159.1| transcriptional regulatory protein DegU [Pseudonocardia sp. P1]
          Length = 220

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 36/73 (49%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +  +   G    LT RE E L  +  G ++  +A  L I   TV +++ S++RK     
Sbjct: 146 LERNEFWPGARLGLTHRESEVLALLVAGHSNRSVAAELVIGEETVKSHVRSVLRKLDVPD 205

Query: 233 RSGAIAYAVRNNI 245
           R+ A+A A+R  +
Sbjct: 206 RTAAVAAALREGV 218


>gi|262401518|ref|ZP_06078085.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
 gi|262352233|gb|EEZ01362.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
          Length = 214

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  Y+   F+++        +LT RE++ L  +  G ++ +IA  L IS  T
Sbjct: 129 PRHVSNQLLHYYRY-AFQTHQTQAT--VDLTAREIQILRCLQTGASNMQIAESLFISEFT 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V +++  I +K   K R  AIA+ V  N++
Sbjct: 186 VKSHLYQIFKKLNVKNRVKAIAW-VNQNLL 214


>gi|322377956|ref|ZP_08052444.1| putative DNA-binding response regulator VraR [Streptococcus sp.
           M334]
 gi|321281132|gb|EFX58144.1| putative DNA-binding response regulator VraR [Streptococcus sp.
           M334]
          Length = 201

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           +  + A Y+ N      +   ++  L T  E+  L  I +  ++++IA  L +SR TV+ 
Sbjct: 113 KSAIYAVYKGNHVIPDGLLEKQENNLLTDMELSVLELIVKEYSNEKIANSLFVSRRTVDT 172

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++I  K    +R GA+  A+R N+V
Sbjct: 173 HVSNICSKLGVTSRVGAVREAIRLNLV 199


>gi|300698157|ref|YP_003748818.1| nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           CFBP2957]
 gi|299074881|emb|CBJ54450.1| Nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           CFBP2957]
          Length = 217

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 6/162 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIG 143
           +    LS  +    ++Q   E    V     E              Y     +   +  G
Sbjct: 56  LNMPGLSGLETLQLLVQDLPEAAVVVLTVSEEADELKATLREGARGYLVKNIEADALVAG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I         L+A ++A    +       +  LT RE + +  +  G ++
Sbjct: 116 VRKAAAGEPVIAES--MTAKLVAHFRAPEKPAQPEAVPVE-RLTSRERDIVQGLVRGDSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L ++ +TV  ++ +I++K    +R     YAV N +
Sbjct: 173 KEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214


>gi|229010418|ref|ZP_04167622.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048]
 gi|229165953|ref|ZP_04293718.1| Sensory transduction protein ydfI [Bacillus cereus AH621]
 gi|228617506|gb|EEK74566.1| Sensory transduction protein ydfI [Bacillus cereus AH621]
 gi|228750838|gb|EEM00660.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048]
          Length = 161

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIA 207
           +G I+L+  + E  +        +K  +VH  K  +  LT +E+  L  I+ G  + EIA
Sbjct: 68  RGEILLQPNIMEKIV-------KYKRKEVHADKVAENNLTVKELFVLKAIARGYKNKEIA 120

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +GI+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 121 FDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 159


>gi|171058317|ref|YP_001790666.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775762|gb|ACB33901.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 236

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 43/105 (40%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           I L +L    R +        G   +       +          LTGRE + L  + +G 
Sbjct: 131 IALRVLAHFRRSLDETAAGAQGATPSSAQRCGPASTPQADDSVRLTGREEDVLRMMGKGH 190

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EI  +L IS NTVN Y+  + RK    +R+ A   A R  ++
Sbjct: 191 KAAEIGRLLAISVNTVNGYVREVYRKLGISSRAEAAIEATRRGLL 235


>gi|113954975|ref|YP_729804.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113882326|gb|ABI47284.1| possible DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 262

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E +  I  G  + EIA  L +S  TV +++++++ K   + R+ A  +A+ + 
Sbjct: 197 PLSERELEVIQCIICGMKNTEIADSLLVSAETVKSHVSTVIHKLGVRDRTQAAVFALTHG 256

Query: 245 IV 246
           +V
Sbjct: 257 LV 258


>gi|260682876|ref|YP_003214161.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686474|ref|YP_003217607.1| two-component response regulator [Clostridium difficile R20291]
 gi|260209039|emb|CBA62150.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212490|emb|CBE03410.1| two-component response regulator [Clostridium difficile R20291]
          Length = 217

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    + LT +E+  +  I+ G  + EI+  L +S  T+ N I +I+ K   + R+  + 
Sbjct: 149 HISDMYNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITNILGKLELRDRTQLVI 208

Query: 239 YAVRNNIV 246
           +A +N IV
Sbjct: 209 FAFKNKIV 216


>gi|21221661|ref|NP_627440.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|1293660|gb|AAB08053.1| AbsA2 [Streptomyces coelicolor]
 gi|4490635|emb|CAB38597.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 222

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 8/187 (4%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITP 122
            +    ++   +     P   +  + + E D      +  T   +    V  T  E+   
Sbjct: 31  AEASDGREAVELARKHRPDVALLDIRMPEMDGLTAAGEMRTTNPDTAVVVLTTFGEDRYI 90

Query: 123 PAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
              +D     +     D   +  G+  +   G  +    L    L+   +       +V 
Sbjct: 91  ERALDQGVAGFLLKASDPRDLISGVRAVASGGSCLSP--LVARRLMTELRRAPSPRSEVS 148

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   LT RE E L  +  G ++ EIA  L +   T+  Y+++I  +   + R  A   
Sbjct: 149 GERTTLLTKREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAII 208

Query: 240 AVRNNIV 246
           A    +V
Sbjct: 209 AYEAGLV 215


>gi|324998336|ref|ZP_08119448.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 224

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          D     L   V R+  G  L+                ++  +   
Sbjct: 91  VFGALEAGAGGFVLKDTGPDDLVHAVRRLAAGYGLVDHA---------VTRRVITEFARR 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                ++       LT RE E +  ++ G ++ EIA  L +  +TV +++   M K   +
Sbjct: 142 RPAPDELPPVPVTPLTPRESEIVRLLARGMSNAEIADELVVELSTVKSHLGRAMAKIGAR 201

Query: 232 TRSGAIAYAVRNNI 245
            R   + +A R+ I
Sbjct: 202 DRVQTVVWAYRSGI 215


>gi|320162117|ref|YP_004175342.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995971|dbj|BAJ64742.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 212

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 13/215 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++  D        +  L E  G   F +V      E+ L  +  S  P  L+  +++ +
Sbjct: 5   RILLADDHTLVRRGIRLLLE--GVPDFCVVGESASGEETLQKLQQSQ-PNVLLLDISMPD 61

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
            +    +L R  E+  P        I      D  Y +        R  L    P   +I
Sbjct: 62  TNG-LEILSRVLEI-SPAMVV----IMLSMYKDGEYIARALQAG-ARGYLWKDAPDEELI 114

Query: 155 LRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
              R+    EI L         ++          LT RE + L  ++ G T+  IAV LG
Sbjct: 115 RAIRVAMSGEIYLPPGVSMEHIQALIAAQPPVERLTAREKQVLALLASGLTTQAIAVRLG 174

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  TV  + + +M K      +    +A+R+ ++
Sbjct: 175 VSPKTVETHRSHVMSKLDLYDIASLTRFALRHGLI 209


>gi|291442824|ref|ZP_06582214.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291345771|gb|EFE72675.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D     +  +A + +      L     +    F              + +     
Sbjct: 51  DIVLMDIRMPRLDGLAATRRITGDPELNDVKVVMLTTFELDEYVFEALRNGASGFLVKDT 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+A + A   +           LT RE E + 
Sbjct: 111 EPEELLRAVRAVVGGDALLSPGVTRR--LIAEFAARSKEP--TAAASLALLTEREREVMA 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 167 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 217


>gi|284042145|ref|YP_003392485.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946366|gb|ADB49110.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F      +         +         +   +        +I  +    +    A QA +
Sbjct: 87  FDLDEYVLGALRAGARGFLLKDAGPELLVQAIHAAANGDALIAPNVTRRLLATFADQAPV 146

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                +       LT RE E L  ++ G+T+ EIA  L +  +TV  ++AS+M K   + 
Sbjct: 147 VPVQPID-----PLTKREEEVLALVARGRTNAEIATELFVGLSTVKTHVASLMTKLGARN 201

Query: 233 RSGAIAYAV 241
           R     +A 
Sbjct: 202 RVEIAIWAY 210


>gi|229112766|ref|ZP_04242298.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229153515|ref|ZP_04281693.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228630119|gb|EEK86770.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228670600|gb|EEL25912.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 189

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|221635975|ref|YP_002523851.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
 gi|221157551|gb|ACM06669.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
          Length = 213

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 26/168 (15%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPE----------NITPPAGMDNRYCSLTFD 136
           VR  ++   D    + +R  E    +     E                  D  +  L   
Sbjct: 59  VRLPSMQGDDVCRLIRERVPETRILILSAFGEDELVYRCVLAGAQGYVLKDIVHFDLKKT 118

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +  I  G  +L P+   ++ +RL     +                 D  L+  ++  L  
Sbjct: 119 LKMIARGEAVLDPRVASVVVERLRNRKAIT----------------DIPLSPHQLSVLRL 162

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I++G ++ EIA  L +S NTV  Y+  ++R+   + R  A+  A    
Sbjct: 163 IAQGLSNREIADRLFLSENTVKGYVQEVLRRLGARNRLEAVMIANERG 210


>gi|218672647|ref|ZP_03522316.1| transcriptional regulator, LuxR family protein [Rhizobium etli
           GR56]
          Length = 265

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 21/199 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           +Y     +   R D  Q+  L S     W +D          +    + +  ++   PV 
Sbjct: 76  DYWFGRGYF--RIDPVQQVALRSSAPFFWNYD---------TNADTLINRFMSDDTAPVT 124

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQA 170
             L E              +            + F +     R  L  I    LLA    
Sbjct: 125 RYLRERDM----STGVTVPVHMPGGDYATVTGIRFGEDSDFERHALRYIADFNLLAHVFH 180

Query: 171 NMFKS---YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
               S             LT RE ECL   +EG ++ EI+ I+G S  TV  ++ +  +K
Sbjct: 181 ETAYSLFDRKARSVGTIHLTERERECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKK 240

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+ A+  A    ++
Sbjct: 241 LGARNRTQAVVRATHYRLL 259


>gi|260773658|ref|ZP_05882574.1| DNA-binding HTH domain-containing protein [Vibrio metschnikovii CIP
           69.14]
 gi|260612797|gb|EEX38000.1| DNA-binding HTH domain-containing protein [Vibrio metschnikovii CIP
           69.14]
          Length = 216

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  ++      ++ H     +LT RE++ L  +    ++D+IA  L IS  T
Sbjct: 130 PRHVSNQLLHHFRYAF---HEQHTKATLDLTVREIQILRCLQAQASNDDIAKNLFISELT 186

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243
           V +++  I +K A K R+ AI++A  +
Sbjct: 187 VKSHLYQIYKKLAVKNRAQAISWANHH 213


>gi|229000138|ref|ZP_04159708.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229007659|ref|ZP_04165252.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228753610|gb|EEM03055.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228759675|gb|EEM08651.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 189

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AIA 
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSSGTVRNYISDVLTKLNAKNRIEAIAI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|153005603|ref|YP_001379928.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029176|gb|ABS26944.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 215

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y    F  A +   +  +       +  R  ++ LL+  + +     D      
Sbjct: 95  RAGASGYILKPFHAAELTRAVEDVLSGDAAPISPRAAKV-LLSELRGD---PPDQKAKDG 150

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L  +  G T  ++A  LGI+  TV  Y+  I  K    T++ A   AV  
Sbjct: 151 PALSKRELEVLQLLVHGHTYADVAQALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVAR 210

Query: 244 NIV 246
            +V
Sbjct: 211 GLV 213


>gi|91223298|ref|ZP_01258564.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|91192111|gb|EAS78374.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
          Length = 222

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + +T++S G ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A  N
Sbjct: 157 LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214


>gi|83942258|ref|ZP_00954719.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
 gi|83846351|gb|EAP84227.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
          Length = 220

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 17/163 (10%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAG-MDNRYCSLTFDVARIRIG 143
           +    +        +L+R  +    +   H  PE I+         Y         I++ 
Sbjct: 65  LNMPEIGGLSATEILLERQPDTRIVILSMHDNPEYISSALSHGAMGYILKDVPTDEIKLA 124

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R           L    Q ++             LT RE   L  +++GK++
Sbjct: 125 IDTVMRGERY----------LCTGAQGSLEPKDAARES----LTEREQTILLQLAQGKSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 171 KEVALTLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGVL 213


>gi|300783390|ref|YP_003763681.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792904|gb|ADJ43279.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 110 CPVFHTL-PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
            P  H + P++          + ++   +A    G++ +   G I +RD +  +    A+
Sbjct: 71  VPALHRVSPDSRILLFTAFPEHVAVAPTLAAGACGIL-VKHAGAIAIRDAIRSVVRTGAF 129

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +     S          +T RE + L  ++ G T+ EI   L +S NTV  Y+ ++M+K 
Sbjct: 130 RTGTPASSTA------PVTAREYDVLRLVAAGHTNPEIGTELNLSINTVKTYLWTVMQKL 183

Query: 229 ATKTRSGAIAYAVRNNIV 246
           A + R+  IA A    ++
Sbjct: 184 AARNRAQLIANARGQGLL 201


>gi|295691166|ref|YP_003594859.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295433069|gb|ADG12241.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC
           21756]
          Length = 249

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 41/94 (43%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +   R  E+   A    + ++           LT RE++CL W + GKT  +IA I+GI
Sbjct: 151 ALYAARADELHGAALRLVSAYRDGQDDDAPPVRLTKREIQCLKWAAAGKTDADIAQIIGI 210

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV  ++ +   K     R+ AI  A     +
Sbjct: 211 AGPTVRFHVQNAALKLRVAGRAQAIHRATGLGYI 244


>gi|307131286|ref|YP_003883302.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Dickeya dadantii 3937]
 gi|306528815|gb|ADM98745.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Dickeya dadantii 3937]
          Length = 215

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 59/161 (36%), Gaps = 9/161 (5%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFH---TLPENITPPAGMDNRYCSLTFDVARIRIGL 144
               ++  +    + + P      VF       + I+      + Y     +   + + L
Sbjct: 60  NMPGMNGLETLARLRETPLSGRIVVFTVSNHEEDVISAFKSGADGYLLKDMEPEDLLVAL 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++         L     A++ ++         +LT RE + L  I++G  + 
Sbjct: 120 HQAAAGKMVLSD------ALTPVLAASLRETRSSDTRDIQQLTPREKDILKLIAQGLPNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  L I+ +TV  ++  +++K   ++R  A  + V+  I
Sbjct: 174 VIARKLTITESTVKVHVKHLLKKMKLRSRVEAAVWVVQEKI 214


>gi|290956336|ref|YP_003487518.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645862|emb|CBG68953.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 235

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 3/181 (1%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D   ++    +V  D     V  +  +E+ +       P  +    FH   + +    
Sbjct: 51  EVDALVDRTRPDVVLMDIRMPTVDGLTATERLRTRA--DGPQVVVLTTFHADDQVLRALR 108

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +       A I   +  +     ++       +   AA  A   + +D    +  
Sbjct: 109 AGAAGFVLKDTPPADIVDAVRRVAAGDPVLSPAVTRRLMAHAADGAPGTR-HDTARARLA 167

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  RE E    +  G ++ EIA  L +S  TV  +++ ++ K     R           
Sbjct: 168 VLNDREREVAVAVGRGASNAEIAAELFLSVATVKTHVSRVLAKLGLNNRVQIALLTYDAG 227

Query: 245 I 245
           +
Sbjct: 228 L 228


>gi|331669588|ref|ZP_08370434.1| putative 2-component transcriptional regulator [Escherichia coli
           TA271]
 gi|331063256|gb|EGI35169.1| putative 2-component transcriptional regulator [Escherichia coli
           TA271]
          Length = 148

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +  D +LT RE E L  I++GKT+ EIA  L +SR  V  +  +IM+K    + 
Sbjct: 74  EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKKVETHRLNIMKKLDVHSG 133

Query: 234 SGAIAYAVRNNI 245
              I  A+R  +
Sbjct: 134 IELIKTALRMGV 145


>gi|326330390|ref|ZP_08196699.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|326330395|ref|ZP_08196703.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951670|gb|EGD43702.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951816|gb|EGD43847.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 363

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  LT RE + L  ++ G T+  IA  L IS +TV +++  I+RK     R+ AIA 
Sbjct: 301 EEPLTSRERDVLELMAVGATNPMIASELVISASTVKSHVRHILRKLGAVNRAQAIAR 357


>gi|323176891|gb|EFZ62481.1| response regulator [Escherichia coli 1180]
          Length = 204

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 84  VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 130

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 131 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 188

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 189 SRVAATILFLQQR 201


>gi|291302798|ref|YP_003514076.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572018|gb|ADD44983.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 900

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I EG ++ +IA  L IS +T   +++ I+ K    TR+ A   A +  +
Sbjct: 838 LTEREHEVLALIVEGLSNRQIAAKLYISPSTAGVHVSHILAKLGAATRTEAATIAHKRGL 897

Query: 246 V 246
           V
Sbjct: 898 V 898


>gi|229087841|ref|ZP_04219955.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228695477|gb|EEL48348.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 189

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|118478620|ref|YP_895771.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043062|ref|ZP_03110301.1| response regulator [Bacillus cereus 03BB108]
 gi|118417845|gb|ABK86264.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196026546|gb|EDX65214.1| response regulator [Bacillus cereus 03BB108]
          Length = 597

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 97/253 (38%), Gaps = 11/253 (4%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E  Q  + +    EQ T  + ++P ++  +  +I L       +   +L + +      
Sbjct: 347 LEQVQGTLSVQSNVEQGTLIICNIPLQTKPVHDIIRLLVVDDQALITNSLEQILENQTDF 406

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119
           +V    +   +   +     P  ++  + + E +    +L+   R   +   +  T  ++
Sbjct: 407 IVVGKAYDGSEALILCEQLQPDIVLMDIQMPEMNGIEALLEMKRRWPNMKIVLMTTFEDS 466

Query: 120 ITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMF 173
           +     ++     Y   +     ++  L L++  G  I +    R++E   L   Q    
Sbjct: 467 LQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIFEEMKLQREQLAKI 526

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS    +   + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R
Sbjct: 527 KSTKQTF--PYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNR 584

Query: 234 SGAIAYAVRNNIV 246
             AI  A   NI+
Sbjct: 585 EEAIKMARTENIL 597


>gi|116621654|ref|YP_823810.1| LuxR family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224816|gb|ABJ83525.1| transcriptional regulator, LuxR family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 228

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ++  +  MF   +      F LT RE + L  I+ GK++ E A  LGIS  T +++ + I
Sbjct: 145 ISDRRRRMFTPDEASVRLVFALTERERQVLVLIAAGKSTKEAAAQLGISYKTADSHRSRI 204

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K      +  + YA+R  ++
Sbjct: 205 LEKLGVHETASMVRYAIRAGLI 226


>gi|152968206|ref|YP_001363990.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151362723|gb|ABS05726.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 230

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 6/164 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   +        + +RP     +    F                +         +   
Sbjct: 67  VRMPVMDGLTAAKAITERPQAPSVVMLTTFDLDEYVFQALQAGATGFLLKDTPPRELVAA 126

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           + ++     ++         L+  Y A+          +    LT RE E L  +  G +
Sbjct: 127 VRIVAAGEAMLSPTVTRR--LVGHYAADAVNPRRREAAERLTTLTEREREVLACVGRGMS 184

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + E+   L +S  TV  +++ ++ K     R      A    ++
Sbjct: 185 NAEVGKELFMSEATVKTHVSRLLTKLQAHNRVQVAIVAHDAGLL 228


>gi|329851875|ref|ZP_08266556.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328839724|gb|EGF89297.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 212

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 42/81 (51%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A    + F+S  V    +  LT RE++ L  IS+G  + + A  LG++ +TV ++I SI
Sbjct: 129 IARRIVDHFRSTAVAHQPEATLTTRELDVLGLISKGLRNADAAHALGLAESTVASHIKSI 188

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
             K    TR+ A   A R  +
Sbjct: 189 YSKLGITTRAEAAIRAQRMGL 209


>gi|319784914|ref|YP_004144390.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170802|gb|ADV14340.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 908

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 46/118 (38%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           P+G    +      V    + L     K    L      I   A       +       +
Sbjct: 777 PSGFIRSFVDEGRPVVEGLMRLRAAQAKTDPALSAYASRIIDAAQAMPVATRKLTAPAAE 836

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +LT RE E L +++EG ++ +IA+ L +S  TV  ++ +I  K A   R  A+  A
Sbjct: 837 KEQLTQREAELLRYLTEGMSNRDIALALSVSETTVKWHLKNIFGKLAVTNRVQAVRAA 894


>gi|238025036|ref|YP_002909268.1| FOG PAS/PAC domain-containing protein [Burkholderia glumae BGR1]
 gi|237879701|gb|ACR32033.1| FOG: PAS/PAC domain protein [Burkholderia glumae BGR1]
          Length = 529

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 1/113 (0%)

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVEC 193
            D++  +   M L       ++D  W    L    AN+ ++     G    +LT RE + 
Sbjct: 387 LDISERKRTEMELIQAIETAMQDASWFSRTLIEKLANVRRAKAPDAGAQLADLTARERDV 446

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    IV
Sbjct: 447 FDLLCHGLPDKEIANRLGLAPNTVRNHVATIYTKLDVHSRGEAIVWARERGIV 499


>gi|118618297|ref|YP_906629.1| putative regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118570407|gb|ABL05158.1| conserved hypothetical regulatory protein [Mycobacterium ulcerans
           Agy99]
          Length = 411

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT REVE L  ++ G+T+ +IA  L IS  TV +++  ++RK     R+ A +  VR
Sbjct: 347 LTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVR 403


>gi|51892059|ref|YP_074750.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855748|dbj|BAD39906.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 230

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPV----FHTLPENITPPAGMDNRY 130
            +V    P  ++  +A+   +      + +      PV     +   E + P        
Sbjct: 43  EMVEKLRPDAVLMDIAMPRMNGIEATKELKKRHPDLPVLILSMYDSEEYVLPILRAGAAG 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL--LAAYQANMFKSYDVHWGKDFE--- 185
             L    A+  +  +     G++IL   +    +  L A ++            + +   
Sbjct: 103 YVLKRAAAQELVSALKAVTSGQVILHPDVARTVMDNLQAQESPQGPPVAPRGASEAQAQL 162

Query: 186 --LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E LT I+ G T+ +IA  L IS  TV  + A++M K           +A+++
Sbjct: 163 AQLTEREREVLTLIAHGLTNQQIAERLFISIKTVQAHRANLMEKLDLHDAVELTKFAIKS 222

Query: 244 NIV 246
            ++
Sbjct: 223 GLL 225


>gi|196231768|ref|ZP_03130625.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224240|gb|EDY18753.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 216

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPT-----ELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           P  +++ + L E      + Q        E+     H + + +        R   L  D 
Sbjct: 50  PDVVIQDITLPELSGMEVLRQVKKALPDTEVIMFTAHEMEDLVHQVFDAGGRSYLLKTDD 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
               I  +    + +     R+ +I L      +M +           LT RE E + +I
Sbjct: 110 PSHLIEAIRAAAEHKAYFTPRVSQIILRRLQSGSMGERP----APGNSLTSREREAVKFI 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG+T+ E+A +LG+S  T  ++ A++M+K   KT    I YA+RN I+
Sbjct: 166 AEGRTNKELADVLGVSLRTAESHRAAVMQKLGLKTIGELIRYALRNGII 214


>gi|298241134|ref|ZP_06964941.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554188|gb|EFH88052.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 1/164 (0%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  L+  + +   D    + +  T+L       L    +    +D         + +   
Sbjct: 50  PDILLLDLEMPGLDGVSVLERVRTDLPSIRTIILTAYGSDQRILDAVRAGAHGYLLKGAG 109

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
              +L     +     L E  +      +M +        +  LT RE   LT++++G +
Sbjct: 110 LDEVLHAVRVVAAGGSLLEPAVTERLLGSMEQLLRSGSIAEM-LTERERMILTYMAQGFS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  I   L ++  TV  +   + +K     R+ A+A A++  ++
Sbjct: 169 NKMIGQELHLAERTVKFHTTILFQKLQASNRAQAVAKALQERLI 212


>gi|320008415|gb|ADW03265.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus
            ATCC 33331]
          Length = 1015

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 4/177 (2%)

Query: 71   EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP--AGMDN 128
            E +L     +D P    R        +    L +    +         + TP      + 
Sbjct: 837  EAELARAEGADTPDHWRRAAEAFATLQRPYELAQVRFRWAEATLAATGDRTPAAELLREA 896

Query: 129  RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               +L      +   + LL  +GRI L  +   +G   A  A    + D    + F LT 
Sbjct: 897  HAVALRLGAVPLVENIELLAGRGRIALAGQDGTLGDEPARPAEPVPAVDA--IESFGLTS 954

Query: 189  REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    ++ G T+  IA  L IS  T + ++++I+ K    +R  A A A R  +
Sbjct: 955  REQEVHRLVAAGYTNRRIAEELYISPKTASVHVSNILAKLNVSSRGEAAALAHRFRL 1011


>gi|229493089|ref|ZP_04386884.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229320119|gb|EEN85945.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 219

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 78/240 (32%), Gaps = 32/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V++V+  +       V    T SD +  +   D   +    +  L   V    F   R 
Sbjct: 11  KVSVVVGDDHPLFREGVVRALTGSDSIDVLGEADDGAAALAMIRELRPQVALLDF---RM 67

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 ++ + V  D   +L   + L       +V+ +  +                   
Sbjct: 68  PHLDGTQVAAAVVRD---ELPTRVLLLSAHDESSVVYQALQ-----------------AG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +       A I   ++       ++         + A     + +  +        L
Sbjct: 108 AAGFLPKESTRAEIVSAVLDCAAGRDVLPP------SIAAGLVGEVRRRSEPSGPT---L 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L  I++G +   IA  L ++ +TV  ++  +  K     R  A+A A+R  ++
Sbjct: 159 SAREREVLGLIAQGASIPVIASQLFLAPSTVKTHVQRLYEKLGVNDRGAAVAAAMRQGLL 218


>gi|329667775|gb|AEB93723.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 224

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 68/174 (39%), Gaps = 6/174 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           +  + P  ++  + +   D       V ++   +   +  T  ++    + +    + Y 
Sbjct: 43  IEKNKPDVILMDVRMPVMDGTVCTKYVKEKYPNIKVIILTTFDDDDFIFSALKYGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A +   +  +   G +I  D   ++  L +  A    +  V+  +  + +  E 
Sbjct: 103 LKGGSPADLFTAIRTVAQGGAMINPDITEKVFRLFSKMAQSNYTISVNDKETKDFSRSEW 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +  +  G ++ EIA  L +S  TV NYI+ I+ K   + R+    +AV+  +
Sbjct: 163 CVIQQVGLGLSNKEIATKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQTGV 216


>gi|288923802|ref|ZP_06417891.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288344850|gb|EFC79290.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 289

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 59/163 (36%), Gaps = 5/163 (3%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     L     +Y   +   +L   V     +          R  S     AR  + 
Sbjct: 106 ADLRSLRNLPIYTDFYRPRETHDQLLNIVAVGRHQGTLLVFNRSRRGFSGR---ARELLD 162

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L        +  R+RL  + +            D   G+   LT RE E +  ++EG   
Sbjct: 163 LASPLVCQAVAQRERLSRLTIALRDAQRHAAVADRAAGRLAALTPREREVVDQLAEGIGD 222

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA +LGIS  TV+ ++  I RK   ++R+     AV    +
Sbjct: 223 REIARVLGISPRTVHKHLEQIYRKLGLQSRT--AVVAVVRGTI 263


>gi|254718531|ref|ZP_05180342.1| two component transcriptional regulator, LuxR family protein
           [Brucella sp. 83/13]
 gi|265983502|ref|ZP_06096237.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306838339|ref|ZP_07471185.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653]
 gi|264662094|gb|EEZ32355.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306406630|gb|EFM62863.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653]
          Length = 213

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +    +   L+ RE + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G 
Sbjct: 140 ESGEKRSEGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGL 199

Query: 237 IAYAVRNNI 245
             YA+ N +
Sbjct: 200 TRYAIENRL 208


>gi|237805558|ref|ZP_04592262.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331026665|gb|EGI06720.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 74

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R 
Sbjct: 9   VQLTIKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 68

Query: 244 NIV 246
            ++
Sbjct: 69  GVI 71


>gi|111019574|ref|YP_702546.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819104|gb|ABG94388.1| transcriptional regulator, LuxR family protein [Rhodococcus jostii
           RHA1]
          Length = 412

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE+E L  ++ GK +  IA  LGIS +TV  ++A +++K    +R  A A A+   
Sbjct: 343 DLNPRELEVLGHLATGKRNKAIADSLGISESTVKFHVAGVLKKLGVASRGEAGAIALEAG 402

Query: 245 I 245
           I
Sbjct: 403 I 403


>gi|320333213|ref|YP_004169924.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754502|gb|ADV66259.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 194

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++G+++ EIA  LG+S  TV  ++A +  K     R  A+  A    +
Sbjct: 133 LTPREGDVLRLLADGQSNKEIARSLGVSPETVKEHLARMYVKLDAPDRVSALNKARTLGL 192

Query: 246 V 246
           +
Sbjct: 193 I 193


>gi|253575534|ref|ZP_04852871.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845181|gb|EES73192.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 200

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 155 LRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
             DRL E    + A ++    +       +D  LT RE E L   ++G T+ EIA  L +
Sbjct: 107 SSDRLAEAIRRVKAGHREASPELVFGSLRRDNPLTAREQEILRLAAKGCTASEIAASLHL 166

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV NYI+ I+ K   K+R  A+  A  N  +
Sbjct: 167 SYGTVRNYISEILNKLEVKSRIEAVRLAEENGWI 200


>gi|228994069|ref|ZP_04153970.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228765717|gb|EEM14370.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 189

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AIA 
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSSGTVRNYISDVLTKLNAKNRIEAIAI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|254422920|ref|ZP_05036638.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190409|gb|EDX85373.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 214

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 70/203 (34%), Gaps = 18/203 (8%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY--------YNV 101
            A+T Y+    F++               S + P  +V  + + + D +         + 
Sbjct: 15  AAITRYLEDRGFVVNSAASGLAGFNSF--SQEVPDLIVSDIVMPDMDGFELCTKIRNTDA 72

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
            Q    +F      L + I       + Y    F    +   +     + ++   DR+  
Sbjct: 73  GQLLPFIFLSARSELEDRIQGHTLGADDYLVKPFHPRELIAKI-----EAQLARADRIRF 127

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              LA   A+              LT  E +    + +G T+ +I   L IS  TV  ++
Sbjct: 128 QIELALQNAH---PRLGREKSPLPLTPAEEKVFWEVIQGYTNKKIGTHLFISPRTVQTHL 184

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
           +SI+ K   + RS  I YA  N 
Sbjct: 185 SSILSKLELENRSQLIRYAFENG 207


>gi|187250721|ref|YP_001875203.1| two component LuxR family transcriptional regulator [Elusimicrobium
           minutum Pei191]
 gi|186970881|gb|ACC97866.1| Two-component transcriptional regulator, LuxR family
           [Elusimicrobium minutum Pei191]
          Length = 215

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 19/222 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS--------SDWPF 84
           + R++  D        + ++ E  G +  ++      +E  LD  V          D   
Sbjct: 1   MIRILLADDHALVRDGIKSILERKGKNISVVAEMGNGKE-MLDYAVKNKNIDVYVVDIAM 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            ++  +A  +K    N   +   +     +    ++        R   +    A      
Sbjct: 60  PILNGIAAVQKLLKINPDAK---VIVLSMYDDRASVEKAFKAGARGFVVKVSSAD----- 111

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
             +    + +   R +    ++ +    F        KD   LT +E + L  I+EG +S
Sbjct: 112 -EIIEAIKEVSAGRFYLCSKVSKFVVQGFLGKASPSKKDPSGLTPKEKQILQLIAEGFSS 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA   G+S NTV+ +  +IMRK     ++  + YA++  I
Sbjct: 171 KEIAKEFGLSLNTVHVHRNNIMRKLDIHKQAELVRYAIKEGI 212


>gi|152984927|ref|YP_001347090.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960085|gb|ABR82110.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 827

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  I++G ++ EI   L IS +TV  +   I  K     R+ A+A A    
Sbjct: 765 PLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALG 824

Query: 245 IV 246
           ++
Sbjct: 825 LL 826


>gi|37526610|ref|NP_929954.1| nitrate/nitrite response regulator protein NarP [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786042|emb|CAE15094.1| Nitrate/nitrite response regulator protein NarP [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 211

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
               +   H     ELT RE++ L  +S G T+ E+A +L IS  TV  +I ++++K   
Sbjct: 133 QHLANRHKHVDPLSELTKRELDVLKEVSSGMTNKEVADVLFISEETVKVHIRNLLKKLNV 192

Query: 231 KTRSGAIAYAVRNN 244
           ++R  A    +++ 
Sbjct: 193 RSRLAATIMYLQHR 206


>gi|323491776|ref|ZP_08096951.1| response regulator [Vibrio brasiliensis LMG 20546]
 gi|323313911|gb|EGA67000.1| response regulator [Vibrio brasiliensis LMG 20546]
          Length = 210

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L +     +   R+       +A Y  +   S D+      
Sbjct: 98  AGADGYLLKDTEPDELVELLRVSLQGNKAYSRE-------VAKYLEDRENSTDI----FD 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ELT RE++ L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A  
Sbjct: 147 ELTDRELQILKEVAKGFRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAATV 200


>gi|323358969|ref|YP_004225365.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323275340|dbj|BAJ75485.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 206

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 6/164 (3%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  ++  +   ++       +R   L  P     P  +       +       +      
Sbjct: 48  PELVLMDLQFGDRAAGAQATRRVRALAAP-----PYVLILTNYDTDGDILGAVEAGASG- 101

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L+   P   ++   R    G  A   A   +           L+ RE+E L  ++ G +
Sbjct: 102 YLLKDAPPHELLAGVRAAAAGHSALAPAIAGRLMARLREPRISLSAREIEVLRLVARGAS 161

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++A  L I+  TV +++A +  K    +R+ A++ A    I+
Sbjct: 162 NADVAERLHITDATVKSHLAHVFSKLGVTSRTAAVSTARSLGIL 205


>gi|311743852|ref|ZP_07717658.1| two component system response regulator [Aeromicrobium marinum DSM
           15272]
 gi|311312982|gb|EFQ82893.1| two component system response regulator [Aeromicrobium marinum DSM
           15272]
          Length = 218

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 3/145 (2%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             ++ P  +       L E +        R   L      + +  +     G  ++   +
Sbjct: 73  PGVEDPLAIVIITTFDLDEYVHGALKAGARGFLLKDAGPELLVQAIHAAANGDALISPDI 132

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               LL        +           LT RE E L  ++ G+T+ EIA  L I+ +TV  
Sbjct: 133 TRR-LLTTLAG--LERATPPAQPIEPLTEREEEVLLTVARGRTNAEIADELHITLSTVKT 189

Query: 220 YIASIMRKTATKTRSGAIAYAVRNN 244
           ++A++M K   + R     +A    
Sbjct: 190 HVAALMNKLGARNRVEVAMWAYETG 214


>gi|229072819|ref|ZP_04206018.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228710310|gb|EEL62285.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 189

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|228477748|ref|ZP_04062377.1| DNA-binding response regulator [Streptococcus salivarius SK126]
 gi|228250637|gb|EEK09848.1| DNA-binding response regulator [Streptococcus salivarius SK126]
          Length = 200

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +     +  L+ RE E L  +++G T+ EIA  L +S  TV NY+ +
Sbjct: 117 VLAGQKEYSPELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTA 176

Query: 224 IMRKTATKTRSGAIAYA 240
           I+ K     R+ A+  A
Sbjct: 177 ILTKLDAGNRTEAVRIA 193


>gi|222098824|ref|YP_002532882.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229142095|ref|ZP_04270620.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|221242883|gb|ACM15593.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228641384|gb|EEK97690.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 189

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|332709752|ref|ZP_08429711.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332351579|gb|EGJ31160.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 89

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 40/59 (67%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT+T  R G + +A++  
Sbjct: 12  LSYRELQIIEHVAAGLTNLEIAQELAISKRTVDNHISNILTKTSTDNRVGLVRWALKWG 70


>gi|312138001|ref|YP_004005337.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311887340|emb|CBH46651.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 771

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +  PA   NR  + T       +G        R      L E+   A   A+       
Sbjct: 647 GVVIPALRSNRDEARTLC--EGALGARAFDTAVRRGCELTLDEVVYFA--VADRLPEAAP 702

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +LT RE E    +++G T+  IA  L IS+ TV  ++  ++ K    +R+   A
Sbjct: 703 TERAASDLTPREQEVAELVAQGLTNKAIAEKLVISQRTVQGHVEHVLAKLGFNSRTQIAA 762

Query: 239 YAVRNN 244
           + V   
Sbjct: 763 WVVERG 768


>gi|297203493|ref|ZP_06920890.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714466|gb|EDY58500.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 239

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L +++ G T+  IA  L +S  TV N+++ ++ K     R+ A   A    +
Sbjct: 178 LTERERQVLDFLARGYTNRRIARTLVLSEKTVRNHVSHLLAKLQVNDRTEAALRAKEAGL 237


>gi|119715573|ref|YP_922538.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119536234|gb|ABL80851.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 188

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 37/75 (49%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +         G    LT REVE L  I++G ++ EIA  L +S N+V  YI S   K  
Sbjct: 102 GHALPGSGDPLGASVALTAREVEVLALITQGMSNPEIAEHLYLSINSVKTYIRSAYAKIG 161

Query: 230 TKTRSGAIAYAVRNN 244
             +R+ A+A+ + + 
Sbjct: 162 VTSRARAVAWCLLHG 176


>gi|300782102|ref|YP_003762393.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791616|gb|ADJ41991.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 208

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + L  I +G ++ EIA  L ++  TV NY+ S++ K   + R+ A A+ VR 
Sbjct: 149 LTERERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAAWIVRR 206


>gi|297538080|ref|YP_003673849.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257427|gb|ADI29272.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 212

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 60/170 (35%), Gaps = 15/170 (8%)

Query: 83  PFDLVRCMALSE---KDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFD 136
           P  +V  + +      +    +L + +     V     +++ P          Y +    
Sbjct: 50  PHVVVMDITMPGIGGLEAIERILAKDSSAKILVLSAHEDSVHPKRVLNAGAMGYLTKRSA 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++    + +           +  Q    +           L+ RE E    
Sbjct: 110 AEEMIKAIRVVATGKKYLEA---------SVAQQMAIQQLSGDQNPVDVLSPREFEVFMA 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++GKT++EIA  L +S  TV  ++ +I +K      +     A+R+ ++
Sbjct: 161 LAKGKTTNEIAETLFLSPRTVGTHLYNIKQKLNANNSAEIALIAMRSGLL 210


>gi|262225461|ref|YP_003280952.1| pCQ3_103 [Streptomyces sp. W9]
 gi|261597637|gb|ACX85604.1| pCQ3_103 [Streptomyces sp. W9]
          Length = 113

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             ++           + +T R+++ L  I+ G T+  IA  LGIS NTV   +ASI RK 
Sbjct: 13  HHHLKVLPRHPADPRYTVTRRQLDILRLIANGNTTTAIARRLGISYNTVTKQVASIHRKL 72

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+A A+R  ++
Sbjct: 73  RVSDRAQAVAVALRMGLL 90


>gi|302524582|ref|ZP_07276924.1| two component system response regulator [Streptomyces sp. AA4]
 gi|302433477|gb|EFL05293.1| two component system response regulator [Streptomyces sp. AA4]
          Length = 215

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 2/139 (1%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L    F              + +     D   +  G+  +      +       +  +  
Sbjct: 79  LMLTTFGEDEYIERALGLGASGFLLKAGDPRELLAGVHAVADGAAFLSPKVAHRV--ITR 136

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              N F        +   LT RE E L  ++EG ++ +IA  + +   TV  ++++I+ +
Sbjct: 137 LSGNRFSRAATARERVSVLTNREREVLVLLAEGLSNADIAARMFVVEGTVKAHVSTILTR 196

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R  A   A    +V
Sbjct: 197 LDVRNRVQAAITAFEAGLV 215


>gi|228961616|ref|ZP_04123225.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798098|gb|EEM45102.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 189

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|213963027|ref|ZP_03391286.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
 gi|213954368|gb|EEB65691.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
          Length = 235

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE E LT  S+G +S EIA  L IS  TVN +  +I  K   ++   AI  A + 
Sbjct: 173 FTLTPREKEILTLASQGFSSKEIAEKLFISTYTVNRHRQNIREKFNAESLIEAIDIARKK 232

Query: 244 NIV 246
            ++
Sbjct: 233 GVL 235


>gi|153825634|ref|ZP_01978301.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|149740664|gb|EDM54771.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
          Length = 214

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  Y+   F+S+        +LT RE++ L  +  G ++ +IA  L IS  T
Sbjct: 129 PRHVSSQLLHYYRY-AFQSHQAQAT--VDLTAREIQILRCLQTGASNMQIAENLFISEFT 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V +++  I +K   K R  AIA+ V  N++
Sbjct: 186 VKSHLYQIFKKLNVKNRVKAIAW-VNQNLL 214


>gi|72163208|ref|YP_290865.1| regulatory protein LuxR [Thermobifida fusca YX]
 gi|71916940|gb|AAZ56842.1| regulatory protein, LuxR [Thermobifida fusca YX]
          Length = 286

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 9/155 (5%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM------LLFPKGR 152
            +   R  E    V   +  ++     +  R  +    +    +  +      +      
Sbjct: 129 VDFGDRLLESVARVVQLVERDLAVEEEVRRRLAAAPPALHSAEVHELVAELSQIAATVQD 188

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVI 209
             +R RL ++       A    S D           L+ RE E L  ++ G T+DE+A  
Sbjct: 189 EGIRRRLVDVCRRTRLLAGRVPSADRSPAPAVAAVRLSPREREVLAEVARGCTNDEVAEA 248

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LG+  NTV +Y+ S MRK     R  A+  A    
Sbjct: 249 LGLLPNTVKSYLKSAMRKLGATNRVQAVNLARAAG 283


>gi|21229587|ref|NP_635504.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766463|ref|YP_241225.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21111059|gb|AAM39428.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571795|gb|AAY47205.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 210

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV-RCMA 91
             R+   D  V     + AL +  G +  ++   D  Q   LD++ + +   D+V   + 
Sbjct: 3   ALRIALADDQVLVRAALRALLQQQGIT--VVCEADDGQ-ALLDALATHN--VDVVLSDIR 57

Query: 92  LSEKDKYYNVLQ-RPTELFCPVF----HTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +   D    + Q R      PV         E +        +   L           + 
Sbjct: 58  MPGLDGIAALEQLRARGDRTPVLLLTTFDDSELLLRACEAGAQGFLLKDAAPDDLHEAIA 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
               G  +L+        ++         +            REV  L  ++ G ++ EI
Sbjct: 118 RVAAGETLLQP-------VSTDPVRARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 171 ARTLFLAEGTVKNYVSTILDKLGTRDRTRAVLKAITLRVI 210


>gi|325262648|ref|ZP_08129385.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032480|gb|EGB93758.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 206

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +E+  RE+E +  I++G ++ EIA  L +S  TV NY++SI+ K   + R+    +  ++
Sbjct: 146 YEINDRELEIIRLIADGLSNKEIASTLFLSEGTVRNYLSSILDKLELRDRTQVAVFYYQH 205

Query: 244 N 244
            
Sbjct: 206 K 206


>gi|298251564|ref|ZP_06975367.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546156|gb|EFH80024.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1171

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 68/188 (36%), Gaps = 16/188 (8%)

Query: 59   SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
            + +++      Q ++   +    +             D+   + Q    L  P  H+   
Sbjct: 1000 AQYMVALHYAGQNEQAHEVAERLFALTEPEGYLRVYLDEGGPMRQTLEALLTP--HSQQH 1057

Query: 119  NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             + P            F+  R   G  L  P  +           L +A QA+   S   
Sbjct: 1058 ELAPSTRAYISKLLAVFEQERQSAGTSLAAPTPKP---------ALSSAQQASAVFSV-- 1106

Query: 179  HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                   LT RE E L  ++ G ++ EIA  L I   TV  ++++++ K    +R+ AI+
Sbjct: 1107 ---PGASLTQREQEVLRLLATGASNQEIAQTLVIELPTVKKHVSNLLGKLRASSRTQAIS 1163

Query: 239  YAVRNNIV 246
             A   +++
Sbjct: 1164 RARALSLL 1171


>gi|229187578|ref|ZP_04314718.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228595945|gb|EEK53625.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 189

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|260575467|ref|ZP_05843466.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2]
 gi|259022387|gb|EEW25684.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2]
          Length = 245

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H      LT REV+CL+W++ G   D+IA  LGI   TV+ YI S   K   +TR  A+A
Sbjct: 176 HLPMLIGLTPREVDCLSWLAAGLRPDQIAETLGIGYRTVDKYIVSARGKLRARTRDQAVA 235

Query: 239 YAVRNNIV 246
            A+   ++
Sbjct: 236 KALTLRLI 243


>gi|271968827|ref|YP_003343023.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270512002|gb|ACZ90280.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 214

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 3/106 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLA---AYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           L+ + P  ++    R    GL     A  A +   Y         +T RE E LT I  G
Sbjct: 103 LLKVSPPEQLFAAIRTAVSGLATLDPAVTARVMAGYVGAPAIPGTVTPREREVLTLIGRG 162

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+ EI   L ++ +TV  +I  ++ K   + R+ A+ YA  + +V
Sbjct: 163 LTNREITAALSVTESTVGTHINRLLAKLHLRDRAEAVRYAYEHGLV 208


>gi|269862236|ref|XP_002650758.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348]
 gi|220065658|gb|EED43295.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348]
          Length = 119

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ + L  ++ GKT+ EIA  LGIS  TV  +++++++     TR+ A A
Sbjct: 50  LTARQRQVLGLVAAGKTNKEIAKQLGISPFTVRIHVSTLLKSLGVPTRAAAAA 102


>gi|238754417|ref|ZP_04615773.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC
           29473]
 gi|10444019|gb|AAG17669.1|AF274748_1 response regulator YruR [Yersinia ruckeri]
 gi|238707450|gb|EEP99811.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC
           29473]
          Length = 247

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L W S GKT  EIA+I GI+  TV +++ ++++K        AI   V   +
Sbjct: 182 LSPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGVELEL 241

Query: 246 V 246
           +
Sbjct: 242 I 242


>gi|332528686|ref|ZP_08404663.1| two-component response regulator [Hylemonella gracilis ATCC 19624]
 gi|332041752|gb|EGI78101.1| two-component response regulator [Hylemonella gracilis ATCC 19624]
          Length = 221

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 39/92 (42%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L    +    +A                +  LT R+ + L  + +G ++ EIA  + ++ 
Sbjct: 128 LEGGFYAPPSMAGAILGTAPRAGGGGTDEHGLTKRQHQVLARLCQGLSNKEIARDMNLTH 187

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           NTV  +I++I +     +R+ AI  A    IV
Sbjct: 188 NTVKTHISAIFKALNVMSRTQAIVEARLRGIV 219


>gi|325520456|gb|EGC99559.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 510

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 123 PAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           P  +  + C L    D++  +   M L       ++D  W    L    AN+ ++     
Sbjct: 365 PVAIHGQDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDA 424

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +
Sbjct: 425 GAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVW 484

Query: 240 AVRNNIV 246
           A    IV
Sbjct: 485 ARERGIV 491


>gi|284046302|ref|YP_003396642.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950523|gb|ADB53267.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 244

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 66/188 (35%), Gaps = 14/188 (7%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + VR  +         +S D   D VR + L+             EL   VF  L    +
Sbjct: 62  MDVRMPVLDGIAATRQISGDPALDSVRVLMLTT-----------FELDEYVFEALRAGAS 110

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                D     L   +  I  G  LL P    R+I R          A       +  + 
Sbjct: 111 GFLLKDVEPVELLRALELIAAGEGLLAPSVTRRLIARFAALAPPPADAAGTADDGAAALP 170

Query: 180 WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +  E LT RE E +  +  G T+ E+A  L IS  T   +++  M K   + R+  + 
Sbjct: 171 AAERLEVLTDREREVVALVGAGLTNHELAERLVISPATAKTHVSRAMGKLDARDRAQLVV 230

Query: 239 YAVRNNIV 246
            A  + +V
Sbjct: 231 LAYESGLV 238


>gi|256420538|ref|YP_003121191.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035446|gb|ACU58990.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM
           2588]
          Length = 198

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISR 214
           +   +  LLA  +   F +      +D  + L+ RE+E L  +  G T  +IA    IS 
Sbjct: 105 EAAMQTNLLAVQKVLAFFNRKNAGSQDHRYGLSPRELEVLDCLVNGDTYKKIAEHCHISV 164

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV ++I +I RK    +RSGAI  A++  +V
Sbjct: 165 GTVRSHIMNIYRKLDVNSRSGAIVKAMQERLV 196


>gi|229051023|ref|ZP_04194571.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229147892|ref|ZP_04276233.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228635542|gb|EEK92031.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228722332|gb|EEL73729.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 189

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|298252028|ref|ZP_06975831.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546620|gb|EFH80488.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1079

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query: 185  ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             LT RE+E L  ++EG ++ +IA +L I  +TV  ++ S++ K   ++R+ A+  A
Sbjct: 1018 PLTRRELEVLRLLAEGASNQQIAAVLVIQLSTVKKHVGSLLAKLGAESRTQALVKA 1073


>gi|289641751|ref|ZP_06473909.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289508395|gb|EFD29336.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 422

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           D  LT RE+E L  +++G T+  IA  L +S  TV  ++  I+RK     R+ A++ 
Sbjct: 342 DSPLTRREIEVLRHMADGATNARIATRLMVSEGTVKVHVKHILRKLGATNRAEAVSR 398


>gi|253989299|ref|YP_003040655.1| nitrate/nitrite response regulator protein narp [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780749|emb|CAQ83911.1| nitrate/nitrite response regulator protein narp [Photorhabdus
           asymbiotica]
          Length = 211

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
               +   H     ELT RE++ L  +S G T+ E+A +L IS  TV  +I ++++K   
Sbjct: 133 QHLANRHKHVDPLSELTKRELDVLKEVSSGMTNKEVADVLFISEETVKVHIRNLLKKLNV 192

Query: 231 KTRSGAIAYAVRNN 244
           ++R  A    +++ 
Sbjct: 193 RSRLAATIMYLQHR 206


>gi|238796231|ref|ZP_04639741.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
 gi|238719924|gb|EEQ11730.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
          Length = 123

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 39/88 (44%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L      + Y+  + +S           + RE E L W S GKT  EI++ILGI   TV 
Sbjct: 31  LAHEKRTSLYREVVRESDHKIANNKEIFSQRENEILYWASNGKTYQEISLILGIKTGTVK 90

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I ++++K        AI   V   ++
Sbjct: 91  FHIGNVVKKLGVLNAKHAIKLGVELQLI 118


>gi|33865102|ref|NP_896661.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33638786|emb|CAE07081.1| possible two-component response regulator [Synechococcus sp. WH
           8102]
          Length = 234

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHWGKDFELTGREVECLTW 196
           +R  +G   L    + I  D L+   ++A   + +           + ELT RE + L  
Sbjct: 114 SRELVGNGHLLKAIQAIDSDALYIDPVIAGVLRHSRLSRGHTSTSLNPELTVREEDVLRG 173

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I  G ++ EIA  L +S  TV + + +++ K   + RS A+  A RN++V
Sbjct: 174 ICRGLSNQEIADQLNLSIETVKHSVTAVLSKLDARDRSQAMLIAFRNDLV 223


>gi|239906985|ref|YP_002953726.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239796851|dbj|BAH75840.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 226

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGK 182
                 Y         +   +  +    R +      ++ L L  Y A      D  +  
Sbjct: 99  RAGAMGYVVKDSAATSLVAAIEAVLRGERYLDAAITPQVLLRLDEYAARKTGPRDPAYD- 157

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L  ++EG++   IA  L IS+ TV N+ A+I  K      +  + YA R
Sbjct: 158 --SLTRREQQILRLLAEGRSVAAIATELFISKKTVENHRANICGKLGLANLAELVRYAAR 215

Query: 243 NNIV 246
             IV
Sbjct: 216 LGIV 219


>gi|228917960|ref|ZP_04081496.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841757|gb|EEM86868.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 189

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|237732242|ref|ZP_04562723.1| transcriptional regulator NarP [Citrobacter sp. 30_2]
 gi|226907781|gb|EEH93699.1| transcriptional regulator NarP [Citrobacter sp. 30_2]
          Length = 225

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 76/197 (38%), Gaps = 20/197 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCM-----ALSEKDKYYNVLQRPTELFCPVFHTL 116
           L+V       + +  ++  D  FD+V        A+   ++    +         +    
Sbjct: 20  LIVDDHPLMRRGISQLLQLDPAFDVVAEAGDGASAIDLANRLDLDVILLDLNMKGMSGLD 79

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA---------- 166
             N     G+  +   LT   A   +  ++       +L+D   E+ L A          
Sbjct: 80  TLNALRRDGVTAQIIILTVSDAASDVYALIDAGADGYLLKDSDPEVLLEAIRNGAKGGKA 139

Query: 167 --AYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             A  +   +  D+   ++     LT RE++ L  +++G ++ +IA +L IS  TV  +I
Sbjct: 140 FSARVSEYLRERDLFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHI 199

Query: 222 ASIMRKTATKTRSGAIA 238
            +++RK   ++R  A  
Sbjct: 200 RNLLRKLNVRSRVAATI 216


>gi|182437063|ref|YP_001824782.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777678|ref|ZP_08236943.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465579|dbj|BAG20099.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658011|gb|EGE42857.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 216

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 4/158 (2%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +   E  +          +   V  T   +      + N  C       +     +L+ 
Sbjct: 60  RLDGLEVTRRLAGPDAENPMRVVVVTTFGLDEYVHTALGNGACGFLL---KRSGPTLLVE 116

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIA 207
                +  D L    L  +   +   +      +  + LTGRE E    +++G T+ EI 
Sbjct: 117 AVRAAMAGDTLISPSLTVSLLRHHRDAGRPRAAEPLDALTGRETEIARLVAKGMTNAEIG 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS  T   ++A++ RK   + R G  A+   N +
Sbjct: 177 AELFISAGTAKTHVANVQRKLDVRNRVGIAAWIWGNGL 214


>gi|315091877|gb|EFT63853.1| putative nitrate/nitrite response regulator protein NarL
           [Propionibacterium acnes HL110PA4]
          Length = 210

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G LA   A               LT RE + L   ++G ++ +IA  L +S  TV  +++
Sbjct: 128 GALAPAVAPRLMVR--MRSPRTSLTAREFDVLEASAQGLSNAQIAEFLVVSEATVKTHLS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +RS A+A A     +
Sbjct: 186 HIYTKLGVTSRSAAVAKARDIGFI 209


>gi|262172512|ref|ZP_06040190.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451]
 gi|261893588|gb|EEY39574.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451]
          Length = 214

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  Y+   F+++        +LT RE++ L  +  G ++ +IA  L IS  T
Sbjct: 129 PRHVSSQLLHYYRY-AFQTHQTQAT--VDLTAREIQILRCLQTGASNMQIAESLFISEFT 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V +++  I +K   K R  AIA+ V  N++
Sbjct: 186 VKSHLYQIFKKLNVKNRVKAIAW-VNQNLL 214


>gi|217976294|ref|YP_002360441.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
 gi|217501670|gb|ACK49079.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
          Length = 244

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           + + R  L   +  I      +A    + +     +  +T RE+E L W +EGK+  +I+
Sbjct: 146 WARRRFELTKDMVHIAHYVHQRAYKLHAKEDEIDLN-AITKREIEALEWSAEGKSLADIS 204

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++ IS  TV  ++ S   K     R  A+  A+R  ++
Sbjct: 205 ILMRISVETVKAHLDSARYKLCALNRVHAVTKAIRAGLI 243


>gi|170760443|ref|YP_001786768.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407432|gb|ACA55843.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 217

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         I  G+        ++  D    I L   Y+  +    D      + L
Sbjct: 100 ASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKEL---NDDDINLKYNL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NNIV
Sbjct: 157 TEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIV 216


>gi|77362110|ref|YP_341684.1| LuxR family CSG operon transcriptional regulator [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877021|emb|CAI89238.1| putative csg operon transcription regulator (LuxR family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 229

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R+IL     +I +  +  +++ +  ++       LT RE   +  I++G ++  IA  L 
Sbjct: 128 RMILSQAFSDILVATSSFSSLHEGIELKQDDYQHLTKRERSVIHLIAQGASNSVIADKLN 187

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           IS +TV  ++ S  +KT+++ R     +A R
Sbjct: 188 ISDHTVKTHLYSAFKKTSSRNRVELANWAQR 218


>gi|84495104|ref|ZP_00994223.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384597|gb|EAQ00477.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 224

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 2/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +  + +      L     +    F              + +     
Sbjct: 49  DVVLMDIRMPGTDGLEATRRIAADESLAETKVVILTTFDLDEYVFEAVRIGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +  G+  +     ++         L+  + +    +      +   LT RE E + 
Sbjct: 109 EPTELLRGVRAVAGGDALLSPRVTRR--LIGEFASRSRDTSMPAARELALLTDREREIVG 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EG ++DEIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 167 LVGEGLSNDEIATRLVVSPATAKTHVSRAMVKLHARDRAQLVVLAYESGLV 217


>gi|109898606|ref|YP_661861.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109700887|gb|ABG40807.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 215

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   LT +++GK+S EIA IL IS  TV  +  ++  K   ++ +  I YAV + 
Sbjct: 152 KLTTREQLILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLAELICYAVDHG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|323703023|ref|ZP_08114679.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532036|gb|EGB21919.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 213

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 45/105 (42%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + +  L    R ++R        +AA   N  K           LT +++     +++G 
Sbjct: 109 VEIFELKRAIRAVVRGETVLDSQVAASIVNKLKEVPNKNSSLSLLTEQQISIAKLVAQGL 168

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EIA  L +S NT+  +I +IMRK     R   +A  +  +I+
Sbjct: 169 KNREIAEQLYLSENTIKFHIQNIMRKLNVNNRIALVAKLLEKDII 213


>gi|258623350|ref|ZP_05718354.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM573]
 gi|258584316|gb|EEW09061.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM573]
          Length = 214

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-- 156
           +    +  +   P+  T P   T    +D R  +    V     GL         I    
Sbjct: 59  HAENSQIRQQLGPLKLTSPYFETILFNVDKRLKTEDLLVFGNLKGLFYANEDTGFIAHGL 118

Query: 157 ----------DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                      R     LL  Y+   F+++        +LT RE++ L  +  G ++ +I
Sbjct: 119 GEIINGQNWLPRHVSSQLLHYYRY-AFQTHQTQAT--VDLTAREIQILRCLQTGASNMQI 175

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV +++  I +K   K R  AIA+ V  N++
Sbjct: 176 AESLFISEFTVKSHLYQIFKKLNVKNRVKAIAW-VNQNLL 214


>gi|171320528|ref|ZP_02909554.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171094221|gb|EDT39302.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 230

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G   A    M    D  + +   LT R+ + L  ++EGK++ +I  +L ++  T+ N++ 
Sbjct: 135 GATQARPGGMPAGDDRAFER---LTPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLY 191

Query: 223 SIMRKTATKTRSGAIAYAVRN 243
           ++ R+     R+ A  +  R+
Sbjct: 192 ALFRQIGVSNRTEAALWLARH 212


>gi|149203886|ref|ZP_01880855.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
 gi|149143003|gb|EDM31045.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
          Length = 202

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 10/171 (5%)

Query: 76  SIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
            +   + PF LV   + +   D    +        CPV                      
Sbjct: 40  DVQEKNGPFQLVLLDLMMPGMDSLTGLGVMKARAKCPVA---------ILSGTATAEIGR 90

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
             +     G +      + ++      +        +  ++ +        LT RE + L
Sbjct: 91  RALRSGAAGFLPKTLDPQSLVAAVHHMLLGETYTPLDFLETGESEAEGPVRLTPRETDVL 150

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             I  GK++ EIA  L I   TV  ++ ++ RK   K R+ A   A    +
Sbjct: 151 VGILHGKSNKEIARDLDIQEVTVKLHLKTLSRKLGAKNRTHAAMIARDMGL 201


>gi|17987865|ref|NP_540499.1| transcriptional regulatory protein DEGU [Brucella melitensis bv. 1
           str. 16M]
 gi|23501247|ref|NP_697374.1| LuxR family DNA-binding response regulator [Brucella suis 1330]
 gi|148559651|ref|YP_001258379.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC
           25840]
 gi|161618323|ref|YP_001592210.1| two component LuxR family transcriptional regulator [Brucella canis
           ATCC 23365]
 gi|163842630|ref|YP_001627034.1| two component LuxR family transcriptional regulator [Brucella suis
           ATCC 23445]
 gi|225626863|ref|ZP_03784902.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo]
 gi|225851885|ref|YP_002732118.1| LuxR family two component transcriptional regulator [Brucella
           melitensis ATCC 23457]
 gi|254701158|ref|ZP_05162986.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 5 str. 513]
 gi|254703704|ref|ZP_05165532.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 3 str. 686]
 gi|254707920|ref|ZP_05169748.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M163/99/10]
 gi|254709500|ref|ZP_05171311.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis B2/94]
 gi|254713082|ref|ZP_05174893.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M644/93/1]
 gi|254716565|ref|ZP_05178376.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M13/05/1]
 gi|256030994|ref|ZP_05444608.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M292/94/1]
 gi|256044064|ref|ZP_05446975.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060484|ref|ZP_05450655.1| two component transcriptional regulator, LuxR family protein
           [Brucella neotomae 5K33]
 gi|256112861|ref|ZP_05453782.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|256159043|ref|ZP_05456876.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M490/95/1]
 gi|256254397|ref|ZP_05459933.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti B1/94]
 gi|256264603|ref|ZP_05467135.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256368799|ref|YP_003106305.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260168126|ref|ZP_05754937.1| DNA-binding response regulator, LuxR family protein [Brucella sp.
           F5/99]
 gi|260563426|ref|ZP_05833912.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260567044|ref|ZP_05837514.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|261218363|ref|ZP_05932644.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261221562|ref|ZP_05935843.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94]
 gi|261315409|ref|ZP_05954606.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317025|ref|ZP_05956222.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261320788|ref|ZP_05959985.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324478|ref|ZP_05963675.1| two component LuxR family transcriptional regulator [Brucella
           neotomae 5K33]
 gi|261751695|ref|ZP_05995404.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261754348|ref|ZP_05998057.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261757583|ref|ZP_06001292.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|265988062|ref|ZP_06100619.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265990479|ref|ZP_06103036.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994307|ref|ZP_06106864.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265997525|ref|ZP_06110082.1| two component LuxR family transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|294851727|ref|ZP_06792400.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|306842393|ref|ZP_07475048.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2]
 gi|306844978|ref|ZP_07477559.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1]
 gi|17983597|gb|AAL52763.1| two-component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23347130|gb|AAN29289.1| DNA-binding response regulator, LuxR family [Brucella suis 1330]
 gi|148370908|gb|ABQ60887.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC
           25840]
 gi|161335134|gb|ABX61439.1| two component transcriptional regulator, LuxR family [Brucella
           canis ATCC 23365]
 gi|163673353|gb|ABY37464.1| two component transcriptional regulator, LuxR family [Brucella suis
           ATCC 23445]
 gi|225618520|gb|EEH15563.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo]
 gi|225640250|gb|ACO00164.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis ATCC 23457]
 gi|255998957|gb|ACU47356.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260153442|gb|EEW88534.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156562|gb|EEW91642.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260920146|gb|EEX86799.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94]
 gi|260923452|gb|EEX90020.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293478|gb|EEX96974.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296248|gb|EEX99744.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300458|gb|EEY03955.1| two component LuxR family transcriptional regulator [Brucella
           neotomae 5K33]
 gi|261304435|gb|EEY07932.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737567|gb|EEY25563.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|261741448|gb|EEY29374.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261744101|gb|EEY32027.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262551993|gb|EEZ07983.1| two component LuxR family transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|262765420|gb|EEZ11209.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001263|gb|EEZ13838.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094966|gb|EEZ18674.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660259|gb|EEZ30520.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294820316|gb|EFG37315.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|306274610|gb|EFM56399.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1]
 gi|306287481|gb|EFM58951.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2]
 gi|326408384|gb|ADZ65449.1| LuxR family two component transcriptional regulator [Brucella
           melitensis M28]
 gi|326538098|gb|ADZ86313.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis M5-90]
          Length = 213

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +    +   L+ RE + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G 
Sbjct: 140 ESGEKRSEGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGL 199

Query: 237 IAYAVRNNI 245
             YA+ N +
Sbjct: 200 TRYAIENRL 208


>gi|116628047|ref|YP_820666.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101324|gb|ABJ66470.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus
           thermophilus LMD-9]
          Length = 200

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +     +  L+ RE E L  +++G T+ EIA  L +S  TV NY+ +
Sbjct: 117 VLAGQKEYSPELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTA 176

Query: 224 IMRKTATKTRSGAIAYA 240
           I+ K     R+ A+  A
Sbjct: 177 ILTKLDAGNRTEAVRIA 193


>gi|304439372|ref|ZP_07399284.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372154|gb|EFM25748.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 208

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 173 FKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            K+ +V  G  K  +LT RE++ L  ++ G  +DEIA  LGIS NTV  +I  ++ KT  
Sbjct: 129 IKTPEVKLGMTKSTDLTPREIQVLRLLTTGVGNDEIAESLGISLNTVKTHIQHLLDKTGF 188

Query: 231 KTRSGAIAYAVRNNIV 246
            +R+     A     V
Sbjct: 189 TSRTQLAIQARVTGFV 204


>gi|296159395|ref|ZP_06842220.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295890379|gb|EFG70172.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 493

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISE 199
              LL  + R    D       ++A   +   S +    +  +   L+ RE E L  IS 
Sbjct: 387 AAALLTEQARAGRFDAEVVKATVSAELGDCRASVEDDRARSPKTGLLSPREAEVLKHISL 446

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ E+A  L +S +TV  ++ S+ RK    TR+ A   A     +
Sbjct: 447 GASNKEVARALELSPSTVRTHVESVFRKLECSTRAAATLKASALGYI 493


>gi|239941299|ref|ZP_04693236.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239987762|ref|ZP_04708426.1| two component system response regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291444739|ref|ZP_06584129.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291347686|gb|EFE74590.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 222

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 56/172 (32%), Gaps = 5/172 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  + +      L +   +    +                +     
Sbjct: 50  DVVLMDIRMPGVDGLEATRRIAGDRSLDQVRVVMLTTYQVDAYVFEALRHGAAGFLLKDI 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
           +   +R  +  +     ++       +      +    K+ +    +    LTGRE E +
Sbjct: 110 EPDDLRSAIRTVAAGRSLLAPAVTRRV----IEEFARLKAPEAAGAERLAVLTGREREVM 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G +++EI   L +S  T   +++  M K   + R+  +  A    +V
Sbjct: 166 ALVAAGLSNEEIGRALIMSPLTAKTHVSRTMTKLGARDRAQLVVMAYETGLV 217


>gi|296138380|ref|YP_003645623.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026514|gb|ADG77284.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 212

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 79/222 (35%), Gaps = 18/222 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R+  +D    +   +  L +       +G +   +    L ++++   ++        
Sbjct: 1   MIRVGVVDDQAMFRSGLSMLIDSQADMENIGEAADGVEACALVRDKRPQVLLMD------ 54

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR   +   +    ++  P      +  T   +      M+          ++ +     
Sbjct: 55  VRMPNIDGIEATAQIMTEPDPPAIIMLTTFDHDEAVARAMEAGAAGFLLKESQPQ----F 110

Query: 147 LFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSD 204
           +    R +    +      A +  A+   S   H   +F  LT RE +     +EG ++ 
Sbjct: 111 VLAAIRDVAAGNMVVAASAARHLFAHPRPSTAPHRPVEFGRLTEREQQIFVRAAEGLSNA 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA    ++  TV  +++ ++ K   + R   + YA R+ +V
Sbjct: 171 EIAEKEFLAETTVKTHVSRVLTKLGLRDRVQLVVYAHRHGLV 212


>gi|254446876|ref|ZP_05060351.1| transcriptional regulator, LuxR family, putative [Verrucomicrobiae
           bacterium DG1235]
 gi|198256301|gb|EDY80610.1| transcriptional regulator, LuxR family, putative [Verrucomicrobiae
           bacterium DG1235]
          Length = 58

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 30/51 (58%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L WI EGKT+ +I  IL IS  TV  +  SI RK   + R  AI +A+ +N
Sbjct: 2   LFWIVEGKTNGDIGRILEISPRTVEKHCESIFRKLGIENRYAAIVFALTSN 52


>gi|157960462|ref|YP_001500496.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845462|gb|ABV85961.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC
           700345]
          Length = 224

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 14/172 (8%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           S    F LV     +       ++        PV  +    E ++  A +      L F+
Sbjct: 43  SHSNCFYLVSQQGAALDINGIPLVASQLVKHVPVALYQVEREGLSAEAALLQGIRGLLFN 102

Query: 137 VARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFE-------LTG 188
             R    + LL    R +L D LW +  L++     +     +      E       LT 
Sbjct: 103 NER----MDLLLTGLRKMLSDELWFDRPLMSKVLRQLVNKMGISESLTSEASESLEGLTN 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           RE   +  +S G  + EIA  L IS +TV  +I+SI RKT  + R   + +A
Sbjct: 159 REKTIIQLVSSGARNKEIADKLCISEHTVKAHISSIFRKTQARNRVELLRWA 210


>gi|59712516|ref|YP_205292.1| DNA-binding response regulator in two-component regulatory system
           with NarQ [Vibrio fischeri ES114]
 gi|59480617|gb|AAW86404.1| DNA-binding response regulator in two-component regulatory system
           with NarQ [Vibrio fischeri ES114]
          Length = 203

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L++ +      +       +       K  +LT RE+E L  +++G  + ++A  L I
Sbjct: 113 ALLKEAMKGGKAYSEQVKTCLEEDAQGDDKLSQLTARELEILQHVAKGMRNKQVADKLFI 172

Query: 213 SRNTVNNYIASIMRKTATKTRSGA 236
           S  TV  ++ S+++K   K+R  A
Sbjct: 173 SEATVKVHMKSLLKKLNVKSRVAA 196


>gi|329946695|ref|ZP_08294107.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526506|gb|EGF53519.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 254

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                G    LTGRE   L  + +G ++ +I   L ++ +TV +++ +I+ KT    R  
Sbjct: 181 VGAPAGPYDPLTGREEAVLALVCQGLSNAQIGERLHVAESTVKSHVKTILGKTGCHNRVE 240

Query: 236 AIAYAVRNNIV 246
            + YA+   +V
Sbjct: 241 LVIYALTTGLV 251


>gi|325000569|ref|ZP_08121681.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Pseudonocardia
           sp. P1]
          Length = 101

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
              A + +S          L+ RE E L  + EG T+ +IA  L +S  TV N++  ++R
Sbjct: 22  GLAAVVLESVAAPAVAVPALSPRESEVLRLVVEGLTAKQIAGRLVLSPRTVENHVQRLLR 81

Query: 227 KTATKTRSGAIAYAVRNNI 245
           K     R   +  A+ + +
Sbjct: 82  KFGVPGRGALVRRAIEHGL 100


>gi|313836389|gb|EFS74103.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928854|gb|EFS92685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971268|gb|EFT15366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906399|gb|EGG26174.1| putative two-component response regulator [Propionibacterium sp.
           P08]
          Length = 224

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 20/185 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + +R  +         + ++ P   +  +   + D+Y             V   L    +
Sbjct: 56  MDIRMPVLDGLGATEKIMTNHPEAKILVLTTFDLDEY-------------VHSALRAGAS 102

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                D     L   +  +R G  ++ P     L +R      +           D+   
Sbjct: 103 GFMLKDAGPTELLAAIRAVRDGDSVVAPSATRRLIER-----FIPRQCEGAPAMTDLKLV 157

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A 
Sbjct: 158 E--TLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAY 215

Query: 242 RNNIV 246
              +V
Sbjct: 216 DAGLV 220


>gi|320106955|ref|YP_004182545.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319925476|gb|ADV82551.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 208

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  +S G ++  +A  L IS +TV  ++ SI+ K     R+ A+  AV+   
Sbjct: 146 LSEREIQVLREVSAGSSNKSVADKLFISEDTVKGHMKSILAKLQANDRTHAVMIAVKRGF 205

Query: 246 V 246
           +
Sbjct: 206 I 206


>gi|298241309|ref|ZP_06965116.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554363|gb|EFH88227.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++  T+ EI   L +S  TV N++++I  K    TR+ AI  A    
Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLALSPKTVRNHVSNIFSKLQVATRAQAIIRAREAG 217


>gi|239930346|ref|ZP_04687299.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291438691|ref|ZP_06578081.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341586|gb|EFE68542.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 219

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D        +T RE E L  ++EG TS +IA +L IS  TV  + A+++ K   K R 
Sbjct: 146 ARDGRNLPPKAITDREEEILKLVAEGNTSQQIADLLVISPKTVERHRANLLSKLGLKDRL 205

Query: 235 GAIAYAVRNNIV 246
               YA+R  ++
Sbjct: 206 ELTRYAIRVGLI 217


>gi|257067784|ref|YP_003154039.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256558602|gb|ACU84449.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 238

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQAN 171
           F      +   A   + Y   T D  RI   +  +     ++       +   L    + 
Sbjct: 105 FDLDEYVLGALAAGADGYLVKTEDPQRILAAVRDVHRGDAVLSAAATRAVVAELRGRASG 164

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +     G +   T RE + L  +++G+T+ +IA  L +   TV ++++  + K    
Sbjct: 165 HPAAGRSAVGPEPPFTRREEDVLALVAQGRTNQQIARELFVEVTTVKSHLSHALVKLQLD 224

Query: 232 TRSGAIAY 239
           +R  A  +
Sbjct: 225 SRVQAALW 232


>gi|171909690|ref|ZP_02925160.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 212

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 13/170 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPP----AGMDNR 129
             + ++ P  ++  + L          VL++       +  T+ E+            + 
Sbjct: 44  RQIPTNPPDVVLMDIQLPGMSGIECVAVLKKRLPDMEFIMLTVYEDAERIFRALKAGASG 103

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   +    +       LF   R +          +A      F+       +  +L+ R
Sbjct: 104 YLVKSSAPEK-------LFEAIRDVHSGGAQFSAHIARRVVQYFRGPTKPVDESEKLSPR 156

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E E +  ++ G    EIA  LGI   TV  Y+ +I  K   K R+ A+A 
Sbjct: 157 EGEVIELLASGYIYKEIADKLGIGTETVRTYVKNICVKLRVKNRTEAVAK 206


>gi|73537995|ref|YP_298362.1| LuxR transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72121332|gb|AAZ63518.1| regulatory protein, LuxR:Tetratricopeptide TPR_4 [Ralstonia
           eutropha JMP134]
          Length = 960

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 157 DRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +RL     +L    +   +S D       EL+ RE + +  +++   + +IA  LG+S  
Sbjct: 867 ERLQAAAQVLPQMASGNTESTDHALAGQEELSDREADVVRLLAQALPNKKIARTLGLSPE 926

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TV  ++ +I RK    +R  A+A      +
Sbjct: 927 TVKWHLRNIFRKLNVSSRDEAVARMRDRGL 956


>gi|331653626|ref|ZP_08354627.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M718]
 gi|331048475|gb|EGI20551.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M718]
          Length = 225

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    L +R             
Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLHER------------- 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 152 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 210 SRVAATILFLQQR 222


>gi|324006555|gb|EGB75774.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 57-2]
          Length = 223

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 15/125 (12%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G  +   +    LR+R             
Sbjct: 105 VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLRER------------- 151

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 152 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 209

Query: 232 TRSGA 236
           +R  A
Sbjct: 210 SRVAA 214


>gi|229494564|ref|ZP_04388327.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
 gi|229318926|gb|EEN84784.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
          Length = 217

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 69/203 (33%), Gaps = 12/203 (5%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ------ 103
             + + + A+  ++V  +     ++ + V+   P  ++  + ++         +      
Sbjct: 20  RGMKDILEAAPDIVVVAEAEDGDQVAAKVTRFRPHVVLMDLKMARVGGLEATRELMIMSN 79

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
            P  +    F      +       + + S        +  + ++     +   D L  I 
Sbjct: 80  PPKVIAMTAFDVDDMVVQAVEAGAHSFLSKDAAPQAFQQAVRVVASDHSLFSSDSLRAI- 138

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                 A+  +           LT RE E LT ++ G  +  IA  L +  +TV  +I+S
Sbjct: 139 -----VASAPRRQAPDLTPLASLTEREREVLTILATGAANSVIAERLYLGESTVKTHISS 193

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +  K     R  A   A R  +V
Sbjct: 194 LFAKLGVPNRVSASLIAFRCGLV 216


>gi|197335139|ref|YP_002156737.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri
           MJ11]
 gi|197316629|gb|ACH66076.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri
           MJ11]
          Length = 203

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L++ +      +       +       K  +LT RE+E L  +++G  + ++A  L I
Sbjct: 113 ALLKEAMKGGKAYSEQVKACLEEDAQGDDKLSQLTARELEILQHVAKGMRNKQVADQLFI 172

Query: 213 SRNTVNNYIASIMRKTATKTRSGA 236
           S  TV  ++ S+++K   K+R  A
Sbjct: 173 SEATVKVHMKSLLKKLNVKSRVAA 196


>gi|194291957|ref|YP_002007864.1| response regulator protein [Cupriavidus taiwanensis LMG 19424]
 gi|193225861|emb|CAQ71807.1| Response regulator protein; Response regulator receiver domain, HTH
           LuxR domain; higly similar to B. subtilis
           Transcriptional regulatory protein degU (Protease
           production enhancer protein) [Cupriavidus taiwanensis
           LMG 19424]
          Length = 223

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 15/193 (7%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-----LF 109
            + A+  + V       ++   +     P  +V  + + + +      +   +     + 
Sbjct: 23  RLEATGEMTVIGQAASVEEAIVLAGRHAPDLVVSDIHMPDANGLQLAARFAEQFPSVRVI 82

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
               H  PE +     +      L    A   +  +     G   L   L          
Sbjct: 83  ALSMHKDPEYVRRAFALGVAAYVLKEAPAHELVTAIRTVAAGGTYLNAELQAF------- 135

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                + +        LT +E   L  ++EG+++ EIA  LG S  TV  +   + RK  
Sbjct: 136 ---LHTDEPPPSSRRALTPKEATVLKLLAEGRSNKEIAERLGTSVRTVETHRLHLRRKLR 192

Query: 230 TKTRSGAIAYAVR 242
              R+  + YAV 
Sbjct: 193 VGGRAELVKYAVH 205


>gi|254240101|ref|ZP_04933423.1| hypothetical protein PA2G_00741 [Pseudomonas aeruginosa 2192]
 gi|126193479|gb|EAZ57542.1| hypothetical protein PA2G_00741 [Pseudomonas aeruginosa 2192]
          Length = 901

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 2/115 (1%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           SL  +       L+            + +  GLL  +     +       +   LT RE 
Sbjct: 789 SLFIEEGDGIRQLLQQLESTERQPALQTFIRGLLGIWPGQGVRKPQDALEE--GLTERER 846

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +   ++G +++EI   L ++  TV  ++ +I  K   + R+ AI  A   +++
Sbjct: 847 EVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQAIRRARELSLL 901


>gi|161521689|ref|YP_001585116.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352145|ref|YP_001947772.1| transcriptional regulator [Burkholderia multivorans ATCC 17616]
 gi|221210733|ref|ZP_03583713.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
 gi|160345739|gb|ABX18824.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336167|dbj|BAG45236.1| transcriptional regulator [Burkholderia multivorans ATCC 17616]
 gi|221169689|gb|EEE02156.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
          Length = 510

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 1/117 (0%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189
                D++  +   M L       ++D  W    L    AN+ ++     G    +LT R
Sbjct: 375 LIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTAR 434

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    IV
Sbjct: 435 ERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|111223193|ref|YP_713987.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111150725|emb|CAJ62426.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 211

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 41/96 (42%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I   R      +        +       K   L  RE + L  I+EG T+ +I
Sbjct: 113 LVGAIRTIAAGRSLLDPAVTQRVLTRLREGPAEDRKLAALGERERQILVLIAEGLTNRQI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           A  + +S  TV NY+++I+ K    +R+ A  YA R
Sbjct: 173 AGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 208


>gi|296389855|ref|ZP_06879330.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110448|ref|ZP_07796333.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882835|gb|EFQ41429.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 856

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 2/115 (1%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           SL  +       L+            + +  GLL  +     +       +   LT RE 
Sbjct: 744 SLFIEEGDGIRQLLQQLESTERQPALQTFIRGLLGIWPGQGVRKPQDALEE--GLTERER 801

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +   ++G +++EI   L ++  TV  ++ +I  K   + R+ AI  A   +++
Sbjct: 802 EVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQAIRRARELSLL 856


>gi|56460314|ref|YP_155595.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56179324|gb|AAV82046.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           loihiensis L2TR]
          Length = 207

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDFELTGREVECL 194
           +  G+    PK     + +L    LL   +      ++ +  D   G +  L+ R++E +
Sbjct: 93  LAAGVRSYLPKDSSAEQAKLAIRALLNGDRHIPDDPHLNEPRDKSSGAESFLSPRQLEIM 152

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +++G ++ EIA ILGI+  T+  ++++I +      R+ A  +
Sbjct: 153 QLLAQGLSNKEIANILGITEGTIRVHLSAIFKAIKVSNRTEATLW 197


>gi|86142105|ref|ZP_01060629.1| two-component response regulator [Leeuwenhoekiella blandensis
           MED217]
 gi|85831668|gb|EAQ50124.1| two-component response regulator [Leeuwenhoekiella blandensis
           MED217]
          Length = 216

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 5/140 (3%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLA 166
           +   VF              + Y         +  G+      G  +     +  + LL 
Sbjct: 81  IMLTVFDNDEHIFNAIKAGADGYLLKETSPDILEKGIRETLSGGAAMNPSIAMRTLKLLR 140

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             ++      ++   ++  L+ REVE L  +S+G +  +IA  L +S +TV  +I +I +
Sbjct: 141 NPESI----SNLQEREEISLSSREVEVLEQLSKGLSYTKIAENLFLSPSTVRKHIENIYK 196

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    ++  A+  A +NNI+
Sbjct: 197 KLQVHSKIEAVEKARQNNII 216


>gi|302039113|ref|YP_003799435.1| putative sensory transcriptional regulator, LuxR family [Candidatus
           Nitrospira defluvii]
 gi|300607177|emb|CBK43510.1| putative Sensory transcriptional regulator, LuxR family [Candidatus
           Nitrospira defluvii]
          Length = 235

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             L  RE E L  ++ GK+  +IA +L IS  TV N+I  I+ K    +R  A+A A 
Sbjct: 169 LPLGEREREILRGLAAGKSGKDIADLLCISPVTVRNHIQHILEKLGAHSRLQALAIAF 226


>gi|228955601|ref|ZP_04117601.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229193605|ref|ZP_04320549.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228589910|gb|EEK47785.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228804077|gb|EEM50696.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 189

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|152997016|ref|YP_001341851.1| two component LuxR family transcriptional regulator [Marinomonas
           sp. MWYL1]
 gi|150837940|gb|ABR71916.1| two component transcriptional regulator, LuxR family [Marinomonas
           sp. MWYL1]
          Length = 217

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 4/134 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V     ++      +D          +     +  +      IL   +W    L    A+
Sbjct: 81  VISGSEDSAMVAKVIDAGALGFIPKTSEPATYVQAIH----AILAGDIWLPDDLRQEVAD 136

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K       K  ELT ++ + L ++ EG  + +IA  L IS  TV  +I +I RK    
Sbjct: 137 QPKPDLSMQHKVTELTPQQYKVLCYLHEGLLNKQIAYELSISEATVKAHITAIFRKLEIN 196

Query: 232 TRSGAIAYAVRNNI 245
            R+ A+  A    +
Sbjct: 197 NRTQAVLVASDLKL 210


>gi|114764851|ref|ZP_01444033.1| autoinducer-binding transcriptional regulator LuxR [Pelagibaca
           bermudensis HTCC2601]
 gi|114542737|gb|EAU45760.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           HTCC2601]
          Length = 223

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 17/179 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE----------NITPPAGMDNRYCSLT 134
           D +         +   V+Q   + F PV     +                G+ N+  ++ 
Sbjct: 43  DWLARYVAQGYLRVDPVIQGCFQRFHPVDWKALDWSSKAARAFLKDALRHGLGNQGFTVP 102

Query: 135 FDVARIRIGLMLLFPKGRIILRDRL---WEIGLLAAYQANMFKSYDVHWGK----DFELT 187
                 +  L  +       L       W   L+ A      K+ ++  G        L+
Sbjct: 103 IRGPNGQFALFTVNHGCEDALWSSFIAQWRAELILAAHGINAKALELMPGPASQAPVALS 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  ++ G +  ++A  L IS +TV  YI     K      + A+A A+   ++
Sbjct: 163 PRELDAMRLLASGLSRAQVAAELNISEHTVRVYIEGARFKLGALNTTHAVARAMSCGLI 221


>gi|119387044|ref|YP_918099.1| response regulator receiver protein [Paracoccus denitrificans
           PD1222]
 gi|119377639|gb|ABL72403.1| response regulator receiver protein [Paracoccus denitrificans
           PD1222]
          Length = 233

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 85/229 (37%), Gaps = 23/229 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           S  P R    A ++ +    +++  + ++T      H  +     F + +  S ++ + P
Sbjct: 17  SDQPARG--TAEILFVGTQCNFSHSLISVTSQ-ELGHITVAAASSFNDFRSLSELTHERP 73

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             LV        +     L R    +      +   +    G   R C    ++ R    
Sbjct: 74  TLLVLD------EPTMRGLTREDRTYLLGLTDMALAVAFCTGAFGRACYEDEELRRHATS 127

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFK--------SYDVHWGKDFELTGREVECLT 195
           +  L  +  +     L  I L+A     +F         +  V    +  LT R+ + L 
Sbjct: 128 IFPLNVRLDV----WLSVIKLVAHGGNYIFPEIISPVGVAMPVPATDELGLTRRQQDVLR 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA--YAVR 242
            +++G+++  IA+ LG+S +TV  ++ +   +     R+ A     A+R
Sbjct: 184 LVADGQSNKRIALSLGLSVHTVKLHLRNASLRLGAHNRTEAAMRYRALR 232


>gi|307277198|ref|ZP_07558302.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2134]
 gi|306506128|gb|EFM75294.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2134]
          Length = 197

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   +EG    EIA  L ISR TVNN++ SI  K    +   AI  A+   I
Sbjct: 132 LSKREKEILKCAAEGFKQQEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQAIELGI 191

Query: 246 V 246
           +
Sbjct: 192 I 192


>gi|296388063|ref|ZP_06877538.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 827

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  I++G ++ EI   L IS +TV  +   I  K     R+ A+A A    
Sbjct: 765 PLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALG 824

Query: 245 IV 246
           ++
Sbjct: 825 LL 826


>gi|228903831|ref|ZP_04067946.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228855740|gb|EEN00285.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 189

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|228949073|ref|ZP_04111345.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810646|gb|EEM56995.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 189

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|228968483|ref|ZP_04129471.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791189|gb|EEM38803.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 189

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|229033988|ref|ZP_04188939.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228728327|gb|EEL79352.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 189

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|221197390|ref|ZP_03570437.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
 gi|221204064|ref|ZP_03577082.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221176230|gb|EEE08659.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221183944|gb|EEE16344.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
          Length = 510

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 1/117 (0%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189
                D++  +   M L       ++D  W    L    AN+ ++     G    +LT R
Sbjct: 375 LIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTAR 434

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    IV
Sbjct: 435 ERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|218890380|ref|YP_002439244.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218770603|emb|CAW26368.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 827

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  I++G ++ EI   L IS +TV  +   I  K     R+ A+A A    
Sbjct: 765 PLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALG 824

Query: 245 IV 246
           ++
Sbjct: 825 LL 826


>gi|194434215|ref|ZP_03066482.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012]
 gi|194417544|gb|EDX33646.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012]
 gi|320178834|gb|EFW53797.1| Nitrate/nitrite response regulator protein [Shigella boydii ATCC
           9905]
 gi|332093180|gb|EGI98240.1| response regulator [Shigella boydii 5216-82]
 gi|332096195|gb|EGJ01198.1| response regulator [Shigella dysenteriae 155-74]
          Length = 215

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          D+    L   +     G      +    LR+R             
Sbjct: 95  VFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKAFSERVNQYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    ++  
Sbjct: 200 SRVAATILFLQQR 212


>gi|107102954|ref|ZP_01366872.1| hypothetical protein PaerPA_01004023 [Pseudomonas aeruginosa PACS2]
          Length = 827

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  I++G ++ EI   L IS +TV  +   I  K     R+ A+A A    
Sbjct: 765 PLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALG 824

Query: 245 IV 246
           ++
Sbjct: 825 LL 826


>gi|86740955|ref|YP_481355.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86567817|gb|ABD11626.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 224

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 41/96 (42%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I   R      +        +       K   L  RE + L  I+EG T+ +I
Sbjct: 126 LVGAIRTIAAGRSLLDPAVTQRVLTRLREGPAEDRKLATLGERERQILVLIAEGLTNRQI 185

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           A  + +S  TV NY+++I+ K    +R+ A  YA R
Sbjct: 186 AGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 221


>gi|254242106|ref|ZP_04935428.1| hypothetical protein PA2G_02835 [Pseudomonas aeruginosa 2192]
 gi|126195484|gb|EAZ59547.1| hypothetical protein PA2G_02835 [Pseudomonas aeruginosa 2192]
          Length = 827

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  I++G ++ EI   L IS +TV  +   I  K     R+ A+A A    
Sbjct: 765 PLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALG 824

Query: 245 IV 246
           ++
Sbjct: 825 LL 826


>gi|332306797|ref|YP_004434648.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174126|gb|AEE23380.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 215

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   LT +++GK+S EIA IL IS  TV  +  ++  K   ++ +  I YAV + 
Sbjct: 152 KLTTREQLILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLAELICYAVDHG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|328884073|emb|CCA57312.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 206

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +       LT RE + L  +  G  + EIA  L IS  TV  ++  I  K    TR+GA+
Sbjct: 137 MRGAAGPSLTDRERDILGQLGRGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAV 196

Query: 238 AYAVRNNIV 246
           A A    ++
Sbjct: 197 AVAKERRLL 205


>gi|328880752|emb|CCA53991.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 227

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  + +      L     +    F              + +     
Sbjct: 55  DVVLMDIRMPRLDGLEATRRITDDPGLTDVRVVMLTTFELDEYVFEAIRAGASGFLVKDT 114

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+  + A               LT RE E + 
Sbjct: 115 EPEELLRAVRAVVDGDALLSPGVTRR--LIEEFAARSKAPG--AAASLGALTEREREVMA 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G ++ EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 171 LVGIGLSNGEIARRLVVSPLTAKTHVSRAMVKLGARDRAQLVVLAYESGLV 221


>gi|312863667|ref|ZP_07723905.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
 gi|311101203|gb|EFQ59408.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
          Length = 200

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +     +  L+ RE E L  +++G T+ EIA  L +S  TV NY+ +
Sbjct: 117 VLAGQKEYSPELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTA 176

Query: 224 IMRKTATKTRSGAIAYA 240
           I+ K     R+ A+  A
Sbjct: 177 ILTKLDAGNRTEAVRIA 193


>gi|196231080|ref|ZP_03129940.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224910|gb|EDY19420.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 22/135 (16%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +          + R   +   +  +  G     P+   IL  R+            
Sbjct: 94  VFRAVQAGAESYLLKNARRTEIVTAIRTVHAGSPYFPPEISAILAARMRR---------- 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        ELT RE   L  I +G ++ EI   L I+ + V  ++  +++K   K
Sbjct: 144 ------------EELTPREKSVLFEIVKGSSNKEIGCCLEITESAVKIHVTHLLQKLNAK 191

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   A++  IV
Sbjct: 192 DRTHAATIAIQRGIV 206


>gi|107101190|ref|ZP_01365108.1| hypothetical protein PaerPA_01002222 [Pseudomonas aeruginosa PACS2]
          Length = 856

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 2/115 (1%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           SL  +       L+            + +  GLL  +     +       +   LT RE 
Sbjct: 744 SLFIEEGDGIRQLLQQLESTERQPALQTFIRGLLGIWPGQGVRKPQDALEE--GLTERER 801

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +   ++G +++EI   L ++  TV  ++ +I  K   + R+ AI  A   +++
Sbjct: 802 EVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQAIRRARELSLL 856


>gi|116051440|ref|YP_789727.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586661|gb|ABJ12676.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 827

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  I++G ++ EI   L IS +TV  +   I  K     R+ A+A A    
Sbjct: 765 PLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALG 824

Query: 245 IV 246
           ++
Sbjct: 825 LL 826


>gi|68249325|ref|YP_248437.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           86-028NP]
 gi|145628395|ref|ZP_01784196.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.1-21]
 gi|145638479|ref|ZP_01794089.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittII]
 gi|68057524|gb|AAX87777.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           86-028NP]
 gi|144980170|gb|EDJ89829.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.1-21]
 gi|145272808|gb|EDK12715.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittII]
 gi|309751610|gb|ADO81594.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R2866]
 gi|309973777|gb|ADO96978.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R2846]
          Length = 208

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           LL+       + +  +V  D  F++V  ++   +     +   P   +       L    
Sbjct: 8   LLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGLD 67

Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-----------RLWEIGLL 165
           T       G+D R   LT   A+  I  ++       +L+D           R+ +  ++
Sbjct: 68  TLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLDQIKRIAQGEVI 127

Query: 166 AAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            +           H     + LT RE+  L  I+ G ++ +IA  L IS  TV  +I ++
Sbjct: 128 LSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNL 187

Query: 225 MRKTATKTRSGAIA 238
           +RK    +R  A  
Sbjct: 188 LRKLNVHSRVAATV 201


>gi|322516517|ref|ZP_08069435.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322124986|gb|EFX96400.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 200

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L  ++    +  +     +  L+ RE E L  +++G T+ EIA  L +S  TV NY+ +
Sbjct: 117 VLVGHKEYSPELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTA 176

Query: 224 IMRKTATKTRSGAIAYA 240
           I+ K     R+ A+  A
Sbjct: 177 ILTKLNAGNRTEAVRIA 193


>gi|317405260|gb|EFV85592.1| LuxR family Two component transcriptional regulator [Achromobacter
           xylosoxidans C54]
          Length = 210

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 35/73 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S          L+ RE + L  ++EG  + EIA  L +SR TV  +I  I RK A  +R
Sbjct: 137 PSQPATADAGETLSPREGQILRLVAEGLGNREIAEQLHLSRYTVECHIKHIYRKLAVSSR 196

Query: 234 SGAIAYAVRNNIV 246
           + AI  A    ++
Sbjct: 197 TRAIHTARSRGLL 209


>gi|313835697|gb|EFS73411.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928368|gb|EFS92199.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970220|gb|EFT14318.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
          Length = 228

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 3/163 (1%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV--AR 139
            P  ++  + +  +D    + Q        +     +       MD              
Sbjct: 59  QPDVILLDIRMPRRDGLSVLSQLAAGSTVIMTTFTDDAGAIRRAMDEGAAGYLVHGTFDA 118

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
             +G M+   K  ++    +    L           +     ++  L+ R+ E +  I+ 
Sbjct: 119 HALGHMIRSAKAGVMPVAPMVMSALAGRGHGTQIGRF-PGIRRNMGLSDRQAEVMDLIAA 177

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           G+++ EI+  L ++  TV N+I  I       TR+ AI   ++
Sbjct: 178 GQSNKEISKTLFLAEKTVKNHINQIFATLGVTTRAQAIVLWLQ 220


>gi|303238514|ref|ZP_07325048.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593912|gb|EFL63626.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 215

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         + + +       R++ +D    I    + Q  M  S          L
Sbjct: 98  ADGYILKDIKPKELILAVKSAASGLRVLHKDAFPSIVKKVSDQRKM--SLIQKDELTNLL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE+E +  + +GK + +IA  L IS  TV N I+ I++K   + R     YAV+N+I
Sbjct: 156 TPREIEIINLVVDGKDNRDIANSLFISEGTVRNTISLILKKLNLRDRIQLAVYAVKNDI 214


>gi|260362480|ref|ZP_05775413.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus K5030]
 gi|260894575|ref|ZP_05903071.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus Peru-466]
 gi|308094902|ref|ZP_05892254.2| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AN-5034]
 gi|308086485|gb|EFO36180.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus Peru-466]
 gi|308092124|gb|EFO41819.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AN-5034]
 gi|308113367|gb|EFO50907.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus K5030]
          Length = 210

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANMFKS 175
                G + R   LT   +   I  ++       +L     D L E+ L  A+Q +   S
Sbjct: 70  ALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVEL-LKQAHQGDKAYS 128

Query: 176 YDV---------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +V         H      LT RE + L  ++ G  + +IA  L IS +TV  ++ S+++
Sbjct: 129 QEVAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLK 188

Query: 227 KTATKTRSGAIA 238
           K    +R+ A  
Sbjct: 189 KLQVPSRTAATV 200


>gi|291298136|ref|YP_003509414.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567356|gb|ADD40321.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 216

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 14/135 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D     L   V     G  L+ P               +     +
Sbjct: 93  VYGALRGGAVGFVLKDAGPVLLVEAVRAANAGNALISPS--------------ITLRLLS 138

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                      D  L+ RE+E +  I+ G+T+ E+A  L IS +TV ++++SI  K   +
Sbjct: 139 HLAPGAGEPEPDHRLSDRELEVVRAIAIGRTNQEVAAELFISLSTVKSHVSSIQAKLGAR 198

Query: 232 TRSGAIAYAVRNNIV 246
            R    A+A  + +V
Sbjct: 199 NRVAIAAWAWEHRVV 213


>gi|254488693|ref|ZP_05101898.1| DNA-binding response regulator, LuxR family [Roseobacter sp.
           GAI101]
 gi|214045562|gb|EEB86200.1| DNA-binding response regulator, LuxR family [Roseobacter sp.
           GAI101]
          Length = 233

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 149 PKGRIILRDRLWEIGL-----LAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKT 202
              R++ +D L  +        + Y         D +  +   LT ++   L  I EGK 
Sbjct: 123 HSQRLVFKDALARVKAGGIFTPSGYVDGREPDGSDANLARLASLTNQQYRILQLICEGKL 182

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A
Sbjct: 183 NKQIAFELSIAETTVKAHVTAIMRKLGVQSRTQAVLVA 220


>gi|238060480|ref|ZP_04605189.1| luxR-family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237882291|gb|EEP71119.1| luxR-family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 957

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 43/99 (43%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                +  + RL        + A           +   LT RE+E L  ++ G+++ +I 
Sbjct: 857 LGAESLSEQVRLLARSSNLPFGAQAEPRARTGELERRGLTDREIEVLHLVAAGRSNRQIG 916

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  T + ++++I+ K    +R  A A A R +++
Sbjct: 917 EQLFISAKTASVHVSNILAKLGVNSRGEASATAHRLHLL 955


>gi|227875828|ref|ZP_03993954.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
 gi|306819109|ref|ZP_07452823.1| two component system response regulator [Mobiluncus mulieris ATCC
           35239]
 gi|227843576|gb|EEJ53759.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
 gi|304648085|gb|EFM45396.1| two component system response regulator [Mobiluncus mulieris ATCC
           35239]
          Length = 229

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 3/140 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y + T     +   ++ +          RL    +L
Sbjct: 92  KFLALSVSDAAEDVVAVIRAGARGYVTKTISTPDLVDSIIRVAEGDAAFSP-RLAGF-VL 149

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ A   +  +     D  LT RE E +  I+ G    EIA  L IS  TV +++++++
Sbjct: 150 DAFGATRSEIVETDNELD-SLTSREFEVMRLIARGYAYKEIASELYISVKTVESHVSAVL 208

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RK     R     +A    I
Sbjct: 209 RKLQLSNRYELSRWAAERRI 228


>gi|29829419|ref|NP_824053.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606526|dbj|BAC70588.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 213

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 7/168 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRYCSLTFDV 137
           P  ++  + +   D      +   E    V      ++              +     + 
Sbjct: 48  PDLVLMDVQMPRLDGVSATRRVVAENLADVLVLTTFDLDEYVFGALRAGACGFLLKNTEA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +  +     +I         L+A + A   +           LT RE E L+ +
Sbjct: 108 RQLLEAVRTVARGEGLISPAVTRR--LIAEFAAKPVREPGPDPVILDVLTRREREVLSCL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G ++ EIA  L ++  TV  +++ ++ K   ++R  A   A    +
Sbjct: 166 GRGMSNAEIAARLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGV 213


>gi|15596956|ref|NP_250450.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116049709|ref|YP_791486.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|9947737|gb|AAG05148.1|AE004601_13 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115584930|gb|ABJ10945.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 901

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 2/115 (1%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           SL  +       L+            + +  GLL  +     +       +   LT RE 
Sbjct: 789 SLFIEEGDGIRQLLQQLESTERQPALQTFIRGLLGIWPGQGVRKPQDALEE--GLTERER 846

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +   ++G +++EI   L ++  TV  ++ +I  K   + R+ AI  A   +++
Sbjct: 847 EVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQAIRRARELSLL 901


>gi|322373180|ref|ZP_08047716.1| DNA-binding response regulator [Streptococcus sp. C150]
 gi|321278222|gb|EFX55291.1| DNA-binding response regulator [Streptococcus sp. C150]
          Length = 200

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +     +  L+ RE E L  +++G T+ EIA  L +S  TV NY+ +
Sbjct: 117 VLAGQKEYSPELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTA 176

Query: 224 IMRKTATKTRSGAIAYA 240
           I+ K     R+ A+  A
Sbjct: 177 ILTKLDAGNRTEAVRIA 193


>gi|297154246|gb|ADI03958.1| putative two-component regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 222

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 11/173 (6%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + +   D      +      R   L    F              + +      
Sbjct: 48  PDVVLMDIRMPGMDGLEATRRIVAAGGRTRVLIVTTFDLDEYAYEGLRAGASGFLLKDAR 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVEC 193
              +  G+  +     ++         LL AY   +    D H   D  L   + RE E 
Sbjct: 108 PEELVAGIHAVATGDAVVAPSLTRR--LLDAYAHRVLAPADAHAPADPRLRTLSDREREV 165

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I +G T+ EIA  L ++ +TV  ++  ++ K   + R  A+  A    +V
Sbjct: 166 LVAIGQGWTNTEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVIMAYDAGLV 218


>gi|294787163|ref|ZP_06752416.1| two-component system response regulator [Parascardovia denticolens
           F0305]
 gi|315227300|ref|ZP_07869087.1| two component system response regulator [Parascardovia denticolens
           DSM 10105]
 gi|294484519|gb|EFG32154.1| two-component system response regulator [Parascardovia denticolens
           F0305]
 gi|315119750|gb|EFT82883.1| two component system response regulator [Parascardovia denticolens
           DSM 10105]
          Length = 283

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +  I+ G T  E+A  L IS  TV  +++ ++RK     R     +A    I
Sbjct: 223 LTSRERQVMQLIARGYTYKEVASELFISIKTVETHVSRVLRKLQLSNRGELALWAAHQRI 282

Query: 246 V 246
           V
Sbjct: 283 V 283


>gi|302547743|ref|ZP_07300085.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302465361|gb|EFL28454.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 227

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 5/167 (2%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  ++  + L +        +R      P     P        M +    +   +     
Sbjct: 62  PDVVLMDLQLGDGMDGVEATRRLASGTGPTPPQEPAPRVLVLTMFDTDADIARAIEAGAT 121

Query: 143 GLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           G +L   +   +             L+A  A+   +          L+ RE + L  ++ 
Sbjct: 122 GYLLKAERPEELFAAIRNAAAGRTALSAPVADRLMA--QMRTPRPTLSERERDILQQLAR 179

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 180 GLGNREIARALFISEATVKTHLGRIYGKLGVDTRAGAVAVATGRRLL 226


>gi|329941697|ref|ZP_08290962.1| LuxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299414|gb|EGG43314.1| LuxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 11/124 (8%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             +       +   L   V  +  G  LL P     L  RL              ++ + 
Sbjct: 108 GASGYVLKQIKGSDLVSAVRTVARGQSLLDPSATTRLMARLR-----------GGQAKEE 156

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT RE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A  
Sbjct: 157 EPEALPGLTDREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAV 216

Query: 239 YAVR 242
            A +
Sbjct: 217 IATQ 220


>gi|328908051|gb|EGG27810.1| LuxR response regulator receiver [Propionibacterium sp. P08]
          Length = 221

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 3/163 (1%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV--AR 139
            P  ++  + +  +D    + Q        +     +       MD              
Sbjct: 52  QPDVILLDIRMPRRDGLSVLSQLAAGSTVIMTTFTDDAGAIRRAMDEGAAGYLVHGTFDA 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
             +G M+   K  ++    +    L           +     ++  L+ R+ E +  I+ 
Sbjct: 112 HALGHMIRSAKAGVMPVAPMVMSALAGRGHGTQIGRF-PGIRRNMGLSDRQAEVMDLIAA 170

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           G+++ EI+  L ++  TV N+I  I       TR+ AI   ++
Sbjct: 171 GQSNKEISKTLFLAEKTVKNHINQIFATLGVTTRAQAIVLWLQ 213


>gi|328885800|emb|CCA59039.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 197

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 3/147 (2%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
            + + P       F T    +T      + +     +  ++   +  L   G ++     
Sbjct: 41  TLPEPPHVAMLTTFDTDEYILTALRSGASGFLLKDTEPEQLAQLVRTLAAGGVVMSPKAS 100

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
                L           D    +   L+ RE + L  ++EG ++ +I   + +S  TV +
Sbjct: 101 R---ALLRSHPGAGAPQDADVSRVGLLSDRERDVLVLVAEGLSNADIGTRIHLSAGTVKD 157

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++SI+ K    +R  A   A R  ++
Sbjct: 158 HVSSILTKLRVSSRVQAALLAERAGLL 184


>gi|258626995|ref|ZP_05721793.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM603]
 gi|258580669|gb|EEW05620.1| Probable csgAB operon transcriptional regulatory protein [Vibrio
           mimicus VM603]
          Length = 214

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G ++ +IA  L IS  TV +++  I +K   K R  AIA+ V  
Sbjct: 153 VDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAW-VNQ 211

Query: 244 NIV 246
           N++
Sbjct: 212 NLL 214


>gi|166368457|ref|YP_001660730.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166090830|dbj|BAG05538.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 226

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 83/208 (39%), Gaps = 29/208 (13%)

Query: 54  EYVGASHFLLVRWDL------FQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQR 104
           +Y+    + +   +         E+  ++  +++ P  ++  + + E D +     + Q 
Sbjct: 26  DYLEFRGYRVTTAENGPEALEILERGANTAKAAEIPDMIICDLIMPEMDGHAFLEKIRQD 85

Query: 105 PTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
                 PV    P+      IT      + Y    F+   +   +     +   +L+   
Sbjct: 86  SRFSCIPVIFLSPKGQSQDKITGLITGADVYMVKPFEPEELVARVESSLKQAGRLLK--- 142

Query: 160 WEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                    ++    S DV   +   + ELT  E++ +  +++G  + EIA  L +S+ T
Sbjct: 143 ---------RSTRIHSPDVTPVQVQGNVELTPTELKVVQLVAQGLANREIAAKLNVSQRT 193

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + +++++++ KT    R+    +A+ +N
Sbjct: 194 IESHVSNMLHKTGLHNRTELSQWAIESN 221


>gi|254234854|ref|ZP_04928177.1| hypothetical protein PACG_00728 [Pseudomonas aeruginosa C3719]
 gi|126166785|gb|EAZ52296.1| hypothetical protein PACG_00728 [Pseudomonas aeruginosa C3719]
          Length = 901

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 2/115 (1%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           SL  +       L+            + +  GLL  +     +       +   LT RE 
Sbjct: 789 SLFIEEGDGIRQLLQQLESTERQPALQTFIRGLLGIWPGQGVRKPQDALEE--GLTERER 846

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +   ++G +++EI   L ++  TV  ++ +I  K   + R+ AI  A   +++
Sbjct: 847 EVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQAIRRARELSLL 901


>gi|239942985|ref|ZP_04694922.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989445|ref|ZP_04710109.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446458|ref|ZP_06585848.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291349405|gb|EFE76309.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 219

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 13/136 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170
           VF  L    +     D     L   V ++  G  LL P   R ++++ +    +      
Sbjct: 96  VFEALRVGASGFLLKDASPRQLDEAVRQVAHGEALLSPSVTRQLIQEFVRRPAV------ 149

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +S          LTGRE++    + +G  + EIA  L +  +T+ +++  + RK   
Sbjct: 150 ---RSSTTDLR---SLTGREIDVFRLLVQGYGNAEIARKLVLGESTIKSHVQHLYRKLGV 203

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+  + +A  N +V
Sbjct: 204 RDRAQVVIFAYENGLV 219


>gi|228988578|ref|ZP_04148665.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771195|gb|EEM19674.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 189

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|218892289|ref|YP_002441156.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218772515|emb|CAW28297.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 901

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 2/115 (1%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           SL  +       L+            + +  GLL  +     +       +   LT RE 
Sbjct: 789 SLFIEEGDGIRQLLQQLESTERQPALQTFIRGLLGIWPGQGVRKPQDALEE--GLTERER 846

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +   ++G +++EI   L ++  TV  ++ +I  K   + R+ AI  A   +++
Sbjct: 847 EVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQAIRRARELSLL 901


>gi|119469813|ref|ZP_01612651.1| putative csg operon transcription regulator (LuxR family) protein
           [Alteromonadales bacterium TW-7]
 gi|119446796|gb|EAW28068.1| putative csg operon transcription regulator (LuxR family) protein
           [Alteromonadales bacterium TW-7]
          Length = 229

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 44/91 (48%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R ++     +I L+A+   ++     +       LT RE   +  I++G +++ IA  L 
Sbjct: 129 RKVISKAFSDILLVASSFNSLKDDITLKQDDYAHLTKREKSVIHLIAQGASNNTIADKLN 188

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           IS +TV  ++ S  +KT ++ R     +A R
Sbjct: 189 ISDHTVKTHLYSAFKKTNSRNRIELANWAQR 219


>gi|15598616|ref|NP_252110.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9949559|gb|AAG06808.1|AE004763_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 827

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  I++G ++ EI   L IS +TV  +   I  K     R+ A+A A    
Sbjct: 765 PLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALG 824

Query: 245 IV 246
           ++
Sbjct: 825 LL 826


>gi|330940323|gb|EGH43432.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 70

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R 
Sbjct: 5   VQLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 64

Query: 244 NIV 246
            ++
Sbjct: 65  GVI 67


>gi|302038541|ref|YP_003798863.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300606605|emb|CBK42938.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 15/217 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEY----VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            R++  D           + E     VGA        D     + D I+  D    L+  
Sbjct: 5   PRVLLADDHTLVLEGFRRIVEQRCEVVGAVEDGRALLDAATRLRPDLILL-DISMPLLNG 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  + + K      +   +     H  P  ++           L    AR       L  
Sbjct: 64  VDAARQLKKLLPDVKLIFVT---MHADPAYVSEAFKAGASAYLLKRSAAR------ELEQ 114

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAV 208
               +L+ + +   LL         +  V  + +  ELT R+ E L  I+EG+T  EIA 
Sbjct: 115 AIDSVLKGQYFVTSLLTKDLVTTLSAGQVGLFAQRQELTPRQREVLQLIAEGRTIKEIAS 174

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +L IS  TV  + A I+     +T +    YA+ + +
Sbjct: 175 LLNISPKTVEFHKAQIIFHLNLRTTAELTKYALAHGL 211


>gi|297157182|gb|ADI06894.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 230

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 12/230 (5%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            +Q        PTR  ++     L       + + +  +       + V  +    ++  
Sbjct: 2   KDQYDGVNEAGPTRIRVVVAEDQLAVRAGLVLILRSAPD-------IEVVAEAADGEQAV 54

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRY 130
            +     P  ++  + +   D      +   E    V      ++              +
Sbjct: 55  RLARELRPDLVLMDIQMPRLDGVSATREIAAEQLADVLILTTFDLDEYVFGALRAGAAGF 114

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D A +   +  +     +I       +    A       +          LT RE
Sbjct: 115 LLKDSDAAGLLAAVRTVASGEGMIAPAVTRRLIAEFARPQYAPAAPTADPAALASLTPRE 174

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            E L  +  G ++ EIA  L ++  TV  +++ ++ K   ++R  A   A
Sbjct: 175 REVLGALGRGLSNAEIADHLAMAEATVKTHVSRVLGKLGLRSRVQAAVLA 224


>gi|294632670|ref|ZP_06711229.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. e14]
 gi|292830451|gb|EFF88801.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. e14]
          Length = 201

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +          R   L+ +    R+   +           RL  + L      +   + 
Sbjct: 75  RDGALRALRAGARAMVLSAEATPERLAATVHSAHRG---EGRLSHLALARLLDGSPAPAG 131

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LTGR+++ L  +++G  ++ IA  L  SR+TV N I  +M +   + R+ A
Sbjct: 132 PGRPPGAPGLTGRQLDVLRLMADGHGNEAIAATLHCSRHTVKNVIYELMGQLQVRNRAHA 191

Query: 237 IAYAVRNNIV 246
           +A+A+R  ++
Sbjct: 192 VAHALRTGLI 201


>gi|221369141|ref|YP_002520237.1| Two-component response regulator [Rhodobacter sphaeroides KD131]
 gi|221162193|gb|ACM03164.1| Two-component response regulator [Rhodobacter sphaeroides KD131]
          Length = 220

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWIS 198
            IG   L      ++  R +    LAA      KS           +LT RE + L  ++
Sbjct: 112 GIGSRELISVLEDLVAGRTYVAPTLAAKVLTRLKSPRAQGAAAPIDQLTAREEDILRLVA 171

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EG ++ E+A+ L +   TV +Y+ +I++K   + R+ A   A R+
Sbjct: 172 EGCSNKEVALALDLQEKTVKHYMTAILQKLQVRNRTEAALMAQRH 216


>gi|254438192|ref|ZP_05051686.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307]
 gi|198253638|gb|EDY77952.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307]
          Length = 256

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 78/232 (33%), Gaps = 21/232 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           LL  +       +    +  L ++ G +H ++  W     ++        +P   V+   
Sbjct: 8   LLVTLDQATELSALQDTIVRLRDHYGVAH-MVYHWVSADGEQYG---CGTYPLSWVQHYV 63

Query: 92  LSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTFDVARIR 141
             +  +   V+    + F PV                     AG+ N+  S+       +
Sbjct: 64  QKDYLRIDPVIIGCFKQFHPVDWKALDWSSKAAVAFRAEAMQAGVGNQGYSIPIRGPSGQ 123

Query: 142 IGLMLLF-----PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECL 194
             L  L                  ++ L A          +     D    L+GRE++ L
Sbjct: 124 FALFSLSNNTDDTDWAAFTESNRRDLILCAHSFNQKALEVETKRMPDPVKPLSGREIDVL 183

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+++ G +  ++A  L IS +T+  Y+ S   K        A+A AV   ++
Sbjct: 184 TYLAMGYSRSQVAQTLTISEHTLRAYVESARFKLGASNTMHAVARAVSEGLI 235


>gi|182679885|ref|YP_001834031.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635768|gb|ACB96542.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 255

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 83/240 (34%), Gaps = 32/240 (13%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD----- 85
           +   R+   D   + +     +   +G   F L+R     ++   SI+ + +P D     
Sbjct: 14  EYQRRIDSADSLCALSHLTEEMCLSLGFPWFTLIRGKQLAKRDDRSILLTSYPQDWVDHV 73

Query: 86  -----------------LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                            LV  ++ +E  +Y  +  R  E          E+         
Sbjct: 74  LKEKRHLDDPVHFAASRLVNGLSWNEIGQYVTLNSRQIETL--------ESARRHGLNTG 125

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANMFKSYDVHWGKDFEL 186
               L  D     +  M       I   +RL    +G +   +A+   + D        L
Sbjct: 126 FTIPLRLDGFENAMFSMAKRKANVITSEERLLACLVGSVTFARAHALVTADAGIFTPVHL 185

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + R+V+C+  +++G +  EIA  LGIS  TV  YI    R    K R      AVR+  +
Sbjct: 186 SPRQVDCVALLAKGYSDFEIARQLGISPETVREYITKARRSYGVKRRFQLAILAVRDGYL 245


>gi|110681357|ref|YP_684364.1| nitrate/nitrite response regulator protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109457473|gb|ABG33678.1| nitrate/nitrite response regulator protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 210

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 35/54 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ +E E L  ++EG T+ +++  L IS NTV  ++++I  K + + R+ AIA+
Sbjct: 147 LSRKEREILDALAEGLTNKQLSARLEISTNTVKFHLSNIFDKLSVRNRTQAIAH 200


>gi|72161807|ref|YP_289464.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71915539|gb|AAZ55441.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 214

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          D     L   V  +  G  ++ P              L+  + A 
Sbjct: 88  VFGALRAGAAGFLLKDVEAADLLKAVHTVARGEGMIAPA---------VTRRLINEFAAT 138

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             +  +       E LT RE E L  I EG ++ +IA  L I+  T   +++ I+ K   
Sbjct: 139 RPREQEKADPAILERLTPREREVLACIGEGLSNQQIARRLYITETTAKTHVSRILTKLDL 198

Query: 231 KTRSGAIAYAVRNNI 245
           ++R  A   A    +
Sbjct: 199 RSRVQAAIVAREVGL 213


>gi|324999341|ref|ZP_08120453.1| transcriptional regulator, LuxR family protein [Pseudonocardia sp.
           P1]
          Length = 595

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D        L+ RE+E LT +  G ++ EIA  L I++ T   ++  +M+K  T TR+
Sbjct: 90  SGDPVERLPAGLSARELEILTMLVVGPSNAEIAGELRITQRTAATHVTHLMQKLGTPTRT 149

Query: 235 GAIAYAVRNNIV 246
            A  YA+   ++
Sbjct: 150 AAATYALDTGLL 161


>gi|320536217|ref|ZP_08036263.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
 gi|320146919|gb|EFW38489.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
          Length = 201

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 171 NMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           N   +      K FE L  RE + L  I++G  + EIA  L +S  T+ NY++SI+ K A
Sbjct: 128 NKIPTKKPQKEKFFEDLNEREADILELIADGLNNKEIAQRLYLSEGTIRNYVSSILEKLA 187

Query: 230 TKTRSGAIAY 239
            + R+  + Y
Sbjct: 188 LRDRTQLVVY 197


>gi|298244409|ref|ZP_06968215.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551890|gb|EFH85755.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++  T+ EI   L +S  TV N++++I  K    TR+ AI  A    
Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLVLSPKTVRNHVSNIFSKLQVATRAQAIIRAREAG 217


>gi|297623791|ref|YP_003705225.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164971|gb|ADI14682.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 503

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +   AG +     L +D+   + G   LF   + ++ D  W    +    A   ++    
Sbjct: 376 LGGDAGDERGLLKLFYDITERKRGEEALFRALQEVMSDTAWFSTQVMERLAQ-IRAGRPK 434

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE + L  +++GK+++ IA  LG++R TV NYI+ +  K    +R+ A+ +
Sbjct: 435 AAPSVALTERERQVLAQLAQGKSNEAIAAELGLARQTVRNYISVLYDKIGVHSRAEAVVW 494

Query: 240 AVRNN 244
           A    
Sbjct: 495 ARERG 499


>gi|170782105|ref|YP_001710438.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156674|emb|CAQ01832.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 228

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 4/149 (2%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
              +  + P  L    F              + +     D   +   +  +     +I  
Sbjct: 77  ADASGERPPRVLVLTTFDLDESAARAIRAGASGFVLKDADPEFLLAAIRTVHAGNSVIAA 136

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               ++        +      V       LT RE E     + G ++ EIA    +S  T
Sbjct: 137 SATRQL----LEHFDPGSRPRVAPPAFASLTSREREIFVLAARGLSNAEIAQAEFLSEAT 192

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  +++ I+ K + + R   + +A  + +
Sbjct: 193 VKTHVSRILAKLSLRDRVQLVVFAFEHRL 221


>gi|304390804|ref|ZP_07372756.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656419|ref|ZP_07909308.1| two component system response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|304325687|gb|EFL92933.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492978|gb|EFU82580.1| two component system response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 233

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 3/140 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y + T     +   ++ +          RL    +L
Sbjct: 96  RFLALSVSDAAEDVVAVIRAGARGYVTKTIATPDLVDAIVRVAGGDAAFSP-RLAGF-VL 153

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ A            D  LT RE E +  I+ G    EIA  L IS  TV  +++S++
Sbjct: 154 DAFGAARTDMVGNDSELD-SLTEREFEVMRLIARGFAYKEIASELYISVKTVETHVSSVL 212

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RK     R     +A    I
Sbjct: 213 RKLQLSNRYELSKWAQDRRI 232


>gi|288803368|ref|ZP_06408801.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
 gi|288334188|gb|EFC72630.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
          Length = 198

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV
Sbjct: 129 KNKILSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAV 188

Query: 242 RNNIV 246
            +  +
Sbjct: 189 MHGYI 193


>gi|229082566|ref|ZP_04215029.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228700998|gb|EEL53521.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 189

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|183982880|ref|YP_001851171.1| putative regulatory protein [Mycobacterium marinum M]
 gi|183176206|gb|ACC41316.1| conserved hypothetical regulatory protein [Mycobacterium marinum M]
          Length = 395

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT REVE L  ++ G+T+ +IA  L IS  TV +++  ++RK     R+ A +  VR
Sbjct: 331 LTRREVEVLRLMAAGRTNQQIADELVISAGTVKSHVKRVLRKLHATNRAEAASAYVR 387


>gi|16272666|ref|NP_438884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           Rd KW20]
 gi|145630463|ref|ZP_01786243.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|145632075|ref|ZP_01787810.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           3655]
 gi|145634865|ref|ZP_01790573.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittAA]
 gi|145637737|ref|ZP_01793389.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittHH]
 gi|148827914|ref|YP_001292667.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittGG]
 gi|229844595|ref|ZP_04464734.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           6P18H1]
 gi|260579818|ref|ZP_05847648.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           RdAW]
 gi|260583177|ref|ZP_05850957.1| nitrate/nitrite response regulator protein narP [Haemophilus
           influenzae NT127]
 gi|319775331|ref|YP_004137819.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3047]
 gi|319897771|ref|YP_004135968.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3031]
 gi|329122673|ref|ZP_08251251.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           aegyptius ATCC 11116]
 gi|1171656|sp|P44845|NARP_HAEIN RecName: Full=Nitrate/nitrite response regulator protein homolog
 gi|1573730|gb|AAC22384.1| nitrate/nitrite response regulator protein (narP) [Haemophilus
           influenzae Rd KW20]
 gi|144983853|gb|EDJ91295.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|144986982|gb|EDJ93512.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           3655]
 gi|145268031|gb|EDK08027.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittAA]
 gi|145269086|gb|EDK09037.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittHH]
 gi|148719156|gb|ABR00284.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittGG]
 gi|229812309|gb|EEP47999.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           6P18H1]
 gi|260093102|gb|EEW77035.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           RdAW]
 gi|260093795|gb|EEW77703.1| nitrate/nitrite response regulator protein narP [Haemophilus
           influenzae NT127]
 gi|301169444|emb|CBW29044.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Haemophilus influenzae 10810]
 gi|317433277|emb|CBY81652.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3031]
 gi|317449922|emb|CBY86134.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3047]
 gi|327472547|gb|EGF17977.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           aegyptius ATCC 11116]
          Length = 208

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           LL+       + +  +V  D  F++V  ++   +     +   P   +       L    
Sbjct: 8   LLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGLD 67

Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-----------RLWEIGLL 165
           T       G+D R   LT   A+  I  ++       +L+D           R+ +  ++
Sbjct: 68  TLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQGEVI 127

Query: 166 AAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            +           H     + LT RE+  L  I+ G ++ +IA  L IS  TV  +I ++
Sbjct: 128 LSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNL 187

Query: 225 MRKTATKTRSGAIA 238
           +RK    +R  A  
Sbjct: 188 LRKLNVHSRVAATV 201


>gi|282898699|ref|ZP_06306687.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196567|gb|EFA71476.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 216

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFEL 186
            +  D   +        P       + L ++  L  + +    +    W       +  L
Sbjct: 102 PIVCDGRLVGTLNFARDPGSPPFNNNDLADLSALCIHLSAKIATLQAKWNMVKPITECPL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE+E    +++G T+ EIA  L IS+NTV   +  + +K     R+  +A 
Sbjct: 162 TARELEIAKLVAQGLTNGEIASQLWISQNTVKQSLKRMFKKLGVSARAEMVAK 214


>gi|265754224|ref|ZP_06089413.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
 gi|263234933|gb|EEZ20488.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
          Length = 214

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 13/202 (6%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL--QRP 105
            M A+   VG   F +++ +   +++L  ++       +V    L +    Y ++  +R 
Sbjct: 16  GMKAVAGRVG--GFTVIK-EAGSQKELTRLLIDHPNAVVVLDYTLFDTSAEYLLILQERF 72

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            E     F    ++++        +   +F V      ++ +       LR     +  +
Sbjct: 73  KEAH---FILFSDSLSEDFIRRMVFGGTSFSVVMKDAPMIEIEEG----LRKAEQRLQYI 125

Query: 166 AAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
               A  +    +    +   LT  E E L  ++ GKT+ EIA    +S  TV  +  +I
Sbjct: 126 CTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVMTHRKNI 185

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK        A  YA+R  IV
Sbjct: 186 FRKLEVNNVYEATKYALRAGIV 207


>gi|228924099|ref|ZP_04087375.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835589|gb|EEM80954.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 189

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|229065002|ref|ZP_04200300.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716303|gb|EEL68015.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 189

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|229185568|ref|ZP_04312748.1| Response regulator [Bacillus cereus BGSC 6E1]
 gi|228597963|gb|EEK55603.1| Response regulator [Bacillus cereus BGSC 6E1]
          Length = 566

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 97/253 (38%), Gaps = 11/253 (4%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E  Q  + +    EQ T  + ++P ++  +  +I L       +   +L + +      
Sbjct: 316 LEQVQGTLSVQSNVEQGTLIICNIPLQTKPVHDIIRLLVVDDQALITNSLEQILENQTDF 375

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119
           +V    +   +   +     P  ++  + + E +    +L+   R   +   +  T  ++
Sbjct: 376 IVVGKAYDGSEALILCEQLQPDIVLMDIQMPEMNGIEALLEMKRRWPNMKIVLMTTFEDS 435

Query: 120 ITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQANMF 173
           +     ++     Y   +     ++  L L++  G  I +    R++E   L   Q    
Sbjct: 436 LQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIFEEMKLQREQLAKI 495

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS    +   + LT RE+E L  +S G     IA  L +S  T+ NY +++  K     R
Sbjct: 496 KSTKQTF--PYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKLGVSNR 553

Query: 234 SGAIAYAVRNNIV 246
             AI  A   NI+
Sbjct: 554 EEAIKMARTENIL 566


>gi|255525021|ref|ZP_05391967.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296187376|ref|ZP_06855771.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511277|gb|EET87571.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296047898|gb|EFG87337.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 220

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 10/161 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           VR   +   +    V ++  ++   +  T  E+     G+ N    Y         I   
Sbjct: 55  VRMPVMDGVEATKLVKEQYKDVKVIILTTFTEDEYIFKGIKNGADGYILKDAGSEDIIKA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWIS 198
           +   +    ++  +      ++ AY++   +  ++   K  +     LT RE++    ++
Sbjct: 115 IKTAYNGNILLNPE--VAAKIVKAYKSISTEKQNLDKYKTQKYKLDLLTKREMDVAKLVA 172

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EGK++ +I  +L +S  TV NY+  I  K    +R+    +
Sbjct: 173 EGKSNKDICKVLFLSEGTVKNYVTKIFEKLQLNSRTELAVF 213


>gi|237707990|ref|ZP_04538471.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|237725262|ref|ZP_04555743.1| transcriptional regulator [Bacteroides sp. D4]
 gi|229436528|gb|EEO46605.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|229457976|gb|EEO63697.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
          Length = 216

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 13/202 (6%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL--QRP 105
            M A+   VG   F +++ +   +++L  ++       +V    L +    Y ++  +R 
Sbjct: 18  GMKAVAGRVG--GFTVIK-EAGSQKELTRLLIDHPNAVVVLDYTLFDTSAEYLLILQERF 74

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            E     F    ++++        +   +F V      ++ +       LR     +  +
Sbjct: 75  KEAH---FILFSDSLSEDFIRRMVFGGTSFSVVMKDAPMIEIEEG----LRKAEQRLQYI 127

Query: 166 AAYQA-NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
               A  +    +    +   LT  E E L  ++ GKT+ EIA    +S  TV  +  +I
Sbjct: 128 CTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVMTHRKNI 187

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK        A  YA+R  IV
Sbjct: 188 FRKLEVNNVYEATKYALRAGIV 209


>gi|254485770|ref|ZP_05098975.1| two component transcriptional regulator, LuxR family [Roseobacter
           sp. GAI101]
 gi|214042639|gb|EEB83277.1| two component transcriptional regulator, LuxR family [Roseobacter
           sp. GAI101]
          Length = 204

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE++ L  ++EGK + EIA  L IS  TV  ++ ++ RK     R+ A   A    
Sbjct: 143 KLSSRELQVLKGLTEGKANKEIARDLDISEPTVKLHMKTLYRKVGAANRTQAALIAREAG 202

Query: 245 I 245
           +
Sbjct: 203 L 203


>gi|28901050|ref|NP_800705.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28809563|dbj|BAC62538.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 208

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANMFKS 175
                G + R   LT   +   I  ++       +L     D L E+ L  A+Q +   S
Sbjct: 68  ALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVEL-LKQAHQGDKAYS 126

Query: 176 YDV---------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +V         H      LT RE + L  ++ G  + +IA  L IS +TV  ++ S+++
Sbjct: 127 QEVAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLK 186

Query: 227 KTATKTRSGAIA 238
           K    +R+ A  
Sbjct: 187 KLQVPSRTAATV 198


>gi|332716106|ref|YP_004443572.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062791|gb|ADY66481.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 256

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 8/192 (4%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
             + +  GA+  L++ + +  E+    +  V    P D    + +   DK+   L++   
Sbjct: 56  ATIDDDYGANVRLVLPYRMSGERLHSVLSAVHEKHP-DAPIALVVETIDKFEEPLKQLVG 114

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   +   LP N+     M      +          L  L P  + +    +    ++A 
Sbjct: 115 MRI-IDGVLPLNLRLDVFMAAVDLLMKGGEHFPAALLGKLTPYSQAVNGKSVQSNAVIA- 172

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              N   +  V   +   LT REV+ L  + +G  +  IA  L +S NTV  ++ +I +K
Sbjct: 173 ---NRADALAVSKSEMAALTTREVQILDLLCKGTQNKIIADRLHLSENTVKVHVRNIYKK 229

Query: 228 TATKTRSGAIAY 239
              + R+ A + 
Sbjct: 230 MNVRNRTEAASR 241


>gi|300787038|ref|YP_003767329.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796552|gb|ADJ46927.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 215

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG T+DEI   LG+SRNT  N++  ++ K   +++  A+A A R  +
Sbjct: 154 LTARERETLDLLAEGATTDEIGARLGVSRNTTRNHVQRVLEKLGARSKLEAVAVARREGL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|288802576|ref|ZP_06408015.1| transcriptional regulator [Prevotella melaninogenica D18]
 gi|288335104|gb|EFC73540.1| transcriptional regulator [Prevotella melaninogenica D18]
          Length = 214

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L  +  NM  +      K+   LT  E E L  I+ G T+ EIA     S +TVN +  
Sbjct: 124 FLCQHATNMILAPTALVDKEIVALTKTETEILKEIALGATTREIADKRFSSFHTVNTHRK 183

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I RK        AI YA+R+ +V
Sbjct: 184 NIFRKLGVNNVHEAIRYAMRSGLV 207


>gi|260900449|ref|ZP_05908844.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ4037]
 gi|308106954|gb|EFO44494.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ4037]
 gi|328470949|gb|EGF41860.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           10329]
          Length = 210

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANMFKS 175
                G + R   LT   +   I  ++       +L     D L E+ L  A+Q +   S
Sbjct: 70  ALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVEL-LKQAHQGDKAYS 128

Query: 176 YDV---------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +V         H      LT RE + L  ++ G  + +IA  L IS +TV  ++ S+++
Sbjct: 129 QEVAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLK 188

Query: 227 KTATKTRSGAIA 238
           K    +R+ A  
Sbjct: 189 KLQVPSRTAATV 200


>gi|254297002|ref|ZP_04964455.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 406e]
 gi|157806917|gb|EDO84087.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 406e]
          Length = 225

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 46/138 (33%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   V     E  T        +     D   +  G+        +I      +      
Sbjct: 80  VILTVSEDAEELTTALRDGACGFLVKNIDAETLVAGIRKAAAGEPVIAESMTAKWIASLR 139

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A              +LT RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K
Sbjct: 140 APAAALAPAAHASVDPDQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKK 199

Query: 228 TATKTRSGAIAYAVRNNI 245
               +R     YAV   +
Sbjct: 200 LNLSSRVQIAVYAVERGL 217


>gi|153837120|ref|ZP_01989787.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ3810]
 gi|149749537|gb|EDM60283.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ3810]
          Length = 212

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANMFKS 175
                G + R   LT   +   I  ++       +L     D L E+ L  A+Q +   S
Sbjct: 72  ALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVEL-LKQAHQGDKAYS 130

Query: 176 YDV---------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +V         H      LT RE + L  ++ G  + +IA  L IS +TV  ++ S+++
Sbjct: 131 QEVAKYLSERSDHEDVFDSLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLK 190

Query: 227 KTATKTRSGAIA 238
           K    +R+ A  
Sbjct: 191 KLQVPSRTAATV 202


>gi|83858980|ref|ZP_00952501.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83852427|gb|EAP90280.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 200

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 6/132 (4%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE------IGLLAAYQANM 172
                +G D R   +T       +   L       +L+D   E        +    +A  
Sbjct: 67  EALRQSGSDTRVLIVTTFARPGYLQRALQAGVLGYVLKDAPSEELADAVRRVAQGQRAIA 126

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +  +  W     LT RE + L  + EGK++ EIA +L +S  TV NY+A   +K     
Sbjct: 127 SELAETAWSAPVVLTARERDILRLVEEGKSNKEIARLLNLSPGTVRNYLAEATQKLGAAN 186

Query: 233 RSGAIAYAVRNN 244
           R  A   A  N 
Sbjct: 187 RIEAFQIARENG 198


>gi|293607167|ref|ZP_06689509.1| LuxR family sensory box transcriptional regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292814501|gb|EFF73640.1| LuxR family sensory box transcriptional regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 508

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDVHW 180
           G   R   +  D+   +     L      +++D  W     I  LA  +     S DV  
Sbjct: 371 GGQRRLLIVMQDITERKRSETELLAAIEAVMQDTSWFSRGIIEKLAQLRQPAPASRDV-- 428

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +LT RE E L  + +G   D IA  L +SRNTV N++A+I  K     RS AI +A
Sbjct: 429 AELAQLTTREREVLGLLCQGHDDDGIAKALKLSRNTVRNHVATIYSKIGVHRRSAAIVWA 488

Query: 241 VRNNI 245
               I
Sbjct: 489 RDRGI 493


>gi|256617156|ref|ZP_05474002.1| salavaricin two-component system response regulator [Enterococcus
           faecalis ATCC 4200]
 gi|257087415|ref|ZP_05581776.1| salavaricin two-component system response regulator [Enterococcus
           faecalis D6]
 gi|312899812|ref|ZP_07759131.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0470]
 gi|256596683|gb|EEU15859.1| salavaricin two-component system response regulator [Enterococcus
           faecalis ATCC 4200]
 gi|256995445|gb|EEU82747.1| salavaricin two-component system response regulator [Enterococcus
           faecalis D6]
 gi|295113419|emb|CBL32056.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Enterococcus sp. 7L76]
 gi|311293062|gb|EFQ71618.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0470]
 gi|315025432|gb|EFT37364.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2137]
 gi|315166424|gb|EFU10441.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1341]
          Length = 197

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   +EG    EIA  L ISR TVNN++ SI  K    +   AI  A+   I
Sbjct: 132 LSKREKEILKCAAEGFKQQEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQAIELGI 191

Query: 246 V 246
           +
Sbjct: 192 I 192


>gi|134096765|ref|YP_001102426.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005191|ref|ZP_06563164.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909388|emb|CAL99500.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 211

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 10/163 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA------RI 140
           V  + +   D     L R      P     P  +   A  D +      +        + 
Sbjct: 49  VAVVDMRLPDGDGLELCRRLRALDP----APYCLVLTAFDDEQALVGAINAGASGYLLKQ 104

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             G  L+     +     L +    A     + +S      +   LT RE + L  I EG
Sbjct: 105 VRGQDLVNAVREVAAGRSLLDPVTTARVLDRLRQSTSPVPDELDALTERERKVLELIGEG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            T+ +IA  L ++  TV NY+ +++ K   + R+ A A+  R 
Sbjct: 165 LTNRQIAERLFLAEKTVKNYVTAVLAKLGMERRTQAAAWVARR 207


>gi|260904389|ref|ZP_05912711.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 220

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 7/174 (4%)

Query: 78  VSSDWPFDLVRCMALSEKDKYY------NVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           V    P  ++  + +   D          + + P  L    F T    ++      + Y 
Sbjct: 43  VERVHPDVVLMDLRMPGMDGREATAELMKLPEPPKVLALTTFDTDAHVLSVLDAGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A I   +     +GR IL  R   + L    +       D       +LT RE 
Sbjct: 103 LKDTPPAEIIDAVRETA-EGRTILSSRHARVLLDKYSENGNNARKDQAIEALSQLTERER 161

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + ++++G T+ EI   L  S  TV  ++ASI  +     R           +
Sbjct: 162 EVVQYVAQGLTNAEIGKRLHCSPATVKAHLASIFTQLQITNRVRLAVLGHDAGL 215


>gi|302553857|ref|ZP_07306199.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471475|gb|EFL34568.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 325

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            F+L+ RE E +  I+ G  + +IA    IS  TV N+I  I  K  + +R  A+A 
Sbjct: 251 RFQLSTREAEIMDLIASGMNNQQIAATCFISEKTVKNHINRIFAKLHSTSRGEAVAK 307


>gi|226356513|ref|YP_002786253.1| DNA-binding response regulator [Deinococcus deserti VCD115]
 gi|226318503|gb|ACO46499.1| putative DNA-binding response regulator [Deinococcus deserti
           VCD115]
          Length = 216

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A      F+S ++       LT +E   L  I+ G ++ +IA   G+S  TV  +++ ++
Sbjct: 135 ARRLVRDFRSPEMRES----LTPKETIVLQLIARGCSNRDIAQDQGVSEATVKTHVSRLL 190

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K   ++R+ A  YA+R+ I
Sbjct: 191 SKLGLESRTQAALYALRHGI 210


>gi|167765400|ref|ZP_02437513.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC
           43183]
 gi|167697028|gb|EDS13607.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC
           43183]
          Length = 256

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  I +G  S EIA  LG+S +TVN +  +++RK   +    AI    +  
Sbjct: 194 ELTNREIEILQLIKQGLLSKEIAYTLGVSIHTVNIHRQNLLRKLGVQNSIEAINIGSKTG 253

Query: 245 IV 246
           ++
Sbjct: 254 LI 255


>gi|322383304|ref|ZP_08057104.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152424|gb|EFX45223.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 872

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQA 170
           + H L E +               ++  IR  L L        L  R       + ++  
Sbjct: 733 ILHVLREAVH-YGYEHEHLAPFYLEIETIRPYLSLFLVDPNQELNSREKRFAQRIQSFVV 791

Query: 171 NMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            + K   +      +    L+ RE+E L  ++ G+ + EI   L IS  TV +++ +I  
Sbjct: 792 EVKKGRSLPLASAEQETAILSKRELEVLQVLAAGRRNKEIGKELCISLATVKSHVINIYS 851

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K     R  A+       ++
Sbjct: 852 KLQVSNRVEAVERGRELRLL 871


>gi|291455021|ref|ZP_06594411.1| two component system response regulator [Streptomyces albus J1074]
 gi|291357970|gb|EFE84872.1| two component system response regulator [Streptomyces albus J1074]
          Length = 297

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 9/134 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V                   ++   V  +  G + +  +         +   +L A  + 
Sbjct: 90  VLEAARAGARGLLLKSGGQEAILSGVRDVAAGGIAMSTE---------FVSQILKALHSA 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + +  +     LT RE++    +S+G T+ +I+  L +S  TV ++   I  K   +
Sbjct: 141 YLPAAERPFRDISLLTPREMQVFRLVSQGLTNQQISNRLVLSEATVKSHFNRICHKLDLR 200

Query: 232 TRSGAIAYAVRNNI 245
            R  A+  A    I
Sbjct: 201 NRVDAVILAYETGI 214


>gi|259419008|ref|ZP_05742925.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
 gi|259345230|gb|EEW57084.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
          Length = 214

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAY 168
           +    PE       M +    ++  ++   +G +L   +   I   +   +     L   
Sbjct: 72  ILERRPETRVLILSMHDSPEYISTALSHGAVGYVLKDVQPEEIKTAIDAVMRGTQYLCTG 131

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    S   H  ++  LTGRE   L  +++GK++ E+A+ L IS  TV  +  +I RK 
Sbjct: 132 AAGSL-SPQSHTSRE-ALTGREQTILLELAQGKSNKEVALTLDISVRTVETHRKNIKRKL 189

Query: 229 ATKTRSGAIAYAVRNNIV 246
              + +G   YA+ + ++
Sbjct: 190 GISSTAGLTRYALEHGVL 207


>gi|302525732|ref|ZP_07278074.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434627|gb|EFL06443.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 217

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 101 VLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
           + +   E+       L E +          +   + +  R+   + L+     ++     
Sbjct: 71  IAEGLAEVLVLTTFDLDEYVHAALRAGAAGFLLKSVEAPRLIEAVRLVAAGEGVLAPQVT 130

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               L+AA+ A+   +         +LT RE E L  +  G ++ EI   L I   TV  
Sbjct: 131 KR--LIAAF-ASTPAAPSPAPTGLADLTEREREVLGCLGAGLSNAEIGARLYIGEATVKT 187

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245
           +++ ++ K   ++R  A   A  ++I
Sbjct: 188 HVSRVLAKLGLRSRVQAAILAQDHDI 213


>gi|229164302|ref|ZP_04292233.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619145|gb|EEK76040.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 189

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 19/163 (11%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   + ++E  K          +    F              + Y         +   
Sbjct: 46  MPIQSGLDVAETLKKEKSA--CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAA 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R I +D ++ +                 W +   L+ RE E L    EGKT+
Sbjct: 104 IRNVMKGKREISQDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTA 146

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 147 NEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|297563772|ref|YP_003682746.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848220|gb|ADH70240.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 234

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D     L   V  +  G  LL P     + +RL +  +     + 
Sbjct: 107 VFTALRLGASGFLLKDAGPRQLRDAVRTVAAGDALLSPGVTRRVIERLADTAVAPGSASR 166

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +    DV       LTGRE + L  +  G ++ EI   L +S  T   ++  ++ K   +
Sbjct: 167 L----DV-------LTGRERDVLALVGRGMSNQEIGAALHLSPATARTHVGRLLAKLGVR 215

Query: 232 TRSGAIAYAVRNNIV 246
            R G +  A    +V
Sbjct: 216 DRVGLVVVAYETGLV 230


>gi|291299270|ref|YP_003510548.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568490|gb|ADD41455.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 993

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D       L L       +    L +       +A +          +  LT RE+  L 
Sbjct: 881 DREEAATQLALAAKTADKLDAAPLRKAVAALTRRARLRGEASAAAPANGLLTDRELAVLK 940

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G T+ ++   L IS  TV+ +++ +M K    +R+ A++ A    ++
Sbjct: 941 LVAVGHTNKQVGAELFISDKTVSVHLSRVMAKLGVTSRTEAVSAAYTAGLL 991


>gi|289522810|ref|ZP_06439664.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503834|gb|EFD24998.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 222

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 15/178 (8%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM--------DN 128
           +V    P  +V  + + + +       +      P    +  ++    GM          
Sbjct: 46  LVPRYNPDIVVMDITMPDMNGIDA--TKMLTQRHPNVKIIALSMHLDRGMISQILEAGAR 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y      +     G+  +      +         +L  Y   + K  DV    + +L+ 
Sbjct: 104 GYILKDCSIDEFVQGIKAVSQDLVYLTPKA--AKIVLEDYL--LLKRGDV-LAAENKLSP 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  + +G+ +  IA  L IS++TV+ +  +IM K      +    YA+R  +V
Sbjct: 159 REMEVLRLLVKGEHTKSIASKLSISKSTVDTHRKNIMEKLNCANIADLTRYAIREGLV 216


>gi|268610385|ref|ZP_06144112.1| response regulator [Ruminococcus flavefaciens FD-1]
          Length = 208

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGRE 190
            ++    G +L       I+       G +  +  N+F+S           K+F LT RE
Sbjct: 93  AISSGADGYILKEMDNDKIINSIKAVAGGINVFCDNVFRSIKKDVVVQQDAKNFGLTERE 152

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E +  I +G  + EIA  L ++  TV N I+ ++ K   K R+    +A++NNIV
Sbjct: 153 TEFIRLICDGCDNKEIAAKLFLAEGTVRNGISRLLEKLELKDRTQLAVFAIKNNIV 208


>gi|302345392|ref|YP_003813745.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
 gi|302150188|gb|ADK96450.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
          Length = 204

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV
Sbjct: 135 KNKILSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAV 194

Query: 242 RNNIV 246
            +  +
Sbjct: 195 MHGYI 199


>gi|238756079|ref|ZP_04617401.1| Two component transcriptional regulator, LuxR family [Yersinia
           ruckeri ATCC 29473]
 gi|238705685|gb|EEP98080.1| Two component transcriptional regulator, LuxR family [Yersinia
           ruckeri ATCC 29473]
          Length = 209

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 12/132 (9%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMF------- 173
           G+  +   LT   AR  +  M+       +L+D   E+ L    LAA   ++F       
Sbjct: 76  GIAAKIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEVLLEHLCLAAQGESVFSREVTDY 135

Query: 174 -KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S         ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++
Sbjct: 136 LASRHEQINPFAELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRS 195

Query: 233 RSGAIAYAVRNN 244
           R  A    + N 
Sbjct: 196 RVAATILYLENK 207


>gi|119960584|ref|YP_948678.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119947443|gb|ABM06354.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 224

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 9/152 (5%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
               +L   + L   V     + ++        Y + T     I   ++ +     +   
Sbjct: 80  GSAALLATTSFLALSVSDAAEDVVSVIRAGARGYVTKTISGKEISDAVIRVADGDAVFSP 139

Query: 157 DRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                   LA +  + F     D+   +  +L+ RE+E +  I+ G +  E+A  L IS 
Sbjct: 140 -------RLAGFVLDAFGTAPADIADDELDKLSARELEVMRLIARGYSYKEVAKELFISI 192

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  ++++++RK    +R     +A    ++
Sbjct: 193 KTVETHVSAVLRKLQLSSRHELTKWAAERRLL 224


>gi|220912551|ref|YP_002487860.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219859429|gb|ACL39771.1| transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 537

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +S G ++ E+A  L +S  TV  ++A+I  K    +R+ A  +A  +++
Sbjct: 477 LTARETEVLALVSRGASNREVAAALVLSEKTVGRHLANIFAKIGVTSRTAAAGWAREHHV 536


>gi|146305270|ref|YP_001185735.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           ymp]
 gi|145573471|gb|ABP83003.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           ymp]
          Length = 474

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  IS G ++ E+A  LGIS +TV  ++ S+ RK    TR+ A   A+   +
Sbjct: 414 LSERETQILQRISSGASNKEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGV 473

Query: 246 V 246
           +
Sbjct: 474 I 474


>gi|71735294|ref|YP_274236.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257486339|ref|ZP_05640380.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289628631|ref|ZP_06461585.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646789|ref|ZP_06478132.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|71555847|gb|AAZ35058.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320324920|gb|EFW80992.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329075|gb|EFW85073.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867479|gb|EGH02188.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330880992|gb|EGH15141.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330988455|gb|EGH86558.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 87

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G +  TV+ + ++I RK    +   A+  A+R 
Sbjct: 22  VQLTVKERQVLEWVAIGKSAWEISRIQGCTEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 81

Query: 244 NIV 246
            ++
Sbjct: 82  GVI 84


>gi|314934456|ref|ZP_07841815.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae
           C87]
 gi|313652386|gb|EFS16149.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae
           C87]
          Length = 220

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          +     L   V  +  G   +         D      L+  +    
Sbjct: 93  FHVLKSGAKGYILKNAPDEQLILAVRTVYKGETYV---------DMKMTTSLVNEFINQS 143

Query: 173 FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            +    +    F+ L+ RE+E L  I++G  + +IA  L +S  TV  +   IM K   K
Sbjct: 144 HQEEVSYSSDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMNKLNLK 203

Query: 232 TRSGAIAYAVRNNIV 246
           ++   + YA++  ++
Sbjct: 204 SKPELVEYALKKKLL 218


>gi|239918216|ref|YP_002957774.1| RNA polymerase sigma factor, sigma-70 family [Micrococcus luteus
           NCTC 2665]
 gi|239839423|gb|ACS31220.1| RNA polymerase sigma factor, sigma-70 family [Micrococcus luteus
           NCTC 2665]
          Length = 232

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 10/154 (6%)

Query: 101 VLQRPTELFC--PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-- 156
           + +RP + F    V     + +         Y + T   A +    + +     +     
Sbjct: 77  LARRPAQRFLALSVSDAAEDVVAVIRAGARGYITKTASGAEVADAAVRVADGDAVFSPRL 136

Query: 157 -----DRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVIL 210
                D        +        S      +D + L+ RE E +  I+ G T  E  V L
Sbjct: 137 AGFVLDAFRGTAPASPPVPAAATSGAAAPDEDLDRLSAREREVMRLIARGYTYREAGVEL 196

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IS  TV  +++S++RK     R     +A R  
Sbjct: 197 FISDRTVETHVSSVLRKLQLSNRHELTRWAARRG 230


>gi|330501190|ref|YP_004378059.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           NK-01]
 gi|328915476|gb|AEB56307.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina
           NK-01]
          Length = 476

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  IS G ++ E+A  LGIS +TV  ++ S+ RK    TR+ A   A+   +
Sbjct: 416 LSERETQILQRISSGASNKEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGV 475

Query: 246 V 246
           +
Sbjct: 476 I 476


>gi|325270893|ref|ZP_08137480.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324986690|gb|EGC18686.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 246

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L       +    +    +  +LT  E E L  I+ G T+ EIA     S +TVN +  +
Sbjct: 157 LCQHAAGLLLTPAETPDRETVKLTKTETEILKEIALGMTTREIAEKRFSSFHTVNTHRKN 216

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I RK    +   A+ YA+R+ +V
Sbjct: 217 IFRKLGVNSVHEAMRYAMRSGLV 239


>gi|152986923|ref|YP_001348902.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150962081|gb|ABR84106.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 924

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 2/115 (1%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           SL  +       L+            + +  GLL  +     +       +   LT RE 
Sbjct: 812 SLFVEEGEGIRQLLQQLESTERQPALQAFIRGLLGIWPGQGVRKPQDALEE--GLTERER 869

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +   ++G +++EI   L ++  TV  ++ +I  K   + R+ AI  A   +++
Sbjct: 870 EVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQAIRRARELSLL 924


>gi|144897377|emb|CAM74241.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 208

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 17/163 (10%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL-------PENITPPAGMDNRYCSLTFDVARIR 141
            + +   D +  +         P  H +       P ++        +        +   
Sbjct: 55  DLNMPGMDGFDGIEAVCR--AAPNMHLVVISASESPSDVRRALDAGAQGYIAKTSSSSSM 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +  +     G   L  RL E+    A  A   ++ +V       LT R+ + L  + +GK
Sbjct: 113 LDAIRQVLSGDTYLSPRL-EVASANADVAGRDQARNV-------LTPRQRDVLAMLRQGK 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++ EIA  L ++  TV  ++ +I+R    + R+ A   A +  
Sbjct: 165 SNKEIARDLNLAEITVKLHVTAILRALGVENRTQAAILAAKIG 207


>gi|115377388|ref|ZP_01464593.1| response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|310824785|ref|YP_003957143.1| response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115365599|gb|EAU64629.1| response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309397857|gb|ADO75316.1| Response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 223

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 37/81 (45%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  + A +  S  V       LT R+ E L +IS G  + +IA  L I+  TV  +I SI
Sbjct: 137 LDLFSARVEVSEAVDATGVRLLTPRQFEVLRYISTGADNLKIAACLNITERTVKAHITSI 196

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
            +K   + R+     A +  +
Sbjct: 197 YQKLKVENRTQMAMLACQLGL 217


>gi|148379355|ref|YP_001253896.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153934107|ref|YP_001383731.1| LuxR family DNA-binding response regulator [Clostridium botulinum A
           str. ATCC 19397]
 gi|153937750|ref|YP_001387280.1| LuxR family DNA-binding response regulator [Clostridium botulinum A
           str. Hall]
 gi|148288839|emb|CAL82923.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152930151|gb|ABS35651.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933664|gb|ABS39163.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. Hall]
 gi|322805695|emb|CBZ03260.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 217

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         I  G+        ++  D    I L   Y+  +    D      + L
Sbjct: 100 ASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKEL---NDDDISLRYNL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NNIV
Sbjct: 157 TEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIV 216


>gi|111027158|ref|YP_709136.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110825697|gb|ABH00978.1| probable transcriptional regulator, LuxR family [Rhodococcus jostii
           RHA1]
          Length = 427

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  ++ GK +  IA  LGIS +T+  ++AS+++K     R  A A  ++  I
Sbjct: 359 LNPRELEVLAHLAVGKRNKAIATELGISESTIKFHVASVLKKLDVANRGEAGAIGIQAGI 418


>gi|311899923|dbj|BAJ32331.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 243

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D        +  + + +          L    F           G  + +     
Sbjct: 53  DVVLMDVRMPGTDGLEATRRIRADPAAAGTRVLVLTTFDLDEYVYAALCGGASGFLLKDI 112

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A +   L ++     ++         L+  +         +   +   LT RE E L 
Sbjct: 113 LPADLLTALRVVAAGDALLAPAVTRR--LIGEFAGRHEPPPRLAR-ELAGLTPREREVLR 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G  +  +A  L +S  TV  ++  ++ K     R+  +  A    +V
Sbjct: 170 LVARGLPNPAVADHLELSVATVKTHVRRLLAKLHAHDRAQLVVIAYETGLV 220


>gi|309791843|ref|ZP_07686330.1| TPR repeat-containing transcriptional regulator LuxR
           [Oscillochloris trichoides DG6]
 gi|308226165|gb|EFO79906.1| TPR repeat-containing transcriptional regulator LuxR
           [Oscillochloris trichoides DG6]
          Length = 907

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            P  R +L D +  I L A       +    H  +   LT RE+E +  ++ G ++ EIA
Sbjct: 812 LPHERPLL-DAIDRI-LAACPAKPQVRMQPTHLIEP--LTPRELEVIGLVAAGLSNQEIA 867

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + +  +TV  +I +I  K    +R+ A+  A    ++
Sbjct: 868 ERMVVGVSTVKKHINNIYGKLDVLSRTQALKKAREFGLI 906


>gi|284046827|ref|YP_003397167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951048|gb|ADB53792.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y S   D A+I   +  +     ++  +   + G+ A  ++   +   +       LT R
Sbjct: 107 YLSKEADRAQIADAIAAVARGETVLSPEA--QAGIAAEVRSRQVEDRPL-------LTPR 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  ++ G+ + EIA ++ +S  TV  ++ S+  K     R+ A+A A+R  ++
Sbjct: 158 ELEVLGHVAAGRGAPEIARLIHLSPATVKGHLQSLYEKLGVSDRAAAVAEAMRRGLL 214


>gi|302346377|ref|YP_003814675.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
 gi|302151055|gb|ADK97316.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
          Length = 214

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L  +  NM  +      K+   LT  E E L  I+ G T+ EIA     S +TVN +  
Sbjct: 124 FLCQHATNMILAPTALADKEIVALTKTETEILKEIALGATTREIAEKRFSSFHTVNTHRK 183

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I RK        AI YA+R+ +V
Sbjct: 184 NIFRKLGVNNVHEAIRYAMRSGLV 207


>gi|302545491|ref|ZP_07297833.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463109|gb|EFL26202.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 237

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 70/230 (30%), Gaps = 1/230 (0%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
            Q ++  +  P R  L      +    +  +      E VG +       +L +  + D 
Sbjct: 4   PQDSTPGATTPIRVLLADDQTLVRSAFAMLVASARDMEVVGEAGTGRQAVELARTARADL 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +V  D     +  +  + +      L     L    + T    +       + +      
Sbjct: 64  VVM-DIRMPDLDGIEATRRIAADEDLAGVKILILTTYDTDEHIVEALRAGASGFLVKDTR 122

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +     ++       +                       L+ RE + L  
Sbjct: 123 PTELLDAIRTVAAGESLLSPGPTARLIARVLRLPATPPPGTPSPAALSALSERERQVLAL 182

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G  + E A  LG+S  T   +++ IM K   + R+  +  A  + ++
Sbjct: 183 VARGLNNTEAAQALGLSPLTTKTHVSRIMGKLGARDRAQLVITAYESGLI 232


>gi|229176028|ref|ZP_04303523.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228607460|gb|EEK64787.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 189

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|23094404|emb|CAD28140.1| putative LuxR-like transcriptional regulator [Rhodococcus opacus]
          Length = 413

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  ++ GK +  IA  LGIS +T+  ++AS+++K     R  A A  ++  I
Sbjct: 345 LNPRELEVLAHLAVGKRNKAIATELGISESTIKFHVASVLKKLDVANRGEAGAIGIQAGI 404

Query: 246 V 246
           V
Sbjct: 405 V 405


>gi|83645434|ref|YP_433869.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
 gi|83633477|gb|ABC29444.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
          Length = 894

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E LT I EG  + +IA  L ++  TV  +I +I  K    +R+ A+A A    
Sbjct: 833 ELSKREMEVLTLIYEGLPNKKIADRLFLAPATVKAHIRNIYGKIGAASRTEALARARHLG 892

Query: 245 IV 246
           ++
Sbjct: 893 LL 894


>gi|78045671|ref|YP_361846.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034101|emb|CAJ21746.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 210

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 18/219 (8%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
            R+   D  +     + AL +  G      V  +    Q L   ++      ++  + + 
Sbjct: 4   RRIALADDQILVRAGLRALLQQQGVE----VVCEADDGQGLLDALTIHTVDVVLSDIRMP 59

Query: 94  EKDKYYNVLQRPT------ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             D     L++         +         + +   +    +   L           +  
Sbjct: 60  GLDG-IQALEQLRARGDRTPVLLLTTFDDSDLLLRASEAGAQGFLLKDAAPEDLREAIER 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +L+        ++         +            REV  L  ++ G ++ EIA
Sbjct: 119 VAAGDTLLQP-------VSTDPVRARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIA 171

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 172 RTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210


>gi|47569776|ref|ZP_00240448.1| two-component response regulator yocG [Bacillus cereus G9241]
 gi|47553572|gb|EAL11951.1| two-component response regulator yocG [Bacillus cereus G9241]
          Length = 189

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|298244448|ref|ZP_06968254.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297551929|gb|EFH85794.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1024

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 184  FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              L+ RE E L  ++ G+ + EIA  L +   TV  +I +I RK    +R  AIA A   
Sbjct: 962  IPLSWREREVLYLMATGRKNREIARELFVVTGTVKAHINNIYRKLNVNSRVQAIARAKTL 1021

Query: 244  NIV 246
            +++
Sbjct: 1022 HLL 1024


>gi|294636980|ref|ZP_06715302.1| putative csgAB operon transcriptional regulatory protein
           [Edwardsiella tarda ATCC 23685]
 gi|291089808|gb|EFE22369.1| putative csgAB operon transcriptional regulatory protein
           [Edwardsiella tarda ATCC 23685]
          Length = 214

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             LT RE+E +  + +G ++ +I+ +L IS NTV  +I +I +K A K R+ A+ +A
Sbjct: 152 LPLTLRELEVMKAMQQGASNQDISQMLYISENTVRTHIYNIFKKIAVKNRTQAVKWA 208


>gi|229822479|ref|YP_002884005.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568392|gb|ACQ82243.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 222

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 20/226 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSS 80
           +  R + +D        + AL E             GAS   LVR      +    +V  
Sbjct: 1   MTIRAVVVDDQALVRSGLRALLERAEDIEVAGEADDGASGVRLVR------ELRPDVVLM 54

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           D     V  +  + +      L+    +    F      +         +         +
Sbjct: 55  DIRMPGVDGLEATRRIVASPELRDVRVIVLTTFDDDELVLGAIRAGAAAFLLKDASPEDL 114

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           R  + ++     ++         +LA   A+     D     D  +T RE E L  ++ G
Sbjct: 115 RAAVRVVAAGDALLAPAVTR--TVLARVAASTGVDADATARLD-RITDREREVLAAVARG 171

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++DEIA  L +S  T   Y++ ++ K   + R+  +  A    +V
Sbjct: 172 LSNDEIAGELFLSPATARTYVSRLLTKLDARDRAQLVVLAYEAGLV 217


>gi|119489383|ref|ZP_01622163.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119454656|gb|EAW35802.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 219

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 4/158 (2%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           VR   +       ++ Q+  +    V  T  ++      M N    Y         +   
Sbjct: 55  VRMPIMDGVAATRSLSQQLPQTKVLVLTTFDDDEYITKAMKNGAKGYLLKDTPSEELAQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++          L+E  + A        S      +   LT RE+E L  I +G ++
Sbjct: 115 IRAVYKGYTQFGPG-LFEKVVAANTGNFSSSSSTQPPPEFKRLTPRELEVLKLIGKGYSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            EIA  L I+  TV N+++S++ + + + R+ A   A 
Sbjct: 174 KEIAQTLYITERTVKNHVSSLLSRLSLRDRTQAALLAA 211


>gi|148554913|ref|YP_001262495.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148500103|gb|ABQ68357.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 278

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + L+ +G L        ++ D        LT  EV CL W++ GKT DEIA I+G +R T
Sbjct: 173 ETLYLLGHLFIEGYARLETGDRWLPDAVTLTRLEVNCLRWVARGKTDDEIATIMGRARPT 232

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  ++ +   K     RS A+  A +   +
Sbjct: 233 IRFHLQNAAIKLGAANRSQAVFRAGQLGYL 262


>gi|87124675|ref|ZP_01080523.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9917]
 gi|86167554|gb|EAQ68813.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9917]
          Length = 188

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 36/58 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ +E+E +  +++G ++ EI+  L +S  TV +++ SI  K A ++R+ A   A +
Sbjct: 123 DLSKKELEVIYILADGLSNKEISEQLFVSIETVKSHLNSIYSKLAVRSRAQAAILASK 180


>gi|326330233|ref|ZP_08196544.1| response regulator, two-component system [Nocardioidaceae bacterium
           Broad-1]
 gi|325952046|gb|EGD44075.1| response regulator, two-component system [Nocardioidaceae bacterium
           Broad-1]
          Length = 218

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 4/140 (2%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +  P  +       L E +        R   L      + +  +     G  ++   +  
Sbjct: 75  VTDPMAVVVITTFDLDEYVLGALRAGARGFLLKDAGPELLVQAIHAAADGDALIAPNVTR 134

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             LLA +     ++  V       LT RE + L  ++ G+T+ EI+  L +S +TV  ++
Sbjct: 135 R-LLATFAD---QAPAVPVQPVDPLTEREEQVLALVARGRTNAEISTELFVSLSTVKTHV 190

Query: 222 ASIMRKTATKTRSGAIAYAV 241
           AS+M K  T+ R     +A 
Sbjct: 191 ASLMTKLGTRNRVEIAMWAY 210


>gi|288959031|ref|YP_003449372.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911339|dbj|BAI72828.1| two-component response regulator [Azospirillum sp. B510]
          Length = 244

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 14/155 (9%)

Query: 97  KYYNVLQRPTELFCPV-FHTLPENITPPAGMD------NRYCSLTFDVARIRIGLMLLFP 149
                L+R  E    V    L  +      +D        Y   T     +   + L   
Sbjct: 91  GAIPGLRRLKETLGDVPVLILTNSDEVADIVDSVRMGARGYVLKTSPPEVLEHAISLALS 150

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               +   R     +L    A   +  D    +   LT R+ +    +  G ++ EIA  
Sbjct: 151 GDIFLPLPR----AVLNGALAEGPQGGDDILDR---LTDRQRDVFELLLAGHSNKEIARG 203

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LG+   TV  ++ +IM+K   + R+     A RN 
Sbjct: 204 LGVLEGTVKVHVRAIMQKLGVRNRTQVAVVAARNG 238


>gi|284029937|ref|YP_003379868.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809230|gb|ADB31069.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 219

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +L+      +  D L    +       +             LT RE E    +  G ++ 
Sbjct: 116 LLVEAVRAAVSGDTLISPQVTVRLLEQLRHRRSGPLPDKAALTDREREITMLVGRGLSNA 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L IS  TV  ++A+I RK + ++R G  A+A +  
Sbjct: 176 EIATELFISVGTVKTHVANIQRKLSARSRVGIAAWAWQTG 215


>gi|239817406|ref|YP_002946316.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803983|gb|ACS21050.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 224

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 19/165 (11%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFDVARI 140
              +  +A+SE D    V             T  ++         ++     +   +AR 
Sbjct: 74  HPHIDAIAMSETDDDGLVGAAIAAGAVGYVLTEADDAELAFLLRSIERGGAPVDSRIARR 133

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            +GL     + + I               A       +  GK   L+ RE++ L  I++G
Sbjct: 134 ILGLFAASAQPKPI---------------AIHPVPASLAEGKPL-LSPRELKVLRLIAQG 177

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ +IA  + +S NT+  +  +I RK + K+R+ A+  A +  +
Sbjct: 178 WSNQQIAEAVSLSVNTIEFHAKNIYRKLSVKSRTQAVHQATQQGL 222


>gi|238919142|ref|YP_002932656.1| nitrate/nitrite response regulator protein NarP [Edwardsiella
           ictaluri 93-146]
 gi|238868710|gb|ACR68421.1| nitrate/nitrite response regulator protein NarP [Edwardsiella
           ictaluri 93-146]
          Length = 215

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 17/194 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           ++V       + +  ++  D  F +V   +   +        +P   L       L    
Sbjct: 14  MIVDDHPLMRRGVRQLLELDSVFSVVAEASNGSEAIALAGRSQPDLILLDLNMKGLSGLD 73

Query: 121 TPPA----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           T  A    G+D R   LT   AR  +  ++       +L+D   E  L    QA   +S 
Sbjct: 74  TLKALRSEGIDARIIILTVSDARSDVYALVDAGADSYLLKDSEPEALLAQIRQAAEGRSV 133

Query: 177 ------------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                               +LT RE++ L  +  G ++ +IA  L IS  TV  +I ++
Sbjct: 134 FSESVSAYLSTRSEIADPLADLTERELDVLQEVVRGMSNKQIAAQLHISEETVKVHIRNL 193

Query: 225 MRKTATKTRSGAIA 238
           +RK   ++R  A  
Sbjct: 194 LRKLNVRSRVAATV 207


>gi|223042639|ref|ZP_03612688.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Staphylococcus capitis SK14]
 gi|222444302|gb|EEE50398.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Staphylococcus capitis SK14]
          Length = 218

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          +     L   V  +  G   +         D      L+  +    
Sbjct: 91  FHVLKSGAKGYILKNAPDEQLILAVRTVYKGETYV---------DMKMTTSLVNEFINQS 141

Query: 173 FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            +    +    F+ L+ RE+E L  I++G  + +IA  L +S  TV  +   IM K   K
Sbjct: 142 HQEEVSYSSDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMNKLNLK 201

Query: 232 TRSGAIAYAVRNNIV 246
           ++   + YA++  ++
Sbjct: 202 SKPELVEYALKKKLL 216


>gi|182415000|ref|YP_001820066.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842214|gb|ACB76466.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 215

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +AA   N+  +       DF LT RE E L  ++E  ++ EIA  LGIS  TV+N+  +
Sbjct: 128 AVAALLRNVVANPSASNTADF-LTDREREILQLVAESHSTKEIAAKLGISIKTVDNHRTN 186

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +MRK      +    YA+   ++
Sbjct: 187 LMRKLNLHDVASLTRYALEVGLI 209


>gi|126698866|ref|YP_001087763.1| two-component response regulator [Clostridium difficile 630]
 gi|255100287|ref|ZP_05329264.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306226|ref|ZP_05350398.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115250303|emb|CAJ68125.1| Two-component response regulator [Clostridium difficile]
          Length = 215

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    + LT +E+  +  I+ G  + EI+  L +S  T+ N I +I+ K   + R+    
Sbjct: 146 HLYDMYNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITNILAKLELRDRTQLAI 205

Query: 239 YAVRNNIV 246
           +A +N IV
Sbjct: 206 FAFKNKIV 213


>gi|328950846|ref|YP_004368181.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451170|gb|AEB12071.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 192

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E LT ++ G T+ E+A  L +S +TV +++  +  K   + R  A+  A +  
Sbjct: 131 ELTAREREVLTLLARGMTAKEMARYLNLSPDTVRDHLKRLYGKLDARGRVEALVRARQLG 190

Query: 245 IV 246
           ++
Sbjct: 191 LI 192


>gi|218549608|ref|YP_002383399.1| transcriptional regulator NarP [Escherichia fergusonii ATCC 35469]
 gi|218357149|emb|CAQ89784.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia fergusonii ATCC 35469]
 gi|325498005|gb|EGC95864.1| transcriptional regulator NarP [Escherichia fergusonii ECD227]
          Length = 216

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           ++  +          D+   SL   + +   G  +   +    LR+R             
Sbjct: 97  IYALIDAGADGYLLKDSEPESLLAAIQKGANGGKVFSARVSEYLRER------------- 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA  L IS  TV  +I +++RK   +
Sbjct: 144 --ERFGSKDDPFSTLTERELDVLHELAKGLSNKQIASALNISEQTVKVHIRNLLRKLNVR 201

Query: 232 TRSGAIAYAVRNN 244
           +R  A    +++ 
Sbjct: 202 SRVAATILFLQHR 214


>gi|297202407|ref|ZP_06919804.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197710072|gb|EDY54106.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 213

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 5/167 (2%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           P  ++  + +   D        V +   ++       L E +            L    A
Sbjct: 48  PDLVLMDVQMPRLDGVSATREVVAEGLADVLVLTTFDLDEYVFGALRAGAVGFLLKNTEA 107

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           +  I  +    +G  I+   +    L+A + A   +   V       LT RE E L+ + 
Sbjct: 108 KDLIEAVRTVARGEGIVAPAVTRR-LIAEFAARPVRGTSVDPAVLDTLTRREREVLSCLG 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG ++ +IA  L ++  TV  +++ ++ K   ++R  A   A    +
Sbjct: 167 EGLSNADIAERLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGV 213


>gi|91776114|ref|YP_545870.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91710101|gb|ABE50029.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 311

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 15/148 (10%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +A     +Y++          P+            G ++   ++     R+   L 
Sbjct: 158 WQTPLARDWMQRYFSASDIDPVTLTPLAVLKWLANLREDGKESMPLTIVQGSGRLVFSLA 217

Query: 146 LLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            L  + +  IILR+      + A  Q              F LT RE E L W  +GKT+
Sbjct: 218 DLNAEEQWIIILREESDAAQIEALMQT-------------FGLTQRESEVLYWAIKGKTN 264

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATK 231
            +I  ILG S  TVN ++  +  K   +
Sbjct: 265 RDIGDILGTSPRTVNKHMEHVFAKLGVE 292


>gi|52140211|ref|YP_086620.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51973680|gb|AAU15230.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 200

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   + ++E  K  N       +    F              + Y         +   
Sbjct: 57  MPIQSGLDVAETLKKENSA--CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAS 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R I +D ++ +                 W +   L+ RE E L    EGKT+
Sbjct: 115 IRNVMKGKREISQDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTA 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 158 NEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|330964999|gb|EGH65259.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 785

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  I++G ++ EI+  L IS +TV  + + I  K   + R+ A+A A    +
Sbjct: 724 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 783

Query: 246 V 246
           +
Sbjct: 784 L 784


>gi|297564548|ref|YP_003683520.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296848997|gb|ADH62012.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 204

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E E LT ++ G ++  IA  LG+S  T+  +++S++ K   K R+ A   A    +
Sbjct: 145 LTPKEREVLTHLARGMSNKAIAQALGVSEKTIKTHVSSLLAKLNLKGRTQAALLAREQGL 204


>gi|297196109|ref|ZP_06913507.1| two-component system regulatory protein [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719414|gb|EDY63322.1| two-component system regulatory protein [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 222

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 56/175 (32%), Gaps = 2/175 (1%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           Q L  I   D    +V  +  + +      L     +    +                + 
Sbjct: 45  QHLPDIALIDIQMPVVDGIEATRRIAADPALAGVHVVILTNYGFDEYVFEALRAGAAGFL 104

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                       + +      ++      +  L+  Y      +   +     ELT RE 
Sbjct: 105 VKDIVPEDFLHAVRVAARGDALLAPSITRK--LIDRYVNQPLHTGSGNGTGLEELTNRER 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +  +++G ++++IA  + IS  T   ++   M K   + R+  +  A  + +V
Sbjct: 163 EAVALVAQGLSNEQIADRMVISPLTAKTHVNRAMAKLHARDRAQLVILAYESGLV 217


>gi|324114391|gb|EGC08360.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 214

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 15/133 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           ++  +          D+   SL   + +   G  +   +    LR+R             
Sbjct: 95  IYALIDAGADGYLLKDSEPESLLAAIQKGANGGKVFSARVSEYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA  L IS  TV  +I +++RK   +
Sbjct: 142 --ERFGSKDDPFSTLTERELDVLHELAKGLSNKQIASALNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIAYAVRNN 244
           +R  A    +++ 
Sbjct: 200 SRVAATILFLQHR 212


>gi|256790252|ref|ZP_05528683.1| LuxR family two-component response regulator [Streptomyces lividans
           TK24]
 gi|289774125|ref|ZP_06533503.1| LuxR family two-component system response regulator [Streptomyces
           lividans TK24]
 gi|289704324|gb|EFD71753.1| LuxR family two-component system response regulator [Streptomyces
           lividans TK24]
          Length = 233

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 3/168 (1%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V +  P   V  + L + D      +  +++       L       A +D+        V
Sbjct: 55  VPALRPDVAVLDVRLPDGDGVTVCRELRSQMPDLACLMLTSFDDEEALLDSIMAGAAGYV 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECL 194
            +   G  L+     +     L +        A +         +      LT RE E L
Sbjct: 115 LKQIQGSDLVSAVRTVARGQSLLDASATTKLMARLRGGGQQPAEEPEMLPGLTDREREIL 174

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A +
Sbjct: 175 ELIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQ 222


>gi|153940488|ref|YP_001390741.1| LuxR family DNA-binding response regulator [Clostridium botulinum F
           str. Langeland]
 gi|152936384|gb|ABS41882.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           F str. Langeland]
 gi|295318814|gb|ADF99191.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           F str. 230613]
          Length = 217

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         I  G+        ++  D    I L   Y+  +    D      + L
Sbjct: 100 ASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKEL---NDDDISLKYNL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NNIV
Sbjct: 157 TEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIV 216


>gi|145640801|ref|ZP_01796383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|148826630|ref|YP_001291383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittEE]
 gi|229845772|ref|ZP_04465884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           7P49H1]
 gi|145274315|gb|EDK14179.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.4-21]
 gi|148716790|gb|ABQ99000.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittEE]
 gi|229810776|gb|EEP46493.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           7P49H1]
          Length = 208

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           LL+       + +  +V  D  F++V  ++   +     +   P   +       L    
Sbjct: 8   LLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGLD 67

Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-----------RLWEIGLL 165
           T       G+D R   LT   A+  I  ++       +L+D           R+ +  ++
Sbjct: 68  TLKGLRAEGIDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQGEVI 127

Query: 166 AAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            +           H     + LT RE+  L  I+ G ++ +IA  L IS  TV  +I ++
Sbjct: 128 LSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNL 187

Query: 225 MRKTATKTRSGAIA 238
           +RK    +R  A  
Sbjct: 188 LRKLNVHSRVAATV 201


>gi|297156972|gb|ADI06684.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis
            BCW-1]
          Length = 1039

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%)

Query: 175  SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            +      +   LT RE + L  ++ G+++ +IA  L IS  T + ++++I+ K     R 
Sbjct: 958  AEPTDPAEALGLTPRERDVLRLVALGRSNRQIAEELFISPKTASVHVSNILAKLEVSGRG 1017

Query: 235  GAIAYAVRNNIV 246
             A A A R  +V
Sbjct: 1018 EAAAVAHRLRLV 1029


>gi|297156369|gb|ADI06081.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 280

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 14/159 (8%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           M  + + ++   +Q   +    V    PE             +L  +V      L  L  
Sbjct: 133 MEAARELEHSLAVQDEAQRLITVTQAQPEAD----------PALWEEVREAHGDLRALAQ 182

Query: 150 K-GRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     LR+R L   G LA  +A+   + D       EL+ REV+ L  ++ G T+   A
Sbjct: 183 QVTDPQLRERILSACGRLA--KASSGGTADTAARPGVELSPREVDVLACVASGATNSAAA 240

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             LG+   TV +Y+ S MRK    TR  A+  A R  ++
Sbjct: 241 DRLGLRPETVKSYLRSSMRKLGAHTRLHAVVEARRAGLL 279


>gi|289663521|ref|ZP_06485102.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 235

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           LL A  A   K       K  +      L+ RE + L+ +  G T+  +A  LGI+  TV
Sbjct: 146 LLPAMVAEPAKPIATRRRKPVQDDRLGALSKRERQVLSLLPRGLTNATLAAELGIAPGTV 205

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++  I++K   K R+ A  YAV++ +
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|148239259|ref|YP_001224646.1| two component system response regulator [Synechococcus sp. WH 7803]
 gi|147847798|emb|CAK23349.1| Two component system response regulator [Synechococcus sp. WH 7803]
          Length = 235

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 84/236 (35%), Gaps = 13/236 (5%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           +R +++  +  S L     ++         +S+ +     +  VGA+      ++L    
Sbjct: 7   SRANQEAIAQASELLKERRIVVVFGDRLALISFVLVDAIASSLVGAATTEDEGFELVLRT 66

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP--ENITPPAGMDNRY 130
           + D ++ S    DL     ++   +    L     L   V  T    +           +
Sbjct: 67  QPDLLICSS---DLESGYGINLLRRVKAELPTCQLLIVLVRETQAVVQEAMEAFADGVVF 123

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S         I  +     G +   +++  I              D+    + ELT RE
Sbjct: 124 KSSLGAGRGDLIKALRTLADGGVYFPEQIRRIAA-------STPQPDLPPLVE-ELTPRE 175

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E    ++ G  ++ IA +LG+S  TV +++ + M K   + R+     A+   ++
Sbjct: 176 LEVAAGVARGLKNNAIATLLGLSVETVKSHVGNAMDKLGARDRTQMAVTALLYGLI 231


>gi|42780178|ref|NP_977425.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC
           10987]
 gi|42736096|gb|AAS40033.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC
           10987]
          Length = 214

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 17/215 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK- 97
           +D        +  + E   +  F ++      E+ L  I     P  ++  + + +    
Sbjct: 8   VDDHFVVREGLKLIIET--SDSFQIIGEATNGEEALSFIEKKK-PDVILMDLNMPKMSGL 64

Query: 98  -YYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
               VL +  +   P+      N     +         Y     D        +    +G
Sbjct: 65  ETIEVLNK-KQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTD-RENLFRTLEAAIRG 122

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            I+L+  + E   +  Y+     +  V   ++  LT +E+  L  I+ G  + +IA  +G
Sbjct: 123 EILLQPNIMEK--IVNYKRKEIHANVV---EENNLTEKELFVLKAIARGNKNKDIAFDMG 177

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 178 IAERTVKAYLTNIYNKLGVNSRSEAVAVSIEKKLI 212


>gi|308067901|ref|YP_003869506.1| nitrate/nitrite response regulator protein narL [Paenibacillus
           polymyxa E681]
 gi|305857180|gb|ADM68968.1| Nitrate/nitrite response regulator protein narL [Paenibacillus
           polymyxa E681]
          Length = 212

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--- 176
           I    G  +++  LT    R              +L++ L E  + A +  N  + Y   
Sbjct: 67  IARGRGFRSKFILLTSSATREDFLKAEEASVDGYVLKEALPEELIYAIHLVNKGRKYYDP 126

Query: 177 --------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                   +       +LT +E E L  + +G  + EIA  L IS  TV  +++ I+ K 
Sbjct: 127 AILENKLREDAGNLSDDLTPKEKEVLVELGQGACNREIASRLFISEFTVKKHVSQILAKL 186

Query: 229 ATKTRSGAIAYAVRNNI 245
               R+ A  YA    +
Sbjct: 187 RLADRTQAALYANAIGL 203


>gi|269977463|ref|ZP_06184435.1| putative Nitrate/nitrite response regulator-like protein
           [Mobiluncus mulieris 28-1]
 gi|307700357|ref|ZP_07637397.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
 gi|269934379|gb|EEZ90941.1| putative Nitrate/nitrite response regulator-like protein
           [Mobiluncus mulieris 28-1]
 gi|307614568|gb|EFN93797.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
          Length = 229

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y + T     +   ++ +                 L
Sbjct: 92  KFLALSVSDAAEDVVAVIRAGARGYVTKTISTPDLVDSIIRVAEGDAAFSP-------RL 144

Query: 166 AAYQANMF---KSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           A +  + F   +S  V    + + LT RE E +  I+ G    EIA  L IS  TV +++
Sbjct: 145 AGFVLDAFGAARSEIVETDNELDSLTSREFEVMRLIARGYAYKEIASELYISVKTVESHV 204

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
           ++++RK     R     +A    I
Sbjct: 205 SAVLRKLQLSNRYELSRWAAERRI 228


>gi|254291301|ref|ZP_04962095.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|150422757|gb|EDN14710.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
          Length = 214

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L  Y    F+S+ V      +LT RE++ L  +  G ++ +IA  L IS  TV +++ 
Sbjct: 134 SQLLHYYRYAFQSHQVQAT--VDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLY 191

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I +K   K R  AIA+ V  N++
Sbjct: 192 QIFKKLNVKNRVKAIAW-VNQNLL 214


>gi|326792209|ref|YP_004310030.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM
           5427]
 gi|326542973|gb|ADZ84832.1| two component transcriptional regulator, LuxR family [Clostridium
           lentocellum DSM 5427]
          Length = 210

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   +    +     D  Y  L   V  +  G  ++  K   +L   ++    L      
Sbjct: 90  IVQAMAYGASGYLFKDMPYDQLAECVKEVHEGRFMMPQKVAEVLAKNIYAPEAL------ 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                       ++ T REV+    + +G T+ +IA  L IS  TV NY+++I  KT T+
Sbjct: 144 ------KKRENPYDFTEREVQIAEMMKDGFTNKQIAKTLYISEGTVKNYVSNIYAKTQTE 197

Query: 232 TRSGAI 237
            R  A 
Sbjct: 198 NRVEAA 203


>gi|295395667|ref|ZP_06805859.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971483|gb|EFG47366.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 223

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            F L+ RE E +  +++G  + +IA    +S  TV N+I  I  K    +R+ A++  ++
Sbjct: 163 QFGLSRRETEVMVLVADGLNNRQIAESFFLSEKTVKNHINRIFAKMNVTSRAEAVSIWLK 222

Query: 243 N 243
            
Sbjct: 223 R 223


>gi|288958558|ref|YP_003448899.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910866|dbj|BAI72355.1| two-component response regulator [Azospirillum sp. B510]
          Length = 213

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELT 187
            Y   +  V  +   L L+F  G  +    L      +   A   +S +V      + LT
Sbjct: 100 GYIPKSSSVKVMMGALNLVFSGGIYLPPGALTA----SMDAAPRRRSIEVTDRNAGYGLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            R+ E L  +  GK++ +IA  LG+S  TV  ++ +I +    K R+ 
Sbjct: 156 QRQREVLECLRLGKSNKQIAYELGLSEGTVKIHVTAIFKSLGVKNRTQ 203


>gi|229168156|ref|ZP_04295884.1| Response regulator receiver [Bacillus cereus AH621]
 gi|228615400|gb|EEK72497.1| Response regulator receiver [Bacillus cereus AH621]
          Length = 596

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L    F              + Y   + D   +   + L++  G +I +D L+     
Sbjct: 458 RVLILSTFQDTKRAKEIIRNGADGYLLKSIDSRELAESIRLIYRGGTMIDQD-LFHKMWD 516

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +    +      GK++ LT RE+E L  +S+G     IA  L +S  TV NY +++ 
Sbjct: 517 GNDEEESVELKSD--GKEYGLTKRELEVLNLLSQGIRYKTIASKLYLSNGTVRNYASTLY 574

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   K R  A+  A    ++
Sbjct: 575 DKLEVKNREEAVKKARDTGLL 595


>gi|42519536|ref|NP_965466.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|41583825|gb|AAS09432.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
          Length = 224

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 69/174 (39%), Gaps = 6/174 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           +  + P  ++  + +   D       V ++  ++   +  T  ++    + +    + Y 
Sbjct: 43  IEKNKPDVILMDVRMPVMDGTVCTKYVKEKYPDIKVIILTTFDDDDFIFSALKYGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A +   +  +   G +I  D   ++  L +  A    +  V+  +  + +  E 
Sbjct: 103 LKGGSPADLFTAIRTVAQGGAMINPDITEKVFRLFSKMAQANYTISVNDQETKDFSKSEW 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +  +  G ++ EI+  L +S  TV NYI+ I+ K   + R+    +AV+  +
Sbjct: 163 CVIQQVGLGLSNKEISTKLFLSEGTVRNYISKILEKLNLRDRTQLAIWAVQTGV 216


>gi|289670915|ref|ZP_06491990.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 235

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           LL A  A   K       K  +      L+ RE + L+ +  G T+  +A  LGI+  TV
Sbjct: 146 LLPAMVAEPAKPIATRRRKPVQDDRLGALSKRERQVLSLLPRGLTNATLAAELGIAPGTV 205

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++  I++K   K R+ A  YAV++ +
Sbjct: 206 KVHVERILQKLEVKDRTQAAVYAVQSGL 233


>gi|251779454|ref|ZP_04822374.1| transcriptional regulator, LuxR family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083769|gb|EES49659.1| transcriptional regulator, LuxR family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 834

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  LT  E++ L  I++G ++ EI+  L I ++TV  +  +I  K   K R  AI  A 
Sbjct: 767 PEIYLTKSEIKILYLINKGMSNIEISEYLNIKKDTVKFHTKNIYSKLNVKNRIQAIKVAK 826

Query: 242 RNNIV 246
              I+
Sbjct: 827 EFGII 831


>gi|254491566|ref|ZP_05104745.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463044|gb|EEF79314.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 214

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    ++EGKT ++IA IL +S  TV  +  SI +K      +     A+R+ +
Sbjct: 152 LSQREFEVFRLLAEGKTVNDIADILSLSPKTVGTHHTSIKQKLNVSNSAELARLAIRSGL 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|215445032|ref|ZP_03431784.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T85]
 gi|289756976|ref|ZP_06516354.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T85]
 gi|294996369|ref|ZP_06802060.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis 210]
 gi|289712540|gb|EFD76552.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T85]
 gi|326904890|gb|EGE51823.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           W-148]
          Length = 882

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E + +  +SEG ++ +IA  L +S  TV  ++  +  K    +R   +  A R  
Sbjct: 821 LTPTERDVVRLVSEGLSNKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879


>gi|254384266|ref|ZP_04999609.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343154|gb|EDX24120.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 216

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L           +R   +   V  +  G  LLFP               + A  A 
Sbjct: 92  VYEALRAGADGFLLKRSRPSEIVHAVRLVAEGETLLFP-------------AAVRALAAE 138

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   LT RE   L  ++ G T+ EIA  L +   TV +++++I+ K   +
Sbjct: 139 YGNRGARAVLERAALTEREEAVLRLMARGLTNVEIASELIVGTETVKSHVSAILAKLGAR 198

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A  +  V
Sbjct: 199 DRTQAVIMAYESGFV 213


>gi|188588839|ref|YP_001922350.1| transcriptional regulator, LuxR family protein [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499120|gb|ACD52256.1| transcriptional regulator, LuxR family protein [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 834

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  LT  E++ L  I++G ++ EI+  L I ++TV  +  +I  K   K R  AI  A 
Sbjct: 767 PEIYLTKSEIKILYLINKGMSNIEISEYLNIKKDTVKFHTKNIYSKLNVKNRIQAIKVAK 826

Query: 242 RNNIV 246
              I+
Sbjct: 827 EFGII 831


>gi|258623282|ref|ZP_05718288.1| Glycerol metabolism activator [Vibrio mimicus VM573]
 gi|262171536|ref|ZP_06039214.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus
           MB-451]
 gi|258584414|gb|EEW09157.1| Glycerol metabolism activator [Vibrio mimicus VM573]
 gi|261892612|gb|EEY38598.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus
           MB-451]
          Length = 222

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 7/161 (4%)

Query: 86  LVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVAR 139
           L+  + +        +L+ R      PV     E+     +   A     Y + +    +
Sbjct: 52  LLLDLNMPGMAGLSGLLELRNVAPTTPVAVISAESDKQTVLQTLAYGAVGYVAKSCARQQ 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +      +      +  D L E  +  +   ++             LT ++++ L ++S+
Sbjct: 112 MGEAFAQILRGDVYLPADILREN-VKTSPNHSLRNQAGFSAETLQTLTRKQLQVLQFMSK 170

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G  + +IA  L IS  TV +++++I++K     R  A+  A
Sbjct: 171 GSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAVLGA 211


>gi|302531478|ref|ZP_07283820.1| two component system response regulator [Streptomyces sp. AA4]
 gi|302440373|gb|EFL12189.1| two component system response regulator [Streptomyces sp. AA4]
          Length = 225

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E+T RE E L  ++ G ++DEIA  L IS  T   +++ IM K   + R+  +  A  + 
Sbjct: 156 EVTEREREVLALVAGGLSNDEIAAHLVISAATARTHVSRIMTKIGARDRAQLVVLAYESG 215

Query: 245 IV 246
           +V
Sbjct: 216 LV 217


>gi|242372051|ref|ZP_04817625.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
 gi|242350163|gb|EES41764.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
          Length = 218

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          +     L   V  +  G   +         D      L+  +    
Sbjct: 91  FHVLKSGAKGYILKNAPDEQLILAVRTVYRGETYI---------DMKLTTSLVNEFINQS 141

Query: 173 FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            +    +    F+ L+ RE+E L  I++G  + EIA  L +S  TV  +   IM K   K
Sbjct: 142 NQEEVNYSSDPFKVLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLNLK 201

Query: 232 TRSGAIAYAVRNNIV 246
           ++   + YA++  ++
Sbjct: 202 SKPELVEYALKKKLL 216


>gi|115359004|ref|YP_776142.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284292|gb|ABI89808.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 227

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 156 RDRLWEIGLLAAYQ------ANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEI 206
            D L  +   A Y       A   +   V  G D     LT R+ + L  ++EGK++ +I
Sbjct: 113 ADALGRVAAGAIYVPPNDGGATQARPGGVPAGDDRAFERLTPRQRDVLRLLAEGKSNKQI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +L ++  T+ N++ ++ R+     R+ A  +  R+
Sbjct: 173 CRVLNVAEGTIKNHLYALFRQIGVSNRTEAALWLARH 209


>gi|311112352|ref|YP_003983574.1| two component system response regulator [Rothia dentocariosa ATCC
           17931]
 gi|310943846|gb|ADP40140.1| two component system response regulator [Rothia dentocariosa ATCC
           17931]
          Length = 215

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 36/230 (15%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++  +        +  L    G    ++   D      L   V +  P   +  + +  
Sbjct: 2   RIVIAEDQFLLRQGLENLFTRHGFE--VVAAVD--DGPSLTDAVLTHRPDVALIDIRMPP 57

Query: 95  KDKYYNVLQRPTELF-----CPVF-------HTLPENITPPAGMDNRYCSL--TFDVARI 140
                  L+   ++       PV            + +    G+   Y      FD A  
Sbjct: 58  TF-TDEGLRAAVQIRKQIPGQPVLILSQYVERLYVDELHMDGGLGTGYLLKDRVFDDAGF 116

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G ++  + L E+    A Q  + +           LT RE+E LT ++EG
Sbjct: 117 VRSVKAVAAGGVVVDPETLKELMEHRAVQQRLER-----------LTSRELEVLTLMAEG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKT------RSGAIAYAVRNN 244
            ++ +IA  L ++  TV  +I ++  K           R  A+ + +RN 
Sbjct: 166 LSNSDIAEKLFVAEKTVAKHINTLFAKLDLPDTNSNARRVQAVLHLLRNG 215


>gi|16080459|ref|NP_391286.1| two-component response regulator YvfT [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311357|ref|ZP_03593204.1| hypothetical protein Bsubs1_18471 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315684|ref|ZP_03597489.1| hypothetical protein BsubsN3_18387 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320599|ref|ZP_03601893.1| hypothetical protein BsubsJ_18350 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324884|ref|ZP_03606178.1| hypothetical protein BsubsS_18506 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312958|ref|YP_004205245.1| two-component response regulator YvfT [Bacillus subtilis BSn5]
 gi|81814911|sp|O07019|YVFU_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yvfU
 gi|1945721|emb|CAB07991.1| hypothetical protein [Bacillus subtilis]
 gi|2635919|emb|CAB15411.1| two-component response regulator [YvfT] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320019232|gb|ADV94218.1| two-component response regulator (YvfT) [Bacillus subtilis BSn5]
          Length = 200

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L   + GKT+ +I + L +S+ TV NYI+ I++K   K R+ A + A  
Sbjct: 137 ENPLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLNAKNRTEAASIAEE 196

Query: 243 NNIV 246
              +
Sbjct: 197 KGWI 200


>gi|312888670|ref|ZP_07748238.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311298837|gb|EFQ75938.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 313

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            F+LT  E+  + +I +GK++ EIA ++ IS NTV  ++ ++ RK   K+R+ A+ Y ++
Sbjct: 248 HFDLTRTEILIIQYIYKGKSNKEIADLMSISENTVKKHLQNVYRKVNVKSRA-ALIYTLQ 306

Query: 243 NN 244
           N+
Sbjct: 307 NH 308


>gi|297190907|ref|ZP_06908305.1| DNA-binding response regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297150671|gb|EDY66609.2| DNA-binding response regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 287

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 12/156 (7%)

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157
             +VL++       +   LP    P  G         FD   ++    +     + +LR 
Sbjct: 115 TASVLRQCLGTDHMLGLPLPGRSRPVRGFLIHRAGRDFDERALQYAAAV-----QPLLRA 169

Query: 158 RLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGREVECLTWISEGKTSDEIAVIL 210
              +  LL  Y A+  +  D            D  LT RE   L  ++EG  +  I   L
Sbjct: 170 AAAQHELLTDYAASGAEGGDPGAACPPAVRTSDLGLTPRETAVLRLLAEGLPAQTIGRRL 229

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  TV+ ++ S+ RK     R  A+  A R  ++
Sbjct: 230 HVSVRTVHKHLQSVYRKLDAPDRLSAVLNAQRLGLL 265


>gi|153215381|ref|ZP_01949979.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153829298|ref|ZP_01981965.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|229512672|ref|ZP_04402141.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21]
 gi|124114752|gb|EAY33572.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|148875198|gb|EDL73333.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|229350349|gb|EEO15300.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21]
          Length = 214

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  Y+   F+S+        +LT RE++ L  +  G ++ +IA  L IS  T
Sbjct: 129 PRHVSSQLLHYYRY-AFQSHQAQAT--VDLTAREIQILRCLQTGASNMQIAENLFISEFT 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V +++  I +K   K R  AIA+ V  N++
Sbjct: 186 VKSHLYQIFKKLNVKNRVKAIAW-VNQNLL 214


>gi|2367439|gb|AAB69646.1| LuxR homolog [Pectobacterium betavasculorum]
          Length = 242

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M +S      KD   + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K   
Sbjct: 164 EMIESKKQLHNKDI-FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 231 KTRSGAIAYAVRNNIV 246
                AI   V   ++
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|86146693|ref|ZP_01065014.1| response regulator [Vibrio sp. MED222]
 gi|218676377|ref|YP_002395196.1| Nitrate/nitrite response regulator protein homolog [Vibrio
           splendidus LGP32]
 gi|85835540|gb|EAQ53677.1| response regulator [Vibrio sp. MED222]
 gi|218324645|emb|CAV26216.1| Nitrate/nitrite response regulator protein homolog [Vibrio
           splendidus LGP32]
          Length = 210

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 40/85 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+         ++  A      D       +LT RE++ L  +++G  + +IA  L IS
Sbjct: 116 LLKQAHSGDKAYSSVVARYLNDADSRNDIFDQLTEREMQILQEVAKGYRNKQIADHLFIS 175

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 176 ESTVKVHMKSLLKKLQVPSRTAATV 200


>gi|330821298|ref|YP_004350160.1| PAS/PAC domain protein [Burkholderia gladioli BSR3]
 gi|327373293|gb|AEA64648.1| PAS/PAC domain protein [Burkholderia gladioli BSR3]
          Length = 541

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 1/117 (0%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189
                D++  +   M L       ++D  W    L    AN+ +      G    +LT R
Sbjct: 384 LLALLDISERKRTEMELIQAIETAMQDASWFSRTLIEKLANVRRDKAPDAGAQLADLTAR 443

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +    +  G    EIA  LG++ NTV N++++I  K    +R  AI +A    IV
Sbjct: 444 ERDVFDLLCHGLPDKEIANRLGLAPNTVRNHVSTIYNKLDVHSRGEAIVWARERGIV 500


>gi|289705063|ref|ZP_06501474.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58]
 gi|289558226|gb|EFD51506.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58]
          Length = 232

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 10/154 (6%)

Query: 101 VLQRPTELFC--PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-- 156
           + +RP + F    V     + +         Y + T   A +    + +     +     
Sbjct: 77  LARRPAQRFLALSVSDAAEDVVAVIRAGARGYITKTASGAEVADAAVRVADGDAVFSPRL 136

Query: 157 -----DRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVIL 210
                D        +        S      +D + L+ RE E +  I+ G T  E    L
Sbjct: 137 AGFVLDAFRGTAPASPPVPAAATSGAAAPDEDLDRLSAREREVMRLIARGYTYREAGAEL 196

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IS  TV  +++S++RK     R     +A R  
Sbjct: 197 FISDRTVETHVSSVLRKLQLSNRHELTRWAARRG 230


>gi|239983155|ref|ZP_04705679.1| LuxR family transcriptional regulator [Streptomyces albus J1074]
 gi|291454986|ref|ZP_06594376.1| LuxR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291357935|gb|EFE84837.1| LuxR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 275

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 56/163 (34%), Gaps = 6/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V    LS        +++         H L     PP        +   +V  I   L  
Sbjct: 115 VGDRTLSAAVAAARDIEQALVAREEAAHLLSRAGEPPRTSS---PAAWEEVREIHGELRT 171

Query: 147 LFPK-GRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     LR  L      L  A Q                LT REV+ L  ++ G T+
Sbjct: 172 LAGRLPDPALRAELLAACTRLARAGQPGAVAPPGAPKLPPTVLTPREVDVLVCVAGGATN 231

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +A  LG+   TV  Y+ S MRK    TR  A+  A R  ++
Sbjct: 232 AAVAGRLGVRPETVKGYLRSAMRKLGAHTRLEAVVAARRQGLL 274


>gi|148272422|ref|YP_001221983.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830352|emb|CAN01286.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 224

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 5/156 (3%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L        + +   ++   V  T   + +    ++          A        +    
Sbjct: 64  LDGVGATARIREEAPDVRVLVLTTYETDASILTAIEAGASGYLLKAAPEE----EILAGV 119

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVIL 210
           R + R  +     +AA                   L+ RE E L  ++ G+T+  IA  L
Sbjct: 120 RAVARGEVALAPAIAAALVRQVGRPAAGPATPTPTLSPRETEVLALVAAGRTNARIAREL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 180 HVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLL 215


>gi|15896192|ref|NP_349541.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025991|gb|AAK80881.1|AE007791_1 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510347|gb|ADZ21983.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 215

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  +          D  Y  +   V  +  G +++ P+             +++     
Sbjct: 92  IFEAMKNGANGYILKDTSYEIIIDAVKSVYKGNVVVNPEI---------ASKMVSGVMKT 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S ++   + ++LT R++E +  I  G ++ EIA    ++  TV N+I  I+ K   +
Sbjct: 143 SPSSNEIK--EKYKLTDRQIEIIIAIGSGLSNKEIAEKQYVTEGTVKNHITEILSKLEMR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R+    +A++N +V
Sbjct: 201 DRTQIAIFALKNELV 215


>gi|312868047|ref|ZP_07728251.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096451|gb|EFQ54691.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
          Length = 228

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 68/170 (40%), Gaps = 6/170 (3%)

Query: 82  WPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTF 135
            P  ++  + +   D       V +   ++   +  T  ++    + +    + Y     
Sbjct: 48  HPDLILMDIRMPGMDGVLATKEVKEHYPDIKIIILTTFDDDEFIYSALKYGASGYLLKGA 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + +++  G +I  +   ++  + +  A    S  V      +L+  E   + 
Sbjct: 108 STEELYEAIKVVYQGGAMINPNIASKVFQIFSQMAKSNFSIAVDEDNVKDLSTTEWRIIQ 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  G+++ EIA  L +S  TV NY+++I+ K   + R+    ++V+  +
Sbjct: 168 EVGYGESNKEIAAKLFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQTGV 217


>gi|54025004|ref|YP_119246.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016512|dbj|BAD57882.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 218

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VFH L          D R       V     G  LL P     L DR     L A  +  
Sbjct: 92  VFHALRAGAAGFLVKDIRPEDFLHAVRVAARGDALLAPSITRRLIDRFVTEPLAADVET- 150

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE E +   + G ++DEIA  + IS  T   +I   M K   +
Sbjct: 151 ------------AGLTTREREAVVLAARGLSNDEIAERMVISPLTAKTHINRAMTKLHAR 198

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A  + +V
Sbjct: 199 DRAQLVIRAYESGLV 213


>gi|291447955|ref|ZP_06587345.1| LuxR-family transcriptional regulator [Streptomyces roseosporus NRRL
            15998]
 gi|291350902|gb|EFE77806.1| LuxR-family transcriptional regulator [Streptomyces roseosporus NRRL
            15998]
          Length = 1092

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 184  FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            F LT RE +    ++ G T+ +IA  L IS  T + ++++I+ K    +R  A A A R 
Sbjct: 1027 FGLTPREQDVHRLVAAGHTNRKIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRL 1086

Query: 244  NI 245
             +
Sbjct: 1087 RL 1088


>gi|253996742|ref|YP_003048806.1| two component LuxR family transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983421|gb|ACT48279.1| two component transcriptional regulator, LuxR family [Methylotenera
           mobilis JLW8]
          Length = 212

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 63/182 (34%), Gaps = 16/182 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSE---KDKYYNVLQRPTELFCPVFHTLPENITP---PA 124
           EQ +   V    P  +V  + +      +    +L + +     V     +++ P     
Sbjct: 39  EQAIQRYVE-HKPDVVVMDITMPGIGGLEAIERILAKDSNAKILVLSAHEDSVHPKRVLN 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   +  +    + +           +  Q    +          
Sbjct: 98  AGAMGYLTKRSAAEELIKAIRTVAGGKKYLEA---------SVAQQMAIQQLSGDQNPVD 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E    +++GKT++EIA  L +S  TV  ++ +I +K      +     A+R+ 
Sbjct: 149 VLSPREFEVFMALAKGKTTNEIAETLFLSPRTVGTHLYNIKQKLNANNSAEIALIAMRSG 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|226941833|ref|YP_002796907.1| two-component response regulator [Laribacter hongkongensis HLHK9]
 gi|226716760|gb|ACO75898.1| Probable two-component response regulator [Laribacter hongkongensis
           HLHK9]
          Length = 196

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +GLL     N      +  G    LT RE E +  +  G  + EIA  L IS NTV  ++
Sbjct: 118 LGLLCMQVGNHLSRDGID-GPGALLTEREREVVQALRRGLANKEIARELDISENTVKKHL 176

Query: 222 ASIMRKTATKTRSGAIAY 239
           +S+ +K   + R   +  
Sbjct: 177 SSVFQKLGVEDRLQLLIK 194


>gi|168180051|ref|ZP_02614715.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           NCTC 2916]
 gi|182669120|gb|EDT81096.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           NCTC 2916]
          Length = 217

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         I  G+        ++  D    I L   Y+  +    D      + L
Sbjct: 100 ASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKEL---NDDDISLKYNL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NNIV
Sbjct: 157 TEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIV 216


>gi|187478442|ref|YP_786466.1| two-component response regulator [Bordetella avium 197N]
 gi|115423028|emb|CAJ49559.1| putative two-component response regulator [Bordetella avium 197N]
          Length = 225

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            LA    + F++  V    +   L+ RE + L  ++ G  + EIA  L +SR TV  ++ 
Sbjct: 141 FLARRLLHEFRTPLVGQADNTGPLSPREAQILRLVASGLGNREIAEQLHLSRYTVERHVK 200

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            + RK    +R+ AI  A    ++
Sbjct: 201 HVYRKLLVSSRTQAIHAARVRGLL 224


>gi|86750181|ref|YP_486677.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86573209|gb|ABD07766.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 217

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R +L  R+    LL   Q    ++       +  L  ++ + L  + +G T+ EI
Sbjct: 116 LETAIRDVLAGRIVLDPLL---QKGAPRARTAAAESEITLGSQQKKVLALLVKGFTNSEI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  LGIS  T   ++++I+ K     R+ A   AVR NIV
Sbjct: 173 AERLGISLPTARYHVSAILVKLGASNRAEAAGLAVRLNIV 212


>gi|326329878|ref|ZP_08196194.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325952315|gb|EGD44339.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 221

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +     +    SL   V     G  LL P+        +  IG + ++ A  
Sbjct: 90  FDALAAGASGFLLKNADPDSLAEAVRAAADGHALLAPEV------TMRVIGRVTSHNAPT 143

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE E L  I EG +++EIA  L ++  TV  ++++ + K   + 
Sbjct: 144 APRPPKELDL---LTAREREVLLLIGEGLSNNEIARRLYLTEATVKTHVSACLAKLQLRD 200

Query: 233 RSGAIAYAVRNNIV 246
           R   + +  R+ ++
Sbjct: 201 RVQTVVFIHRHGLL 214


>gi|297563838|ref|YP_003682811.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848287|gb|ADH70305.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 206

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 14/165 (8%)

Query: 84  FDLVRCMALSEKDKYYNVLQRP--TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
            DL   +            +RP    L    F +  + +         Y         + 
Sbjct: 53  MDLRIPVLSGVGAIAVLSRERPDVRVLVLTTFDSESDVLPAIEAGATGYLLKDASPDELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +     ++    +  +               V       L+ RE++ L  +++G 
Sbjct: 113 RGVRAVHRGESVLAPTAVRHLM------------GQVRRPAGQSLSDRELQVLGLVADGA 160

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++   A  L IS  ++  ++  +  K   + R+ A+A A R  ++
Sbjct: 161 SNRAAAARLFISEASIKTHLQHVYNKLGVRDRAAAVAEAYRRGLL 205


>gi|134093850|ref|YP_001098925.1| putative two-component system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133737753|emb|CAL60798.1| putative two-component system response regulator LuxR family
           [Herminiimonas arsenicoxydans]
          Length = 232

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   L    T     +     +   +  +  G   + P     + D L    +       
Sbjct: 108 ILAALRAGATGYVLKERDDMEVALSIRSVLRGGAPIDPFIARRIIDELRPKTM------- 160

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                      +  L+ RE E L  +++G  + EI+  L +SR T+  +I  I RK A  
Sbjct: 161 ----PHEKAPNNETLSPRESEILGLVAQGLANREISEQLHLSRYTIECHIKHIYRKLAVS 216

Query: 232 TRSGAIAYAVRNNIV 246
           +R+ AI  A    ++
Sbjct: 217 SRTKAIHEARSRGLL 231


>gi|15840308|ref|NP_335345.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           CDC1551]
 gi|31792078|ref|NP_854571.1| LuxR family transcriptional regulator [Mycobacterium bovis
           AF2122/97]
 gi|121636813|ref|YP_977036.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148660668|ref|YP_001282191.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|148822100|ref|YP_001286854.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           F11]
 gi|167968338|ref|ZP_02550615.1| hypothetical transcriptional regulatory protein, luxR-family
           [Mycobacterium tuberculosis H37Ra]
 gi|215402688|ref|ZP_03414869.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           02_1987]
 gi|215410477|ref|ZP_03419285.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426158|ref|ZP_03424077.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T92]
 gi|215429747|ref|ZP_03427666.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           EAS054]
 gi|218752554|ref|ZP_03531350.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           GM 1503]
 gi|224989284|ref|YP_002643971.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|254363821|ref|ZP_04979867.1| hypothetical transcriptional regulatory protein (probably
           luxR-family) [Mycobacterium tuberculosis str. Haarlem]
 gi|254549867|ref|ZP_05140314.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260204093|ref|ZP_05771584.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis K85]
 gi|289573518|ref|ZP_06453745.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           K85]
 gi|289744621|ref|ZP_06503999.1| transcriptional regulatory protein, luxR-family [Mycobacterium
           tuberculosis 02_1987]
 gi|289749412|ref|ZP_06508790.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           T92]
 gi|289752945|ref|ZP_06512323.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           EAS054]
 gi|289761024|ref|ZP_06520402.1| transcriptional regulatory protein (probably luxR-family)
           [Mycobacterium tuberculosis GM 1503]
 gi|298524383|ref|ZP_07011792.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775016|ref|ZP_07413353.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu001]
 gi|306783561|ref|ZP_07421883.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu003]
 gi|306787927|ref|ZP_07426249.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu004]
 gi|306796663|ref|ZP_07434965.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu006]
 gi|306802551|ref|ZP_07439219.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu008]
 gi|306966928|ref|ZP_07479589.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu009]
 gi|306971124|ref|ZP_07483785.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu010]
 gi|307078852|ref|ZP_07488022.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu011]
 gi|38258680|sp|P59969|Y914_MYCBO RecName: Full=Putative HTH-type transcriptional regulator Mb0914c
 gi|13880470|gb|AAK45159.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis
           CDC1551]
 gi|31617666|emb|CAD93775.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY)
           [Mycobacterium bovis AF2122/97]
 gi|121492460|emb|CAL70928.1| Probable transcriptional regulatory protein (probably luxR-family)
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|134149335|gb|EBA41380.1| hypothetical transcriptional regulatory protein (probably
           luxR-family) [Mycobacterium tuberculosis str. Haarlem]
 gi|148504820|gb|ABQ72629.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|148720627|gb|ABR05252.1| hypothetical transcriptional regulatory protein, luxR-family
           [Mycobacterium tuberculosis F11]
 gi|224772397|dbj|BAH25203.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289537949|gb|EFD42527.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           K85]
 gi|289685149|gb|EFD52637.1| transcriptional regulatory protein, luxR-family [Mycobacterium
           tuberculosis 02_1987]
 gi|289689999|gb|EFD57428.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           T92]
 gi|289693532|gb|EFD60961.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           EAS054]
 gi|289708530|gb|EFD72546.1| transcriptional regulatory protein (probably luxR-family)
           [Mycobacterium tuberculosis GM 1503]
 gi|298494177|gb|EFI29471.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216369|gb|EFO75768.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu001]
 gi|308331660|gb|EFP20511.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu003]
 gi|308335381|gb|EFP24232.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu004]
 gi|308342922|gb|EFP31773.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu006]
 gi|308350664|gb|EFP39515.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu008]
 gi|308355324|gb|EFP44175.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu009]
 gi|308359263|gb|EFP48114.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu010]
 gi|308363173|gb|EFP52024.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           SUMu011]
 gi|323720599|gb|EGB29677.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
          Length = 882

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E + +  +SEG ++ +IA  L +S  TV  ++  +  K    +R   +  A R  
Sbjct: 821 LTPTERDVVRLVSEGLSNKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879


>gi|323344011|ref|ZP_08084237.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323094740|gb|EFZ37315.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 213

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +  IR  L       R I + R+ E+ L+           +    +  +LT  E E L 
Sbjct: 107 PLQEIREALSFAMRGRRFICQ-RMTELLLV----------PETREQEQVKLTRTETEVLK 155

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G T+ EIA     S +TVN +  +I RK        A  YA+R  +V
Sbjct: 156 DIALGMTTREIAEKRFSSFHTVNTHRKNIFRKLGVNNVHEATKYALRAGLV 206


>gi|297195101|ref|ZP_06912499.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152625|gb|EFH31883.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 5/144 (3%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           + P  +    F                +         +   + L+     ++    +  +
Sbjct: 77  EPPRIVVVTTFENDSYVYDALRAGAAGFLLKRAGADELVQAVRLVARSDSLLFPAAVRSL 136

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                 +  +     V       LTGRE E L  ++ G T+ EIA  +G+   T   ++A
Sbjct: 137 AAEYGRREAVTAPPWVAR-----LTGREAEVLRLMATGLTNAEIAGRMGVGPATTKTHVA 191

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K   + R+ A+  A  +  +
Sbjct: 192 AVLGKIGARDRTQAVIAAYESGFI 215


>gi|297627348|ref|YP_003689111.1| Two component transcriptional regulator, LuxR family
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923113|emb|CBL57700.1| Two component transcriptional regulator, LuxR family
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 220

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 17/138 (12%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D R   L   +  +  G  ++ P     L D             +
Sbjct: 93  VFAALKAGASGFLLKDTRPADLLSAIRAVAAGDSVVAPSATRRLLD-------------H 139

Query: 172 MFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +  +   H G+  E    LT RE E L  +++G T+ EIA  L ++  TV  +I  ++ K
Sbjct: 140 VAPTLPDHVGEPDERLDVLTDREREVLVEVAKGATNAEIATNLFMAEGTVKTHIGRLLAK 199

Query: 228 TATKTRSGAIAYAVRNNI 245
              + R G + +A    +
Sbjct: 200 LHCRDRVGLVLFAYETGL 217


>gi|152981499|ref|YP_001354599.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281576|gb|ABR89986.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 248

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 14/123 (11%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           A   + Y     D + +   +  +    R + +     +G L  +Q +          +D
Sbjct: 140 AAGADGYLLKLEDSSELLEAIPTVLDNRRYVSKL----LGPLTHFQDS----------ED 185

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T RE + L  ++ GK+S EIA  L +S  TV  +  ++M K +         YA+  
Sbjct: 186 QAVTPREQQILKLVAAGKSSQEIADTLELSVFTVRKHKQNLMAKLSLHNAVELTRYAMHQ 245

Query: 244 NIV 246
            ++
Sbjct: 246 GLL 248


>gi|77463659|ref|YP_353163.1| two component transcriptional regulator, LuxR [Rhodobacter
           sphaeroides 2.4.1]
 gi|221639502|ref|YP_002525764.1| LuxR family two component transcriptional regulator [Rhodobacter
           sphaeroides KD131]
 gi|332558515|ref|ZP_08412837.1| Two component transcriptional regulator, LuxR family protein
           [Rhodobacter sphaeroides WS8N]
 gi|77388077|gb|ABA79262.1| two component transcriptional regulator, LuxR [Rhodobacter
           sphaeroides 2.4.1]
 gi|221160283|gb|ACM01263.1| Two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides KD131]
 gi|332276227|gb|EGJ21542.1| Two component transcriptional regulator, LuxR family protein
           [Rhodobacter sphaeroides WS8N]
          Length = 210

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 19/195 (9%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALSEKDKYYNVLQRPT-ELFCPVFHT 115
           AS  + V+     ++ L+ I     PFD+ +  + +   +    +++        PV   
Sbjct: 29  ASSEMTVKTAKSLDEALERI-KEHGPFDVTLLDLNMPGMNGVAGLVRAIKLSAGKPVAIL 87

Query: 116 L----PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
                P  +            L     R     +     G   L   L           +
Sbjct: 88  TSNPTPRMVDEILATGASGIVLKTTPVRSLGNAIRFMHAGEHYLPLELAR---------D 138

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++ D   G+   LT +E+  +++++EG+ + EIA  L ++  T+  ++ SI +K    
Sbjct: 139 RRQAPDSSGGR---LTEKEMLVMSYLAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGAT 195

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    I+
Sbjct: 196 NRTQAVVTARNLGII 210


>gi|148262835|ref|YP_001229541.1| two component LuxR family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146396335|gb|ABQ24968.1| two component transcriptional regulator, LuxR family [Geobacter
           uraniireducens Rf4]
          Length = 217

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 10/168 (5%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRP--TELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D          +RP    +   ++                Y      
Sbjct: 50  PDVVLMDIQMPEMDGVRATAAITCERPDARVIILTMYRQDTYVFEAIKAGARGYLLKDGS 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +   G I+  D    +  L   +       +     D  LT  E++ L  
Sbjct: 110 GDDVVAAVRSVAQGGVILPPD----MASLVFEEFRRLAGDEQDGVPDERLTPGEMDVLLR 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I++G  + +IA  L ++  TV N ++ I  K   K R+ A   A+R  
Sbjct: 166 IAQGDDNRQIAAALNVTTKTVANRLSEIFSKLHVKNRTQAALTALRKG 213


>gi|315499426|ref|YP_004088229.1| transcriptional regulator, luxr family [Asticcacaulis excentricus
           CB 48]
 gi|315417438|gb|ADU14078.1| transcriptional regulator, LuxR family [Asticcacaulis excentricus
           CB 48]
          Length = 248

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 64/182 (35%), Gaps = 21/182 (11%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            ++D +V   W    VR    ++ +    + +R  +     F    E      G      
Sbjct: 79  ARIDPVVK--WAVGSVRPFRWADIEHEAELTRRQRQ-----FLREAEAGGLYNG-----I 126

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF------- 184
            + F   +   G + L    R      +  + +LAAY  + +  Y               
Sbjct: 127 GVPFPGPKTLRGGIALATSVRKARP--MENLDVLAAYCHHFYAVYKRLVPPGLRLSPAAA 184

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E E L  ++ G +++ IA  L I   +V+ ++ +I RK     R+ A    +   
Sbjct: 185 SLTRTEQEVLFRLAHGLSNEIIADRLSIKAGSVDFHVQNIFRKFGVNNRTAAAMKGLMGG 244

Query: 245 IV 246
            +
Sbjct: 245 YI 246


>gi|253800086|ref|YP_003033087.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           KZN 1435]
 gi|289555327|ref|ZP_06444537.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           KZN 605]
 gi|297633408|ref|ZP_06951188.1| transcriptional regulator, luxR-family protein [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730393|ref|ZP_06959511.1| transcriptional regulator, luxR-family protein [Mycobacterium
           tuberculosis KZN R506]
 gi|313657720|ref|ZP_07814600.1| transcriptional regulator, luxR-family protein [Mycobacterium
           tuberculosis KZN V2475]
 gi|253321589|gb|ACT26192.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           KZN 1435]
 gi|289439959|gb|EFD22452.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           KZN 605]
 gi|328459824|gb|AEB05247.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           KZN 4207]
          Length = 882

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E + +  +SEG ++ +IA  L +S  TV  ++  +  K    +R   +  A R  
Sbjct: 821 LTPTERDVVRLVSEGLSNKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879


>gi|221195335|ref|ZP_03568391.1| transcriptional regulator, LuxR family protein [Atopobium rimae
           ATCC 49626]
 gi|221185238|gb|EEE17629.1| transcriptional regulator, LuxR family protein [Atopobium rimae
           ATCC 49626]
          Length = 240

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 163 GLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            LL  +  +  +   V    D     +LT RE E  + +  G ++ +IA  L +S  T+ 
Sbjct: 144 HLLDIHLDSTPRLSAVEPASDQTISSQLTRRENEVASLVCCGMSNAQIASKLYVSEKTIK 203

Query: 219 NYIASIMRKTATKTRSGAI 237
            ++++I  K   + R   I
Sbjct: 204 THLSNIFSKLGVRNRVQLI 222


>gi|167758853|ref|ZP_02430980.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704]
 gi|167663593|gb|EDS07723.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704]
          Length = 207

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E++G+E+E ++ ++EG ++ EIA  L +S  TV NYI+SI+ K   + R+    Y
Sbjct: 147 EISGKELEVISLVAEGLSNKEIAKRLFLSEGTVRNYISSILDKLELRDRTQLAVY 201


>gi|186470703|ref|YP_001862021.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197012|gb|ACC74975.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 219

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 57/178 (32%), Gaps = 23/178 (12%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-----PVFHTLPENITPPAGMDNRY 130
            +V  D     +  +   E  + + V  R   L        V   L    +     D   
Sbjct: 52  DVVLIDLNMPDMNGIETLEMMRQHGVDARFLMLTVSDNERDVVAALRAGASGYLLKDMEP 111

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L  ++ +   G  +L                 +     +   +          L+ RE
Sbjct: 112 EELCLNLQKALQGTAVLSE--------------AVTGKLFHALSAGQPLPANQSNLSVRE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY----AVRNN 244
            E L ++ EG  + EIA  L IS  TV  ++  ++ K    +R  A+ +    A R N
Sbjct: 158 QEVLDYLVEGMCNKEIARKLDISVGTVKVHVKHLLHKLDLHSRVEAVVWHHEQAARRN 215


>gi|298246648|ref|ZP_06970453.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549307|gb|EFH83173.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 920

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++EG ++  IA  L +S  TV  ++ S+  K A   R+ A+A A   +
Sbjct: 859 PLTPREQEVLYLLAEGASNQVIAERLVVSLTTVKKHVGSLFLKLAADNRTHAVALARELS 918

Query: 245 IV 246
           ++
Sbjct: 919 LL 920


>gi|296330376|ref|ZP_06872857.1| two-component response regulator (YvfT) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676019|ref|YP_003867691.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152644|gb|EFG93512.1| two-component response regulator (YvfT) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414263|gb|ADM39382.1| two-component response regulator (paired with YvfT) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 200

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L   + GKT+ +I + L +S+ TV NYI+ I++K   K R+ A + A  
Sbjct: 137 ENPLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLDAKNRTEAASIAEE 196

Query: 243 NNIV 246
              +
Sbjct: 197 KGWI 200


>gi|259048250|ref|ZP_05738651.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035099|gb|EEW36354.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 216

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 8/162 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           +R    +  +    + +   E+   +  T  +       + N    Y         I  G
Sbjct: 58  IRMPESNGIEGTKLIKEAFPEVKVLIVTTFQDTEYIVEAVQNGASGYLLKDSSPDAILDG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++  D +    LL        +S+D    + + LT REVE +  +++G ++
Sbjct: 118 IKVALSGKVVM--DTVISEALLTNTSVEKEESFD---AEKWGLTTREVELIAQVAKGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV N I++I+ K   + R+  + +A  N +
Sbjct: 173 KEIAQTLFLSEGTVKNNISTILSKLELRDRTQLVIFAYENKL 214


>gi|83643206|ref|YP_431641.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631249|gb|ABC27216.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 207

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT R+ E L  ++EG ++ +I   L I+  T+  +IA+I R+     R+ A+  A  
Sbjct: 144 DICLTPRQHEVLGLLAEGMSNKQIGTKLSIAPGTIKAHIAAIFRELNAANRTQAVHRARE 203

Query: 243 NNIV 246
             ++
Sbjct: 204 LKLL 207


>gi|260185786|ref|ZP_05763260.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289446457|ref|ZP_06436201.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           CPHL_A]
 gi|289419415|gb|EFD16616.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           CPHL_A]
          Length = 882

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E + +  +SEG ++ +IA  L +S  TV  ++  +  K    +R   +  A R  
Sbjct: 821 LTPTERDVVRLVSEGLSNKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879


>gi|21218760|ref|NP_624539.1| LuxR family two-component response regulator [Streptomyces
           coelicolor A3(2)]
 gi|5777679|emb|CAB53428.1| putative luxR family two-component response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 233

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A +
Sbjct: 166 LTDREREILELIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQ 222


>gi|319893351|ref|YP_004150226.1| Two-component response regulator [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163047|gb|ADV06590.1| Two-component response regulator [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463599|gb|ADX75752.1| two-component response regulator NreC [Staphylococcus
           pseudintermedius ED99]
          Length = 216

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L    +     +     L   +  +  G   + PK    L            Y  + 
Sbjct: 91  FHVLRSGASGYILKNAPDEQLLLAIRTVYQGETYIDPKMTTSLVKEFVHSSNDGEYSNDP 150

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           FK           L+ RE+E L  I++G  + +IA  L +S  TV  +   IM K   K+
Sbjct: 151 FKV----------LSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTRIMDKLNLKS 200

Query: 233 RSGAIAYAVRNNIV 246
           +   + YA++  ++
Sbjct: 201 KPELVEYALKKKLL 214


>gi|313108775|ref|ZP_07794763.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310881265|gb|EFQ39859.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 740

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  I++G ++ EI   L IS +TV  +   I  K     R+ A+A A    
Sbjct: 678 PLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALG 737

Query: 245 IV 246
           ++
Sbjct: 738 LL 739


>gi|297161527|gb|ADI11239.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 7/228 (3%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
             + +   P R  L      +   +   +      E VG +        L  E + D +V
Sbjct: 1   MNAALPDTPLRIVLADDERMVRTALRAILSSEPDLEVVGEAGTGAEAIPLVHELRPD-VV 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             D     +  +  +E+     V + P  +    F              + +        
Sbjct: 60  LMDVRMPEIDGIRATERIL-ATVPEPPRVIVVTTFENDSYVYDALRAGASGFLLKRARAD 118

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   + L+     +     L+   + A   A               L+ RE E L  ++
Sbjct: 119 ELVQAVRLVARSDSL-----LFPAAVRALAAAYATGRDGQAQALRDRLSEREAEVLRLMT 173

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ EIA  L ++  TV  ++A+++ K   + R+ A+  A     V
Sbjct: 174 TGLSNAEIADRLTVAPATVKTHVATVLAKLGVRDRTQAVIAAYECGFV 221


>gi|254523232|ref|ZP_05135287.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219720823|gb|EED39348.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 216

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV-RCMA 91
             R+   D        + AL + +G    L        +  LD++++   P D+V   + 
Sbjct: 9   AIRVALADDQALVRAGLRALLQGLGVEVVLEAED---GQALLDALLT--QPVDVVLSDIR 63

Query: 92  LSEKDKYYNVLQRPT-----ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +   D    + Q         L         + +   +    +   L           + 
Sbjct: 64  MPGVDGIEALRQLRARGDATPLLLLTTFDESDLLLRASEAGAQGFLLKDAAPADLREAIE 123

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
               G  +L     E         +     D           REV  L  ++ G ++ EI
Sbjct: 124 RVAAGETLLMPVSTEPVRARYRFHDEAPPTDT-------FGEREVAILRLLAGGYSNKEI 176

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L ++  TV NY+++I+ K  T+ R+ A+  A+   I+
Sbjct: 177 ARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 216


>gi|156932979|ref|YP_001436895.1| transcriptional regulator NarP [Cronobacter sakazakii ATCC BAA-894]
 gi|156531233|gb|ABU76059.1| hypothetical protein ESA_00782 [Cronobacter sakazakii ATCC BAA-894]
          Length = 214

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 20/199 (10%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE-KDKYYNVLQRPTELFCPVFHTLPE 118
           H L+V       + L  ++ +D  F +       E        L     L       L  
Sbjct: 8   HVLIVDDHPLMRRGLRQLLETDARFRVTGEAGSGEEAIAQARALSPDVILLDLNMRGLSG 67

Query: 119 NITPP----AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN--- 171
             T       G++ R   LT   A+  I  M        +L+D   E  L A        
Sbjct: 68  LDTLTMLRRDGVNARIIVLTVSDAQSDIFAMTDAGADGYLLKDSEPEALLEAIRAGAAGA 127

Query: 172 ------------MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
                         K  +        LTGRE++ L  ++ G ++ +IA  L IS  TV  
Sbjct: 128 GAFSEQVQAYLLARKPDEQRDAPFALLTGRELDVLQEVARGLSNKQIASALQISEETVKV 187

Query: 220 YIASIMRKTATKTRSGAIA 238
           +I +++RK   ++R  A  
Sbjct: 188 HIRNLLRKLNVRSRVAATV 206


>gi|134099595|ref|YP_001105256.1| putative transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291009580|ref|ZP_06567553.1| putative transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133912218|emb|CAM02331.1| putative transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 285

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    L+ RE E L  ++ G T+D +A  LG+  NTV +Y+ S M+K     R  A+ 
Sbjct: 217 RHGTRPALSPRETEVLALVATGCTNDAVARRLGLLPNTVKSYLKSAMKKLDATNRVQAVN 276

Query: 239 YAVRNNIV 246
            A +  ++
Sbjct: 277 RARQAGLI 284


>gi|104781277|ref|YP_607775.1| response regulator [Pseudomonas entomophila L48]
 gi|95110264|emb|CAK14971.1| putative response regulator, LuxR family [Pseudomonas entomophila
           L48]
          Length = 130

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D    +   LT R+ E L  +  G  S E+A  LG+S  TVNN++  +MR      R+
Sbjct: 48  SDDRAPSEAVRLTRRQQEILQLLHRGLASKEVAAELGLSLGTVNNHVTGLMRVLGVTNRT 107

Query: 235 GAIAYAVRNNIV 246
            A++ A+    +
Sbjct: 108 HAVSRAMDLGYL 119


>gi|119715592|ref|YP_922557.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119536253|gb|ABL80870.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 217

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G+D  LT RE E L  I++G ++ EIA    +S N+V  YI +  RK     R+ A+A+
Sbjct: 140 PGRDVGLTAREAEVLALITQGLSNQEIAEHTYLSINSVKTYIRTAYRKIEVTRRAQAVAW 199

Query: 240 AVRNN 244
            + + 
Sbjct: 200 GMTHG 204


>gi|300088612|ref|YP_003759134.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528345|gb|ADJ26813.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 227

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S     G +  L  RE + L  I +G T+ EIA+ LG++  TV   I  ++ K     R+
Sbjct: 156 STGSSSGPEILLKSREKQVLDLIVKGLTNKEIAMKLGLAEVTVKKIIGHLLHKLNAANRT 215

Query: 235 GAIAYAVRNNI 245
            A   A +  +
Sbjct: 216 QAALAAKQLGL 226


>gi|271968550|ref|YP_003342746.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511725|gb|ACZ90003.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 201

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 10/183 (5%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           L V  D+   +++   V    P   V  + L + D +   L+       P    L  +  
Sbjct: 27  LKVVADVGSGEEVVPSVLRHGPETAVIDVDLPDVDGFTAALRLRENT--PGCRVLLLSRD 84

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
           P  G   R  ++        +G M L      +  D +  +        +   +      
Sbjct: 85  PNPGQVRRAFAVH------ALGFMSLDVGPEQL-ADGVRRVAA-GGRAVDSELAVAALEA 136

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  LT RE++ L   ++G  S+EIA  L +S  TV N+++ IM KT  + R  A+  A 
Sbjct: 137 AENPLTRRELDVLRLAAQGARSNEIADQLFLSVGTVRNHMSRIMCKTHARNRLDAVRIAS 196

Query: 242 RNN 244
            + 
Sbjct: 197 DSG 199


>gi|256396087|ref|YP_003117651.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362313|gb|ACU75810.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 213

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 13/157 (8%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLMLLFP 149
           L        ++   T     +  T   +      ++       L        +  +    
Sbjct: 64  LDGVAATTEIVAGKTGTRVLILTTYDTDAEIERAVEAGAIGYLLKDTTREQLVEAIRGAA 123

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +G  +L  R+      A   A M +   V       LT REV+ L  +++G ++ +I   
Sbjct: 124 RGETVLAPRIA-----AKLVARMRQPAPVV------LTTREVDVLNGVADGLSNADIGKR 172

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 173 LVIAEATVKTHLLRVFAKLDVSDRTHAVVTALERGLL 209


>gi|228911192|ref|ZP_04074997.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228848368|gb|EEM93217.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 189

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 34/65 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNN 244
           A    
Sbjct: 183 AEEKG 187


>gi|228942499|ref|ZP_04105035.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975433|ref|ZP_04135988.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982066|ref|ZP_04142358.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228777604|gb|EEM25879.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784227|gb|EEM32251.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817182|gb|EEM63271.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 189

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 35/65 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA +L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNN 244
           A    
Sbjct: 183 AEEKG 187


>gi|126462491|ref|YP_001043605.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104155|gb|ABN76833.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 240

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 19/195 (9%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALSEKDKYYNVLQRPT-ELFCPVFHT 115
           AS  + V+     ++ L+ I     PFD+ +  + +   +    +++        PV   
Sbjct: 59  ASSEMTVKTAKSLDEALERI-KEHGPFDVTLLDLNMPGMNGVAGLVRAIKLSAGKPVAIL 117

Query: 116 L----PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
                P  +            L     R     +     G   L   L           +
Sbjct: 118 TSNPTPRMVDEILATGASGIVLKTTPVRSLGNAIRFMHAGEHYLPLELAR---------D 168

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++ D   G+   LT +E+  +++++EG+ + EIA  L ++  T+  ++ SI +K    
Sbjct: 169 RRQAPDSSGGR---LTEKEMLVMSYLAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGAT 225

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    I+
Sbjct: 226 NRTQAVVTARNLGII 240


>gi|329726465|gb|EGG62928.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU144]
          Length = 218

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 6/175 (3%)

Query: 78  VSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYC 131
           V    P  L+  +++   +        + +   E    +       E +        +  
Sbjct: 42  VLEHQPDVLILDLSMPPGESGLIATSKISESFPETKILILTMFDDEEYLFHVLKSGAKGY 101

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
            L        I  +    +G   +  +L    +      +              L+ RE+
Sbjct: 102 ILKNSPDEQLILAVRTVYQGETYVDMKLTTSLVNEFVNQSQMDEVSSSSDPFKILSKREL 161

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I++G  + +IA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 162 EILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLL 216


>gi|326773003|ref|ZP_08232287.1| two-component system, regulatory protein [Actinomyces viscosus
           C505]
 gi|326637635|gb|EGE38537.1| two-component system, regulatory protein [Actinomyces viscosus
           C505]
          Length = 243

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 59/171 (34%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  + +      L     L   +F      +         +     
Sbjct: 70  DVVLMDIQMPGLTGIEATRRICADPTLAATRVLILTMFEIDDYVLGALRAGACGFLLKDA 129

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++    L  +        +   S     G+   LT R+ E L 
Sbjct: 130 DPQSLVDAVRTVHEGQSLLSPQVLARLVARMPSTTSTGTSRSTWAGEVEALTPRQREVLL 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EI V LGI+R T  ++I +++ +   + R+  +  A    ++
Sbjct: 190 LIARGLSNSEIEVELGITRATCRSHITALLARLGARDRAQLVIAAYEAGLI 240


>gi|288919627|ref|ZP_06413956.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349025|gb|EFC83273.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 218

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 3/145 (2%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             +  P  +       L E +        R   L      + +  +     G  ++   +
Sbjct: 73  RGVADPIAVVVITTFDLDEYVHGALRAGARGFLLKDAGPALLVQAVHAAAVGDALIAPNI 132

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               LLA   A    S          LT RE E L  ++ G+T+ EIA  L IS  T   
Sbjct: 133 TRR-LLATLAAGA--SSKRRTQPIEPLTQREEEVLKLVAVGRTNAEIAAELFISLTTAKT 189

Query: 220 YIASIMRKTATKTRSGAIAYAVRNN 244
           ++AS++ K   + R     +A    
Sbjct: 190 HVASLLAKIGARNRVEIAMWAYDTG 214


>gi|260459985|ref|ZP_05808238.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Mesorhizobium opportunistum WSM2075]
 gi|259034196|gb|EEW35454.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Mesorhizobium opportunistum WSM2075]
          Length = 871

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT RE E L  +SEG ++ +IA  L +S  TV  ++ +I  K +   R  A+  A
Sbjct: 802 QLTQRETELLRCLSEGMSNRDIAGALSVSETTVKWHLKNIFGKLSVSNRVQAVRAA 857


>gi|238898060|ref|YP_002923741.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465819|gb|ACQ67593.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 243

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 179 HWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           H  +D E  + RE E L W S GKT +EIA+ILGI   TV  ++ ++++K        AI
Sbjct: 166 HKREDKEMFSTRENEILYWSSVGKTYEEIAMILGIKLGTVKFHMGNVVKKLGVINGKHAI 225

Query: 238 AYAVRNNIV 246
              V   ++
Sbjct: 226 RLGVELKLI 234


>gi|163754001|ref|ZP_02161124.1| two component transcriptional regulator, LuxR family protein
           [Kordia algicida OT-1]
 gi|161326215|gb|EDP97541.1| two component transcriptional regulator, LuxR family protein
           [Kordia algicida OT-1]
          Length = 216

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLA 166
           +   VF              + Y     +   I   ++ +   G  +     L  + LL 
Sbjct: 81  IMLTVFDDEENIFRAIQAGADGYLLKEINAENIHKSILEVINDGAPMSPSIALKTLKLLR 140

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
               N     +    +  +LT RE + L  +S+G   +EIA  L IS  T+  ++ +I R
Sbjct: 141 ----NPLTITEDEAIEKVKLTKRETDVLLQLSKGLNYNEIAENLFISSGTIRKHVENIYR 196

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K     +  A+  A    ++
Sbjct: 197 KLQVHNKMEAVQKAKSQKLI 216


>gi|85860164|ref|YP_462366.1| two-component response regulator [Syntrophus aciditrophicus SB]
 gi|85723255|gb|ABC78198.1| two-component response regulator [Syntrophus aciditrophicus SB]
          Length = 215

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS +        LT RE E L  ++EG T+ EIA  L +S  TV  +  +I +K      
Sbjct: 141 KSPETTTENAPSLTAREREMLQLMAEGMTAKEIAAHLFVSVKTVETHRRNIAQKLNINRA 200

Query: 234 SGAIAYAVRNNIV 246
           +  I YA+R  +V
Sbjct: 201 AELIKYAIREGLV 213


>gi|84501462|ref|ZP_00999667.1| putative transcription regulator protein [Oceanicola batsensis
           HTCC2597]
 gi|84390753|gb|EAQ03241.1| putative transcription regulator protein [Oceanicola batsensis
           HTCC2597]
          Length = 232

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LTGRE++ L  +S GK +  IA  LG+S +TV  +I  ++ K   + R+GA  + ++N 
Sbjct: 163 LTGRELQVLELVSAGKQNKSIANDLGLSEHTVKLHIHHVLAKLNVRNRTGATTWFLQNR 221


>gi|296877165|ref|ZP_06901205.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|322390755|ref|ZP_08064267.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|296431685|gb|EFH17492.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|321142582|gb|EFX38048.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 228

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 68/170 (40%), Gaps = 6/170 (3%)

Query: 82  WPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTF 135
            P  ++  + +   D       V +   ++   +  T  ++    + +    + Y     
Sbjct: 48  HPDLILMDIRMPGMDGVLATKEVKEHYPDIKIIILTTFDDDEFIYSALKYGASGYLLKGA 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + +++  G +I  +   ++  + +  A    S  V      +L+  E   + 
Sbjct: 108 STEELYEAIKVVYQGGAMINPNIASKVFQIFSQMAKTNFSIAVDEDNVKDLSTTEWRIIQ 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  G+++ EIA  L +S  TV NY+++I+ K   + R+    ++V+  +
Sbjct: 168 EVGYGESNKEIAAKLFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQTGV 217


>gi|282853975|ref|ZP_06263312.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282583428|gb|EFB88808.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314923372|gb|EFS87203.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314966719|gb|EFT10818.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981049|gb|EFT25143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315093364|gb|EFT65340.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|327327545|gb|EGE69321.1| nitrate/nitrite response regulator protein NarL [Propionibacterium
           acnes HL103PA1]
          Length = 210

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G LA   A               LT RE + L   ++G ++ +IA  L +S  TV  +++
Sbjct: 128 GALAPAVATRLMVR--MRSPRTSLTAREFDVLEASAQGLSNAQIAEFLVVSEATVKTHLS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +RS A+A A     +
Sbjct: 186 HIYTKLGVTSRSAAVAKARDIGFI 209


>gi|223934862|ref|ZP_03626781.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896315|gb|EEF62757.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 213

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+EG+T+ +IA  LGIS  TV  +   +M K      +G   YA+   
Sbjct: 143 HLTSREAEVLQLIAEGQTNKQIAFELGISAKTVEKHRQQVMNKLKIHDVAGLTRYALSKG 202

Query: 245 IV 246
           I+
Sbjct: 203 II 204


>gi|159900998|ref|YP_001547245.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894037|gb|ABX07117.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 213

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L A  Q  + +           LT RE   L  I  G ++ EIA  L ++  TV  Y+++
Sbjct: 128 LHAEAQRTLMRQSTAPPSLLPSLTERERSVLDGIVGGLSNKEIARSLHLTEGTVKGYVST 187

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K A   R+ A  YA+++ 
Sbjct: 188 ILTKLAVADRTQAALYAIKHG 208


>gi|150398035|ref|YP_001328502.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150029550|gb|ABR61667.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 262

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 20/228 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMR-MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +  R+DL A  +       +  + +  L++   A   L           L  + ++ +P 
Sbjct: 26  MLARTDLFAECLAQAIGSRFQDQDVVRLSD---ADSLLDGNLVNVSLVMLYRVPATTFPS 82

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +        K     +++    L   V H + E +            L   +      +
Sbjct: 83  TIRMIHEFHPKAAVGLLVENAEGLDASVAHLVEEGMIH------GVLPLNLHLDVCLTAI 136

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK----------DFELTGREVECL 194
            LL   G       L  +      + +     +                  LT RE++ L
Sbjct: 137 DLLMKGGEHFPAALLRRLAPKNPGERDFSGPNETASENGNPERSKGLGQVVLTTREIQIL 196

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             I  G  +  IA  LG+S NTV  ++ +I +K   + R+ A +   R
Sbjct: 197 DLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFR 244


>gi|78484154|dbj|BAE47185.1| response-regulator protein [Streptomyces sp. AJ9463]
          Length = 216

 Score = 83.1 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 5/168 (2%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDV 137
           P  ++  + +   D        V  +  ++       L E +          +     + 
Sbjct: 49  PDLVLMDIQMPRLDGVSATGLVVAGQLADVLVLTTFDLDEYVFGALRAGAAGFLLKNAEA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     +I       +    A  A +  +          LT RE E L  +
Sbjct: 109 RELLDAVRTVARGEGLIAPAVTRRLIAEFAGTAPVRPAKAPDLSVLDVLTRREREVLGCL 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +G ++ EIAV L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 169 GDGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 216


>gi|313896828|ref|ZP_07830375.1| putative oxygen regulatory protein NreC [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312974275|gb|EFR39743.1| putative oxygen regulatory protein NreC [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 217

 Score = 83.1 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 58/171 (33%), Gaps = 12/171 (7%)

Query: 83  PFDLV-RCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPA-GMDNRYCSLTF 135
           P DLV   +++        +     +     +  P  H   E I          Y   T 
Sbjct: 47  PVDLVILDISMPGMGGLAAIRAIGAQYPAVKILVPSMHEDEEYIYKAMQSGAMGYLPKTS 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   L  L    R +  +   +  LLAA      +  D        LT RE E   
Sbjct: 107 ADDELFDALHALAEGRRYLSPNA--QQSLLAAM---FSRPGDAEEDPRARLTEREKEVFD 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G T  E A  L +S  TV+ +   I  K     RS  +A A+R+ ++
Sbjct: 162 RLIRGYTVTETAEQLHLSGKTVDTHKTHIYEKLGCSRRSDLVALAIRHGLL 212


>gi|284042088|ref|YP_003392428.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946309|gb|ADB49053.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 196

 Score = 83.1 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 11/183 (6%)

Query: 74  LDSIVSSDWPFDLVRC---------MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +D    + W F LV           +A         V + P ++   V     ++     
Sbjct: 14  VDREELALWGFSLVLQRQTWVRRCAVANDLATARKRVAELPVDVVA-VDGRFGDDALSAL 72

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-D 183
             D R  S    V           P    I R       L A   A +  +  +H     
Sbjct: 73  QADLRAISPCIRVVLTVDASDRTLPPLPTIDRTWPVARLLTALRAAGLDDTAPIHRPPSP 132

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE + LT +SEG T+ +I   L +S +T+  + +S+ RK   + R+ A+  A   
Sbjct: 133 TRLSERERQVLTLVSEGSTNAQIGRSLCLSPHTIKQHTSSVYRKLHARNRAEAVTRAREL 192

Query: 244 NIV 246
            ++
Sbjct: 193 GLL 195


>gi|226948658|ref|YP_002803749.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
 gi|226842846|gb|ACO85512.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 217

 Score = 83.1 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         I  G+        ++  D    I L   Y+  +    D      + L
Sbjct: 100 ASGYLLKDSSNELIYEGIKACVKGNIVVHPDVANNIILNTTYEKEL---NDDDISLKYNL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NNIV
Sbjct: 157 TEREINIIRQIANGLSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIV 216


>gi|291301112|ref|YP_003512390.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570332|gb|ADD43297.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 215

 Score = 83.1 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 5/161 (3%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L+  +  + +    +V   P  +       L E +        R   L  D     + 
Sbjct: 58  MPLMDGIEATRRLAGPDVTD-PLPIVVITTFDLDEYVHEALKAGARGFLLK-DAGPALLT 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
             +        L      + L+AA+             +   LT RE E L  +++G+T+
Sbjct: 116 QAIHAAADGNALIAPSVTVRLIAAFAQTHTSPPPQPIER---LTAREEEVLVSVAQGRTN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +EIA  L I+++TV  ++AS+MRK   + R     +A    
Sbjct: 173 NEIASELYITQSTVKAHLASLMRKLGARNRVEVAMWAHETG 213


>gi|288962256|ref|YP_003452551.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914522|dbj|BAI76007.1| two-component response regulator [Azospirillum sp. B510]
          Length = 240

 Score = 83.1 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 147 LFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             PK   +    + E+ L +   + +   + +        LT RE + L+ ++ G T+ E
Sbjct: 131 FVPKDVALDLMHMTEMSLDIDEAEESEAPALEGEGAPASPLTDREQQVLSMLATGATNKE 190

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   L +   TV  +   I+RK   + R+ A+  A +  ++
Sbjct: 191 IGRNLSLQEVTVKLHTRRILRKLGARNRTDAVRRAQQAGLL 231


>gi|288923247|ref|ZP_06417387.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288345421|gb|EFC79810.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 227

 Score = 83.1 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ++ G+++  IA  L +S  TV N++++I  K     R+ A   A    
Sbjct: 164 ELTAREREILDHLAAGRSNSTIARSLALSPRTVANHVSNIFAKLQVADRTEAAIRAREAG 223


>gi|257482088|ref|ZP_05636129.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011441|gb|EGH91497.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 209

 Score = 83.1 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D+  G    LT R+ E L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS 
Sbjct: 137 SDLDSGAISHLTVRQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRSA 196

Query: 236 AIA 238
           A A
Sbjct: 197 AAA 199


>gi|226362289|ref|YP_002780067.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240774|dbj|BAH51122.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 75

 Score = 83.1 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  ++ GK +  IA  LGIS +TV  ++AS+++K     R  A A  +R  I
Sbjct: 4   LNPRELEVLAHLTVGKRNKAIASELGISESTVKFHVASVLQKLDVTNRGEAGAIGIRAGI 63


>gi|302036456|ref|YP_003796778.1| hypothetical protein NIDE1093 [Candidatus Nitrospira defluvii]
 gi|300604520|emb|CBK40852.1| protein of unknown function, putative Response regulator, LuxR
           family [Candidatus Nitrospira defluvii]
          Length = 117

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 38/77 (49%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A + K   V   +   LT R+ E L  +S+G T+ +IA  L IS  TV  +  ++MR+  
Sbjct: 34  ARVVKPAPVRTKRSEGLTPRQKEILKLVSQGNTNRDIARRLDISVRTVEVHRFNLMRRLK 93

Query: 230 TKTRSGAIAYAVRNNIV 246
            +  +  +  A++   +
Sbjct: 94  VRNVAQLLRQALQQGFL 110


>gi|302868454|ref|YP_003837091.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302571313|gb|ADL47515.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 256

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V+  +D  L+ RE+E L   +EG ++ +IA  L ++  TV  ++ +I  K +  +R  
Sbjct: 159 DHVYGRRDEVLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSRID 218

Query: 236 AIAYAVRNNIV 246
           A+  AV  +I+
Sbjct: 219 AVNKAVAASII 229


>gi|297191286|ref|ZP_06908684.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718427|gb|EDY62335.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 16/173 (9%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFD 136
           P  +V  + +   D       + +R       V  T  ++      +      Y      
Sbjct: 49  PDVVVMDIRMPGTDGIEATRQITERHDGTHVIVLTTFDDDDCVYGALRAGAAGYLVKDMA 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVEC 193
           +  I   + ++     +I       +          F       G   EL   T RE E 
Sbjct: 109 LDDILAAVRVVAAGDGLISPAVTRRL-------IREFAGRPAGAGPKRELAGITDREREV 161

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LT +  G ++ EIA  L IS  T   Y+  ++ K   + R   +  A    +V
Sbjct: 162 LTLVGSGLSNSEIAEALFISVATAKTYVTRLLSKLGARDRVRLVIIAYETGLV 214


>gi|254391784|ref|ZP_05006980.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813562|ref|ZP_06772205.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|197705467|gb|EDY51279.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326161|gb|EFG07804.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 4/136 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D     LT  V     G  L+ P   + L   L  +      +  
Sbjct: 94  VYRALRNGACGFLLKDGSPTLLTEAVRAAAAGGSLISPTITVRL---LRHMASPEPDRNG 150

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +      +  E LT RE++ +  ++ G+T++E+A  L ++ +TV  ++ ++ RK + 
Sbjct: 151 RPAAEHRAPARLSEPLTERELDVIRRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSA 210

Query: 231 KTRSGAIAYAVRNNIV 246
           + R    A+A  N +V
Sbjct: 211 RNRVEIAAWAWENGLV 226


>gi|218231458|ref|YP_002370129.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218159415|gb|ACK59407.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|169825087|ref|YP_001692698.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|167831892|dbj|BAG08808.1| two-component response regulator [Finegoldia magna ATCC 29328]
          Length = 208

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
               +   K  ELT RE+E L  ++ G  +D+IA  LGIS NTV  +I  ++ KT   +R
Sbjct: 132 PEVKLGMAKSTELTPREIEVLRLLTTGAGNDQIAEELGISLNTVKTHIKHMLDKTEFTSR 191

Query: 234 SGAIAYAVRNNIV 246
           +     A     V
Sbjct: 192 TQLAIQARITGFV 204


>gi|170736721|ref|YP_001777981.1| ATP-dependent transcription regulator LuxR [Burkholderia
           cenocepacia MC0-3]
 gi|169818909|gb|ACA93491.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia cenocepacia MC0-3]
          Length = 921

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L ++      Q     +     G    L+ RE+E L +++ G ++ EIA  L ++  T+ 
Sbjct: 827 LRDLARAFDAQRASGGAPATRPGATGNLSARELEILDYVARGLSNKEIARALRVAPETIK 886

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ +I  K    +R  A+    R+ +
Sbjct: 887 WHLKNIFEKLNVTSRIQAV----RSGL 909


>gi|15894734|ref|NP_348083.1| two-component system regulatory protein [Clostridium acetobutylicum
           ATCC 824]
 gi|15024399|gb|AAK79423.1|AE007657_3 Two-component system regulator (CheY domain and HTH-like
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325508872|gb|ADZ20508.1| Two-component system regulator (CheY domain and HTH-like
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 225

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 7/176 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V    P  ++  + + E D       + +    +   V  T  ++      +    + Y 
Sbjct: 43  VRKYKPDVILMDVRMPEMDGVQCTKVIKESYPNIKIIVLTTFDDDEYIFNALKYGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGRE 190
                +  +   +  +   G +I  D   ++  L +  A    S      K+ + +   E
Sbjct: 103 LKGVSMDELVRAIHTVVNGGAMINPDITAKVFKLFSQMAQGDISIQAGTKKNTDDICDAE 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +  +  G ++ EIA  L +S  TV NY+++I+ K   + R+    +AV+  ++
Sbjct: 163 WNIIKCVGFGLSNKEIAKKLRLSEGTVRNYLSNILNKLNFRDRTQLAIWAVQTGVI 218


>gi|294633266|ref|ZP_06711825.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
 gi|292831047|gb|EFF89397.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
          Length = 230

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 10/171 (5%)

Query: 78  VSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITP---PAGMDNRYC 131
           V +  P   V  + L + D       +  R  EL C +  +  +            + Y 
Sbjct: 54  VPALRPDVAVLDVRLPDGDGVTVCRELRSRLPELACLMLTSFDDEEALLDSIMAGASGYV 113

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 + +   +  +     ++      ++           +  D   G    LT RE 
Sbjct: 114 LKQIQGSDLVSAVRTVARGQSLLDPSATTKLMARLRGGQQQEEQPDALPG----LTERER 169

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A +
Sbjct: 170 EILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQ 220


>gi|291003093|ref|ZP_06561066.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 233

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 81/214 (37%), Gaps = 13/214 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++  D  V     +  L E  G    + V  +    ++L + V    P  ++  + +  
Sbjct: 17  RLVLADDEVMLRRGLRVLLEQGG---RIRVVAEAGNGEELLAAVRGHRPDVVLVDVQMPS 73

Query: 95  KDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
           KD    +         P+      F              N +     D A +   ++ L 
Sbjct: 74  KDGLSALRDLRAMAAPPIAAVLTTFDLDDYVAEALRLGANGFLLKDADPAVLVRAVIDLA 133

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G ++         LL  ++     + +V   +   L+ RE + L  +++G+++ +I  
Sbjct: 134 AGGAVLDPRITAR--LLPRFRNLGDSADEVRLVR--TLSARERQVLFLLADGRSNADIGD 189

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LG++  TV +Y+++++ K   + R  A   A R
Sbjct: 190 RLGLTEATVKSYVSTVLGKLGAENRVQAALIAQR 223


>gi|55821328|ref|YP_139770.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55823240|ref|YP_141681.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55737313|gb|AAV60955.1| response regulator (homolog to RR11 Spn) [Streptococcus
           thermophilus LMG 18311]
 gi|55739225|gb|AAV62866.1| response regulator (homolog to RR11 Spn) [Streptococcus
           thermophilus CNRZ1066]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +     +  L+ RE E L  +++G T+ EIA  L +S  TV NY+ +
Sbjct: 117 VLAGQKEYSPELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTA 176

Query: 224 IMRKTATKTRSGAIAYA 240
           I+ K     R+ A+  A
Sbjct: 177 ILTKLDAGNRTDAVRIA 193


>gi|15608030|ref|NP_215405.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           H37Rv]
 gi|6137301|sp|Q10550|Y890_MYCTU RecName: Full=Putative HTH-type transcriptional regulator
           Rv0890c/MT0914
 gi|3261566|emb|CAA97404.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY)
           [Mycobacterium tuberculosis H37Rv]
          Length = 882

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E + +  +SEG ++ +IA  L +S  TV  ++  +  K    +R   +  A R  
Sbjct: 821 LTPTERDVVRLVSEGLSNKDIAKRLFVSPRTVQTHLTHVYAKLGLPSRVQLVDEAARRG 879


>gi|314968011|gb|EFT12110.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           HL037PA1]
          Length = 77

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 36/69 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +   K  +LT RE+E    ++ G ++ EIA  L +S  TV  ++++ + K   + R   +
Sbjct: 1   MTGSKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLV 60

Query: 238 AYAVRNNIV 246
           A A  + ++
Sbjct: 61  ALAYESGLI 69


>gi|291302327|ref|YP_003513605.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571547|gb|ADD44512.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 222

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 144 LMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           +    P   ++   R          AA  A   K      G   +L+ RE + L  +++G
Sbjct: 111 VPKSAPSDDVVSAARHAATTPNAFTAADLAEAMKRRLTPSGP--QLSPRESQVLKLLADG 168

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +   IA  L +S +T   +I+ +  K     R+ A+  A++  ++
Sbjct: 169 MSVAGIAKQLYVSESTAKTHISKLYEKLGAGNRAQALMTALKLGLL 214


>gi|184201279|ref|YP_001855486.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581509|dbj|BAG29980.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 207

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G ++  +A  L IS  TV  ++  I  K     R+ A++ A   ++
Sbjct: 147 LSPREIEILRGLATGASNRALAKSLFISEATVKTHLVHIYDKLGVDNRTAAVSRAREEHV 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|163839801|ref|YP_001624206.1| LuxR family two-component response regulator [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953277|gb|ABY22792.1| two-component response regulator, LuxR family [Renibacterium
           salmoninarum ATCC 33209]
          Length = 67

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    I++G ++ EIA  L +S  TV  ++  I+ K   + R   +  A    
Sbjct: 4   LTAREHELFLLIAQGYSNPEIASNLFLSEATVKTHVGHILSKLGARDRVQIVVIAYETG 62


>gi|149911017|ref|ZP_01899646.1| regulatory protein CsgD [Moritella sp. PE36]
 gi|149805920|gb|EDM65906.1| regulatory protein CsgD [Moritella sp. PE36]
          Length = 230

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +  ELT RE E L  +  G ++ EIA  L +S +T+ +++ ++ +K   K R  A+
Sbjct: 163 VDLDRKPELTTREQEILRQLMTGSSNLEIADALYVSEHTIKSHLYNVFKKIKVKNRLQAV 222

Query: 238 AYAVRNNIV 246
           ++A + +++
Sbjct: 223 SWA-KESLI 230


>gi|107027364|ref|YP_624875.1| ATP-dependent transcription regulator LuxR [Burkholderia
           cenocepacia AU 1054]
 gi|116693926|ref|YP_839459.1| ATP-dependent transcription regulator LuxR [Burkholderia
           cenocepacia HI2424]
 gi|105896738|gb|ABF79902.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia cenocepacia AU 1054]
 gi|116651926|gb|ABK12566.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia cenocepacia HI2424]
          Length = 921

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L ++      Q     +     G    L+ RE+E L +++ G ++ EIA  L ++  T+ 
Sbjct: 827 LRDLARAFDAQRASGGAPATRPGATGNLSARELEILDYVARGLSNKEIARALRVAPETIK 886

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ +I  K    +R  A+    R+ +
Sbjct: 887 WHLKNIFEKLNVTSRIQAV----RSGL 909


>gi|94311025|ref|YP_584235.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93354877|gb|ABF08966.1| transcriptional regulator, luxR family [Cupriavidus metallidurans
           CH34]
          Length = 217

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 11/220 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D    +   + AL +    S F +V       + +        P  ++  + 
Sbjct: 1   MTIRILLIDDHTLFRSGVRALLQR--QSDFEVVDEAADGVEGIKR-AKQHRPDVILLDLN 57

Query: 92  LSEKDKYYNV------LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +        +      L     +   V     E  +        Y     +   +   + 
Sbjct: 58  MPGLSGLEALQLLTEDLPECAVIVLTVSEEGEELASALRSGARGYLIKNIETEALTSAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                  +I         L+  ++A       +  G    LT RE + +  +  G+++  
Sbjct: 118 RAAAGEPVISDT--MTAKLVQQFKAPAAAPALLERGDAAPLTARERDIVRGLVRGESNKM 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  LG++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 176 IARALGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 215


>gi|329940271|ref|ZP_08289553.1| respose regulatory protein [Streptomyces griseoaurantiacus M045]
 gi|329301097|gb|EGG44993.1| respose regulatory protein [Streptomyces griseoaurantiacus M045]
          Length = 211

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE E L  +S G  + EIA  L IS  TV  ++  I  K   +TR+GA+A 
Sbjct: 144 RDPRPALSARESEILQQLSGGLGNREIARALFISEATVKTHLQRIYGKLGVETRAGAVAV 203

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 204 AKERRLL 210


>gi|327438509|dbj|BAK14874.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 204

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  LT RE + L  ++EGKT+ EIA  L +S  TV NYI+ I+ K     R  AIA 
Sbjct: 137 ENPLTERESQVLELVAEGKTTKEIAAELYLSAGTVRNYISVILDKLGVGNRIEAIAR 193


>gi|289644902|ref|ZP_06476947.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289505287|gb|EFD26341.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 222

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       +   L+ RE E L  I+EG T+ +IA  + +S  TV NY+++I+ K    
Sbjct: 138 RLREGPAEDSRLATLSEREREILLLIAEGLTNRQIASRIHLSDKTVKNYVSAILDKLELT 197

Query: 232 TRSGAIAYAVR 242
           +R+ A  YA +
Sbjct: 198 SRTQAAVYATK 208


>gi|288917777|ref|ZP_06412139.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288350833|gb|EFC85048.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 308

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 8/169 (4%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF------DV 137
            D+V   A +  ++    ++   +   PV   + E              +          
Sbjct: 142 ADVVLVSAENADERTLRTVRELQQGGVPVVLVVAELEAHDLTAAVEAGVVGLLRRATATP 201

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +         +  D L    LL   Q    +           L+ RE+  L  +
Sbjct: 202 EAVLAAVRGAAVGEGYLPPDMLG--SLLRQVQQVSTQVLAPRGLTFSGLSERELTVLRLV 259

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG  + EI   L  S  TV N +  + R+   + RS A+A+A+R  ++
Sbjct: 260 AEGHDTQEIGRRLNYSERTVKNVLQDVTRRFGLRNRSHAVAFALRQGLL 308


>gi|290962712|ref|YP_003493894.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260652238|emb|CBG75371.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 216

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILR--------DRLWEIGLLAAYQANMFKSYDVHWG--K 182
           LT  +     G +L      +++         D L   G+       + +      G   
Sbjct: 89  LTIALRNGACGFLLKDAAPALLIEAVRSAARGDALVSPGVTVRLLRLLEERTSAAAGGVP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE+E    ++ G+T+ EI+  L +S +TV  ++  I  K   + R    A+A  
Sbjct: 149 GSALSARELEVARLVAVGRTNQEISDELCLSLSTVKTHLGHIHHKLGVRNRVEVAAWAWA 208

Query: 243 NNIV 246
           N  V
Sbjct: 209 NGTV 212


>gi|126740186|ref|ZP_01755875.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
 gi|126718641|gb|EBA15354.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
          Length = 215

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 17/192 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF-----CPVF--- 113
           +L   +      +  I   D  F LV   A +E      V++ P ++       PV    
Sbjct: 12  MLADSNPLVLSAMSEIFERDPRFSLVATSATAEGFLGI-VMRVPVQVGIIDWNLPVLGAA 70

Query: 114 ---HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
                L E+   P  +   Y     D  R+ +         R    + L E  L  A   
Sbjct: 71  KLIEVLREHENAPRLV--VYGDADGDAPRLAMQAGAAGFAPRSGEAEGLLETCLDVAAGK 128

Query: 171 NMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +F   DV   +      L+ +E   L  +++G ++ E++  L IS NTV  ++++I  K
Sbjct: 129 MVFPFIDVRKMQQDPIHSLSRKERAILESLAKGMSNRELSKALQISTNTVKFHLSNIYEK 188

Query: 228 TATKTRSGAIAY 239
            + K R+ AIAY
Sbjct: 189 LSVKNRAQAIAY 200


>gi|167032675|ref|YP_001667906.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166859163|gb|ABY97570.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 219

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 4/140 (2%)

Query: 108 LFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +     HT P+ I        + Y         +   L  +    R +          + 
Sbjct: 79  VLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALSAVRNGERYLSP---AIAHTVI 135

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                  K      G+   LT R++E L  I  GK++ EIA  LG+S  T+  + + IM+
Sbjct: 136 NQALRHTKQGKQSAGERHNLTARQLEILRLIVRGKSTREIATGLGLSIKTIETHRSQIMK 195

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +      +G + +AVR  I+
Sbjct: 196 RLQIHDVAGLVLFAVREKII 215


>gi|119468997|ref|ZP_01612022.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonadales bacterium TW-7]
 gi|119447649|gb|EAW28916.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonadales bacterium TW-7]
          Length = 217

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           IL    W    L    A +         +   LT ++   L ++ EG  + +IA  L IS
Sbjct: 119 ILEGDTWLPKELKNKVAEIEGEDREIAAQVASLTPQQYRVLQYLHEGLLNKQIAYELHIS 178

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             TV  +I +I RK     R+ A+  A +  +
Sbjct: 179 EATVKAHITAIFRKLGVYNRTQAVLIAAKLQL 210


>gi|114799510|ref|YP_759982.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739684|gb|ABI77809.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC
           15444]
          Length = 213

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   L          D    +L   + +I  G+  L P               +A    +
Sbjct: 90  IVGALSAGANGYLLKDQPQDTLIRQLRQIADGVPALSPS--------------IARRIMD 135

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F+        D +LT RE + L  I  G  + E+A  L +S NTV +YI  I RK    
Sbjct: 136 HFRLTGPA-APDDDLTARERDVLALIGRGMRNGEVARALDLSENTVASYIKGIYRKLGIS 194

Query: 232 TRSGAIAYAVRNNI 245
           +R+ A  +A R  +
Sbjct: 195 SRAEASWHATRMGL 208


>gi|15614686|ref|NP_242989.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174742|dbj|BAB05842.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 223

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 17/169 (10%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +V   +P   V  +   E D Y             +  +L          D  Y  L + 
Sbjct: 70  VVKRIYPHINVLMLTTFEDDDY-------------IIESLVGGANGFLLKDLNYDQLIYS 116

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           + +   G ML+     + L  +L +   L      + K       +    + RE +  + 
Sbjct: 117 IRQSVDGQMLIPNSIAVKLAKQLSKYNELTEVDLQIEKLK----KEGLHFSERERQIASL 172

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +++G T+ +IA  L I+  TV NYI+ I  K   + R  A  Y     I
Sbjct: 173 LAQGLTNKKIAEKLYITEGTVKNYISEIYSKIGIRDRMQASTYLRELGI 221


>gi|333029774|ref|ZP_08457835.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM
           18011]
 gi|332740371|gb|EGJ70853.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM
           18011]
          Length = 206

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           + ++   A    +      ++  +  EL+ RE++ ++ I+ GKT+ EIA  L IS+ TV 
Sbjct: 114 IMDLHRNAHEPNHSKNMEAINAHQVHELSPREIDVISLIAVGKTNKEIAKKLSISQTTVI 173

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +I  K   K+ SG   YAV N  +
Sbjct: 174 THRKNITDKLGIKSVSGLTIYAVINGYI 201


>gi|281425332|ref|ZP_06256245.1| hypothetical protein HMPREF0971_02305 [Prevotella oris F0302]
 gi|281400625|gb|EFB31456.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris F0302]
          Length = 318

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 12/221 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDL 86
           R +L+  +   D    + +++Y    +    H  +       + EQ L+ +V S+     
Sbjct: 100 RRELVEALDERDSLAQFILKLYDENAHEIMKHMRYEEKTVFPYVEQLLNGVVMSN----- 154

Query: 87  VRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                ++   +++  ++ R  EL   +   LP +      +      + ++         
Sbjct: 155 ---YDINTFSQHHRQVEQRLQELKSIIIKYLPSDTLHNNLLTATLYDI-YNSESWLNQHS 210

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++  +  I    RL +         N+ K  +     D +L+ RE + +  + +G ++ E
Sbjct: 211 MVEDQIFIPAIKRLEKSLSQQGVTLNISKMINPSTTGDDQLSEREKDIIIGVVQGMSNKE 270

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS NTV  +  +I RK    + +G   YA+ N++V
Sbjct: 271 IAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIVNHLV 311


>gi|326442029|ref|ZP_08216763.1| LuxR family two component transcriptional regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 229

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 4/136 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D     LT  V     G  L+ P   + L   L  +      +  
Sbjct: 97  VYRALRNGACGFLLKDGSPTLLTEAVRAAAAGGSLISPTITVRL---LRHMASPEPDRNG 153

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +      +  E LT RE++ +  ++ G+T++E+A  L ++ +TV  ++ ++ RK + 
Sbjct: 154 RPAAEHRAPARLSEPLTERELDVIRRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSA 213

Query: 231 KTRSGAIAYAVRNNIV 246
           + R    A+A  N +V
Sbjct: 214 RNRVEIAAWAWENGLV 229


>gi|134101735|ref|YP_001107396.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914358|emb|CAM04471.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 230

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 81/214 (37%), Gaps = 13/214 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++  D  V     +  L E  G    + V  +    ++L + V    P  ++  + +  
Sbjct: 14  RLVLADDEVMLRRGLRVLLEQGG---RIRVVAEAGNGEELLAAVRGHRPDVVLVDVQMPS 70

Query: 95  KDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
           KD    +         P+      F              N +     D A +   ++ L 
Sbjct: 71  KDGLSALRDLRAMAAPPIAAVLTTFDLDDYVAEALRLGANGFLLKDADPAVLVRAVIDLA 130

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G ++         LL  ++     + +V   +   L+ RE + L  +++G+++ +I  
Sbjct: 131 AGGAVLDPRITAR--LLPRFRNLGDSADEVRLVR--TLSARERQVLFLLADGRSNADIGD 186

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LG++  TV +Y+++++ K   + R  A   A R
Sbjct: 187 RLGLTEATVKSYVSTVLGKLGAENRVQAALIAQR 220


>gi|299141524|ref|ZP_07034660.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
 gi|298576860|gb|EFI48730.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
          Length = 318

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 12/221 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDL 86
           R +L+  +   D    + +++Y    +    H  +       + EQ L+ +V S+     
Sbjct: 100 RRELVEALDERDSLAQFILKLYDENAHEIMKHMRYEEKTVFPYVEQLLNGVVMSN----- 154

Query: 87  VRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                ++   +++  ++ R  EL   +   LP +      +      + ++         
Sbjct: 155 ---YDINTFSQHHRQVEQRLQELKSIIIKYLPSDTLHNNLLTATLYDI-YNSESWLNQHS 210

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++  +  I    RL +         N+ K  +     D +L+ RE + +  + +G ++ E
Sbjct: 211 MVEDQIFIPAIKRLEKSLSQQGVTLNISKMINPSTTGDDQLSEREKDIIIGVVQGMSNKE 270

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS NTV  +  +I RK    + +G   YA+ N++V
Sbjct: 271 IAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIVNHLV 311


>gi|256376358|ref|YP_003100018.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920661|gb|ACU36172.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 302

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++EG ++ EI   L +SR T+  ++  ++ K   + R+  +  A  + +V
Sbjct: 222 TAREREVLRLVAEGLSNTEITEALHVSRGTLKTHVGRLLHKLGARDRAQLVIAAYESGLV 281


>gi|329847838|ref|ZP_08262866.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842901|gb|EGF92470.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
          Length = 175

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 8/156 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-DNRYCSLTFDVARIRIGLMLL 147
            M   E  +    L    ++     H +P  +        + Y      +  ++  ++ +
Sbjct: 19  GMDGLEACRRIAALGVDAKVLMLTLHDMPAYVREALAAGASGYVLKDTAIDDLKAAIVRV 78

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                 I  D       L           D        LT RE + L  ++EG T+ E+ 
Sbjct: 79  AEGHTAIPLD-------LVTAALRQPAMQDRQLDLIATLTARERQILHCVAEGMTNKEVG 131

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L IS  TV  ++  I+ K     R+ A   A R+
Sbjct: 132 RHLDISPATVKAHVERIIAKLGVTDRTQAAVAAARH 167


>gi|330464915|ref|YP_004402658.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328807886|gb|AEB42058.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 221

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 4/170 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +A +   +    L     L    F    + I   +     Y     
Sbjct: 49  DVVLMDIRMPVLDGLAATAAIRADAGLAATRVLILTTFDDDEDIIEAVSLGAAGYLLKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +R  ++     G ++       + +     A      D        LT RE   L 
Sbjct: 109 PSDELRRAVLTTAAGGNLLSPTVTRRV-MERLAAAPRPARPDPRLAV---LTERERAVLA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  G+T+DEI   L IS  T   Y++ ++ K   + R+     A R  +
Sbjct: 165 RVGLGETNDEIGRALFISPATARTYVSRLLAKLNARDRTALAVIAHRAGL 214


>gi|325926758|ref|ZP_08188066.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542839|gb|EGD14294.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 210

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 12/216 (5%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ---EQKLDSIVSSDWPFDLVRCM 90
            R+   D  +     + AL +  G    ++   D  Q   +      V        +  +
Sbjct: 4   RRIALADDQILVRAGLRALLQQQGVE--VVCEADDGQGVLDALAIHTVDVVLSDIRMPGL 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
              +  +        T +         + +   +    +   L           +     
Sbjct: 62  DGIQALEQLRARGDRTPVLLLTTFDDSDLLLRASEAGAQGFLLKDAAPEDLREAIERVAA 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  +L+        ++         +            REV  L  ++ G ++ EIA  L
Sbjct: 122 GDTLLQP-------VSTDPVRARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIARTL 174

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 175 FLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210


>gi|262200121|ref|YP_003271329.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262083468|gb|ACY19436.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 267

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 12/153 (7%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                   +  R  E          E  +  AG+D    +  +   R     + +     
Sbjct: 125 GRTLDVLAMEARAVEQEIVAARVRLEARSESAGVDGDRLAQAYARLR-----LFVAHSDD 179

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
             L   L    L A + +    S D+       LTGRE + L   + G ++  IA  LGI
Sbjct: 180 AGLAAELDR--LTAEFTSEATSSVDLPA-----LTGREHDVLALAALGHSNARIADQLGI 232

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +T   Y+ S MRK    TR  A+  A R  +
Sbjct: 233 TVHTTKGYLKSAMRKLGATTRLEAVITARRAGL 265


>gi|251789457|ref|YP_003004178.1| transcriptional regulator NarL [Dickeya zeae Ech1591]
 gi|247538078|gb|ACT06699.1| two component transcriptional regulator, LuxR family [Dickeya zeae
           Ech1591]
          Length = 215

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 9/161 (5%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFH---TLPENITPPAGMDNRYCSLTFDVARIRIGL 144
               ++  +    + +        VF       + I+   G  + Y     +   + + L
Sbjct: 60  NMPGMNGLETLARLRETSLSGRIVVFTVSNHEEDVISAFKGGADGYLLKDMEPEDLLVAL 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                 G+++L D L  +       A++ ++         +LT RE + L  I++G  + 
Sbjct: 120 HQ-AAAGKMVLSDTLTPV-----LAASLRETRSSDTRDIQQLTPREKDILKLIAQGLPNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  L I+ +TV  ++  +++K   ++R  A  + V+  I
Sbjct: 174 VIARKLTITESTVKVHVKHLLKKMKLRSRVEAAVWVVQEKI 214


>gi|118443997|ref|YP_877397.1| response regulator [Clostridium novyi NT]
 gi|118134453|gb|ABK61497.1| Response regulator (CheY-like recever domain and HTH) [Clostridium
           novyi NT]
          Length = 209

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 11/160 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           +R   L        + ++  ++   +  T  ++      + N    Y     +   I   
Sbjct: 57  IRMPILDGVLATKKIKEQQKDIKIIILTTFKDDEYIAEAIKNGAEGYILKNQNSDSIIEC 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  ++    +  RD L  +                       LT RE+E L  I +G ++
Sbjct: 117 LRTVYNGNGVFQRDILNSLM--------CMIKNKKKSSNKINLTERELEILALIGQGLSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EI+  + +S  T+ NYI ++++K   + R+    Y ++N
Sbjct: 169 KEISKKVYLSEGTIRNYITNLLQKLQLRDRTQLAIYYLKN 208


>gi|15966568|ref|NP_386921.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307300395|ref|ZP_07580175.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318260|ref|ZP_07597695.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15075839|emb|CAC47394.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
 gi|306895942|gb|EFN26693.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904561|gb|EFN35145.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 260

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 13/195 (6%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE--KDKYYNVLQRPTELFCP 111
           +Y     +   R D  Q+  L +     W +D      +     D    V +  +E    
Sbjct: 69  DYWFDRGYF--RIDPVQQVALRTSTPFFWNYDPDADTLIRRFMSDDTAPVARYLSERDMS 126

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
              T+P  +  P G       + F   R   G  L +     +L     E    AAY   
Sbjct: 127 TGVTVP--VHMPRGDYATVTGVRFGGNRAFEGHALRYIADFNLLAHVFHE----AAYSLF 180

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++++    +   LT RE ECL + +EG ++ EI+ I+  S  TV  ++ +  +K   K
Sbjct: 181 DAQAFNAGTAR---LTERERECLRYSAEGHSAKEISRIIHRSVPTVVMHLNAAAKKLGAK 237

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    ++
Sbjct: 238 NRTQAVVRATHYRLL 252


>gi|85708084|ref|ZP_01039150.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           NAP1]
 gi|85689618|gb|EAQ29621.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           NAP1]
          Length = 141

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  +++G ++ EIA  LG+S NTV  +IA++  K     R  A+  A   
Sbjct: 78  LGLTRRECEILDHLAKGASNKEIARSLGVSPNTVKTHIANLYMKLEVTGRGKAVEAARSL 137

Query: 244 NIV 246
            ++
Sbjct: 138 ALI 140


>gi|326801202|ref|YP_004319021.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551966|gb|ADZ80351.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 216

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 39/82 (47%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L      +  S       D ++  RE+E L   ++G T+ EIA  L  S+ TV  Y  S+
Sbjct: 134 LLRQAMKVVPSSASANATDLQINNREMEVLALTADGFTNQEIAERLFTSKRTVEGYRQSL 193

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + KT  +  +  I YA +N I+
Sbjct: 194 IEKTGVRNTAALIKYAYQNGIL 215


>gi|300785449|ref|YP_003765740.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794963|gb|ADJ45338.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 234

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 52/169 (30%), Gaps = 17/169 (10%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            M   E  +          L    F           G    +       A +   + ++ 
Sbjct: 60  DMDGLEATRLITASTDVRVLILTTFDLDDYVYQALRGGAGGFLLKDTPPADLLAAIRVIA 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---------------FELTGREVEC 193
               ++         L+A + A    +     G                   +T RE + 
Sbjct: 120 SGDALLAPSITRR--LIAEFAARPEPARPGTAGAPGPGFAETGAAGPDPLASITDRERQV 177

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L  ++EG T+ EIA  L I+  T   ++ +++ K   + R   + +A R
Sbjct: 178 LALVAEGLTNAEIARRLHIAPGTAKTHVGNLLTKLNARDRVHLVIHAYR 226


>gi|298247654|ref|ZP_06971459.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550313|gb|EFH84179.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 907

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           I LL A+     ++       D  L+ RE+E L  I  G+++  IA  L +S NTV  ++
Sbjct: 816 IQLLRAFSEAASRTSHTQPLLD-PLSERELEVLQCIMRGQSNQTIADHLQVSLNTVKTHM 874

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           + I  K    +R+ A+A A    ++
Sbjct: 875 SHIFAKLHVNSRTQAVARANELQLI 899


>gi|209964709|ref|YP_002297624.1| nitrate/nitrite response regulator protein NarL [Rhodospirillum
           centenum SW]
 gi|209958175|gb|ACI98811.1| nitrate/nitrite response regulator protein NarL [Rhodospirillum
           centenum SW]
          Length = 228

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  +  G ++  IA  L I+  TV  ++ S++RK     R+ A  +A+ N I
Sbjct: 154 LSQREIQILRCLLNGDSNKMIANHLNITEATVKVHLKSLLRKINASNRTQAAIWALNNGI 213


>gi|172039771|ref|YP_001799485.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171851075|emb|CAQ04051.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 248

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 63/181 (34%), Gaps = 12/181 (6%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L  + +   +  SD P D++  +    +         P          L   I+     
Sbjct: 76  TLDTDARFLVLSVSDSPEDVITLIRAGARGYVTKNTSGPE---------LVSFISRVHSG 126

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
           D  +              +   P+ +   +D   + G +    A   +S     G     
Sbjct: 127 DAVFSPRLAGYVLDAFSSVAPSPEVQAPSQDLGRQRGGVLKDGAESTESAGSAGGNQPNL 186

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE E L  ++ G T  E+A  L IS  TV  ++++I+RKT    R     +  R 
Sbjct: 187 DELTPREHEVLRLLARGYTYKEMAERLFISVKTVETHVSNILRKTQQTNRRSLSRWMERR 246

Query: 244 N 244
           N
Sbjct: 247 N 247


>gi|325674370|ref|ZP_08154059.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325555050|gb|EGD24723.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 780

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +     D    +   LT RE E    ++EG T+ EIA  L ISR TV+ ++  I+ K 
Sbjct: 702 EQSREPMPDTPGQERTVLTKREHEVAELVAEGLTNKEIAQRLTISRRTVDGHVDHILTKL 761

Query: 229 ATKTRSGAIAY 239
              +R     +
Sbjct: 762 GFTSRVQVATW 772


>gi|223940647|ref|ZP_03632489.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223890693|gb|EEF57212.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 243

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 57/151 (37%), Gaps = 10/151 (6%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLF 148
           +S  +    +  +  E    +   + +       ++   + Y       A +R  L+ + 
Sbjct: 85  MSGIECTVRLKAQCPETQIVILTAMDDQELVFMALEAGADGYLLKRTKPADLRCALLDVL 144

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G  +          +A      F+    +  +   L+ RE + L  +S+G ++  IA 
Sbjct: 145 GGGAPM-------TSQIARRVIESFRRKAKNPNEYAHLSMREEQILRLLSQGYSNKLIAD 197

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L +S +TV +++  +  K    +R+ A+  
Sbjct: 198 KLELSIDTVCSHLKRVFEKLHVSSRTEAVVR 228


>gi|325675273|ref|ZP_08154958.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325553979|gb|EGD23656.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 771

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +  PA   NR  + T       +G        R      L E+   A   A+       
Sbjct: 647 GVVIPALRSNRDEARTLC--EGALGARAFDTAVRRGCELTLDEVVDFA--VADRLPEAAP 702

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +LT RE E    +++G T+  IA  L IS+ TV  ++  ++ K    +R+   A
Sbjct: 703 TERAASDLTPREQEVAELVAQGLTNKAIAEKLVISQRTVQGHVEHVLAKLGFNSRTQIAA 762

Query: 239 YAVRNN 244
           + V   
Sbjct: 763 WVVERG 768


>gi|261254003|ref|ZP_05946576.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP
           102891]
 gi|260937394|gb|EEX93383.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP
           102891]
          Length = 215

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTS 203
           ++      II  +      + +    +     D H      +LT RE++ L  +  G ++
Sbjct: 113 LIAKGCEEIINGENWLPRKVASQLLFHYRNVVDTHTSPATVDLTTREIQILRCLMVGSSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA  + IS  TV +++  I +K + K R  A A+A ++
Sbjct: 173 IQIAEDMFISEFTVKSHLQKIFKKLSVKNRVQAAAWAKQH 212


>gi|148544128|ref|YP_001271498.1| two component LuxR family transcriptional regulator [Lactobacillus
           reuteri DSM 20016]
 gi|148531162|gb|ABQ83161.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri DSM 20016]
          Length = 217

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S     G    L+ RE E L  I  G T+ EIA  + IS  TV  +   IM+K    + +
Sbjct: 144 SPHFDLGNYVALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHA 203

Query: 235 GAIAYAVRNNIV 246
             + YAV++ +V
Sbjct: 204 ELLHYAVKHRLV 215


>gi|332143243|ref|YP_004428981.1| transcriptional regulator NarL [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553265|gb|AEA99983.1| transcriptional regulator NarL [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 217

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL--------LAAYQ 169
           ++      + +    +   V     G +L       I+ D+L E  L        L    
Sbjct: 80  DSRIIMLTVSDNDEDVVEAVRSGADGYLLKDMDPEDIV-DKLREAALGKMVMSAKLTEVL 138

Query: 170 ANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           A   +  +    +    LT RE+E L  I++G ++  IA  L IS  TV  ++   ++K 
Sbjct: 139 ATALRKPERAGSRALASLTSRELEILKLIAKGMSNKLIARELDISDGTVKVHVKHFLKKL 198

Query: 229 ATKTRSGAIAYAVRN 243
             ++R  A  + V +
Sbjct: 199 NLRSRVEAAVWMVNH 213


>gi|302187383|ref|ZP_07264056.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
          Length = 87

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W + GKT+ EIA I   S  TV+ + ++I RK    + S A+  A+R 
Sbjct: 22  VQLTVKERQILEWAAIGKTAWEIARIQKCSEATVHFHTSNIRRKFDVHSLSAALVIAIRQ 81

Query: 244 NIV 246
            ++
Sbjct: 82  GVI 84


>gi|300742422|ref|ZP_07072443.1| two-component system response regulator [Rothia dentocariosa M567]
 gi|300381607|gb|EFJ78169.1| two-component system response regulator [Rothia dentocariosa M567]
          Length = 215

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 36/230 (15%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++  +        +  L    G    ++   D      L   V +  P   +  + +  
Sbjct: 2   RIVIAEDQFLLRQGLENLFTRHGFE--VVAAVD--DGPSLTDAVLTHRPDVALIDIRMPP 57

Query: 95  KDKYYNVLQRPTELF-----CPVF-------HTLPENITPPAGMDNRYCSL--TFDVARI 140
                  L+   ++       PV            + +    G+   Y      FD A  
Sbjct: 58  TF-TDEGLRAAVQIRKQIPGQPVLILSQYVERLYVDELHMDGGLGTGYLLKDRVFDDAGF 116

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G ++  + L E+    A Q  + +           LT RE+E LT ++EG
Sbjct: 117 VRSVKAVAAGGVVVDPETLKELMEHRAVQQRLER-----------LTSRELEVLTLMAEG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKT------RSGAIAYAVRNN 244
            ++ +IA  L ++  TV  +I ++  K           R  A+ + +RN 
Sbjct: 166 LSNGDIAEKLFVAEKTVAKHINTLFAKLDLPDTNSNARRVQAVLHLLRNG 215


>gi|288904765|ref|YP_003429986.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|288731490|emb|CBI13044.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
          Length = 198

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +    +D  L+ +E   L  IS GKT+ EIA  L +S  TV NYI+S
Sbjct: 116 VLAGKKEYSPELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISS 175

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K +   R  A   A  + 
Sbjct: 176 ILNKLSANNRVEATRIAEEHG 196


>gi|270159175|ref|ZP_06187831.1| LuxR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|269987514|gb|EEZ93769.1| LuxR family transcriptional regulator [Legionella longbeachae
           D-4968]
          Length = 247

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 21/175 (12%)

Query: 83  PFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYC---SLTFDVA 138
           P D      L E        L+   +   P+F  + E +        R     SL F + 
Sbjct: 56  PLDAWHKYYLQEGYADIDRTLEATEQSLLPIFWDVKEQLRLAKNKRMRRFKQESLIFGLD 115

Query: 139 RIRIGLMLLFPKGR---IILRDRLWE-------------IGLLAAYQANMFKSYDVHWGK 182
           +    + L  PKG    ++L  R+ E             +G+L  Y   +    +     
Sbjct: 116 KGLC-IPLHGPKGEFVILVLHQRINEHGLKNWENHVDTWLGILHTYFHFLRLLLNEKKIG 174

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              LT RE ECL   +EG   + IA +L IS+ TVN ++ +  +K     +  AI
Sbjct: 175 VVPLTKREQECLRLTAEGFRLELIAQLLKISKRTVNFHLQNANKKLGVTNKYLAI 229


>gi|224540370|ref|ZP_03680909.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518021|gb|EEF87126.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 219

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 35/68 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  KD  LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  
Sbjct: 145 HTLKDDLLTPAERSVLKEIALGKTTKEIAAEKNLSFHTVNSHRKNIFRKLGVNNVHEATK 204

Query: 239 YAVRNNIV 246
           YA++  IV
Sbjct: 205 YAMKAGIV 212


>gi|254467179|ref|ZP_05080590.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
 gi|206688087|gb|EDZ48569.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
          Length = 231

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D    +  +LT ++   L  I EGK + +IA  L I+  TV  +I +IMRK   ++R+
Sbjct: 150 SSDDVLQRLSQLTNQQARILQLICEGKLNKQIAYDLSIAETTVKAHITAIMRKLGVQSRT 209

Query: 235 GAIAYA 240
            A+  A
Sbjct: 210 QAVLAA 215


>gi|167640433|ref|ZP_02398697.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|254735503|ref|ZP_05193211.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|167511653|gb|EDR87035.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|206975821|ref|ZP_03236732.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962842|ref|YP_002341420.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|206745915|gb|EDZ57311.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217067023|gb|ACJ81273.1| DNA-binding response regulator [Bacillus cereus AH187]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|331696783|ref|YP_004333022.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951472|gb|AEA25169.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 892

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  ++   T+ EI   + +S NTV  ++ SI RK    +R  A+A  V   I
Sbjct: 825 LSDREVEVLGHLAAMLTAAEIGAEMFVSVNTVKTHLKSIYRKLGVSSRRQAVARGVELGI 884

Query: 246 V 246
           V
Sbjct: 885 V 885


>gi|296505776|ref|YP_003667476.1| two-component response regulator YocG [Bacillus thuringiensis
           BMB171]
 gi|296326828|gb|ADH09756.1| two-component response regulator YocG [Bacillus thuringiensis
           BMB171]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|227823525|ref|YP_002827498.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
 gi|227342527|gb|ACP26745.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
          Length = 258

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT REV+ L  I  G  +  IA  LG+S NTV  ++ +I +K   + R+ A +   R+
Sbjct: 188 LTTREVQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAASRYFRH 245


>gi|332291578|ref|YP_004430187.1| transcriptional regulator, LuxR family [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169664|gb|AEE18919.1| transcriptional regulator, LuxR family [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 476

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E+   A  +    +           L+ RE E L  +S+G T+ +I   L IS  TV  +
Sbjct: 396 ELQATADTKERTLQESVAQLSTTHNLSKRETEVLLELSKGYTNKQIGEELHISIATVKFH 455

Query: 221 IASIMRKTATKTRSGAI 237
            ++I  K     RS  I
Sbjct: 456 TSNIYAKLDVSNRSEVI 472


>gi|325922351|ref|ZP_08184126.1| Transcriptional regulator, LuxR family protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325547170|gb|EGD18249.1| Transcriptional regulator, LuxR family protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 506

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---EL 186
           Y     D+   +   M L      +++D  W    L    AN+ ++      +     EL
Sbjct: 376 YLLSLMDITDRKRTEMELVAAIEEVMQDASWFSQTLLEKLANVRRANRPSQAQSCGIAEL 435

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           TGRE + L  ++EG    EIA  L ++ NTV N++A++  K    +R  AI +A    
Sbjct: 436 TGRERDVLGLLAEGLADKEIAQQLSVAPNTVRNHVAALYSKIDVHSRGEAIVWARERG 493


>gi|222055689|ref|YP_002538051.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
 gi|221564978|gb|ACM20950.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
          Length = 216

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 36/74 (48%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +   +       L+ +E + + +I++G  + EIA  L IS  TV  +I+ I +K    
Sbjct: 143 HNQPSHLKPAGRANLSKKEQDIVAFIAQGLKNKEIAQRLCISEQTVKTHISRIFKKVDVV 202

Query: 232 TRSGAIAYAVRNNI 245
           +RS  +  A++  I
Sbjct: 203 SRSQLVPLALKLRI 216


>gi|171914538|ref|ZP_02930008.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 236

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +          +LT  +  +  G     P        R       A  Q +
Sbjct: 92  VEQVMELGASGYLIKQTAAHALTKAIREVYKGNSFFSPTISR----RRNHHAQKAYNQGD 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +             L+ RE E L  I+EGK + E A IL IS  TV  +  S+M K    
Sbjct: 148 L-----PSRKAPSRLSSRETEVLQLIAEGKANKETAEILHISVKTVEKHRQSLMEKLNIH 202

Query: 232 TRSGAIAYAVRNNIV 246
             +    +A+   I+
Sbjct: 203 DTASLTRHAIATGII 217


>gi|261821119|ref|YP_003259225.1| LuxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|84620008|gb|ABC59302.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum]
 gi|261605132|gb|ACX87618.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  EIA+IL I  +TV  +I ++++K        AI   V   +
Sbjct: 180 FSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVELQL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|56415510|ref|YP_152585.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364436|ref|YP_002144073.1| hypothetical protein SSPA3234 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129767|gb|AAV79273.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197095913|emb|CAR61490.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 8/139 (5%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNR----YCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           +   E+        PE       MD      +  + F+V  +   +         +L   
Sbjct: 59  EFCREVLQRTAQQFPEVKIIITAMDGSQKWLHEVMQFNVQAV---VPRDSDAETFVLALN 115

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
               G++     +   S ++       L+ R+ E L  ++ G+++ +I   L IS  TV 
Sbjct: 116 TVARGMM-FLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTRTVK 174

Query: 219 NYIASIMRKTATKTRSGAI 237
            ++ S+ R+   K R+ A 
Sbjct: 175 AHLESLYRRLDVKNRTQAA 193


>gi|163845622|ref|YP_001633666.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222523324|ref|YP_002567794.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163666911|gb|ABY33277.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447203|gb|ACM51469.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 213

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (40%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           R     L    R +LR  L+    L                    L+ RE E L  ++ G
Sbjct: 105 RAADAELIAAIRAVLRGELYIHPALTRQLLEDLLPQTPALNPWESLSEREREVLLLVARG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+ EIA  L +S  TV  Y    M K   ++R+  + YA+ +N++
Sbjct: 165 YTAAEIAEQLSLSPKTVETYRTRGMEKLGLRSRAALVQYALNHNLL 210


>gi|307328780|ref|ZP_07607951.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306885588|gb|EFN16603.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 217

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 69/219 (31%), Gaps = 11/219 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +D      M +  L E   A   +L   D   E     +     P  ++  + +
Sbjct: 1   MIRVLVVDDQQLVRMGLRMLFEQA-ADIEILGEADNGAEAV--RLAERLAPDVVLMDLRM 57

Query: 93  SEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIGLML 146
              D       +L            T  ++      +    C         A +   +  
Sbjct: 58  PGMDGITATRRILAARPAARVVALTTFDDDDHLYPVLGAGACGFLVKDTPPAELLNAVRR 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                    RD L  I  +A        S          +T RE E L  +  G ++ EI
Sbjct: 118 AADGEAPFSRDTLDRI--VAQAVHTRSASDAGPDIPAPAITPREREVLGLLGVGLSNKEI 175

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +   TV  ++AS+M KT    R      AVR  I
Sbjct: 176 ADRLHLGVTTVKTHVASLMTKTGRDNRIRLAVLAVRAGI 214


>gi|239813946|ref|YP_002942856.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239800523|gb|ACS17590.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 247

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   VF      +         Y         I   ++ +      I    +    +
Sbjct: 94  CEPLVISVFGDEENVLASIEAGAVGYIHKDAAPEDIAQTIVEMKAGASPISP--MIARRV 151

Query: 165 LAAYQANMFKSYDVHWGKDFE----------LTGREVECLTWISEGKTSDEIAVILGISR 214
           LA Y++            +            L+ RE E LT I+ G +  EIA + G+S 
Sbjct: 152 LAKYRSLQLAGTLAAAPPEAALGNTTTAPSLLSAREHEVLTLIARGFSYAEIARLKGLSV 211

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +TV  +I ++  K A  ++S A+  A R  ++
Sbjct: 212 HTVQTHIKNLYGKLAVHSKSEAVFEATRLGLL 243


>gi|118480385|ref|YP_897536.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045516|ref|ZP_03112747.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|118419610|gb|ABK88029.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023723|gb|EDX62399.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|158318162|ref|YP_001510670.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113567|gb|ABW15764.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 238

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 9/169 (5%)

Query: 83  PFDLVRCMALSEKDKY------YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + ++  D          + + P  L    F          A     +      
Sbjct: 54  PDVILLDIRMARMDGVDALRALARLGEHPPALVLTTFSDDDVVWGAMAAGAAGFILKDRP 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   + L+   G  I         LL A +        V   +   L+ RE++ L  
Sbjct: 114 AEDIVRAIRLVAEGGSWIDPSASGR--LLGALRTGAVADLAVRR-RFERLSERELQVLRA 170

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ G ++ EIA+ L +S  TV  ++ SI  K   + R+GAI  A    +
Sbjct: 171 MARGASNREIAIELRVSERTVKAHVGSIFGKLEVRDRAGAIVLAHDVGL 219


>gi|65317330|ref|ZP_00390289.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|319791283|ref|YP_004152923.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315593746|gb|ADU34812.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 230

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R+VE L  +S+GK +  I   LGIS  TV  ++A+I R    + R+ A+  A
Sbjct: 167 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAA 221


>gi|239944489|ref|ZP_04696426.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL
            15998]
 gi|239990948|ref|ZP_04711612.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL
            11379]
          Length = 1049

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 184  FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            F LT RE +    ++ G T+ +IA  L IS  T + ++++I+ K    +R  A A A R 
Sbjct: 984  FGLTPREQDVHRLVAAGHTNRKIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRL 1043

Query: 244  NI 245
             +
Sbjct: 1044 RL 1045


>gi|227364555|ref|ZP_03848616.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|325682330|ref|ZP_08161847.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
 gi|227070392|gb|EEI08754.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|324978169|gb|EGC15119.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
          Length = 223

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S     G    L+ RE E L  I  G T+ EIA  + IS  TV  +   IM+K    + +
Sbjct: 150 SPHFDLGNYVALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHA 209

Query: 235 GAIAYAVRNNIV 246
             + YAV++ +V
Sbjct: 210 ELLHYAVKHRLV 221


>gi|108802949|ref|YP_642886.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764192|gb|ABG03074.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 222

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           DV  I      L     ++    + E+  LA       +    +  +   LT RE E L 
Sbjct: 109 DVDEILDAARRLAAGEPLMSPQEVAEMIRLAGRSREEERGLRENAAR---LTPREREVLQ 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG ++ EIA  L +S +T   ++ +I+ K    +R  A+  A R  +V
Sbjct: 166 ALAEGLSNREIAERLHMSVDTERTHMVNILSKLGAHSRLQALVLAARAGVV 216


>gi|302524738|ref|ZP_07277080.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302433633|gb|EFL05449.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 218

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D  LT RE E L  I +G  + EIA  L IS  TV  +I ++  K    +R+ A+ YA
Sbjct: 149 EPDLSLTAREREILGLIGDGLRNPEIAAALVISEATVKTHINNLFAKAGFHSRADAVRYA 208

Query: 241 VR 242
           ++
Sbjct: 209 LK 210


>gi|29829791|ref|NP_824425.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606900|dbj|BAC70960.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           DF L+ REVE +  I+ G  + +IA    IS  TV N+I  I  K  + TRS AIA+
Sbjct: 176 DFGLSSREVEVMDLIAAGMNNRQIAATCFISEKTVKNHINRIFAKLHSATRSEAIAH 232


>gi|46201160|ref|ZP_00055614.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 190

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 14/173 (8%)

Query: 78  VSSDWPFDLVR-CMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENITPPAGMDNRYC 131
           + +D P DL+   + +   D +  +L+   +L              + I           
Sbjct: 24  LDADEPLDLILLDLNMPGMDGFTGLLRLREDLPDTPIIVVSASEEEDVIEQALACGAAGF 83

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                        + L   G I   + ++                 +   K   LT R+ 
Sbjct: 84  IPKSSSKERMCEAVGLVMSGEIFRPEEIFGTKAKVI--------DPLLEEKLGSLTHRQR 135

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L+ ++ GK++ +IA  L ++  TV  ++ +I+RK    +R+ A+  A +  
Sbjct: 136 MVLSLLARGKSNKQIAYELDVTNTTVKAHMTAILRKLKVTSRTQAVIVARQIG 188


>gi|330899224|gb|EGH30643.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330980772|gb|EGH78875.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 87

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R 
Sbjct: 22  VQLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 81

Query: 244 NIV 246
            ++
Sbjct: 82  GVI 84


>gi|330888196|gb|EGH20857.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 87

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G +  TV+ + ++I RK    +   A+  A+R 
Sbjct: 22  VQLTVKERQVLEWVAIGKSAWEISRIQGCTEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 81

Query: 244 NIV 246
            ++
Sbjct: 82  GVI 84


>gi|326381419|ref|ZP_08203113.1| two component transcriptional regulator, LuxR family protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326199666|gb|EGD56846.1| two component transcriptional regulator, LuxR family protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 209

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           +   G  L+    R+   D + +  +       M            ELT REV+ L  + 
Sbjct: 100 KSASGAELVAGVHRVADGDAVLDAAVTRVVVDAMRARPADPGPDLSELTDREVQVLGGLG 159

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G ++ +IA  L I   TV  +++ ++ K   ++R  A   A R+ +
Sbjct: 160 AGLSNAQIAGRLTIGEATVKTHVSRVLMKLGVQSRVQAAVLAARSGV 206


>gi|289165996|ref|YP_003456134.1| Transcriptional regulator, LuxR family with an autoinducer-binding
           domain [Legionella longbeachae NSW150]
 gi|288859169|emb|CBJ13099.1| Transcriptional regulator, LuxR family with an autoinducer-binding
           domain [Legionella longbeachae NSW150]
          Length = 248

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 21/175 (12%)

Query: 83  PFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYC---SLTFDVA 138
           P D      L E        L+   +   P+F  + E +        R     SL F + 
Sbjct: 57  PLDAWHKYYLQEGYADIDRTLEATEQSLLPIFWDVKEQLRLAKNKRMRRFKQESLIFGLD 116

Query: 139 RIRIGLMLLFPKGR---IILRDRLWE-------------IGLLAAYQANMFKSYDVHWGK 182
           +    + L  PKG    ++L  R+ E             +G+L  Y   +    +     
Sbjct: 117 KGLC-IPLHGPKGEFVILVLHQRINEHGLKNWENHVDTWLGILHTYFHFLRLLLNEKKIG 175

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              LT RE ECL   +EG   + IA +L IS+ TVN ++ +  +K     +  AI
Sbjct: 176 VVPLTKREQECLRLTAEGFRLELIAQLLKISKRTVNFHLQNANKKLGVTNKYLAI 230


>gi|239939692|ref|ZP_04691629.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986176|ref|ZP_04706840.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291443118|ref|ZP_06582508.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346065|gb|EFE72969.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 216

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  ++ G ++ EIA  L +   TV ++++S++ K   + R+ A+  A  +  
Sbjct: 153 LTDREAAVLRLMARGMSNAEIAADLVVGIQTVKSHVSSVLAKLGARDRTQAVIAAYESGF 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|225387858|ref|ZP_03757622.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme
           DSM 15981]
 gi|225046041|gb|EEG56287.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme
           DSM 15981]
          Length = 210

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE + +  +++G  + EIA  L ++  TV N ++ ++ K   K R+    +AV+N
Sbjct: 148 FNLTDRERDIVRLVAQGMDNREIARTLYLAEGTVRNNLSRVLEKLELKDRTQLAVFAVKN 207

Query: 244 NI 245
           N+
Sbjct: 208 NL 209


>gi|118592487|ref|ZP_01549878.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
 gi|118434834|gb|EAV41484.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
          Length = 207

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE+E L  I++G  +  IA  L +S +T+  +I  I+ K     R+ A A
Sbjct: 142 LTPRELEVLALIAQGHQNKNIAANLSLSEHTIKLHIHHIISKMGVSNRTEAAA 194


>gi|329945873|ref|ZP_08293560.1| putative oxygen regulatory protein NreC [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328528321|gb|EGF55299.1| putative oxygen regulatory protein NreC [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 237

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y +       +   +  +          RL    +L
Sbjct: 100 RFLALSVSDASDDVVGVIRAGARGYVTKAISTEDLAQAVRRVAAGDAAFSP-RLAGF-VL 157

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ A   +        D  L+ RE E +  I+ G T  E A  L IS  TV  ++++++
Sbjct: 158 DAFGAGTGEVAVADTELD-RLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVL 216

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R+    +AV   IV
Sbjct: 217 RKLQLSNRNELTRWAVARRIV 237


>gi|319653107|ref|ZP_08007209.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2]
 gi|317395028|gb|EFV75764.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2]
          Length = 199

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +G++  LT RE E L  I++GK + EIA  L I   TV NYI++I+ K     R  A
Sbjct: 129 DDVYGEENPLTDREKEVLELIADGKNTREIADQLSIKTGTVRNYISAILDKLEVTNRIEA 188

Query: 237 I 237
           I
Sbjct: 189 I 189


>gi|311744719|ref|ZP_07718516.1| nitrate/nitrite response regulator protein NarL [Aeromicrobium
           marinum DSM 15272]
 gi|311312028|gb|EFQ81948.1| nitrate/nitrite response regulator protein NarL [Aeromicrobium
           marinum DSM 15272]
          Length = 222

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 4/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   V     + I         Y +       +   +  +     +    RL    L
Sbjct: 85  MRFLALSVSDAAEDVIGVIRAGARGYVTKNISGPELLDAIARVAAGDAVFSP-RLAGFVL 143

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            A          D    +   LT RE E +  I+ G    E+A  L IS  TV  +++S+
Sbjct: 144 DAFAGTIEVAQIDTDLDR---LTEREREVMRLIARGYAYKEVAKELFISIKTVETHVSSV 200

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           +RK    +R     +A    ++
Sbjct: 201 LRKLQLSSRHELTRWANDRRLI 222


>gi|253987735|ref|YP_003039091.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638613|emb|CAR67232.1| similar to probable transcription regulator sdia of escherichia
           coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779185|emb|CAQ82345.1| similar to probable transcription regulator SdiA of Escherichia
           coli [Photorhabdus asymbiotica]
          Length = 242

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   + RE+E L + ++G  S EIA  + ++++TV+ ++ +I++K   + +  AIA A  
Sbjct: 179 EISFSHRELEVLRYTADGMISSEIASTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAAL 238

Query: 243 NNIV 246
              +
Sbjct: 239 LGYI 242


>gi|149189059|ref|ZP_01867347.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148837022|gb|EDL53971.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 216

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 6/161 (3%)

Query: 84  FDLVRCMALSEKDKYYNVLQR-PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           FD    + L ++     +  +    +   V H L        G          D  +I I
Sbjct: 58  FDYEESLDLFQQVLNLPLASKNFETVLINVPHRLTTEEILRYGHIKGLFYSHEDAKKIVI 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           GL  +      + R+      LL  Y+  +  +         +LT RE+E L  +  G +
Sbjct: 118 GLGEIINGKNWLPRE--VTSQLLHHYRHVVSANTSPTV---VDLTAREIEILRCLQSGAS 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + +I+  L I+ +TV +++  + RK + K R  AIA+A +N
Sbjct: 173 NLQISEDLFITESTVKSHLYQVFRKLSVKNRLQAIAWANQN 213


>gi|313903315|ref|ZP_07836707.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466403|gb|EFR61925.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 256

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S      +   LT R+VE L  ++ G ++ EIA  L +S  TV N ++ I  +   + R 
Sbjct: 179 SRPAPAEQGEPLTPRQVEVLQLLARGVSNREIAARLHLSEGTVKNLVSEIYARLQVRDRV 238

Query: 235 GAIAYA 240
            A+  A
Sbjct: 239 QAVLRA 244


>gi|294631146|ref|ZP_06709706.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           sp. e14]
 gi|292834479|gb|EFF92828.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           sp. e14]
          Length = 290

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            F+L+ RE E +  I+ G T+ +IA    IS  TV N+I  I  K  + +R+ A A 
Sbjct: 218 RFQLSTREAEIMDLIASGMTNHQIAAACFISEKTVKNHINRIFAKLHSTSRAEAAAK 274


>gi|256395900|ref|YP_003117464.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362126|gb|ACU75623.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 232

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 29/213 (13%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L    +  + ++   V+       VR +  ++           T     V   LP+    
Sbjct: 19  LTAMVVVADPRVRQSVTRHLWALGVRDVLEAQTAAEARSRMSATRDLAVVDIHLPDGSGL 78

Query: 123 PAGMDNRYC--------SLTFDVARIRIGLM-----LLFPKGRIILRDRLWEIGLLAAYQ 169
               + R          S   D   +R  L       +    R +   R    G+ AA  
Sbjct: 79  QLLAEMRAAGWAGGLAVSAADDAGAVRAALASGVRGFVITGARPVAAGRPGMTGVHAASA 138

Query: 170 ANMFKSYDVHWGKDF----------------ELTGREVECLTWISEGKTSDEIAVILGIS 213
             +  +  +  G                   +L+ RE+E L  +++G+++  I   +G+S
Sbjct: 139 NRVRPAGGLPPGAAALAGAGGAAQAAHAGCRDLSAREIEVLRLVADGRSNKAIGQAMGLS 198

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV +++A I RK  T  R+G +A A+R   +
Sbjct: 199 ALTVKSHLARIARKLGTGDRAGMVAVALRGGTI 231


>gi|229020573|ref|ZP_04177315.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229026791|ref|ZP_04183123.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228734514|gb|EEL85176.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228740737|gb|EEL90993.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 189

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA +L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|297192036|ref|ZP_06909434.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719515|gb|EDY63423.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 227

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 5/168 (2%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRYCSLTFDV 137
           P  ++  + +   D      Q   E    V      ++              +     + 
Sbjct: 60  PDVVLMDVQMPRLDGVSATRQVVAEKLADVLVLTTFDLDEYVFGALRAGAAGFLLKNTEA 119

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     +I       +    A    +  +          LT RE E L+ +
Sbjct: 120 GDLLQAVRTVARGEGMIAPAVTRRLIAEFAAPGPVRSADAPDPAVLDTLTRREREVLSCL 179

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++ EIA  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 180 GEGMSNAEIAARLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 227


>gi|167615608|ref|ZP_02384243.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257142156|ref|ZP_05590418.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 214

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 10/154 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A+ E  + +  L+              E I       + Y         I   +  +   
Sbjct: 62  AMGEILRAHPGLRFVVFTALGSEARAAEAI---RFGASGYLLKWCSPDGIVQAIRRVMAG 118

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              I    L E  + +A       S         ELT RE + L  I++G  + EIA +L
Sbjct: 119 RVHIDPS-LDEARVASAAGGRALASP------VDELTRREKQVLKLIADGMRNREIASLL 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IS  TV+ +   +M+K   +  +  I +A R  
Sbjct: 172 NISPKTVDCHRQRLMQKLGARNVANVIHWAYRYG 205


>gi|167577459|ref|ZP_02370333.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 214

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 10/154 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A+ E  + +  L+              + I       + Y         I   +  +   
Sbjct: 62  AMGEILRAHPGLRFIVFTALGSEARAADAI---RFGASGYLLKWCSPDGIVQAIRRVMAG 118

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              I    L E  + +A       S         ELT RE + L  I++G  + EIA +L
Sbjct: 119 RVHIDPS-LDEARVASAAGGRALASP------VDELTRREKQVLKLIADGMRNREIASLL 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IS  TV+ +   +M+K   +  +  I +A R  
Sbjct: 172 NISPKTVDCHRQRLMQKLGARNVANVIHWAYRYG 205


>gi|83716526|ref|YP_439048.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83650351|gb|ABC34415.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 223

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 10/154 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A+ E  + +  L+              E I       + Y         I   +  +   
Sbjct: 71  AMGEILRAHPGLRFVVFTALGSEARAAEAI---RFGASGYLLKWCSPDGIVQAIRRVMAG 127

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              I    L E  + +A       S         ELT RE + L  I++G  + EIA +L
Sbjct: 128 RVHIDPS-LDEARVASAAGGRALASP------VDELTRREKQVLKLIADGMRNREIASLL 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IS  TV+ +   +M+K   +  +  I +A R  
Sbjct: 181 NISPKTVDCHRQRLMQKLGARNVANVIHWAYRYG 214


>gi|306830765|ref|ZP_07463929.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304427112|gb|EFM30220.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 198

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +    +D  L+ +E   L  IS GKT+ EIA  L +S  TV NYI+S
Sbjct: 116 VLAGKKEYSPELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISS 175

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K +   R  A   A  + 
Sbjct: 176 ILNKLSANNRVEATRIAEEHG 196


>gi|159044888|ref|YP_001533682.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157912648|gb|ABV94081.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
          Length = 220

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML---LFPKGRIILRDRLWEIGLLAAY 168
           V    P+       M +    ++  ++    G +L   L  + R+ +   +     +   
Sbjct: 78  VLEKCPDTRILILSMHDSAEYISTAMSHGARGYILKDVLTDEIRLAIEAVMRGETYMCTG 137

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            +   +       +   LT RE   L  ++ GK++ E+A  L IS  TV  +  +I RK 
Sbjct: 138 ASASLEPNTADGREP--LTSREQTILLQLASGKSNKEVAATLDISVRTVETHRKNIKRKL 195

Query: 229 ATKTRSGAIAYAVRNNIV 246
              + +G   YA+ + ++
Sbjct: 196 GISSTAGLTRYAMEHGVL 213


>gi|24380308|ref|NP_722263.1| putative response regulator [Streptococcus mutans UA159]
 gi|290579719|ref|YP_003484111.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24378323|gb|AAN59569.1|AE015020_4 putative response regulator [Streptococcus mutans UA159]
 gi|254996618|dbj|BAH87219.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 226

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 65/170 (38%), Gaps = 6/170 (3%)

Query: 82  WPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTF 135
            P  ++  + + + D       V +    +   +  T  ++      +    + Y     
Sbjct: 47  QPDLVLMDIRMPKMDGVLCTKAVKENYPNVKVIILTTFDDDDFIFKALQYGASGYILKGI 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +  +   ++ +     +I  D   ++  L +  A    +  V       ++  E + + 
Sbjct: 107 SMEDLYQAIVTVNKGNAMINPDVATKVVKLFSQMAQSNSAIQVQGNSVENISKAEWKIIQ 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I  G ++ EIA  L +S  T+ NY+++I+ K   + R+    +AV+  +
Sbjct: 167 QIGFGLSNKEIAAKLFLSEGTIRNYLSTILSKLNLRDRTQLAIWAVQTGV 216


>gi|89094688|ref|ZP_01167624.1| probable two-component response regulator [Oceanospirillum sp.
           MED92]
 gi|89081034|gb|EAR60270.1| probable two-component response regulator [Oceanospirillum sp.
           MED92]
          Length = 213

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE + L+ +  G ++ EIA  L I+  TV  +++SI +KT    R   +  A + 
Sbjct: 154 LSSREHDVLSVLVTGASNKEIARELDITERTVKAHLSSIFQKTGVTDRVSLVLMASKQ 211


>gi|315505170|ref|YP_004084057.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315411789|gb|ADU09906.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 256

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V+  +D  L+ RE+E L   +EG ++ +IA  L ++  TV  ++ +I  K +  +R  
Sbjct: 159 DHVYGRRDEVLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSRID 218

Query: 236 AIAYAVRNNIV 246
           A+  AV  +I+
Sbjct: 219 AVNKAVAASII 229


>gi|258653900|ref|YP_003203056.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258557125|gb|ACV80067.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 205

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE++ L  ++EG+T+  IA  L +S  TV +++A I RK  T  RS  +A A
Sbjct: 139 GRLGRLTARELDVLRLVAEGRTNKWIAEQLSLSALTVKSHLARISRKLGTGDRSHQVAVA 198

Query: 241 VRNN 244
           +R  
Sbjct: 199 MRAG 202


>gi|170756196|ref|YP_001781032.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           B1 str. Okra]
 gi|169121408|gb|ACA45244.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           B1 str. Okra]
          Length = 217

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         I  G+        ++  D    I L   Y+  +    D      + L
Sbjct: 100 ASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKEL---NDDDISLKYNL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NNIV
Sbjct: 157 TEREINIIRQIANGFSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIV 216


>gi|158314279|ref|YP_001506787.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158109684|gb|ABW11881.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 211

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    R I   R      +        +       +   L  RE + L  I+EG T+ +I
Sbjct: 113 LVGAIRTIAAGRSLLDPAVTQKVLARLRDEPAEDEQLAALGSRERQILRLIAEGMTNRQI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  + +S  TV NY+++I+ K    +R+ A  +A R  
Sbjct: 173 AGCVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAARLK 210


>gi|308397497|ref|ZP_07669369.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu012]
 gi|308366829|gb|EFP55680.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu012]
          Length = 340

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E + +  +SEG ++ +IA  L +S  TV  ++  +  K    +R   +  A R  
Sbjct: 279 LTPTERDVVRLVSEGLSNKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 337


>gi|262165666|ref|ZP_06033403.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus VM223]
 gi|262025382|gb|EEY44050.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus VM223]
          Length = 222

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 7/161 (4%)

Query: 86  LVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVAR 139
           L+  + +        +L+ R      PV     E+     +   A     Y + +    +
Sbjct: 52  LLLDLNMPGMTGLSGLLELRNVAPTTPVAVISAESDKQTVLQTLAYGAVGYVAKSCARQQ 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +      +      +  D L E  +  +    +             LT ++++ L ++S+
Sbjct: 112 MGEAFAQILRGDVYLPADILREN-VKTSPNHFLRNQTGFSAETLQTLTRKQLQVLQFMSK 170

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G  + +IA  L IS  TV +++++I++K     R  A+  A
Sbjct: 171 GSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAVLGA 211


>gi|291302711|ref|YP_003513989.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571931|gb|ADD44896.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 8/177 (4%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITPPAGMDNR---YC 131
           V    P   +  + + + D      +      E+   +  T  E+      + +    + 
Sbjct: 38  VRKHRPDMALLDIRMPKMDGLSAAAEIRRIAPEVGVIILTTFGEDEYIARALGDGASGFL 97

Query: 132 SLTFDVARIRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
             + D   +  G+  +      +     +     L                 K  +LT R
Sbjct: 98  LKSGDPRELIAGIHAVAAGAAFLSPQVAQRVIAELARGSGGGKLSRAATARTKIDKLTDR 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  +  G ++ EIA  L +   TV  Y+++I+ +   + R  A   A    +V
Sbjct: 158 EREVLALVGAGCSNAEIAKRLHVVEGTVKAYVSAILTRLEVRNRVQAAIIAYEAGLV 214


>gi|206970462|ref|ZP_03231415.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735039|gb|EDZ52208.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|84502331|ref|ZP_01000479.1| two-component response regulator [Oceanicola batsensis HTCC2597]
 gi|84389691|gb|EAQ02410.1| two-component response regulator [Oceanicola batsensis HTCC2597]
          Length = 213

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 14/134 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          +     L   + +I  G+  L P               +A    +
Sbjct: 90  VVSALSAGADGYLLKEQPAAILIRQLRQIMDGVPALSP--------------AIARRIMH 135

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F+      G+D  LT RE E L  I  G  + E+A  LGI+ +TV  Y+    RK    
Sbjct: 136 HFRLTGPLTGQDAALTDREREVLGLIGRGLRNAEVAAELGIAVSTVAGYVKDTYRKLGIS 195

Query: 232 TRSGAIAYAVRNNI 245
           +R+ A  +A R  +
Sbjct: 196 SRAEAAWHATRLGL 209


>gi|330721944|gb|EGG99887.1| Nitrate/nitrite response regulator protein [gamma proteobacterium
           IMCC2047]
          Length = 217

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L L      ++  +      L+      + ++         
Sbjct: 101 AGADGYLLKDCEPEDLMEKLRLAATGKSVLDDE------LVQIVTHALRENKPTPPSSKN 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE + L  ++  K++  IA  LGI+  TV  ++ +++RK   K+R  A  +A+ N
Sbjct: 155 LLTARERDILDLLAACKSNKVIANELGITDGTVKVHVKNLLRKLNLKSRIEAAVWALEN 213


>gi|307727953|ref|YP_003911166.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588478|gb|ADN61875.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003]
          Length = 494

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   +       +   L+ RE++ L  IS G ++ E A  L +S +TV  ++ S+ RK  
Sbjct: 418 APAGRRSATRATQGARLSAREMDVLRMISRGASNKEAARELAMSPSTVRTHVESMFRKLD 477

Query: 230 TKTRSGAIAYAVRNNIV 246
             TR+ A   A    ++
Sbjct: 478 CSTRAAATLKASALGLL 494


>gi|237718329|ref|ZP_04548810.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|229452262|gb|EEO58053.1| transcriptional regulator [Bacteroides sp. 2_2_4]
          Length = 255

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  + +G  S EIA  L +S NTVN +  +I++K        A+ +A R
Sbjct: 190 DEPLTNRELEVLRLMKQGLLSKEIANTLKVSINTVNTHRQNILQKLKANNSIEAVNFAQR 249

Query: 243 NNI 245
             +
Sbjct: 250 LGL 252


>gi|23098290|ref|NP_691756.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22776515|dbj|BAC12791.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 207

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I++G  +D+IA+ L IS  TV N++ +I+RK     R+ A+  A R   
Sbjct: 147 LTDREWDILIEIAKGNNNDQIALNLEISDKTVKNHVTTILRKLDVNDRTNAMLLAFRKGW 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|226946038|ref|YP_002801111.1| transcriptional regulatory protein AcoK, LuxR family [Azotobacter
           vinelandii DJ]
 gi|226720965|gb|ACO80136.1| transcriptional regulatory protein AcoK, LuxR family [Azotobacter
           vinelandii DJ]
          Length = 900

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 163 GLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           G LA Y A + +    D      F L+ RE + L  ++ G+++ EIA  L IS  TV  +
Sbjct: 814 GELAGYLAILRERLGGDDCAEPPFSLSERESQTLRLVAAGQSNKEIARTLDISVETVKWH 873

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++  K    +R+ A++ A   +++
Sbjct: 874 LKNLYGKLQVTSRTRAMSRARELSLL 899


>gi|312130002|ref|YP_003997342.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311906548|gb|ADQ16989.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 219

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 5/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV +D    L+  + ++EK K      +   +         +NI     +      L  
Sbjct: 51  DIVLADLQMPLLNGLEMAEKLKEQFPKTK---VVILTMSEDSQNIKAALTLGIEGYILKS 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                 I  +    +G+    +R+ +I  L    +    S  +   +   LT RE E + 
Sbjct: 108 ATKTELIQCIKEVSEGKRYFSERIEKI--LNQIPSEATPSGKLASEEIKSLTRREKEIIR 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++E  ++ +IA  L I+  TV  +  ++M+K    +    I   ++  I+
Sbjct: 166 LVAEDMSNAQIAETLHIAPTTVETHRRNLMKKLGVNSAVALIKLGMKYGII 216


>gi|303256175|ref|ZP_07342191.1| two component transcriptional regulator, LuxR family
           [Burkholderiales bacterium 1_1_47]
 gi|331001230|ref|ZP_08324856.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
 gi|302860904|gb|EFL83979.1| two component transcriptional regulator, LuxR family
           [Burkholderiales bacterium 1_1_47]
 gi|329568957|gb|EGG50753.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
          Length = 228

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  ++ G +  EI+ +L IS +TV  +I  I RK    +R  A+  A +  
Sbjct: 164 PLSPRETEVLNLLARGMSFAEISSVLNISCHTVTAHIKKIYRKLQVHSRGEAVYEAAQLG 223

Query: 245 IV 246
           I+
Sbjct: 224 IL 225


>gi|291299471|ref|YP_003510749.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568691|gb|ADD41656.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 216

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 73/200 (36%), Gaps = 9/200 (4%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           L   +G+++ + V             V    P  ++  + +   D     ++R  +L  P
Sbjct: 17  LRTILGSANDIEVIDTALDGAAGVEAVVRHRPDVVLMDLRMPGVDG-LTAIERIAKLPEP 75

Query: 112 --VFHTLPENITPPAGMDNRYCSLTFDVARI----RIGLMLLFPKGRIILRDRLWEIGLL 165
             V      +         R  ++ F V        IGL+ +   G ++L         +
Sbjct: 76  PKVVALTTFDADHYVLRALRAGAMGFLVKSTPPEDLIGLVRVAADGHVVLSP--VAARRM 133

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A  A+   + D       ELT RE E L  + EG ++ EI   L +S  TV  Y++ ++
Sbjct: 134 VAASADEQSTRDELRSLVGELTERETEVLARLGEGLSNAEIGKRLYLSEATVKGYVSRLL 193

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K     R+ A   A    +
Sbjct: 194 LKLGCDNRTQAGLLARDAGL 213


>gi|225867334|ref|YP_002752712.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225790979|gb|ACO31196.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|196233724|ref|ZP_03132564.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222238|gb|EDY16768.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 208

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A    + F        +   LT RE E LT ++ G    EIA  LGIS +TV  ++ +I
Sbjct: 130 IARKVVSHFHLARPANPEMQTLTPREHEILTLLARGLHYKEIADQLGISTSTVRAHLHTI 189

Query: 225 MRKTATKTRSGAIAY 239
             K   ++R+ A+  
Sbjct: 190 YGKLHVQSRTEAVVK 204


>gi|89899800|ref|YP_522271.1| ATP-dependent transcription regulator LuxR [Rhodoferax
           ferrireducens T118]
 gi|89344537|gb|ABD68740.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Rhodoferax ferrireducens T118]
          Length = 930

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E+  L  + EG ++  +A  L +S +TV  ++ +I  K    +R+ A+A A R  
Sbjct: 868 PLTRKEIRVLQLLVEGYSNSAMAEKLFVSDSTVRTHLRNINMKFGAHSRTQAVAIARRLG 927

Query: 245 IV 246
           ++
Sbjct: 928 LI 929


>gi|30265375|ref|NP_847752.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47778416|ref|YP_022268.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188186|ref|YP_031439.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871303|ref|ZP_02215952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635735|ref|ZP_02394045.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170688151|ref|ZP_02879362.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708082|ref|ZP_02898530.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651949|ref|ZP_02934532.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190569108|ref|ZP_03022007.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227818115|ref|YP_002818124.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603443|ref|YP_002869565.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687206|ref|ZP_05151064.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724707|ref|ZP_05186490.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254742263|ref|ZP_05199950.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755822|ref|ZP_05207854.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762162|ref|ZP_05214008.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30260053|gb|AAP29238.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47552121|gb|AAT34743.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182113|gb|AAT57489.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712970|gb|EDR18498.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167528844|gb|EDR91601.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127055|gb|EDS95934.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667844|gb|EDT18596.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082653|gb|EDT67717.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190559776|gb|EDV13762.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227003949|gb|ACP13692.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229267851|gb|ACQ49488.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|33863139|ref|NP_894699.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9313]
 gi|33635056|emb|CAE21042.1| product possible regulatory protein, luxR family [Prochlorococcus
           marinus str. MIT 9313]
          Length = 74

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE   L  + +G T+ EI   + I+  T   ++ SI+RK   + R+ A A  +R 
Sbjct: 13  LTPRERFVLRLVCDGFTNREIGHQMFIAETTARGHVNSILRKLGVRNRAAAAAEGIRR 70


>gi|262403969|ref|ZP_06080524.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
 gi|262349001|gb|EEY98139.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
          Length = 222

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 1/112 (0%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y + +    ++      +      +  D L E  +     +++ K  D        LT 
Sbjct: 101 GYVAKSCARQQMGEAFAQILRGDVYLPADILREN-VKNPPSSSLRKQADFSVEALQTLTR 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++++ L  +S+G  + +IA  L IS  TV +++++I++K     R  A+  A
Sbjct: 160 KQLQVLQSMSKGAANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAVVGA 211


>gi|218900478|ref|YP_002448889.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543280|gb|ACK95674.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|332974286|gb|EGK11218.1| hypothetical protein HMPREF9374_2036 [Desmospora sp. 8437]
          Length = 438

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++  I  IL IS +T   Y  +I+RK   K R  A+A   R  +
Sbjct: 377 LTRREQELLQMIAYGYSTKHIGEILHISEHTAAEYAQTILRKLNAKNRPEAVAKGFRLGM 436

Query: 246 V 246
           +
Sbjct: 437 I 437


>gi|282861267|ref|ZP_06270332.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282563925|gb|EFB69462.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 1044

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 18/186 (9%)

Query: 71   EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
            E +L     +D P D       +     +  L+RP EL   V H   E++   +G     
Sbjct: 862  EAELARAEGTDTPEDW------ARAAAAFGPLRRPYELAQ-VRHRWAESVIAASGDRGTA 914

Query: 131  CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-----------FKSYDVH 179
              L  +   +   L  L     I L  R   I L                          
Sbjct: 915  TELLREAHTVAERLGALPLAKNIGLLARRARIALTGPADHGRAGGPGGEDGETLSEPAAD 974

Query: 180  WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + F LT RE E    ++ G T+  IA  L IS  T + ++++I+ K    +R  A A 
Sbjct: 975  AVESFGLTSREQEVHRLVAAGYTNRRIAEELYISPKTASVHVSNILAKLGVASRGEAAAL 1034

Query: 240  AVRNNI 245
            A R  +
Sbjct: 1035 AHRFRL 1040


>gi|49480425|ref|YP_039344.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196036499|ref|ZP_03103894.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218906530|ref|YP_002454364.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|300117868|ref|ZP_07055635.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301056821|ref|YP_003795032.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|49331981|gb|AAT62627.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195990832|gb|EDX54805.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218538999|gb|ACK91397.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|298724732|gb|EFI65407.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300378990|gb|ADK07894.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|332528810|ref|ZP_08404787.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332041876|gb|EGI78225.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 181

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           R+ E L  + +G T+ EI  +L +S  TV N++++I+R     TR+ A+  A ++ 
Sbjct: 110 RQEEVLRLLLDGLTNKEIGRLLDLSDETVKNHVSNILRCFGVATRTQAVLAARKHG 165


>gi|324329302|gb|ADY24562.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|314924490|gb|EFS88321.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|315094740|gb|EFT66716.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315102902|gb|EFT74878.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328589|gb|EGE70349.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 242

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +
Sbjct: 178 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 237

Query: 246 V 246
           V
Sbjct: 238 V 238


>gi|229158912|ref|ZP_04286969.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228624523|gb|EEK81293.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 189

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 34/65 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLLLAKEGKTANEIARALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNN 244
           A    
Sbjct: 183 AEEKG 187


>gi|262200217|ref|YP_003271425.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262083564|gb|ACY19532.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 489

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE + L  +S+G ++ EIA  L IS  TV  +++ I+ K   ++R  A  +
Sbjct: 431 LTERERDVLRCVSDGLSNAEIAAALVISEATVKTHVSRILMKLGLQSRVQAAIF 484


>gi|226315402|ref|YP_002775298.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226098352|dbj|BAH46794.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 596

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 16/254 (6%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDL---LARMIPLDCTVSWTMRMYALTEYVGAS 59
            E QQ  + ++ +  Q T  + ++P +++      R++ +D  V     +  +       
Sbjct: 349 LEQQQGTLSVHSQSGQGTVVIWNVPIQAEAGKGSIRLLIVDDQVMIADSLQQILSQ--QD 406

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           +F++V      ++ L+          L  V    ++  +    + +R   +   V  T  
Sbjct: 407 NFIVVGTASDGQEALEQCERHQPDIVLMDVHMQGMNGLEAILQMKERWPNMKIVVMTTFE 466

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +++   + +++          R +     +    ++I     W   L+A       K   
Sbjct: 467 DSVQAASALEHGAEGYMLKSTRPK----EMMEALKLIYSGGTWLDQLIATRVFEEMKRQR 522

Query: 178 VHWGK-----DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               K      + LT RE E L  +S+G     IA  L +S  TV NY +++  K     
Sbjct: 523 EQLEKYSPNDPYGLTKREREILQLLSDGLRYKSIATKLYLSEGTVRNYCSTLYSKLGVSN 582

Query: 233 RSGAIAYAVRNNIV 246
           R  AI  A   NI+
Sbjct: 583 REEAIELARTENIL 596


>gi|213029272|ref|ZP_03343719.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 48

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA 
Sbjct: 1   MKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAA 48


>gi|42784527|ref|NP_981774.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42740459|gb|AAS44382.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 200

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|56962495|ref|YP_174221.1| two-component response regulator of nitrate reduction [Bacillus
           clausii KSM-K16]
 gi|56908733|dbj|BAD63260.1| two-component response regulator of nitrate reduction [Bacillus
           clausii KSM-K16]
          Length = 215

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          +     L   +  +  G   + P+             +  +     
Sbjct: 91  FHVLKNGAAGYVLKNAPDDELLSAIRTVHSGGTYIHPQ-------------MATSLVREF 137

Query: 173 FKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            K       +D    L+ REVE L  I++G  + EIA  L +S  TV  + A IM K   
Sbjct: 138 IKKDSERAEQDLFNGLSQREVEILPLIAKGFGNKEIAEKLYVSVKTVEAHKAKIMEKLNL 197

Query: 231 KTRSGAIAYAVRNNIV 246
           K+R   + YA++  ++
Sbjct: 198 KSRPELVEYALKKKLL 213


>gi|242243808|ref|ZP_04798252.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|242232744|gb|EES35056.1| transcriptional regulator [Staphylococcus epidermidis W23144]
          Length = 218

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 6/175 (3%)

Query: 78  VSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYC 131
           V    P  L+  +++   +        + +   E    +       E +        +  
Sbjct: 42  VLEHQPDVLILDLSMPPGESGLIATSKISESFPETKILILTMFDDEEYLFHVLKSGAKGY 101

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
            L        I  +    +G   +  +L    +      +              L+ RE+
Sbjct: 102 ILKNSPDEQLILAVRTVYQGETYVDMKLTTSLVNEFVNQSQTDEVSPSSDPFKILSKREL 161

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I++G  + +IA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 162 EILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLL 216


>gi|239929196|ref|ZP_04686149.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
          Length = 291

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            F+L+ RE E +  I+ G  + +IA    IS  TV N+I  I  K  + +RS A A 
Sbjct: 222 RFQLSTREAEIMDLIASGMNNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAAK 278


>gi|257054297|ref|YP_003132129.1| two component transcriptional regulator, LuxR family
           [Saccharomonospora viridis DSM 43017]
 gi|256584169|gb|ACU95302.1| two component transcriptional regulator, LuxR family
           [Saccharomonospora viridis DSM 43017]
          Length = 208

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 23/175 (13%)

Query: 78  VSSDWPFDLVRCMALSE---KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YC 131
           V+   P  LV  + +      D    + +R +     +  T   +      MD     Y 
Sbjct: 51  VAEHDPDVLVADIEMPRGSGLDVAAELHRRGSRTKVLIVTTFARSGYLRRAMDAGVTGYV 110

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                +  +   L  +   G ++      E+ L A             W    +LT RE 
Sbjct: 111 LKDAPIGELADALRKVHAGGTVVSA----ELALAA-------------WDHSDQLTDRER 153

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  +++G T+ +IA  L ++  TV NY+++ M K   + R+ A   A     +
Sbjct: 154 ELLRQVADGATNRDIARRLHLAEGTVRNYLSAAMAKLGARNRTEAAKAARERGWI 208


>gi|271966802|ref|YP_003340998.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509977|gb|ACZ88255.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G ++ EIA  L IS  TV  ++ +++ K   + R+ A+  A  +  
Sbjct: 150 LTSREADVLRLMTRGLSNGEIAGELVISMETVKTHVGNVLAKLEARDRTRAVITAYESGF 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|225175237|ref|ZP_03729233.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169413|gb|EEG78211.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 215

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 60/156 (38%), Gaps = 10/156 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143
           +R   ++  +    V+    E    +  +  ++    A +      Y     D A++   
Sbjct: 55  IRMPGMNGIEACQEVVANVPETKVVMLTSYGDDEAVYASIMAGAMGYILKKTDSAKLVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++     +++        +  K+          LT  E + L  I+EGKT+
Sbjct: 115 IERVAAGESLLDPQVTFKV-------LSQMKNIAAGKQSGKTLTEMEKKVLLLIAEGKTN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  + ++  TV NY++ I  K     R+ A AY
Sbjct: 168 KQIAEEIFLAEKTVRNYVSKIFLKLNLSNRAAAAAY 203


>gi|297200976|ref|ZP_06918373.1| two component LuxR family transcriptional regulator [Streptomyces
           sviceus ATCC 29083]
 gi|197712244|gb|EDY56278.1| two component LuxR family transcriptional regulator [Streptomyces
           sviceus ATCC 29083]
          Length = 233

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 75/195 (38%), Gaps = 7/195 (3%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCP 111
            + +G +H  +    L +  + D +V+     DL ++ ++  E  +     + P  +   
Sbjct: 24  IDVIGTTHNGMEAIVLVRTTRPDVVVT-----DLNLQTISGLEMIRRLGKEEEPPSVVVF 78

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
                 + ++                 +  I  +     G+ +L   +    L++ ++A 
Sbjct: 79  TASEDDKTVSDVLHASASCLLGKDASPQELITAIQAAAAGQTMLAPSIA-ARLVSWFRAQ 137

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 V   +  ELT RE E    ++ G +++E+A  L I   TV  ++  +  K   +
Sbjct: 138 PEPQEAVMCPEVAELTPREREVTRMVALGMSTEEVASELIIGEATVRTHLYRVRTKLGVR 197

Query: 232 TRSGAIAYAVRNNIV 246
            R+  ++ A R  ++
Sbjct: 198 DRAELVSLAYRTGLI 212


>gi|254425145|ref|ZP_05038863.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192634|gb|EDX87598.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 223

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 79/196 (40%), Gaps = 20/196 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFC 110
           +Y+    + +V     +E    +++    P  ++  + + E D Y     + Q P++ + 
Sbjct: 40  DYLEFRGYQVVTAGNGREAL--TMLPELSPDMIICDVMMPEMDGYAFVEQIRQDPSKSWI 97

Query: 111 PVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           P+     +      +       + Y    F+   +   +     +   ++          
Sbjct: 98  PILFLSAKGQSQDRVKGLTTGADVYMVKPFEPEELVAQVESSLKQANRLIH--------H 149

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               ++   +  V +  D ELT  E++ + +++ G  + +IA  L +S+ T+ +++++++
Sbjct: 150 QNKGSSSMPTIQVPF--DVELTPTELKVVQFVARGMANRQIADELRVSQRTIESHVSNML 207

Query: 226 RKTATKTRSGAIAYAV 241
            KT    R+    +AV
Sbjct: 208 GKTGLHNRTELARWAV 223


>gi|209552217|ref|YP_002284132.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539329|gb|ACI59261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 258

 Score = 82.7 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 65/199 (32%), Gaps = 21/199 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           +Y     +   R D  Q+  L S     W +D          D    + +  ++   PV 
Sbjct: 69  DYWFDRGYF--RIDPVQQVALRSTAPFFWNYD---------TDADTLINRFMSDDTAPVA 117

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQA 170
             L E              +            + F       R  L  I    LLA    
Sbjct: 118 RYLNERDM----STGVTVPVHMPGGDYATVTGIRFGGNSEFERHALRYIADFNLLAHVFH 173

Query: 171 NMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
               S             LT RE ECL   +EG ++ EI+ I+G S  TV  ++ +  +K
Sbjct: 174 ETAYSLFDKKALSVGTVRLTERERECLRHSAEGFSAKEISRIIGRSVPTVVMHLNAAAKK 233

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+ A+  A    ++
Sbjct: 234 LGARNRTQAVVRATHYRLL 252


>gi|297161015|gb|ADI10727.1| transcriptional regulator, LuxR family protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 257

 Score = 82.7 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 43/96 (44%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R ++   L     + A QA +         +   LT RE + L  I+ G T+D+ A
Sbjct: 155 LHPIRDLIATALDYQAKVTAIQAEISAGPPAAPPRRCTLTERENQVLALIATGHTNDQAA 214

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LGIS  T+  ++  +  K    +R+ A+A+ +R 
Sbjct: 215 RKLGISPRTIRKHLEGVFSKANVPSRAAAVAWWLRQ 250


>gi|229492666|ref|ZP_04386467.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121]
 gi|229320325|gb|EEN86145.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121]
          Length = 285

 Score = 82.7 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 8/157 (5%)

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII--- 154
           +  +  R  + F P+   L  +I     +  R   +  +    +  L         +   
Sbjct: 128 HVRLGDRWFDSFTPLVRRLERDIAVEDEVGRRLNLIRANAEAEQATLTRTDIHDIAMELA 187

Query: 155 -LRDRLWEIGLLAAYQA--NMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            L D + +  L A  +A  N F              L  RE+E L  ++ G ++ EIA  
Sbjct: 188 DLADHITDATLRARIEAVGNRFAPILTPHSLAPPTLLRPREIEVLEHVARGSSNREIAEA 247

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LG+  NTV +Y+ S MRK     R  A+  A    ++
Sbjct: 248 LGLLPNTVKSYLKSAMRKLHANNRIQAVLAARELGVL 284


>gi|182412194|ref|YP_001817260.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839408|gb|ACB73660.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 214

 Score = 82.7 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 43/85 (50%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           IG   A        +        +++ RE + L +++EG +S EIA  LG+S  TV N+ 
Sbjct: 120 IGPAVARAVRRMAGHPERIDSKLDISTRERDVLRFVAEGLSSKEIAQRLGLSVRTVENHR 179

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           ASI R+T  ++ +    +A R  +V
Sbjct: 180 ASITRRTGLRSVAQLTLHAARLGLV 204


>gi|310640662|ref|YP_003945420.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245612|gb|ADO55179.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 214

 Score = 82.7 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--- 176
           I    G  +++  LT    R              +L++ L E  + A +  N  + Y   
Sbjct: 67  IARGRGFRSKFILLTSSATREDFLKAEEASVDGYVLKEALPEELIYAIHLVNKGRKYYDP 126

Query: 177 --------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                   +       +LT +E E L  + +G  + EIA  L IS  TV  +++ I+ K 
Sbjct: 127 AILENKLREDAGNLTDDLTPKEKEVLVELGQGACNREIASRLFISEFTVKKHVSQILAKL 186

Query: 229 ATKTRSGAIAYAVRNNI 245
               R+ A  YA    +
Sbjct: 187 RLADRTQAALYANAIGL 203


>gi|309799837|ref|ZP_07694044.1| transcriptional regulatory protein DegU [Streptococcus infantis
           SK1302]
 gi|308116553|gb|EFO54022.1| transcriptional regulatory protein DegU [Streptococcus infantis
           SK1302]
          Length = 227

 Score = 82.7 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 82  WPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTF 135
            P  ++  + +   D       V +   ++   +  T  ++    + +    + Y     
Sbjct: 47  HPDLILMDIRMPGMDGVLATKEVKEHYPDIKIIILTTFDDDEFIYSALKYGASGYLLKGA 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + ++   G +I  +   ++  + +  A    S  V      +L+  E   + 
Sbjct: 107 STEELYEAIKVVHQGGAMINPNIASKVFQIFSQMAKSNFSIAVDEDNVKDLSTTEWRIIQ 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  G+++ EIA  L +S  TV NY+++I+ K   + R+    ++V+  +
Sbjct: 167 EVGYGESNKEIAAKLFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQTGV 216


>gi|257057243|ref|YP_003135075.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587115|gb|ACU98248.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 216

 Score = 82.7 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 4/154 (2%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAG-MDNRYCSLTFDVARIRIGLMLLFPKGR 152
              +    L +P  +       + E ++       N +     +   +   +  L   G 
Sbjct: 65  RALRAIQTLPKPPAVAMLTTFDIDEYVSLALRFGANGFLLKDIEPIMLVRAIRDLARGGA 124

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++          +     +  ++          L+ RE E +T I +G ++ EI   L +
Sbjct: 125 VLDPGV---AARMVNAHRDGQRASAPARELLASLSDREREVVTLIGQGLSNAEIGGRLHL 181

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  Y+++++ K     R  A   A R  +V
Sbjct: 182 SEATVKGYVSAVLSKIGAANRVQAALLAYRGGLV 215


>gi|254509824|ref|ZP_05121891.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
 gi|221533535|gb|EEE36523.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
          Length = 215

 Score = 82.7 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 5/138 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAY 168
           +   LP+       M +    ++  ++    G +L       I +     +     L   
Sbjct: 73  ILERLPDTRILILSMHDSPEYISTALSHGARGYVLKDVPTEAIKQAIDAVMRGEQYLCTG 132

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            +   +  D        LTGRE   L  +++GK++ E+A+ L IS  TV  +  +I RK 
Sbjct: 133 ASGSLEPKD--GNAREALTGREQTILLELAQGKSNKEVALALDISVRTVETHRKNIKRKL 190

Query: 229 ATKTRSGAIAYAVRNNIV 246
              + +G   YA+ + ++
Sbjct: 191 GISSTAGLTRYALEHGVL 208


>gi|254254914|ref|ZP_04948231.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158]
 gi|124899559|gb|EAY71402.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158]
          Length = 510

 Score = 82.7 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 122 PPAGMDNRYCSLT--FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
            P  +  + C L    D++  +   M L       ++D  W    L    AN  ++    
Sbjct: 364 EPVAIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANARRANAPD 423

Query: 180 WGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            G    +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI 
Sbjct: 424 AGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIV 483

Query: 239 YAVRNNIV 246
           +A    IV
Sbjct: 484 WARERGIV 491


>gi|300694462|ref|YP_003750435.1| nitrate/nitrite response regulator in two-component regulatory
           system with narx, regulates anaerobic respiration and
           fermentation (luxr/uhpa familiy) [Ralstonia solanacearum
           PSI07]
 gi|299076499|emb|CBJ35824.1| Nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           PSI07]
          Length = 217

 Score = 82.7 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 3/134 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V     E           Y     +   +  G+        +I         L+A ++A 
Sbjct: 84  VSEEADELKATLRDGARGYLVKNIEADALVAGVRKAAAGEPVIAES--MTAKLVAHFRAP 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +       +  LT RE + +  +  G ++ EIA  L ++ +TV  ++ +I++K    
Sbjct: 142 ERAAQPEAIPVE-RLTARERDIVQGLVRGDSNKEIARALDVAESTVKIHVQNILKKLNLT 200

Query: 232 TRSGAIAYAVRNNI 245
           +R     YAV N +
Sbjct: 201 SRVQIAVYAVENGL 214


>gi|298245015|ref|ZP_06968821.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297552496|gb|EFH86361.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 931

 Score = 82.7 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  +++G T+ +IA  L +S  T   ++ASI+ K   + R  A+A A   +++
Sbjct: 872 TRREEEVLRLLAQGATNQDIARQLVVSLGTAKKHVASILSKLGAENRLQAVARAHERSLL 931


>gi|258653704|ref|YP_003202860.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556929|gb|ACV79871.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 229

 Score = 82.7 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E +  +++G+++  I   L +S  TV +++A I RK  T  R+  +A A+R  
Sbjct: 167 DLSSREIEVIRLVADGRSNKWIGDQLSLSALTVKSHLARIGRKLGTGDRAHMVALAMRAG 226

Query: 245 IV 246
           ++
Sbjct: 227 VI 228


>gi|294677045|ref|YP_003577660.1| LuxR family two component transcriptional regulator [Rhodobacter
           capsulatus SB 1003]
 gi|294475865|gb|ADE85253.1| two component transcriptional regulator, LuxR family [Rhodobacter
           capsulatus SB 1003]
          Length = 206

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTS 203
           F    +  R  +  + L+A+   ++F  +D    ++      LT RE E L  I  G+T+
Sbjct: 106 FVPKAMPARSIIGAVTLMAS--GSVFAPFDFLKQEEPPVQGGLTARETEVLRGICAGRTN 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  + +   TV  ++ ++ RK   + R+ A   A  N 
Sbjct: 164 KEIAREMDLQEVTVKLHVRTLTRKIGARNRTHAAMIARENG 204


>gi|296130518|ref|YP_003637768.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022333|gb|ADG75569.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 209

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G    LT RE E L  ++ G ++  +   L I+  TV  ++     K     R+ A+
Sbjct: 138 VRGGTGERLTPREREVLAGVARGLSNAAVGRELFITEATVKTHLLRAFAKLGVDDRTRAV 197

Query: 238 AYAVRNNIV 246
             A+   I+
Sbjct: 198 TVAIERGIL 206


>gi|215412247|ref|ZP_03421007.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           94_M4241A]
 gi|298525962|ref|ZP_07013371.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495756|gb|EFI31050.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
          Length = 183

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 116 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 174


>gi|213968144|ref|ZP_03396289.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383850|ref|ZP_07232268.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058473|ref|ZP_07250014.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato K40]
 gi|302133415|ref|ZP_07259405.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213927124|gb|EEB60674.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331016272|gb|EGH96328.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 87

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I RK    +   A+  A+R 
Sbjct: 22  VQLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 81

Query: 244 NIV 246
            ++
Sbjct: 82  GVI 84


>gi|126729883|ref|ZP_01745696.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
 gi|126710002|gb|EBA09055.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
          Length = 212

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 16/163 (9%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAG-MDNRYCSLTFDVARIRIG 143
           +    L        +L+R  +    V   H  PE I+         Y         I+  
Sbjct: 56  LNMPGLGGLSATEMILERAPDTRILVLSMHDTPEYISTALTHGARGYVLKDVPTDEIKHA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +        G L            ++ G    LT RE   L  +++GK++
Sbjct: 116 IDAVMRGERYLCTGA---SGALT----------PINTGGRDPLTNREQTILLQLAQGKSN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+AV L IS  TV  +  +I RK    T +G   YA+ + ++
Sbjct: 163 KEVAVALDISVRTVETHRKNIKRKLGIATTAGLTRYALEHGVL 205


>gi|109897088|ref|YP_660343.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109699369|gb|ABG39289.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica
           T6c]
          Length = 881

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 6/166 (3%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            +    + ++  F L     L  ++KY +  +    +       +P +         ++ 
Sbjct: 708 SRFGFSIQTNTAFPLPLPYQLELQEKYADAAEVWINM------EMPYHAALSLLHCEQHS 761

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +        R+   +      + +RD+  ++G+L    +     Y         LT +E 
Sbjct: 762 AKDALPRAFRMLEAIGAKATLLKVRDKAKQLGVLEDLPSARRGPYKQTRQHPAGLTAKEQ 821

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + L ++S G ++ EIA +L  S+ TV N+++SI+ K     R  AI
Sbjct: 822 QVLGYLSAGSSNQEIADLLSRSQRTVENHVSSILSKLNVANRMEAI 867


>gi|239983191|ref|ZP_04705715.1| two component LuxR family transcriptional regulator [Streptomyces
           albus J1074]
          Length = 326

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 9/134 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V                   ++   V  +  G + +  +         +   +L A  + 
Sbjct: 119 VLEAARAGARGLLLKSGGQEAILSGVRDVAAGGIAMSTE---------FVSQILKALHSA 169

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + +  +     LT RE++    +S+G T+ +I+  L +S  TV ++   I  K   +
Sbjct: 170 YLPAAERPFRDISLLTPREMQVFRLVSQGLTNQQISNRLVLSEATVKSHFNRICHKLDLR 229

Query: 232 TRSGAIAYAVRNNI 245
            R  A+  A    I
Sbjct: 230 NRVDAVILAYETGI 243


>gi|284991540|ref|YP_003410094.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064785|gb|ADB75723.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 215

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 12/148 (8%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           +        T +        P+ + P      + Y     D   I   +  +   G  + 
Sbjct: 67  RVLRERGHRTPVLVLTSFGEPDLVVPALVAGADGYLLKYQDGESILDAVRCIAAGGAPVD 126

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
              +    +LA  +           G+   LT RE E L  + +G  +  IA  L IS  
Sbjct: 127 P--MVTAAVLADLR---------DRGQGDLLTDREKEVLELVRQGLPNKVIARRLRISEA 175

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRN 243
           TV  ++  I+++     R+ A  +A R 
Sbjct: 176 TVKTHVTRILQRIGATDRTQAALWAERR 203


>gi|160883554|ref|ZP_02064557.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483]
 gi|156110967|gb|EDO12712.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483]
          Length = 275

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 3/107 (2%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + IG M + P  +        +  +L       F    +       LT RE+E L  I +
Sbjct: 171 LVIGNMDISPDQK---HSETVDCTVLNLKNGEFFSPSSLIMPSSLNLTNREIEILRLIQK 227

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  S EIA  L IS +TVN +  +++RK   +    AI       ++
Sbjct: 228 GLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 274


>gi|15893532|ref|NP_346881.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023075|gb|AAK78221.1|AE007537_6 Response regulator (CheY-like recever domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325507651|gb|ADZ19287.1| Response regulator (CheY-like recever domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 208

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + + LT RE+E L  I +G ++ EIA  L +S  TV NYI S++ K   + R+    + +
Sbjct: 146 EQYNLTEREMEVLRNIGDGLSNKEIASKLYLSEGTVRNYITSLLEKLELRDRTQLAIFYL 205

Query: 242 RN 243
           +N
Sbjct: 206 KN 207


>gi|25027179|ref|NP_737233.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259506684|ref|ZP_05749586.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|23492460|dbj|BAC17433.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259165729|gb|EEW50283.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
          Length = 230

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 47/156 (30%), Gaps = 29/156 (18%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
            L   V     + I         Y + +     +   +  +                 LA
Sbjct: 76  FLALSVSDAAEDVIAIIRAGARGYVTKSISGEELVEAINRVNSGDAFFSP-------RLA 128

Query: 167 AYQANMFKSYDVHWGKDF----------------------ELTGREVECLTWISEGKTSD 204
            +  + F + D   G                          LT RE+E L  ++ G T  
Sbjct: 129 GFVLDAFAAPDSRAGAGIVDAPEKDAAVEKGAVIDDPIVDALTRRELEVLRLLARGYTYK 188

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EI   L IS  TV  + ++I+RKT    R     +A
Sbjct: 189 EIGKELFISVKTVETHASNILRKTQQSNRHALTRWA 224


>gi|302550551|ref|ZP_07302893.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468169|gb|EFL31262.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 6/144 (4%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           + P  +    F                +     D   +   + L+     ++    +   
Sbjct: 80  EPPRIIVVTTFENDSYVYDALRVGAAGFLLKRSDADALVQAVRLVARSDSLLFPAAVRT- 138

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA   A    +      K   LTGRE E L  +++G T+ EIA  + +   TV +++A
Sbjct: 139 --LATAHARAHPAPPAWVAK---LTGREREVLRRMADGLTNAEIARRMEVGPATVKSHVA 193

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ KT T+ R+ A+  A     +
Sbjct: 194 AVLAKTGTRDRTQAVIAAYEAGFL 217


>gi|300775044|ref|ZP_07084907.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
 gi|300506859|gb|EFK37994.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
          Length = 210

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 7/152 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L   + +   +K    +     + C  F    +           Y      + +I   + 
Sbjct: 58  LQDMLGIEIIEKLRKEMPDTQFIMCTSFDDDEKIFNSLKAGAMGYLVKGESMDKILSSIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            ++  G  +          +A      F++         ELT RE E L  +S+G    E
Sbjct: 118 DVYSGGAPMSFS-------IARRVLKHFENKLPEVEGFDELTEREKEILELLSQGLLYKE 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           IA    IS +TV  ++ +I RK     +  A+
Sbjct: 171 IADKKFISIDTVKKHVGNIYRKLHVNNKVEAV 202


>gi|297191263|ref|ZP_06908661.1| two component transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718452|gb|EDY62360.1| two component transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 219

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 12/175 (6%)

Query: 81  DWPFDLV------RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYC 131
           D P DLV        +   E  +       P +    V  T  ++    A +    N + 
Sbjct: 45  DHPVDLVLMDIRMPGIDGVEATRRIRAEHPPEKTRVIVLTTFDQDDIVLAALRAGANGFL 104

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGRE 190
           S T   A +  G+  +   G  +         L+     +     D    + F  LT RE
Sbjct: 105 SKTVSPAELVAGITEVVGGGGALSAA--ATAALIGHMTDSPPPLIDKELLRRFSALTPRE 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + +  ++ G  +DEIA  + +S  TV  +    M K   + R+  +++A R  +
Sbjct: 163 RDVVVLVASGLGNDEIAAQMSVSPFTVKTHAVRAMTKVGARDRAQLVSFAFRAGL 217


>gi|330965398|gb|EGH65658.1| regulatory protein, LuxR [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 105

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G S  TV+ + ++I  K    +   A+  A+R 
Sbjct: 40  VQLTVKERQVLEWVAIGKSAWEISRIQGCSEATVHFHTSNIRHKFGVTSLKAALVMAIRQ 99

Query: 244 N 244
            
Sbjct: 100 G 100


>gi|315123291|ref|YP_004065297.1| two-component system regulatory protein [Pseudoalteromonas sp.
           SM9913]
 gi|315017051|gb|ADT70388.1| two-component system regulatory protein [Pseudoalteromonas sp.
           SM9913]
          Length = 204

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LTG+E   L  +S G ++  IA  L  S  T+ N+++ I+ K   K R+ A+  
Sbjct: 138 LSPQLCLTGKEQTVLQCLSLGMSNKVIAKKLDNSEGTIRNHVSQILAKLEVKDRTQAVIK 197

Query: 240 AVRNNIV 246
           A+ +N++
Sbjct: 198 AINHNLI 204


>gi|255263647|ref|ZP_05342989.1| positive regulator AgmR [Thalassiobium sp. R2A62]
 gi|255105982|gb|EET48656.1| positive regulator AgmR [Thalassiobium sp. R2A62]
          Length = 204

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ L  +++GK++ EIA  L I   TV  ++ ++ RK     R+ A   A    
Sbjct: 143 NLTQRELQVLEGLTQGKSNKEIARDLEIQEPTVKLHMKTLYRKLEASNRTQAALIAREAG 202

Query: 245 I 245
           +
Sbjct: 203 L 203


>gi|170766690|ref|ZP_02901143.1| transcriptional regulator, LuxR family [Escherichia albertii
           TW07627]
 gi|170124128|gb|EDS93059.1| transcriptional regulator, LuxR family [Escherichia albertii
           TW07627]
          Length = 200

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|290955399|ref|YP_003486581.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644925|emb|CBG68011.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 245

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+      +    +R  + G     +            ++  LT RE++ +  ++ G T+
Sbjct: 140 LLRHVTAEKAEAPERKEKTGRAEKRRQEGGAGPGAPRSQE-ALTERELDVVRLVALGHTN 198

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  + +S +TV  ++ SI  K A + R    A+A R  
Sbjct: 199 AEIAASMFVSLSTVKTHLGSIQLKLAARNRVEIAAWAWRTG 239


>gi|239944305|ref|ZP_04696242.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990759|ref|ZP_04711423.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447772|ref|ZP_06587162.1| response regulator [Streptomyces roseosporus NRRL 15998]
 gi|291350719|gb|EFE77623.1| response regulator [Streptomyces roseosporus NRRL 15998]
          Length = 216

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 5/168 (2%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRYCSLTFDV 137
           P  ++  + +   D      Q   E    V      ++            + +     D 
Sbjct: 49  PDLVLMDVQMPRLDGVSATRQVVAEELADVLVLTTFDLDEYVFGALRAGASGFLLKNTDA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     +I       +    A    +             LT RE E L  +
Sbjct: 109 RELLEAVRTVARGEGLIAPAVTRRLIAEFAGTTPVRTRETADPVVLDTLTRREREVLGCL 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++ EIA  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 169 GEGLSNAEIAARLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 216


>gi|167646647|ref|YP_001684310.1| two component LuxR family transcriptional regulator [Caulobacter
           sp. K31]
 gi|167349077|gb|ABZ71812.1| two component transcriptional regulator, LuxR family [Caulobacter
           sp. K31]
          Length = 222

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 1/141 (0%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           TEL     H   + +        R   L        I  +      +      + +  +L
Sbjct: 81  TELLIFTMHDSEQLVREVLSAGARGFVLKSASTDNIIAAVASLLNHKPYFCPGITDT-VL 139

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
             Y +    +          LT RE+  +  ++E +++  IA +L IS  TV ++  +IM
Sbjct: 140 RGYLSPGGHALGELIEGAETLTTRELLIVQLLAESRSNKVIASMLDISVKTVESHRGNIM 199

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    + +  + YA+RN ++
Sbjct: 200 RKLGAHSLADIVRYAIRNKLI 220


>gi|307726840|ref|YP_003910053.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587365|gb|ADN60762.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 223

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   V     +      G    Y   T D   +   ++        I  +   ++  
Sbjct: 81  ARVLMLTVSEDANDLAAALRGGARGYLLKTVDSDAMTTAIVRTMAGESAISPEMTGKLVS 140

Query: 165 LAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                 N  K  +    ++   +L+ RE E L  I++G+T+ EIA  L I+  TV  ++ 
Sbjct: 141 AFNALQNGVKVDEGRPEQNPIRDLSVREAEILEHIAQGRTNKEIARALNIAEATVKIHVQ 200

Query: 223 SIMRKTATKTRSG 235
            I+RK    +R  
Sbjct: 201 HILRKLKLSSRVQ 213


>gi|223940236|ref|ZP_03632096.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891123|gb|EEF57624.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 222

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L+A      F       GK+  L+ RE E L  +S+G    EIA +LG++  TV  +  
Sbjct: 147 SLIARKIVQHFHHQPSRSGKEHPLSVREREVLELLSKGLPYKEIADMLGVNIETVRKHCH 206

Query: 223 SIMRKTATKTRSGAIA 238
           +I  K    +R+ A+ 
Sbjct: 207 NIYEKLQVSSRTEAVV 222


>gi|182437835|ref|YP_001825554.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778470|ref|ZP_08237735.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466351|dbj|BAG20871.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658803|gb|EGE43649.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 214

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           LF   R   + R      +A+      +S          LT RE + L  +S+G  + +I
Sbjct: 120 LFAAIRSAAQGRTTLSAPVASRVMARMRSP------RPGLTDRERDILAQLSQGLGNRDI 173

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++  I  K    TR+GA++ A    ++
Sbjct: 174 ARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLL 213


>gi|94969375|ref|YP_591423.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551425|gb|ABF41349.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 219

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
               T RE E L  +  G+++ EI   LGI   TV  ++A +MRK   + R     +A+ 
Sbjct: 152 RVTFTDREKEVLELLVAGRSNKEIGSALGIEERTVKAHVAKLMRKVGVQNRIALSVHAIT 211

Query: 243 NNIV 246
           +++V
Sbjct: 212 HSLV 215


>gi|297571832|ref|YP_003697606.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932179|gb|ADH92987.1| two component transcriptional regulator, LuxR family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 222

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 11/144 (7%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y +   +V  +   +  +                 L
Sbjct: 85  RFLALSVSDAANDVVAVIRAGARGYVTKAVNVDELVEAIKRVAGGDAAFSP-------RL 137

Query: 166 AAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           A +  + F S      +  E    L+ RE E +  I+ G T  E A  L IS  TV  ++
Sbjct: 138 AGFVLDAFGSQTTDIAERDEELDRLSEREQEVMRLIARGYTYRETATELFISIKTVETHV 197

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
           ++++RK     R     +A    I
Sbjct: 198 SAVLRKLQLSNRHELSRWAALRGI 221


>gi|271961856|ref|YP_003336052.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505031|gb|ACZ83309.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 214

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  I++G T+ E+A  L IS  TV +++  I  K     R+ A+A A R  
Sbjct: 147 PLSARELEVLELIAQGTTNREVAARLFISEATVKSHLLHIYTKLGVNDRAAAVAVAFRRG 206

Query: 245 IV 246
           ++
Sbjct: 207 LL 208


>gi|190576052|ref|YP_001973897.1| putative LuxR family two-component response regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190013974|emb|CAQ47614.1| putative LuxR family two-component response regulator
           [Stenotrophomonas maltophilia K279a]
          Length = 212

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 74/224 (33%), Gaps = 26/224 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLV 87
             R+   D        + AL + +G    L         D    Q++D +V SD     +
Sbjct: 5   AIRVALADDQALVRAGLRALLQGLGVDVALEAEEGQALLDALSTQRVD-VVLSDIRMPGM 63

Query: 88  RCM-ALSEKDKYYNVLQRPTELF----CPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + A+ +     +               +              D     L   + R+  
Sbjct: 64  DGIEAVRQLRARGDATPWLLLTTFDESDLLLRASEAGAQGFLLKDAAPADLREAIERVAA 123

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G  LL P     +R R                 +            REV  L  ++ G +
Sbjct: 124 GETLLLPVSTEPVRAR---------------YRFHDEAPPTDTFGEREVAILRLLAGGYS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+   I+
Sbjct: 169 NKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 212


>gi|254228708|ref|ZP_04922131.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262396570|ref|YP_003288423.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
 gi|151938655|gb|EDN57490.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262340164|gb|ACY53958.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
          Length = 222

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + +T++S G ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A  N
Sbjct: 157 LTKREKQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIEVKNRVQALIWAKEN 214


>gi|302327479|gb|ADL26680.1| transcriptional regulator, LuxR family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 450

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ELT R+ E L+ + +G T+ EI   LGIS NTV  ++A+I +      R  A++
Sbjct: 9   ELTPRQKEILSLLRKGLTNAEICRTLGISANTVKVHLANIYKILEVTNRIEAVS 62


>gi|229014521|ref|ZP_04171639.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229136171|ref|ZP_04264924.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229170061|ref|ZP_04297752.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613408|gb|EEK70542.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228647330|gb|EEL03412.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228746871|gb|EEL96756.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 189

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA +L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|77359651|ref|YP_339226.1| regulator in two-component regulatory system; LuxR
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874562|emb|CAI85783.1| putative regulator in two-component regulatory system ; LuxR family
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 216

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT ++   L ++ EG  + +IA  L IS  TV  +I +I RK     R+ A+  A +  +
Sbjct: 151 LTPQQYRVLQYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQAVLIAAKLQL 210


>gi|326443131|ref|ZP_08217865.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 324

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 31/54 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           EL+ RE E +  I+ G T+ EIA    IS+ TV N+I  I  K  T +R  AIA
Sbjct: 258 ELSRREAEVMELIAAGLTNQEIAAACFISQKTVKNHINRIFAKLNTGSRGEAIA 311


>gi|326381846|ref|ZP_08203539.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199272|gb|EGD56453.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 210

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E +  +  G T+ EIA  L IS  TV +++  I  K    +RS  +A A +  +
Sbjct: 149 LTARELEVVVLLDAGLTNREIAKRLFISEATVKSHLVHIFDKLDVTSRSKVVATARQRGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|302525609|ref|ZP_07277951.1| predicted protein [Streptomyces sp. AA4]
 gi|302434504|gb|EFL06320.1| predicted protein [Streptomyces sp. AA4]
          Length = 1006

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 151  GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              + LRD + ++   A  +    +   V    D  LT RE + L  ++ G+T+ ++   L
Sbjct: 908  DAVPLRDAVRDLAHRARVELAGVEVPVVRPQVD-PLTDRERDVLERVALGRTNRQVGEEL 966

Query: 211  GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IS  TV+ +++ +M K     R+ A+A A    ++
Sbjct: 967  YISEKTVSVHLSRVMAKLGASRRAEAVAIAYDRGLL 1002


>gi|283787837|ref|YP_003367702.1| transcriptional regulator [Citrobacter rodentium ICC168]
 gi|282951291|emb|CBG90987.1| transcriptional regulator [Citrobacter rodentium ICC168]
          Length = 199

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +    L   +    P+     +  D   CS  +    ++  ++ + P+     + +L   
Sbjct: 59  EFCRWLLQTLSERFPKVKALISATD---CSKKWLHEMVQYNVLAVVPRDSEPEKFKLALN 115

Query: 163 GL---LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            +   +    A    +    +     L+ R+ E LT ++ G+++ EI   L IS  TV  
Sbjct: 116 SVAMGMLFLPAEWLTTPQPEFRDINTLSARQREILTMLAAGESNKEIGRALNISTGTVKA 175

Query: 220 YIASIMRKTATKTRSGAI 237
           ++ S+ R+   K R+ A 
Sbjct: 176 HLESLYRRLDVKNRTQAA 193


>gi|206562003|ref|YP_002232766.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198038043|emb|CAR53989.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 921

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L ++      Q     +     G    L+ REVE L +++ G ++ EIA  L ++  T+ 
Sbjct: 827 LRDLARAFDGQRQSNATPATRQGGPGNLSAREVEILDYVARGLSNKEIARALRVAPETIK 886

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ ++  K    +R  A+    R+ +
Sbjct: 887 WHLKNVFEKLNVTSRIQAV----RSGL 909


>gi|302544547|ref|ZP_07296889.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462165|gb|EFL25258.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 222

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  + EG  + +IA  +G++ +TV +++ +++ K     R  A   A R  +
Sbjct: 152 LTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRAGL 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|284040679|ref|YP_003390609.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819972|gb|ADB41810.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 219

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H L + ++     D     +   V ++    + L      + +  L ++      +  
Sbjct: 92  VLHLLEKGVSGYLLKDAEAGEVEKAVRKVMDEGVYL---NEFVSKAMLRKM----TNKTT 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + K  +  +     L+ RE E L  I EG ++ EI+  + +S  TV  +   I+ KT TK
Sbjct: 145 ITKPVNAFYNSKILLSEREKEVLMLICEGLSTLEISEKIFLSPRTVEGHRLRILEKTGTK 204

Query: 232 TRSGAIAYAVRNNIV 246
             +G +AYA +N++V
Sbjct: 205 NTAGMVAYAFKNSLV 219


>gi|189466603|ref|ZP_03015388.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM
           17393]
 gi|189434867|gb|EDV03852.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM
           17393]
          Length = 275

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           KD  LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  YA+
Sbjct: 204 KDDLLTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLGVNNAHEATKYAM 263

Query: 242 RNNIV 246
           +  IV
Sbjct: 264 KAGIV 268


>gi|297160587|gb|ADI10299.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 237

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   L    +     D R   L   +  +  G  LL P     L  R+  I       A 
Sbjct: 102 IVEALRAGASGFLVKDTRPADLLDGIRTVAAGESLLSPGPTARLIARMLRIPAAPPPAAL 161

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                          + RE + LT ++ G  + EIA  LG+S  T   +++ IM K   +
Sbjct: 162 AAAGLGAL-------SDRERQVLTLVARGLNNAEIAEALGLSPLTAKTHVSRIMGKLDAR 214

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A    +V
Sbjct: 215 DRAQLVIAAYECGLV 229


>gi|296136908|ref|YP_003644150.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
 gi|294341079|emb|CAZ89476.1| putative Nitrate/nitrite response regulator protein narL [Thiomonas
           sp. 3As]
 gi|295797030|gb|ADG31820.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
          Length = 225

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 6/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR +   E  +      R   L   V     +         + Y   T +   +  G+  
Sbjct: 63  VRGIDAVESLRQAAPASRV--LMLTVSEEAADLGAALRAGASGYLLKTCETDELIGGIQR 120

Query: 147 LFPKGRIILRDRLWEIG--LLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKT 202
                 +I  D   ++    +A    +  K         +   L+ RE +    I+ G +
Sbjct: 121 ALRGEVVIGADMTAKLAQAFIAPETTDSAKEALPANAQSEKTPLSPRERQIAAAIARGAS 180

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L I+  TV  ++ SI+RK    +R     YA  + +
Sbjct: 181 NKVIARELDIAETTVKVHVQSILRKLDLSSRVQIAVYASEHGL 223


>gi|227535294|ref|ZP_03965343.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187028|gb|EEI67095.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 202

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   +   LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A
Sbjct: 132 NMVTAESNPLTDRELAVLAAVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEA 191

Query: 237 IAYAVRNN 244
           +  A +N 
Sbjct: 192 VQMAKKNK 199


>gi|86359968|ref|YP_471858.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284070|gb|ABC93131.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 264

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 71/198 (35%), Gaps = 20/198 (10%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           +Y     +   R D  Q+  L +     W +D          D    + +  +E   PV 
Sbjct: 69  DYWFDRGYF--RIDPVQQVALRTSAPFFWNYD---------PDADTLIRRFMSEDTAPVT 117

Query: 114 HTLPE-----NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
             L E      +T P  M     +    +   R           I   + L  +    AY
Sbjct: 118 RYLSERDMSTGVTVPVHMPRGDYATVTGIRFGRNSDFERHALRYIADFNLLAHVFHETAY 177

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
              +F   D   G    LT RE ECL   +EG ++ EI+ I+  S  TV  ++ +  +K 
Sbjct: 178 A--LFDRKDKSVG--IRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKL 233

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + R+ A+  A    ++
Sbjct: 234 GARNRTQAVVRATHYRLL 251


>gi|294814752|ref|ZP_06773395.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294327351|gb|EFG08994.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 430

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 31/54 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           EL+ RE E +  I+ G T+ EIA    IS+ TV N+I  I  K  T +R  AIA
Sbjct: 364 ELSRREAEVMELIAAGLTNQEIAAACFISQKTVKNHINRIFAKLNTGSRGEAIA 417


>gi|291455100|ref|ZP_06594490.1| response regulator [Streptomyces albus J1074]
 gi|291358049|gb|EFE84951.1| response regulator [Streptomyces albus J1074]
          Length = 222

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             R+   ++        +  D L    LL+        +     G    LT REV+ +  
Sbjct: 115 ARRLVSAVLAASRGDGDLPADLLG--SLLSQVGTLHRGAVGQQGGPSLGLTPREVDVVRL 172

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+EG  + EIA  L  S  TV N I  +  +   + R+ A+A+A+R   +
Sbjct: 173 IAEGLDTGEIAGKLSYSERTVKNVIHGVTTRLHLRNRAHAVAFALREGYI 222


>gi|284047162|ref|YP_003397502.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951383|gb|ADB54127.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 228

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I+ G    EI   L IS  TV +++++++RK    +R     +A +  
Sbjct: 167 QLTAREQDVLLLIARGYMYKEIGARLHISVKTVESHVSNVLRKLQLSSRHELTRWAAQRR 226

Query: 245 IV 246
           ++
Sbjct: 227 MI 228


>gi|191638216|ref|YP_001987382.1| Response regulator [Lactobacillus casei BL23]
 gi|239631678|ref|ZP_04674709.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066277|ref|YP_003788300.1| CitB family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|190712518|emb|CAQ66524.1| Response regulator [Lactobacillus casei BL23]
 gi|239526143|gb|EEQ65144.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438684|gb|ADK18450.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382247|gb|AEA53723.1| Two component transcriptional regulator, LuxR family [Lactobacillus
           casei LC2W]
 gi|327385444|gb|AEA56918.1| Two component transcriptional regulator, LuxR family [Lactobacillus
           casei BD-II]
          Length = 202

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   +   LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A
Sbjct: 132 NMVTAESNPLTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEA 191

Query: 237 IAYAVRNN 244
           +  A +N 
Sbjct: 192 VQMAKKNK 199


>gi|182435802|ref|YP_001823521.1| LuxR family transcriptional regulator [Streptomyces griseus subsp.
            griseus NBRC 13350]
 gi|178464318|dbj|BAG18838.1| putative LuxR-family transcriptional regulator [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1079

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 184  FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            F LT RE +    ++ G T+  IA  L IS  T + ++++I+ K    +R  A A A R 
Sbjct: 1014 FGLTPREQDVHRLVAAGHTNRRIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRL 1073

Query: 244  NI 245
             +
Sbjct: 1074 RL 1075


>gi|158316741|ref|YP_001509249.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112146|gb|ABW14343.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 231

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 14/130 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +            R  +L   V ++  G  LL P               + +     
Sbjct: 113 FTAIMAGAAGYVLKQIRGTALVDAVRQVAAGQSLLDP--------------AVTSRVLFR 158

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +   V   +   LT +E   L  I+EG T+ +IA  + ++  TV NY++S++ K   ++
Sbjct: 159 LREGPVEDERLAGLTDQERRILALIAEGLTNRQIAARMFLAEKTVKNYVSSMLSKLGMES 218

Query: 233 RSGAIAYAVR 242
           R+ A  +A +
Sbjct: 219 RTQAAVFATK 228


>gi|56477577|ref|YP_159166.1| putative two-component response regulator [Aromatoleum aromaticum
           EbN1]
 gi|56313620|emb|CAI08265.1| putative two-component response regulator [Aromatoleum aromaticum
           EbN1]
          Length = 208

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K       + F LT  +   +  +++GK++ EIA +LG+S  TV  ++++I R     +R
Sbjct: 135 KRSGAPASERFGLTAGQTRVMELLAQGKSNREIADLLGLSEGTVKVHMSAIFRALHVSSR 194

Query: 234 SGAIAYAVRNN 244
           + A+    R+ 
Sbjct: 195 AQALIVIARHG 205


>gi|116494716|ref|YP_806450.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116104866|gb|ABJ70008.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 202

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   +   LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A
Sbjct: 132 NMVTAESNPLTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEA 191

Query: 237 IAYAVRNN 244
           +  A +N 
Sbjct: 192 VQMAKKNK 199


>gi|152966492|ref|YP_001362276.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151361009|gb|ABS04012.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 242

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 16/168 (9%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150
           E  +     +R   +   V  T   +      M    + + S   D   I   +  +   
Sbjct: 70  EVLRRLRAQERFAAVRVVVLTTFDGDDEVVQAMAAGADGFLSKASDPDDILQAITSVASG 129

Query: 151 GRIILRDRLWEIGL------LAAYQANMFKSYDVH-------WGKDFELTGREVECLTWI 197
              + +  L  +         A  +A    +             +   LT RE + +  +
Sbjct: 130 DIALSQRALRAVVAGLPTPTPADDRAQRTGAGGEGAVEVARLRARVELLTARERDVVVAV 189

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G  + +I   L IS  TV  +++  M K   + R+  +A A R  I
Sbjct: 190 ARGLDNTQIGEELFISPLTVKTHVSRAMTKLRVRDRAQLVAIAYRAGI 237


>gi|326776427|ref|ZP_08235692.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
            XylebKG-1]
 gi|326656760|gb|EGE41606.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1079

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 184  FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            F LT RE +    ++ G T+  IA  L IS  T + ++++I+ K    +R  A A A R 
Sbjct: 1014 FGLTPREQDVHRLVAAGHTNRRIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAHRL 1073

Query: 244  NI 245
             +
Sbjct: 1074 RL 1075


>gi|317505003|ref|ZP_07962951.1| transcriptional regulator [Prevotella salivae DSM 15606]
 gi|315663885|gb|EFV03604.1| transcriptional regulator [Prevotella salivae DSM 15606]
          Length = 318

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 12/221 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDL 86
           R +L+  +   D    + +++Y    Y    H  +       + EQ L  +V S+     
Sbjct: 100 RRELVEALDERDSLAQFILKLYDENAYEIMKHMRYEEKTVFPYVEQLLKGVVMSN----- 154

Query: 87  VRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                ++   +++  +++   EL   +   LP +      +      + ++         
Sbjct: 155 ---YDINTFSQHHRQVEQRWLELKSIIIKYLPSDELHNNLLTATLYDI-YNSESWLNQHS 210

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++  +  I    RL +         N+ K        D +L+ RE + +  + +G ++ E
Sbjct: 211 MVEDQIFIPAIKRLEKSLNQQGVTLNISKMISPSTTGDDQLSQREKDIIIGVVQGMSNKE 270

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS NTV  +  +I RK    + +G   YA+ N++V
Sbjct: 271 IAEHLYISVNTVITHRRNIARKLQIHSPAGLTIYAIVNHLV 311


>gi|260591672|ref|ZP_05857130.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
 gi|260536472|gb|EEX19089.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
          Length = 204

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV
Sbjct: 135 KNKILSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAV 194

Query: 242 RNNIV 246
            +  V
Sbjct: 195 MHGYV 199


>gi|239820081|ref|YP_002947266.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
 gi|239804934|gb|ACS22000.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 206

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           Y     K+   H       T RE + L ++ +G  +  IA  L IS NTV  ++A I  K
Sbjct: 126 YLCKGTKALIRHGKPCVGFTAREEDVLRYLVKGDCNKGIARELDISANTVKAHVARICEK 185

Query: 228 TATKTRSGAIAYAVRNNIV 246
               +R+   A A +  +V
Sbjct: 186 LHVGSRAQVAAKATQRGLV 204


>gi|218258047|ref|ZP_03474480.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225811|gb|EEC98461.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii
           DSM 18315]
          Length = 202

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           D +  +L ++V+   +              D L     L           +        L
Sbjct: 78  DMKCFALLYNVSDPFLLRSYDDQISVYDSADELKHK--LERLNTEEVPPEEGESDDQQTL 135

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N ++
Sbjct: 136 SSREKEIVVCVVKGMTNREIADRLYLSTHTVITHRRNIARKLQVHSASGLTVYAIVNKLI 195


>gi|223937111|ref|ZP_03629018.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894133|gb|EEF60587.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 74/214 (34%), Gaps = 16/214 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R+  ++       ++  +         +    +    ++    +    P  ++  + 
Sbjct: 1   MKRRVAVVEDNQRLRRQLLQILSQFED---IECVGNYGSGEEALEQIPHKNPEVVLMDIK 57

Query: 92  LSEKDK--YYNVLQRPTELFCPVFHTLPENIT----PPAGMDNRYCSLTFDVARIRIGLM 145
           L +       + L++   L   +  T+ E+            N Y   +    R+  G+ 
Sbjct: 58  LPKMSGIECVHELKKIMPLVQIIIVTVYEDSECIFDAIKAGANGYLIKSGPPERLIEGIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +   G  +        G +A      F++     GK   L  RE + LT ++ G    E
Sbjct: 118 DIASGGSPMS-------GHIARKVVGYFRTLGPATGKAKPLAPREEQVLTLLASGYLYKE 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           I   LG+S  TV  Y+ +   K   ++R  A+A 
Sbjct: 171 IGAKLGLSVETVRTYVKNACTKMHVRSRIEAVAK 204


>gi|160947148|ref|ZP_02094315.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270]
 gi|158446282|gb|EDP23277.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270]
          Length = 199

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 76/196 (38%), Gaps = 18/196 (9%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ----- 103
           + AL+  +G S + +V      ++ ++     +    ++  + + E +     ++     
Sbjct: 13  LNALSTILGKSGYEIVLATTDSKKAIE-TYKKNKIDVVILDIRMKEVNGVDVAIEILDFD 71

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           +  ++         ++I            L  +VA +   +  +    +I+  +      
Sbjct: 72  KDAKIMLLTTFNDRDDIIRALNKGVLGVILKDNVASLIPAIESVSLGNKILDNE------ 125

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                  N+   ++        LT +E+E L  I++G ++ EI+  L +S  TV NYI+ 
Sbjct: 126 ------LNLKNLFNTTKKDFELLTQKEIEILEQIAKGLSNKEISEKLFLSEGTVRNYISG 179

Query: 224 IMRKTATKTRSGAIAY 239
           I+ K   + R+    Y
Sbjct: 180 ILEKLELRDRTQLAIY 195


>gi|315127425|ref|YP_004069428.1| regulator in two-component regulatory system; LuxR
           [Pseudoalteromonas sp. SM9913]
 gi|315015939|gb|ADT69277.1| regulator in two-component regulatory system; LuxR
           [Pseudoalteromonas sp. SM9913]
          Length = 216

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT ++   L ++ EG  + +IA  L IS  TV  +I +I RK     R+ A+  A +  +
Sbjct: 151 LTPQQYRVLQYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQAVLIAAKLQL 210


>gi|302387016|ref|YP_003822838.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
 gi|302197644|gb|ADL05215.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
          Length = 213

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 4/161 (2%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIGLM 145
            + + E D      ++  E+   V      +    A       +L +    +   R   +
Sbjct: 54  DIEMPELDG-LAFAEKLLEIQPEVMIAFITSWNQYAVQAFELNALDYVMKPIKEERFLKL 112

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                  I  +++L     + +       +       D  LTGRE + LT +++G T  E
Sbjct: 113 AEKIHTEINRKEQLSYAEQVLSLYGRQKVAPAADHMPDIPLTGRETQVLTLLAQGLTQRE 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S + +  ++ASI  K     +  A+  A  +NI+
Sbjct: 173 IAEELFLSVSCIKKHLASIYSKLNVNNKISAVQKARESNIL 213


>gi|271969982|ref|YP_003344178.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513157|gb|ACZ91435.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 215

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 11/129 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D     L   V     G  L+ P   + L   L + G  A  +A 
Sbjct: 89  VYGALRCGAAGFVLKDAGPILLVEAVRAAYSGDALISPTITLRLLRHLADRG--ARAKAR 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M             LT RE E +  I+ G+T+ EIA  L IS +TV  Y++ IM K   +
Sbjct: 147 MPAQ---------PLTARETEIVQAIARGRTNQEIADELFISLSTVKGYVSGIMAKLGVR 197

Query: 232 TRSGAIAYA 240
           +R   +A+A
Sbjct: 198 SRVKIVAWA 206


>gi|134098494|ref|YP_001104155.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003289|ref|ZP_06561262.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911117|emb|CAM01230.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 235

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     L   V  +  G  LL P+    L  R   +G+       
Sbjct: 95  VYAALRAGASGFLLKDAPPEELVRAVHTVAAGDALLAPRVTRRLLQRFASLGV------- 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   LT RE + L  +++G ++ EIA  LG++  TV +++  +M+K    
Sbjct: 148 -----RDAGTELSGLTDRERDVLLEVAKGGSNAEIARNLGLAELTVKSHLYHVMQKLHLN 202

Query: 232 TRSGAIAYAVRNNIV 246
           +R+  +  A    +V
Sbjct: 203 SRTQLVITAYETGLV 217


>gi|319401681|gb|EFV89890.1| transcriptional regulatory protein degU [Staphylococcus epidermidis
           FRI909]
          Length = 218

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 6/175 (3%)

Query: 78  VSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYC 131
           V    P  L+  +++   +        + +   E    +       E +        +  
Sbjct: 42  VLEHQPDVLILDLSMPPGESGLIATSKISESFPETKILILTMFDDEEYLFHVLKSGAKGY 101

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
            L        I  +    +G   +  +L    +      +              L+ RE+
Sbjct: 102 ILKNSPDEQLILAVRTVYQGETYVDMKLTTSLVNEFVNQSQTDEVSSSSDPFKILSKREL 161

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I++G  + +IA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 162 EILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLL 216


>gi|306828869|ref|ZP_07462061.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304429047|gb|EFM32135.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 199

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLNAGNRTEAANIATESG 197


>gi|320009389|gb|ADW04239.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 210

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE++ L  +S+G  + +IA  L IS  TV  ++  I  K    TR+GA++ 
Sbjct: 143 RSPRPTLTERELDILGQLSQGLGNRDIARALFISEATVKTHLGRIYEKLGVDTRAGAVSV 202

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 203 AKEQRLL 209


>gi|296130380|ref|YP_003637630.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022195|gb|ADG75431.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 217

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 72/215 (33%), Gaps = 16/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M       S   RM  + E  G    + V  DL        +V  D           +E 
Sbjct: 15  MFRAGVKASLDARMRVVGEAAGVDEAVQVVHDL-----QPPVVLLDVHLPGGDGGGGAEV 69

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
            +    +     L   V     + +         Y +   D   +   ++ +     +  
Sbjct: 70  VRRCVDVPSTRFLALSVSDAAEDVVAVIRVGARGYVTKAIDPTALSDAVVRVAGGDAVFS 129

Query: 156 RDRLWEIGLLAAYQANMF--KSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
                    LA +  + F   + DV  G D    L+ RE E +  I+ G T  E+A  L 
Sbjct: 130 P-------RLAGFVLDAFGAAAGDVATGDDELDRLSAREREVMRLIARGFTYREVAGELF 182

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  ++++++RK     R+    +A    ++
Sbjct: 183 ISIKTVETHVSAVLRKLQLSNRNELTRWAAARRLL 217


>gi|111017509|ref|YP_700481.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110817039|gb|ABG92323.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 430

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  ++ GK +  IA  LGIS++T+  ++AS++ K     R  A A  +R  I
Sbjct: 359 LNPRELEVLAHLAVGKRNRAIAEELGISQSTIKFHVASVLEKLDVANRGEAGAIGIRAGI 418


>gi|62199613|gb|AAX76904.1| EsrB [Edwardsiella tarda]
          Length = 214

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 15/169 (8%)

Query: 83  PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDV 137
           P  ++  + L   D       + +R +++   V     E       +     +  L    
Sbjct: 54  PDLVLLDLGLPGMDGVDVIRQLRRRWSDMRIVVVTASSEARRGSEAVAAGALAYVLKQSP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +  +  M     G+  +        L+A+              ++  LT RE + L  +
Sbjct: 114 QQTLLAAMQHASLGKTFVDPAPRLDSLVAS----------SDMAQEPPLTLRERQILKLV 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGK + +IA +L IS  TV  +  ++MRK      +    +A R  ++
Sbjct: 164 AEGKRNRDIAELLSISLKTVETHRLNLMRKLDAHNAAELSNWARRLGVL 212


>gi|34452032|gb|AAQ72483.1| DNA binding response regulator [Bacillus cereus]
          Length = 200

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNNIV 246
           A     +
Sbjct: 194 AEEKGWI 200


>gi|53717636|ref|YP_106110.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|53722543|ref|YP_111528.1| two-component response regulator [Burkholderia pseudomallei K96243]
 gi|76819257|ref|YP_335719.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|52212957|emb|CAH38995.1| putative two-component response regulator [Burkholderia
           pseudomallei K96243]
 gi|52423606|gb|AAU47176.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76583730|gb|ABA53204.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
          Length = 223

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 10/154 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A+ E  + +  L+              + I       + Y         I   +  +   
Sbjct: 71  AMGEILRAHPGLRFVVFTALGSEARAADAI---RFGASGYLLKWCSPDGIVQAIRRVMAG 127

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              I    L E  + +A       S         ELT RE + L  I++G  + EIA +L
Sbjct: 128 RVHIDPS-LDEARVASAAGGRTLASP------VDELTRREKQVLKLIADGMRNREIASLL 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IS  TV+ +   +M+K   +  +  I +A R  
Sbjct: 181 NISPKTVDCHRQRLMQKLGARNVATVIHWAYRYG 214


>gi|67641422|ref|ZP_00440201.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|126444300|ref|YP_001063145.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126447142|ref|YP_001077967.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126456927|ref|YP_001076095.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134281974|ref|ZP_01768680.1| BipB protein [Burkholderia pseudomallei 305]
 gi|166999878|ref|ZP_02265708.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167725537|ref|ZP_02408773.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167743182|ref|ZP_02415956.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167820355|ref|ZP_02452035.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167828726|ref|ZP_02460197.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167850181|ref|ZP_02475689.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167898791|ref|ZP_02486192.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167907119|ref|ZP_02494324.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167915473|ref|ZP_02502564.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167923317|ref|ZP_02510408.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217425144|ref|ZP_03456639.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226196039|ref|ZP_03791625.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507699|ref|ZP_04520414.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|242312836|ref|ZP_04811853.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254176376|ref|ZP_04883034.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254185184|ref|ZP_04891773.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|254186839|ref|ZP_04893355.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254204939|ref|ZP_04911292.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254263032|ref|ZP_04953897.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|254301472|ref|ZP_04968916.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|126223791|gb|ABN87296.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126230695|gb|ABN94108.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|126239996|gb|ABO03108.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134246503|gb|EBA46591.1| BipB protein [Burkholderia pseudomallei 305]
 gi|147754525|gb|EDK61589.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|157811119|gb|EDO88289.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157934523|gb|EDO90193.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697418|gb|EDP87388.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|184215776|gb|EDU12757.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|217391749|gb|EEC31776.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225931932|gb|EEH27933.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999904|gb|EEP49328.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|238522359|gb|EEP85804.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242136075|gb|EES22478.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|243064182|gb|EES46368.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254214034|gb|EET03419.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 214

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 10/154 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A+ E  + +  L+              + I       + Y         I   +  +   
Sbjct: 62  AMGEILRAHPGLRFVVFTALGSEARAADAI---RFGASGYLLKWCSPDGIVQAIRRVMAG 118

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              I    L E  + +A       S         ELT RE + L  I++G  + EIA +L
Sbjct: 119 RVHIDPS-LDEARVASAAGGRTLASP------VDELTRREKQVLKLIADGMRNREIASLL 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IS  TV+ +   +M+K   +  +  I +A R  
Sbjct: 172 NISPKTVDCHRQRLMQKLGARNVATVIHWAYRYG 205


>gi|218129935|ref|ZP_03458739.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697]
 gi|217988045|gb|EEC54370.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697]
          Length = 217

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A    N  +  D   G+  ELT RE++ L  ISEGK + EIA  L +S NTV+ +   ++
Sbjct: 134 AEQVRNQMRRSD--EGRREELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHLL 191

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   K  +  I  A+   I+
Sbjct: 192 DKLDAKNVADLIMTAISRGII 212


>gi|167588375|ref|ZP_02380763.1| transcriptional regulator FimZ [Burkholderia ubonensis Bu]
          Length = 169

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 16/177 (9%)

Query: 77  IVSSDWPFDL-VRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAG---MDNR 129
            +  + P +L +  + +   D    + +   E       +F  + E I          N 
Sbjct: 2   TLLREHPIELAILDIEIPGGDGLRLLKRIRAEGLKTRVLIFSAMDERIYSVRASKAGANG 61

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + S   D+A+I I +  +         +      + A Y     +S +   G    LT R
Sbjct: 62  FLSKRNDIAQILIAVKTILSGYLFFPAE-----AVSALYHDRTRQSANRTGG----LTDR 112

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+  L  ++ G ++ +I   L IS  TV+ Y ++I  K    +  G   YA RN ++
Sbjct: 113 ELTVLRGLARGSSNRQIGEDLCISNKTVSTYKSNIFEKLGVSSVVGLADYARRNGLI 169


>gi|104779522|ref|YP_606020.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95108509|emb|CAK13203.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 217

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 79/218 (36%), Gaps = 14/218 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++  D +  +   + AL E       VG +   +    L ++ K D +V  D   +L  
Sbjct: 4   RILLADDSPLFRAGLRALLEQKKDFAVVGDTGDAMAAVSLAEKLKPDIVVL-DMSGELDS 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             AL E        +            +   +       + +      VA +   L+ L 
Sbjct: 63  QQALQELFIRAPASRVLMFSARSQLEHVLNCLQL---GAHGFLLKNATVAELEQALLTLR 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G+ +    L     +   QA               LT R++E L  I+ G+T+  IA 
Sbjct: 120 SGGQFLSSAVLP----MVIGQALRHSRKRTSAPPQAPLTKRQLEILRLIARGETTRSIAD 175

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LG+S  TV  + + IM +       G + +AVR  I+
Sbjct: 176 GLGLSVKTVEAHRSQIMHRLQIHDVPGLVLFAVREGII 213


>gi|89902142|ref|YP_524613.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89346879|gb|ABD71082.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 262

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G +  EIA + G+S +TV  +I ++  K +  ++S A+  A R  +
Sbjct: 198 LSPREQEVLALIARGFSYTEIARLQGLSVHTVQTHIKNLYGKLSVHSKSEAVFEATRMGL 257

Query: 246 V 246
           +
Sbjct: 258 L 258


>gi|319791419|ref|YP_004153059.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593882|gb|ADU34948.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS]
          Length = 482

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  IS G ++ E A +LGIS +TV  ++ +I RK    TR+ A   A+   +
Sbjct: 422 LSSREIEVLGRISLGDSNKEAARVLGISPSTVRAHLENIFRKLECTTRAAATLKALTLGL 481

Query: 246 V 246
           +
Sbjct: 482 L 482


>gi|302035963|ref|YP_003796285.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300604027|emb|CBK40359.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 218

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 4/197 (2%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
            M  L   V    F+++     +E+ L  +V    P  +V  + + +        +    
Sbjct: 23  GMRTLLNSV--PDFMVIGEASSKEEAL-PLVLHHTPDIVVLDLRVQDGTGIETAKEILAH 79

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L       L + +T    +          V +      LL     +       + G+   
Sbjct: 80  LPETRVLFLADALTDSTLLSAVATGAHGYVLQEAGAETLLHAMRSLTKGQSYLDPGVTRH 139

Query: 168 YQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             A + K  D    +   L + +E   L  I++GKT+ EIA  LG+S  TV NY+A++  
Sbjct: 140 TFAYLRKVADREPERGRHLLSPQERRLLPLIAQGKTNKEIAAELGLSDKTVKNYLANVYS 199

Query: 227 KTATKTRSGAIAYAVRN 243
           K     RS A A+ ++ 
Sbjct: 200 KLHLSRRSQAAAFYLKT 216


>gi|281415592|ref|ZP_06247334.1| RNA polymerase sigma factor, sigma-70 family protein [Micrococcus
           luteus NCTC 2665]
          Length = 193

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 10/154 (6%)

Query: 101 VLQRPTELFC--PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-- 156
           + +RP + F    V     + +         Y + T   A +    + +     +     
Sbjct: 38  LARRPAQRFLALSVSDAAEDVVAVIRAGARGYITKTASGAEVADAAVRVADGDAVFSPRL 97

Query: 157 -----DRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVIL 210
                D        +        S      +D + L+ RE E +  I+ G T  E  V L
Sbjct: 98  AGFVLDAFRGTAPASPPVPAAATSGAAAPDEDLDRLSAREREVMRLIARGYTYREAGVEL 157

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IS  TV  +++S++RK     R     +A R  
Sbjct: 158 FISDRTVETHVSSVLRKLQLSNRHELTRWAARRG 191


>gi|262275113|ref|ZP_06052924.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
 gi|262221676|gb|EEY72990.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
          Length = 222

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A     + + +    R+R     +      +  D +   G     + +  +  D  +  
Sbjct: 95  IAYGAVGFIAKSAPRERMRDAFEKILDGHVYLPADIIRAEG---EGETSQRRKEDPQFSP 151

Query: 183 DF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +    LT R++  L  +++G  + +IA  L IS  TV +++++I++K     R  A+ 
Sbjct: 152 EMLHTLTRRQLLVLKSMAQGAANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAVV 209


>gi|239996407|ref|ZP_04716931.1| two component LuxR family transcriptional regulator [Alteromonas
           macleodii ATCC 27126]
          Length = 219

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 11/172 (6%)

Query: 77  IVSSDWPFDLVR-CMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN-----ITPPAGMDNR 129
           ++  D  FDL+   + + E      +L+ R      PV     E      +   +     
Sbjct: 42  LLEQDAKFDLIMLDLNMPETCGLNGLLEIRNQHPNVPVVIISAETEKQNILQTISYGAVG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + S +  +  I   +  +F     +  + L         +  M     +   +   LT +
Sbjct: 102 FISKSSKIEEIATSIESIFEGNVCLPSEILRTPST----RTRMTNDNGISPEQIRSLTRK 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           E+  L ++++G  +  IA  L IS  TV ++++SI++K     R   +A A 
Sbjct: 158 ELTVLKYLTQGLANKVIAYELNISETTVKSHVSSILKKLGASNRVKVVASAA 209


>gi|166030393|ref|ZP_02233222.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC
           27755]
 gi|166029751|gb|EDR48508.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC
           27755]
          Length = 208

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +      V      E T RE+E L  ++ G ++  IA  L IS +TV N+I  ++ KT  
Sbjct: 130 DKVPQVKVGMATSHEFTEREMEVLRLMTTGASNAAIAEKLVISESTVKNHIHRMLEKTGC 189

Query: 231 KTRSGAIAYAVRNNI 245
           ++R+     A  + I
Sbjct: 190 ESRTELAIEARISGI 204


>gi|284041634|ref|YP_003391974.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945855|gb|ADB48599.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 213

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           ++    L     +           +   A     Y +       +R  ++ +   G +I 
Sbjct: 68  ERLRTELPSAKSIVMTATEKAEPLLDAIAAGAAGYLTKRTSGEELRQAILTVHGGGSVIA 127

Query: 156 RDRLWEIGLLAAY-QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                   LL AY +A+  ++ DV      +LT  E E L  +++G T  +IA  L +S 
Sbjct: 128 PQ--LAPHLLQAYSRASTGEAPDVRK----KLTATEHEVLRLVAQGMTDRQIAERLFVSP 181

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            TV N++A I  KT+ + RS    +AV +
Sbjct: 182 RTVQNHLARIREKTSMRRRSDLARWAVLH 210


>gi|89893631|ref|YP_517118.1| hypothetical protein DSY0885 [Desulfitobacterium hafniense Y51]
 gi|89333079|dbj|BAE82674.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 6/158 (3%)

Query: 90  MALSEKDKYYNVL-QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI-RIGLMLL 147
           +  S  +    +  + P      +     EN   P         L    A    I  + +
Sbjct: 69  LDFSGIEATIQIRKEWPEARILALTMHSEENYLLPFLDAGGCGYLHKSAADTDLIRAIRM 128

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             +G++ LR      GL              H G +  LT RE + L  ++ G TS EI 
Sbjct: 129 AAQGQVFLRPE----GLAVLTVQQKLNKKQKHCGGEPVLTERETQVLGMVARGYTSKEIG 184

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L I+ +TV+ Y   +++K    TR+  + YA+ ++I
Sbjct: 185 EKLYIAPSTVDTYRERLIKKLEFTTRAQLVDYAILHDI 222


>gi|108763554|ref|YP_631320.1| fruA protein [Myxococcus xanthus DK 1622]
 gi|30962571|dbj|BAC76753.1| DNA-binding protein [Myxococcus xanthus]
 gi|108467434|gb|ABF92619.1| fruA protein [Myxococcus xanthus DK 1622]
          Length = 229

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 2/108 (1%)

Query: 139 RIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           R  +G   +      ++R +RL+ + LL                    LT RE E L ++
Sbjct: 117 RAGLGTTAVASAINSLVRGERLFPVQLLRND-FEHPPVTSPTASVLLALTQREREVLAYV 175

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G  + +IA  L I+  TV +++  + RK   + R+     A    +
Sbjct: 176 AGGADNLKIAAHLQIAERTVKSHVTQLYRKLGAENRTQLALRACHLGV 223


>gi|325971781|ref|YP_004247972.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324027019|gb|ADY13778.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy]
          Length = 295

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 169 QANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +A + KS ++  G  +++ +T RE   +  IS+G T+ EIA  LGIS NTVNN++A+I  
Sbjct: 218 RAEVVKSKELVLGDLEEYHITEREFAVIQLISKGLTNKEIASQLGISANTVNNHVANIYG 277

Query: 227 KTATKTR 233
           KT  ++R
Sbjct: 278 KTQVRSR 284


>gi|138895707|ref|YP_001126160.1| two-component response regulator ComA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250961|ref|ZP_03149644.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
 gi|134267220|gb|ABO67415.1| Two-component response regulator ComA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209525|gb|EDY04301.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
          Length = 223

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V++      L+      +  + +  + LL   Q    K+  V   +   L+  E E L  
Sbjct: 101 VSKTATSEQLITAIRCALRDEAVIPVHLLRQLQLCEVKARMVENEEHVALSQLEQEILFE 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ +IA    IS+ +V  +++ I  K    +R  A+  A +  ++
Sbjct: 161 VANGLSNKDIAKKHYISQRSVERHLSRIFTKLHVSSRIEAVEKARQLGLI 210


>gi|328885899|emb|CCA59138.1| transcriptional regulator, LuxR family [Streptomyces venezuelae
           ATCC 10712]
          Length = 244

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 6/152 (3%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF----DVARIRIGLMLLFPKGRII 154
           Y +   P      V  T          ++    ++      D  R+   ++ +     ++
Sbjct: 95  YRLRHNPRTRTGLVVGTFESGDALQRAIECGVTAVLRRAEADQDRLLRLVLAIANGEGVL 154

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             D L +  LL    +    + D H      L  RE + L  +SEG  + EIA     S 
Sbjct: 155 PGDLLAK--LLTHVGSLQRAALDPHAASLSTLAPREADMLRLVSEGLDTAEIARKTSYSE 212

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV N +  ++ +   + R+ A+ YA+RN ++
Sbjct: 213 RTVKNVLHEVITRLQLRNRTHAVGYALRNGLI 244


>gi|310822190|ref|YP_003954548.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395262|gb|ADO72721.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
          Length = 236

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I  +RL+ + LL     +   +       +  LT RE E L +++ G  + +IA  L
Sbjct: 137 HGLIRGERLFPVQLLRNDFEHPPVATQPASVLN-ALTQREREVLGYVAGGADNLKIAAHL 195

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I+  TV +++  + RK   + R+     A    +
Sbjct: 196 QIAERTVKSHVTQLYRKLGAENRTQLALRACHLGV 230


>gi|229818904|ref|YP_002880430.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564817|gb|ACQ78668.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 218

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 4/142 (2%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             +  P  +       L E +        R   L      + +  +    +G  ++   +
Sbjct: 73  PGVTDPMAVVVITTFDLDEYVLGALRAGARGFLLKDAGPELLVRAIHAAAEGDALIAPNV 132

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               LLA +     ++  V       LTGRE E L  ++ G+T+ EIA  L +  +TV  
Sbjct: 133 TRR-LLATFAD---QAPAVPVQPIDPLTGREEEVLALVARGRTNAEIATELFVGLSTVKT 188

Query: 220 YIASIMRKTATKTRSGAIAYAV 241
           ++AS+M K   + R     +A 
Sbjct: 189 HVASLMTKLGARNRVEIAMWAY 210


>gi|194476794|ref|YP_002048973.1| possible transcriptional regulator [Paulinella chromatophora]
 gi|171191801|gb|ACB42763.1| possible transcriptional regulator [Paulinella chromatophora]
          Length = 90

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GREVE +  ++ G T+ EIA  L IS+ TV+N+I +I  KT    R   + +A+ + 
Sbjct: 13  NLSGREVELIELLATGLTNQEIATHLMISKRTVDNHICNIFTKTGVNNRIKLLNWAIDSG 72

Query: 245 IV 246
            +
Sbjct: 73  RI 74


>gi|163744256|ref|ZP_02151616.1| Transcriptional activator protein RaiR, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381074|gb|EDQ05483.1| Transcriptional activator protein RaiR, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 239

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 21/237 (8%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P    +  R+   D   +      AL ++ G  H +    D   EQ         +    
Sbjct: 5   PHLEQIWERLAQADGQAALGQVSEALRDHYGILHVVYHWIDTAGEQYG----CGTYGALW 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA----------GMDNRYCSLTFD 136
                     +   V+      F PV     +  +  A          G+ N+  S+   
Sbjct: 61  SDRYHEHNYLRIDPVVSGCYRRFEPVDWKDLDWTSRAARKFRRDASDHGVGNQGFSVPVR 120

Query: 137 VARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANMFK---SYDVHWGKDFELTGR 189
               +  L          L      R     + AA+  N      + +   G    L+ R
Sbjct: 121 GPHGQFALFTTNHSCTDALWSSFTARHRRDLIWAAHCFNEKALALAPNRRPGAVQALSPR 180

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EV+ +T ++ G    ++A  L IS +T+  Y+ S   K      + A+A A+   ++
Sbjct: 181 EVDAMTLLAVGYNRAQVAQRLSISEHTLRAYVESARFKLGASNTTHAVARALSRGLI 237


>gi|115375050|ref|ZP_01462320.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367978|gb|EAU66943.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I  +RL+ + LL     +   +       +  LT RE E L +++ G  + +IA  L
Sbjct: 130 HGLIRGERLFPVQLLRNDFEHPPVATQPASVLN-ALTQREREVLGYVAGGADNLKIAAHL 188

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I+  TV +++  + RK   + R+     A    +
Sbjct: 189 QIAERTVKSHVTQLYRKLGAENRTQLALRACHLGV 223


>gi|94971090|ref|YP_593138.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553140|gb|ABF43064.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 213

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 5/179 (2%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMD 127
             + L    S   P  +V  + +   +      Q  + +     VF T+ E   P    +
Sbjct: 36  DGRALVHSASQLQPNVVVIDINMPLLNGLDAGQQIKKASPAVQLVFLTMSE--EPELVKE 93

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
              C  +  V +      L+     ++     +    LA   A            D  LT
Sbjct: 94  AFRCGASAYVVKTGAAAELVTAVQEVLS-GHTYLSPSLARESAASPTRPGFGIDSDVPLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ E L  ++EG++  E+  IL ++  TV  +   IM+    +  +  + YA++ +I+
Sbjct: 153 ERQREVLQLLAEGRSMKEVGAILKLTTRTVAFHKYRIMKAVHARNNAELVRYAIKKHIL 211


>gi|84684208|ref|ZP_01012110.1| two-component response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667961|gb|EAQ14429.1| two-component response regulator [Rhodobacterales bacterium
           HTCC2654]
          Length = 215

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 7/134 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +       ++  +   + Y        ++   L  +      +          +A     
Sbjct: 83  IMGDDVSVVSALSAGADGYLQKDQTQDQMVAQLRQISHGIPALSP-------AVARRIMG 135

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F         D +LT RE + L  IS G  + E+A  LG++ +TV  YI +I RK    
Sbjct: 136 HFSRTGPVANDDGKLTDRETDVLALISRGLRNAEVARELGLAESTVAGYIKTIYRKLGIS 195

Query: 232 TRSGAIAYAVRNNI 245
           +R+ A  +A R  +
Sbjct: 196 SRAEAAWHATRLGL 209


>gi|113460191|ref|YP_718248.1| nitrate/nitrite response regulator protein [Haemophilus somnus
           129PT]
 gi|170718227|ref|YP_001785249.1| LuxR family transcriptional regulator [Haemophilus somnus 2336]
 gi|112822234|gb|ABI24323.1| nitrate/nitrite response regulator protein [Haemophilus somnus
           129PT]
 gi|168826356|gb|ACA31727.1| two component transcriptional regulator, LuxR family [Haemophilus
           somnus 2336]
          Length = 209

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 17/200 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL-SEKDKYYNVLQRPTELFCPVFHTLPENI 120
           LL+       + +  ++  D  F+++      SE       L+    +       L    
Sbjct: 8   LLIDDHPLMRRGIKQLLELDESFEVIGDAGSGSEGVNLALQLEPDLIILDLNMKGLSGLD 67

Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------ 164
           T       G+D R   LT   A+  I  ++       +L+D   +  L            
Sbjct: 68  TLKALRTEGIDARILILTVSDAKNDIFTLIDAGADGYLLKDTEPDTLLSQIKRVTQGEVI 127

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+    N+           + LT RE+  L  I+ G  + +IA  L IS  TV  +I ++
Sbjct: 128 LSESIKNLLLERQHKDDPIYSLTDREMNVLALIATGLANKQIAGQLFISEETVKVHIRNL 187

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           +RK    +R  A     ++ 
Sbjct: 188 LRKLNVHSRVAATVLYFQHK 207


>gi|317055507|ref|YP_004103974.1| LuxR family two component transcriptional regulator [Ruminococcus
           albus 7]
 gi|315447776|gb|ADU21340.1| two component transcriptional regulator, LuxR family [Ruminococcus
           albus 7]
          Length = 209

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 35/56 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + ++ +E E L  ++EGK++ EI+  L +S  TV NYI+S++ K + + R+    +
Sbjct: 146 YGISEKEKEILELVAEGKSNKEISAELFLSEGTVRNYISSLLDKLSLRDRTQLAVF 201


>gi|291514716|emb|CBK63926.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Alistipes shahii WAL 8301]
          Length = 298

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 22/220 (10%)

Query: 49  MYALTEYVGASH--FLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMA--LSEKDKYYNVL 102
           + +LT+Y+  SH  FL  R    + + ++++    SD  F ++R      +E  ++ +  
Sbjct: 65  VRSLTDYLHNSHGYFLDFRLPAIRRKLIEAVDCALSDVSFAIMRFFDEYAAEVQRHMSYE 124

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNR-YCSLTFDVARIRIGLMLLFPKGRI-ILRDRLW 160
           ++    +     +  +N      +  R +  +   +  ++  ++  +P G    L   L+
Sbjct: 125 EQTVFPYVESLLSGEKNTAYSIDIFRRQHDQIDIKLRELKNIIIKYYPSGSSNELNGVLF 184

Query: 161 EI----GLLAAYQA----------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +I      LA++ A              +      K   L+ RE E +  + +G T+ +I
Sbjct: 185 DIFNCEHELASHNAVEDELFIPAVERLAAAGPRTVKPEPLSAREKEIIVCVVKGMTNKQI 244

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS +TV  +  +I  K    + +G   YA+ N +V
Sbjct: 245 ADALCISAHTVITHRRNIAAKLQIHSAAGLTIYAIVNKLV 284


>gi|302528147|ref|ZP_07280489.1| predicted protein [Streptomyces sp. AA4]
 gi|302437042|gb|EFL08858.1| predicted protein [Streptomyces sp. AA4]
          Length = 240

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  IS G T+ EIA    +S  TV +++ ++ RK   + R+ A+A     N
Sbjct: 168 ELTLRETQVLGLISIGLTNSEIAEAQSVSAETVRSHVKNVYRKLGARNRAHAVALGHLEN 227

Query: 245 IV 246
           ++
Sbjct: 228 LI 229


>gi|296128509|ref|YP_003635759.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296020324|gb|ADG73560.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 211

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 149 PKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSD 204
           P  R++   RL   G  LL    A    +            +T RE E L  +++G ++ 
Sbjct: 107 PAARLVEGVRLVAAGALLLGPRVARRLAADGPRRPVPGLDRVTAREREVLAAVAQGLSNA 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A  LGI   TV  +++ ++RK   + R+  +  A    +V
Sbjct: 167 EVAARLGIGEQTVKTHVSELLRKLGRRDRAQLVVAAYEGGVV 208


>gi|119717886|ref|YP_924851.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119538547|gb|ABL83164.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 215

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREV 191
             D+  +    + L  +  +   +      L    QA++    D     G+D  LT RE 
Sbjct: 89  ALDLGAVASISVGLHAEELVAAIEAFAAGHLQDGSQADLDNQADRRRQLGRDVNLTPREQ 148

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + L  I  G +++E+A  L +S NTV + I S+ RK    +R+ A+A+ V + 
Sbjct: 149 DVLGLIVAGCSNEELAAELYLSINTVKSLIRSVYRKLEVTSRAQAVAWGVDHG 201


>gi|330503565|ref|YP_004380434.1| regulatory protein LuxR [Pseudomonas mendocina NK-01]
 gi|328917851|gb|AEB58682.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01]
          Length = 860

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAV 208
           ++   +R   +        + +   +     D     LT RE E +   ++G +++EI  
Sbjct: 761 QLESAERQPALQAFIRSLLSAWPGQEARQALDVLEEGLTEREREVVCLAAKGMSNEEIGQ 820

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L ++  TV  ++ +I  K   + R+ AI  A   +++
Sbjct: 821 QLSLALGTVKWHLHNIYEKLKVRNRTQAIRRARELSLL 858


>gi|325860330|ref|ZP_08173452.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
 gi|325482209|gb|EGC85220.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
          Length = 214

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT  E E L  I+ G T+ EIA     S +TVN +  +I RK        A+ YA+R+
Sbjct: 145 VKLTKTEAEILKEIALGLTTREIAEKRFSSFHTVNTHRKNIFRKLGVNNVHEAMRYAMRS 204

Query: 244 NIV 246
            +V
Sbjct: 205 GLV 207


>gi|288958203|ref|YP_003448544.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910511|dbj|BAI72000.1| two-component response regulator [Azospirillum sp. B510]
          Length = 254

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REV+ L  +  G ++  IA  L I+  TV  ++ S++RK     R+ A  +A+ N I
Sbjct: 179 LSQREVQILRCLLNGDSNKMIANHLNITEATVKVHLKSLLRKINASNRTQAAIWALNNGI 238


>gi|302546395|ref|ZP_07298737.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464013|gb|EFL27106.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 223

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G ++ EIA  L +   TV  ++A+++ K   + R+ A+  A     
Sbjct: 160 LSEREADVLRLMAAGLSNAEIAARLTVGPATVKTHVAAVLGKLGVRDRTQAVIAAYECGF 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|184201100|ref|YP_001855307.1| putative two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581330|dbj|BAG29801.1| putative two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 217

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 21/196 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE--------L 108
           G +H +L R       +LDS +  +   D+V   A +   +    + R           +
Sbjct: 22  GVAH-MLRRHPRLDVVELDSGLLPEQDVDVVLYDAFAATGRGTRDVMRLLGEARFRRVVM 80

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
           +         +     GMD  + S       +   L+ +    R++  + + E       
Sbjct: 81  YTWNVSAQRVDEALAMGMD-GFLSKELSAQELGDALVRVHEGERVVEPEPVRE------- 132

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             ++        G+   L+ RE E +  I++G T+DEIA    +S N+V +YI S  RK 
Sbjct: 133 --DVTPPD--WPGRRTGLSAREAEVIALITQGFTNDEIARNCYLSINSVKSYIRSAYRKM 188

Query: 229 ATKTRSGAIAYAVRNN 244
             + RS A+ + V++ 
Sbjct: 189 GVERRSQAVLWGVQHG 204


>gi|134101280|ref|YP_001106941.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133913903|emb|CAM04016.1| protein kinase/transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 766

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +G  + ++R     L     A            +  LT RE E    ++EGK++ EIA  
Sbjct: 670 EGERMDQERTVAYALGETSAARAPARAGTASEGELALTRREREVAALVAEGKSNKEIAAD 729

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L IS+ T   ++  I+ K    +R     +  + 
Sbjct: 730 LVISQRTAEAHVEHILVKLGFTSRLQIATWVAQR 763


>gi|172063800|ref|YP_001811451.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996317|gb|ACB67235.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 227

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G   A    +    D  + +   LT R+ + L  ++EGK++ +I  +L ++  T+ N++ 
Sbjct: 132 GATQARPGGLPAGDDRAFER---LTPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLY 188

Query: 223 SIMRKTATKTRSGAIAYAVRN 243
           ++ R+     R+ A  +  R+
Sbjct: 189 ALFRQIGVSNRTEAALWLARH 209


>gi|70732244|ref|YP_262000.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346543|gb|AAY94149.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 205

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT R+ E L  I++GKT+ EIA  L IS  TV  +++S++      +R+ A   
Sbjct: 146 QLTTRQQEVLRLIAQGKTNKEIARELDISPFTVRIHVSSLLHTLKVPSRAAAAVK 200


>gi|325002788|ref|ZP_08123900.1| two component transcriptional regulator, LuxR family protein
           [Pseudonocardia sp. P1]
          Length = 225

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A    +      +   LTGRE E L  +  G T+ EIA  L IS  T   ++  ++ K  
Sbjct: 145 ARHGPAAPPGTDRLAVLTGREREVLALVGRGHTNGEIAAQLVISPATARTHVGRLLTKLG 204

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R   +  A    +V
Sbjct: 205 ARDRVQLVVIAHETGLV 221


>gi|300313654|ref|YP_003777746.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300076439|gb|ADJ65838.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 485

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  IS G+++ E A  + IS +TV  ++ SI RK    TR+ A    +   +
Sbjct: 425 LSEREAEVLRRISLGESNKEAARAMQISPSTVRTHVESIFRKLQCSTRAAATLKGLSLGL 484

Query: 246 V 246
           +
Sbjct: 485 I 485


>gi|254249381|ref|ZP_04942701.1| ATP-dependent transcriptional regulator [Burkholderia cenocepacia
           PC184]
 gi|124875882|gb|EAY65872.1| ATP-dependent transcriptional regulator [Burkholderia cenocepacia
           PC184]
          Length = 743

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L ++      Q     +     G    L+ RE+E L +++ G ++ EIA  L ++  T+ 
Sbjct: 649 LRDLARAFDAQRASGGAPATRPGATGNLSARELEILDYVARGLSNKEIARALRVAPETIK 708

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ +I  K    +R  A+    R+ +
Sbjct: 709 WHLKNIFEKLNVTSRIQAV----RSGL 731


>gi|310644124|ref|YP_003948882.1| response regulator (chey-like receiver domain and hth-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
 gi|309249074|gb|ADO58641.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
          Length = 216

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 5/157 (3%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGLMLLFP 149
           +S  D    + ++  E    +  T  E+     G+        L           +    
Sbjct: 61  MSGLDTMKALREKQNETPVIILTTYNEDDLMIKGLSLGAKGYLLKDTSRENLFRTIESAL 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +G  +L+  +      A    N  ++          LT +E   L  ++ G  S EIA  
Sbjct: 121 RGETLLQPEITARVFAAT---NKKEAKLESRESSLVLTDKERHILKSVAHGFKSKEIAFD 177

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GIS  TV  ++ +I  K    +RS A+A ++   I+
Sbjct: 178 MGISERTVKAHLTNIYNKLGVDSRSEAVAVSLERGIL 214


>gi|313201365|ref|YP_004040023.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|312440681|gb|ADQ84787.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 213

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 58/174 (33%), Gaps = 15/174 (8%)

Query: 79  SSDWPFDLVRCMALSE---KDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCS 132
               P  +V  + +      +    ++ + +     V     +++ P          Y +
Sbjct: 47  MEHHPDVVVMDITMPGIGGLEAIERIMAKDSSAKVLVLSAHEDSVHPKRVLNAGAMGYLT 106

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +    R +              Q    +           L+ RE E
Sbjct: 107 KRSAAEELIKAIRTVAGNKRYLEA---------TVAQQMAIQQLSGEANPVDVLSDREFE 157

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               +++GKT+++IA  L +S  TV  ++ +I +K      +     A+R+ ++
Sbjct: 158 VFIALAKGKTTNDIAETLSLSPRTVGTHLYNIKQKLNANNSAEIALIAMRSGLI 211


>gi|297622465|ref|YP_003703899.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297163645|gb|ADI13356.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 176

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE E L  +++G ++  I   LGIS  TV  ++A++  K   +TR    A
Sbjct: 119 QLTEREREVLGLLAQGLSNRAIGERLGISERTVKTHVANLFDKFGVRTRLELAA 172


>gi|288958809|ref|YP_003449150.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911117|dbj|BAI72606.1| two-component response regulator [Azospirillum sp. B510]
          Length = 226

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   L+ REV+ L  +  G ++  IA  L I+  TV  ++ S++RK     R+ A  +A+
Sbjct: 150 RRKGLSQREVQILRCLLSGNSNKMIANHLNITEATVKVHLKSLLRKINASNRTQAAIWAL 209

Query: 242 RNNI 245
            N I
Sbjct: 210 NNGI 213


>gi|288918501|ref|ZP_06412852.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350141|gb|EFC84367.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 231

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +            R  +L   V ++  G  LL P               + +     
Sbjct: 113 FTAIMAGAAGYVLKQIRGNALVDAVRQVAAGQSLLDP--------------AVTSRVLYR 158

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +   V   +   LT +E   L+ I+EG T+ +IA  + ++  TV NY++S++ K   ++
Sbjct: 159 LREGPVEDERLSGLTDQERRILSLIAEGLTNRQIAARMFLAEKTVKNYVSSMLAKLGMES 218

Query: 233 RSGAIAYAVR 242
           R+ A  +A +
Sbjct: 219 RTQAAVFATK 228


>gi|110634204|ref|YP_674412.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285188|gb|ABG63247.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 310

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 155 LRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           L  RL E+G  A +   QA+           +  LTGRE E L+ + EG+++ EIA  LG
Sbjct: 216 LHLRLMEMGSTAHHSFAQASELDLIKRLPRPEEPLTGREQEVLSLVLEGRSNKEIAKQLG 275

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           IS  TV  + +  M K    T    I  A+
Sbjct: 276 ISHRTVEIHRSRAMAKYNATTAMQLIRRAM 305


>gi|73748854|ref|YP_308093.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73660570|emb|CAI83177.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
          Length = 247

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G T+ EI+V L  +  T+  Y+  IM K     R+ A   A +  +
Sbjct: 187 LSPRELEILIMVARGYTNKEISVNLDYAEITIKKYVKGIMTKLNVSNRTLAGIAAAKFGL 246

Query: 246 V 246
           V
Sbjct: 247 V 247


>gi|147669614|ref|YP_001214432.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|146270562|gb|ABQ17554.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 247

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G T+ EI+V L  +  T+  Y+  IM K     R+ A   A +  +
Sbjct: 187 LSPRELEILIMVARGYTNKEISVNLDYAEITIKKYVKGIMTKLNVSNRTLAGIAAAKFGL 246

Query: 246 V 246
           V
Sbjct: 247 V 247


>gi|325676388|ref|ZP_08156067.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325552949|gb|EGD22632.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 770

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 17/176 (9%)

Query: 86  LVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           LV  + L               +L   V    PE      G      + T         L
Sbjct: 591 LVEALPLLRALDNQYGGAWCFEQLAWAVVEQDPERAAVFLGAAEVLFTATGSPIETFQPL 650

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKS----------------YDVHWGKDFELTG 188
           +    +     R+ L +    AA Q  +  +                 +        LT 
Sbjct: 651 VAYHEQCVRRAREALGDNAFDAARQRGVAMNTEEVIAYALGEQPLDVAEPAADSGHNLTR 710

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE++    ++EG T+  IA  L I+  TV  ++  I+ K    +R+   A+ V   
Sbjct: 711 REMQVAELVAEGMTNRAIAERLVIAPRTVEGHVDHILAKLGFTSRTQVAAWMVAQR 766


>gi|256395178|ref|YP_003116742.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361404|gb|ACU74901.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 9/151 (5%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
           +    L     L   V     + I         Y + +   A +   +  +         
Sbjct: 82  QTAPALPDVRFLALSVSDAAEDVIAVIRAGARGYVTKSISGAELADAVRRVADGDAFFSP 141

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214
                   LA +  + F S       +    LT RE E L +I+ G    E+A  L IS 
Sbjct: 142 -------RLAGFVLDAFASGGAAARDEELDRLTPREREVLRFIARGYAYKEVARELVISI 194

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            TV  +++S++RK     R     +A    +
Sbjct: 195 KTVETHVSSVLRKLQLSNRRELTRWASDRRL 225


>gi|213584966|ref|ZP_03366792.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 49

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 1   AEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 49


>gi|326333266|ref|ZP_08199513.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325948910|gb|EGD41003.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 225

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 9/134 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F ++    +     D R   +   +  +  G  ++ P              LL       
Sbjct: 97  FPSIRAGASGFLLKDARAEEIVEAIRTVHAGHAVVAPSTTR---------RLLEHVATAP 147

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE++ L  ++ G ++ EIA  + +S  TV  ++  ++ K   + 
Sbjct: 148 APDNGRAADIRATLTPRELDMLLELATGDSNAEIACRVHLSEATVKTHVGHVLAKLGLRD 207

Query: 233 RSGAIAYAVRNNIV 246
           R  A+  A    +V
Sbjct: 208 RVQAVVLAYETGLV 221


>gi|311900673|dbj|BAJ33081.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 194

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E LT I  G ++ EIA  L I+  TV  Y+  ++ K   + R   +  A  + +
Sbjct: 129 ITDREREVLTLIGRGLSNAEIAEALFITAATVKAYVTRLLAKLDARDRVHLVITAYEHGL 188

Query: 246 V 246
           V
Sbjct: 189 V 189


>gi|255325408|ref|ZP_05366512.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
 gi|255297494|gb|EET76807.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
          Length = 219

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 2/156 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++      + +     +    F+         A   + +     D   +  G +    K
Sbjct: 64  GIAAAQAILSRVPECRIIMLTTFNEEELVAQSIAAGAHGFLLKDADP-EVLAGAVRDVAK 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVI 209
           G  +L  ++    L A   A           +   L T RE+E L+ I+ G T+ EIA  
Sbjct: 123 GESVLASQVTGPVLEAYRTALTRGQLSAQERQGLSLVTRREMEVLSLIARGATNSEIAAE 182

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + I+  TV  +++S+M K A + R   + +A R  I
Sbjct: 183 MVIAETTVKTHVSSLMSKLAARDRVALVLFAQRAGI 218


>gi|239940359|ref|ZP_04692296.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291443791|ref|ZP_06583181.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346738|gb|EFE73642.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 220

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G T+ EIA  L +   T   ++A+++ KT  + R+ A+  A  +  
Sbjct: 157 LTDREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESGF 216

Query: 246 V 246
           +
Sbjct: 217 I 217


>gi|254477011|ref|ZP_05090397.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp.
           R11]
 gi|214031254|gb|EEB72089.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp.
           R11]
          Length = 239

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 79/234 (33%), Gaps = 22/234 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMY-ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           D +  M+    TV     +   + E  G  H +      + +   D      +  + V  
Sbjct: 8   DFILEMLDAASTVDGLREIVERVCESFGVDHAMY----HWVDSAGDHYYFGTYKDEWVAR 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA----------GMDNRYCSLTFDVAR 139
                  +   V+    + F PV     +  + PA           + N+  S+     +
Sbjct: 64  YQEKSYVRVDPVIIGCYQRFHPVDWRRLDWSSKPAREFMQDARDHDVGNQGYSIPIRGPK 123

Query: 140 IRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMF--KSYDVHWGKDFELTGREVE 192
            +  L  +         D   E       L+  Y          D   G+   L+ RE++
Sbjct: 124 GQFALFTVSNNCDDATWDNFIERHSRDLILMGHYLNRKVLEFEPDRGPGQVQPLSPREID 183

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LT ++ G +  ++A  L IS +T+  YI S   K      + AIA A+   ++
Sbjct: 184 ALTLLAMGYSRAQVAQTLSISEHTLRVYIESARFKLGAINTTHAIARALSLGLI 237


>gi|213850451|ref|ZP_03381349.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 181

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNR----YCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           +   E+        PE       MD      +  + F+V   ++ +         +L   
Sbjct: 40  EFCREVLQRTAQQFPEVKIIITAMDGSQKWLHEVMQFNV---QVVVPRDSDAETFVLALN 96

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
               G++     +   S ++       L+ R+ E L  ++ G+++ +I   L IS  TV 
Sbjct: 97  TVARGMM-FLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVK 155

Query: 219 NYIASIMRKTATKTRSGAI 237
            ++ S+ R+   K R+ A 
Sbjct: 156 AHLESLYRRLDVKNRTQAA 174


>gi|154496530|ref|ZP_02035226.1| hypothetical protein BACCAP_00822 [Bacteroides capillosus ATCC
           29799]
 gi|150274163|gb|EDN01254.1| hypothetical protein BACCAP_00822 [Bacteroides capillosus ATCC
           29799]
          Length = 817

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAY-----QANMFKSYDVHWGKDFELTGREVEC 193
           R  + ++ L P  +      + +I  L  +     ++ +F   + +  +  +LT RE E 
Sbjct: 710 RKYLSILFLLPSMKKKHGKAIQKIKALEIHYTKAEESRIFFMLEKYPEQMGQLTEREREV 769

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              ++ G  + EIA  L IS  TV ++I SI  KT    RS  +
Sbjct: 770 AQLVAAGLRNREIAEKLFISEETVKSHIRSIFNKTNIDRRSRLV 813


>gi|87120553|ref|ZP_01076447.1| putative regulator in two-component regulatory system; LuxR family
           protein [Marinomonas sp. MED121]
 gi|86164196|gb|EAQ65467.1| putative regulator in two-component regulatory system; LuxR family
           protein [Marinomonas sp. MED121]
          Length = 216

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 54/153 (35%), Gaps = 2/153 (1%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
              D Y  +  R   +  PV     E  T          +L F     +     +     
Sbjct: 60  GSGDLYGLIRIRSDFVDLPVAVISGEEDTSVMAKVLEAGALGFIPKTSQPS--DIAQAIN 117

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            IL   +W    L     N  K       +  ELT  + + L ++ EG  + +IA  L I
Sbjct: 118 AILEGEIWLPEHLKDAVLNQPKPDLDMVKRVSELTPSQYKVLCYLHEGLLNKQIAYELNI 177

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV  +I +I +K +   R+ A+  A    +
Sbjct: 178 SEATVKAHITAIFKKLSINNRTQAVLIASELKL 210


>gi|329941768|ref|ZP_08291033.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299485|gb|EGG43385.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 221

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +A + +      L     +    F              + +     
Sbjct: 49  DVVLMDIRMPVLDGLAATRRITGDERLAGVKVIMLTTFELDEYVFEAIRSGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   +  +     ++         L+A + A   +           LT RE E + 
Sbjct: 109 EPAELLRAVRAVVEGDALLSPGVTRR--LIAEFAARSKEP--AAAASLARLTEREREVMA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 165 LVGLGLSNEEIARRLVVSPLTAKIHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|289812420|ref|ZP_06543049.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 170

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNR----YCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           +   E+        PE       MD      +  + F+V   ++ +         +L   
Sbjct: 29  EFCREVLQRTAQQFPEVKIIITAMDGSQKWLHEVMQFNV---QVVVPRDSDAETFVLALN 85

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
               G++     +   S ++       L+ R+ E L  ++ G+++ +I   L IS  TV 
Sbjct: 86  TVARGMM-FLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVK 144

Query: 219 NYIASIMRKTATKTRSGAI 237
            ++ S+ R+   K R+ A 
Sbjct: 145 AHLESLYRRLDVKNRTQAA 163


>gi|70731557|ref|YP_261298.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345856|gb|AAY93462.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 219

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 5/176 (2%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+    I+  D        +    + K  +   +   +     HT P  I          
Sbjct: 45  ERLHPDIILLDLSMKHTGGLDALRRLKALHPQSK---VLILSMHTDPALIMQALECGAHG 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L    A      +         L   +     +        +       ++  LT R+
Sbjct: 102 YLLKDTTATELEHALQALRNNERYLSPAIAHT--VINQALTRAQKQPPPPEQNHNLTARQ 159

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  I  GK++ EIA+ LG+S  TV  + + IM++      +G + +AVR  I+
Sbjct: 160 LEILRLIVRGKSTREIALGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFAVRERII 215


>gi|56752243|ref|YP_172944.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300669|ref|YP_400877.1| two component LuxR family transcriptional regulator [Synechococcus
           elongatus PCC 7942]
 gi|56687202|dbj|BAD80424.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169550|gb|ABB57890.1| two component transcriptional regulator, LuxR family [Synechococcus
           elongatus PCC 7942]
          Length = 235

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 23/215 (10%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP---TE 107
           A+  Y+  S F +      QE      +    P  ++  + +   D Y  + Q       
Sbjct: 22  AVQAYLEDSGFRVRTAANAQEGW--EQLQQARPDLVITDVMMPRVDGYQFLAQLRGDDRF 79

Query: 108 LFCPVFHTLPENITP------PAGMDNRYCSLTFDVARIRIGLMLLFPKGR--------- 152
              PV       +T        AG D+ Y +  FD   + + +  L  + R         
Sbjct: 80  KALPVILLTARGMTGDRIQGYEAGCDD-YIAKPFDPDELVVRVENLLRRRRETIAAVADT 138

Query: 153 --IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
               L +   ++  + A      +          +LT RE   L  +++G  + EIA  L
Sbjct: 139 GNPDLAEVARQVAEIRAMLQQKPQLQTQATPLALDLTPREESVLKLVAQGLMNKEIAREL 198

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             S   +  Y++ +  KT T +R+  + +++ + +
Sbjct: 199 DTSVRNIEKYVSRLFSKTGTNSRTELVRFSLEHGL 233


>gi|37519917|ref|NP_923294.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210909|dbj|BAC88289.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 210

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 8/154 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    + +        L    F      +         Y   +    ++   +  L   
Sbjct: 62  GVEATRQIHQRYPWIRILVLTTFDEDEYILQSLQAGALGYLLKSTPARQVASAIRTLHQG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209
              +          +AA   +  ++      + F+  + RE+E L  I +GK + EIA  
Sbjct: 122 HSQLGPT-------IAARVFSQLQNPPARKPESFQQFSERELEVLGLIGQGKNNREIAQA 174

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L ++  TV N++  I+ +   + R+    +  R+
Sbjct: 175 LHLTEGTVKNHVTRILAQLGLRDRTQLALWTHRH 208


>gi|78184554|ref|YP_376989.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168848|gb|ABB25945.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 228

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 21/215 (9%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
           I L     + +R +    +   SH      D  Q++ L+ + S +  F+L+ C    E+ 
Sbjct: 28  IALAMRGRFFLRCFC-KSFSEKSHIGCAVTD--QDRCLEYLRSDE--FELLICTDQLERG 82

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
             Y +++R  E           N+       N    + +D A     ++    +  I+  
Sbjct: 83  NGYELVRRAKEQHS--------NLKVVVLALNDEIPVEYDNAPWLEAVV---AEADIVED 131

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGKTSDEIAVILG 211
            +  E  +LA    + ++S  +   +        LT RE E L  ++ G T  EIA  L 
Sbjct: 132 QKPLEAAVLAVMGHHSYRSPSLRGRELPYLSCPRLTPREYEVLDRLARGMTDKEIAEALV 191

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  T   Y   +++      R  A+   +R  +V
Sbjct: 192 VSEQTSRTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226


>gi|302524500|ref|ZP_07276842.1| predicted protein [Streptomyces sp. AA4]
 gi|302433395|gb|EFL05211.1| predicted protein [Streptomyces sp. AA4]
          Length = 1001

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 23/198 (11%)

Query: 69   FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            F + +L+ +  S   +  V+   L+E D+   +L R      PV H L +     A    
Sbjct: 804  FGDTQLNCLRVSFAGYAAVQRGDLTEADRVAGLL-REAGTNAPVLHALADRQQGFADAAR 862

Query: 129  RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--------------- 173
               +   +  R    ++  F    +  +  L    LL   +A++                
Sbjct: 863  GKATEAVERLRGSATVLRGFGMNLLAAQAELELAELLDPPEADVVTSSAAAAFTAAGSTP 922

Query: 174  -------KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                   + + V   +   LT RE E    + EG ++ +IA  L +S  TV  ++ ++ R
Sbjct: 923  WPERIVKQEHSVPTQRSGPLTRRESEIAVLVGEGLSNADIASALFLSERTVETHLRNVYR 982

Query: 227  KTATKTRSGAIAYAVRNN 244
            K   K+R     +     
Sbjct: 983  KLGLKSRVRLAQWVRDRG 1000


>gi|300786261|ref|YP_003766552.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795775|gb|ADJ46150.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 163 GLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
             L A   N  +  +V     +  +L+ +E   L  ++EG T+ +IA  L ++  TV NY
Sbjct: 129 ATLTASVMNKLRGENVAAPDPRYEQLSPQERRVLDLVAEGLTNRQIAERLFLAEKTVKNY 188

Query: 221 IASIMRKTATKTRSGAIAY 239
           ++S++ K   + R+ A  Y
Sbjct: 189 VSSVLHKLGVERRTSAAVY 207


>gi|291008856|ref|ZP_06566829.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 755

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +G  + ++R     L     A            +  LT RE E    ++EGK++ EIA  
Sbjct: 659 EGERMDQERTVAYALGETSAARAPARAGTASEGELALTRREREVAALVAEGKSNKEIAAD 718

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L IS+ T   ++  I+ K    +R     +  + 
Sbjct: 719 LVISQRTAEAHVEHILVKLGFTSRLQIATWVAQR 752


>gi|255655281|ref|ZP_05400690.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 215

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    + LT +E+  +  I+ G  + EI+  L +S  T+ N I +I+ K   + R+    
Sbjct: 146 HLYDMYNLTEKEISIIRLIANGLNNKEISKELFLSEGTIKNNITNILGKLELRDRTQLAI 205

Query: 239 YAVRNNIV 246
           +A +N IV
Sbjct: 206 FAFKNKIV 213


>gi|86355727|ref|YP_467619.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86279829|gb|ABC88892.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 260

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L+         L   L++   + A + N  K   +       LT REV+ L  I +G  
Sbjct: 149 ALLNRLTNKGAQLEPSLYQTKSVDAARNNALK---LRRDSISALTTREVQILDLICKGTQ 205

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  IA  L +S NTV  ++ +I +K   + R+ A + 
Sbjct: 206 NKIIADKLHLSENTVKVHVRNIYKKMNVRNRTEAASR 242


>gi|77745297|gb|ABB02549.1| response regulator [Lactobacillus reuteri]
          Length = 217

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S     G    L+ RE E L  I  G T+ EIA+ + IS  TV  +   IM+K    + +
Sbjct: 144 SPHFDLGNYIALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHA 203

Query: 235 GAIAYAVRNNIV 246
             + YAV++ +V
Sbjct: 204 ELLHYAVKHQLV 215


>gi|331699219|ref|YP_004335458.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
            CB1190]
 gi|326953908|gb|AEA27605.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans
            CB1190]
          Length = 1033

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 136  DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              A +R  L      G   L + + +   LA                   LT RE   L 
Sbjct: 921  AAAELRCALATAVELGARPLAEAVRD---LAGRAGLALDDAVRPRAGGAVLTPRERSVLG 977

Query: 196  WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G T+ ++   L IS  TV+ +++ +M K    +R+ A++ A    ++
Sbjct: 978  LVAGGLTNRQVGAELFISEKTVSVHLSRVMAKLGAGSRTEAVSLAWSRGLL 1028


>gi|297156887|gb|ADI06599.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 222

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 59/171 (34%), Gaps = 15/171 (8%)

Query: 83  PFDLVRCMAL---SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFD 136
           P  +V  + L   S  +    +L    E    V     ++ +  A M      Y      
Sbjct: 56  PDLVVMDLGLPGRSGTEATRRILCARPEARVVVMTMSEDDDSLLAAMRAGARGYLLKGAG 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECL 194
              I   L  +   G +           +A     +  S+     K+    LT RE E L
Sbjct: 116 RDEILRALHTVARGGAVFSP-------RMAERLGTLLGSFGTASAKEAFPTLTAREREVL 168

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++ G    +IA  L ++  TV N++ SI  K   + R+ AI  A    +
Sbjct: 169 ELLAGGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRAREAGL 219


>gi|282859564|ref|ZP_06268669.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
 gi|282587792|gb|EFB92992.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
          Length = 200

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV
Sbjct: 131 KNKILSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAV 190

Query: 242 RNNIV 246
            +  V
Sbjct: 191 MHGYV 195


>gi|238024126|ref|YP_002908358.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878791|gb|ACR31123.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae
           BGR1]
          Length = 520

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 1/113 (0%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREV 191
              D+   +   M L      +++D  W    L    AN+ ++     G    +LT RE 
Sbjct: 387 AILDITDRKRSEMELVSAIETVMQDASWFSRTLIEKLANVRRANAPDAGAHLSDLTAREC 446

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +    + +G +  +IA  L +S  TV N++A+I  K    +R+ AI +A    
Sbjct: 447 DVFEQLCKGLSDKDIAKALELSPATVRNHVATIYAKLDVHSRAEAIVWAQTRG 499


>gi|167586712|ref|ZP_02379100.1| DNA-binding response regulator NarL [Burkholderia ubonensis Bu]
          Length = 76

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G    LT RE + +  I+ G ++ EIA    ++ +TV  ++ ++++K    +R     Y
Sbjct: 3   AGAPAALTPREHDIVRAIARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVY 62

Query: 240 AVRNNI 245
           AV   +
Sbjct: 63  AVEQGL 68


>gi|111017210|ref|YP_700182.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110816740|gb|ABG92024.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 287

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILG 211
           + DRL + GL A  QA   K   +    D     L+ RE + L  ++ G  + EIA  L 
Sbjct: 192 IADRLGDDGLGAEVQAVEQKLRRLTAPGDPSTVTLSRRESDVLAHVALGCRNAEIADRLS 251

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  TV +Y+ ++M K   ++R  A+  A R  ++
Sbjct: 252 LSVETVKSYMRNLMGKLEVRSRQEAVVEARRQGLL 286


>gi|24306039|gb|AAN52499.1| SpnR [Serratia marcescens]
          Length = 247

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 7/188 (3%)

Query: 63  LVRWDLFQEQKLDSIVSSDW----PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           L R + FQ    D ++ + +    PF     + L    K+  +             T   
Sbjct: 57  LYRTNNFQ--LTDPVILTAFRRTSPFAWDENITLMSDLKFTKIFSLAKHYNIVNGFTFVL 114

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +                +   +   L       +I+L D   ++   A   ++  + + +
Sbjct: 115 HDHMNNLTLLSVIIANNEQGELEARLTFERGAIQILLIDINEQMYCFAGTSSSGRQRHHM 174

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              K    T RE E L W S GKT  +IA I GIS + V  ++ +I+ K        AI 
Sbjct: 175 DRVKPI-FTPRENEVLYWSSMGKTYGDIAAIAGISISMVKFHMGNIVSKLGVSNARQAIR 233

Query: 239 YAVRNNIV 246
             V   ++
Sbjct: 234 LGVELELI 241


>gi|302390092|ref|YP_003825913.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200720|gb|ADL08290.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
          Length = 327

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            + +V       LT +E +    ++ GKT+ EIA  L +S  TV NY++ I+RK     R
Sbjct: 253 PNSEVGKNPLNLLTAQEQKVFYALALGKTNKEIASELYLSPATVRNYVSKILRKLNLPNR 312

Query: 234 SGAIAYAVRN 243
           S  ++YA++N
Sbjct: 313 SAVVSYAMKN 322


>gi|300814540|ref|ZP_07094796.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300511367|gb|EFK38611.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 208

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE++ L  ++ G  +DEIA  LGIS NTV  +IA ++ KT  KTR+    
Sbjct: 143 QLTPREIQVLRLLTTGVGNDEIASKLGISENTVKTHIAHLLSKTGFKTRTQLAI 196


>gi|296451265|ref|ZP_06893005.1| DNA-binding response regulator [Clostridium difficile NAP08]
 gi|296880383|ref|ZP_06904346.1| DNA-binding response regulator [Clostridium difficile NAP07]
 gi|296259871|gb|EFH06726.1| DNA-binding response regulator [Clostridium difficile NAP08]
 gi|296428624|gb|EFH14508.1| DNA-binding response regulator [Clostridium difficile NAP07]
          Length = 218

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    + LT +E+  +  I+ G  + EI+  L +S  T+ N I +I+ K   + R+    
Sbjct: 149 HLYDMYNLTEKEISIIRLIANGLNNKEISKELFLSEGTIKNNITNILGKLELRDRTQLAI 208

Query: 239 YAVRNNIV 246
           +A +N IV
Sbjct: 209 FAFKNKIV 216


>gi|291537088|emb|CBL10200.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis M50/1]
          Length = 241

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 11/125 (8%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLL--------FPKGRIILRDRLWEIGLLAAYQANMFK 174
           P  +D     +     + R+ L LL              IL+  L          AN + 
Sbjct: 116 PQKLDMGCGLIIMKEGKTRVFLNLLRKCGEPDVTGHEMEILQTFLPHFEKNVFAYANHYV 175

Query: 175 SYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           S   +  K+ E   L+GRE E +  + +G ++ EIA  L IS  TV  ++++I  K    
Sbjct: 176 SGAENTIKNREADLLSGREQEIVRLVRKGYSNQEIAGQLLISEATVKKHLSNIFEKLGIS 235

Query: 232 TRSGA 236
            R+  
Sbjct: 236 RRTQL 240


>gi|225018320|ref|ZP_03707512.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum
           DSM 5476]
 gi|224948920|gb|EEG30129.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum
           DSM 5476]
          Length = 206

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        RI   +  +   G +  +D L  I     +  +   S          LT
Sbjct: 99  RGYILKNSPAQRILTAVRAVAEGGTVFQQDILEYIRDRTVFPDHTIFSL---------LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE+E +  I+EG ++ EIA  L +S  TV N+I+ I+ KT  + R+    +
Sbjct: 150 PREMEVVALIAEGLSNKEIAERLFLSNGTVRNHISVILEKTGLEHRTQIAVH 201


>gi|209521344|ref|ZP_03270059.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. H160]
 gi|209498229|gb|EDZ98369.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. H160]
          Length = 921

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 23/153 (15%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARI--RIGLMLLFPKGRIILRDRLWEI------- 162
           V   L   +   +G  ++  S   +  RI   +GL+  F      +R  L          
Sbjct: 762 VVSLLLALVHEHSGASDKAFSALENALRIGCAMGLISSFVDEGPPMRALLERFRRTPSEI 821

Query: 163 ---------GLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAV 208
                     LL+A+            G D +     L+ RE+E L +++ G ++ EI  
Sbjct: 822 STAHAAYIGTLLSAFDEVEKMPSPSSSGADTKIAPGTLSARELEILGYVARGMSNKEIGR 881

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            L ++  TV  ++ ++  K    +R  A+  A 
Sbjct: 882 SLKLAPETVKWHMKNVFEKLNVNSRFEAVQSAF 914


>gi|326943150|gb|AEA19046.1| two-component response regulator YocG [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 200

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 35/65 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA +L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNN 244
           A    
Sbjct: 194 AEEKG 198


>gi|254381629|ref|ZP_04996993.1| luxR family two-component response regulator [Streptomyces sp. Mg1]
 gi|194340538|gb|EDX21504.1| luxR family two-component response regulator [Streptomyces sp. Mg1]
          Length = 234

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 3/163 (1%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P   V  + L + D      +  + +       L       A +D         V +   
Sbjct: 59  PDVAVLDIRLPDGDGITVCRELRSRMPDLACLMLTSFDDEDALLDAIMAGAAGYVLKQIK 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISE 199
           G  L+     +     + +    A    ++     V    D     L+ RE   L  I E
Sbjct: 119 GSDLVSAVRTVATGQSMLDPATTARLMHSLRDPEAVKAPDDDRLAALSERERSVLELIGE 178

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           G T+ +IA  L +S  TV N+I+ ++ K   + R  A   A +
Sbjct: 179 GLTNAQIAKRLYLSEKTVKNHISRLLDKLGVERRVQAAVIAAQ 221


>gi|327313696|ref|YP_004329133.1| LuxR family transcriptional regulator [Prevotella denticola F0289]
 gi|326945245|gb|AEA21130.1| transcriptional regulator, LuxR family [Prevotella denticola F0289]
          Length = 209

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S    YAV
Sbjct: 140 KNKILSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAV 199

Query: 242 RNNIV 246
            +  +
Sbjct: 200 MHGYI 204


>gi|315123187|ref|YP_004065193.1| putative csg operon transcription regulator (LuxR family) protein
           [Pseudoalteromonas sp. SM9913]
 gi|315016947|gb|ADT70284.1| putative csg operon transcription regulator (LuxR family) protein
           [Pseudoalteromonas sp. SM9913]
          Length = 229

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LT RE   +  I++G ++++IA  L IS +TV  ++ S  +KT ++ R     +A R
Sbjct: 162 HLTKREKSVIHLIAQGASNNKIADKLNISDHTVKTHLYSAFKKTNSRNRVELANWAQR 219


>gi|227544258|ref|ZP_03974307.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300910231|ref|ZP_07127691.1| transcriptional regulator [Lactobacillus reuteri SD2112]
 gi|227185771|gb|EEI65842.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300892879|gb|EFK86239.1| transcriptional regulator [Lactobacillus reuteri SD2112]
          Length = 223

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S     G    L+ RE E L  I  G T+ EIA+ + IS  TV  +   IM+K    + +
Sbjct: 150 SPHFDLGNYIALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHA 209

Query: 235 GAIAYAVRNNIV 246
             + YAV++ +V
Sbjct: 210 ELLHYAVKHQLV 221


>gi|182437703|ref|YP_001825422.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778339|ref|ZP_08237604.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466219|dbj|BAG20739.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658672|gb|EGE43518.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 221

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 164 LLAAYQANMFKSYDVHWG---KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           LL AY  ++  +         +   LT RE E LT I +G ++ EIA  L ++ +TV  +
Sbjct: 133 LLDAYVHHLPATPGAPAAADPRITALTEREREILTVIGQGWSNSEIAARLHLAESTVKTH 192

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +  I+ KT  + R  A+  A    +V
Sbjct: 193 VTRILAKTGARDRVQAVILAYDTRLV 218


>gi|170699404|ref|ZP_02890449.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135660|gb|EDT03943.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 227

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G   A    +    D  + +   LT R+ + L  ++EGK++ +I  +L ++  T+ N++ 
Sbjct: 132 GATQARPGGLPAGDDRAFER---LTPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLY 188

Query: 223 SIMRKTATKTRSGAIAYAVRN 243
           ++ R+     R+ A  +  R+
Sbjct: 189 ALFRQIGVSNRTEAALWLARH 209


>gi|255523112|ref|ZP_05390084.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
 gi|255513227|gb|EET89495.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
          Length = 821

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +L+ RE+E LT   +G    EIA  L IS  TV  ++ +I +K     +  AI  A
Sbjct: 756 EEKVKLSQREIEILTLTVKGLKRSEIAAKLNISEGTVKTHLQNIYKKLQVSGKFEAIKIA 815

Query: 241 VRNNIV 246
               IV
Sbjct: 816 QMYGIV 821


>gi|253999276|ref|YP_003051339.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|253985955|gb|ACT50812.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
          Length = 213

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 58/174 (33%), Gaps = 15/174 (8%)

Query: 79  SSDWPFDLVRCMALSE---KDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCS 132
               P  +V  + +      +    ++ + +     V     +++ P          Y +
Sbjct: 47  MEHHPDVVVMDITMPGIGGLEAIERIMAKDSSAKVLVLSAHEDSVHPKRVLNAGAMGYLT 106

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +    R +              Q    +           L+ RE E
Sbjct: 107 KRSAAEELIKAIRTVAGNKRYLEA---------TVAQQMAIQQLSGEANPVDVLSDREFE 157

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               +++GKT+++IA  L +S  TV  ++ +I +K      +     A+R+ ++
Sbjct: 158 VFIALAKGKTTNDIAETLSLSPRTVGTHLYNIKQKLNANNSAEIALIAMRSGLI 211


>gi|225163774|ref|ZP_03726073.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224801604|gb|EEG19901.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 227

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +Q    IV +D     V  + L ++ K   +L R   +     H     +     +    
Sbjct: 46  KQHNPDIVVADLSMPGVTGLDLIQQIKDAGLLTR---IIMLTMHRTRLTVHEAFSVGANA 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L  D     + ++    +G   L  +                 Y+        L+ RE
Sbjct: 103 FVLKSDAFEDLVDIIHRVHEGENTLTSK-------------GLPPYEPACAA--TLSPRE 147

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  IS G ++ EI+  L IS  TV  + + IM+K      +  +  A+R+ +
Sbjct: 148 KDVLEGISAGLSNKEISRRLAISSKTVETHRSRIMQKLNVTKATELVREAMRSGL 202


>gi|146280178|ref|YP_001170335.1| hypothetical protein Rsph17025_4179 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558419|gb|ABP73030.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 232

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A M  +   H   +  LT +E+E L  ++ G  + EIA  +G+S  TV  ++ SI  K  
Sbjct: 130 AFMRLTPRRHSSDERGLTPKELEVLGGLTIGLMNKEIAQNMGLSEVTVKMHVRSICAKLN 189

Query: 230 TKTRSGAIAYAVRNN 244
            K R+ A   A +  
Sbjct: 190 VKNRTQAAMVAAQFG 204


>gi|326385933|ref|ZP_08207558.1| transcriptional regulator, LuxR family protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209605|gb|EGD60397.1| transcriptional regulator, LuxR family protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 880

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 65/179 (36%), Gaps = 11/179 (6%)

Query: 64  VRWDLFQEQKLD---SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             W  +QE  L     +V  D P      +A    +  +        +   V   L  + 
Sbjct: 693 AVWRPYQEAGLALVLHLVDHD-PARA-EAVASDLIECAHATGAEIFAVRALVLRALVRSR 750

Query: 121 TPPAGMDNRYCSLTFDVAR-IRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSY 176
           T       R   +  D+AR  +IGL  L          RL       L A   A+  + +
Sbjct: 751 TGQGAGAERDFVMARDLARQAQIGLPFLQVGPLPPELQRLVPGSAEVLPAPVAASPARPH 810

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           D        L+ RE +    +  G+T+ EIA  LG++ +TV  ++ +I  K     R+ 
Sbjct: 811 DEDSAAR--LSSREQQVALHVGMGRTNKEIARSLGMTEHTVKFHLRNIFAKLGVDRRAH 867


>gi|302524687|ref|ZP_07277029.1| predicted protein [Streptomyces sp. AA4]
 gi|302433582|gb|EFL05398.1| predicted protein [Streptomyces sp. AA4]
          Length = 499

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     V  +  + + +      RP  L    F                Y     
Sbjct: 71  DVVVMDLRMKRVDGIEATRRLRAS--GPRPPVLALTTFDDDELLAGVLRAGAVGYVLKDS 128

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +      +       +  L  Y+        +  G    LT RE + LT
Sbjct: 129 PAEDLIRAVRAVAMGEAWLDPAVTGRV--LTTYREAASARSVMPAGV---LTPRESDVLT 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G T  EIA  LGIS  TV  +   +  K   + R+ AI YA  + +V
Sbjct: 184 AVARGLTDAEIAGTLGISTTTVEAHYERVCAKLRLRDRAAAIVYAFDHGLV 234


>gi|315499018|ref|YP_004087822.1| transcriptional regulator, luxr family [Asticcacaulis excentricus
           CB 48]
 gi|315417030|gb|ADU13671.1| transcriptional regulator, LuxR family [Asticcacaulis excentricus
           CB 48]
          Length = 132

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             ++ RE+  L  ++ G+++ EIA  L +S +TV  ++A +  K     R+ A+  A   
Sbjct: 69  LGISARELTVLHELAAGQSNKEIARKLSVSPHTVKTHVARLYDKLQATRRTDAVRKAREL 128

Query: 244 NIV 246
            ++
Sbjct: 129 GLI 131


>gi|317476845|ref|ZP_07936088.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316907020|gb|EFV28731.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 217

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A    N  +  D   G+  ELT RE++ L  ISEGK + EIA  L +S NTV+ +   ++
Sbjct: 134 AEQVRNQMRRSD--EGRREELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHLL 191

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   K  +  I  A+   I+
Sbjct: 192 DKLDAKNVADLIMTAISRGII 212


>gi|282854807|ref|ZP_06264141.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282581953|gb|EFB87336.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314967298|gb|EFT11397.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981731|gb|EFT25824.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092496|gb|EFT64472.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
          Length = 224

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +
Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|241207011|ref|YP_002978107.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860901|gb|ACS58568.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 260

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L+         L   L++   + A ++N  K   +       LT REV+ L  I +G  
Sbjct: 149 ALLNRLTNNNAQLEPSLYQTKSVDAARSNALK---LRRDSISALTTREVQILDLICKGTQ 205

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  IA  L +S NTV  ++ +I +K   + R+ A + 
Sbjct: 206 NKIIADKLHLSENTVKVHVRNIYKKMNVRNRTEAASR 242


>gi|239906056|ref|YP_002952795.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239795920|dbj|BAH74909.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 218

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +  A   ++ +        LT RE E +  + EG ++ E+A  L IS  T  ++  S+MR
Sbjct: 138 SLLAKTPRAEEESHSAYDSLTPREREVMRLVVEGLSNKEVAAALEISVKTAEHHRGSLMR 197

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   +     + YA +  ++
Sbjct: 198 KLGMQNSVELVRYATKLGLI 217


>gi|223937115|ref|ZP_03629022.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894137|gb|EEF60591.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (39%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           R     L    R +          +A      F+        +  L+ RE   L  +++G
Sbjct: 105 RAAPAKLLEAIRDVSAGGSAMSSSIARKVVASFQKSAPVSPTEAHLSPREQNVLDCLAKG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            T   IA  LGIS  T+  ++  + +K   ++R+ A+A  +R 
Sbjct: 165 MTYKAIACDLGISIETIRTHLKRVYQKLHVQSRTEAVAKYMRR 207


>gi|300787834|ref|YP_003768125.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797348|gb|ADJ47723.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 192

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + L  + EG ++ +IA  L ++  TV  ++ +++ K    +R+ A   A
Sbjct: 135 LTPRERDVLELLGEGLSNRDIAARLRLAERTVKVHVGNVLAKLGVTSRTQAALAA 189


>gi|163739745|ref|ZP_02147153.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107]
 gi|163743097|ref|ZP_02150479.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161383514|gb|EDQ07901.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386975|gb|EDQ11336.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107]
          Length = 214

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 7/139 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML----LFPKGRIILRDRLWEIGLLAA 167
           +    P        M +    ++  +A   +G +L         + I      E  L   
Sbjct: 72  ILEQSPATRILILSMHDSPEYISSALAHGAMGYVLKDVPTEEIRQAIDTVMRGETYLCTG 131

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            + ++    D        LTGRE   L  +++GK++ ++A+ L IS  TV  +  +I RK
Sbjct: 132 AEGSLKPKDDPDREA---LTGREQTILLELAQGKSNKDVALALDISVRTVETHRKNIKRK 188

Query: 228 TATKTRSGAIAYAVRNNIV 246
               + +G   YA+ + ++
Sbjct: 189 LGISSTAGLTRYALEHGVL 207


>gi|83945712|ref|ZP_00958057.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83850913|gb|EAP88773.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 210

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 4/134 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   + ++ +  A + N         AR  + +  L      I +        +A     
Sbjct: 80  VATVMGDDASVIAALSNGADGYLLKDARQDVFVRQLT----AIDQGEPALSPSIARRIIE 135

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F+   +      +LT RE + L+ I  G  + E A  LG+S +T+  +I S+  K    
Sbjct: 136 HFRRTALVETDGGDLTPRERDVLSLIGRGLRNAEAASALGLSEHTIAGHIKSVYSKLGIS 195

Query: 232 TRSGAIAYAVRNNI 245
           TR+ A   A R  +
Sbjct: 196 TRAEAALLASRLGL 209


>gi|330960741|gb|EGH61001.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 207

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT R+ + L+ ++ GKT+ EIA  LGIS  TV  +++S+++     TR+ A A
Sbjct: 146 PLTARQKQVLSLVAAGKTNKEIAKDLGISPFTVRIHVSSLLKVLGVSTRAAAAA 199


>gi|315109607|gb|EFT81583.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
          Length = 224

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +
Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|285018517|ref|YP_003376228.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283473735|emb|CBA16238.1| probable two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 236

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKT 202
              L    + + +D+L+    L+    + ++         + L T RE E +  +SEG +
Sbjct: 109 FRELLRAIQQVSKDQLYISPALSQSLVSEYRCPPGDAASAYTLLTSREREVVQLLSEGLS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +IA  L IS  T+  +   IM K   ++ +    YA+R  +
Sbjct: 169 TKDIAARLHISVKTIGTHREHIMLKLGMQSIAQLTRYAIREGL 211


>gi|282863211|ref|ZP_06272271.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562193|gb|EFB67735.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 216

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 13/171 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDNRYCSLTF 135
           P  +   + +   D           +  P        F              + +     
Sbjct: 49  PDVIAMDVRMPLMDGIEATRAVLRAVPQPPKILVVTTFENDEYVYEALRAGADGFLLKRA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A I   + L+     ++    + ++       A    S          LT RE   L 
Sbjct: 109 RPAEIVHAVRLVASGESLLFPAAVRQLA------AEYGTSEARAAMDRAALTERESAVLR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 163 LMARGLSNAEIAAELVVGVQTVKTHVSAVLAKLGARDRTQAVIAAYESGFV 213


>gi|227494727|ref|ZP_03925043.1| possible response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831727|gb|EEH64110.1| possible response regulator [Actinomyces coleocanis DSM 15436]
          Length = 221

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 9/145 (6%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           +   L   V  +  + +         Y + T     +   ++ +                
Sbjct: 84  QTKFLALSVSDSAEDVVAVIRAGARGYVTKTISTEELVQSILRVGAGDAAFSP------- 136

Query: 164 LLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            LA +  + F +  V    +    L+ RE E +  I+ G T  E A  L IS  TV  ++
Sbjct: 137 RLAGFVLDAFGTAQVSETDEELDLLSAREQEVMRLIARGYTYKETAAELFISIKTVETHV 196

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++RK     R+    +A   N+V
Sbjct: 197 SAVLRKLQLSNRNELTHWATVRNLV 221


>gi|16762696|ref|NP_458313.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144183|ref|NP_807525.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052820|ref|ZP_03345698.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213419230|ref|ZP_03352296.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213426509|ref|ZP_03359259.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580128|ref|ZP_03361954.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647458|ref|ZP_03377511.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289824322|ref|ZP_06543915.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25298761|pir||AG0986 hypothetical luxR-family transcription regulator STY4197 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505002|emb|CAD08019.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139820|gb|AAO71385.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 200

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNR----YCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           +   E+        PE       MD      +  + F+V   ++ +         +L   
Sbjct: 59  EFCREVLQRTAQQFPEVKIIITAMDGSQKWLHEVMQFNV---QVVVPRDSDAETFVLALN 115

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
               G++     +   S ++       L+ R+ E L  ++ G+++ +I   L IS  TV 
Sbjct: 116 TVARGMM-FLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVK 174

Query: 219 NYIASIMRKTATKTRSGAI 237
            ++ S+ R+   K R+ A 
Sbjct: 175 AHLESLYRRLDVKNRTQAA 193


>gi|152977535|ref|YP_001377052.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|114152690|gb|ABI52594.1| two-component response regulator [Bacillus cytotoxicus]
 gi|152026287|gb|ABS24057.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 200

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 19/163 (11%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   + ++E  +          +    F              + Y         +   
Sbjct: 57  MPIQSGLDVAETLQKKK--SSCKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEELAEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R I  + ++ +                 W +   L+ RE E L    EGKT+
Sbjct: 115 IRNVMKGKREISPELMFGL-----------------WQEQNPLSDREREVLLLAKEGKTT 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++IA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 158 NDIAKALYLSPGTVRNYISEVLTKLNAKNRIEAITIAEEKGWI 200


>gi|302559849|ref|ZP_07312191.1| LuxR family DNA-binding response regulator [Streptomyces
           griseoflavus Tu4000]
 gi|302477467|gb|EFL40560.1| LuxR family DNA-binding response regulator [Streptomyces
           griseoflavus Tu4000]
          Length = 230

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  ++EG TS +IA +L IS  TV  + A+++ K   + R     YA+R  +
Sbjct: 168 ITDREEEILKLVAEGHTSQQIAGLLVISPKTVERHRANLLAKLGLRDRLELTRYAIRVGL 227

Query: 246 V 246
           +
Sbjct: 228 I 228


>gi|148273247|ref|YP_001222808.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831177|emb|CAN02129.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 220

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 64/172 (37%), Gaps = 6/172 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +              P  +    F     + T   G  + +     
Sbjct: 49  DVVLLDMRMPVMDGLETVRALFDGTRDAPPRVIVLTTFALDRASATAIRGGASGFLLKDA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECL 194
             A +   +  +     ++  D L ++     + ++   +        F  L+ RE +  
Sbjct: 109 TPAFLAAAIRAVHAGSAVLAPDELTQL-----FTSDATAAPAPPAPPAFRSLSAREKDVF 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G ++ E+A +  +S +TV  +++SI+ K A + R   + YA  + +V
Sbjct: 164 GHVARGLSNAEVAALEFVSESTVKTHVSSILAKLALRDRVQLVVYAHDHRLV 215


>gi|56477414|ref|YP_159003.1| transcriptional regulator NarL [Aromatoleum aromaticum EbN1]
 gi|56313457|emb|CAI08102.1| Nitrate/nitrite TWO-component response regulator NARL [Aromatoleum
           aromaticum EbN1]
          Length = 220

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   V     + +       + Y     +  +  +  +     GRI++ D L  +   A 
Sbjct: 86  VMVTVSDAAEDLVAALRAGADGYLLKDMEPEQ-MVEALQAAAAGRIVVSDALTHLMAAAL 144

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            Q     S       D  LT +E   L  I+ G ++  IA  LGI+  TV  ++  ++RK
Sbjct: 145 RQEKRPDSV-----TDAGLTEQEQRILERIAAGLSNKLIARELGIAEGTVKVHVKHVLRK 199

Query: 228 TATKTRSGAIAYAVRN 243
              ++R  A  +AV N
Sbjct: 200 LNFRSRVEAAVWAVAN 215


>gi|329928337|ref|ZP_08282208.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937894|gb|EGG34299.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 599

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 85/255 (33%), Gaps = 15/255 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  +          +    T  +       D + R++ +D        +  L E      
Sbjct: 350 MALQGHVAVYTERGKGTLVTCTLPRQTELKDEVIRLLVVDDHSVIRESLRTLLE--EQQD 407

Query: 61  FLLVRWDLFQEQKLD-------SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           F +V      EQ ++        +V  D     V  ++ S   K      R   L    F
Sbjct: 408 FQVVGTAEDGEQAIELCRQVRPQLVLMDVEMPNVDGISASRAIKESWPHIRI--LILTTF 465

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
               + +       + Y   +     +   +  +   G +I +       L A  +A+  
Sbjct: 466 EDTKQALEAMRSGVDGYLLKSMQPLELAETIRTVHRGGTLIDQG--MSHKLFAQLEADNG 523

Query: 174 --KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                 +     ++LT RE+E L ++SEG     IA  L +S  TV NY +S+  K   +
Sbjct: 524 GDDPSSIKVSSAYDLTPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVR 583

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    ++
Sbjct: 584 NREEAVQKAREAGLL 598


>gi|325860035|ref|ZP_08173162.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
 gi|325482561|gb|EGC85567.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
          Length = 203

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S    YAV
Sbjct: 134 KNKILSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAV 193

Query: 242 RNNIV 246
            +  +
Sbjct: 194 MHGYI 198


>gi|291302859|ref|YP_003514137.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572079|gb|ADD45044.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 155

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------------LTGREVECL 194
             +   + R  L  + LL +    +         +D               LT RE E L
Sbjct: 43  LRRPERLTRAALGAVTLLRSLGVRIELPSGELPTRDLPSALSRPKPSGTLTLTDREREVL 102

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++EGK++ EI   L ++ +T+  +   + RK   + R+ A++   R  ++
Sbjct: 103 GGMAEGKSNAEIGRELFVTEDTIKTHARRLFRKLDARDRAHAVSQGFRLELL 154


>gi|238062419|ref|ZP_04607128.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237884230|gb|EEP73058.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 150

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 3/123 (2%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +       A +  G+ ++     ++          L    A   +       + 
Sbjct: 25  RAGASGFLLKDTPPAELLAGIRVVAAGEGLLAPTVTRR---LIDEFARRPEPARPLPRRL 81

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T RE E L  I+ G ++ E+A  L +S  TV  ++  ++ K A + R+  +  A   
Sbjct: 82  EGVTEREREVLMLIARGLSNAELAEQLSLSLPTVKTHVGRLLTKLAVRDRAQLVIVAYET 141

Query: 244 NIV 246
            +V
Sbjct: 142 GLV 144


>gi|291300770|ref|YP_003512048.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569990|gb|ADD42955.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 233

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E +  +++G T+DEIA  + IS  T   +I   M KTA + R+  +  A  + 
Sbjct: 154 DLTNREREAVALVAQGLTNDEIADHMAISPMTAKTHINRAMAKTAARDRAQLVVLAYESG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|209965864|ref|YP_002298779.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
 gi|209959330|gb|ACI99966.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
          Length = 205

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +       D         T RE E L ++ +G ++ EIA  L +   TV  ++  + RK 
Sbjct: 127 EGAAAPEPDSQLAGGASFTRREREVLDFLLKGCSNKEIARALSLEEVTVKLHVRGLCRKL 186

Query: 229 ATKTRSGAIAYAVRNNI 245
             K R+ A   AV   +
Sbjct: 187 GAKNRTQAAMRAVEMGL 203


>gi|160938544|ref|ZP_02085898.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438531|gb|EDP16289.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC
           BAA-613]
          Length = 211

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  ++ G  + EIA  L ++  TV N I+ ++ K   K R+    +AV++N
Sbjct: 149 DLTPRERDIMRLVARGMDNREIAGALFLAEGTVRNNISRLLEKLKLKDRTQLAVFAVKHN 208

Query: 245 I 245
           +
Sbjct: 209 L 209


>gi|118471878|ref|YP_884521.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173165|gb|ABK74061.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 216

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPEN 119
           +   D   +     ++    P   +    + + D       V++        +     E+
Sbjct: 37  VAEADNGADAL--ELIKVHRPAVALLDYRMPQLDGAQVAAAVVRDELPTRVLLVSAHDES 94

Query: 120 ITPPAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
               + +      + S     + +   ++       +I         L A     + +  
Sbjct: 95  AIVYSALQQGAAGFLSKESTRSELVSAVLSCAKGRDVITP------HLAAGLAGEIRRRN 148

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        L+ RE E L  I++G++   +A  L ++ +TV  ++  +  K     R+ A
Sbjct: 149 EPDVPV---LSPREREVLNLIAQGRSIPAMAKELYLAPSTVKTHVQRLYEKLGVSDRAAA 205

Query: 237 IAYAVRNNIV 246
           +A A+R +++
Sbjct: 206 VAEAMRRHLL 215


>gi|116696235|ref|YP_841811.1| response regulator [Ralstonia eutropha H16]
 gi|113530734|emb|CAJ97081.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 224

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 72/217 (33%), Gaps = 29/217 (13%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLP 117
           +  L+V  D     +L   V    P  +V     S  +    + Q +P  L C +     
Sbjct: 5   TSVLIVEDDPAALSRLVQAVEMHAPATVVAGCTASAAEALAWLAQHQPDVLLCDLGLPDG 64

Query: 118 ENITPPAGMDNRYCSLTF--------------DVARIRIGLMLLFPKGRIILRD--RLWE 161
             I        RY +                  +    IG +L       I      L  
Sbjct: 65  SGIDVIRAARERYPACDCMVVTVFGDDHHVLASIEAGAIGYLLKDETTDRIAASIGELRA 124

Query: 162 IG-----LLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVI 209
            G     L+A    N  +                  L+ RE E L  IS G T  E A  
Sbjct: 125 GGSPMSPLIARQVVNRLRGAPAEAVARDAAATGAVVLSVRENEILDLISRGYTYAETARY 184

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LG+S +TV ++I +I  K A ++R  A+  A +  ++
Sbjct: 185 LGLSVHTVQSHIKNIYGKLAVRSRGEAVFEAAKLGLL 221


>gi|194467990|ref|ZP_03073976.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
 gi|194452843|gb|EDX41741.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
          Length = 217

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S     G    L+ RE E L  I  G T+ EIA  + IS  TV  +   IM+K    + +
Sbjct: 144 SMHFDLGNYIALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHA 203

Query: 235 GAIAYAVRNNIV 246
             + YAV++ +V
Sbjct: 204 ELLHYAVKHQLV 215


>gi|23577991|ref|NP_702938.1| putative transcriptional regulatory protein [Corynebacterium
           efficiens YS-314]
 gi|259506139|ref|ZP_05749041.1| two component response regulator [Corynebacterium efficiens YS-314]
 gi|23494817|dbj|BAC19780.1| putative transcriptional regulatory protein [Corynebacterium
           efficiens YS-314]
 gi|259166260|gb|EEW50814.1| two component response regulator [Corynebacterium efficiens YS-314]
          Length = 225

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 51  ALTEYVGASHFLLV---------RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
           ALT  +G  H + V           +  Q+  +D  V  D     V  +  ++  K +  
Sbjct: 24  ALTTILGTQHNIDVVATASNGQKAIEAAQQWAIDVAVL-DIQMPYVNGIDAAQAIKQHRE 82

Query: 102 LQRPTELFC-----PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
             +   L        V   L   +      D    +L   + RI  G  +L P+      
Sbjct: 83  STKILMLTTFDSEDLVRRALEVGVQGFLLKDAGPEALIDAINRIYHGASVLSPEVTEY-- 140

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                  ++  ++ +  +           LT RE+E L  +++ +T+ EIA  L I   T
Sbjct: 141 -------VINVFRVSSPQPPSPCDTLFEALTPRELEVLKRVAQAETNAEIANYLHIGSET 193

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  Y++ ++ K   + R G   +A  + IV
Sbjct: 194 VKTYVSRLISKIGVRDRVGLAVWAHTSGIV 223


>gi|149186155|ref|ZP_01864469.1| probable transcriptional regulatory protein, LuxR family protein
           [Erythrobacter sp. SD-21]
 gi|148830186|gb|EDL48623.1| probable transcriptional regulatory protein, LuxR family protein
           [Erythrobacter sp. SD-21]
          Length = 209

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L  P  +  L +    I   A       +       +   L+ RE E L W+SEG+++  
Sbjct: 101 LRLPLQKGRLEETAGRIAAEAKAYGEARRKMIEARNRIASLSPREREVLEWLSEGRSNKM 160

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L IS  TV  + A++M K      + A+   +  ++
Sbjct: 161 IARELHISPRTVEIHRANMMSKLGAHHAAEAVRLRLEAHL 200


>gi|50843473|ref|YP_056700.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289425764|ref|ZP_06427519.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289427938|ref|ZP_06429642.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|50841075|gb|AAT83742.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289153870|gb|EFD02576.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289158821|gb|EFD07021.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|313763833|gb|EFS35197.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313793774|gb|EFS41805.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803088|gb|EFS44296.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808301|gb|EFS46772.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313813848|gb|EFS51562.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313817004|gb|EFS54718.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818081|gb|EFS55795.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820939|gb|EFS58653.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823990|gb|EFS61704.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827075|gb|EFS64789.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829809|gb|EFS67523.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313839286|gb|EFS77000.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916571|gb|EFS80402.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918956|gb|EFS82787.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314920977|gb|EFS84808.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926967|gb|EFS90798.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932382|gb|EFS96213.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956691|gb|EFT00943.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959601|gb|EFT03703.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961786|gb|EFT05887.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964770|gb|EFT08870.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968723|gb|EFT12821.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314979700|gb|EFT23794.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314988252|gb|EFT32343.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990339|gb|EFT34430.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079262|gb|EFT51265.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082275|gb|EFT54251.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083754|gb|EFT55730.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087395|gb|EFT59371.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089812|gb|EFT61788.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315100153|gb|EFT72129.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102475|gb|EFT74451.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315107818|gb|EFT79794.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327326525|gb|EGE68313.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327335184|gb|EGE76894.1| two-component system response regulator [Propionibacterium acnes
           HL097PA1]
 gi|327449654|gb|EGE96308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455799|gb|EGF02454.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456107|gb|EGF02762.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327457944|gb|EGF04599.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757114|gb|EGF70730.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757308|gb|EGF70924.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757492|gb|EGF71108.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|332676424|gb|AEE73240.1| putative two-component response regulator [Propionibacterium acnes
           266]
          Length = 224

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +
Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|15806567|ref|NP_295281.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6459320|gb|AAF11120.1|AE001999_4 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 225

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A      F+S ++       LT +E   L  ++ G+++ +IA   G+S  TV  +++ ++
Sbjct: 142 ARRLVRDFRSPEMRES----LTPKETAVLQLLARGQSNKDIAAEQGVSEATVKTHVSRLL 197

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K    +R+ A  YA++  I
Sbjct: 198 SKLGLDSRTQAALYALKYGI 217


>gi|330836949|ref|YP_004411590.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
 gi|329748852|gb|AEC02208.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
          Length = 299

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A  +A   +   +     + +T RE   +  I+ G+T+ EIA+ L IS NTVNN++A+I 
Sbjct: 219 AGKKAGQPQGITLEMLAPYHITEREFSVIKLIANGRTNKEIAMELNISTNTVNNHVANIF 278

Query: 226 RKTATKTR 233
            KT  ++R
Sbjct: 279 SKTEVRSR 286


>gi|163943040|ref|YP_001647924.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865237|gb|ABY46296.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 200

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 34/65 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 134 WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 193

Query: 240 AVRNN 244
           A    
Sbjct: 194 AEEKG 198


>gi|271961858|ref|YP_003336054.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505033|gb|ACZ83311.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 216

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G +  ++A  L +S  TV N++ + + K     R+  + YA+   +
Sbjct: 154 LTDRETEVLRLVAKGLSYRQVAERLVLSHRTVQNHVQNTLNKLQLHNRAELVRYAIERGL 213


>gi|228997307|ref|ZP_04156929.1| Response regulator receiver [Bacillus mycoides Rock3-17]
 gi|229004932|ref|ZP_04162659.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228756280|gb|EEM05598.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228762399|gb|EEM11324.1| Response regulator receiver [Bacillus mycoides Rock3-17]
          Length = 578

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIG--LLAAYQANMFKS--YDVHWGKDFE 185
            S++  +     G +L   +   ++   RL  +G  +L+   A         +     +E
Sbjct: 458 SSVSEAIEAGAEGYVLKSVQPEELVAAIRLVHLGGTMLSQDVATRLFKEYSPMPKKPPYE 517

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE++ L  + EG    EIA  L +S  TV NY +SI  K     R  A+  A+
Sbjct: 518 LTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQVSGRGEAVKKAL 573


>gi|284030284|ref|YP_003380215.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809577|gb|ADB31416.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL A+ A +  +      +  +LT RE E L  +++G+++ EIA  L +S  TV  ++  
Sbjct: 133 LLDAFAARLPGAAPDPDPRIGQLTDREREVLVEVAKGRSNAEIAGELMVSAATVKAHVGR 192

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R   +  A    +V
Sbjct: 193 ILTKLELRDRVQIVVLAYETGVV 215


>gi|226311034|ref|YP_002770928.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226093982|dbj|BAH42424.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 873

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVI 209
           + IL D      +L  Y   +   ++ H        L+ RE+E L  I +G ++ +IA  
Sbjct: 778 KRILHDATVHR-MLPRYIEKLLAEFEPHHADSLIEPLSERELEILQLIEKGLSNRDIAQQ 836

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L ++ +TV  +  ++  K   + R+ A+A A +  ++
Sbjct: 837 LFLALSTVKGHNRNVFDKLQVQRRTEAVARARQLGLL 873


>gi|222082450|ref|YP_002541815.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727129|gb|ACM30218.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 214

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ELT RE E L  ++ G ++ +I + L +   TV +++  I  K     R+ A 
Sbjct: 151 ELTDRESEVLQLVATGLSNKQIGLKLDLHEKTVKHHMTQIFTKLGVANRTEAA 203


>gi|168184300|ref|ZP_02618964.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Bf]
 gi|237794731|ref|YP_002862283.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           Ba4 str. 657]
 gi|182672663|gb|EDT84624.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Bf]
 gi|229261330|gb|ACQ52363.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Ba4 str. 657]
          Length = 217

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         I  G+        ++  D    I L   Y+  +    D      + L
Sbjct: 100 ASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKEL---NDDDISLKYNL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NNI
Sbjct: 157 TEREINIIRQIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNI 215


>gi|149371877|ref|ZP_01891196.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149355017|gb|EDM43578.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 223

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            G +         S ++       L+ RE+E L  I +  T+ EI   L ISR TV  + 
Sbjct: 133 FGYIKNGANKRNTSINLSGFNQNMLSKRELEVLELICQQFTTVEIGEKLYISRRTVEVHR 192

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +++ KT  K  +G + YA+++N+V
Sbjct: 193 NNLLLKTDVKNVAGLVIYAIQHNLV 217


>gi|330466590|ref|YP_004404333.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328809561|gb|AEB43733.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 212

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 14/130 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +    +       R   L   V R+  G  LL P               +     + 
Sbjct: 91  FAAIMAGASGYVLKQIRGTDLVDAVRRVAAGQSLLDP--------------AITTRVLDR 136

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +S      +   LT +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + 
Sbjct: 137 IRSGVEQPRELQSLTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLER 196

Query: 233 RSGAIAYAVR 242
           R+ A   A R
Sbjct: 197 RTQAAVLATR 206


>gi|271500356|ref|YP_003333381.1| LuxR family two component transcriptional regulator [Dickeya
           dadantii Ech586]
 gi|270343911|gb|ACZ76676.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech586]
          Length = 215

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V              D     L   + +   G M+L      +L   L E          
Sbjct: 94  VISAFKSGADGYLLKDMEPEDLLVALHQAAAGKMVLSDTLTPVLAASLRET--------- 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +S D    +  +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   +
Sbjct: 145 --RSTDTRDIQ--QLTPREKDILKLIAQGLPNKVIARKLTITESTVKVHVKHLLKKMKLR 200

Query: 232 TRSGAIAYAVRNNI 245
           +R  A  + V+  I
Sbjct: 201 SRVEAAVWVVQEKI 214


>gi|226304145|ref|YP_002764103.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183260|dbj|BAH31364.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 217

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 12/203 (5%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
             + + + A+  ++V  +     ++ + V+   P  ++  + ++         +  T   
Sbjct: 20  RGMKDILEAAPDIVVVAEAEDGDQVAAKVTRFRPHVVLMDLKMARVGGLEATRELMTMSN 79

Query: 110 CPVFHTLP----ENITPPAGMDNRYCSLTFDVARIRI--GLMLLFPKGRIILRDRLWEIG 163
            P    +     +++   A     +  L+ D A       + ++     +   D L  I 
Sbjct: 80  PPKVIAMTAFDVDDMVVQAVEAGAHSFLSKDAAPQAFQQAVRVVASDHSLFSCDSLRAI- 138

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                 A+  +           LT RE E LT ++ G  +  IA  L +   TV  +I+S
Sbjct: 139 -----VASSPRRQAPDQTPLASLTEREREVLTILATGAANSVIAERLYLGETTVKTHISS 193

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +  K     R  A   A R  +V
Sbjct: 194 LFAKLGVPNRVSASLIAFRCGLV 216


>gi|328913398|gb|AEB64994.1| Uncharacterized transcriptional regulatory protein yxjL [Bacillus
           amyloliquefaciens LL3]
          Length = 225

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 13/168 (7%)

Query: 79  SSDWPFDL----VRCMALSEKDKYYNVLQRP--TELFCPVFHTLPENITPPAGMDNRYCS 132
             + P D+    VR   ++  +    + +      +    F      +         Y  
Sbjct: 54  CKNNPVDIALLDVRMPVMNGVEAAKRIAEETDTKPMILTTFDDDEYILEAIKNGAKGYLL 113

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREV 191
              +  RIR  +  +F    I+    L +I        ++F+  +  H   + + T RE+
Sbjct: 114 KNTEPERIRDAIKSVFNGHSILQDTVLDKIK------DSLFRPAEAAHQIDESQFTEREL 167

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             ++ I++G ++ EI+  L IS  T  NYI+SI+ KT  + R+    Y
Sbjct: 168 SIMSLIAKGFSNREISKQLFISEGTTANYISSILGKTGLEHRTQIAIY 215


>gi|291485935|dbj|BAI87010.1| hypothetical protein BSNT_05150 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 200

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L   + GKT+ +I + L +S+ TV NYI+ I++K   K R+ A + A  
Sbjct: 137 ENPLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLHAKNRTEAASIAEE 196

Query: 243 NNIV 246
              +
Sbjct: 197 KGWI 200


>gi|239979679|ref|ZP_04702203.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 281

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ REVE +  I+ G ++ +IA    IS  TV N+I  I  K     RS AIA
Sbjct: 215 LSSREVEVMELIASGMSNQQIAATCFISEKTVKNHINRIFAKLHAPNRSAAIA 267


>gi|229591820|ref|YP_002873939.1| putative response regulator [Pseudomonas fluorescens SBW25]
 gi|229363686|emb|CAY51054.1| putative response regulator [Pseudomonas fluorescens SBW25]
          Length = 219

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 17/193 (8%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL---------FCPVFHTL 116
           + +  E    + +   +   L   + L    K+   L    +L              HT 
Sbjct: 28  YTVIGEANDGAQLLEQFSALLPDIVLLDLSMKHTGGLDALQQLKRAYPKSKVLILSMHTD 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMF 173
           PE I            L    A      +L        L   +        L   Q  + 
Sbjct: 88  PELIMCALESGAHGYLLKDTTANELEHALLALRNNERYLSPAIAHTVINQALVRSQGPIT 147

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +   H      LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++      
Sbjct: 148 PAGHSH-----NLTARQLEILRLIVRGKSTREIAHGLGLSIKTVEAHRSQIMKRLQIFDV 202

Query: 234 SGAIAYAVRNNIV 246
           +G + +AVR  I+
Sbjct: 203 AGLVLFAVREQII 215


>gi|315618449|gb|EFU99036.1| bacterial regulatory s, luxR family protein [Escherichia coli 3431]
          Length = 185

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 127 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 178


>gi|229589739|ref|YP_002871858.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361605|emb|CAY48483.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 218

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ + L  I+ GKT+ EIA  LGIS  TV  +++++ +     TR+ A A
Sbjct: 149 LTARQKQVLGLIAAGKTNKEIARQLGISPFTVRIHVSTLFKTLGVPTRAAAAA 201


>gi|256396759|ref|YP_003118323.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362985|gb|ACU76482.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 219

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  ++ G ++ +I   L +S  TV  +++ +M K     R  A        
Sbjct: 155 ELTPRERDVLAELARGLSNAQIGKSLFLSEATVKAHVSRVMAKLGVANRVQAALVGRDAG 214

Query: 245 IV 246
           ++
Sbjct: 215 LL 216


>gi|28870687|ref|NP_793306.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213969014|ref|ZP_03397154.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301385424|ref|ZP_07233842.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060502|ref|ZP_07252043.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|28853935|gb|AAO57001.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213926313|gb|EEB59868.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|331015804|gb|EGH95860.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 220

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 1/139 (0%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +     HT P+ I        R   L    A      +      +  L   +    +L  
Sbjct: 79  VLILSMHTDPDMIIRALDAGARGYLLKDTTATELEQALEALRNDQRYLSPAIAHT-VLER 137

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                         + + LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++
Sbjct: 138 AVHGTRAERARAARERYNLTARQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKR 197

Query: 228 TATKTRSGAIAYAVRNNIV 246
                 +G + + VR  I+
Sbjct: 198 LQIFDVAGLVLFCVRERII 216


>gi|304413627|ref|ZP_07395071.1| DNA-binding HTH domain-containing protein invovled in quorum
           sensing [Candidatus Regiella insecticola LSR1]
 gi|304283718|gb|EFL92112.1| DNA-binding HTH domain-containing protein invovled in quorum
           sensing [Candidatus Regiella insecticola LSR1]
          Length = 252

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L++ Y+            K  + + RE E L W S GKT  EIA+I GI   TV  ++ +
Sbjct: 167 LISLYKETHGAVCKNSESKKEKFSSRENEVLYWFSMGKTYSEIAIIFGIKLGTVKFHMGN 226

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I++K        AI     + ++
Sbjct: 227 IVKKLGVLNAKHAIRLGTESQLI 249


>gi|218509885|ref|ZP_03507763.1| LuxR family transcriptional regulator [Rhizobium etli Brasil 5]
          Length = 49

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/49 (83%), Positives = 47/49 (95%)

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 1   AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 49


>gi|254476945|ref|ZP_05090331.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
 gi|214031188|gb|EEB72023.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
          Length = 214

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 7/139 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML----LFPKGRIILRDRLWEIGLLAA 167
           +    P+       M +    ++  ++   +G +L         + I      E  L   
Sbjct: 72  ILEEAPKTRILILSMHDSPEYISSALSHGAMGYVLKDVPTEEIRQAIDAVMSGETYLCTG 131

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            + ++    +        LTGRE   L  +++GK++ ++A+ L IS  TV  +  +I RK
Sbjct: 132 AEGSLKPKDNPDREA---LTGREQTILLELAQGKSNKDVALALDISVRTVETHRKNIKRK 188

Query: 228 TATKTRSGAIAYAVRNNIV 246
               + +G   YA+ + ++
Sbjct: 189 LGISSTAGLTRYALEHGVL 207


>gi|312143766|ref|YP_003995212.1| transcriptional regulator, LuxR family [Halanaerobium sp.
           'sapolanicus']
 gi|311904417|gb|ADQ14858.1| transcriptional regulator, LuxR family [Halanaerobium sp.
           'sapolanicus']
          Length = 255

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G  + LT RE + L  I +G ++ EIA  L IS NTV  +I+ +  K    +R   I
Sbjct: 193 GNQYNLTDREKQVLKLIIQGMSNQEIAAELFISINTVKKHISHLFNKCKVSSRIELI 249


>gi|298242293|ref|ZP_06966100.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555347|gb|EFH89211.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 197

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +  G ++ E A  L IS  T+ +++  I  K   + R+ A+  A+   +
Sbjct: 131 LSERELEVLALVGRGASNKEAARSLFISEATIKSHLLRIFGKLGVEDRTAAVTVALEKGM 190

Query: 246 V 246
           +
Sbjct: 191 L 191


>gi|297162410|gb|ADI12122.1| transcriptional regulator, LuxR family protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 166

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L  ++EG  + +IA+ L  S  T+ N + ++M +   + RS A+AYA+R  +
Sbjct: 106 LAAREIEVLRLVAEGYDTADIAMKLSYSERTIKNVLHAVMTRLNLRNRSHAVAYALRQGL 165

Query: 246 V 246
           +
Sbjct: 166 I 166


>gi|149181561|ref|ZP_01860055.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1]
 gi|148850675|gb|EDL64831.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1]
          Length = 199

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 41/74 (55%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +++  +    +  +  +G+   LT RE+E L  +++GK + EIA  L I   TV NYI++
Sbjct: 116 VMSGKRVYAPELIEDAYGEGNPLTVREIEVLELVADGKNTKEIADELSIKTGTVRNYIST 175

Query: 224 IMRKTATKTRSGAI 237
           I+ K   K R  AI
Sbjct: 176 ILDKLQVKNRIEAI 189


>gi|325963470|ref|YP_004241376.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469557|gb|ADX73242.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 207

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           LL    R    + L+E G+     + + K+      +   L+ +E + LT I +G T+ +
Sbjct: 107 LLAGIRRAAAGESLFEPGVKERIVSGLSKTPTDP--RMEGLSAQEKKVLTLIGQGLTNRQ 164

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I   L ++  TV NY++SI+ K   + R+ A  Y  R+ 
Sbjct: 165 IGEELFLAEKTVKNYVSSILAKLGFERRTQAAVYVTRSG 203


>gi|319942475|ref|ZP_08016786.1| hypothetical protein HMPREF9464_02005 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803948|gb|EFW00864.1| hypothetical protein HMPREF9464_02005 [Sutterella wadsworthensis
           3_1_45B]
          Length = 243

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 26/224 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           R I +     + +    +T+ + ASH  F ++      +  L   + S  P  LV  +  
Sbjct: 4   RQIRVLVVDEYPLFRKGITDVL-ASHPDFQVIGATADDKTALS--LLSLKPDLLVLDLDA 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG--LMLLFPK 150
                +      PT+L   V + LP   T           +     R+     ++     
Sbjct: 61  ---QGFS-----PTDLLSEVKYRLPSCRTLMLLNKAESSQVLMQAIRLDANGFILRTVST 112

Query: 151 GRIILRDRLWEIG-------LLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISE 199
              I + +L   G       + AA   ++         KD      LT RE E L  ++ 
Sbjct: 113 DEFIDQLKLVHSGGMAASDKITAALADHLRTRVQKKPAKDPSITQLLTNREYEVLCCVAS 172

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           G  + EIA +L I+  TV  ++  +++K   ++R  A  +A  +
Sbjct: 173 GLANREIAQVLKITDGTVKVHVKHLLKKLKFRSRVEAAVWASEH 216


>gi|312138951|ref|YP_004006287.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311888290|emb|CBH47602.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 214

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 39/80 (48%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A ++     +     G   ELT +E   L  + EG T+ +IA  + ++  TV NY++ ++
Sbjct: 123 AGHEIPFPVTPTRQPGAPGELTAQERRLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLL 182

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K   + R+ A   A R+ +
Sbjct: 183 EKLGVERRAQAAVLAARSGL 202


>gi|291545304|emb|CBL18412.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 206

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 38/74 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            + +S D        ++ RE++ +  I+ G ++ EIA  L +S  TV NY++SI+ K   
Sbjct: 133 ELLQSSDGFDYASRNISERELDIIRLIANGYSNKEIAAELFLSEGTVRNYLSSILDKLQL 192

Query: 231 KTRSGAIAYAVRNN 244
           + R+    +  ++ 
Sbjct: 193 RDRTQVAVFYYQHK 206


>gi|254500296|ref|ZP_05112447.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222436367|gb|EEE43046.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 246

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 26/165 (15%)

Query: 89  CMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            + +     +  ++  R      PV                 + S  F      I ++  
Sbjct: 79  DLTMPGMRGFSGLMYLRAQHTGVPVVVVSANEDPQAIRKAMEFGSSGFIPKSHGIEVI-- 136

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----------LTGREVECLTWI 197
                   R+ + E+ L      N++   DV    D            LT ++V  L  +
Sbjct: 137 --------REAIAEVML-----GNVWTPPDVDLSADDGSGDLVQRLSTLTPQQVRVLMML 183

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  A +
Sbjct: 184 SEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAASK 228


>gi|184153602|ref|YP_001841943.1| two component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227364675|ref|ZP_03848730.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|325682211|ref|ZP_08161728.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
 gi|183224946|dbj|BAG25463.1| two component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227070285|gb|EEI08653.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|324978050|gb|EGC15000.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
          Length = 217

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    I+ G ++ EI+  + IS  TV  + A+I RK     R   + YA+ +++
Sbjct: 155 LSKREKEVFPLIALGYSNKEISQKMFISTKTVEAHKANISRKLHLHGRVELVQYAIHHHL 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|331267046|ref|YP_004326676.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|326683718|emb|CBZ01336.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 199

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIATESG 197


>gi|239986838|ref|ZP_04707502.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 215

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G T+ EIA  L +   T   ++A+++ KT  + R+ A+  A  +  
Sbjct: 152 LTDREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESGF 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|258651303|ref|YP_003200459.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258554528|gb|ACV77470.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 933

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +  ELT RE+E L  I+ G+T+ +IA    +S  TV ++  SI RK   + R+ A+A 
Sbjct: 862 RDRLHELTARELEILAAIASGRTNAQIATDFFLSTKTVMHHSVSIYRKLEVRGRAEAVAL 921

Query: 240 AVRNNIV 246
           A R  ++
Sbjct: 922 AYRTGLL 928


>gi|254488074|ref|ZP_05101279.1| two component response regulator [Roseobacter sp. GAI101]
 gi|214044943|gb|EEB85581.1| two component response regulator [Roseobacter sp. GAI101]
          Length = 218

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 17/163 (10%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAG-MDNRYCSLTFDVARIRIG 143
           +    +        +L+R       +   H  PE I+         Y         I++ 
Sbjct: 63  LNMPEIGGLSATEIILERRPGTRIVILSMHDNPEYISSALSHGAMGYLLKDVPTDEIKLA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    +           L    Q ++    D        LT RE   L  +++G+++
Sbjct: 123 IDTVMQGAQY----------LCTGAQGSLQPKDDERES----LTEREQTILLQLAQGQSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 169 KEVALTLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGVL 211


>gi|62249408|gb|AAX77679.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
 gi|84620011|gb|ABC59304.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum]
          Length = 242

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M +S      K+   + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K   
Sbjct: 164 EMIESKKQLNNKEI-FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 231 KTRSGAIAYAVRNNIV 246
                AI   V   ++
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|315646876|ref|ZP_07899991.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Paenibacillus vortex V453]
 gi|315277806|gb|EFU41130.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Paenibacillus vortex V453]
          Length = 100

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   T RE+E L  I EG +++EIA +L IS  TV  YI +I +K   K R  A+     
Sbjct: 32  EIHFTKRELELLVLIMEGSSNEEIAQMLMISTGTVKRYIHNIYQKLEVKNRVQAVKKIKE 91

Query: 243 NNIV 246
           N+++
Sbjct: 92  NHLI 95


>gi|288919617|ref|ZP_06413946.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349015|gb|EFC83263.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 233

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 67/182 (36%), Gaps = 18/182 (9%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPV-------FHTLPENITPPA 124
           +V    P  ++  + + E D      Q     R      PV       F+      T   
Sbjct: 58  LVDDLRPDVVLMDIRMPEMDGVEATRQIFAPARVARRTKPVRLIMLTTFNLDDRAATAIR 117

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +       A++R  +  +     ++    L       +   + F++         
Sbjct: 118 YGASGFLLKDTTPAQLRDAIRTVHTGNAVLAPRDL------TSLLDHEFRAPAQPPAAFG 171

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTG+E E    +  G ++ EIA ++  S +TV  ++ +I+RK A + R   + +A  + 
Sbjct: 172 SLTGKEREVFFAVVRGLSNTEIARLVFASESTVKTHVGAILRKLALRDRVQIVVFAYEHG 231

Query: 245 IV 246
           +V
Sbjct: 232 VV 233


>gi|284041837|ref|YP_003392177.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946058|gb|ADB48802.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 49/156 (31%), Gaps = 2/156 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+   +   +   P  +    FH               +         +   + ++   
Sbjct: 62  GLAATRELAALAAPPRVIVLTTFHLDEYVHDALRAGAAGFLLKDTPPRELLHAIRVVAGG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++         L+  + +       +   +   LT RE E L  ++EG ++ E    L
Sbjct: 122 EAMLSPVVTRR--LIETFASGRSAQGALARERLRRLTPREREVLALVAEGCSNAEAGRRL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  TV  +++ ++ K     R      A    ++
Sbjct: 180 QMSEATVKTHVSRLLDKLEAANRVQVALVAFDAGLL 215


>gi|302559865|ref|ZP_07312207.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477483|gb|EFL40576.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 228

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 14/167 (8%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +      R   L    F              + +         +  G+  +   
Sbjct: 62  GIEATRRIVATGDRTRVLILTTFDLDEYAYAGLRAGASGFLVKDAQPEELLSGIRSVASG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----------LTGREVECLTWISE 199
             ++         LL AY A    +       D             LT RE E LT +  
Sbjct: 122 DAVVAPSLTRR--LLDAY-ARHLPTPGPDSDSDAPTAGHTDARLDALTEREREILTVVGR 178

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ EIA  L ++ +TV  ++  I+ KT ++ R  A+  A    +V
Sbjct: 179 GWTNTEIATRLHLAESTVKTHVGRILAKTGSRDRIQAVILAYDTKLV 225


>gi|94968001|ref|YP_590049.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550051|gb|ABF39975.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 227

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K+F LT RE+E L  I  G T+ EIA    +S +TV +++ +I  K    +R     +A
Sbjct: 158 AKNFGLTKREMEILGTIVAGFTNKEIAKKFNLSEDTVKHHLTNIFDKVGVSSRLELALFA 217

Query: 241 VRNNI 245
           +   +
Sbjct: 218 INQRL 222


>gi|332996217|gb|EGK15844.1| transcriptional regulator, LuxR family [Shigella flexneri VA-6]
          Length = 196

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 138 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 189


>gi|308380381|ref|ZP_07669177.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu011]
 gi|308361672|gb|EFP50523.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu011]
          Length = 1199

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 1132 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 1190


>gi|16331921|ref|NP_442649.1| protein kinase [Synechocystis sp. PCC 6803]
 gi|1001838|dbj|BAA10720.1| putative protein kinase [Synechocystis sp. PCC 6803]
          Length = 369

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E ++ +++G    +IA  L IS +TV  ++   + K   K R  AI  A     
Sbjct: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQATVQGF 368

Query: 246 V 246
           +
Sbjct: 369 I 369


>gi|320333054|ref|YP_004169765.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754343|gb|ADV66100.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 216

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 4/135 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    F     ++        R   +     R   G++    +G + +   L   GLL  
Sbjct: 80  VVMLTFSEDEADVLAALKAGARGYIIKGVTGRELRGVIRAVSQGEVSITPMLAS-GLLYE 138

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                    +   G    LT RE + L  ++ G+++ EIA  L ++  TV +Y+ ++++K
Sbjct: 139 LA---RPEREPPGGLMTTLTARERQILEGVAAGRSNKEIARELELTEKTVKHYMTNVLQK 195

Query: 228 TATKTRSGAIAYAVR 242
              + R  A   A R
Sbjct: 196 LQVRNRVEAALLAQR 210


>gi|282881294|ref|ZP_06289978.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS
           5C-B1]
 gi|281304839|gb|EFA96915.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS
           5C-B1]
          Length = 221

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVIL 210
           +  D L    L+    A+    +     K  +   L+ RE+E L+ I +G  + EIA  L
Sbjct: 121 VPEDELVRSVLMLEQHAHGTGQHLPPLPKVLKKKVLSDREIEVLSLIVQGYINKEIADRL 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I   TV  +  +IM K   K+ S    YAV +  V
Sbjct: 181 NIGMTTVITHRKNIMEKLGVKSVSALTIYAVTHGYV 216


>gi|149914675|ref|ZP_01903205.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b]
 gi|149811468|gb|EDM71303.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b]
          Length = 224

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE E L  + +G T+ +I+  LG+S NTV  Y+ +I +K    +R  AIA 
Sbjct: 165 LSRREHEILALLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGAAIAK 218


>gi|238783332|ref|ZP_04627356.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970]
 gi|238715755|gb|EEQ07743.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970]
          Length = 238

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  LT RE+  L +  +G TS EIA  + IS++TV+ ++ +I++K   K +  AI+ A+
Sbjct: 174 NNITLTKRELMILMFSVDGMTSHEIAGKIFISKSTVDFHMLNIIKKLNCKNKFQAISKAL 233

Query: 242 RNNIV 246
              ++
Sbjct: 234 IMGLI 238


>gi|300779182|ref|ZP_07089040.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
 gi|300504692|gb|EFK35832.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
          Length = 212

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++GKTS+ IA  L +S  TV+ +  ++++K   K  +  I  A++  +
Sbjct: 150 LTKREKQILQLVAQGKTSNMIAEELFLSPLTVDTHRKNLLQKFHAKNSTELINRAMQQGM 209

Query: 246 V 246
           +
Sbjct: 210 I 210


>gi|308232152|ref|ZP_07415096.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu001]
 gi|308371029|ref|ZP_07423604.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu003]
 gi|308373427|ref|ZP_07432269.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu005]
 gi|308374593|ref|ZP_07436663.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu006]
 gi|308214848|gb|EFO74247.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu001]
 gi|308330043|gb|EFP18894.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu003]
 gi|308337687|gb|EFP26538.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu005]
 gi|308341368|gb|EFP30219.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu006]
          Length = 1109

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 1042 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 1100


>gi|37521368|ref|NP_924745.1| transcriptional regulator [Gloeobacter violaceus PCC 7421]
 gi|35212365|dbj|BAC89740.1| gsr1799 [Gloeobacter violaceus PCC 7421]
          Length = 74

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE +    I+ G ++ EIA  L IS  TV  +I  I+ +   + R+ A   A
Sbjct: 13  LTPRERQVSGLIARGASNAEIARSLYISEGTVKFHITKILSRLGVRDRTQAAILA 67


>gi|88859107|ref|ZP_01133748.1| putative csg operon transcription regulator (LuxR family) protein
           [Pseudoalteromonas tunicata D2]
 gi|88819333|gb|EAR29147.1| putative csg operon transcription regulator (LuxR family) protein
           [Pseudoalteromonas tunicata D2]
          Length = 207

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q   ++S D       +LT RE   +  +S+G  + ++A  L IS +TV  ++ S  RKT
Sbjct: 121 QQPKYQSQDESSMSLEKLTNRERTIIRLVSQGAKNKDVAEKLHISDHTVKTHLYSAFRKT 180

Query: 229 ATKTRSGAIAYA 240
             + R     +A
Sbjct: 181 NARNRIELANWA 192


>gi|332763477|gb|EGJ93716.1| putative regulator [Shigella flexneri 2930-71]
          Length = 196

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 138 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 189


>gi|300859114|ref|YP_003784097.1| LuxR family transcriptional regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686568|gb|ADK29490.1| LuxR-family transcription regulator [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 279

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 15/203 (7%)

Query: 56  VGASHFL---LVRWDL---FQEQKLDSIVSSDWP-FDLVRCMALSEKDKYYNVLQRPTEL 108
           VG S ++   ++  DL    Q++ L SIV+        VR +          +  +  E 
Sbjct: 75  VGVSDYMRANVISHDLDPVIQDEGLHSIVAVPVIVHREVRGVLYVGVHSPVRLGDKVIEE 134

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI------GLMLLFPKGRIILRDRLWEI 162
                  L +++   A    R   L     + R+        +        +L +R+   
Sbjct: 135 VTMTARVLEQDLAIIA-ASRRSEGLRGAAKQGRMMNGAEWEQIRATHSKLRMLANRIDHE 193

Query: 163 GLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            L    +    +    VH  +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+
Sbjct: 194 ELRQELEELCDQMVAPVHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYL 253

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
            S+MRK    TR  A+  A R  
Sbjct: 254 RSVMRKLGAHTRYEAVNAARRIG 276


>gi|104782747|ref|YP_609245.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95111734|emb|CAK16458.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 216

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 13/220 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++ +D        + +L   +    + ++       Q LD ++  + P  ++  ++
Sbjct: 1   MTCRLLLVDDHSLIRAGVRSLVSDI--PGYAVIGEAEDGNQLLDHVLRLN-PDIVLLDIS 57

Query: 92  LSEKDKYYNVLQRPT-----ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +        + Q        ++     HT P+ I            L           + 
Sbjct: 58  MRSTSGLDALTQLRANGCTCKVLILSMHTDPDLIMRALESGAHGYLLKDTTGSELEQALT 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                   L   +                          LT R++E L  I  GK++ EI
Sbjct: 118 ALRNDERYLSPAIAH-----TVINQALIRAQSGNDYRQHLTARQLEILRLIVRGKSTREI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  LG+S  TV  + + IM++      +G + +AVR  I+
Sbjct: 173 AGGLGLSIKTVETHRSQIMKRLQIYDVAGLVLFAVRERII 212


>gi|302206808|gb|ADL11150.1| Hypothetical protein CpC231_1689 [Corynebacterium
           pseudotuberculosis C231]
 gi|308277060|gb|ADO26959.1| Hypothetical protein CpI19_1705 [Corynebacterium pseudotuberculosis
           I19]
          Length = 279

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 15/203 (7%)

Query: 56  VGASHFL---LVRWDL---FQEQKLDSIVSSDWP-FDLVRCMALSEKDKYYNVLQRPTEL 108
           VG S ++   ++  DL    Q++ L SIV+        VR +          +  +  E 
Sbjct: 75  VGVSDYMRANVISHDLDPVIQDEGLHSIVAVPVIVHREVRGVLYVGVHSPVRLGDKVIEE 134

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI------GLMLLFPKGRIILRDRLWEI 162
                  L +++   A    R   L     + R+        +        +L +R+   
Sbjct: 135 VTMTARVLEQDLAIIA-ASRRSEGLRGAAKQGRMINGAEWEQIRATHSKLRMLANRIDHE 193

Query: 163 GLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            L    +    +    VH  +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+
Sbjct: 194 ELRQELEELCDQMVAPVHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYL 253

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
            S+MRK    TR  A+  A R  
Sbjct: 254 RSVMRKLGAHTRYEAVNAARRIG 276


>gi|268609438|ref|ZP_06143165.1| two component LuxR family transcriptional regulator [Ruminococcus
           flavefaciens FD-1]
          Length = 209

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 35/56 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + ++ +E E L  ++EGK++ EI+  L +S  TV NYI+S++ K + + R+    +
Sbjct: 146 YGISDKEKEILELVAEGKSNKEISSELFLSEGTVRNYISSLLDKLSLRDRTQLAVF 201


>gi|259419174|ref|ZP_05743091.1| transcriptional regulator AhyR/asaR family [Silicibacter sp.
           TrichCH4B]
 gi|259345396|gb|EEW57250.1| transcriptional regulator AhyR/asaR family [Silicibacter sp.
           TrichCH4B]
          Length = 229

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 67/184 (36%), Gaps = 17/184 (9%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L R D  Q +    +    W +    C  + E     +V +    L      TL   +T 
Sbjct: 62  LYRADPVQRRAAKILNPFVWSYHAEECSVIREDLGQGDVREVRERLLD---WTLGRGMTV 118

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           P  +  R  +        R  +            D L     L A++     S ++   +
Sbjct: 119 PLHLPGRGFATLSAFVEGRADM------------DMLARFA-LQAFELQDRISVELRQAR 165

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE ECL+  + G ++ +IA  L  S + V  ++ +   K   + RS A+A A R
Sbjct: 166 G-PLTLREAECLSHTAAGLSAKQIAHELNRSESMVVKHLQAAASKLGARNRSHAVAIATR 224

Query: 243 NNIV 246
              +
Sbjct: 225 QGWI 228


>gi|239942277|ref|ZP_04694214.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988743|ref|ZP_04709407.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445736|ref|ZP_06585126.1| response regulatory protein [Streptomyces roseosporus NRRL 15998]
 gi|291348683|gb|EFE75587.1| response regulatory protein [Streptomyces roseosporus NRRL 15998]
          Length = 214

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           LF   R   + R      +A+      +S          LT RE + L  +S+G  + +I
Sbjct: 120 LFAAIRSAAQGRTTLSAPVASRVMARMRSP------RPSLTDRERDILAQLSQGLGNRDI 173

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++  I  K    TR+GA++ A    ++
Sbjct: 174 ARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLL 213


>gi|213850302|ref|ZP_03381200.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 217

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   
Sbjct: 139 RERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNV 198

Query: 231 KTRSGAIA 238
           ++R  A  
Sbjct: 199 RSRVAATI 206


>gi|123441372|ref|YP_001005359.1| LuxR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088333|emb|CAL11124.1| LuxR-family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 240

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTEL-FCPVFHTLPENITPPAGMDNRYC----SLTFD 136
            PF     +       +    +      +  V H    N+T  + M ++ C       F 
Sbjct: 77  MPFSWDEKIIFRWPKLFDMAKEYDVFNGYTFVLHDQNNNLTVLSLMTDKDCNEDIEEKFG 136

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             +  I L+L+    R           L + Y+     S      ++   + RE E + W
Sbjct: 137 KDKGNIQLLLMSTHER-----------LTSLYKDLNNTSIFYKVNRNEIFSTRENEIIYW 185

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S GK   EIA+ILGI    V +++  ++RK        AI+ AV   ++
Sbjct: 186 ASVGKAYQEIALILGIKPTAVKHHMGKVVRKLGVTNAKHAISLAVELQLI 235


>gi|116249841|ref|YP_765679.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254489|emb|CAK05563.1| putative GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 260

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L+         L   L++   + A ++N  K   +       LT REV+ L  I +G  
Sbjct: 149 ALLNRLTNKNAQLEPSLYQTKSVDAARSNALK---LRRDSISALTTREVQILDLICKGTQ 205

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  IA  L +S NTV  ++ +I +K   + R+ A + 
Sbjct: 206 NKIIADKLHLSENTVKVHVRNIYKKMNVRNRTEAASR 242


>gi|5639944|gb|AAD45903.1|AF161327_2 response regulator ChrA [Corynebacterium diphtheriae]
          Length = 199

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 18/166 (10%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARI 140
           +V  + +   D              PV       T  + +         Y       + +
Sbjct: 47  VVTDIQMPGTDGITLTRALANAGGPPVLILTTYDTEADILAAVEAGAMGYLLKDAPESAL 106

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++  F   R +  +            AN              L+ RE+E L  + +G
Sbjct: 107 HDAVVATFEGRRTLAPE-----------VANALMQR--VSKPRQALSAREIEILQNLEQG 153

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ ++A  L IS  TV  ++  I  K     R+ AI  A +  ++
Sbjct: 154 LSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199


>gi|15842015|ref|NP_337052.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            CDC1551]
 gi|289746269|ref|ZP_06505647.1| transcriptional regulator, luxR family [Mycobacterium tuberculosis
            02_1987]
 gi|308372247|ref|ZP_07427963.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu004]
 gi|308405230|ref|ZP_07669460.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu012]
 gi|13882292|gb|AAK46866.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis
            CDC1551]
 gi|289686797|gb|EFD54285.1| transcriptional regulator, luxR family [Mycobacterium tuberculosis
            02_1987]
 gi|308333885|gb|EFP22736.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu004]
 gi|308365275|gb|EFP54126.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu012]
 gi|323718928|gb|EGB28079.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            CDC1551A]
          Length = 1113

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 1046 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 1104


>gi|291302034|ref|YP_003513312.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571254|gb|ADD44219.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D     LT  +  +  G   + P     L +R  E          
Sbjct: 90  VFAALRAGASGFLVKDATPAELTGGIRVVAAGDAAVAPGVTRRLIERFAE-------HLP 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +       +   LT RE + L  ++ G+++ EIA ++ +S+ TV  ++  I+ K   +
Sbjct: 143 ATERVPPGDDRLNSLTEREHDVLVQVARGRSNQEIAELIHVSQATVKVHVGRILAKLGLR 202

Query: 232 TRSGAIAYAVRNNIV 246
            R+  I +A  N +V
Sbjct: 203 DRAQVIVFAYENGVV 217


>gi|256827483|ref|YP_003151442.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583626|gb|ACU94760.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 215

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 1/132 (0%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
            +  E +     M  R   +  D+A+I   L        ++  D L   G  +    + F
Sbjct: 83  FSDDEYLVRALKMGARGYLIKQDIAQIAPALRSAMAGMSVLEGDILERTGAFSRSVED-F 141

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  +       LT RE E +  ++EG  + E+A  L +S  TV N+I++I+ K   K R
Sbjct: 142 SADRLRAETFSVLTDREYEVVEAVAEGLDNAEVAQTLYMSEGTVRNHISTILAKLGLKNR 201

Query: 234 SGAIAYAVRNNI 245
           +       R ++
Sbjct: 202 TQIAVRYYRASL 213


>gi|255036722|ref|YP_003087343.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254949478|gb|ACT94178.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 219

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE E L  I +G ++ EI   L IS  TV  +   ++ KT TK+ + A+A+A +
Sbjct: 155 NVALSSREKEVLQLICDGLSTTEIGDKLFISVRTVEGHRLRVLEKTGTKSTAAAVAFAYK 214

Query: 243 NNIV 246
           N ++
Sbjct: 215 NQLL 218


>gi|308175073|ref|YP_003921778.1| hypothetical protein BAMF_3182 [Bacillus amyloliquefaciens DSM 7]
 gi|307607937|emb|CBI44308.1| RBAM_030520 [Bacillus amyloliquefaciens DSM 7]
 gi|328555041|gb|AEB25533.1| hypothetical protein BAMTA208_16905 [Bacillus amyloliquefaciens
           TA208]
          Length = 215

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 13/168 (7%)

Query: 79  SSDWPFDL----VRCMALSEKDKYYNVLQRP--TELFCPVFHTLPENITPPAGMDNRYCS 132
             + P D+    VR   ++  +    + +      +    F      +         Y  
Sbjct: 44  CKNNPVDIALLDVRMPVMNGVEAAKRIAEETDTKPMILTTFDDDEYILEAIKNGAKGYLL 103

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREV 191
              +  RIR  +  +F    I+    L +I        ++F+  +  H   + + T RE+
Sbjct: 104 KNTEPERIRDAIKSVFNGHSILQDTVLDKIK------DSLFRPAEAAHQIDESQFTEREL 157

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             ++ I++G ++ EI+  L IS  T  NYI+SI+ KT  + R+    Y
Sbjct: 158 SIMSLIAKGFSNREISKQLFISEGTTANYISSILGKTGLEHRTQIAIY 205


>gi|294811306|ref|ZP_06769949.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC
           27064]
 gi|294323905|gb|EFG05548.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC
           27064]
          Length = 231

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
            R+G  LL       L D + E+                  G++  LT REVE L   ++
Sbjct: 125 ARVGGFLLKEAPPARLADAVREVSAGKRVIDPQLALAAFDNGEN-PLTPREVEVLRMAAD 183

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G  + EIAV L +S  TV NY+ +I+ K   + R  AI  A  + 
Sbjct: 184 GAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARESG 228


>gi|170726595|ref|YP_001760621.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169811942|gb|ACA86526.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 218

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A     + + +     I   +  +F     +  D +      ++      K Y +    
Sbjct: 95  IAYGAVGFIAKSSSKETIAEAIETVFEGNIYLPADIIRTKSSPSS-----KKEYQLLPEM 149

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              LT R++  L  +++G+ + +IA  L +S  TV ++++SI++K     R  A+ 
Sbjct: 150 LSSLTRRQLMVLKCMTKGEANKQIAYNLNVSETTVKSHVSSILKKLGVSNRVQAVV 205


>gi|320199699|gb|EFW74289.1| Putative regulator [Escherichia coli EC4100B]
          Length = 200

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|317489390|ref|ZP_07947902.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325832371|ref|ZP_08165345.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|316911497|gb|EFV33094.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486007|gb|EGC88462.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 488

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           + +  + LF    +   D + E G   A  Q +  ++   H  +   LT RE E L  + 
Sbjct: 379 LAMVSLFLFKDKTLCGFDAVAEEGAPTAEQQGDALEARCAHVAEAHGLTPRESEILVHLG 438

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +G+T+  I+  L +S NTV  +I SI +K    +R
Sbjct: 439 QGRTARAISEKLVVSENTVKYHIKSIYQKLDVHSR 473


>gi|312972209|ref|ZP_07786383.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
 gi|310334586|gb|EFQ00791.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
          Length = 196

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 138 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 189


>gi|325673773|ref|ZP_08153464.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325555794|gb|EGD25465.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 211

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 39/80 (48%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A ++     +     G   ELT +E   L  + EG T+ +IA  + ++  TV NY++ ++
Sbjct: 120 AGHEIPFPVTPTRQPGAPGELTAQERRLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLL 179

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K   + R+ A   A R+ +
Sbjct: 180 EKLGVERRAQAAVLAARSGL 199


>gi|251798213|ref|YP_003012944.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247545839|gb|ACT02858.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 243

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 22/168 (13%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  +      +   L    F      +         Y     D  +IR  +  ++    +
Sbjct: 65  EATRLLTEQTKAKPLILTTFDDDEYILEAVRSGARGYLLKNNDPEKIRNAIKSVYNDHHV 124

Query: 154 ILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE--------------------LTGREV 191
           +    L +I   LL   Q N     + H G                         T RE+
Sbjct: 125 LQDVVLNKIKSNLLTGVQVNPPTGNETHNGHAVIDPVQPAAVPSSGSDLIDRSLFTEREL 184

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E +  I+ G ++ EI+  L IS  T  NYI SI+ KT  + R+    Y
Sbjct: 185 EIMAQIARGLSNKEISKKLFISEGTTANYITSILNKTGLEHRTQIAIY 232


>gi|170682867|ref|YP_001745790.1| LuxR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|218707149|ref|YP_002414668.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli UMN026]
 gi|293407137|ref|ZP_06651061.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298382887|ref|ZP_06992482.1| HTH-type transcriptional regulator yhjB [Escherichia coli FVEC1302]
 gi|300897310|ref|ZP_07115744.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300936733|ref|ZP_07151631.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|301025850|ref|ZP_07189340.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|170520585|gb|ACB18763.1| transcriptional regulator, LuxR family [Escherichia coli SMS-3-5]
 gi|218434246|emb|CAR15164.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli UMN026]
 gi|284923545|emb|CBG36640.1| transcriptional regulator [Escherichia coli 042]
 gi|291425948|gb|EFE98982.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298276723|gb|EFI18241.1| HTH-type transcriptional regulator yhjB [Escherichia coli FVEC1302]
 gi|300358916|gb|EFJ74786.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300395816|gb|EFJ79354.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|300458148|gb|EFK21641.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
          Length = 200

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|124383175|ref|YP_001025881.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|254194028|ref|ZP_04900460.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254200975|ref|ZP_04907340.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254359059|ref|ZP_04975331.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|147748587|gb|EDK55662.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|148028246|gb|EDK86206.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|169650779|gb|EDS83472.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|261827167|gb|ABM99233.2| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
          Length = 264

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 10/154 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A+ E  + +  L+              + I       + Y         I   +  +   
Sbjct: 112 AMGEILRAHPGLRFVVFTALGSEARAADAI---RFGASGYLLKWCSPDGIVQAIRRVMAG 168

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              I    L E  + +A       S         ELT RE + L  I++G  + EIA +L
Sbjct: 169 RVHIDPS-LDEARVASAAGGRTLASP------VDELTRREKQVLKLIADGMRNREIASLL 221

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IS  TV+ +   +M+K   +  +  I +A R  
Sbjct: 222 NISPKTVDCHRQRLMQKLGARNVATVIHWAYRYG 255


>gi|323167000|gb|EFZ52739.1| bacterial regulatory s, luxR family protein [Shigella sonnei 53G]
          Length = 185

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 127 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 178


>gi|294994407|ref|ZP_06800098.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            210]
 gi|326904100|gb|EGE51033.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            W-148]
          Length = 1137

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 1070 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 1128


>gi|302552462|ref|ZP_07304804.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470080|gb|EFL33173.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 7/161 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +      R   L    F              + +         +  G+  +   
Sbjct: 62  GIEATRRITAAGDRTRILIVTTFDLDEYAYAGLRAGASGFLVKDAQPEELLSGIRAVATG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMF-----KSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             ++         LL AY  ++      ++      +   LT RE E LT I  G T+ E
Sbjct: 122 DAVVAPSLTRR--LLDAYVHHLPTDSAAETPPQEDPRLASLTDREREILTVIGRGWTNTE 179

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA    ++ +TV  ++  I+ KT ++ R  A+  A    +V
Sbjct: 180 IATRFHLAESTVKTHVGRILAKTGSRDRIQAVILAYDTKLV 220


>gi|253798434|ref|YP_003031435.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            KZN 1435]
 gi|289553722|ref|ZP_06442932.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            KZN 605]
 gi|297635092|ref|ZP_06952872.1| transcriptional regulator, luxR-family protein [Mycobacterium
            tuberculosis KZN 4207]
 gi|297732083|ref|ZP_06961201.1| transcriptional regulator, luxR-family protein [Mycobacterium
            tuberculosis KZN R506]
 gi|313659419|ref|ZP_07816299.1| transcriptional regulator, luxR-family protein [Mycobacterium
            tuberculosis KZN V2475]
 gi|253319937|gb|ACT24540.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            KZN 1435]
 gi|289438354|gb|EFD20847.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            KZN 605]
 gi|328458202|gb|AEB03625.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            KZN 4207]
          Length = 1137

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 1070 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 1128


>gi|229589736|ref|YP_002871855.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361602|emb|CAY48480.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 205

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++  Y+++   S++       +LT R+ E    I++GKT+ EIA  L IS  TV  +++
Sbjct: 124 QVVVKYESDESPSFEGDEAMS-KLTSRQREVWHLIAQGKTNKEIAAELQISPYTVRVHVS 182

Query: 223 SIMRKTATKTRS-GAIAYAVR 242
           S++R      R+  A  +A R
Sbjct: 183 SLIRVLNVPNRAVAAARFAGR 203


>gi|121638369|ref|YP_978593.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|224990863|ref|YP_002645550.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Tokyo 172]
 gi|121494017|emb|CAL72495.1| Probable transcriptional regulatory protein (luxR-family)
            [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224773976|dbj|BAH26782.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Tokyo 172]
          Length = 1137

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 1070 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 1128


>gi|110680018|ref|YP_683025.1| transcription regulatory protein degU, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456134|gb|ABG32339.1| transcription regulatory protein degU, putative [Roseobacter
           denitrificans OCh 114]
          Length = 216

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 11/141 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQ 169
           V    P        M +    ++  ++   +G +L     + +  D + +    ++A  Q
Sbjct: 76  VLERRPGTRILILSMHDSAEYISSALSHGAMGYIL-----KDVPTDEIKQAIDAVMAGDQ 130

Query: 170 ANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                +      K+ E    LTGRE   L  +++GK++ ++A  L IS  TV  +  +I 
Sbjct: 131 YLCTGARGSLQPKEGEAREALTGREQTILLQLAQGKSNKDVATALDISVRTVETHRKNIK 190

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    + +G   YA+ + ++
Sbjct: 191 RKLGISSTAGLTRYAMEHGVL 211


>gi|326384821|ref|ZP_08206497.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196483|gb|EGD53681.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 229

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 3/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  L    F           G  + +         +   +  +     ++          
Sbjct: 82  PRILIVTTFDHDEYVFAALRGGASGFLLKDTPPEELLEAVRTVARGDALLAPAVTRR--- 138

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L    A    +          LT RE+E    ++ G ++ EIA  L +   TV  +I  +
Sbjct: 139 LITEFARAPTAPTSRPAVLDVLTERELEVFELVAVGLSNGEIADRLHLGLTTVKTHIGRL 198

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R   +  A    +V
Sbjct: 199 LTKLDARDRVHLVIRAYETGLV 220


>gi|297193677|ref|ZP_06911075.1| two component transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151880|gb|EFH31398.1| two component transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 209

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 10/127 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L    +     D     LT  V  +R G  LL P     L +R    G   A    
Sbjct: 93  VYAALSAGASGFLLKDVTPEHLTAAVRTVRTGDALLAPAITRRLVERFTRRGSDTAALHR 152

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          LT RE+E L  ++ G ++ E+A  L ++  TV  ++A I+ K   +
Sbjct: 153 DLAA----------LTPRELEVLGLLARGLSNAELATRLHLAEATVKTHVARILAKLGLR 202

Query: 232 TRSGAIA 238
            R  A+ 
Sbjct: 203 DRVQAVI 209


>gi|260205795|ref|ZP_05773286.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            K85]
 gi|289575185|ref|ZP_06455412.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            K85]
 gi|289539616|gb|EFD44194.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            K85]
          Length = 1137

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 1070 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 1128


>gi|15609625|ref|NP_217004.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Rv]
 gi|31793667|ref|NP_856160.1| LuxR family transcriptional regulator [Mycobacterium bovis AF2122/97]
 gi|148662323|ref|YP_001283846.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|148823685|ref|YP_001288439.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            F11]
 gi|215404423|ref|ZP_03416604.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            02_1987]
 gi|306804237|ref|ZP_07440905.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu008]
 gi|306808806|ref|ZP_07445474.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu007]
 gi|306968638|ref|ZP_07481299.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu009]
 gi|306972870|ref|ZP_07485531.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu010]
 gi|2791528|emb|CAA16065.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY)
            [Mycobacterium tuberculosis H37Rv]
 gi|31619260|emb|CAD97376.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY)
            [Mycobacterium bovis AF2122/97]
 gi|148506475|gb|ABQ74284.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|148722212|gb|ABR06837.1| hypothetical transcriptional regulatory protein, luxR-family
            [Mycobacterium tuberculosis F11]
 gi|308344853|gb|EFP33704.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu007]
 gi|308349163|gb|EFP38014.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu008]
 gi|308353782|gb|EFP42633.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu009]
 gi|308357727|gb|EFP46578.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
            SUMu010]
          Length = 1137

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 1070 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 1128


>gi|329733822|gb|EGG70146.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU028]
          Length = 218

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          ++    L   V  +  G   +           +     L     N 
Sbjct: 91  FHVLKSGAKGYILKNSPDEQLILAVRTVYQGETYVD----------MKLTTSLVNEFVNQ 140

Query: 173 FKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            ++ +V    D    L+ RE+E L  I++G  + +IA  L +S  TV  +   IM K   
Sbjct: 141 SQTDEVSPSSDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNL 200

Query: 231 KTRSGAIAYAVRNNIV 246
           K++   + YA++  ++
Sbjct: 201 KSKPELVEYALKKKLL 216


>gi|325269083|ref|ZP_08135704.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324988704|gb|EGC20666.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 217

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S    YAV
Sbjct: 148 KNKILSNREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAV 207

Query: 242 RNNIV 246
            +  +
Sbjct: 208 MHGYI 212


>gi|317057055|ref|YP_004105522.1| LuxR family two component transcriptional regulator [Ruminococcus
           albus 7]
 gi|315449324|gb|ADU22888.1| two component transcriptional regulator, LuxR family [Ruminococcus
           albus 7]
          Length = 211

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  ++ G T+ ++A  LGIS NTV +++ S++ KT  ++R+     A    
Sbjct: 144 ELTERELEILRIVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRTELAIKARVLG 203

Query: 245 I 245
           I
Sbjct: 204 I 204


>gi|326776576|ref|ZP_08235841.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656909|gb|EGE41755.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 220

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 5/168 (2%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRYCSLTFDV 137
           P  ++  + +   D      Q   E    V      ++            + +     D 
Sbjct: 49  PDLVLMDVQMPRLDGVAATRQVVGEELADVLVLTTFDLDEYVFGALRAGASGFLLKNTDA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     +I       +    A  +               LT RE E L  +
Sbjct: 109 RDLLEAVRTVARGEGLIAPAVTRRLIAEFAGASPRHGRRTADPAVLDALTRREREVLGCL 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++ EIA+ L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 169 GEGLSNAEIALRLSMAEATVKTHVSRVLGKLELRSRVQAAVLAQELGI 216


>gi|239985867|ref|ZP_04706531.1| two component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 221

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D     +  +A + +      L     +    F              + +     
Sbjct: 49  DIVLMDIRMPRLDGLAATRRITGDPELNDVKVVMLTTFELDEYVFEALRNGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+A + A   +           LT RE E + 
Sbjct: 109 EPEELLRAVRAVVGGDALLSPGVTRR--LIAEFAARSKEP--TAAASLALLTEREREVMA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 165 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|325068174|ref|ZP_08126847.1| Regulatory protein, LuxR:Response regulator receiver [Actinomyces
           oris K20]
          Length = 237

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y +       +   +  +          RL    +L
Sbjct: 100 RFLALSVSDASDDVVGVIRAGARGYVTKAISTEDLAQAVRRVAAGDAAFSP-RLAGF-VL 157

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ A   +        D  L+ RE E +  I+ G T  E A  L IS  TV  ++++++
Sbjct: 158 DAFGAGAGEVAVADTELD-RLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVL 216

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R+    +AV   IV
Sbjct: 217 RKLQLSNRNELTRWAVARRIV 237


>gi|304406148|ref|ZP_07387805.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344732|gb|EFM10569.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 221

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 36/75 (48%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F+  D    ++  +  +E   L  ++ G ++ EIA  L IS+ TV   +  I  K   +
Sbjct: 138 RFQQTDGKTVEEVSINEKEQLILREVASGGSNKEIAAKLYISQRTVEYNLTRIFEKLGVR 197

Query: 232 TRSGAIAYAVRNNIV 246
           +RS AI  A R  ++
Sbjct: 198 SRSEAIVEANRLGLI 212


>gi|300783203|ref|YP_003763494.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792717|gb|ADJ43092.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 8/187 (4%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTE----LFCPVFHTLPEN 119
            +    +   S V +  P  ++  + +   D       ++R       +    F      
Sbjct: 31  AEAADGRSAVSQVLATRPDVVLLDIRMPGLDGLGAAAEIRRLLPATGVIMLTTFGEDEYI 90

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                     +   + D   +  G+  +      +       +  +A             
Sbjct: 91  ERALGLGAGGFLLKSGDPRELLSGIHAVAGGAAFLSPKVAQRV--IARLSGGQLARAAAA 148

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   LT RE E LT +  G ++ +IA  + +   TV  ++++I+ +   K R  A   
Sbjct: 149 RERIAALTPREREVLTLLGSGLSNADIAAKMFVVEGTVKAHVSTILNRLGAKNRVQAAIT 208

Query: 240 AVRNNIV 246
           A    +V
Sbjct: 209 AYEAGLV 215


>gi|291437530|ref|ZP_06576920.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340425|gb|EFE67381.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 268

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            F+L+ RE E +  I+ G  + +IA    IS  TV N+I  I  K  + +RS A A 
Sbjct: 199 RFQLSTREAEIMDLIASGMNNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAAK 255


>gi|288917724|ref|ZP_06412087.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350939|gb|EFC85153.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 250

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT REVE L  +++G ++ + A  LG+S  TV N++ +++ K   + R     +A+R
Sbjct: 184 EPRLTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLAKLQLRNRVELTRFALR 243

Query: 243 NN 244
             
Sbjct: 244 EG 245


>gi|221633727|ref|YP_002522953.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
 gi|221157126|gb|ACM06253.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
          Length = 246

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  ++ G ++ EIA +L ++ +TV N ++ +  K   K R+ A  +A+ N
Sbjct: 170 VRLTRRETQLLQLVASGLSNKEIADVLSLAESTVKNRLSLLFDKLGVKDRTQAAIFALAN 229

Query: 244 NIV 246
            ++
Sbjct: 230 GVL 232


>gi|148555723|ref|YP_001263305.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148500913|gb|ABQ69167.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1]
          Length = 146

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   +T RE+  L  ++ G+++ EIA+ L +S NTV  ++A +  K     R+ A+A A 
Sbjct: 81  ESLGITPRELAVLRELAAGRSNKEIAIRLAVSPNTVKTHVARLFEKLGAARRTDALARAR 140

Query: 242 RNNIV 246
              I+
Sbjct: 141 ALGIL 145


>gi|194466362|ref|ZP_03072349.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
 gi|194453398|gb|EDX42295.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
          Length = 217

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    I+ G ++ EI+  + IS  TV  + A+I RK     R   + YA+ +++
Sbjct: 155 LSKREKEVFPLIALGYSNKEISQKMFISTKTVEAHKANISRKLHLHGRVELVQYAIHHHL 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|24114788|ref|NP_709298.1| putative regulator [Shigella flexneri 2a str. 301]
 gi|30065198|ref|NP_839369.1| putative regulator [Shigella flexneri 2a str. 2457T]
 gi|110807384|ref|YP_690904.1| putative regulator [Shigella flexneri 5 str. 8401]
 gi|24054012|gb|AAN45005.1| putative regulator [Shigella flexneri 2a str. 301]
 gi|30043460|gb|AAP19180.1| putative regulator [Shigella flexneri 2a str. 2457T]
 gi|110616932|gb|ABF05599.1| putative regulator [Shigella flexneri 5 str. 8401]
 gi|281602877|gb|ADA75861.1| putative HTH-type transcriptional regulator yhjB [Shigella flexneri
           2002017]
 gi|313647630|gb|EFS12080.1| bacterial regulatory s, luxR family protein [Shigella flexneri 2a
           str. 2457T]
 gi|332750052|gb|EGJ80464.1| transcriptional regulator, LuxR family [Shigella flexneri K-671]
 gi|332750208|gb|EGJ80619.1| transcriptional regulator, LuxR family [Shigella flexneri 4343-70]
 gi|332751272|gb|EGJ81675.1| transcriptional regulator, LuxR family [Shigella flexneri 2747-71]
 gi|332997514|gb|EGK17130.1| transcriptional regulator, LuxR family [Shigella flexneri K-218]
 gi|333012477|gb|EGK31858.1| transcriptional regulator, LuxR family [Shigella flexneri K-304]
          Length = 200

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|89070144|ref|ZP_01157473.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044261|gb|EAR50407.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 211

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 19/189 (10%)

Query: 63  LVRWDLFQEQ--KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV--FHTLPE 118
           +      QE   +++++       DL     L        +L+R  E    +   H  PE
Sbjct: 32  VASLGNGQEAVDRVEALAPDVMLLDL-NMPGLGGLSATEMILERRPETRILILSMHDSPE 90

Query: 119 NITPPAG-MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
            I+         Y         IR  +  +             E  L    + ++     
Sbjct: 91  YISTALSHGARGYVLKDVPTDEIRTAIDAVLGG----------ETYLCTGAKGSLRPRT- 139

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE   L  +++G+++ E+A++L IS  TV  +  +I RK    + +G  
Sbjct: 140 --TDGREPLTTREQTILLRLAQGRSNKEVALLLDISVRTVETHRKNIKRKLGISSTAGLT 197

Query: 238 AYAVRNNIV 246
            YA+ + ++
Sbjct: 198 RYALEHGVL 206


>gi|296447677|ref|ZP_06889595.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
 gi|296254818|gb|EFH01927.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
          Length = 233

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 72/238 (30%), Gaps = 15/238 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           E   R       P R     R++ ++       R+  +         L     L +   +
Sbjct: 3   EPPARAIGEGETPPR----CRILLVEDERPIRERLARVIGAWPRGELLAACSTLAEAAAV 58

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTLPENITPPAGMDN 128
               S D    L+  + L +    + +            +           I       +
Sbjct: 59  IDRRSVD---LLITDLKLPDGHGVHAIRLLRAACPEAEAMVISALADDRSVIEAIEAGAS 115

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     D   I   +  L      I       I  +                    LT 
Sbjct: 116 GYLLKDSDPIDILDAIADLLAGRSPISSTIARTI--IRRISGRAPAHEQAAAIAAERLTP 173

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE++ L  I++G T  E+A  L ISR TV  +I ++ RK  +  RS A+  A R  ++
Sbjct: 174 REMDILHGIAKGLTYAELATHLQISRQTVPAHIKNVYRKLQSNNRSEAVYEASRRGLI 231


>gi|171910618|ref|ZP_02926088.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 213

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 9/168 (5%)

Query: 78  VSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPP----AGMDNRYC 131
           V  D P  L+  + L  +       VL+        +  T  ++            + Y 
Sbjct: 44  VPDDPPDVLLVDINLGGRSGIECTAVLKSTLPKLQVLMVTTYDDTKMIFEALRAGASGYI 103

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A I   +M +   G  +      ++    ++  N  +       +   LT RE 
Sbjct: 104 LKRTPAAGIVEAVMEIHNGGAPMSVPIARKV---VSHFHNESRRDVRDRPEFSGLTPREF 160

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E LT +++G    EIA  LGIS +TV  ++  I  K   +TR+ A+  
Sbjct: 161 EILTQLAKGLQYKEIADQLGISTSTVRGHLHVIYGKLHVQTRTEAVIK 208


>gi|56696391|ref|YP_166748.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56678128|gb|AAV94794.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 234

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 8/174 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF--HTLPEN--ITPPAGM 126
           E  LD + +   P  ++  + L + +    +++  T    PV    ++ +N  I+     
Sbjct: 49  EDALDWLGNHPAPDLVILDLNLPDVEGLDGLVRIRTAARAPVIVVSSMADNRVISGVIQA 108

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                        +    +     G +   +   ++    A +       +    +   L
Sbjct: 109 GAAGFVPKHSQREVFRTAIETVSTGAVFTPEGFVDV----AREGGDGPEVEDALARLSAL 164

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           T ++   L  + EGK + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A
Sbjct: 165 TNQQARILQLVCEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIA 218


>gi|297157878|gb|ADI07590.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 222

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 6/160 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +      R   L    F              + +         +  G+  +   
Sbjct: 62  GIEATRRIVASGGRTRVLILTTFDLDEYAHAGLRAGASGFLVKDARPEELLAGIRAVATG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY----DVHWGKDFELTGREVECLTWISEGKTSDEI 206
             ++         LL  Y  ++        D    +   LTGRE E LT I  G T+ EI
Sbjct: 122 DAVVAPALTRR--LLDRYAHHLPAPDASTADGTDPRLAALTGREREVLTAIGRGWTNGEI 179

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L ++ +TV  ++  I+ K   + R  A+ +A    +V
Sbjct: 180 AQRLVVAESTVKTHVGRILAKIGGRDRVQAVIFAYDTRLV 219


>gi|256377059|ref|YP_003100719.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921362|gb|ACU36873.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 207

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 54/154 (35%), Gaps = 7/154 (4%)

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG-----LMLLFPKGR 152
              + +  TE   PV   L E              +         G      +L   +G 
Sbjct: 56  TSRLRRAATEAGTPVVLVLDEVGDADVLTAAECRVVAIVPRTAATGDRVLRSVLAAAEGG 115

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            ++   L  +  L  +   + +           LT RE + L  I+EG  + EIA  L  
Sbjct: 116 GVMPPNL--VAELLRHVQRLQRELVATETGPDRLTSREADVLRLIAEGLDTAEIATRLSY 173

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV N    I  +   + R  A+AYA+R  ++
Sbjct: 174 SERTVKNVFYGITTRLHLRNRPHAVAYALRKGMI 207


>gi|256423166|ref|YP_003123819.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256038074|gb|ACU61618.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 215

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 3/139 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   VF              + Y        R+   +  L   G  +       +  L  
Sbjct: 80  LIQTVFEDDDRVFDSICAGASGYILKNHLNTRLIDAIQELQTGGSPMSPSIARRV--LNL 137

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            Q +  +  + +    + LT RE E LT I  G++   IA  L IS  TV +++  I  K
Sbjct: 138 LQKSAVQKPEPN-NDSYNLTAREKEVLTCIVNGQSYKMIASDLNISYETVRSHVKKIYEK 196

Query: 228 TATKTRSGAIAYAVRNNIV 246
               + + A+A A+   IV
Sbjct: 197 LHVASLTEAVALAINQRIV 215


>gi|254445671|ref|ZP_05059147.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198259979|gb|EDY84287.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 213

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 37/75 (49%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A    + F+           L+ RE E L ++++G T+ EIA  L ++  TV+ ++ + 
Sbjct: 133 VARRVISYFRQEAQVSSDVDSLSNREREVLEFVAQGFTNKEIAAKLSVTPETVHWHLKNC 192

Query: 225 MRKTATKTRSGAIAY 239
            +K   +TR+ A   
Sbjct: 193 YKKLHVRTRTEAAMK 207


>gi|161502599|ref|YP_001569710.1| transcriptional regulator NarP [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863946|gb|ABX20569.1| hypothetical protein SARI_00645 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 214

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 15/127 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           ++  +          D+    L   + +   G  +   +    LR+R             
Sbjct: 95  IYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVFSERVNEYLRER------------- 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 142 --ERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIA 238
           +R  A  
Sbjct: 200 SRVAATI 206


>gi|160938403|ref|ZP_02085758.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438776|gb|EDP16533.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC
           BAA-613]
          Length = 222

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 76/190 (40%), Gaps = 6/190 (3%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPE 118
           ++V       Q++   V  + P  ++  + + + D       + +   ++   +  T  +
Sbjct: 27  IMVTDVASNGQEVIRSVRKNKPDVILMDIRMPKLDGVQCTKIIKENYPQIKIIILTTFDD 86

Query: 119 NITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           +      +    + Y      +  +   +  ++    +I  D   ++  L +  A    S
Sbjct: 87  DEYVYNALKYGASGYLLKGVSMDELANAITTVYNGWAMINPDIATKVLRLFSQMAQADYS 146

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V      ELT  E + +  +  G ++ EIA  L +S  TV NY+++I+ K   + R+ 
Sbjct: 147 ILVGDKNVDELTKTEWKIIAQVEVGASNREIAEALKLSEGTVRNYLSTILNKLDLRDRTQ 206

Query: 236 AIAYAVRNNI 245
              +AV+ N+
Sbjct: 207 LAIWAVQTNV 216


>gi|225155028|ref|ZP_03723524.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224804198|gb|EEG22425.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 217

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++E  T+ +IA  L IS  TV+N+  ++MRK      +    YAV   +
Sbjct: 151 LTDREREILQLVAESYTTKDIATKLDISAKTVDNHRTNLMRKLNLHDVASLTRYAVEIGL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|28868117|ref|NP_790736.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213970211|ref|ZP_03398342.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301385917|ref|ZP_07234335.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059557|ref|ZP_07251098.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130881|ref|ZP_07256871.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28851354|gb|AAO54431.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213925092|gb|EEB58656.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|331018801|gb|EGH98857.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 207

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA----YA 240
            LT R+ + L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS A A     A
Sbjct: 146 PLTTRQKQVLGLVAAGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRSAAAAQFSSLA 205

Query: 241 VR 242
           +R
Sbjct: 206 IR 207


>gi|330966354|gb|EGH66614.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 207

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA----YA 240
            LT R+ + L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS A A     A
Sbjct: 146 PLTTRQKQVLGLVAAGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRSAAAAQFSSLA 205

Query: 241 VR 242
           +R
Sbjct: 206 IR 207


>gi|327313477|ref|YP_004328914.1| LuxR family transcriptional regulator [Prevotella denticola F0289]
 gi|326945945|gb|AEA21830.1| transcriptional regulator, LuxR family [Prevotella denticola F0289]
          Length = 214

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT  E E L  I+ G T+ EIA     S +TVN +  +I RK        A+ YA+R+
Sbjct: 145 VKLTKTETEILKEIALGLTTREIAEKRFSSFHTVNTHRKNIFRKLGVNNVHEAMRYAMRS 204

Query: 244 NIV 246
            +V
Sbjct: 205 GLV 207


>gi|288958810|ref|YP_003449151.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911118|dbj|BAI72607.1| two-component response regulator [Azospirillum sp. B510]
          Length = 223

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 16/174 (9%)

Query: 83  PFDLVR-CMALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPAGMDN--RYCSLTF 135
           PFDL+   + +     +  +       P  L   V  +   +    A  +    Y   + 
Sbjct: 47  PFDLILLDLGMPGWSGFSALGDIHASLPKALLVVVSGSEKRSDLLAALENGAAGYIPKSS 106

Query: 136 DVARIRIGLMLLFPKGRIILR------DRLWEIGLLAAYQANMFKSYDVHW---GKDFEL 186
               +   L L+   G  +        DRL +         +     D      G   +L
Sbjct: 107 SAKVLLGALQLVLAGGIYLPEQAIRGGDRLEQTHGGYGSSGSGDAMEDSAASGGGNGDQL 166

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           T R+ + L  + +GK++ +IA  LG++  TV  ++ +I+R    + R+ A   A
Sbjct: 167 TPRQRDVLVRLRDGKSNKQIAHELGLTEGTVKVHVTAILRHLGVRNRTQAALTA 220


>gi|226361838|ref|YP_002779616.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240323|dbj|BAH50671.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 759

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E   LA       K      G    LT RE +    +++G T+ EIA  L IS+ TV+ +
Sbjct: 673 ESVALALGSETDRKPKGKESGTRAGLTRREQQIAALVADGLTNREIATKLVISQRTVDAH 732

Query: 221 IASIMRKTATKTRSGAIAY 239
           +  I+ K   ++R+  + +
Sbjct: 733 VEHILTKLGFRSRTQIVRW 751


>gi|162456402|ref|YP_001618769.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
 gi|161166984|emb|CAN98289.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
          Length = 233

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 6/123 (4%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y   T  +  +  G+  +   G  +         +  A    M K      G  
Sbjct: 115 RAGAQGYLVKTSKLEEVIEGIRRIATGGAPLSS------SIAGAVVRAMRKPASEGSGGL 168

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  ++ G ++ E A  L IS  TV  +   I  K   K+       AVR 
Sbjct: 169 DALTPRERQVLRLLAAGVSTRETAARLTISPKTVETHRVRIYAKLGCKSAVELTRIAVRT 228

Query: 244 NIV 246
            ++
Sbjct: 229 GLI 231


>gi|159040340|ref|YP_001539593.1| LuxR family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157919175|gb|ABW00603.1| transcriptional regulator, LuxR family [Salinispora arenicola
           CNS-205]
          Length = 207

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 18/201 (8%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           L  Y+ +     V     Q +    +VS D              D    + +   EL  P
Sbjct: 19  LLSYLQSRSEFAVVDPADQAEATVFVVSCDQ----------LTADVVALLRRSAAELAVP 68

Query: 112 VFHTLPENITPPAGMDNRY------CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
           V   + E       +            +     R+   ++     G ++  + + E  LL
Sbjct: 69  VVLVVSEITEAELLIAVECRVVAVLPRVAVTADRLAHSVLAAANGGGVLPPNLVGE--LL 126

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
              +    +    +      LT RE++ L  ++ G  + EIA  L  S  TV N I  + 
Sbjct: 127 KHVERLHREVLTPNGLNAAGLTSREIDVLRLMANGFDTHEIADELCYSERTVKNVIYGVT 186

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            +   + R+ A+AYA+R  ++
Sbjct: 187 HRLKLRNRAHAVAYALRTGMI 207


>gi|329848990|ref|ZP_08264018.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
 gi|328844053|gb|EGF93622.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
          Length = 216

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 11/133 (8%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L          D    ++T  + RI  G   L P              LL  +  + 
Sbjct: 94  FDALAAGAHGYLLKDEDRAAMTHFLRRIETGDPPLSPSIAR---------RLLKHFHRSE 144

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            ++       +  LTGRE E LT ++ G T  E+A  L +   TV  Y+  I +K    +
Sbjct: 145 VEAP--APDNEVVLTGRETETLTLLARGLTIAEVAKALNLKPQTVAGYVKVIYQKLNVSS 202

Query: 233 RSGAIAYAVRNNI 245
           R+ A   AV+  +
Sbjct: 203 RAEATLKAVKRGL 215


>gi|300725937|ref|ZP_07059399.1| transcriptional regulator [Prevotella bryantii B14]
 gi|299776788|gb|EFI73336.1| transcriptional regulator [Prevotella bryantii B14]
          Length = 214

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 9/111 (8%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +  I   +M      R I + R+ E+ L++               +   LT  E+E L 
Sbjct: 106 SLPEIHEAIMFAMRNHRYICQ-RMTEMLLVSREV--------TPEKEQINLTKTEIEILK 156

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G T+ EIA     S +TVN +  +I RK        A  YA+R  +V
Sbjct: 157 DIALGMTTKEIAEKRFSSFHTVNTHRKNIFRKLNVNNVHEATKYALRAGLV 207


>gi|190894575|ref|YP_001984868.1| putative LuxR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|190700236|gb|ACE94318.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
 gi|327189865|gb|EGE57000.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 265

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 71/198 (35%), Gaps = 19/198 (9%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           +Y     +   R D  Q+  L +     W +D          D    +    +E   PV 
Sbjct: 69  DYWFDRGYF--RIDPVQQVALRTSAPFFWNYD---------PDADTLIKGFMSEDTAPVT 117

Query: 114 HTLPE-----NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
             L E      +T P  M     +    +   R           I   + L  +   AAY
Sbjct: 118 RYLSERDMSTGVTVPVHMPRGDYATVTGIRFGRNNDFERHALRYIADFNLLAHVFHEAAY 177

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                K+  V   +   LT RE ECL   +EG ++ EI+ I+  S  TV  ++ +  +K 
Sbjct: 178 SLFDRKARSVGTVR---LTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKL 234

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + R+ A+  A    ++
Sbjct: 235 GARNRTQAVVRATHYRLL 252


>gi|24379934|ref|NP_721889.1| putative response regulator [Streptococcus mutans UA159]
 gi|290580086|ref|YP_003484478.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24377915|gb|AAN59195.1|AE014986_6 putative response regulator [Streptococcus mutans UA159]
 gi|254996985|dbj|BAH87586.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 198

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  +++G ++  IA  L +S  T+ NY+ +I  K     R+ A+  A  N 
Sbjct: 137 PLSEREQEVLQLVAKGASNQTIAEQLFLSNGTIRNYMTAIFNKLNANNRTDAVRIARENG 196


>gi|239929732|ref|ZP_04686685.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438058|ref|ZP_06577448.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340953|gb|EFE67909.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 221

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 71/222 (31%), Gaps = 11/222 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D        + A+   +G+S    V  +    ++   +  +  P   +  + +
Sbjct: 1   MIRVLLADDEAMVRAGVRAI---LGSSGETEVVAEAGDGREAVELARAHRPDVALLDIRM 57

Query: 93  SEKDKYYNVLQRPTEL------FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              D      +    +          F           G    +   + D   +  G+  
Sbjct: 58  PRLDGLAAAEEIVRAVPGTAVAMLTTFSERTYVARALGGGATGFLLKSGDPYELIAGVRA 117

Query: 147 LFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +      +     R    GL  A+             +   L+ RE E L  +  G ++ 
Sbjct: 118 VAGGAAFLSPTVARYVIEGLGGAHGTGRLTREAEARARVAVLSPREREVLGLVGAGLSNP 177

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +   TV  Y+++++ +   + R  A   A    +V
Sbjct: 178 EIAARLHLVEGTVKAYVSAVLDRLGVRNRVQAAIVAHEAGLV 219


>gi|209551570|ref|YP_002283487.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537326|gb|ACI57261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 260

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L+         L   L++   + A + N  K   +       LT REV+ L  I +G  
Sbjct: 149 ALLNRLTNKNTPLEPSLYQTKSVDAARTNALK---LRRDSISSLTTREVQILDLICKGTQ 205

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  IA  L +S NTV  ++ +I +K   + R+ A + 
Sbjct: 206 NKIIADKLHLSENTVKVHVRNIYKKMNVRNRTEAASR 242


>gi|290957348|ref|YP_003488530.1| two-component chitin response regulator [Streptomyces scabiei
           87.22]
 gi|260646874|emb|CBG69971.1| two-component chitin response regulator [Streptomyces scabiei
           87.22]
          Length = 210

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 5/167 (2%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           P  ++  + +   D        V +   ++       L E +            L    A
Sbjct: 45  PDLVLMDVQMPRLDGVSATRQVVAEGLADVLVLTTFDLDEYVFGALRAGAAGFLLKNTEA 104

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R  I  +    +G  ++   +    L+A + A   +   V       LT RE E L  + 
Sbjct: 105 RDLIEAVRAVGRGEGLIAPAVTRR-LIAEFAAGPAREPAVDPAVLDSLTRREREVLGALG 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G ++ EIA  L ++  TV  +++ ++ K   ++R  A   A    +
Sbjct: 164 AGLSNAEIAGRLDMAEATVKTHVSRLLGKLDLRSRVQAAVLARELGV 210


>gi|239813574|ref|YP_002942484.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239800151|gb|ACS17218.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 227

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R+VE L  +S+GK +  I   LGIS  TV  ++A+I R    + R+ A+  A
Sbjct: 164 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAA 218


>gi|207723660|ref|YP_002254058.1| two-component response regulator [Ralstonia solanacearum MolK2]
 gi|206588864|emb|CAQ35826.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 217

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 59/177 (33%), Gaps = 10/177 (5%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +  +V +D     +  + +    K    L +   +   V+              + Y 
Sbjct: 26  SLIPDLVLTDLSMPGMNGIDMVATIK--RRLPQIRVVVLTVYKAEEYVREALRVGVDGYV 83

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGR 189
                   +   L ++    R +  D      +      +     D    K     L+ R
Sbjct: 84  LKDASFEELVTALHVVMLGKRHLSAD------VYGNVVQSFVNGRDAPAPKSAWETLSAR 137

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E   L  ++EG+T+ ++ + L +S  T+  Y A +M K      +G +  A+   ++
Sbjct: 138 ERSVLQLVAEGRTNRQVGLYLNLSPKTIEKYRAHLMEKLGVCNVTGLVLAAIDLGLI 194


>gi|114571288|ref|YP_757968.1| two component LuxR family transcriptional regulator [Maricaulis
           maris MCS10]
 gi|114341750|gb|ABI67030.1| two component transcriptional regulator, LuxR family [Maricaulis
           maris MCS10]
          Length = 201

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 4/159 (2%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
               L   D     +    ++   +     + +   +GM +            R  +   
Sbjct: 46  NRYDLVLLDLRMPGIAGVQDVRDLMKRHADQPVAILSGMASPMEVQMLLENGARGFIPKT 105

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            P   ++   RL    +LA    +          +   LT RE E L  +  G+ + EIA
Sbjct: 106 MPADGLVAAVRL----ILAGQVFSPIHHTTDPENEPASLTPREREVLFCLQRGEANKEIA 161

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L I   TV  ++ S+  K   + R+  +  A++   +
Sbjct: 162 RSLEIQETTVKLHLRSLSLKLDARNRTEVVVKAIQAGFL 200


>gi|309812054|ref|ZP_07705815.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
 gi|308433986|gb|EFP57857.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
          Length = 204

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 4/138 (2%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +   EL   + H  PE++      D+   +         +  +        + R    + 
Sbjct: 34  RSAAELLAQLEHATPEHLLVVTEDDDILATAIRCGVHGVLAEVPTPLDEAALARMLRADE 93

Query: 163 GLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             +A  +A    +      +     + L+ RE E L  ++ G+++  IA  L +S NTV 
Sbjct: 94  PYVAPERAAQVWAVACALARAPHPTYALSAREREVLDLVARGRSNRSIAATLFLSENTVR 153

Query: 219 NYIASIMRKTATKTRSGA 236
           N++A I R     +R+ A
Sbjct: 154 NHLARIYRTLGVSSRAEA 171


>gi|271963970|ref|YP_003338166.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507145|gb|ACZ85423.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 8/186 (4%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPEN 119
            +    + L  +V    P   +  + + + D      +          L    F      
Sbjct: 31  AEAGDGRTLVELVREHRPDVALVDIRMPDLDGLAATTEIRRTVPGTAVLIMTTFGRDSYI 90

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
               A     +   T D     + +      G  +         ++     +        
Sbjct: 91  ARALADGAAGFLLKTGDPREFLLAVRAAAEGGAYLSP--RVAARVIGELAGDRLARGSAA 148

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   LT RE E L  +  G ++ EIA  L +   +V  Y+++I+ +   + R  A   
Sbjct: 149 RERIDVLTRREREVLGLVGAGLSNAEIARRLHLVEGSVKTYVSTILGRLGVRNRVQAAVL 208

Query: 240 AVRNNI 245
           A    +
Sbjct: 209 AHEAGL 214


>gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300075725|gb|ADJ65124.1| nitrate/nitrite response regulator transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-- 163
            E    +   LPE       +      LT  +     G +L   +   +++         
Sbjct: 64  LEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAAAGE 123

Query: 164 ----------LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
                     L+   +A              +LT RE   +  I+ G+++ EIA  L ++
Sbjct: 124 PVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSLEVA 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +TV  ++ +++RK    +R     YAV + +
Sbjct: 184 ESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215


>gi|258654190|ref|YP_003203346.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258557415|gb|ACV80357.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 218

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E     + G ++ EIA    +S  TV  +I+ I+ K A + R   + +A  + 
Sbjct: 157 ELTQREREIFALAARGLSNAEIAAREFLSEATVKTHISRILGKLALRDRVQLVVFAYEHG 216

Query: 245 I 245
           +
Sbjct: 217 L 217


>gi|251777972|ref|ZP_04820892.1| sigma-70, region 4 family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082287|gb|EES48177.1| sigma-70, region 4 family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 243

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +LT RE+E +  I+ G T+ EI + L IS  TV  ++ +I+RK   K R   + +
Sbjct: 179 ENKLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRLEVVIF 235


>gi|218754218|ref|ZP_03533014.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           GM 1503]
          Length = 898

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 831 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 889


>gi|295131556|ref|YP_003582219.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|291375244|gb|ADD99098.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313771696|gb|EFS37662.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313810519|gb|EFS48233.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313831559|gb|EFS69273.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313832545|gb|EFS70259.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314974910|gb|EFT19005.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977995|gb|EFT22089.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314984592|gb|EFT28684.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315095475|gb|EFT67451.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327332792|gb|EGE74524.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327448413|gb|EGE95067.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448489|gb|EGE95143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|328762067|gb|EGF75572.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
          Length = 224

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +
Sbjct: 160 LSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|188590713|ref|YP_001921256.1| sigma-70, region 4 family [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500994|gb|ACD54130.1| sigma-70, region 4 family [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 243

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +LT RE+E +  I+ G T+ EI + L IS  TV  ++ +I+RK   K R   + +
Sbjct: 179 ENKLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRLEVVIF 235


>gi|187933177|ref|YP_001885914.1| sigma-70, region 4 family [Clostridium botulinum B str. Eklund 17B]
 gi|187721330|gb|ACD22551.1| sigma-70, region 4 family [Clostridium botulinum B str. Eklund 17B]
          Length = 243

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +LT RE+E +  I+ G T+ EI + L IS  TV  ++ +I+RK   K R   + +
Sbjct: 179 ENKLTLREMEVVKLINLGMTNKEICMKLNISEKTVKTHVTNILRKLKMKDRLEVVIF 235


>gi|16761174|ref|NP_456791.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141132|ref|NP_804474.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412856|ref|YP_149931.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|168229605|ref|ZP_02654663.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236420|ref|ZP_02661478.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168818030|ref|ZP_02830030.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194471476|ref|ZP_03077460.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736026|ref|YP_002115321.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197250575|ref|YP_002147204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197361787|ref|YP_002141423.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|213028722|ref|ZP_03343169.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213051724|ref|ZP_03344602.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213418242|ref|ZP_03351308.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426294|ref|ZP_03359044.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213622209|ref|ZP_03374992.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213649802|ref|ZP_03379855.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289812587|ref|ZP_06543216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289824610|ref|ZP_06544153.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25298773|pir||AD0787 nitrate/nitrite response regulator protein NarP STY2472 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503473|emb|CAD07478.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136758|gb|AAO68323.1| nitrate/nitrite response regulator protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56127113|gb|AAV76619.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194457840|gb|EDX46679.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711528|gb|ACF90749.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197093263|emb|CAR58709.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214278|gb|ACH51675.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197290466|gb|EDY29821.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|205335871|gb|EDZ22635.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205344893|gb|EDZ31657.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|322615257|gb|EFY12179.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617847|gb|EFY14743.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624558|gb|EFY21389.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626991|gb|EFY23787.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634176|gb|EFY30912.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635631|gb|EFY32341.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640233|gb|EFY36897.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646344|gb|EFY42856.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649311|gb|EFY45747.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656431|gb|EFY52720.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661159|gb|EFY57386.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665703|gb|EFY61887.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667229|gb|EFY63396.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671234|gb|EFY67362.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675125|gb|EFY71202.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680733|gb|EFY76768.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686908|gb|EFY82885.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192673|gb|EFZ77900.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198895|gb|EFZ83994.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323205094|gb|EFZ90072.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208137|gb|EFZ93081.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211120|gb|EFZ95970.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215837|gb|EGA00580.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221856|gb|EGA06256.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223671|gb|EGA07980.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231283|gb|EGA15398.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233716|gb|EGA17808.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237788|gb|EGA21848.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245769|gb|EGA29763.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246491|gb|EGA30470.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252610|gb|EGA36449.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255334|gb|EGA39107.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259569|gb|EGA43204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266066|gb|EGA49559.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272760|gb|EGA56164.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 215

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   
Sbjct: 139 RERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNV 198

Query: 231 KTRSGAIA 238
           ++R  A  
Sbjct: 199 RSRVAATI 206


>gi|330875631|gb|EGH09780.1| regulatory protein, LuxR [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 87

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E + L W++ GKT+ EIA I   +  TV+ +  +I RK    + S A+  A+R  +
Sbjct: 24  LTVKERQVLEWVAAGKTAWEIARIQECTEATVHFHTCNIRRKFDVHSLSAALVMAIRQGV 83

Query: 246 V 246
           +
Sbjct: 84  I 84


>gi|269216624|ref|ZP_06160478.1| DNA-binding response regulator [Slackia exigua ATCC 700122]
 gi|269130153|gb|EEZ61235.1| DNA-binding response regulator [Slackia exigua ATCC 700122]
          Length = 211

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 9/173 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRY 130
            +     P  L+  + +S +D      +         +      +  E I     M  R 
Sbjct: 40  RLFEEHAPDVLLSDIRMSGRDGLSAAEELLRHDPEARVVFLTTFSDDEYIVRALKMGARG 99

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             +  DVA I   L  +     ++  + L     +A                   LT RE
Sbjct: 100 YLIKQDVASIAPALRAVMAGQNVLEGEVLERAAFMAGGIGGSR----TDESALSSLTERE 155

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E +  ++EG  + E A +L +S  T+ N+I+S++ K   + R+    +  R 
Sbjct: 156 REVVRAVAEGLDNAEAADMLCMSEGTLRNHISSVLAKLGLRNRTQIAVFYYRR 208


>gi|269796113|ref|YP_003315568.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269098298|gb|ACZ22734.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 220

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 11/154 (7%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
           +  ++L     L   V     + +         Y +       +   +  +     +   
Sbjct: 74  RCADLLAGTRFLALSVSDAAEDVVAVIRAGARGYVTKAISGQELGDAIDRVSGGDAVFSP 133

Query: 157 DRLWEIGLLAAYQANMF--KSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGI 212
                   LA +  + F  ++ DV    D    L+ RE E +  I+ G +  E+A  L I
Sbjct: 134 -------RLAGFVLDSFGTQAADVAVADDELDRLSAREQEVMRLIARGYSYREVASELFI 186

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  ++++++RK    +R     +A    ++
Sbjct: 187 SIKTVETHVSAVLRKLQLSSRHELTRWAAARRLL 220


>gi|297203494|ref|ZP_06920891.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714467|gb|EDY58501.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 236

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 17/182 (9%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRP--------TELFCPVFHTLPENITPPAGMDNRYC 131
           S+ P  ++  + + E D      +            L   +F              + + 
Sbjct: 50  SERPDVVLMDIRMPELDGIEATRRICGSPATAGVRVLILTMFDIDEYVFDGLRAGASGFL 109

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY----QANMFKSYDVHWGKDFEL- 186
                 A +   + ++     ++         L+A +    +A      D        L 
Sbjct: 110 LKDTPPADLLTAIRVIAGGDALLAPAVTRR--LIAEFCRRPEARPEGRLDGLASAPRGLD 167

Query: 187 --TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             T RE E L  I+ G ++ EI+  L +S  TV  ++  ++ K   + R+  +  A  + 
Sbjct: 168 GVTDREREVLLLIAGGLSNTEISNRLHLSHGTVKTHVGRLLAKLEARDRAQLVIAAYESG 227

Query: 245 IV 246
           +V
Sbjct: 228 LV 229


>gi|253690507|ref|YP_003019697.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|34398218|gb|AAQ67211.1| transcriptional regulator [Enterobacteriaceae bacterium A2JM]
 gi|251757085|gb|ACT15161.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 242

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M +S      K+   + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K   
Sbjct: 164 EMIESKKQLNNKEM-FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 231 KTRSGAIAYAVRNNIV 246
                AI   V   ++
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|260905348|ref|ZP_05913670.1| two-component system response regulator [Brevibacterium linens BL2]
          Length = 224

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRN 215
           + L    +     + M         K  + LT RE E L  + +G ++DEIA  L +S  
Sbjct: 126 EALLSPEVTRYLLSRMSLGLRAEPAKHLDVLTQREREVLALVGQGLSNDEIAAQLVLSPL 185

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T   +++ IM K A + R   +  A  + +V
Sbjct: 186 TAKTHVSRIMSKVAARDRVHLVVLAYESGLV 216


>gi|307565431|ref|ZP_07627920.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
 gi|307345881|gb|EFN91229.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
          Length = 200

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S    YAV
Sbjct: 131 KNKLLSNREIEVLSLIVQGMINKEIADKLNISLTTVITHRKNIMDKLGMRSVSALTIYAV 190

Query: 242 RNNIV 246
            +  V
Sbjct: 191 MHGYV 195


>gi|298241316|ref|ZP_06965123.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554370|gb|EFH88234.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 215

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 14/135 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  +            R+  +   +  +  G             D ++   +     + 
Sbjct: 92  VFAAMRAGARGYLLKGVRHEDMVRAIRAVGNG-------------DAIFSPAIATKLVSY 138

Query: 172 MFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                  H    F EL+ RE E L  +++G  + EIA  L +S  +V NY+++++ K   
Sbjct: 139 FSTLQPAHLAPVFPELSQREREILALLAQGCKNAEIAERLVVSPKSVRNYVSNVISKLQV 198

Query: 231 KTRSGAIAYAVRNNI 245
             R+ AI  A    +
Sbjct: 199 ADRAQAILRAKDAGL 213


>gi|283786004|ref|YP_003365869.1| nitrate/nitrite response regulator protein [Citrobacter rodentium
           ICC168]
 gi|282949458|emb|CBG89071.1| nitrate/nitrite response regulator protein [Citrobacter rodentium
           ICC168]
          Length = 215

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 15/127 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  +          D+    L   + +   G  +   +    LR+R             
Sbjct: 95  VYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVFSERVNEYLRER------------E 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +F   D  +     LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   +
Sbjct: 143 LFGEQDDPFSI---LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199

Query: 232 TRSGAIA 238
           +R  A  
Sbjct: 200 SRVAATI 206


>gi|300776299|ref|ZP_07086157.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300501809|gb|EFK32949.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 225

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +L  Y  +  K   + +  + EL+ RE + +  I +  T++EI   L IS  TV ++  
Sbjct: 138 QMLFTYMNSSAKKKSL-FETEDELSEREKDVVKLICQELTNNEIGEKLFISPRTVESHRQ 196

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
            I+ K   K   G + YA+ NNI
Sbjct: 197 RILEKIGAKNTVGIVIYAIVNNI 219


>gi|134292079|ref|YP_001115815.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134135236|gb|ABO56350.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 213

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 11/181 (6%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L Q    D+IV        ++   ++  D       +  +L   V  T  +     A   
Sbjct: 42  LDQSADFDAIVLD------LKLPGMNGLDAISAFAGKCPQLQIIVLSTSEDAADVRAAFA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFE 185
                    V +      +L     ++  +R     +L  ++  A               
Sbjct: 96  RGALGY---VPKSAGPHTVLSAIRMVLDGERYVPPLMLDDSSSAAPGSPRPAPATRSAGP 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L +++EG  +  IA  L +S  TV  ++ +I +      R+ A A A +  +
Sbjct: 153 LTQRQIEVLRYVAEGVPNKVIADRLNLSEKTVKAHVTAIFKALNVLNRTQAAAAARKAGL 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|169627165|ref|YP_001700814.1| nitrate/nitrite response transcriptional regulatory protein NarL
           [Mycobacterium abscessus ATCC 19977]
 gi|169239132|emb|CAM60160.1| Possible nitrate/nitrite response transcriptional regulatory
           protein NarL (LuxR family) [Mycobacterium abscessus]
          Length = 215

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G+T   IA  L ++ +TV  ++  +  K     R+ A+A A+R  +
Sbjct: 154 LSTREREVLRMIAAGQTVPAIARALFLAPSTVKTHVQRLYEKLGVGDRAAAVAEAMRRGL 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|15804064|ref|NP_290100.1| putative regulator [Escherichia coli O157:H7 EDL933]
 gi|15833654|ref|NP_312427.1| regulator [Escherichia coli O157:H7 str. Sakai]
 gi|168746942|ref|ZP_02771964.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168753332|ref|ZP_02778339.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168759603|ref|ZP_02784610.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168765927|ref|ZP_02790934.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168772526|ref|ZP_02797533.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168779663|ref|ZP_02804670.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168785385|ref|ZP_02810392.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC869]
 gi|168797350|ref|ZP_02822357.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|195935048|ref|ZP_03080430.1| putative regulator [Escherichia coli O157:H7 str. EC4024]
 gi|208808308|ref|ZP_03250645.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208814475|ref|ZP_03255804.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208820374|ref|ZP_03260694.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209396704|ref|YP_002272999.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217326332|ref|ZP_03442416.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254795473|ref|YP_003080310.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli O157:H7 str. TW14359]
 gi|261224835|ref|ZP_05939116.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254268|ref|ZP_05946801.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12518232|gb|AAG58661.1|AE005577_6 putative regulator [Escherichia coli O157:H7 str. EDL933]
 gi|13363874|dbj|BAB37823.1| putative regulator [Escherichia coli O157:H7 str. Sakai]
 gi|187771689|gb|EDU35533.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188018429|gb|EDU56551.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189002306|gb|EDU71292.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189359150|gb|EDU77569.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189364558|gb|EDU82977.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189369942|gb|EDU88358.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189374520|gb|EDU92936.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC869]
 gi|189379929|gb|EDU98345.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|208728109|gb|EDZ77710.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208735752|gb|EDZ84439.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208740497|gb|EDZ88179.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209158104|gb|ACI35537.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209755520|gb|ACI76072.1| putative regulator [Escherichia coli]
 gi|209755522|gb|ACI76073.1| putative regulator [Escherichia coli]
 gi|209755526|gb|ACI76075.1| putative regulator [Escherichia coli]
 gi|217322553|gb|EEC30977.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254594873|gb|ACT74234.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O157:H7 str.
           TW14359]
 gi|320191433|gb|EFW66083.1| Putative regulator [Escherichia coli O157:H7 str. EC1212]
 gi|326337482|gb|EGD61317.1| Putative regulator [Escherichia coli O157:H7 str. 1044]
 gi|326340008|gb|EGD63815.1| Putative regulator [Escherichia coli O157:H7 str. 1125]
          Length = 200

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|16131392|ref|NP_417977.1| predicted two-component system response regulator, LuxR-like HTH
           domain, function unknown [Escherichia coli str. K-12
           substr. MG1655]
 gi|74314226|ref|YP_312645.1| putative regulator [Shigella sonnei Ss046]
 gi|82545884|ref|YP_409831.1| regulator [Shigella boydii Sb227]
 gi|89110493|ref|AP_004273.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli str. K-12 substr.
           W3110]
 gi|157155556|ref|YP_001464990.1| LuxR family transcriptional regulator [Escherichia coli E24377A]
 gi|157162999|ref|YP_001460317.1| LuxR family transcriptional regulator [Escherichia coli HS]
 gi|170018251|ref|YP_001723205.1| two component LuxR family transcriptional regulator [Escherichia
           coli ATCC 8739]
 gi|170083031|ref|YP_001732351.1| DNA-binding response regulator in two-component regulatory system
           [Escherichia coli str. K-12 substr. DH10B]
 gi|187732835|ref|YP_001882209.1| LuxR family transcriptional regulator [Shigella boydii CDC 3083-94]
 gi|188493563|ref|ZP_03000833.1| transcriptional regulator, LuxR family [Escherichia coli 53638]
 gi|191165327|ref|ZP_03027170.1| transcriptional regulator, LuxR family [Escherichia coli B7A]
 gi|193068515|ref|ZP_03049477.1| transcriptional regulator, LuxR family [Escherichia coli E110019]
 gi|194431218|ref|ZP_03063511.1| transcriptional regulator, LuxR family [Shigella dysenteriae 1012]
 gi|194435746|ref|ZP_03067849.1| transcriptional regulator, LuxR family [Escherichia coli 101-1]
 gi|218556070|ref|YP_002388983.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli IAI1]
 gi|218697229|ref|YP_002404896.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli 55989]
 gi|218702285|ref|YP_002409914.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli IAI39]
 gi|238902609|ref|YP_002928405.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli BW2952]
 gi|253771649|ref|YP_003034480.1| LuxR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038698|ref|ZP_04872754.1| transcriptional regulator [Escherichia sp. 1_1_43]
 gi|254163442|ref|YP_003046550.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli B str. REL606]
 gi|260857624|ref|YP_003231515.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli O26:H11 str. 11368]
 gi|260870246|ref|YP_003236648.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli O111:H- str. 11128]
 gi|291284892|ref|YP_003501710.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293416965|ref|ZP_06659602.1| HTH-type transcriptional regulator yhjB [Escherichia coli B185]
 gi|293453825|ref|ZP_06664244.1| HTH-type transcriptional regulator yhjB [Escherichia coli B088]
 gi|297516998|ref|ZP_06935384.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           OP50]
 gi|300815266|ref|ZP_07095491.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300822085|ref|ZP_07102228.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300907585|ref|ZP_07125221.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300916753|ref|ZP_07133464.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|300922344|ref|ZP_07138466.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300927986|ref|ZP_07143543.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|300950857|ref|ZP_07164739.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300955003|ref|ZP_07167413.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|301028224|ref|ZP_07191493.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|301306826|ref|ZP_07212876.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|301326665|ref|ZP_07219992.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|301646057|ref|ZP_07245962.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|307140209|ref|ZP_07499565.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           H736]
 gi|309796157|ref|ZP_07690568.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|331644228|ref|ZP_08345357.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H736]
 gi|331655145|ref|ZP_08356144.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           M718]
 gi|331659827|ref|ZP_08360765.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA206]
 gi|331665140|ref|ZP_08366041.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA143]
 gi|331679596|ref|ZP_08380266.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H591]
 gi|331685175|ref|ZP_08385761.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H299]
 gi|586682|sp|P37640|YHJB_ECOLI RecName: Full=Putative HTH-type transcriptional regulator yhjB
 gi|466657|gb|AAB18496.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655]
 gi|1789937|gb|AAC76545.1| predicted two-component system response regulator, LuxR-like HTH
           domain, function unknown [Escherichia coli str. K-12
           substr. MG1655]
 gi|73857703|gb|AAZ90410.1| putative regulator [Shigella sonnei Ss046]
 gi|81247295|gb|ABB68003.1| putative regulator [Shigella boydii Sb227]
 gi|85676524|dbj|BAE77774.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli str. K12 substr.
           W3110]
 gi|157068679|gb|ABV07934.1| transcriptional regulator, LuxR family [Escherichia coli HS]
 gi|157077586|gb|ABV17294.1| transcriptional regulator, LuxR family [Escherichia coli E24377A]
 gi|169753179|gb|ACA75878.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|169890866|gb|ACB04573.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187429827|gb|ACD09101.1| transcriptional regulator, LuxR family [Shigella boydii CDC
           3083-94]
 gi|188488762|gb|EDU63865.1| transcriptional regulator, LuxR family [Escherichia coli 53638]
 gi|190904729|gb|EDV64435.1| transcriptional regulator, LuxR family [Escherichia coli B7A]
 gi|192958166|gb|EDV88607.1| transcriptional regulator, LuxR family [Escherichia coli E110019]
 gi|194420673|gb|EDX36749.1| transcriptional regulator, LuxR family [Shigella dysenteriae 1012]
 gi|194425289|gb|EDX41273.1| transcriptional regulator, LuxR family [Escherichia coli 101-1]
 gi|209755518|gb|ACI76071.1| putative regulator [Escherichia coli]
 gi|209755524|gb|ACI76074.1| putative regulator [Escherichia coli]
 gi|218353961|emb|CAV00418.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli 55989]
 gi|218362838|emb|CAR00468.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli IAI1]
 gi|218372271|emb|CAR20134.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli IAI39]
 gi|226839204|gb|EEH71227.1| transcriptional regulator [Escherichia sp. 1_1_43]
 gi|238862250|gb|ACR64248.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli BW2952]
 gi|242379039|emb|CAQ33838.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli BL21(DE3)]
 gi|253322693|gb|ACT27295.1| transcriptional regulator, LuxR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975343|gb|ACT41014.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli B str. REL606]
 gi|253979499|gb|ACT45169.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli BL21(DE3)]
 gi|257756273|dbj|BAI27775.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O26:H11 str. 11368]
 gi|257766602|dbj|BAI38097.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O111:H- str. 11128]
 gi|260447465|gb|ACX37887.1| transcriptional regulator, LuxR family [Escherichia coli DH1]
 gi|290764765|gb|ADD58726.1| Putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291321951|gb|EFE61382.1| HTH-type transcriptional regulator yhjB [Escherichia coli B088]
 gi|291431541|gb|EFF04526.1| HTH-type transcriptional regulator yhjB [Escherichia coli B185]
 gi|299878710|gb|EFI86921.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|300318045|gb|EFJ67829.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|300400702|gb|EFJ84240.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300415975|gb|EFJ99285.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|300421284|gb|EFK04595.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300449833|gb|EFK13453.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300463993|gb|EFK27486.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|300525448|gb|EFK46517.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300532158|gb|EFK53220.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300837945|gb|EFK65705.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|300846669|gb|EFK74429.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|301075728|gb|EFK90534.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|308120218|gb|EFO57480.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|309703926|emb|CBJ03267.1| transcriptional regulator [Escherichia coli ETEC H10407]
 gi|315138096|dbj|BAJ45255.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           DH1]
 gi|315252577|gb|EFU32545.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1]
 gi|315295796|gb|EFU55113.1| transcriptional regulator, LuxR family [Escherichia coli MS 16-3]
 gi|320182580|gb|EFW57470.1| Putative regulator [Shigella boydii ATCC 9905]
 gi|320183472|gb|EFW58321.1| Putative regulator [Shigella flexneri CDC 796-83]
 gi|320639836|gb|EFX09430.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O157:H7 str. G5101]
 gi|320645336|gb|EFX14352.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O157:H- str. 493-89]
 gi|320650647|gb|EFX19113.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O157:H- str. H 2687]
 gi|320655841|gb|EFX23764.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661623|gb|EFX29038.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666646|gb|EFX33629.1| putative HTH-type transcriptional regulator yhjB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154025|gb|EFZ40231.1| bacterial regulatory s, luxR family protein [Escherichia coli
           EPECa14]
 gi|323174168|gb|EFZ59796.1| transcriptional regulator, LuxR family protein [Escherichia coli
           LT-68]
 gi|323179531|gb|EFZ65098.1| transcriptional regulator, LuxR family [Escherichia coli 1180]
 gi|323182990|gb|EFZ68391.1| transcriptional regulator, LuxR family protein [Escherichia coli
           1357]
 gi|323939500|gb|EGB35709.1| luxR family protein regulatory protein [Escherichia coli E482]
 gi|323944483|gb|EGB40556.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           H120]
 gi|323971378|gb|EGB66617.1| luxR family protein regulatory protein [Escherichia coli TA007]
 gi|323975078|gb|EGB70187.1| luxR family protein regulatory protein [Escherichia coli TW10509]
 gi|324116609|gb|EGC10526.1| luxR family protein regulatory protein [Escherichia coli E1167]
 gi|331036522|gb|EGI08748.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H736]
 gi|331047160|gb|EGI19238.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           M718]
 gi|331053042|gb|EGI25075.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA206]
 gi|331057650|gb|EGI29636.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA143]
 gi|331072768|gb|EGI44093.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H591]
 gi|331077546|gb|EGI48758.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           H299]
 gi|332084020|gb|EGI89227.1| transcriptional regulator, LuxR family [Shigella dysenteriae
           155-74]
 gi|332084586|gb|EGI89780.1| transcriptional regulator, LuxR family [Shigella boydii 5216-82]
 gi|332095823|gb|EGJ00831.1| transcriptional regulator, LuxR family [Shigella boydii 3594-74]
 gi|332345483|gb|AEE58817.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 200

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|319940899|ref|ZP_08015237.1| hypothetical protein HMPREF9464_00456 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805615|gb|EFW02403.1| hypothetical protein HMPREF9464_00456 [Sutterella wadsworthensis
           3_1_45B]
          Length = 249

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  +++G +  EI  ILGIS +TV  +I  I +K    +R  A+  A    +
Sbjct: 187 LSQRESEIIMLLAKGISFSEIGGILGISPHTVTAHIKKIYKKLGVHSRGEAVYEATCMGL 246

Query: 246 V 246
           V
Sbjct: 247 V 247


>gi|331649340|ref|ZP_08350426.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           M605]
 gi|330909574|gb|EGH38088.1| putative regulator [Escherichia coli AA86]
 gi|331041838|gb|EGI13982.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           M605]
          Length = 200

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|326774095|ref|ZP_08233377.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326636234|gb|EGE37138.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 237

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y +       +   +  +          RL    +L
Sbjct: 100 RFLALSVSDASDDVVGVIRAGARGYVTKAISTEDLAQAVRRVAAGDAAFSP-RLAGF-VL 157

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ A   +        D  L+ RE E +  I+ G T  E A  L IS  TV  ++++++
Sbjct: 158 DAFGAGAGEVAVADTELD-RLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVL 216

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R+    +AV   IV
Sbjct: 217 RKLQLSNRNELTRWAVARRIV 237


>gi|302340120|ref|YP_003805326.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637305|gb|ADK82732.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 220

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N +   DV       LT RE E +  +++G +  ++A +L IS+ TV N+  SI +K   
Sbjct: 142 NSYNIMDVSDSAYATLTAREQEIMRLLAQGNSVRKVAQMLFISKKTVENHRTSIFKKLNI 201

Query: 231 KTRSGAIAYAVRNNIV 246
                 + YA R  ++
Sbjct: 202 NNSVELVHYATRIGLI 217


>gi|296105249|ref|YP_003615395.1| hypothetical protein ECL_04922 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059708|gb|ADF64446.1| hypothetical protein ECL_04922 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 196

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             L+ R+ E L  ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 135 LSLSERQREVLKLLAAGESNKEIGRTLNISAATVKAHLESLFRRLDVKNRTQAA 188


>gi|239918649|ref|YP_002958207.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415136|ref|ZP_06246878.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839856|gb|ACS31653.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 222

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 7/171 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  M +   D          E      L    F +    +       + Y      
Sbjct: 48  PDVVLMDMQMPRMDGIEATTAIMAEAPEVRVLAITTFSSEAYLVPALRAGASGYLVKDAP 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195
              +   +  +     +       E+      Q+   +S   H   + E LT RE+E +T
Sbjct: 108 PEEVVEAVRQVHRGDAVFSPRVARELIETVTQQSERRESAAAHALTELEELTPRELEVVT 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G ++ EIA  L ++  TV +++  IM K   + R   +  A R  +V
Sbjct: 168 ELAKGSSNAEIAQALFLAEATVKSHLGKIMDKWQARDRVQVLIRASRAGLV 218


>gi|26250153|ref|NP_756193.1| putative transcriptional regulator YhjB [Escherichia coli CFT073]
 gi|110643767|ref|YP_671497.1| transcriptional regulator YhjB [Escherichia coli 536]
 gi|191170596|ref|ZP_03032149.1| transcriptional regulator, LuxR family [Escherichia coli F11]
 gi|227883679|ref|ZP_04001484.1| transcriptional regulator YhjB [Escherichia coli 83972]
 gi|300971326|ref|ZP_07171407.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|300976738|ref|ZP_07173557.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|301046587|ref|ZP_07193728.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|26110582|gb|AAN82767.1|AE016768_185 Hypothetical transcriptional regulator yhjB [Escherichia coli
           CFT073]
 gi|110345359|gb|ABG71596.1| hypothetical transcriptional regulator YhjB [Escherichia coli 536]
 gi|190909404|gb|EDV68990.1| transcriptional regulator, LuxR family [Escherichia coli F11]
 gi|222035230|emb|CAP77975.1| HTH-type transcriptional regulator yhjB [Escherichia coli LF82]
 gi|227839259|gb|EEJ49725.1| transcriptional regulator YhjB [Escherichia coli 83972]
 gi|281180558|dbj|BAI56888.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|300301451|gb|EFJ57836.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|300308475|gb|EFJ62995.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|300411311|gb|EFJ94849.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|307555623|gb|ADN48398.1| hypothetical transcriptional regulator YhjB [Escherichia coli ABU
           83972]
 gi|312948079|gb|ADR28906.1| transcriptional regulator YhjB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315295417|gb|EFU54747.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1]
 gi|323966038|gb|EGB61478.1| luxR family protein regulatory protein [Escherichia coli M863]
 gi|324007328|gb|EGB76547.1| transcriptional regulator, LuxR family [Escherichia coli MS 57-2]
 gi|324014189|gb|EGB83408.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1]
 gi|327251163|gb|EGE62856.1| transcriptional regulator, LuxR family protein [Escherichia coli
           STEC_7v]
          Length = 200

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|294102196|ref|YP_003554054.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617176|gb|ADE57330.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 225

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK----YYNVLQRPTELFCPVFHTLPENITPPAGMDN--R 129
            +V    P  ++  + +   D          +     F  +     EN            
Sbjct: 43  DVVKKTAPHVVMLDIRMPRADGIEVVTTLRKEGCKSAFVVITALDAENQITRVSRAGIEG 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   +  +A +   L  +    R +         L+A+     F  +     K   LT +
Sbjct: 103 YVLKSSGLAELLYALRTVASGERYVDP-------LIASKLLKSFSPHAEFKSKIETLTIK 155

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E E L W+S G +S E+   + +S  TV N++  I++K   + +S AIA A +  +
Sbjct: 156 EKEVLYWVSHGLSSREVGRRMILSNKTVQNHMCQILKKLDVQEKSQAIALAWKWGL 211


>gi|167563389|ref|ZP_02356305.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           oklahomensis EO147]
          Length = 199

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  ++ G ++ EIA    ++ +TV  ++ +I++K    +R     YAV   
Sbjct: 131 QLTPREHDIVRALARGTSNKEIAREFDVAESTVKIHVQNILKKLNLTSRVQIAVYAVERG 190

Query: 245 I 245
           +
Sbjct: 191 L 191


>gi|149925601|ref|ZP_01913865.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149825718|gb|EDM84926.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 237

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++    T     D R   +   + ++R G   + P     L +R   +        +
Sbjct: 102 VISSIEAGATGYLTKDTRTADILDRLKQLRAGGSPISPVIARRLLNRFRGVATP-----D 156

Query: 172 MFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +      ++F  L+ RE + L  +++G    EIA ILG+S NT++ YI  I +K A 
Sbjct: 157 QLPTSKTAVNQEFTPLSEREQQVLEMVAKGFMQAEIADILGVSINTISTYIKRIYKKLAV 216

Query: 231 KTRSGAIAYAVRNNIV 246
            +R+ A+  A    ++
Sbjct: 217 NSRTSAVHRANALGLI 232


>gi|188994767|ref|YP_001929019.1| probable DNA-binding response regulator LuxR family [Porphyromonas
           gingivalis ATCC 33277]
 gi|148524521|dbj|BAF63428.1| fimR [Porphyromonas gingivalis ATCC 33277]
 gi|188594447|dbj|BAG33422.1| probable DNA-binding response regulator LuxR family [Porphyromonas
           gingivalis ATCC 33277]
          Length = 227

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E + ++ +G ++ E A  + +S  TV  + ++I+ K      +  I YAV++ 
Sbjct: 163 ELTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFSNAAELIRYAVKSG 222

Query: 245 IV 246
           +V
Sbjct: 223 LV 224


>gi|111225726|ref|YP_716520.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111153258|emb|CAJ65009.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 203

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 11/133 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +       R   L   V R   G+ +               +  L   + +
Sbjct: 77  VLAAVQAGASGYVVKSARPEELVDAVRRTAAGVPVFSAG-----------LAALVLGEMS 125

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE+E L  I++G ++ + A  LG+S  TV N++ +++ K   +
Sbjct: 126 RAARDVTATPSTPRLTAREIEVLRLIAKGLSARDAAARLGVSHRTVQNHVHNVLGKLQLR 185

Query: 232 TRSGAIAYAVRNN 244
            R     +A+R  
Sbjct: 186 NRVELTRFALREG 198


>gi|158318331|ref|YP_001510839.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113736|gb|ABW15933.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 249

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +    +       R   L   V R   G+ +       +    L E    A    N
Sbjct: 118 VLEAVKAGASGYLLKSARPEELVDAVRRTARGVAVFTAG---LAALVLGENSRAAR---N 171

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT REVE L  +++G ++ + A  LG+S  TV N++ +++ K   +
Sbjct: 172 SGSRSGPGSSTAPRLTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLGKLQLR 231

Query: 232 TRSGAIAYAVRNN 244
            R     +AVR  
Sbjct: 232 NRVELTRFAVREG 244


>gi|302331370|gb|ADL21564.1| LuxR family transcriptional regulator [Corynebacterium
           pseudotuberculosis 1002]
          Length = 279

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 15/203 (7%)

Query: 56  VGASHFL---LVRWDL---FQEQKLDSIVSSDWP-FDLVRCMALSEKDKYYNVLQRPTEL 108
           VG S ++   ++  DL    Q++ L SIV+        VR +          +  +  E 
Sbjct: 75  VGVSDYMRANVISHDLDPVIQDEGLHSIVAVPVIVHREVRGVLYVGVHSPVRLGDKVIEE 134

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI------GLMLLFPKGRIILRDRLWEI 162
                  L +++   A    R   L     + R+        +        +L +R+   
Sbjct: 135 VTMTARVLEQDLAIIA-ASRRSEGLRGAAKQGRMMNGAEWEQIRATHSKLRMLANRIDHE 193

Query: 163 GLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            L    +    +    VH  +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+
Sbjct: 194 ELRQELEELCDQMVAPVHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYL 253

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
            S+MRK    TR  A+  A R  
Sbjct: 254 RSVMRKLGAHTRYEAVNAARRIG 276


>gi|256025755|ref|ZP_05439620.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia sp. 4_1_40B]
          Length = 200

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|254410153|ref|ZP_05023933.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183189|gb|EDX78173.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 237

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 23/188 (12%)

Query: 80  SDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHT-----LPENITPPAGMDNRYC 131
            + P  +V  + + E D       +   P+    P         L + I   +   + Y 
Sbjct: 43  KNPPDLVVSDVMMPEMDGIEFCRRLRATPSGQLMPFIFLSGKGELEDRIHGHSIGADDYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA-------AYQANMFKSYDVHWGKDF 184
               +   +   +     + R I    +  + L A       A QA   ++ +V   ++ 
Sbjct: 103 IKPVNPRELAAKIEAQLERTRRIHALIVQLMQLNASSAVTELANQAKTAQATEVSAPQEE 162

Query: 185 E--------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           E        LT  E      + +G T+ +I+  L IS  TV  +++SI+ K     R+  
Sbjct: 163 ETVTPTPLPLTPAEERVFWEVIQGLTNKQISNRLFISPRTVQTHLSSILNKLKLGNRAQL 222

Query: 237 IAYAVRNN 244
           I +A  N 
Sbjct: 223 IRFAYENG 230


>gi|16125402|ref|NP_419966.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221234145|ref|YP_002516581.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13422468|gb|AAK23134.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220963317|gb|ACL94673.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 201

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE E L    EG+++ +IA +L +S  TV NY++   +K     R  A   A
Sbjct: 136 AEPDPLTDREREILRLAEEGRSNKDIADVLDLSPGTVRNYLSEAAQKLGAANRVEAGRIA 195

Query: 241 VRNN 244
             N 
Sbjct: 196 RSNG 199


>gi|298244378|ref|ZP_06968184.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551859|gb|EFH85724.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 212

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 8/161 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA---GMDNRYCSLTFDVARIRIG 143
           VR    S  +    V +R  E    +  T  +              Y     +   ++  
Sbjct: 55  VRLPDSSGIEVCRTVTERFPETAVIILTTFTDETLVAECIQAGARGYIVKDIERFDLKRS 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      I      +   +   Q       +     +  L+ +++  L ++++G +S
Sbjct: 115 IRAVARGEGAIDP----KAAAVLMTQLRRAPQTNPELSLE-SLSSQQLVILRFVAQGLSS 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L +S NT+  Y+  I+ +   K R+ A+  AV++ 
Sbjct: 170 REIAKKLYLSENTIKGYVQEILHRLNVKNRTEAVMVAVKHG 210


>gi|253688783|ref|YP_003017973.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755361|gb|ACT13437.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 210

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 18/194 (9%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           L+V       + +  ++++D  FD++   +   +         P   L       L    
Sbjct: 10  LIVDDHPLMRRGIRQLLATDAIFDVIGEASNGMEALSLANRDSPDIILLDLNMKGLSGLD 69

Query: 121 TPPAGMDNRYCS----LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           T  A   +  C+    LT   A   I  ++       +L+D   E  LL A +++   S 
Sbjct: 70  TLHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPE-HLLDAIRSSDAFSD 128

Query: 177 DVH------------WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            V                   LT RE++ L  ++ G ++ +IA +L IS  TV  +I ++
Sbjct: 129 QVRDVLRHRIAIQETPSPFTVLTERELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNM 188

Query: 225 MRKTATKTRSGAIA 238
           +RK   ++R  A  
Sbjct: 189 LRKLNVRSRVAATV 202


>gi|163731572|ref|ZP_02139019.1| transcription regulatory protein degU, putative [Roseobacter
           litoralis Och 149]
 gi|161395026|gb|EDQ19348.1| transcription regulatory protein degU, putative [Roseobacter
           litoralis Och 149]
          Length = 218

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 11/141 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQ 169
           V    P        M +    ++  ++   +G +L     + +  D + +    ++A  Q
Sbjct: 76  VLERRPGTRILILSMHDSAEYISSALSHGAMGYIL-----KDVPTDEIKQAIDAVMAGDQ 130

Query: 170 ANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                +      K+ E    LTGRE   L  +++GK++ ++A  L IS  TV  +  +I 
Sbjct: 131 YLCTGASGSLQPKEGEVREALTGREQTILLQLAQGKSNRDVATALDISVRTVETHRKNIK 190

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    + +G   YA+ + ++
Sbjct: 191 RKLGISSTAGLTRYAMEHGVL 211


>gi|159185689|ref|NP_357289.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159140823|gb|AAK90074.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 256

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A  AN   +      +   LT REV+ L  + +G  +  IA  L +S NTV  ++ +I +
Sbjct: 169 AVIANRADALAASRSEVAALTTREVQILDLLCKGTQNKIIADRLHLSENTVKVHVRNIYK 228

Query: 227 KTATKTRSGAIAY 239
           K   + R+ A + 
Sbjct: 229 KMNVRNRTEAASR 241


>gi|57865448|ref|YP_189537.1| DegU family transcriptional regulator [Staphylococcus epidermidis
           RP62A]
 gi|251811904|ref|ZP_04826377.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875194|ref|ZP_06284067.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367099|ref|ZP_06613771.1| LuxR family DNA-binding response regulator [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81673409|sp|Q5HLK6|NREC_STAEQ RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|57636106|gb|AAW52894.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           epidermidis RP62A]
 gi|251804583|gb|EES57240.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295959|gb|EFA88480.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318829|gb|EFE59203.1| LuxR family DNA-binding response regulator [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329734541|gb|EGG70852.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU045]
          Length = 218

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          ++    L   V  +  G   +           +     L     N 
Sbjct: 91  FHVLKSGAKGYILKNSPDEQLILAVRTVYQGETYVD----------MKLTTSLVNEFVNQ 140

Query: 173 FKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            ++ +V    D    L+ RE+E L  I++G  + +IA  L +S  TV  +   IM K   
Sbjct: 141 SQTDEVSSSSDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNL 200

Query: 231 KTRSGAIAYAVRNNIV 246
           K++   + YA++  ++
Sbjct: 201 KSKPELVEYALKKKLL 216


>gi|308049915|ref|YP_003913481.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632105|gb|ADN76407.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 216

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 14/163 (8%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVF----HTLPENITPPAGMD-NRYCSLTF 135
            P  ++  + +     Y  ++  R      PV     H  P  +      D   +   + 
Sbjct: 50  QPDLVLLDLEMPGSHGYSTLIHLRSHFPAVPVVVISAHEDPTTVAKALSYDCQGFIPKSS 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D  ++   L ++      +  +       +A      F++ D+   K  ELT ++   L 
Sbjct: 110 DPDQLAEALQIVLDGDTYLPSN-------MAELAEPSFEANDI-GAKLAELTPQQYRVLQ 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 162 MFAEGMLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 204


>gi|194446637|ref|YP_002042854.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194405300|gb|ACF65522.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 200

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 20/145 (13%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDN----RYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           +   E+        PE       MD     R+  + F+V  +                  
Sbjct: 59  EFCREVLQRTAQQFPEVKIIITAMDGSQKWRHEVMQFNVQAVV----------PRDSDAE 108

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGI 212
            + + L A  +  MF  +D     + E      L+ R+ E L  ++ G+++ +I   L I
Sbjct: 109 TFVLALNAVARGMMFLPWDWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNI 168

Query: 213 SRNTVNNYIASIMRKTATKTRSGAI 237
           S  TV  ++ S+ R+   K R+ A 
Sbjct: 169 STGTVKAHLESLYRRLDVKNRTQAA 193


>gi|302554181|ref|ZP_07306523.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471799|gb|EFL34892.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 216

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 7/168 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRYCSLTFDV 137
           P  ++  + +   D      Q   E    V      ++            + +     + 
Sbjct: 51  PDLVLMDVQMPRLDGVSATRQVVAEGLADVLVLTTFDLDEYVFGALRAGASGFLLKNTEA 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +  +     +I         L+A + A   +           LT RE E L+ +
Sbjct: 111 RQLLEAVRTVARGEGLISPAVTRR--LIAEFAAKPAREPTADLSVLDRLTRREREVLSCL 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++  IA  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 169 GEGLSNAGIAERLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 216


>gi|297563788|ref|YP_003682761.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848237|gb|ADH70255.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 232

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 8/222 (3%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
               P R  L      +     + +      E VG +   L    L +E + D +V  D 
Sbjct: 16  GGEAPIRVLLADDQAMVRTGFRYMLAAEDGVEVVGEAGDGLEAVRLARELRPD-VVLMDI 74

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
               V  +  + +     V      +    F           G    +       A +  
Sbjct: 75  RMPGVDGLEATRRLAGPGVADPLRVVVVTTFDLDEYVHAAITGGAVGFLLKDAGPALLVE 134

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +        ++          +       F +       D  LT RE++ +  ++ G T
Sbjct: 135 AVRAAARGDALVSP-------RVTVRLLRHFAAAPRSAPGDGGLTVRELDIVRAVARGLT 187

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + E+A  L ++ +TV  ++AS+  K   + R    A+A RN 
Sbjct: 188 NTEVAGELFVTVSTVKTHLASVQAKLGARNRVEVAAWAYRNG 229


>gi|256375752|ref|YP_003099412.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920055|gb|ACU35566.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 214

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 72/215 (33%), Gaps = 12/215 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++  D        +  L E   A   + V  +      L S V +  P   +  + +  
Sbjct: 4   RLVLADDEPQLRRGLRVLLE---ADGRVEVVAEAGDGAALLSAVRATAPDVALVDVQMPG 60

Query: 95  KDKYYNVL-----QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            D    +        P  +       L + +     +  +   L        +  +L   
Sbjct: 61  TDGLSALRVLLGRPDPPAVAVLTTFDLDDYVATALDVGAQGFLLKDAEPEALVRAVLDLA 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G  +L  R+    L       + +           L+ RE + L  +S+G  +  IA  
Sbjct: 121 AGGAVLDPRIAARLLPRLRAGRLLRPNPQLDA----LSTRERQVLELLSDGLPNAAIATE 176

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LG+S  TV +Y+++++ K   + R  A   A +  
Sbjct: 177 LGLSEATVKSYVSTVLMKLGVENRVQAALAAHQVG 211


>gi|212635701|ref|YP_002312226.1| regulatory protein LuxR [Shewanella piezotolerans WP3]
 gi|212557185|gb|ACJ29639.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3]
          Length = 211

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 65/176 (36%), Gaps = 15/176 (8%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            D F E ++  ++      D+ +   + +K        R   +  P        +     
Sbjct: 41  IDNFTENRVGLVLIDLSSVDIQKAYQIQKKLDKERSGVRVVFIHYPQQVDARFLVQNNIT 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   + D   I +  ++   +G+  + D      L            DV   ++ +
Sbjct: 101 AGVFYSDASLDSIGIGMSKIV---QGQTSIPDEFSRAHL-----------NDVEEDEESD 146

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE E L  +  G T+ +IA  L +S +T+  ++    RK    +R  AIA+A
Sbjct: 147 TLTMREREVLQVLRSGSTNIDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 202


>gi|204929147|ref|ZP_03220290.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321691|gb|EDZ06890.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 215

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   
Sbjct: 139 RERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNV 198

Query: 231 KTRSGAIA 238
           ++R  A  
Sbjct: 199 RSRVAATI 206


>gi|149275963|ref|ZP_01882108.1| response regulator [Pedobacter sp. BAL39]
 gi|149233391|gb|EDM38765.1| response regulator [Pedobacter sp. BAL39]
          Length = 220

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 9/186 (4%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           LL + D   + K D IV  D     +  M  + K K  +   R   +     H   ++I+
Sbjct: 39  LLKQMDACGDDKPD-IVLMDLNMPEMNGMEATRKLKVDHPDVR---VIVLSVHGEEKHIS 94

Query: 122 PPAGMD-NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  N Y +   ++  ++  +   +  G       L  +   +    N  K +D   
Sbjct: 95  RMIQQGVNGYIAKNSELTELKNAIEATYNNGFYFNELVLKTLQSGSLLNKNNVKGFDAAS 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E L  I +  T+ EIA  L IS  TV+ +  +++ KT  K  +G + +A
Sbjct: 155 S----LTQREKEILRLICDECTTAEIAEALSISLRTVDGHRNNLLVKTGAKNVAGLVVFA 210

Query: 241 VRNNIV 246
            +N ++
Sbjct: 211 FKNKLI 216


>gi|38234861|ref|NP_940628.1| two-component response regulator ChrA [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38201125|emb|CAE50849.1| two-component response regulator ChrA [Corynebacterium diphtheriae]
          Length = 199

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 18/166 (10%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARI 140
           +V  + +   D         +    PV       T  + +         Y       + +
Sbjct: 47  VVTDIQMPGTDGITLTRALASAGGPPVLILTTYDTEADILAAVEAGAMGYLLKDAPESAL 106

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++  F   R            LA   AN              L+ RE+E L  + +G
Sbjct: 107 HDAVIATFEGRRT-----------LAPKVANALMQR--VSKPRQALSAREIEILQNLEQG 153

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ ++A  L IS  TV  ++  I  K     R+ AI  A +  ++
Sbjct: 154 LSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199


>gi|88859041|ref|ZP_01133682.1| putative regulator in two-component regulatory system; LuxR family
           protein [Pseudoalteromonas tunicata D2]
 gi|88819267|gb|EAR29081.1| putative regulator in two-component regulatory system; LuxR family
           protein [Pseudoalteromonas tunicata D2]
          Length = 217

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT ++ + L+++ EG  + +IA  L IS  TV  +I +I RK     R+ A+  A +  +
Sbjct: 151 LTPQQYKVLSYLHEGLLNKQIAYELHISEATVKAHITAIFRKLGVYNRTQAVLIASKLQL 210


>gi|86136672|ref|ZP_01055251.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
 gi|85827546|gb|EAQ47742.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
          Length = 214

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 16/163 (9%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAG-MDNRYCSLTFDVARIRIG 143
           +    L        +L+R  E    +   H  PE I+         Y         I+  
Sbjct: 58  LNMPRLGGLSATEMILERLPETRIVILTMHDSPEYISTALSHGAMGYILKDVPTEEIKQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +      EI L         KS +        LTGRE   L  +++GK++
Sbjct: 118 IDTVMAGERYLCTGA--EIAL-------KPKSGEAREA----LTGREQTILLELAQGKSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 165 KDVAHSLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|307330982|ref|ZP_07610113.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883368|gb|EFN14423.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 300

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 1/226 (0%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           S  S  P R  L      +    +  +      + VG +       +L +  + D +V  
Sbjct: 71  SSGSAAPIRVLLADDQRLVRSAFAMLVSSARDMDVVGQAGTGREAVELARTARADLVVM- 129

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           D     +  +  + +      L     L    + T    +       + +       A +
Sbjct: 130 DIRMPDLDGIEATRRIAADEDLAGVKVLVLTTYDTDEHIVEALRAGASGFLVKDTRPAEL 189

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +     ++       +        +              L+ RE + L  ++ G
Sbjct: 190 LDAIRTVAAGESLLSPGPTARLIARVLRLPDAPPPGAPAPAALAALSERERQVLALVARG 249

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + E A  LG+S  T   +++ IM K   + R+  +  A  + +V
Sbjct: 250 LNNAEAAQTLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 295


>gi|300728575|ref|ZP_07061933.1| transcriptional regulator [Prevotella bryantii B14]
 gi|299774144|gb|EFI70778.1| transcriptional regulator [Prevotella bryantii B14]
          Length = 213

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 42/92 (45%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           ++D + +   +      +     +       LT  E+E L  I++GKT+ EIA     S 
Sbjct: 115 IQDAVQKRRYICHRATEILIDSQLKEEPATNLTSTEIEILRSIAQGKTTKEIAAERYSSI 174

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +T+N +  +I +K    T   A+ YA R  +V
Sbjct: 175 HTINTHRKNIFKKLKVNTAHEAVKYAFRAGLV 206


>gi|260777662|ref|ZP_05886555.1| nitrate/nitrite response regulator protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605675|gb|EEX31960.1| nitrate/nitrite response regulator protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 210

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 40/85 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+  L      +   A      +       +LT RE++ L  +++G  + +IA  L IS
Sbjct: 116 LLKSSLQGNKAYSKEVAKYLAERENISDVFDDLTDREMQILREVAKGYRNKQIADSLFIS 175

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 176 ESTVKVHMKSLLKKLKVPSRTAATV 200


>gi|256826142|ref|YP_003150102.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256689535|gb|ACV07337.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 222

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 8/180 (4%)

Query: 72  QKLDSIVSSDWPFDLVRCM--ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           ++ D +  S    D+       L+   +          +    F T    +T      + 
Sbjct: 41  RRHDHVAPSILLLDIQMPTLDGLAATQRLITAGTASKIIILTTFDTDEYVLTAIESGASG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----E 185
           +         +   +  +     +I         L   ++     S       D     E
Sbjct: 101 FLVKNTAPDDVVAAIRTVHDGDAVISPGPTRR--LFTTFRKRPGGSAADASPTDIRLADE 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G+T+ EI   L ++  T+  +I ++  KT ++ R     +A+R  I
Sbjct: 159 LTPRECDILALVARGRTNQEICDELWLTMPTIKTHIGNLRAKTQSRDRVQLALFALRVGI 218


>gi|29828913|ref|NP_823547.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|15824126|dbj|BAB69292.1| two-compnent system regulatory protein [Streptomyces avermitilis]
 gi|29606018|dbj|BAC70082.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 218

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE+E LT +S+  ++ +I+  L I+  TV  ++ +I  K   ++R  A+  AV 
Sbjct: 151 QDKLTRREIEILTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVS 210

Query: 243 NNIV 246
             ++
Sbjct: 211 IGLI 214


>gi|117927726|ref|YP_872277.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648189|gb|ABK52291.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 225

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E   L  I EG T+ +I   L ++  TV NY++SI+ K   + R+ A   AV + 
Sbjct: 159 LTEQERRVLELIGEGLTNRQIGERLFLAEKTVKNYVSSILAKLGLQRRTQAAVLAVEHR 217


>gi|288572830|ref|ZP_06391187.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568571|gb|EFC90128.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 215

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 9/176 (5%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           Q    +V  D     +  +  S + K         ++     H     I           
Sbjct: 45  QHHPDVVVMDVTMPKMNGIEASRRIKSSLGD---VKILALSMHADKRLIAEILKAGASGY 101

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGRE 190
           +L    +   I  + +   G   L  ++  I        +  K  D     +   L+ RE
Sbjct: 102 ALKEGSSEELIRAIHIVSSGETYLSPKIASI-----LIKDYLKLLDTAVPSRASLLSDRE 156

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  +++G ++ E+A  L IS+NTV+ +   IM K      +  I +A+R  ++
Sbjct: 157 REVLALLAKGSSTKEVASSLHISKNTVDTHRRRIMEKLDCGNIAELIRFAIREGLI 212


>gi|167646079|ref|YP_001683742.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167348509|gb|ABZ71244.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 249

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S  VH   D  L  RE++ L   ++G T  E A  L +SR  V  +++    K  T  ++
Sbjct: 176 SLPVHGTSDAGLNAREMQVLRLAAQGLTEMETAARLKLSRRGVQFHLSRAGAKLDTTNKT 235

Query: 235 GAIAYAVRNNIV 246
            A+A A+   ++
Sbjct: 236 AAVARAISLGLI 247


>gi|29828005|ref|NP_822639.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29605107|dbj|BAC69174.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 221

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +A + +      L     +    F              + +     
Sbjct: 49  DVVLMDIRMPFLDGLAATRRITDDADLGHVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++       +    A ++    + D   G    LT RE E + 
Sbjct: 109 EPDELLRAVRAVVQGDALLSPGVTRRLISEFAARSKAPAAADSLAG----LTEREREVMA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G ++DEI   L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 165 LVGFGLSNDEIGRRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|329946343|ref|ZP_08293910.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328527319|gb|EGF54317.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 232

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 14/186 (7%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           + +R            V    P   V  +   + D Y     R     F     T PE +
Sbjct: 56  MDIRMPALDGISATHAVLGSHPDLKVLILTTFDLDDYLVAAMRAGASGFLLKDATAPELL 115

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                +      +     R              +L+      G       ++ ++  VH 
Sbjct: 116 AGIRAVARGDSVVAPSTTR-------------RLLKQWFAPSGPTGPGGLSVRRADAVHT 162

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE E +T +    ++ EIA  L ++ +T+ +++  I+ K   + R+  I  A
Sbjct: 163 ESIGALSDREKEIVTLVGRAMSNAEIAQHLVLAESTIKSHLNRILHKLELRDRAQLIVLA 222

Query: 241 VRNNIV 246
             + +V
Sbjct: 223 YESGLV 228


>gi|284045352|ref|YP_003395692.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949573|gb|ADB52317.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 592

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 18/169 (10%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI- 140
           W  D      + E   +         L       L E  T              DV+ + 
Sbjct: 3   WSADAPT---VDEAVAWVLARPDREPLRQDASGLLEEAPTLVTYAHAALELELDDVSFLW 59

Query: 141 ---RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
              R+GL+ ++ +   +     W   L AA               +F LT RE+  LT +
Sbjct: 60  ESPRLGLLQVWIEPVRVPSGDEWGRELTAA-----------PARNEFGLTRRELHVLTLL 108

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  LG +  T+  ++A ++ K    +RSGA A AV   ++
Sbjct: 109 AGGSSNGEIAAQLGTAPRTIGAHVARLLEKLDQSSRSGAAAVAVERGLL 157


>gi|254485722|ref|ZP_05098927.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           GAI101]
 gi|214042591|gb|EEB83229.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           GAI101]
          Length = 239

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 21/237 (8%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
            T   +LA +   D          AL  ++G +H ++  W    +   D      +  + 
Sbjct: 5   LTLDQILAALEKTDTLDGLQTATEALRTFLGVAH-IVYHWV---DSAGDQYGCGTYSPEW 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTFD 136
                     +   V+    + F PV                      G+ N+  ++   
Sbjct: 61  RSRYLDQNYLRVDPVVSGCFQRFHPVDWKRLDWSSKAARALLTEAIDHGVGNQGFTVPIR 120

Query: 137 VARIRIGLMLLFP-----KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGR 189
               +  L  +         +   +    ++ L+A Y       ++     +    L+ R
Sbjct: 121 GPNGQFALFTVNDNCTDDAWQAFTQANRRDLILIAHYFNQKALEFEPGRTPEVAQALSPR 180

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ +T ++ G    ++A  L IS +T+  YI S   K      + A+A A+   ++
Sbjct: 181 EIDAMTLLAIGYNRAQVADSLSISEHTLRVYIESARFKLGAMNTTHAVARALSRGLI 237


>gi|161616659|ref|YP_001590624.1| hypothetical protein SPAB_04476 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168232438|ref|ZP_02657496.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235205|ref|ZP_02660263.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241764|ref|ZP_02666696.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260660|ref|ZP_02682633.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168818573|ref|ZP_02830573.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194449703|ref|YP_002047634.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194468644|ref|ZP_03074628.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194737459|ref|YP_002116543.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250551|ref|YP_002148534.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204928537|ref|ZP_03219736.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|224585403|ref|YP_002639202.1| hypothetical protein SPC_3680 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238910366|ref|ZP_04654203.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|161366023|gb|ABX69791.1| hypothetical protein SPAB_04476 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408007|gb|ACF68226.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455008|gb|EDX43847.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712961|gb|ACF92182.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197214254|gb|ACH51651.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197291362|gb|EDY30714.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204321970|gb|EDZ07168.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205333300|gb|EDZ20064.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339085|gb|EDZ25849.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344401|gb|EDZ31165.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350320|gb|EDZ36951.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224469931|gb|ACN47761.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|320088025|emb|CBY97787.1| putative HTH-type transcriptional regulator yhjB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322614001|gb|EFY10937.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617893|gb|EFY14786.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625492|gb|EFY22318.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629957|gb|EFY26730.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632154|gb|EFY28905.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636496|gb|EFY33203.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643130|gb|EFY39704.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644649|gb|EFY41185.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651327|gb|EFY47711.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652757|gb|EFY49096.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659058|gb|EFY55310.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663240|gb|EFY59444.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668726|gb|EFY64879.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674470|gb|EFY70563.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678323|gb|EFY74384.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682419|gb|EFY78440.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684133|gb|EFY80139.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192311|gb|EFZ77543.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196261|gb|EFZ81413.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201409|gb|EFZ86475.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206481|gb|EFZ91442.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212073|gb|EFZ96900.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216978|gb|EGA01701.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220343|gb|EGA04797.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224391|gb|EGA08680.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228320|gb|EGA12451.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233413|gb|EGA17506.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237126|gb|EGA21193.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243659|gb|EGA27675.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246097|gb|EGA30084.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250877|gb|EGA34755.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257630|gb|EGA41316.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261837|gb|EGA45404.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266106|gb|EGA49597.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268650|gb|EGA52117.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 200

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +   E+   +    PE       MD     L   +      ++         +      +
Sbjct: 59  EFCREVLQRIAQQFPEVKIIITAMDGSQKWLHEVMQFNVQAVVPRDSDAETFV------L 112

Query: 163 GLLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNT 216
            L A  +  MF   D     + E      L+ R+ E L  ++ G+++ +I   L IS  T
Sbjct: 113 ALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTGT 172

Query: 217 VNNYIASIMRKTATKTRSGAI 237
           V  ++ S+ R+   K R+ A 
Sbjct: 173 VKAHLESLYRRLDVKNRTQAA 193


>gi|91213026|ref|YP_543012.1| transcriptional regulator YhjB [Escherichia coli UTI89]
 gi|117625803|ref|YP_859126.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli APEC O1]
 gi|218560595|ref|YP_002393508.1| DNA-binding response regulator in two-component regulatory system
           [Escherichia coli S88]
 gi|237703288|ref|ZP_04533769.1| transcriptional regulator YhjB [Escherichia sp. 3_2_53FAA]
 gi|306816128|ref|ZP_07450266.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli NC101]
 gi|91074600|gb|ABE09481.1| hypothetical transcriptional regulator YhjB [Escherichia coli
           UTI89]
 gi|115514927|gb|ABJ03002.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli APEC O1]
 gi|218367364|emb|CAR05143.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli S88]
 gi|226902552|gb|EEH88811.1| transcriptional regulator YhjB [Escherichia sp. 3_2_53FAA]
 gi|294489845|gb|ADE88601.1| transcriptional regulator, LuxR family [Escherichia coli IHE3034]
 gi|305850524|gb|EFM50981.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli NC101]
 gi|307628599|gb|ADN72903.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli UM146]
 gi|315286211|gb|EFU45647.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3]
 gi|323949761|gb|EGB45645.1| luxR family protein regulatory protein [Escherichia coli H252]
 gi|323954938|gb|EGB50718.1| luxR family protein regulatory protein [Escherichia coli H263]
          Length = 200

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|163751528|ref|ZP_02158750.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica
           KT99]
 gi|161328536|gb|EDP99689.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica
           KT99]
          Length = 209

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 16/137 (11%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           N     G+ +R   LT   A+  +  ++       +L+D   ++ L    QA        
Sbjct: 70  NSLRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKLKQAMQGHRVIS 129

Query: 179 HWGKDF---------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              +D+                LT RE++ L  +++G ++  I+  L IS  TV  ++ +
Sbjct: 130 ESVEDYLYELKDAIDEKDWIDNLTPRELQILQLVAQGMSNRTISEQLHISEGTVKVHVKN 189

Query: 224 IMRKTATKTRSG-AIAY 239
           ++RK   K+R+  A+ Y
Sbjct: 190 LLRKANAKSRTEMAVRY 206


>gi|124002839|ref|ZP_01687691.1| two-component response regulator [Microscilla marina ATCC 23134]
 gi|123992067|gb|EAY31454.1| two-component response regulator [Microscilla marina ATCC 23134]
          Length = 213

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +  G  + EI   L IS  TV N+ A+I+RK   K     + +A+ N++
Sbjct: 153 LTFREKEVLEQVVAGLGNREIGDKLCISTRTVENHRANILRKFGLKNTVELVKFAIENSL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|326796352|ref|YP_004314172.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547116|gb|ADZ92336.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 211

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           K  ELT ++ + L ++ EG  + +IA  L IS  T+  +I +I RK     R+ A+  A
Sbjct: 145 KVAELTPQQFKVLCYLHEGMLNKQIAYELNISEATIKAHITAIFRKLGVNNRTQAVLIA 203


>gi|229181601|ref|ZP_04308926.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228601797|gb|EEK59293.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 189

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E +    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 123 WQEQNPLSDREKEVMLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 182

Query: 240 AVRNNIV 246
           A     +
Sbjct: 183 AEEKGWI 189


>gi|256377110|ref|YP_003100770.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921413|gb|ACU36924.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 223

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 10/136 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D     L   V     G  ++ P            + LLA     
Sbjct: 93  VYRALRHGACGFLLKDMSPALLVEAVRAAAAGTSMISPN---------VTVRLLAHLAPE 143

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                        E LT RE+E +  ++ G+T+DE+A  L +   TV  ++ +  RK A 
Sbjct: 144 RGAERAEESAALVEPLTERELEVVRLVALGRTNDEVAGELHLGVATVKTHLGNAQRKLAA 203

Query: 231 KTRSGAIAYAVRNNIV 246
           + R    A+A R  +V
Sbjct: 204 RNRVEVAAWAWRTGLV 219


>gi|134103671|ref|YP_001109332.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004794|ref|ZP_06562767.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916294|emb|CAM06407.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 40/84 (47%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           + LL  +  +  +          ELT RE++ +   ++G T+ EI   L +S +TV  ++
Sbjct: 133 VRLLKHFSQSRERVRSAVAPPKEELTERELQVVRATAKGLTNTEIGRELFMSLSTVKTHL 192

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
           A+   K   + R    A+A R+ +
Sbjct: 193 AAAQAKIGARNRVETAAWAWRSGL 216


>gi|62182110|ref|YP_218527.1| putative transcriptional regulator (LuxR/UhpA familiy) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62129743|gb|AAX67446.1| putative transcriptional regulator (LuxR/UhpA familiy) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716598|gb|EFZ08169.1| Putative HTH-type transcriptional regulator yhjB [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 185

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +   E+   +    PE       MD     L   +      ++         +      +
Sbjct: 44  EFCREVLQRIAQQFPEVKIIITAMDGSQKWLHEVMQFNVQAVVPRDSDAETFV------L 97

Query: 163 GLLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNT 216
            L A  +  MF   D     + E      L+ R+ E L  ++ G+++ +I   L IS  T
Sbjct: 98  ALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTGT 157

Query: 217 VNNYIASIMRKTATKTRSGAI 237
           V  ++ S+ R+   K R+ A 
Sbjct: 158 VKAHLESLYRRLDVKNRTQAA 178


>gi|78063892|ref|YP_373800.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383]
 gi|77971777|gb|ABB13156.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. 383]
          Length = 922

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L E+            +     G    L+ REVE L +++ G ++ EIA  L ++  T+ 
Sbjct: 827 LRELARAFEADRASNAAPAARPGTAGNLSAREVEILDYVARGLSNKEIARALRVAPETIK 886

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ +I  K    +R  A+    R+ +
Sbjct: 887 WHLKNIFEKLNVTSRIQAV----RSGL 909


>gi|239988349|ref|ZP_04709013.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 224

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 6/148 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           E  +      RP  +         E++          +      V  +  G+ LL   G 
Sbjct: 67  EVLRGLRASARPPRVAVLTGFGEDEHVRRALRAGAAGFLLKDSAVDELIPGVRLLAAGGS 126

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +    +  +   A  +A               LT RE E L  +  G +++EI   L +
Sbjct: 127 ALSERVVRSLPDGAGKEAAPADPPGARL-----LTAREREVLELLPSGMSNEEIGRRLFL 181

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYA 240
           SR TV ++++S++ K     R  A   A
Sbjct: 182 SRTTVRDHVSSLLAKLGAANRVQAAVIA 209


>gi|223937686|ref|ZP_03629588.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893658|gb|EEF60117.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 454

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 14/182 (7%)

Query: 71  EQKLDSIVSSDWPFDLVRCM--ALSEKDKYYNVLQRPTELFCPVFHTLPENIT-----PP 123
           E+ L  +        LV  +   +   +    +  R  +L  PVF       +       
Sbjct: 278 EEALSRLEHRHPDMILVNRLQPGMRAMELVDKLKARFPQL--PVFTYGIYEDSDQIFIRV 335

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWG 181
           +G+   Y         +   ++  F  G +  ++   +I     Y  + F  +S +    
Sbjct: 336 SGVRTGYIFKRRTPGELLEPILGAFKHGALDSKEVFTQIK---NYFQSFFGGESSEKENL 392

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE++ L  +S+G    EIA  LGIS  TV+N++ +   K    TR+ A    +
Sbjct: 393 AMANLTDRELKVLNCVSKGYLDKEIAHELGISLWTVHNHLKNTYEKLNVHTRTEAALKYL 452

Query: 242 RN 243
           + 
Sbjct: 453 QK 454


>gi|170781574|ref|YP_001709906.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156142|emb|CAQ01282.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 220

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 64/172 (37%), Gaps = 6/172 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +              P  +    F     + T   G  + +     
Sbjct: 49  DVVLLDMRMPVMDGLETVRALFDGTRDAPPRVIVLTTFALDRASATAIRGGASGFLLKDA 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECL 194
             A +   +  +     ++  D L ++     + ++   +        F  L+ RE +  
Sbjct: 109 TPAFLAAAIRAVHAGSAVLAPDELTQL-----FTSDATAAPAPPAPPAFRSLSVREKDVF 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G ++ E+A +  +S +TV  +++SI+ K A + R   + YA  + +V
Sbjct: 164 GHVARGLSNAEVAALEFVSESTVKTHVSSILAKLALRDRVQLVVYAHDHRLV 215


>gi|167645327|ref|YP_001682990.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347757|gb|ABZ70492.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 257

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 41/94 (43%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +   R  E+   A    + ++           LT RE++CL W + GKT  +IA I+GI
Sbjct: 151 ALYAARSDELHGAALRLVSAYRDGCDDDVPPVRLTKREIQCLKWAAAGKTDADIAQIIGI 210

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV  ++ +   K     R+ A+  A     +
Sbjct: 211 AGPTVRFHVQNAALKLRVAGRAQAVHRATGLGYI 244


>gi|312138548|ref|YP_004005884.1| sensor kinase/luxr response regulator fusion [Rhodococcus equi
           103S]
 gi|311887887|emb|CBH47199.1| putative sensor kinase/LuxR response regulator fusion [Rhodococcus
           equi 103S]
          Length = 751

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 17/176 (9%)

Query: 86  LVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           LV  + L               +L   V    PE      G      + T         L
Sbjct: 572 LVEALPLLRALDNQYGGAWCFEQLAWAVVEQDPERAAVFLGAAEVLFTATGSPIEKFQPL 631

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKS----------------YDVHWGKDFELTG 188
           +    +     R+ L +    AA Q  +  +                 +        LT 
Sbjct: 632 VAYHEQCVRRAREALGDNAFDAARQRGVAMNTEEVIAYALGEQPLDVAEPAADSGHNLTR 691

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE++    ++EG T+  IA  L I+  TV  ++  I+ K    +R+   A+ V   
Sbjct: 692 REMQVAELVAEGMTNRAIAERLVIAPRTVEGHVDHILAKLGFTSRTQVAAWMVAQR 747


>gi|297565170|ref|YP_003684142.1| LuxR family transcriptional regulator [Meiothermus silvanus DSM
           9946]
 gi|296849619|gb|ADH62634.1| transcriptional regulator, LuxR family [Meiothermus silvanus DSM
           9946]
          Length = 768

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 38/80 (47%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +A               +   LT RE++ +  I+ G T+ +IA  L IS+ TV+ ++ +
Sbjct: 682 AVALALGRGAPLPIAQVQRPGGLTDREIQVVWEIASGLTNRQIAEKLEISQRTVDAHVQN 741

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           I+ K   + R+    +A R+
Sbjct: 742 ILNKLGVEKRTQIAVWASRH 761


>gi|257790333|ref|YP_003180939.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|317489781|ref|ZP_07948280.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|257474230|gb|ACV54550.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|316911127|gb|EFV32737.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 213

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE   +  ++EG  + EIA  L +S  TV N+I++I++K   K R+  +    R
Sbjct: 155 LTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211


>gi|269955518|ref|YP_003325307.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304199|gb|ACZ29749.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 226

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y +       +   ++ +     +         G +
Sbjct: 89  RFLALSVSDAAEDVVAVIRSGARGYVTKNISARDLSGAVVQVAGGDAVFSP---RLAGFV 145

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                       V   +   L+ RE E +  I+ G +  E+A  L IS  TV  ++++++
Sbjct: 146 LDAFGTAAGEVSVADDELDRLSRREQEVMRLIARGYSYREVASELFISIKTVETHVSAVL 205

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    +R     +A   +I+
Sbjct: 206 RKLQLSSRYELTRWAAARHIL 226


>gi|226304850|ref|YP_002764808.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183965|dbj|BAH32069.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 219

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I++G +   IA  L ++ +TV  ++  +  K     R  A+A A+R  +
Sbjct: 158 LSAREREVLGLIAQGASIPTIASQLFLAPSTVKTHVQRLYEKLGVNDRGAAVAAAMRQGL 217

Query: 246 V 246
           +
Sbjct: 218 L 218


>gi|56697420|ref|YP_167788.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56679157|gb|AAV95823.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 216

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 57/136 (41%), Gaps = 4/136 (2%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD---RLWEIGLLAAYQA 170
             +P+       M +    ++  ++   +G +L       I +     +     L     
Sbjct: 75  EQMPDTRILILSMHDSPEYISTALSHGAMGYVLKDVPTEEIKQAIDAVMRGERYLCTGAK 134

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +  +    ++  LTGRE   L  +++GK++ E+A+ L IS  TV  +  +I RK   
Sbjct: 135 GSLEPKEGEEARE-ALTGREQTILLQLAQGKSNKEVAIALDISVRTVETHRKNIKRKLGI 193

Query: 231 KTRSGAIAYAVRNNIV 246
            + +G   YA+ + ++
Sbjct: 194 SSTAGLTRYALEHGVL 209


>gi|121603022|ref|YP_980351.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120591991|gb|ABM35430.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 219

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G D  LT R+ E L  +++G ++  IA  L +S +T+ N++ +I+R     TR+ A+  
Sbjct: 148 PGGDESLTPRQYEVLKLLAQGLSNKAIAFKLHLSEHTIRNHVVAILRHFNALTRTEAVMA 207

Query: 240 AVRNNIV 246
           + R  ++
Sbjct: 208 SQRLGLL 214


>gi|308177612|ref|YP_003917018.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307745075|emb|CBT76047.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 205

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 16/172 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNRYCSLT 134
            +V  D    L   M  ++       L +P  +     F    E +         Y    
Sbjct: 49  DVVLCDL--RLGAGMNGAQTTAAIRQLSKPPFVLILTTFDKDSEVLACIEAGAAGYLLKD 106

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                I   +        ++  +    +              +       ELT RE + L
Sbjct: 107 VSAQTIVDSIRQAALGNVVLAPEMTQRV-------------VEGMRRPKVELTKREKDVL 153

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G  + +IA  L +S  TV  ++  I  K    TR+ AI  A    ++
Sbjct: 154 VQLATGAANKQIAKALFVSEATVKTHLVHIFDKLQATTRTDAINKAQDLGLL 205


>gi|326789547|ref|YP_004307368.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium lentocellum DSM 5427]
 gi|326540311|gb|ADZ82170.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium lentocellum DSM 5427]
          Length = 252

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           K ++L+ RE E +  +++G ++ EI   L IS +TV  +  +I  KT  K R+  + 
Sbjct: 193 KQYDLSEREGEVVQLVNDGCSNSEIGEKLSISISTVKKHFYNIYNKTGVKNRTQLLV 249


>gi|282862547|ref|ZP_06271609.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562886|gb|EFB68426.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E LT +S+  ++ +I+  L I+  TV  ++ +I  K   ++R  A+  AV   +
Sbjct: 154 LTRREMEILTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVSIGL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|281421139|ref|ZP_06252138.1| transcriptional regulator [Prevotella copri DSM 18205]
 gi|281404674|gb|EFB35354.1| transcriptional regulator [Prevotella copri DSM 18205]
          Length = 212

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 4/117 (3%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
             S  F V      LM +    R  +         +      +  +      +   LT  
Sbjct: 93  ASSTQFSVLLKECSLMEIKEAIRFCVASN----RFVCQRMMEVLLAPKQEEQEKINLTKT 148

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+ G T+ EIA     S +TVN +  +I RK        A  YA+R  +V
Sbjct: 149 ETEILKDIALGMTTKEIAEKRFSSFHTVNTHRKNIFRKLGVNNVHEATKYALRAGLV 205


>gi|196234582|ref|ZP_03133403.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196221370|gb|EDY15919.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A      F+       +  +L+ RE E +  ++ G    EI   LGI   TV +Y+ +I
Sbjct: 132 IARKVVQYFRGTTKPARETEKLSPRECEVIELLASGYIYKEIGDKLGIGAETVRSYVKNI 191

Query: 225 MRKTATKTRSGAIAY 239
             K   K R+ A+A 
Sbjct: 192 CIKLQVKNRTEAVAK 206


>gi|200387363|ref|ZP_03213975.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199604461|gb|EDZ03006.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 200

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +   E+        PE       MD     L   +      ++         +      +
Sbjct: 59  EFCREMLQRTAQQFPEVKIIITAMDGSQKWLHEVMQFNVQAVVPRDSDAETFV------L 112

Query: 163 GLLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNT 216
            L A  +  MF   D     + E      L+ R+ E L  ++ G+++ +I   L IS  T
Sbjct: 113 ALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTGT 172

Query: 217 VNNYIASIMRKTATKTRSGAI 237
           V  ++ S+ R+   K R+ A 
Sbjct: 173 VKAHLESLYRRLDVKNRTQAA 193


>gi|167570554|ref|ZP_02363428.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           oklahomensis C6786]
          Length = 233

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  ++ G ++ EIA    ++ +TV  ++ +I++K    +R     YAV   
Sbjct: 165 QLTPREHDIVRALARGTSNKEIAREFDVAESTVKIHVQNILKKLNLTSRVQIAVYAVERG 224

Query: 245 I 245
           +
Sbjct: 225 L 225


>gi|163839729|ref|YP_001624134.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953205|gb|ABY22720.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 209

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 14/177 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYY--NVLQRP-----TELFCPVFHTLPENITPPAGMDNR 129
           ++S+  P  ++  + L   +      V++R        L   V     + ++        
Sbjct: 40  LISTHHPEVVLLDVHLPGGNGGGGREVIERCGNPEVRFLALSVSDAAEDVVSVIRAGARG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +     A I   +        +           LA +  + F        +   L+ R
Sbjct: 100 YVTKAASGAEISAAVRTAASGDAVFSP-------RLAGFVLDAFGGAVPVDDELDRLSAR 152

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E +  I+ G +  E A  L IS  TV  ++++++RK    +R     +A    ++
Sbjct: 153 EREVMRLIARGYSYKETAKELFISVKTVETHVSAVLRKLQLSSRHELTRWAANRRLL 209


>gi|16765574|ref|NP_461189.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62180821|ref|YP_217238.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161613039|ref|YP_001587004.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167992577|ref|ZP_02573674.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168242357|ref|ZP_02667289.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261744|ref|ZP_02683717.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466061|ref|ZP_02699931.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194449116|ref|YP_002046301.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197265746|ref|ZP_03165820.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|200388108|ref|ZP_03214720.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|238913787|ref|ZP_04657624.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|16420784|gb|AAL21148.1| response regulator in two-component regulatory system with NarQ (or
           NarX) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|62128454|gb|AAX66157.1| response regulator in two-component regulatory system with NarQ (or
           NarX) [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362403|gb|ABX66171.1| hypothetical protein SPAB_00746 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407420|gb|ACF67639.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195631360|gb|EDX49920.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197244001|gb|EDY26621.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|199605206|gb|EDZ03751.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205329245|gb|EDZ16009.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205338346|gb|EDZ25110.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205349503|gb|EDZ36134.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|261247456|emb|CBG25283.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994331|gb|ACY89216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158805|emb|CBW18318.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913237|dbj|BAJ37211.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321224903|gb|EFX49966.1| Nitrate/nitrite response regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322715299|gb|EFZ06870.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|332989180|gb|AEF08163.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 215

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   
Sbjct: 139 RERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNV 198

Query: 231 KTRSGAIA 238
           ++R  A  
Sbjct: 199 RSRVAATI 206


>gi|291614188|ref|YP_003524345.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584300|gb|ADE11958.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 235

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 13/175 (7%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYC 131
           +  + P  LV  + +   D    + Q   E      +   +  +  +           Y 
Sbjct: 45  LIKEQPDLLVVDLRMKPMDGLAMIEQLRKEGCDIPAVLLTMSDSEVDLGNAIRAGVRGYL 104

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                   +   +  +     ++      + I +L   Q+       +       LT RE
Sbjct: 105 LKDMAPEEVVDAIRRVAAGELVVAPTMTVKMIDMLRGDQSGQEPKNSLKL-----LTERE 159

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS-GAIAYAVRNN 244
            E L  +S G+++  IA+ L IS +TV  ++  I+ K    +R   A+ +A    
Sbjct: 160 REILQLLSRGESNKAIALTLSISYDTVKQHVRHILNKLNLSSRVKAAVLFAKEQG 214


>gi|83720601|ref|YP_442380.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           E264]
 gi|257138583|ref|ZP_05586845.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           E264]
 gi|83654426|gb|ABC38489.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           E264]
          Length = 233

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K    +R     YAV   
Sbjct: 165 QLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERG 224

Query: 245 I 245
           +
Sbjct: 225 L 225


>gi|260776036|ref|ZP_05884931.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607259|gb|EEX33524.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 212

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 18/209 (8%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
                 +++    E +G++   L   +  +E   D +V  D    L+  +  +   K   
Sbjct: 18  DGFIARLQLEPEIEVIGSASNGLEAIEKVKELTPD-VVLMDVSMPLMNGIDATRLIKEEL 76

Query: 101 VLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
              +   +     H   E I          Y        R+   +  ++           
Sbjct: 77  PEIK---VLMLTMHDNREYIMKVMQAGAVGYMLKEICARRMVQAIKTVYQGSTYF----- 128

Query: 160 WEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
                          S +V     K   L+ RE   L  ++EG +S +IA +L IS  TV
Sbjct: 129 ------CESVTQTLFSQEVIPAAQKPNPLSRREEAVLKLVAEGNSSKKIAALLSISYRTV 182

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  +I +K    + +    YAV   ++
Sbjct: 183 ETHRQNIKQKLDLHSTAELAKYAVEQGLL 211


>gi|239930359|ref|ZP_04687312.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438712|ref|ZP_06578102.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341607|gb|EFE68563.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 3/159 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +      R   L    F              + +         +  G+  +   
Sbjct: 62  GIEATRRIVATGDRTRVLILTTFDLDEYAYAGLRAGASGFLVKDVRPEELLSGIRAVATG 121

Query: 151 GRIILRD---RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             ++      RL +         +  +       +   LT RE E LT I +G T+ EIA
Sbjct: 122 DAVVAPSLTRRLLDAYAHHLPVGDTEEKPTSDDPRLSALTEREREILTVIGKGWTNTEIA 181

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               ++ +TV  ++  I+ KT ++ R  A+  A    +V
Sbjct: 182 TRFHLAESTVKTHVGRILAKTGSRDRIQAVILAYDAKLV 220


>gi|261880312|ref|ZP_06006739.1| LuxR family transcriptional regulator [Prevotella bergensis DSM
           17361]
 gi|270333002|gb|EFA43788.1| LuxR family transcriptional regulator [Prevotella bergensis DSM
           17361]
          Length = 197

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVIL 210
           +  D+     L+    A+          K     EL+GRE+E LT I EG  + EIA  L
Sbjct: 97  LPEDQFVRSLLMLEQHAHAQGRNLPDMPKSLSVKELSGREIEVLTLIVEGYINKEIAHQL 156

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I   TV  +  +IM K   K+ S    YAV +  V
Sbjct: 157 NIGLTTVITHRKNIMDKLGVKSVSALTIYAVMHGYV 192


>gi|111024941|ref|YP_707361.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|40787253|gb|AAR90170.1| putative two-component system response regulator [Rhodococcus sp.
           DK17]
 gi|51338943|dbj|BAD36797.1| hypothetical protein [Rhodococcus sp. RHA1]
 gi|110823920|gb|ABG99203.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 212

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L + + G ++ EIA  L ++RNTV  Y+ S M+K   + R  AIA A    +
Sbjct: 152 LTRREYEVLRFAAMGNSNPEIAQELSLARNTVKTYLQSAMQKLNARNRVEAIARAHELRL 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|320158185|ref|YP_004190563.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
 gi|319933497|gb|ADV88360.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
          Length = 212

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S  +      +LT RE + +T +S G ++ +IA  L +  NTV  ++ +I +K   K R
Sbjct: 135 HSKPISKNVSTKLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNR 194

Query: 234 SGAIAYAVRN 243
             A+ +A  +
Sbjct: 195 VQALIWAKEH 204


>gi|307705686|ref|ZP_07642533.1| DNA-binding response regulator [Streptococcus mitis SK597]
 gi|307620766|gb|EFN99855.1| DNA-binding response regulator [Streptococcus mitis SK597]
          Length = 199

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDASNRTDAANIAKESG 197


>gi|297162710|gb|ADI12422.1| putative luxR family two-component response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 233

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 37/84 (44%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           + + G  A   A +         +   L+ RE E L  I EG T+ +IA  L ++  TV 
Sbjct: 142 MLDPGATARVMARLRGPQPSGPVELERLSPREREILELIGEGLTNRQIAERLFLAEKTVK 201

Query: 219 NYIASIMRKTATKTRSGAIAYAVR 242
           N I++I+ K     R  A   A R
Sbjct: 202 NRISTILSKLGVGRRIQAAVIAER 225


>gi|188585380|ref|YP_001916925.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350067|gb|ACB84337.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 232

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E    +  G ++ +IA  L I++ TV NYI +I  K   K R+ A+ Y  +  
Sbjct: 172 ELTQREIEIAQLMVAGLSNKKIAEKLFITQGTVKNYITNIYSKLGVKERTSAVLYLQKLG 231


>gi|167554141|ref|ZP_02347882.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442551|ref|YP_002041509.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|198244741|ref|YP_002216317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207857666|ref|YP_002244317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194401214|gb|ACF61436.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197939257|gb|ACH76590.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205321582|gb|EDZ09421.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|206709469|emb|CAR33813.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 215

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   
Sbjct: 139 RERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNV 198

Query: 231 KTRSGAIA 238
           ++R  A  
Sbjct: 199 RSRVAATI 206


>gi|150004589|ref|YP_001299333.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254883067|ref|ZP_05255777.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294776747|ref|ZP_06742211.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|319643586|ref|ZP_07998206.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|149933013|gb|ABR39711.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254835860|gb|EET16169.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294449402|gb|EFG17938.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|317384755|gb|EFV65714.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 214

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 159 LWEIGLLAAYQANMFKSYD---VHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISR 214
           + +I  L  Y     K      +H  K + EL+ RE+E L  I++G  + EIA  L IS 
Sbjct: 118 IKDIHQLRQYGHQARKQAADKAMHIEKTEHELSVREIEVLILITKGLINKEIADKLNISL 177

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV ++  +I  K   K+ SG   YAV N  +
Sbjct: 178 TTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 209


>gi|39998319|ref|NP_954270.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39985265|gb|AAR36620.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
 gi|298507253|gb|ADI85976.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 229

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +  I EG TS +IA  L ++  TV N+  ++MRK    ++   + YA R  +
Sbjct: 159 LTPREQQVMRMIVEGATSRQIAESLELTLKTVENHRTNLMRKLQVHSKLELVRYAARLGL 218

Query: 246 V 246
           +
Sbjct: 219 I 219


>gi|103488066|ref|YP_617627.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98978143|gb|ABF54294.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis
           RB2256]
          Length = 250

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 25/231 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           ++           +   T  +G   F L            S++  D+P        +   
Sbjct: 13  ILTASSIDHLHEALTRATRDMGFDRFALSLEIGCGADSSTSLLIHDYPASWADVY-IGFN 71

Query: 96  DKYYNVLQRPTELFCPVF--------------HTLPENITPPAGMDNRYCS---LTFDV- 137
               + ++R  E     F                         G+ + +     L  DV 
Sbjct: 72  LAASDPVRRAAERSVLGFGWRNILDLVPMTEIEKTTFETGRRHGLADGFTVPRHLPGDVT 131

Query: 138 --ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                  GL    P   +I+ + L  + + +A Q + + S  V       LT R+ +C+ 
Sbjct: 132 GSCSFVTGLGKSIPHAMLIVAEMLGAMAIASARQLSGWTSRSV----QPRLTDRQRDCVL 187

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GKT  EI+ IL IS  TV  ++     +  T  R+  I YA+ + ++
Sbjct: 188 WAARGKTDWEISRILDISHETVIQHLKDARERYETHKRASLILYALYDGLI 238


>gi|320193968|gb|EFW68601.1| Putative regulator [Escherichia coli WV_060327]
          Length = 200

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|313677708|ref|YP_004055704.1| ATP-dependent transcriptional regulator, malt-like, luxr family
           [Marivirga tractuosa DSM 4126]
 gi|312944406|gb|ADR23596.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Marivirga tractuosa DSM 4126]
          Length = 548

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 82/230 (35%), Gaps = 23/230 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG--------ASHFLLVRWDLFQEQKLDSI 77
           L T  + L      D       ++  ++E  G        +  F ++   + Q+ KL +I
Sbjct: 321 LITEKEFLEENKKWDRLFDIYTKLIMISEQEGNYKAALDYSKSFRVLNDSILQKDKLQTI 380

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +S +  F            +    ++        +   L +       +      + F  
Sbjct: 381 LSLETSF---------NTKQKEQEIELLKSQEKLIQFKLAQERKNIIVLGVMLILVVFIA 431

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGK-DFELTGREV 191
             I   +       R +L  ++ E+      L+    A +    DV   K D  L+ RE+
Sbjct: 432 IFIYFSIRKKHQLERELLSAQINEMRSQLKMLIDNNSAEITIDQDVFNEKLDNPLSTREI 491

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           E LT+     T+ EIA  + +S NTV  ++ +I  K     R   I +A+
Sbjct: 492 EVLTYALSDLTNQEIADKVFVSVNTVKFHLKNIYEKLGVSNRKEVIKFAL 541


>gi|300859475|ref|YP_003784458.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686929|gb|ADK29851.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302207158|gb|ADL11500.1| Two-component response regulator ChrA [Corynebacterium
           pseudotuberculosis C231]
 gi|302331719|gb|ADL21913.1| Two-component response regulator ChrA [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277411|gb|ADO27310.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Corynebacterium
           pseudotuberculosis I19]
          Length = 199

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 18/166 (10%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSLTFDVARI 140
           +V  + +   D         +    PV       T  + +         Y       A +
Sbjct: 47  VVTDIQMPGTDGITLTRALASAGGPPVLILTTYDTEADILAAVEAGAMGYLLKDAPEAAL 106

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++  F   R +  +            AN              L+ RE+E L  + +G
Sbjct: 107 HDAVVATFEGRRTLAPE-----------VANALMQR--VSKPRQALSTREIEILQNLEQG 153

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ ++A  L IS  TV  ++  I  K     R+ AI  A +  ++
Sbjct: 154 LSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199


>gi|154493926|ref|ZP_02033246.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC
           43184]
 gi|154086186|gb|EDN85231.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC
           43184]
          Length = 202

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L         S +        L+ RE E +  + +G T+ EIA  L +S +TV  +  +I
Sbjct: 114 LERLNTEEVPSEEGENEDQQTLSSREKEIVICVVKGMTNREIADRLYLSTHTVITHRRNI 173

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK    + SG   YA+ N ++
Sbjct: 174 ARKLQVHSASGLTVYAIVNKLI 195


>gi|23098524|ref|NP_691990.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776750|dbj|BAC13025.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 215

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 29/226 (12%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +L R++ ++        +  L E       +G +   +   +   E  +D I+       
Sbjct: 4   ILYRVLLVEDQQIVRQGIKILLEQDKQIKVIGEATNGVEAIEQMMEHTVDVILMD----- 58

Query: 86  LVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            VR   ++  +    +  +      L    F+     +       N +   T D  ++  
Sbjct: 59  -VRMPDMNGIEATRKIKSQWPNVRILMLTTFNDDEYTLQSLKEGANGFLLKTADGKKLID 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISE 199
            +      G ++  +            A       +H  K     +L+ RE      I  
Sbjct: 118 AIHSCMRGGLVLHDE-----------VAAKVMPKLLHTSKRELSVQLSERERVITALIGS 166

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G T+ EIA  L ++  TV NYI SI++KT  + R+    +AVR+ I
Sbjct: 167 GLTNKEIADELFLTIGTVKNYITSILQKTEQRDRTQLAIFAVRHGI 212


>gi|329935276|ref|ZP_08285242.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305099|gb|EGG48958.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 248

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L+ R+ +       +A  F        +DF L+ REVE +  I+ G  + +IA    IS 
Sbjct: 154 LQPRVAQSSKARFARATAFGRRPPDH-RDFGLSSREVEVMDLIASGMNNRQIAATCFISE 212

Query: 215 NTVNNYIASIMRKTATKTRSGAIAY 239
            TV N+I  I  K  + +RS AIA+
Sbjct: 213 KTVKNHINRIFAKLHSASRSEAIAH 237


>gi|289762657|ref|ZP_06522035.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|289710163|gb|EFD74179.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
          Length = 885

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 818 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 876


>gi|258508232|ref|YP_003170983.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus GG]
 gi|257148159|emb|CAR87132.1| Two-component response regulator, LuxR family [Lactobacillus
           rhamnosus GG]
          Length = 202

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   +   LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A
Sbjct: 132 NMVTAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEA 191

Query: 237 IAYAVRNN 244
           I  A RN 
Sbjct: 192 IEMAKRNK 199


>gi|297193492|ref|ZP_06910890.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718233|gb|EDY62141.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 8/162 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +      R   L    F              + +         +  G+  +   
Sbjct: 62  GIEATRRIVASGARTRVLIVTTFDLDEYAYKGLRAGASGFLIKDAMPEELLSGIRAVAAG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSD 204
             ++         LL  Y  ++ +S      +         LT RE E LT I +G T+ 
Sbjct: 122 DAVVAPSLTRR--LLDTYVQHLPESTAAGTVEPVPDERLARLTEREREILTVIGQGWTNT 179

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA    ++ +TV  +++ I+ KT  + R  A+  A    +V
Sbjct: 180 EIASRFHLAESTVKTHVSRILAKTGARDRVQAVILAYDTRLV 221


>gi|111220151|ref|YP_710945.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111147683|emb|CAJ59339.1| Putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 213

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 15/221 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++  D      + +  L       + VG +       D+ +  + D +V  D    +
Sbjct: 1   MIRVVIADDQPLVRLGLRVLIETEDDLDLVGEAEDGRAAVDIVRATRPD-VVLLDIRMPV 59

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V  +A          L     +    F              + +     + A +   + +
Sbjct: 60  VDGLAALRTIVADPRLAATRIVIVTTFEVDEYVFEALRAGASGFVLKDTEPADLLRAIRV 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDE 205
           +     ++          +     + F         D   LT RE E ++ +  G ++DE
Sbjct: 120 VAAGESLLSPT-------VTRLVIDTFARRPAVTAPDLSGLTVREREVMSLVGRGMSNDE 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS  T   +++ +M K A + R+     A +  +V
Sbjct: 173 IAARLVISPATARTHVSRVMVKLAARDRAQLAVLANQAGLV 213


>gi|37524335|ref|NP_927679.1| hypothetical protein plu0320 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783758|emb|CAE12615.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 242

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--------LLAAYQANMFKSYDVH 179
               +          G+  +  K   I  + +++           +  Y  +  K     
Sbjct: 116 RSGITFGLPAFSGTYGIFSVAGKDGPIDNETMYKCSGEILGVYIRIIRYLTSHTKYLQSF 175

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  +   + RE+E L + ++G TS EI+  + ++++TV+ ++ +I++K   K +  AIA 
Sbjct: 176 YIDETSFSNRELEVLRYTADGMTSIEISSTICVTKSTVDFHLMNIVKKLDCKNKFQAIAK 235

Query: 240 AVRNNIV 246
           A     +
Sbjct: 236 AALLGYI 242


>gi|328463247|gb|EGF34958.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 201

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   +   LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A
Sbjct: 132 NMVTAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEA 191

Query: 237 IAYAVRNN 244
           I  A RN 
Sbjct: 192 IEMAKRNK 199


>gi|325830372|ref|ZP_08163829.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
 gi|325487839|gb|EGC90277.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
          Length = 213

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE   +  ++EG  + EIA  L +S  TV N+I++I++K   K R+  +    R
Sbjct: 155 LTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211


>gi|323130577|gb|ADX18007.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 238

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   
Sbjct: 162 RERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNV 221

Query: 231 KTRSGAIA 238
           ++R  A  
Sbjct: 222 RSRVAATI 229


>gi|322374953|ref|ZP_08049467.1| DNA-binding response regulator [Streptococcus sp. C300]
 gi|321280453|gb|EFX57492.1| DNA-binding response regulator [Streptococcus sp. C300]
          Length = 199

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|302545087|ref|ZP_07297429.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462705|gb|EFL25798.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 273

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 18/229 (7%)

Query: 13  NREDEQRTSFVSHLPT-RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
            R    RT+      T  S+L   +        +  R+  L    G          + QE
Sbjct: 54  RRTQPVRTAAGEQGVTFHSELSIVIGVATRRTPFQRRLRRLFGEAGWR-------PVLQE 106

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
                        D+ R   + ++     V      L           I     +D  + 
Sbjct: 107 DGGAVPECDVLVIDIDRLRDIRDRVPTLAVTSETVALDLVPGTVDVRAIVDRDDLDGSFL 166

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +   ++A     +     +  ++      +     A  A  + +          LT RE 
Sbjct: 167 NAVHEIASGHGWISPTLVRS-LLRPPSPADSPAHRAVAATPYPA---------RLTARER 216

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           E +  ++ G  + EIA  L ++ +TV  ++++I+ KT  + RS   A+A
Sbjct: 217 EVVALVTSGLNNGEIAATLHVAESTVKFHVSNILHKTGCRDRSQLTAHA 265


>gi|302533753|ref|ZP_07286095.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442648|gb|EFL14464.1| two-component system response regulator [Streptomyces sp. C]
          Length = 221

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 12/177 (6%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDNR 129
           +V S  P  ++  + + + D      Q    +  P        F              + 
Sbjct: 46  LVRSLTPDVVLMDVRMPQIDGLGATGQILRSMPDPPRIVVVTTFENDSYVYDALRAGASG 105

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +     D   +   + L+     +     L+   + A   A+   +          LT R
Sbjct: 106 FLLKRADPDELIGAVRLVARGDSL-----LFPAAVRALAAAHTAAAEPPAPAWAARLTDR 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  ++ G ++ E++  LG+   TV  ++A+++ KT ++ R+ A+  A     +
Sbjct: 161 EADVLRLMATGLSNQEMSEHLGVGPQTVKTHVAAVLAKTGSRDRTQAVIAAYEGGFI 217


>gi|258539446|ref|YP_003173945.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus Lc 705]
 gi|257151122|emb|CAR90094.1| Two-component response regulator, LuxR family [Lactobacillus
           rhamnosus Lc 705]
          Length = 202

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   +   LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A
Sbjct: 132 NMVTAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEA 191

Query: 237 IAYAVRNN 244
           I  A RN 
Sbjct: 192 IEMAKRNK 199


>gi|89056006|ref|YP_511457.1| two component LuxR family transcriptional regulator [Jannaschia sp.
           CCS1]
 gi|88865555|gb|ABD56432.1| two component transcriptional regulator, LuxR family [Jannaschia
           sp. CCS1]
          Length = 214

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 51/139 (36%), Gaps = 5/139 (3%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   +F      I         Y     D++ I   +  +   G  I       +  +  
Sbjct: 81  LVISIFGDEARVIEAIRAGAKGYVLKGGDLSHIGEDIQSVLAGGSPISPSIARHLLAVLN 140

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              +     D        LT RE E L  +S G    EIA  LGIS  TV N+I SI RK
Sbjct: 141 DPRDAPAMQDAPA-----LTNRETEILRSVSRGYKRHEIAAQLGISAGTVGNHITSIYRK 195

Query: 228 TATKTRSGAIAYAVRNNIV 246
               +   A+A A R+ ++
Sbjct: 196 LEVSSNIEAVAIASRSGML 214


>gi|119717828|ref|YP_924793.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119538489|gb|ABL83106.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 229

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I    G    Y + T     +   +  +  +G  +   RL    L 
Sbjct: 93  RYLALSVSDAAEDVIGTIRGGARGYVTKTITGPELVQAIGRVA-EGDAVFSPRLAGFVLD 151

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A   +    + D    +   LT RE E +  I+ G    E+A  L IS  TV  +++S++
Sbjct: 152 AFSGSIDVAAVDEDLDR---LTEREREVMRLIARGYAYKEVAKELFISIKTVETHMSSVL 208

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    +R     +A    ++
Sbjct: 209 RKLQLSSRHELTRWASDRRLL 229


>gi|119717344|ref|YP_924309.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538005|gb|ABL82622.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 212

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++EG  +  IA  L +S +T  +++  I +K     R+ A+  A+R  +
Sbjct: 145 LSDREHDVLLLLAEGLGTAAIAERLFMSESTAKSHLGHIYQKLGAANRAQALVTAMRIGL 204

Query: 246 V 246
           +
Sbjct: 205 L 205


>gi|291451544|ref|ZP_06590934.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354493|gb|EFE81395.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 238

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ REVE +  I+ G ++ +IA    IS  TV N+I  I  K     RS AIA
Sbjct: 172 LSSREVEVMELIASGMSNQQIAATCFISEKTVKNHINRIFAKLHAPNRSAAIA 224


>gi|259649548|dbj|BAI41710.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 203

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   +   LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A
Sbjct: 133 NMVTAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEA 192

Query: 237 IAYAVRNN 244
           I  A RN 
Sbjct: 193 IEMAKRNK 200


>gi|229552033|ref|ZP_04440758.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314610|gb|EEN80583.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 203

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   +   LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A
Sbjct: 133 NMVTAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEA 192

Query: 237 IAYAVRNN 244
           I  A RN 
Sbjct: 193 IEMAKRNK 200


>gi|126731547|ref|ZP_01747353.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
 gi|126708083|gb|EBA07143.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
          Length = 200

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
            +  +        ++   R    G + A    M K  D   G    LT RE+E L  I +
Sbjct: 97  AQGFIPKTLSARSLLTAARFMAAGEIYAPIEFMQKDPDDAGGM---LTRRELEVLRGICD 153

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           GK + EIA  L +   TV  ++ ++ RK   + R+ A   A    +
Sbjct: 154 GKANKEIARDLDLQEVTVKLHVKTLSRKLEARNRTHAAMIARDRGL 199


>gi|330954288|gb|EGH54548.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae Cit 7]
          Length = 190

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT R+ + L  ++ GKT+ EIA  LGIS  TV  +++S+++     TR+ A A
Sbjct: 129 PLTARQKQVLGLVAAGKTNKEIAKDLGISPFTVRIHVSSLLKVLGVSTRAAAAA 182


>gi|297154431|gb|ADI04143.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 213

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE + L  ++EG ++ EI   L +S  T+  Y++ ++ K     R  A 
Sbjct: 152 LTERESQVLRLVAEGMSNAEIGRELHMSEKTIKTYVSRVLAKLGCSNRVQAA 203


>gi|288800041|ref|ZP_06405500.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288333289|gb|EFC71768.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 200

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L+ + +G  + EIA IL IS  TV  +  +I+ K   K+ S    YAV +  
Sbjct: 135 LTDREIEVLSLLVQGHINKEIATILHISLTTVITHRKNIVEKLGMKSVSALTIYAVTHGY 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|254381144|ref|ZP_04996509.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340054|gb|EDX21020.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 219

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 9/177 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGM---DNR 129
            +     P  +V  + +   D       +  R       V  T  ++      +    + 
Sbjct: 42  RLTEELAPDVVVMDLRMPGMDGIEATRLITTRTGSARVVVLTTFDDDDYVYGALHAGASG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +      +  I   + ++     +I         L+  + A    +      +   +T R
Sbjct: 102 FLVKDMALEDILSAIRIVAAGDALIAPAVTRR--LIKEFTAR-PAASPPRRAELGAITAR 158

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E LT +  G ++ EIA  L IS  T   Y+  ++ K   + R   +  A    +V
Sbjct: 159 EREVLTLVGRGLSNTEIAGELCISIATAKTYLTRLLAKLDARDRVQLVILAYEAGLV 215


>gi|24374266|ref|NP_718309.1| LuxR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24348793|gb|AAN55753.1|AE015711_10 transcriptional regulator, LuxR family [Shewanella oneidensis MR-1]
          Length = 211

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 15/176 (8%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            D  ++ +   +V      DL +           +   R   +  P        +  P  
Sbjct: 41  CDQIKDNQASMVVIDLSTVDLQKAYQFQRLLARQHPSVRVVYIQFPKLVDARFLMQAPTT 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         I +GL  +    R+I       I L+         + D    +D E
Sbjct: 101 AGVFYLDAGLT--EISLGLSNILRGHRVIP------IQLVNGV------NDDFGLYEDTE 146

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 147 PLTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|269125895|ref|YP_003299265.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310853|gb|ACY97227.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 218

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L                L   +  +  G  ++ P     L  R+            
Sbjct: 94  VFEALRAGARGYLLKRVDGLELVRRLEEVAQGETVVDPT----LAGRMAASAA------- 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                +   G    LT RE E L+ +  G ++  +A  L +S  T+ +++ ++ RK    
Sbjct: 143 RLNRGEFWPGAHRGLTQRESEVLSLLVAGLSNKAMAARLVVSEETIKSHLRALYRKLEVT 202

Query: 232 TRSGAIAYAVRNNI 245
            RSGAIA A+R  +
Sbjct: 203 DRSGAIAVALREGL 216


>gi|330964297|gb|EGH64557.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 220

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 1/139 (0%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +     HT P+ +        R   L    A      +         L   +    +L  
Sbjct: 79  VLILSMHTEPDMVARALDAGARGYLLKDTTATELEQALEALRNDERYLSPAIAHT-VLER 137

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                         + + LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++
Sbjct: 138 AVHGTRAERARAARERYNLTARQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKR 197

Query: 228 TATKTRSGAIAYAVRNNIV 246
                 +G + + VR  I+
Sbjct: 198 LQIFDVAGLVLFCVRERII 216


>gi|255532626|ref|YP_003092998.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345610|gb|ACU04936.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 224

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     D   +   L  +   G  I       + +L+        S         
Sbjct: 105 AGASGYLLKNVDAEEMLFALKYISRGGSYICAA--LSMSMLSK-VLKRINSTVAVAETAI 161

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + + RE+E L  I+EG T+ E+A  L IS+ TV  +  S+  KT  +  +  I YA+ ++
Sbjct: 162 DFSSREIEILELIAEGLTNQEMADRLFISKRTVEGHRQSLTDKTGCRNTAALIRYAMVHD 221

Query: 245 IV 246
           I+
Sbjct: 222 IL 223


>gi|254381597|ref|ZP_04996961.1| luxR family two-component response regulator [Streptomyces sp. Mg1]
 gi|194340506|gb|EDX21472.1| luxR family two-component response regulator [Streptomyces sp. Mg1]
          Length = 235

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 9/158 (5%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR            +  R  EL C +  +  +       +          V +   G  L
Sbjct: 67  VRLQDGDGVSVCRELRSRMPELACLMLTSFDDEEALLDAVMAGASGY---VLKQITGTDL 123

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKT 202
           +     +     + + G      A M    DV   +        T RE E L  +SEG T
Sbjct: 124 VTAVRTVAAGQSMLDPGATTRLMARM--RGDVPKEEQVSGLPGFTDREKEILLMVSEGLT 181

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + EI   L ++  TV N I+ +  K   + R  A   A
Sbjct: 182 NREIGKRLHLAEKTVKNIISRLFVKLGVERRVQAAVIA 219


>gi|126653126|ref|ZP_01725255.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905]
 gi|126590131|gb|EAZ84256.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905]
          Length = 243

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            + +     +D+R+ ++        IG +    +     +D L  + L    +       
Sbjct: 121 EDEMALYLKVDDRHVAV--------IGFLRKIGEKLFNEKDVLMLVYLKRNIENMYALHL 172

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                  FE+T RE E L ++S+G  + EIA  L +S NT+  ++ ++ RK     R+  
Sbjct: 173 HSQPSILFEMTAREREVLNFVSKGLKNVEIAQQLIVSENTIKKHLQNLYRKFQVTNRTQL 232

Query: 237 IAY 239
           +A 
Sbjct: 233 LAK 235


>gi|77460178|ref|YP_349685.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77384181|gb|ABA75694.1| putative LuxR family response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 219

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 2/153 (1%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  +    ++   ++     HT P  I            L    A      +        
Sbjct: 65  EALQRLRRVRPHAKVLILSMHTDPALIMQALESGAHGYLLKDTTATELEHALEALRNNER 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
            L   +    +  A   N+ +  +V    +  LT R++E L  I  GK++ EIA  LG+S
Sbjct: 125 YLSPAIAHTVINQALTRNLKQQPEVAESHN--LTARQLEILRLIVRGKSTREIANGLGLS 182

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  + + IM++      +G + +AVR  I+
Sbjct: 183 IKTVETHRSQIMKRLQIYDVAGLVLFAVREQII 215


>gi|323934698|gb|EGB31088.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
          Length = 200

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|315612509|ref|ZP_07887422.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315315490|gb|EFU63529.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 199

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|293412951|ref|ZP_06655619.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468598|gb|EFF11091.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 200

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|226310338|ref|YP_002770232.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093286|dbj|BAH41728.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 233

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 13/147 (8%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L    F      +         Y     D  RIR  +  ++    ++    L +I + 
Sbjct: 77  KPLILTTFDDDEFVLEAIQAGARGYLLKNNDPNRIRDAIKSVYNNHHVLQDVVLDKIKMN 136

Query: 166 ------AAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGI 212
                 AA   +   S     G   E        T RE++ +  I++G ++ EIA  L I
Sbjct: 137 LNTGRNAADTVSTSPSPKATAGIPTESKIDKSLFTERELDVMKQIAKGLSNKEIAKKLFI 196

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  TV NYI SI+ KTA + R+    Y
Sbjct: 197 SEGTVANYITSILNKTALEHRTQIAIY 223


>gi|89055577|ref|YP_511028.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88865126|gb|ABD56003.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 292

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 5/115 (4%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDF 184
           +R  SL   V ++ + +        +  +          LL     +  +  D    KD 
Sbjct: 166 DRLSSLRAAVEQLDLSVPTAAHVHAVFQKFERGLFAARDLLDDTALDETRPTDHEPHKDI 225

Query: 185 E--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              LT R+ + L  +S G T+ +IA  + IS  TV  +I++I+++T  + R+ A 
Sbjct: 226 SATLTPRQQDILGHVSRGATNRDIARAMDISEGTVKLHISAILKRTGAQNRTEAA 280


>gi|94985808|ref|YP_605172.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94556089|gb|ABF46003.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 221

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +EV  L  I+ G ++ +IA   G++  TV  +++ ++ K   ++R+ A  YA+R+ +
Sbjct: 154 LTPKEVIVLQLIARGYSNRDIARDQGVTEATVKTHVSRLLGKLGLESRTQAALYALRHGL 213


>gi|319789390|ref|YP_004151023.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans
           HB-1]
 gi|317113892|gb|ADU96382.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans
           HB-1]
          Length = 193

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE++ L+ + EGKT+ EIA  LGIS  TV  YI  +++K     R   ++
Sbjct: 129 LSDRELKVLSLLVEGKTNKEIARELGISEQTVKYYINQLLKKANCSNRVNLVS 181


>gi|312195247|ref|YP_004015308.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226583|gb|ADP79438.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 220

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 38/81 (46%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A      F           +LT RE E L  +++G  +  IA  LG+S  TV N+++SI
Sbjct: 136 IAGRVLTAFTDPRPAGVTFPQLTDREREVLVLVADGWPNHRIAHRLGLSAKTVANHVSSI 195

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           + K     R+ AI  A R  +
Sbjct: 196 LAKLHAPDRAAAILQARRAGL 216


>gi|258652113|ref|YP_003201269.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258555338|gb|ACV78280.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 230

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 4/110 (3%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             +   ++ +      +  D L  + G +   Q  +     + +     L+ RE E L  
Sbjct: 124 DSLARAILRVAAGEGEVPPDLLGRLLGQVGRLQRQVLAPRGLAFS---GLSDREAEVLKL 180

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G  + EIA  L  S+ TV N +  +  +   + RS A+AYAVR  ++
Sbjct: 181 VANGHDTAEIAGRLSYSQRTVKNILHDVTTRLQLRNRSHAVAYAVREGLI 230


>gi|163755392|ref|ZP_02162512.1| putative transcriptional regulator [Kordia algicida OT-1]
 gi|161324812|gb|EDP96141.1| putative transcriptional regulator [Kordia algicida OT-1]
          Length = 252

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +LT RE E L + + G T +EIA  + +S +TV  +   +  K      S AIAYA 
Sbjct: 188 EKIKLTSREKEILQYSTRGYTINEIAKTIFVSPDTVKFHRRKLFDKLEVANISEAIAYAT 247

Query: 242 RNNIV 246
            N ++
Sbjct: 248 NNKLI 252


>gi|323189334|gb|EFZ74617.1| transcriptional regulator, LuxR family protein [Escherichia coli
           RN587/1]
          Length = 196

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 138 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 189


>gi|256395415|ref|YP_003116979.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361641|gb|ACU75138.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 217

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E +  ++ G +++E+A  L I   TV  ++  +  K   + R+  ++ A R+ 
Sbjct: 155 ELTSREREVVRMVARGMSTEEVARELIIGEATVRTHVYRVRTKLGVRDRAELVSLAYRSG 214

Query: 245 IV 246
           ++
Sbjct: 215 LI 216


>gi|218506239|ref|ZP_03504117.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli Brasil 5]
          Length = 215

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL   +EG ++ EI+ I+  S  TV  ++ +  +K   + R+ A+  A   
Sbjct: 145 VRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQAVVRATHY 204

Query: 244 NIV 246
            ++
Sbjct: 205 RLL 207


>gi|118593080|ref|ZP_01550467.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
 gi|118434387|gb|EAV41041.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
          Length = 233

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 142 IGLMLLFPKGRIILRDR--LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           IG  L   +   I ++R  L  + L+A     +    D        LT RE+ECL+ I+ 
Sbjct: 134 IGSSLRRAEVERIRQEREPLIRLALVA-----VQNRLDGPEAVRASLTPRELECLSLIAS 188

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           G     IA  LGI   TV  ++ +  +K    TR  A+A A 
Sbjct: 189 GLRVKAIAAELGIQPVTVELHLGNARKKLGAATREHAVALAF 230


>gi|152983891|ref|YP_001349304.1| LuxR family DNA-binding response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150959049|gb|ABR81074.1| DNA-binding response regulator, LuxR family [Pseudomonas aeruginosa
           PA7]
          Length = 210

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKTS 203
           G+ I  + L E  +LA     +   Y+       E       LT R+++ L  +++GK++
Sbjct: 105 GKSIAPEELGE-AILAIRAGEVLVRYEPSGLLPLESSALLDGLTERQLDVLRLLAQGKSN 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI  +L IS  TV  +++S+++     +R+ A   
Sbjct: 164 KEIGRVLDISHYTVRIHVSSLLKALDVPSRTAAAVK 199


>gi|27367915|ref|NP_763442.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
 gi|27359488|gb|AAO08432.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
          Length = 221

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S  +      +LT RE + +T +S G ++ +IA  L +  NTV  ++ +I +K   K R
Sbjct: 144 HSKPISKNVSTKLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNR 203

Query: 234 SGAIAYAVRN 243
             A+ +A  +
Sbjct: 204 VQALIWAKEH 213


>gi|332665795|ref|YP_004448583.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332334609|gb|AEE51710.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 209

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S +     +  LT REV+ L  IS+  ++ +IA  L IS  TV+ +  +IMRK      
Sbjct: 137 HSDEGSNTGEPLLTKREVQILQLISKAMSNKQIASQLFISYQTVSVHRKNIMRKLGVSNT 196

Query: 234 SGAIAYAVRNNIV 246
           +G +  A  + +V
Sbjct: 197 AGLVRAAYDHCLV 209


>gi|13473938|ref|NP_105506.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
 gi|14024689|dbj|BAB51292.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 215

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 10/174 (5%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           +    IV  D+   ++  +  +   +         E+     H     I        R  
Sbjct: 49  EHAAKIVILDYSLPVLNGLEATRIIRRTMPET---EVLIYTMHEDESLIRETLRAGARGY 105

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
            L  +     +  +    +G+     R+ E  L    Q  +    DV       LT RE 
Sbjct: 106 LLKIEDDSELVAAVAALIRGQTYFSPRVSECVL----QDFLDGQSDVTSR---NLTNRER 158

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + ++SEG+++  IA  LG+S  TV+++  + MRK   +     + YA+RN +
Sbjct: 159 EVVRFVSEGESNKRIAARLGVSVKTVDSHRTTAMRKLGLRNAVDLVRYAIRNKL 212


>gi|116626889|ref|YP_829045.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230051|gb|ABJ88760.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 215

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +          ++    L   +  ++ GL    P    I +D +  +   A   ++
Sbjct: 91  VLRAVKAGARGYVLKNSAGDELIQAIHAVQRGLAFFSPAVARIFQDGVARLQD-AREVSD 149

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F+S          LTGRE +    ++EG ++ EIA  L +S +TV  +   IM K    
Sbjct: 150 RFES----------LTGRERQVYQLLAEGNSNKEIANRLNLSLHTVETHRWHIMEKLDLH 199

Query: 232 TRSGAIAYAVRNNIV 246
           + +  +  AVR  +V
Sbjct: 200 STAELVLSAVRRGLV 214


>gi|152966610|ref|YP_001362394.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151361127|gb|ABS04130.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 215

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 4/159 (2%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLM 145
            +   E  +     +   ++   V  T   +      +    + + S       +  G++
Sbjct: 55  GIDGVEATRRIRATRSSAQVRICVLTTFDNDENVLRALKAGADGFLSKGAGPTELTAGIL 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +   G  +    L  + +    + N              LT RE E +  I  G  + +
Sbjct: 115 DIAGGGSALSPTALSAV-VTHVAEDNSVPDDPQALKLFAALTAREREVVEAIVTGLDNQQ 173

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA  + +S  TV  +    M K   + R+  ++ AVR  
Sbjct: 174 IAEAMFVSPFTVKTHANRAMSKVGARDRAQLVSMAVRAG 212


>gi|307135373|gb|ADN33401.1| HanR [Halomonas anticariensis]
          Length = 252

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 35/61 (57%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE + L + ++G TS EI+  L ++++T++ +I + + K   K +  A++ A
Sbjct: 187 ANPVFLSVREADILRYSADGLTSSEISKKLYVTKSTIDFHIKNAIDKLGCKNKVQAVSKA 246

Query: 241 V 241
           +
Sbjct: 247 L 247


>gi|297159387|gb|ADI09099.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 224

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 5/163 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA---GMDNRYCSLTFDVARIRIG 143
           +R   L        + +   +    +  T  E+        G    +     D   +  G
Sbjct: 60  IRMPRLDGLSACEEIRRTLPDTAVAMLTTFSEDAYIARALGGGATGFLLKAGDPHELIAG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +         ++                +   LT RE E L  +  G ++
Sbjct: 120 VRAVAGGAAFLSPK--VARHVITELGGERLTRGAAARARTDVLTAREREVLALVGAGLSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV  Y+++++ +     R  A   A    +V
Sbjct: 178 AEIARRLHLVEGTVKGYVSAVLDRLEVGNRVQAAIVAYEAGLV 220


>gi|148240680|ref|YP_001226067.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849219|emb|CAK24770.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 230

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 38/60 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GR++E L  ++EG ++  IA  L IS NTV ++++ IM +     R+ A++ A+R  +
Sbjct: 169 LSGRQLEILALVAEGLSNRVIAQQLQISSNTVRDHLSEIMLRLDVNNRASAVSSALRRGL 228


>gi|34541106|ref|NP_905585.1| LuxR family DNA-binding response regulator [Porphyromonas
           gingivalis W83]
 gi|34397422|gb|AAQ66484.1| DNA-binding response regulator, LuxR family [Porphyromonas
           gingivalis W83]
          Length = 227

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E + ++ +G ++ E A  + +S  TV  + ++I+ K      +  I YAV++ 
Sbjct: 163 ELTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFTNAAELIRYAVKSG 222

Query: 245 IV 246
           +V
Sbjct: 223 LV 224


>gi|320534244|ref|ZP_08034759.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133549|gb|EFW25982.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 232

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 67/199 (33%), Gaps = 18/199 (9%)

Query: 53  TEYVGASH----FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TE 107
            + V A+H     + +R            V    P   V  +   + D Y     R    
Sbjct: 43  LDMVEATHPDIVLMDIRMPTLDGISATHAVLGSHPDLKVLILTTFDLDDYLVAAMRAGAS 102

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
            F     T PE +     +      +     R              +L+      G    
Sbjct: 103 GFLLKDATAPELLAGIRAVARGDSVVAPSTTR-------------RLLKQWFAPSGPTGP 149

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              ++ ++  VH      L+ RE E +T +    ++ EIA  L ++ +T+ +++  I+ K
Sbjct: 150 GGLSVRRADAVHTESIDALSDREKEIVTLVGRAMSNTEIAQHLVLAESTIKSHLNRILHK 209

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+  I  A  + +V
Sbjct: 210 LELRDRAQLIVLAYESGLV 228


>gi|291008395|ref|ZP_06566368.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 340

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 67/179 (37%), Gaps = 26/179 (14%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKG 151
           S      +  +R  E F P+     + + P     D  Y      +    +   +     
Sbjct: 151 STSRAATDDRRRTVEQFRPLLAGTSDLLQPYRVLADEVYGDAHVALIGAGLEQRIPGRDV 210

Query: 152 RIILRDR--LWEIGLLA----------AYQANMFKSYDV-------------HWGKDFEL 186
             ILR    LW + L +            +A  F   D+                  ++L
Sbjct: 211 GPILRSEGPLWPLLLTSVPHRDGRYIWIDEAGTFHRIDLTRCAGATVLVAERETPAPYDL 270

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE++ +T ++ G ++ EIA  L +SR TV+ ++  I+ K A  +R+   A A R  +
Sbjct: 271 TVRELQIVTLLAVGASNPEIADALVVSRRTVSTHVEHILAKLAVASRAEVAALAAREGL 329


>gi|289570644|ref|ZP_06450871.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289544398|gb|EFD48046.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
          Length = 285

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 218 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 276


>gi|1934734|emb|CAA73019.1| FlcA [Azospirillum brasilense]
          Length = 215

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 5/140 (3%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGM----DNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
             +Q        V  +  E ++   G        Y   +  V ++ +G + L   G I +
Sbjct: 67  REVQSLQPGVPVVVISASEALSDIRGALDHGATGYIPKSSSV-KVMMGALNLVFSGGIYV 125

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                     A+  A      D      + LT R+ E L  +  GK++ +IA  LG+S  
Sbjct: 126 PPGALTAATAASDAAPRRGRLDGADRSAYGLTQRQREVLDCLRAGKSNKQIAYELGLSEG 185

Query: 216 TVNNYIASIMRKTATKTRSG 235
           TV  ++ +I +    K R+ 
Sbjct: 186 TVKIHVTAIFKSLGVKNRTQ 205


>gi|13488084|ref|NP_085693.1| two-component regulator [Mesorhizobium loti MAFF303099]
 gi|14027942|dbj|BAB54534.1| two-component regulator [Mesorhizobium loti MAFF303099]
          Length = 812

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 14/156 (8%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITP-PAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           L+   +    L +   +   VF       +  P   +  +     D  RI   L      
Sbjct: 669 LAYIHRRRRDLTKARAILLRVFEDAARLGSIAPLAEEKLFLGELLDNKRISEFLGASSSA 728

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            ++I +  L + G L+              G   EL+ RE + L  + EG  +  IAV+L
Sbjct: 729 RQVIRK--LRDSGHLS-----------PVPGIRSELSRRENKILVIVCEGAANKSIAVML 775

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+S  TV  ++ ++ RK   +TR  AI+ A    IV
Sbjct: 776 GVSEATVKFHLGNVYRKLGCRTRQEAISIARATGIV 811


>gi|284991855|ref|YP_003410409.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065100|gb|ADB76038.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 248

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ +IA  L IS +TV N++A++  K    ++   ++ AVR+ +
Sbjct: 185 LTEREREILDLLARGLSNADIAQQLTISVHTVRNHVANLSAKLGAHSKLEVLSIAVRDGL 244

Query: 246 V 246
           V
Sbjct: 245 V 245


>gi|187779968|ref|ZP_02996441.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC
           15579]
 gi|187773593|gb|EDU37395.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC
           15579]
          Length = 217

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         I  G+        ++  D    I L   Y+  +    D      + L
Sbjct: 100 ASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKEL---NDDDISLKYNL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TGRE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NNI
Sbjct: 157 TGREINIIREIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNI 215


>gi|134099697|ref|YP_001105358.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|291008299|ref|ZP_06566272.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912320|emb|CAM02433.1| large transcriptional regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 946

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 149 PKGRIILRDRLWEIGLL--AAYQANMFKSYDV-------HWGKDFELTGREVECLTWISE 199
           P G   L DR  E+G    AA   ++ +S+           G   EL+ RE +    ++ 
Sbjct: 847 PDGMGELADRYAELGATRDAARCRHLLRSHGTTTPSRRGRRGYGNELSPREQDVARLLAG 906

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           G+T+ EIA  L +SR TV  ++A ++RK    +R+  
Sbjct: 907 GRTNREIAEALFLSRRTVEQHVARVLRKLGAASRTEL 943


>gi|83951937|ref|ZP_00960669.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           nubinhibens ISM]
 gi|83836943|gb|EAP76240.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           nubinhibens ISM]
          Length = 218

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 18/187 (9%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPV--FHTLPENI 120
             L   Q++   VS   P  ++  + +           +L+R       +   H  PE I
Sbjct: 37  ATLSDGQQIIDQVSQLAPDVILLDLNMPGIGGLSTTEIILERRPATRILILSMHDSPEYI 96

Query: 121 TPPAG-MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +         Y         I++ +  +    R           L    Q ++       
Sbjct: 97  SSALSHGAMGYVLKDVPTDEIKLAIDAVMRGERY----------LCTGAQGSLEPQGGA- 145

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G   +LT RE   L  +++G+++ ++A+ L IS  TV  +  +I RK    + +G   Y
Sbjct: 146 -GVREQLTNREQTILLQLAQGRSNKDVALALDISVRTVETHRKNIKRKLGISSTAGLTRY 204

Query: 240 AVRNNIV 246
           A+ + ++
Sbjct: 205 ALEHGVL 211


>gi|327188744|gb|EGE55942.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 207

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M  S          LT RE E +  +++G ++  I + L +   TV +++  I+ K    
Sbjct: 135 MENSLHDAASDKTSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVS 194

Query: 232 TRSGAI 237
            R+ A 
Sbjct: 195 NRTEAA 200


>gi|84684327|ref|ZP_01012229.1| DNA-binding response regulator, LuxR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668080|gb|EAQ14548.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 225

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 37/72 (51%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  +  D    +   LT ++   L  I EGK + +IA  L I+  TV  ++ +IMRK 
Sbjct: 138 EESGPRRGDDAATRIATLTNQQARILQLICEGKLNKQIAYDLSIAETTVKAHVTAIMRKL 197

Query: 229 ATKTRSGAIAYA 240
             ++R+ A+  A
Sbjct: 198 GVQSRTQAVLIA 209


>gi|323491663|ref|ZP_08096841.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323314025|gb|EGA67111.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 225

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G ++ +IA  + IS  TV +++  I +K   K R+ A ++A ++
Sbjct: 161 VDLTIRELQILRCLISGSSNTQIAEDMFISEFTVKSHLQKIFKKLCVKNRAQAASWARQH 220


>gi|323160586|gb|EFZ46527.1| transcriptional regulator, LuxR family [Escherichia coli E128010]
          Length = 196

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI+  L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 138 LSARQREILTMLAAGESNKEISRALNISTGTVKAHLESLYRRLEVKNRTQAA 189


>gi|226365866|ref|YP_002783649.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244356|dbj|BAH54704.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 211

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTS 203
           LL    R    D ++   LL             D        LTGRE E LT + EG  +
Sbjct: 111 LLNAIRRTAAGDTIFTPALLRRLVDRALDTAPSDERSSTSVALTGREREVLTLVGEGLGN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            EIA  L I   TV  ++A++M KT    R     +A
Sbjct: 171 QEIAARLHIGVTTVKTHVANLMEKTGCDNRVRLAVFA 207


>gi|293364262|ref|ZP_06610988.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307702507|ref|ZP_07639461.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|291317108|gb|EFE57535.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623919|gb|EFO02902.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
          Length = 199

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|260904804|ref|ZP_05913126.1| response regulatory protein [Brevibacterium linens BL2]
          Length = 206

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 16/177 (9%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL-QRPTELFCPVFHTLPENITPPAGMDNR 129
           ++    +V  D    L   +   E  K  N    +P  L    F    E +         
Sbjct: 45  DELAPDVVLCDL--RLGEGIDGIEVTKRLNARPSKPAVLILTTFDNDSEIVAALNAGAAG 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     +   I   +         +  +      ++AA                 +LT R
Sbjct: 103 YLLKDINPEDISTAIEKASRGETYLPPE--ISSKVVAAM-----------RNPGPKLTRR 149

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + +  ++ G ++ +IA  L ++  TV +++ ++  K   ++RS AI  A    +V
Sbjct: 150 ERDVVKLLATGASNAQIAQELFVTEATVKSHLVNVFTKLGVESRSRAIRVAEDQGLV 206


>gi|325859996|ref|ZP_08173123.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|325482522|gb|EGC85528.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           CRIS 18C-A]
          Length = 336

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 81/214 (37%), Gaps = 11/214 (5%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
             LD T +    +  L +        +     ++E+ +   V +    +      +    
Sbjct: 123 AALDETDNLARLILRLFDEYAHD---IRNHMKYEEKMVFPYVEAMLKGEASDAYDIETYS 179

Query: 97  KYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           K+++    +  EL   +   LP +       +NR  +  +D+      L L       I 
Sbjct: 180 KHHSQTDLKLRELKSIIIKYLPSDAHH----NNRLTATLYDIYNCEGWLTLHAEVEEEIF 235

Query: 156 RDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
              +  +      +    K  ++       +  L+ RE + +  +++G T+ EIA  L I
Sbjct: 236 IPVIRRLEQKTQQKDVSLKITNMITQSPDSNEVLSDREKDVIVAVAQGMTNKEIADHLCI 295

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S NTV  +  +I RK    + +G   YA+ NN+V
Sbjct: 296 STNTVITHRRNIARKLQIHSPAGLTIYAIVNNLV 329


>gi|218283881|ref|ZP_03489767.1| hypothetical protein EUBIFOR_02363 [Eubacterium biforme DSM 3989]
 gi|218215544|gb|EEC89082.1| hypothetical protein EUBIFOR_02363 [Eubacterium biforme DSM 3989]
          Length = 217

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 47/118 (39%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y      +  +   +  +   G     +   ++    +  AN    +     +DF+L
Sbjct: 98  ASGYLLKGCSLEELSSAIHSVLSGGACFNPNVAGKVAQFFSQMANSNSEFSFEHEEDFDL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +  E + +  I  G ++ EIA  LG S  T+ NY++ I+ K   + R+    + +   
Sbjct: 158 SDTECKIIAQIGHGYSNKEIAQKLGFSEGTIRNYLSVILDKLDLRDRTQLAIWYLSRG 215


>gi|212637151|ref|YP_002313676.1| regulatory protein LuxR [Shewanella piezotolerans WP3]
 gi|212558635|gb|ACJ31089.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3]
          Length = 223

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 152 RIILRDRLWE--------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           R IL D LW            L +      +          +LT RE   +  +S G  +
Sbjct: 114 RKILADELWYDRTLISRVFRQLVSQIETPLQLSTEGSESFQQLTRREKTIIQLVSSGARN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            EIA  L IS +TV  +I+SI RKT  + R   + +A
Sbjct: 174 KEIAEGLCISEHTVKAHISSIFRKTHARNRVELLRWA 210


>gi|150003225|ref|YP_001297969.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|294776005|ref|ZP_06741501.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|149931649|gb|ABR38347.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|294450143|gb|EFG18647.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
          Length = 256

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 3/105 (2%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           IG M + P  +   +    E  +L      MF    V     F LTGRE+E L  I  G 
Sbjct: 154 IGNMSMAPGQKESEQ---VECTVLNLRNGEMFSPGVVIMNPAFGLTGREMEILRLIQRGF 210

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S EIA  L IS +TV+ +  +++RK   +    AI     + ++
Sbjct: 211 LSKEIADKLCISIHTVHIHRQNLLRKLGVQNSLEAIRLGQESGLL 255


>gi|146301956|ref|YP_001196547.1| response regulator receiver protein [Flavobacterium johnsoniae
           UW101]
 gi|146156374|gb|ABQ07228.1| response regulator receiver protein [Flavobacterium johnsoniae
           UW101]
          Length = 251

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 22/242 (9%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLF---QEQ 72
           +  + L T + L                +  L++      ++         ++F   Q Q
Sbjct: 16  NNSADLKTITQLKICQKTAQNFAELENGIAVLSDLYHNKSYVYSGKIADELNIFKKNQMQ 75

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--NITPPAGMDNR- 129
           +L+SI   +  FD +    +    KY   LQ    +     H   +   I+     DN  
Sbjct: 76  ELESIWEEEL-FDKLNNEDV--LQKYLLELQFFQFIKTVPIHERRDFCVISRLRFKDNTT 132

Query: 130 -----YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +    F      I L L         +   +E  ++     N+ +  +   G   
Sbjct: 133 NKSLLHKMFYFSNEHEDIELALCL-YNFDFSQAFHYEGKIINTANGNVMQQNEA--GNFS 189

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  + +GK S EIA +L IS+NTV+ +  +I+ K      + A   AV+  
Sbjct: 190 FLSSREKEILKMLQKGKQSKEIASLLFISKNTVSRHRQNILEKMKVNNTAEACTLAVKLK 249

Query: 245 IV 246
            +
Sbjct: 250 WI 251


>gi|332666745|ref|YP_004449533.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335559|gb|AEE52660.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 217

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 9/192 (4%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
            H+ +V     +E+ L S+   + P  +V   + SE  +   + +   +   P    L  
Sbjct: 27  DHYQVVAEVGNEEELLASLKI-NKPDLVVIDYSQSESFRPSTIAK--IKTVSPQTQVLV- 82

Query: 119 NITPPAGMDNRYCSLTFDVARIRI----GLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
            I+     +N +  L   V            +L      +  D+ +   ++       F 
Sbjct: 83  -ISADTRKENIFQVLEMGVTSFLTKTCGTNEILDAAHATLKGDKFFCTRVIDCLLEKSFS 141

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ RE+E +   + G  + EIA  L +S +TV  +  +IM+K    + S
Sbjct: 142 KDTQVNCAPTPLSSREIEIVQLSARGLIAKEIADTLNLSTHTVYTHRKNIMKKLQINSSS 201

Query: 235 GAIAYAVRNNIV 246
             + YAV   +V
Sbjct: 202 ELVLYAVSKGLV 213


>gi|329940650|ref|ZP_08289931.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329300711|gb|EGG44608.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 287

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           L  R+ +  L A       +       G D  L+ REV+ L W++ G T+  +A  LG+ 
Sbjct: 194 LAPRIADPALRAELLTVCGRLAGTDTGGADVGLSPREVDVLAWVAVGATNAGVAERLGVR 253

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             TV  Y+ S MRK   +TR  A+  A +  
Sbjct: 254 PETVKAYLRSAMRKLGARTRGEAVVAARQAG 284


>gi|325499075|gb|EGC96934.1| HTH-type transcriptional regulator YhjB [Escherichia fergusonii
           ECD227]
          Length = 196

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 138 LSVRQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLDVKNRTQAA 189


>gi|256851763|ref|ZP_05557151.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260661520|ref|ZP_05862432.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|282933593|ref|ZP_06338963.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           208-1]
 gi|297205385|ref|ZP_06922781.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615721|gb|EEU20910.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260547577|gb|EEX23555.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|281302336|gb|EFA94568.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           208-1]
 gi|297149963|gb|EFH30260.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 223

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 76/191 (39%), Gaps = 7/191 (3%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLP 117
           F +       E+ LD+I   + P  ++  + + + D       V  +  E+   +  T  
Sbjct: 27  FKVTATVADGEEVLDAI-KKERPDVILMDVRMPKMDGTVCTKYVKSKYPEIKVIILTTFD 85

Query: 118 ENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           ++    + +    + Y        ++   +  ++  G +I  +   ++  L +  A    
Sbjct: 86  DDDFIFSALKYGASGYLLKGVSNDQLYQAIETVYQGGAMINPNIAEKVFKLFSKMAQSNY 145

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +  V   +    +  E   +  +  G ++ EI+  L +S  TV NYI+SI+ +   + R+
Sbjct: 146 AIQVDQTESKHFSKNEWRVIQQVGLGLSNKEISAKLYLSEGTVRNYISSILSQLDLRDRT 205

Query: 235 GAIAYAVRNNI 245
               +AV+  +
Sbjct: 206 QLAIWAVQTGV 216


>gi|215488797|ref|YP_002331228.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218691804|ref|YP_002400016.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli ED1a]
 gi|312968158|ref|ZP_07782368.1| bacterial regulatory s, luxR family protein [Escherichia coli
           2362-75]
 gi|215266869|emb|CAS11310.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218429368|emb|CAR10185.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli ED1a]
 gi|312286983|gb|EFR14893.1| bacterial regulatory s, luxR family protein [Escherichia coli
           2362-75]
          Length = 200

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|153839891|ref|ZP_01992558.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260902461|ref|ZP_05910856.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|149746588|gb|EDM57576.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308109572|gb|EFO47112.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|328471379|gb|EGF42274.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 200

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 138 VDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 197


>gi|332072188|gb|EGI82674.1| response regulator [Streptococcus pneumoniae GA41301]
          Length = 199

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  +++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEISVLKGVAQGLSNQEIADKLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|291085111|ref|ZP_06352103.2| nitrate/nitrite response regulator protein NarL [Citrobacter
           youngae ATCC 29220]
 gi|291072010|gb|EFE10119.1| nitrate/nitrite response regulator protein NarL [Citrobacter
           youngae ATCC 29220]
          Length = 225

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 75/197 (38%), Gaps = 20/197 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCM-----ALSEKDKYYNVLQRPTELFCPVFHTL 116
           L+V       + +  ++  D  F++V        A+   ++    +         +    
Sbjct: 20  LIVDDHPLMRRGISQLLQLDPAFNVVAEAGDGASAIDLANRLDLDVILLDLNMKGMSGLD 79

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA---------- 166
             N     G+  +   LT   A   +  ++       +L+D   E+ L A          
Sbjct: 80  TLNALRRDGVTAQIIILTVSDAASDVYALIDAGADGYLLKDSDPEVLLEAIRSGAKGGKA 139

Query: 167 --AYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
                +   +  D+   ++     LT RE++ L  +++G ++ +IA +L IS  TV  +I
Sbjct: 140 FSTRVSEYLRERDLFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHI 199

Query: 222 ASIMRKTATKTRSGAIA 238
            +++RK   ++R  A  
Sbjct: 200 RNLLRKLNVRSRVAATI 216


>gi|284043113|ref|YP_003393453.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283947334|gb|ADB50078.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 227

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 1/150 (0%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
           +          L   V     + I         Y + T     +   +  +   G  +  
Sbjct: 73  RAAPGRPGVRFLALSVSDAPDDVIAVIRAGARGYVTKTISADELVDAIERVA-DGDAVFS 131

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            RL    L A        +      +  +LT RE E L  I+ G    E+A+ LGIS  T
Sbjct: 132 PRLAGFVLDAFAGGAPAPAVATADAELDQLTQREREVLRHIARGYLYKEVALRLGISAKT 191

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++++++RK     R     +AV   ++
Sbjct: 192 VEAHVSAVLRKLQLSNRHELSRWAVERRLL 221


>gi|114561805|ref|YP_749318.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114333098|gb|ABI70480.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 209

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 16/137 (11%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           N     G+  R   LT   A+  +  +L       +L+D   ++ L    +A +      
Sbjct: 70  NAMRQEGVTARIVILTVSDAKQDVVRLLRAGADGYLLKDTEPDLLLEQLKKAMLGHRVIS 129

Query: 179 HWGKDF---------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              + +                LT RE++ L  ++EGK++  IA  L IS  TV  ++ +
Sbjct: 130 DEVEAYLYELKNTIDDNSWIENLTPRELQILQELAEGKSNRMIAEDLHISEGTVKVHVKN 189

Query: 224 IMRKTATKTRSG-AIAY 239
           ++RK   K+R+  A+ Y
Sbjct: 190 LLRKANAKSRTEMAVRY 206


>gi|86140782|ref|ZP_01059341.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis
           MED217]
 gi|85832724|gb|EAQ51173.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis
           MED217]
          Length = 211

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 29/201 (14%)

Query: 74  LDSIVSSDWPFDLVRCMALSEK-------DKYYNVLQ-----RP----TELFCPVFHTLP 117
            D  + S+    LVR  +  E         ++ N ++     RP     ++  PV   + 
Sbjct: 8   DDHTLLSEAIAGLVRQFSNFEVVNVAQNGQEFINFVEANPDNRPDIVLMDVKMPVMGGIE 67

Query: 118 ENITPP-AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--------RLWEIGLLAAY 168
                     + +  +L+ +     +  M+       +L+D         L E+     Y
Sbjct: 68  ATTFLQKHYPEIKVLALSIEEEEGVVLQMIRAGAKGYLLKDTRKNILELALNEVMTQGFY 127

Query: 169 QANMFKSY----DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             N  +      +    ++  L  RE+E +       T  +IA  + +S  TV  Y  ++
Sbjct: 128 YTNTVERIVNKTESKTEEEIVLKEREIEFIKHACTEMTYKQIAEKMFLSPKTVEGYREAV 187

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
            +K   K R+G + YA++NNI
Sbjct: 188 FQKLGLKNRTGLVIYAIKNNI 208


>gi|269956425|ref|YP_003326214.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305106|gb|ACZ30656.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 241

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 7/164 (4%)

Query: 87  VRCMALSEKDKYYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           VR   L   +    +L R       +    F              + Y         +  
Sbjct: 73  VRMPHLDGIEATRRILARAGTAVRVIVLTTFDLDEYVYGAIRAGASGYLLKDVSPRGLVT 132

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     ++    L    +L  Y A       +       LT RE E    ++ G +
Sbjct: 133 AVRAVADGEAMLSPAVLTR--MLDQYVARPPAGVALPPAI-AALTDREREVARNVARGLS 189

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L +S  TV  Y++ ++ K   + R      A    +V
Sbjct: 190 NAQIAARLFLSEATVKTYVSRLLTKLGLRDRVQIAVLAYETGLV 233


>gi|261251088|ref|ZP_05943662.1| DNA-binding response regulator LuxR family [Vibrio orientalis CIP
           102891]
 gi|260937961|gb|EEX93949.1| DNA-binding response regulator LuxR family [Vibrio orientalis CIP
           102891]
          Length = 209

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 16/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++          D     L   + ++  G   L P+      DRL E          
Sbjct: 90  VVRSVKAGAKGYVLKDVGSEELVMAINQVAQGRSYLCPQ----ASDRLLE---------- 135

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  +    KD  L+ RE + L  I+ G  + EIA  L IS  TV  +   I +K    
Sbjct: 136 --QINEAPEEKDDTLSKRESDVLKAIANGAGNKEIADSLHISVRTVETHRLRIKKKLGAT 193

Query: 232 TRSGAIAYAVRNNIV 246
           + +  +  A++  +V
Sbjct: 194 STAALVKLALQKGLV 208


>gi|198245542|ref|YP_002217566.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207858844|ref|YP_002245495.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197940058|gb|ACH77391.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206710647|emb|CAR35005.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|326625348|gb|EGE31693.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 200

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +   E+        PE       MD     L   +      ++         +      +
Sbjct: 59  EFCREVLQRTVQQFPEVKIIITAMDGSQKWLHEVMQFNVQAVVPRDSDAETFV------L 112

Query: 163 GLLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNT 216
            L A  +  MF   D     + E      L+ R+ E L  ++ G+++ +I   L IS  T
Sbjct: 113 ALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTGT 172

Query: 217 VNNYIASIMRKTATKTRSGAI 237
           V  ++ S+ R+   K R+ A 
Sbjct: 173 VKAHLESLYRRLDVKNRTQAA 193


>gi|256380091|ref|YP_003103751.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924394|gb|ACU39905.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L   G+ A       +   V   +   L+ +E   L  I+EG T+ +IA  L ++  TV 
Sbjct: 126 LLHAGVTAT-VLQRLRGGPVEDPRYASLSPQERRILDLIAEGLTNRQIAGRLFLAEKTVK 184

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNN 244
           NY++S++ K     R+ A  YA +  
Sbjct: 185 NYVSSLLHKLGFDRRTEAGVYAAKRR 210


>gi|289208492|ref|YP_003460558.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288944123|gb|ADC71822.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp.
           K90mix]
          Length = 204

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 2/129 (1%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
             E I       + YC    +VA++R     +   G  +  D +    ++   ++   + 
Sbjct: 72  DEEGIRAFDAGAHGYCHTLANVAQLRTIAATVTGGGLWVGPDLMTR--MIRTVRSAQPRD 129

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +        LT RE E    ++ G  + EIA  LG++  TV  ++ S+ +K     R  
Sbjct: 130 PETPPEGFENLTPREREVALAVTTGAHNKEIARQLGMTERTVKMHLGSVFKKLNVDDRVQ 189

Query: 236 AIAYAVRNN 244
            + +  R  
Sbjct: 190 LVLHLTRLR 198


>gi|153941243|ref|YP_001390894.1| LuxR family transcriptional regulator [Clostridium botulinum F str.
           Langeland]
 gi|152937139|gb|ABS42637.1| transcriptional regulator, LuxR family [Clostridium botulinum F
           str. Langeland]
          Length = 865

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           +L+   E     F+ L E I     +DNRY           + ++      + I      
Sbjct: 725 ILEELNESKRTTFNLLREAIH--YSVDNRYLKPYVLEGEKLLNIIKELKNDKDIELTSKE 782

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +      +  N+    +    K   LT RE E +  + EG ++ +I   L IS  TV  +
Sbjct: 783 D-----NFIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNISLATVKTH 837

Query: 221 IASIMRKTATKTRSGAI 237
           + +I  K     R  A+
Sbjct: 838 MINIYSKLQVSNRVQAV 854


>gi|157374068|ref|YP_001472668.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157316442|gb|ABV35540.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 209

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           N     G+ +R   LT   A+  +  ++       +L+D   ++ L     A        
Sbjct: 70  NGLRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKLKNAMQGHRVIS 129

Query: 179 HWGKDF---------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              +DF                LT RE++ L  ++EGK++  I+ +L IS  TV  ++ +
Sbjct: 130 ESVEDFLYELKDAAEEEEWLNNLTPRELQILQQVAEGKSNRVISELLHISEGTVKVHVKN 189

Query: 224 IMRKTATKTRSG-AIAY 239
           ++RK   K+R+  A+ Y
Sbjct: 190 LLRKANAKSRTEMAVRY 206


>gi|320532874|ref|ZP_08033645.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134904|gb|EFW27081.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 152

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y +       +   +  +          RL    +L
Sbjct: 15  RFLALSVSDASDDVVGVIRAGARGYVTKAISTEDLAQAVRRVAAGDAAFSP-RLAGF-VL 72

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ A   +        D  L+ RE E +  I+ G T  E A  L IS  TV  ++++++
Sbjct: 73  DAFGAGAGEVAVADTELD-RLSTREREVMRLIARGYTYKECASELFISVKTVETHVSAVL 131

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R+    +AV   IV
Sbjct: 132 RKLQLSNRNELTRWAVARRIV 152


>gi|302542220|ref|ZP_07294562.1| nitrate/nitrite response regulator protein NarL [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459838|gb|EFL22931.1| nitrate/nitrite response regulator protein NarL [Streptomyces
           himastatinicus ATCC 53653]
          Length = 258

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 15/171 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPA--GMDNRYCSLTFD 136
           P  +V  + L  +       +    RP      +  +  ++    A       Y      
Sbjct: 92  PDLVVMDLGLPGRSGLEATRRILCARPGARVMVMTMSEDDDSLLAAVRAGARGYLLKGAG 151

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECL 194
              I   L  +   G +        +G+L  A+  A+  +++         LT RE E L
Sbjct: 152 RDEILRALHTVARGGAVFSPRMAERLGVLLGASGAASAKEAFPT-------LTAREREVL 204

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++ G    +IA  L ++  TV N++ SI  K     R+ AI  A    +
Sbjct: 205 DLLAGGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVHDRAQAIVRAREAGL 255


>gi|254381952|ref|ZP_04997315.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340860|gb|EDX21826.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 228

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 2/109 (1%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L   V  +  G   L P     L   L          A   +    H    F L+ RE
Sbjct: 109 ELLVTAVHDVHAGRPHLSPTAAGTLLSDLRASSHPQRTVAQSSQRLPNHIA--FGLSSRE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            E +  I+ G ++ +IA    IS  TV N+I  I  K  + TRS AIA 
Sbjct: 167 EEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFAKLQSTTRSEAIAR 215


>gi|150391445|ref|YP_001321494.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951307|gb|ABR49835.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 201

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            +   +    F          +     Y   + +V+ +   L +LF    ++  D L  +
Sbjct: 73  PQIRIMMLTTFQDEQNIRLAISAGAEGYLIKSTEVSSMAQQLRVLFSGTSVLDADVLKRL 132

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                                 ELT RE + +  + +G ++ EIA  L IS  TV N ++
Sbjct: 133 M-------------QPQRKGFEELTPRERDIVELVVQGLSNREIAEQLYISEGTVRNTLS 179

Query: 223 SIMRKTATKTRSGAIAY 239
            I+ K   + R+    Y
Sbjct: 180 IILEKLQVRDRTQLAIY 196


>gi|126452622|ref|YP_001066938.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106a]
 gi|242317399|ref|ZP_04816415.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106b]
 gi|126226264|gb|ABN89804.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106a]
 gi|242140638|gb|EES27040.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106b]
          Length = 233

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K    +R     YAV   
Sbjct: 165 QLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERG 224

Query: 245 I 245
           +
Sbjct: 225 L 225


>gi|52222873|gb|AAU34214.1| two component response regulator MppU [Streptomyces hygroscopicus]
          Length = 222

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 33/62 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT REVE    ++EGKT+ +IA  L IS  TV  ++ASI RK   + R G    A  
Sbjct: 153 DSVLTEREVEIAGKVAEGKTNSDIARELFISAGTVKTHVASIQRKLQVRNRVGVAVRAWE 212

Query: 243 NN 244
             
Sbjct: 213 LG 214


>gi|53719924|ref|YP_108910.1| putative response regulator protein [Burkholderia pseudomallei
           K96243]
 gi|53724171|ref|YP_103355.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           23344]
 gi|76809195|ref|YP_334149.1| DNA-binding response regulator NarL [Burkholderia pseudomallei
           1710b]
 gi|121601164|ref|YP_993557.1| DNA-binding response regulator NarL [Burkholderia mallei SAVP1]
 gi|124386217|ref|YP_001029014.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10229]
 gi|126440837|ref|YP_001059655.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 668]
 gi|126449502|ref|YP_001081065.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10247]
 gi|134277548|ref|ZP_01764263.1| DNA-binding response regulator NarL [Burkholderia pseudomallei 305]
 gi|167003441|ref|ZP_02269227.1| DNA-binding response regulator NarL [Burkholderia mallei PRL-20]
 gi|217420735|ref|ZP_03452240.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 576]
 gi|226195464|ref|ZP_03791052.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813049|ref|YP_002897500.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Burkholderia pseudomallei MSHR346]
 gi|238561643|ref|ZP_00441776.2| DNA-binding response regulator NarL [Burkholderia mallei GB8 horse
           4]
 gi|254177953|ref|ZP_04884608.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           10399]
 gi|254184342|ref|ZP_04890932.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1655]
 gi|254191372|ref|ZP_04897876.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195930|ref|ZP_04902356.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei S13]
 gi|254200313|ref|ZP_04906679.1| DNA-binding response regulator NarL [Burkholderia mallei FMH]
 gi|254261045|ref|ZP_04952099.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1710a]
 gi|254357939|ref|ZP_04974212.1| DNA-binding response regulator NarL [Burkholderia mallei
           2002721280]
 gi|52210338|emb|CAH36317.1| putative response regulator protein [Burkholderia pseudomallei
           K96243]
 gi|52427594|gb|AAU48187.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           23344]
 gi|76578648|gb|ABA48123.1| DNA-binding response regulator NarL [Burkholderia pseudomallei
           1710b]
 gi|121229974|gb|ABM52492.1| DNA-binding response regulator NarL [Burkholderia mallei SAVP1]
 gi|124294237|gb|ABN03506.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10229]
 gi|126220330|gb|ABN83836.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 668]
 gi|126242372|gb|ABO05465.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10247]
 gi|134251198|gb|EBA51277.1| DNA-binding response regulator NarL [Burkholderia pseudomallei 305]
 gi|147749909|gb|EDK56983.1| DNA-binding response regulator NarL [Burkholderia mallei FMH]
 gi|148027066|gb|EDK85087.1| DNA-binding response regulator NarL [Burkholderia mallei
           2002721280]
 gi|157939044|gb|EDO94714.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698992|gb|EDP88962.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           10399]
 gi|169652675|gb|EDS85368.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei S13]
 gi|184214873|gb|EDU11916.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1655]
 gi|217396147|gb|EEC36164.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 576]
 gi|225932424|gb|EEH28423.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505451|gb|ACQ97769.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Burkholderia pseudomallei MSHR346]
 gi|238524266|gb|EEP87700.1| DNA-binding response regulator NarL [Burkholderia mallei GB8 horse
           4]
 gi|243061043|gb|EES43229.1| DNA-binding response regulator NarL [Burkholderia mallei PRL-20]
 gi|254219734|gb|EET09118.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1710a]
          Length = 233

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K    +R     YAV   
Sbjct: 165 QLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERG 224

Query: 245 I 245
           +
Sbjct: 225 L 225


>gi|99080717|ref|YP_612871.1| two component LuxR family transcriptional regulator [Ruegeria sp.
           TM1040]
 gi|99036997|gb|ABF63609.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           TM1040]
          Length = 233

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 166 LTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGV 225

Query: 246 V 246
           +
Sbjct: 226 L 226


>gi|330468719|ref|YP_004406462.1| regulatory protein LuxR [Verrucosispora maris AB-18-032]
 gi|328811690|gb|AEB45862.1| regulatory protein, LuxR [Verrucosispora maris AB-18-032]
          Length = 956

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 174 KSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +  D   G +   LT RE E L  ++EG T+ EI   L IS  T+  +++ I  K   +T
Sbjct: 884 REPDGDGGAELAALTAREREVLAAVAEGLTNREIGQRLYISERTIGVHVSHIFDKLQVRT 943

Query: 233 RSGAIAYAVR 242
           R  A A  +R
Sbjct: 944 RVQASAIFLR 953


>gi|294498256|ref|YP_003561956.1| two-component response regulator DesR [Bacillus megaterium QM
           B1551]
 gi|295703606|ref|YP_003596681.1| two-component response regulator DesR [Bacillus megaterium DSM 319]
 gi|294348193|gb|ADE68522.1| two-component response regulator DesR [Bacillus megaterium QM
           B1551]
 gi|294801265|gb|ADF38331.1| two-component response regulator DesR [Bacillus megaterium DSM 319]
          Length = 200

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D++      LT RE E L  +++GK + EIA  L I   TV NYI++I+ K   K R  
Sbjct: 129 DDLYSESTSPLTAREKEVLALVADGKNTKEIADELSIKTGTVRNYISTILDKLEVKNRIE 188

Query: 236 AI 237
           AI
Sbjct: 189 AI 190


>gi|150249482|gb|ABR67760.1| CmnR [Saccharothrix mutabilis subsp. capreolus]
          Length = 237

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            +    D        LT RE + L  I +G+++ EIA    +S  TV ++++ ++ K   
Sbjct: 146 QIIPLPDPSAPALLSLTEREGQVLRAIGQGRSNREIAREFEVSETTVKSHVSRVLAKLEL 205

Query: 231 KTRSGAIAYAVRNNIV 246
           + R  A   A R  +V
Sbjct: 206 RDRVQAALLAWRLGLV 221


>gi|146307562|ref|YP_001188027.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
 gi|145575763|gb|ABP85295.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
          Length = 904

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E +   ++G +++EI   L ++  TV  ++ +I  K   + R+ AI  A  
Sbjct: 839 EEGLTEREREVVCLAAKGLSNEEIGQQLSLALGTVKWHLHNIYEKLKVRNRTQAIRRARE 898

Query: 243 NNIV 246
            +++
Sbjct: 899 LSLL 902


>gi|332991886|gb|AEF01941.1| two-component system regulatory protein [Alteromonas sp. SN2]
          Length = 214

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 35/65 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +   L+ +E+E L  ++ G ++ EI+  +  S  TV N +++IM K   + R+ A+  
Sbjct: 148 FEQPETLSPKEIEILRLVAAGYSNKEISEAMFKSTGTVKNQVSAIMAKMGVRDRTRAVLK 207

Query: 240 AVRNN 244
           A+   
Sbjct: 208 ALELG 212


>gi|331697120|ref|YP_004333359.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951809|gb|AEA25506.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 931

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E  T ++EG+T+ EIA  L +S  TV +++A+++ K     R+    +   + 
Sbjct: 870 LTPREREITTLLAEGRTNREIAGRLVLSERTVESHVANVLGKLGLARRAQVAGWVAEHG 928


>gi|259907792|ref|YP_002648148.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae
           Ep1/96]
 gi|224963414|emb|CAX54902.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae
           Ep1/96]
 gi|283477661|emb|CAY73577.1| Nitrate/nitrite response regulator protein homolog [Erwinia
           pyrifoliae DSM 12163]
 gi|310768295|gb|ADP13245.1| Nitrate/nitrite response regulator protein NarP [Erwinia sp.
           Ejp617]
          Length = 209

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 13/167 (7%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           Q    ++  D     +  +          +  R   L   V     +           Y 
Sbjct: 49  QLHPHLILLDLKMQGMSGLETLNALHASGIASRVVVLT--VSALRRDFTALQEAGAEGYL 106

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               D   +   ++ +   G      RL   G L +++ +              LT RE 
Sbjct: 107 LKDSDPEELLAQIIKVAEGGVAWSH-RLQAPGALESWKCDPLAL----------LTVREQ 155

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           E L  ++ G T+ ++A  L IS  TV  +I +++RK   +TR  A  
Sbjct: 156 EVLKEVASGLTNKQVAENLAISEQTVKVHIRNVLRKLNVRTRVAATV 202


>gi|218550792|ref|YP_002384583.1| HTH-type transcriptional regulator YhjB [Escherichia fergusonii
           ATCC 35469]
 gi|218358333|emb|CAQ90980.1| putative HTH-type transcriptional regulator YhjB [Escherichia
           fergusonii ATCC 35469]
          Length = 227

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 169 LSVRQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLDVKNRTQAA 220


>gi|205353364|ref|YP_002227165.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205273145|emb|CAR38106.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628455|gb|EGE34798.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 207

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   
Sbjct: 131 RERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNV 190

Query: 231 KTRSGAIA 238
           ++R  A  
Sbjct: 191 RSRVAATI 198


>gi|290475594|ref|YP_003468482.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus bovienii SS-2004]
 gi|289174915|emb|CBJ81716.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus bovienii SS-2004]
          Length = 211

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  ISEG T+ EIA  L IS  TV  +  ++++K  +++R  A    +R+ 
Sbjct: 147 KLTKRELDVLKEISEGMTNKEIADFLFISEETVKVHTRNLLKKLKSRSRLEATIIYLRHR 206


>gi|270293402|ref|ZP_06199611.1| DNA-binding response regulator [Streptococcus sp. M143]
 gi|270278251|gb|EFA24099.1| DNA-binding response regulator [Streptococcus sp. M143]
          Length = 199

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|320012130|gb|ADW06980.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 241

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 10/126 (7%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                   + +   L   V  +  G  +L P     L + L       +       +   
Sbjct: 119 GAAGYVLKEVKGTDLVAAVRTVATGQSMLDPATTTRLMESLRVPASTRSEGDERLSA--- 175

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+ RE   L  I EG T+ +I+  L +S  TV N+I+ ++ K   + R  A  
Sbjct: 176 -------LSDREKAVLDLIGEGLTNRQISKRLYLSEKTVKNHISRLLSKLGVERRVQAAV 228

Query: 239 YAVRNN 244
            A + +
Sbjct: 229 IATKAH 234


>gi|302549529|ref|ZP_07301871.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467147|gb|EFL30240.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 221

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +A + +      L+    +    F              + +     
Sbjct: 49  DVVLMDIRMPSLDGLAATRRVTEDPSLKDVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+  + A   +           LT RE E + 
Sbjct: 109 EPDELLRAVRAVVAGDALLSPGVTRR--LIGEFAARSKEP--AAADALASLTEREREVMA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G ++ EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 165 LVGIGLSNGEIARRLVVSPLTAKTHVSRTMVKLNARDRAQLVVLAYESGLV 215


>gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regulator protein [Herminiimonas
           arsenicoxydans]
 gi|133738764|emb|CAL61811.1| nitrate/nitrite response regulator protein [Herminiimonas
           arsenicoxydans]
          Length = 235

 Score = 81.2 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L A   N  +  +V    D +LT RE + L  ++ G+++  IA  L ++ +TV  ++ +I
Sbjct: 149 LIAQLQNAGQRTEVRSELD-KLTPRERDILACLARGESNKLIARTLDVADSTVKIHVQNI 207

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           ++K    +R  A  +AV + +
Sbjct: 208 LKKLNLSSRVQAAIFAVGHGV 228


>gi|300782900|ref|YP_003763191.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792414|gb|ADJ42789.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 218

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E ++ ++ G +++EIA  + IS  T   ++   M K   + R+  + +A  + 
Sbjct: 152 ELTNREREAVSLVARGLSNEEIAGRMVISPLTAKTHVNRAMMKLHARDRAQLVVFAYESG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|284030413|ref|YP_003380344.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283809706|gb|ADB31545.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 208

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D  LT RE E L  I  G T+ E+A IL +S  TV NY++ I+ KT  ++R  AI  
Sbjct: 142 RAGDNPLTERECEVLRLIGTGATAQEVAQILCLSPGTVRNYLSRILSKTGARSRIEAIRK 201

Query: 240 AVRNNIV 246
           A     +
Sbjct: 202 AQDAGWI 208


>gi|261253170|ref|ZP_05945743.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
 gi|260936561|gb|EEX92550.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
          Length = 212

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE   L  ++EG +S +IA +L IS  TV  +  +I  K    + +    YAV
Sbjct: 147 KPNPLSRREEAVLKLVAEGNSSKKIASLLDISYRTVETHRQNIKHKLDLHSTAELAKYAV 206

Query: 242 RNNIV 246
              IV
Sbjct: 207 EQGIV 211


>gi|290962906|ref|YP_003494088.1| response regulator [Streptomyces scabiei 87.22]
 gi|260652432|emb|CBG75565.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 219

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E  L+  Y         +    +  +T RE E L  ++EG +S EIA +L IS  TV  +
Sbjct: 135 ETTLIRTYLDRARAGDRL---PERPITEREEEILKLVAEGHSSREIARLLVISVKTVERH 191

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
            A+++ K   + R     YA+R  +
Sbjct: 192 RANLLHKLGLRDRLDLTRYAIRTGL 216


>gi|239625806|ref|ZP_04668837.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520036|gb|EEQ59902.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 252

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKD----FELTGREVECLTWISEGKTSDEIAVILGIS 213
              E  +    Q    +  D H  K+    FELT RE E L  +S G ++ EI   L IS
Sbjct: 163 AHIENIVFNGLQMGQKQVMDEHCFKNMKSRFELTEREEEILKLLSHGASTQEICEKLVIS 222

Query: 214 RNTVNNYIASIMRKTATKTRSGA 236
            +TV  +  +I  KT  K+R+  
Sbjct: 223 TSTVKKHTYNIYNKTGVKSRTQL 245


>gi|193061833|ref|ZP_03042930.1| transcriptional regulator, LuxR family [Escherichia coli E22]
 gi|194428712|ref|ZP_03061249.1| transcriptional regulator, LuxR family [Escherichia coli B171]
 gi|209920980|ref|YP_002295064.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|256020867|ref|ZP_05434732.1| putative transcriptional regulator [Shigella sp. D9]
 gi|260846309|ref|YP_003224087.1| putative DNA-binding response regulator in two-component regulatory
           system [Escherichia coli O103:H2 str. 12009]
 gi|307314352|ref|ZP_07593959.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|331670350|ref|ZP_08371189.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA271]
 gi|332282081|ref|ZP_08394494.1| transcriptional regulator [Shigella sp. D9]
 gi|192932623|gb|EDV85220.1| transcriptional regulator, LuxR family [Escherichia coli E22]
 gi|194413295|gb|EDX29580.1| transcriptional regulator, LuxR family [Escherichia coli B171]
 gi|209914239|dbj|BAG79313.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|257761456|dbj|BAI32953.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli O103:H2 str. 12009]
 gi|306906067|gb|EFN36587.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|315062799|gb|ADT77126.1| predicted DNA-binding response regulator in two-component
           regulatory system [Escherichia coli W]
 gi|323376613|gb|ADX48881.1| transcriptional regulator, LuxR family [Escherichia coli KO11]
 gi|324021178|gb|EGB90397.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3]
 gi|331062412|gb|EGI34332.1| putative HTH-type transcriptional regulator YhjB [Escherichia coli
           TA271]
 gi|332104433|gb|EGJ07779.1| transcriptional regulator [Shigella sp. D9]
          Length = 200

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI+  L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKEISRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|194476803|ref|YP_002048982.1| two component transcriptional regulator, LuxR family protein
           [Paulinella chromatophora]
 gi|171191810|gb|ACB42772.1| two component transcriptional regulator, LuxR family protein
           [Paulinella chromatophora]
          Length = 254

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 10/190 (5%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
           W+  QE   D +V SD          L +  +    L     +F        + I     
Sbjct: 65  WEKAQEILPD-LVISDVMMPRCDGYKLLKLLRTDERLGGTPVIFLTAKGMTADRIEGFQA 123

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-- 183
             + Y    FD   + + +  +  +   +L +          + A            +  
Sbjct: 124 GVDDYIPKPFDPDELVVRVRNVVRRQERLLTEAARFADADIGHMAKQITEIRSLLAGNKK 183

Query: 184 -------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   + T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  
Sbjct: 184 KLAEAVLHDFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFVKTTTSSRTEL 243

Query: 237 IAYAVRNNIV 246
           + YA+ +++V
Sbjct: 244 VRYALEHSLV 253


>gi|149378247|ref|ZP_01895960.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
 gi|149357474|gb|EDM45983.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
          Length = 220

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
            LP ++   +  ++         A     L     +  ++   +    GLL       + 
Sbjct: 95  GLPVSVVVISSREDEASVRAARSAGAVGFLPKSAGRRSLVRMVQRVSNGLL------FYP 148

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S          LT R++E LT +++G  +  I   L ++ +TV  ++ +I        R+
Sbjct: 149 SLPFPSLSPEHLTPRQLEVLTLLADGLPNKRICQALDLTEHTVKTHLKAIFTHLDVHNRT 208

Query: 235 GAIAYAVRNNIV 246
             +A A    ++
Sbjct: 209 ECVAQARALGLL 220


>gi|154243760|ref|YP_001409333.1| autoinducer-binding domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162882|gb|ABS70097.1| Autoinducer-binding domain protein [Xanthobacter autotrophicus Py2]
          Length = 233

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 83/218 (38%), Gaps = 21/218 (9%)

Query: 45  WTMRMYALTEYVGASHFL--------LVRWDLFQEQKLDSIVSSDWPF-DLVRCMALSEK 95
               +  L + +G   +         +     +  +     ++ ++   D V  MA ++ 
Sbjct: 21  LKEALAELVQDLGFDGYAYLNVQPVRIFAVSNYASEWQARYLTQNYAMIDPVVTMAKAQM 80

Query: 96  DKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
             +      P  L  P+  F++   +    +G      S+    A   + ++ L      
Sbjct: 81  KAFAWAAAAPRSLSKPLRRFYSEASDFGIRSG-----ISIPVRTAFGHLSMLTLASHKPS 135

Query: 154 ILR----DRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           +      D++  +  +A   A M +   +     + +L  ++  CL W +EGKT  +IA 
Sbjct: 136 LNLETDIDQIAAVTAVAQLHAKMEQQDAEPTASVEIDLKAKQALCLKWSAEGKTMKDIAS 195

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I G+S  TVN ++ +  +     + + A A A +  ++
Sbjct: 196 IEGMSFATVNFHLNNARKALDAGSLAQATALATKLKLI 233


>gi|209548992|ref|YP_002280909.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534748|gb|ACI54683.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 206

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M  S +    +   LT RE E +  +++G ++  I + L +   TV +++  I+ K    
Sbjct: 135 MENSLNGGATEKNGLTPREREVMDLVAQGLSNKHIGLRLSLQEKTVKHHMTQILSKLGVS 194

Query: 232 TRSGAI 237
            R+ A 
Sbjct: 195 NRTEAA 200


>gi|148977018|ref|ZP_01813664.1| response regulator [Vibrionales bacterium SWAT-3]
 gi|145963678|gb|EDK28939.1| response regulator [Vibrionales bacterium SWAT-3]
          Length = 210

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+         ++  A              +LT RE++ L  +++G  + +IA  L IS
Sbjct: 116 LLKQAHSGDKAYSSVVARYLNDAGSRNDIFDQLTEREMQILQEVAKGYRNKQIADHLFIS 175

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 176 ESTVKVHMKSLLKKLQVPSRTAATV 200


>gi|27468887|ref|NP_765524.1| response regulators of two-component regulatory [Staphylococcus
           epidermidis ATCC 12228]
 gi|81842572|sp|Q8CN75|NREC_STAES RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|27316435|gb|AAO05610.1|AE016750_215 response regulators of two-component regulatory [Staphylococcus
           epidermidis ATCC 12228]
          Length = 218

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L          ++    L   V  +  G   +           +     L     N 
Sbjct: 91  FHMLKSGAKGYILKNSPDEQLILAVRTVYQGETYVD----------MKLTTSLVNEFVNQ 140

Query: 173 FKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            ++ +V    D    L+ RE+E L  I++G  + +IA  L +S  TV  +   IM K   
Sbjct: 141 SQTDEVSSSSDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNL 200

Query: 231 KTRSGAIAYAVRNNIV 246
           K++   + YA++  ++
Sbjct: 201 KSKPELVEYALKKKLL 216


>gi|239941886|ref|ZP_04693823.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291445336|ref|ZP_06584726.1| response regulator [Streptomyces roseosporus NRRL 15998]
 gi|291348283|gb|EFE75187.1| response regulator [Streptomyces roseosporus NRRL 15998]
          Length = 234

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 6/148 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           E  +      RP  +         E++          +      V  +  G+ LL   G 
Sbjct: 67  EVLRGLRASARPPRVAVLTGFGEDEHVRRALRAGAAGFLLKDSAVDELIPGVRLLAAGGS 126

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +    +  +   A  +A               LT RE E L  +  G +++EI   L +
Sbjct: 127 ALSERVVRSLPDGAGKEAAPADPPGARL-----LTAREREVLELLPSGMSNEEIGRRLFL 181

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYA 240
           SR TV ++++S++ K     R  A   A
Sbjct: 182 SRTTVRDHVSSLLAKLGAANRVQAAVIA 209


>gi|160878241|ref|YP_001557209.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426907|gb|ABX40470.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 212

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 73/199 (36%), Gaps = 23/199 (11%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRC---------------MALSEKDKYYNVLQRPT 106
           ++     F    +  I+S D  F++V C               + +   D    V+    
Sbjct: 7   IIADDSDFVRDGMRIILSVDPDFEVVGCAKNGKEAVELASKSSVDVILMDIEMPVMNGIE 66

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII---LRDRLWEIG 163
                V H L + +      D+    +   +     G ++       +   ++     + 
Sbjct: 67  ATKEIVLHNLGKVLILTTFDDDEL--VEQSIQNGAKGYLIKNHTPEKLKQMIKSIYNGVN 124

Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +L       F S  +H    F+    T RE++ +  ++EG ++ EIA  L IS  TV N+
Sbjct: 125 VLDEKVFEKFTSRSIHTNTGFDPNGYTTRELDIIASVAEGLSNKEIAKKLFISEGTVKNH 184

Query: 221 IASIMRKTATKTRSGAIAY 239
           I++I+ K     R+    Y
Sbjct: 185 ISTILEKGGFSHRTQLAVY 203


>gi|83745537|ref|ZP_00942595.1| Hypothetical Protein RRSL_04596 [Ralstonia solanacearum UW551]
 gi|207722406|ref|YP_002252842.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207738930|ref|YP_002257323.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83727614|gb|EAP74734.1| Hypothetical Protein RRSL_04596 [Ralstonia solanacearum UW551]
 gi|206587585|emb|CAQ18167.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206592301|emb|CAQ59207.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 217

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 6/162 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIG 143
           +    LS  +    ++Q   E    V     E              Y     +   +  G
Sbjct: 56  LNMPGLSGLETLQLLVQDLPEAAVVVLTVSEEADELKATLREGARGYLVKNIEADALVAG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I         L+A ++A   K           LT RE + +  +  G ++
Sbjct: 116 VRKAAAGEPVIAES--MTAKLVAHFRAPE-KPVQPEAVPVERLTLRERDIVQGLVRGDSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L ++ +TV  ++ +I++K    +R     YAV   +
Sbjct: 173 KEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVEKGL 214


>gi|152966473|ref|YP_001362257.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360990|gb|ABS03993.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     L   V     G  L+ P   + L  R             
Sbjct: 93  VHAALRAGACGFLLKDAGPTLLVEAVRAAAAGESLISPAITVRLLQRFAAAA-------- 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + D   G+   L+ RE++ +  ++ G T+ E+   L IS  TV  +++S+  K + +
Sbjct: 145 --PAPDSRAGE--MLSERELDVVRLVARGGTNAEVGAELFISLGTVKAHLSSVQTKLSAR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R    A+A  N +V
Sbjct: 201 NRVEVAAWAWENGVV 215


>gi|299137407|ref|ZP_07030589.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600812|gb|EFI56968.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 206

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 36/69 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V    D  L+ RE+E L  ++ G ++  +A  L +S  TV  ++ SI+ K   + R+ A+
Sbjct: 136 VEHLADDALSEREIEVLRSVASGNSNKLVAEQLAVSEATVKGHMKSILSKLGAQDRTHAV 195

Query: 238 AYAVRNNIV 246
             A++   +
Sbjct: 196 TIALKRGFI 204


>gi|222432075|gb|ACM50923.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 242

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M ++      K+   + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K   
Sbjct: 164 EMIENKKPLNNKEI-FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 231 KTRSGAIAYAVRNNIV 246
                AI   V   ++
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|254227764|ref|ZP_04921195.1| HTH DNA binding domain family [Vibrio sp. Ex25]
 gi|262395807|ref|YP_003287660.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25]
 gi|151939806|gb|EDN58633.1| HTH DNA binding domain family [Vibrio sp. Ex25]
 gi|262339401|gb|ACY53195.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25]
          Length = 210

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 14/132 (10%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANMFKS 175
                G + R   LT   +   I  ++       +L     D L E+ L  A+Q +   S
Sbjct: 70  ALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVEL-LKQAHQGDKAYS 128

Query: 176 YDVH---------WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +V                LT RE + L  ++ G  + +IA  L IS +TV  ++ S+++
Sbjct: 129 QEVSKYLSERSGQEDVFDTLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLK 188

Query: 227 KTATKTRSGAIA 238
           K    +R+ A  
Sbjct: 189 KLQVPSRTAATV 200


>gi|84387471|ref|ZP_00990490.1| response regulator [Vibrio splendidus 12B01]
 gi|84377724|gb|EAP94588.1| response regulator [Vibrio splendidus 12B01]
          Length = 210

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+         ++  +      +       +LT RE++ L  +++G  + +IA  L IS
Sbjct: 116 LLKQAHHGDKAYSSVVSRYLNDAESRNDIFDQLTEREMQILQEVAKGYRNKQIADHLFIS 175

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 176 ESTVKVHMKSLLKKLQVPSRTAATV 200


>gi|313674425|ref|YP_004052421.1| two component transcriptional regulator, luxr family [Marivirga
           tractuosa DSM 4126]
 gi|312941123|gb|ADR20313.1| two component transcriptional regulator, LuxR family [Marivirga
           tractuosa DSM 4126]
          Length = 196

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 34/53 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             T RE+E +  ++ GK+S EIA IL IS  TV+ + ++I++K+  K+ +  I
Sbjct: 139 NFTSREIEIIKLLAAGKSSSEIAEILFISPQTVSKHRSNILKKSGCKSSTELI 191


>gi|306825879|ref|ZP_07459218.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432240|gb|EFM35217.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 199

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLNAGNRTEAANIAKESG 197


>gi|190891418|ref|YP_001977960.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696697|gb|ACE90782.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 207

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M  S          LT RE E +  +++G ++  I + L +   TV +++  I+ K    
Sbjct: 135 MENSLHDAASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVS 194

Query: 232 TRSGAI 237
            R+ A 
Sbjct: 195 NRTEAA 200


>gi|170780916|ref|YP_001709248.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155484|emb|CAQ00593.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 206

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE+E L  +++G ++ ++A  L I+  TV +++  +  K    +R+ A+A 
Sbjct: 139 RAPRVSLSSREIEVLRLVADGASNTDVAARLHITDATVKSHLVHVFSKLGVSSRTAAVAA 198

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 199 AREMGVL 205


>gi|114047794|ref|YP_738344.1| transcriptional regulator NarL [Shewanella sp. MR-7]
 gi|113889236|gb|ABI43287.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 221

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           + +     +      D     L   + +   G ++L      IL   L            
Sbjct: 100 IVNAFKYGVDGYLLKDMEPEDLLQSIQQAAAGKIVLSDAIAPILATGLRH---------- 149

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                     +D E LT RE + +  +S+G ++  IA  L I+  TV  ++ ++++K + 
Sbjct: 150 ----NPPATKRDIESLTAREKDIIRLVSQGLSNKMIARKLIITEGTVKVHVKNLLKKLSF 205

Query: 231 KTRSGAIAYAVRNNI 245
           K+R  A  + ++ NI
Sbjct: 206 KSRVEATVWILQENI 220


>gi|302521642|ref|ZP_07273984.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302430537|gb|EFL02353.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 249

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
              P    L   +    G D    +    +      +   F   +++   R    G  A 
Sbjct: 105 TVLPRLARLAPVLVITYGRDAELHARARRLGAAGCLVHGDFTVPQLVGAVRHLRAGAPA- 163

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                 K   V       L+ RE E +  I+ G  + +IA    I+  TV N+I  I  K
Sbjct: 164 LPPPSQKQSPVRPSWGGPLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAK 223

Query: 228 TATKTRSGAIAY 239
             T TRS AIA 
Sbjct: 224 LQTTTRSEAIAR 235


>gi|157370075|ref|YP_001478064.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321839|gb|ABV40936.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 238

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 20/226 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
                + ++  P R   L+++ P    + +         Y   S +   R  +  E    
Sbjct: 6   QPLMDALLTSQPDRKVFLSQLAPCAQALGFEYF-----SYTVFSCYPASRPKMLIEGNFP 60

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--TPPAGMDNRYCSL 133
                D+    V       +  +++ LQ   +     +   PE        G+   +   
Sbjct: 61  ECYLEDYRKLRVYLQDPVIEQAHHSTLQFYWDEH--FYQDKPELWWRMAQFGIREGWSQS 118

Query: 134 TFDVARIRIGLMLLFPKGRIILRDR---------LWEIGLLAAYQANMFKSYDVHWGKDF 184
             D    R+G++    K   +   +         LW   ++         S +    KD 
Sbjct: 119 VKD-CYGRLGILTFAGKSIPVQSPQASARNETFFLWLAQMVHKTLREALISVNDEAIKDV 177

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            LT RE + L W SEGKTS+E A+++G+S  TVN +I + ++K + 
Sbjct: 178 -LTLREKDILRWCSEGKTSEETALLMGLSERTVNFHIGNSIKKLSV 222


>gi|83952281|ref|ZP_00961013.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM]
 gi|83837287|gb|EAP76584.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM]
          Length = 219

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE E L  + +G T+ +I+  LG+S NTV  Y+ +I +K    +R GAIA 
Sbjct: 160 LSRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLGVNSRGGAIAK 213


>gi|324111848|gb|EGC05828.1| luxR family protein regulatory protein [Escherichia fergusonii
           B253]
          Length = 200

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSVRQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLDVKNRTQAA 193


>gi|254209388|ref|ZP_04915734.1| DNA-binding response regulator NarL [Burkholderia mallei JHU]
 gi|147750161|gb|EDK57232.1| DNA-binding response regulator NarL [Burkholderia mallei JHU]
          Length = 246

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K    +R     YAV   
Sbjct: 178 QLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERG 237

Query: 245 I 245
           +
Sbjct: 238 L 238


>gi|37676042|ref|NP_936438.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|37200582|dbj|BAC96408.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
          Length = 224

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE + +T +S G ++ +IA  L +  NTV  ++ +I +K   K R  A+ +A  +
Sbjct: 158 KLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNRVQALIWAKEH 216


>gi|269102423|ref|ZP_06155120.1| transcriptional regulator VpsT [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162321|gb|EEZ40817.1| transcriptional regulator VpsT [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 219

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
              S    +  +   + ++   G  + R  L +  +L  Y+ +   +          LT 
Sbjct: 101 GILSKDSPIEHLIKSIAVVIEHGLWLPRQTLEQ--MLDYYRNHKPSNDTRLLPTQPLLTR 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           RE + L  ++EGKT+ EIA  L ++  TV ++I ++ +K   K R  AI
Sbjct: 159 REKQILGLLTEGKTNIEIAETLFVAETTVKSHIYNLYKKIDVKCRKEAI 207


>gi|237794891|ref|YP_002862443.1| transcriptional regulator, LuxR family [Clostridium botulinum Ba4
           str. 657]
 gi|229263459|gb|ACQ54492.1| transcriptional regulator, LuxR family [Clostridium botulinum Ba4
           str. 657]
          Length = 865

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           +L+   E     F+ L E I     +DNRY           + ++      + I      
Sbjct: 725 ILEEFNESKRTTFNLLREAIH--YSVDNRYLRPYVLEGEKLLNIIKELKNDKDIELTSKE 782

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +      +  N+    +    K   LT RE E +  + EG ++ +I   L IS  TV  +
Sbjct: 783 D-----NFIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNISLATVKTH 837

Query: 221 IASIMRKTATKTRSGAI 237
           + +I  K     R  A+
Sbjct: 838 MINIYSKLQVSNRVQAV 854


>gi|168182481|ref|ZP_02617145.1| transcriptional regulator, LuxR family [Clostridium botulinum Bf]
 gi|182674457|gb|EDT86418.1| transcriptional regulator, LuxR family [Clostridium botulinum Bf]
          Length = 865

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           +L+   E     F+ L E I     +DNRY           + ++      + I      
Sbjct: 725 ILEEFNESKRTTFNLLREAIH--YSVDNRYLRPYVLEGEKLLNIIKELKNDKDIELTSKE 782

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +      +  N+    +    K   LT RE E +  + EG ++ +I   L IS  TV  +
Sbjct: 783 D-----NFIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNISLATVKTH 837

Query: 221 IASIMRKTATKTRSGAI 237
           + +I  K     R  A+
Sbjct: 838 MINIYSKLQVSNRVQAV 854


>gi|254229254|ref|ZP_04922672.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262393135|ref|YP_003284989.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25]
 gi|151938178|gb|EDN57018.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262336729|gb|ACY50524.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25]
          Length = 214

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 152 VDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|91790427|ref|YP_551379.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91699652|gb|ABE46481.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 236

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 21/157 (13%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   V     +         + Y   T ++  +   ++ +     ++  + +    L+AA
Sbjct: 81  LMLTVSENEDDLAAALQAGADGYLLKTVELDSLSESIIKVLDGESVVSPEMM--TKLVAA 138

Query: 168 YQANMFKSYDVHWGKDFE-------------------LTGREVECLTWISEGKTSDEIAV 208
           +++    S       + E                   L+ RE E L  IS G ++  IA 
Sbjct: 139 FRSRALSSATGETAANEEGHDEAAPVPGRQDDSAIALLSAREREVLARISHGDSNKVIAR 198

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L I+  TV  ++  I+RK    +R  A  YA  +++
Sbjct: 199 KLDIAETTVKIHVQHILRKLQLSSRVQAAVYAAAHDL 235


>gi|329945858|ref|ZP_08293545.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328528306|gb|EGF55284.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 223

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 15/177 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           P  L+  + +   D      Q   E     +      +  E I     M +R   +  DV
Sbjct: 47  PDILLMDIQMPGGDGLSAAEQILAEDAGARIVFLTTFSDDEYIVRALKMGSRGYLIKQDV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLL-------AAYQANMFKSYDVHWGKDFELTGRE 190
           A++   L  +     ++  + L     +       A+      +  D        LT RE
Sbjct: 107 AQVAPALRSVMAGVCVLEGEVLERSATMGLSARPQASGTDRGREHQDPRSTAFAALTDRE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY--AVRNN 244
            E +  ++EG  + E+A  L +S  TV N+I++I+ K   + R+  A+ Y  A +  
Sbjct: 167 YEVVEAVAEGLDNGEVAARLFMSEGTVRNHISAILAKLGLRNRTQVAVMYYRAAQTG 223


>gi|307327703|ref|ZP_07606887.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886601|gb|EFN17603.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 233

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 4/144 (2%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           + P       F                +     D  ++   +  L   G ++        
Sbjct: 84  RSPAVAMLTTFDVQEYLAAALRAGAAGFLLKDTDPEQLVRAVRTLAEGGSVLDPAVTR-- 141

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++  Y A   ++          LT RE E L  + EG  + +IA  +G++ +TV +++ 
Sbjct: 142 AVIGGYLAAEAEATAAEAV--EALTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVR 199

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K     R  A   A R  +V
Sbjct: 200 AVLGKLGGLNRVQAAIVADRAGLV 223


>gi|299532904|ref|ZP_07046291.1| ATP-dependent transcription regulator LuxR [Comamonas testosteroni
           S44]
 gi|298719128|gb|EFI60098.1| ATP-dependent transcription regulator LuxR [Comamonas testosteroni
           S44]
          Length = 857

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           RIG  L         R+ L ++       A+  K    H G     + RE E L  ++ G
Sbjct: 755 RIGAWLTSAAPLPAPREYLHQVLAAGRSTADAQKKP-RHIGT---FSQRERELLQALALG 810

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + EIA  L ++ NTV  Y+  +  K     R+ AIA A R +++
Sbjct: 811 GRNQEIAQRLQLTENTVKWYLKRLYMKLDAHNRTQAIAQARRLHLL 856


>gi|271964741|ref|YP_003338937.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507916|gb|ACZ86194.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 61/183 (33%), Gaps = 5/183 (2%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPP 123
           D  +  ++  +V  D     VR   +   +    +++   R   L    F          
Sbjct: 36  DGDEAARMARMVRPDVVLMDVRMPGVDGIEATRRIVRDSPRSRVLILTTFDLDEYAFAGL 95

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +         +   +  +      +         LL  +   +         + 
Sbjct: 96  KAGASGFLPKNTRPEELLAAIRSVAAGDAAVSPRITRR--LLEKFAPQLMPGAPERDERL 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  ++ G ++ E+A  + ++  TV  + + ++ K   + R+  + +A  +
Sbjct: 154 ALLTSREHEVLVQVARGLSNAEVATAMHLAEATVKTHFSRVLLKLGLRDRAQVVVFAYES 213

Query: 244 NIV 246
            ++
Sbjct: 214 GLI 216


>gi|258654854|ref|YP_003204010.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558079|gb|ACV81021.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 209

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +    +       +T RE++ L  +++G ++ EIA  L +S +TV  +   + RK     
Sbjct: 135 WDGRPIEHRPSLAVTDRELQILRGMTDGFSNLEIAKQLFVSEDTVKTHARRLFRKLGAND 194

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+A  +R  +V
Sbjct: 195 RAHAVALGMRFELV 208


>gi|323497110|ref|ZP_08102130.1| two component LuxR family transcriptional regulator [Vibrio
           sinaloensis DSM 21326]
 gi|323317685|gb|EGA70676.1| two component LuxR family transcriptional regulator [Vibrio
           sinaloensis DSM 21326]
          Length = 209

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 16/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++          D     L   + ++  G   L P+      DRL E          
Sbjct: 90  VVRSVKAGAKGYVLKDVGSEELVMAINQVAQGRSYLCPQ----ASDRLLE---------- 135

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  +    KD  L+ RE + L  I+ G  + EIA  L IS  TV  +   I +K    
Sbjct: 136 --QINEEPEQKDDTLSKRESDVLKAIANGACNKEIADSLHISVRTVETHRLRIKKKLGAT 193

Query: 232 TRSGAIAYAVRNNIV 246
           + +  +  A++  +V
Sbjct: 194 STAALVKLALQKGLV 208


>gi|255525483|ref|ZP_05392420.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296188583|ref|ZP_06856971.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255510848|gb|EET87151.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296046847|gb|EFG86293.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 214

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EL+ RE E    +S G  + +IA  L IS  TV NYI++I  K  T  R+ A   
Sbjct: 155 ELSERETEIAKMLSMGFNNKQIASSLFISEGTVKNYISNIYSKLGTSDRTSAAIM 209


>gi|297543943|ref|YP_003676245.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841718|gb|ADH60234.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 257

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFE-LT 187
             +  F +    +G + +      +  + +  I LL    AN +K   D+   +D E LT
Sbjct: 138 CIATPFHIDNQIVGYLDISIIEHNMADEMMGFIDLLVYKIANEYKREMDLESQEDLEKLT 197

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++E +   ++G T   I++ LG+   TV  +   I++K   K    AIA A+R N++
Sbjct: 198 DKQIEIIKKCAKGYTELAISMELGLKPATVKYHKKEIIKKLRVKNFQQAIAKAIRLNLI 256


>gi|240169124|ref|ZP_04747783.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
            12478]
          Length = 1092

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E E ++ + EG ++ +IA  L +S  TV  ++  +  K    +R      AVR+
Sbjct: 1034 LTPAEREVVSLVGEGLSNKDIAARLFVSPRTVQTHLTHVYTKLDLNSRVQLAQEAVRH 1091


>gi|322392560|ref|ZP_08066020.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321144552|gb|EFX39953.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 199

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +EV  L  +++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADQLYLSNGTVRNYMTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A    
Sbjct: 177 ILSKLGASNRTEAAKTAEEEG 197


>gi|260222153|emb|CBA31434.1| hypothetical protein Csp_F37510 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 222

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ++   A++F    V    + +LT  E   L  + EG TS EIA+ L IS  TV  +  ++
Sbjct: 134 ISNDIASLFVDDSVTEATEIKLTNSETTILQLVGEGLTSREIALKLNISEGTVRKHRENL 193

Query: 225 MRKTATKTRSGAIAYAVRN 243
             K   +  +   AYA+R 
Sbjct: 194 RSKLGIRNSAEMAAYAIRT 212


>gi|239983271|ref|ZP_04705795.1| response regulator [Streptomyces albus J1074]
          Length = 202

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             R+   ++        +  D L    LL+        +     G    LT REV+ +  
Sbjct: 95  ARRLVSAVLAASRGDGDLPADLLG--SLLSQVGTLHRGAVGQQGGPSLGLTPREVDVVRL 152

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+EG  + EIA  L  S  TV N I  +  +   + R+ A+A+A+R   +
Sbjct: 153 IAEGLDTGEIAGKLSYSERTVKNVIHGVTTRLHLRNRAHAVAFALREGYI 202


>gi|161830943|ref|YP_001596915.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331]
 gi|161762810|gb|ABX78452.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331]
          Length = 216

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 12/159 (7%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
             +  +    +L+R  E+   V   +   + P   +D     + + + D   +   +  +
Sbjct: 59  DTNGLELARKLLRRDPEIKILVVTAMEGELLPMRLLDVGVRGFITKSSDSGELERAIRAV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R I       + L                    +L+ R++E L  +++G  ++EIA
Sbjct: 119 HSGQRYISSAIASRLAL---------SKTTPTKSPFDQLSHRQMEVLLLLAKGMKAEEIA 169

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L I+  TVN++   +  K   K     I  AV+  ++
Sbjct: 170 KQLHITTKTVNSHRYRMFDKLGVKNDVELIKLAVQYGVI 208


>gi|333027222|ref|ZP_08455286.1| putative response regulator [Streptomyces sp. Tu6071]
 gi|332747074|gb|EGJ77515.1| putative response regulator [Streptomyces sp. Tu6071]
          Length = 247

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G L +    + +      G    L  RE + L  ++EG  + EIA  L  S  TV N +
Sbjct: 163 LGRLISQVGTLHRGNGAAGGTTLGLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVM 222

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             +  +   + R+ A+AYA+R   +
Sbjct: 223 HGLTTRLHLRNRAHAVAYALRQGYI 247


>gi|320353750|ref|YP_004195089.1| LuxR family two component transcriptional regulator [Desulfobulbus
           propionicus DSM 2032]
 gi|320122252|gb|ADW17798.1| two component transcriptional regulator, LuxR family [Desulfobulbus
           propionicus DSM 2032]
          Length = 212

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 21/182 (11%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++ +  +V +D    L+  +    + K  N      +    VF T+         +D  Y
Sbjct: 44  DRLMPDVVVADVSMPLLNGIEAVRQLKKKN------KEIAVVFLTMH--------LDVAY 89

Query: 131 CSLTFDVARIRIGLMLLFPKGRII-----LRDRLWEIGLLAAYQAN--MFKSYDVHWGKD 183
            +  F+       L    P   ++     L+ R +   LLA    N    +      G  
Sbjct: 90  AASAFEAGASGYVLKHSAPSELLVAIGSALKGRTYITPLLAGELLNYQRNRPSGDQEGGV 149

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT R+ E L  I+EG +  E A +LGIS  TV  +  S+M     K+ +  + +AV +
Sbjct: 150 ARLTARQREVLQLIAEGLSVKEAAAVLGISSRTVEFHKYSMMEILGLKSSAELMRFAVEH 209

Query: 244 NI 245
            I
Sbjct: 210 GI 211


>gi|299536275|ref|ZP_07049588.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis
           ZC1]
 gi|298728261|gb|EFI68823.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis
           ZC1]
          Length = 243

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            E+T RE E L ++ +G  + EIA  L +S NT+  ++ ++ RK     R+  +A  ++
Sbjct: 180 LEMTDREREVLKFVFKGLKNIEIAKQLFVSENTIKKHLQNLYRKFQVTNRTQLLAKCLK 238


>gi|289754597|ref|ZP_06513975.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289695184|gb|EFD62613.1| predicted protein [Mycobacterium tuberculosis EAS054]
          Length = 677

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 610 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 668


>gi|221126751|ref|XP_002164776.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 202

 Score = 80.8 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ++   A++F    V    + +LT  E   L  + EG TS EIA+ L IS  TV  +  ++
Sbjct: 114 ISNDIASLFVDDSVTEATEIKLTNSETTILQLVGEGLTSREIALKLNISEGTVRKHRENL 173

Query: 225 MRKTATKTRSGAIAYAVRN 243
             K   +  +   AYA+R 
Sbjct: 174 RSKLGIRNSAEMAAYAIRT 192


>gi|218672704|ref|ZP_03522373.1| probable two-component response regulator protein [Rhizobium etli
           GR56]
          Length = 207

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M  S +        LT RE E +  +++G ++  I + L +   TV +++  I+ K    
Sbjct: 135 MENSLNGAASDKNGLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVS 194

Query: 232 TRSGAI 237
            R+ A 
Sbjct: 195 NRTEAA 200


>gi|145595040|ref|YP_001159337.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
 gi|145304377|gb|ABP54959.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
          Length = 964

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 35/75 (46%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             N   S      +   LT RE E L  ++EG T+ E+   L IS  T+  +++ I  K 
Sbjct: 884 AGNPTSSVPADGEELAVLTAREREVLAAVAEGLTNKEVGQRLFISERTIGVHVSHIFDKL 943

Query: 229 ATKTRSGAIAYAVRN 243
             +TR  A A  +RN
Sbjct: 944 QVRTRVQASAILLRN 958


>gi|57234151|ref|YP_181859.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224599|gb|AAW39656.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 247

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G T+ EI+V +  +  T+  Y+ SI+ K     R+ A   AV+  +
Sbjct: 187 LSPRELEILIMVARGYTNKEISVNMDYAEITIKKYVKSILSKLNVSNRTLAGIAAVKFGL 246

Query: 246 V 246
           V
Sbjct: 247 V 247


>gi|37521779|ref|NP_925156.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212777|dbj|BAC90151.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 224

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L+ IS+  T+ EIA  L IS  TV+++ A +M+K  T+  +G +  A+  
Sbjct: 156 IHLTEREREILSLISQEFTNIEIAERLFISPRTVDSHRARLMQKLGTRNTAGLVRIAMEY 215

Query: 244 NIV 246
            ++
Sbjct: 216 GLL 218


>gi|85705256|ref|ZP_01036355.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
 gi|85670129|gb|EAQ24991.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
          Length = 215

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +LT RE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+
Sbjct: 144 EREQLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIASTAGLTRYAL 203

Query: 242 RNNIV 246
            + ++
Sbjct: 204 EHGVL 208


>gi|317126429|ref|YP_004100541.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590517|gb|ADU49814.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 39/74 (52%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           + + + + H  +   L+  E   L  I+EG T+ ++   L ++  TV NY++S++ K   
Sbjct: 144 DRWAAREEHDPRLKALSPVERRILDLIAEGLTNRQVGDRLHLAEKTVKNYVSSVLSKMGM 203

Query: 231 KTRSGAIAYAVRNN 244
           +TR+ A  YA  + 
Sbjct: 204 ETRTQAAVYAATHR 217


>gi|257789944|ref|YP_003180550.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257473841|gb|ACV54161.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 493

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A  Q +  ++   H  + +  T RE E L  + +G+T+  I+  L +S NTV  +I SI 
Sbjct: 406 AEQQGDALEARCAHVAETYGFTPRESEILVHLGQGRTARAISEKLVVSENTVKYHIKSIY 465

Query: 226 RKTATKTR 233
           +K    +R
Sbjct: 466 QKLDVHSR 473


>gi|167761739|ref|ZP_02433866.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC
           43183]
 gi|167700375|gb|EDS16954.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC
           43183]
          Length = 206

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I++G  + EIA  L IS  TV  +  +I+ K   K+ SG   YAV + 
Sbjct: 140 ELSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVMHG 199

Query: 245 IV 246
            +
Sbjct: 200 YI 201


>gi|88861227|ref|ZP_01135860.1| putative transcriptional regulator, LuxR family protein
           [Pseudoalteromonas tunicata D2]
 gi|88816820|gb|EAR26642.1| putative transcriptional regulator, LuxR family protein
           [Pseudoalteromonas tunicata D2]
          Length = 218

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL   + N+ +  D    +   LT RE   +  +S+G  + EIA  L IS +TV  ++ S
Sbjct: 134 LLHFNKDNILQLTDT-LAEPISLTKREKAIIVLMSKGCKNKEIADELSISPHTVKTHLYS 192

Query: 224 IMRKTATKTRSGAIAYAVRN 243
             RKT  + R   +++A +N
Sbjct: 193 AFRKTKCRNRIELLSWAQQN 212


>gi|307710890|ref|ZP_07647317.1| transcriptional regulatory protein degU [Streptococcus mitis SK321]
 gi|307617335|gb|EFN96508.1| transcriptional regulatory protein degU [Streptococcus mitis SK321]
          Length = 199

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|302558364|ref|ZP_07310706.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475982|gb|EFL39075.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 213

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 5/167 (2%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           P  ++  + +   D        V +   ++       L E +            L    A
Sbjct: 48  PDVVLMDVQMPRLDGVSATRQVVGEGLADVLVLTTFDLDEYVFGALRAGAAGFLLKNTEA 107

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           +  I  +     G  I+   +    L+A + A   +           LT RE E L+ + 
Sbjct: 108 KDLITAVRTVAAGEGIVAPAVTRR-LIAEFAAKPARPVTADPAVLDSLTRREREVLSCLG 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG ++  IA  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 167 EGLSNAGIADRLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 213


>gi|222432077|gb|ACM50924.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 242

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K        AI   V   +
Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVELQL 237

Query: 246 V 246
           +
Sbjct: 238 I 238


>gi|158318427|ref|YP_001510935.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113832|gb|ABW16029.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 398

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 2/160 (1%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +  S  D       R   L    F              + +         +  G+  +
Sbjct: 220 RMLLESNPDTEVAGGGRSRILILTTFDLDEYVHAALRAGASGFLLKDAYPEELLAGIRAV 279

Query: 148 FPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDE 205
                +I        +   A +  +     +       + LT RE E L  I  G T+ E
Sbjct: 280 AVGDAVIAPALARRLLDAFAQHLGDALPDGERAADPRLDTLTEREREILVAIGHGWTNGE 339

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L +S +TV  ++  ++ K   + R  A+  A    +
Sbjct: 340 IAERLVLSESTVKTHVGRMLAKIGARDRVQAVICAYDLGL 379


>gi|16766892|ref|NP_462507.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167549170|ref|ZP_02342929.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990827|ref|ZP_02571926.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168465108|ref|ZP_02699000.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197265905|ref|ZP_03165979.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16422168|gb|AAL22466.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|195632478|gb|EDX50962.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197244160|gb|EDY26780.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205325818|gb|EDZ13657.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330641|gb|EDZ17405.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248759|emb|CBG26609.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267995841|gb|ACY90726.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160145|emb|CBW19665.1| hypothetical luxR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914630|dbj|BAJ38604.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226657|gb|EFX51707.1| Putative regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323131966|gb|ADX19396.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990457|gb|AEF09440.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 200

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +   E+        PE       MD     L   +      ++         +      +
Sbjct: 59  EFCREVLQRTAQQFPEVKIIITAMDGSQKWLHEVMQFNVQAVVPRDSDAETFV------L 112

Query: 163 GLLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNT 216
            L A  +  MF   D     + E      L+ R+ E L  ++ G+++ +I   L IS  T
Sbjct: 113 ALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTGT 172

Query: 217 VNNYIASIMRKTATKTRSGAI 237
           V  ++ S+ R+   K R+ A 
Sbjct: 173 VKAHLESLYRRLDVKNRTQAA 193


>gi|50119067|ref|YP_048234.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609593|emb|CAG73026.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 242

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K        AI   V   +
Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVELQL 237

Query: 246 V 246
           +
Sbjct: 238 I 238


>gi|326773342|ref|ZP_08232625.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326636572|gb|EGE37475.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 255

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    G    LTGRE   L  + +G ++  I   L ++ +TV +++ +I+ KT   
Sbjct: 178 AVPVVGAPSGPYEALTGREDAVLALVCQGLSNASIGERLHVAESTVKSHVKTILGKTGCH 237

Query: 232 TRSGAIAYAVRNNIV 246
            R   + YA+   +V
Sbjct: 238 NRVELVIYALTTGLV 252


>gi|168185605|ref|ZP_02620240.1| response regulator [Clostridium botulinum C str. Eklund]
 gi|169296459|gb|EDS78592.1| response regulator [Clostridium botulinum C str. Eklund]
          Length = 206

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 8/136 (5%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    F                Y     +   I   L  ++    +  RD L  +     
Sbjct: 78  IILTTFKDDEYIAEAIKNGAEGYILKNQNSDSIIECLRTVYNGNGVFQRDILNSLM---- 133

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                             LT RE E L  I EG ++ EI+  + +S  T+ NYI ++++K
Sbjct: 134 ----CMIKNKKKSSNKINLTEREFEILALIGEGLSNKEISKKVYLSEGTIRNYITNLLQK 189

Query: 228 TATKTRSGAIAYAVRN 243
              + R+    Y ++N
Sbjct: 190 LQLRDRTQLAIYYLKN 205


>gi|86138963|ref|ZP_01057534.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           MED193]
 gi|85824194|gb|EAQ44398.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           MED193]
          Length = 255

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 87/257 (33%), Gaps = 26/257 (10%)

Query: 12  LNRED--EQRTSFVSHLPTRSDL---LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +N  D   +    V+ + T+++L   L  +            +  + +     H +    
Sbjct: 1   MNLGDLLPEIDWQVNRMATKAELDKILTALDATQTLEGLQSIIECICKVFAIDHAMY--- 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-- 124
             + +   D      +     +        +   V+    + F PV     +  + PA  
Sbjct: 58  -HWVDSAGDHYYFGTYSEAWTQQYQEKNYTRIDPVVIGCYQRFHPVDWRRLDWSSKPARE 116

Query: 125 --------GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAY--Q 169
                   G+ N+  S+       +  L  +         D+       ++ L+  Y  +
Sbjct: 117 FFDAAMEHGVGNQGYSIPIRGPNGQFALFSVSHHCDDAAWDKFCDQNSRDLILIGHYFNR 176

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             +    D    +   L+ RE++ LT +  G +  ++A  L IS +T+  YI S   K  
Sbjct: 177 KALEFEPDRAPEQAQPLSPRELDALTLLGIGYSRAQVAQTLSISEHTLRVYIESARFKLG 236

Query: 230 TKTRSGAIAYAVRNNIV 246
               + AIA AV   ++
Sbjct: 237 ALNTTHAIARAVSCGLI 253


>gi|319795895|ref|YP_004157535.1| ATP-dependent transcriptional regulator malt-like, luxr family
           [Variovorax paradoxus EPS]
 gi|315598358|gb|ADU39424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Variovorax paradoxus EPS]
          Length = 914

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E+  L  ++EG +++ +A  L +S +TV  ++ +I  K   K+R+ A+A A +  
Sbjct: 852 PLTRKEIRVLQLLAEGYSNNAMAEKLFVSDSTVRTHLRNINMKLDAKSRTQAVAIARKVG 911

Query: 245 IV 246
           ++
Sbjct: 912 VI 913


>gi|282853097|ref|ZP_06262434.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582550|gb|EFB87930.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922742|gb|EFS86573.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965826|gb|EFT09925.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982968|gb|EFT27060.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091273|gb|EFT63249.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094508|gb|EFT66484.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315105228|gb|EFT77204.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327329003|gb|EGE70763.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 218

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 78  VSSDWPFDL-VRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           V    P D+ +  + + + D       +   P +    +  T   +    A +       
Sbjct: 45  VLRRMPVDVALMDIRMPQMDGVEATQRITASPLDTKVLILTTFDLDEYVYAALKAGASGF 104

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192
               AR    L  +                 L  +      +      K    LT RE E
Sbjct: 105 LLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLSVLTDREKE 164

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    ++
Sbjct: 165 VLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLI 218


>gi|228991209|ref|ZP_04151167.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
 gi|228768433|gb|EEM17038.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
          Length = 438

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIG--LLAAYQANMFKS--YDVHWGKDFE 185
            S++  +     G +L   +   ++   RL  +G  +L+   A         +     +E
Sbjct: 318 SSVSEAIEAGAEGYVLKSVQPEELVAAIRLVHLGGTMLSQDVATRLFKEYSSMPKKPPYE 377

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE++ L  + EG    EIA  L +S  TV NY +SI  K     R  A+  A+
Sbjct: 378 LTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQVSGRGEAVKKAL 433


>gi|227114479|ref|ZP_03828135.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 242

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K        AI   V   +
Sbjct: 178 FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLNAKHAIRLGVELQL 237

Query: 246 V 246
           +
Sbjct: 238 I 238


>gi|91791113|ref|YP_552063.1| ATP-dependent transcription regulator LuxR [Polaromonas sp. JS666]
 gi|91700994|gb|ABE47165.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Polaromonas sp. JS666]
          Length = 397

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +      N Y  L  D      GL+                   L           D   
Sbjct: 272 SLRIAASNGYVRLYLDEGVELEGLLRRVVDKPQSPTPAFSYARTLLLAAGAASARQDAAP 331

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +    T RE++ L  +++G ++ E+A  L ++  TV  ++ +I  K   K R+GA+  A
Sbjct: 332 AEQERPTERELQILGLLADGLSNGEVAGRLVLTEGTVKWHLHNIYAKLGVKNRTGALREA 391


>gi|90579871|ref|ZP_01235679.1| putative nitrate/nitrite response regulator protein [Vibrio
           angustum S14]
 gi|90438756|gb|EAS63939.1| putative nitrate/nitrite response regulator protein [Vibrio
           angustum S14]
          Length = 208

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 40/84 (47%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L+  L      +       +S +       +LT RE + L  +++G+ + +IA  L IS 
Sbjct: 117 LKSALCGGKAYSDIVKECLESPNTPTNILSQLTDRETQILQEVAKGQRNRQIAEQLFISE 176

Query: 215 NTVNNYIASIMRKTATKTRSGAIA 238
            TV  ++ S+++K   K+R+ A  
Sbjct: 177 ATVKVHMKSLLKKLQVKSRTAATI 200


>gi|229822369|ref|YP_002883895.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568282|gb|ACQ82133.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 221

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  +S G ++ EIA  L +  +TV ++++ IM KTAT+ R   + +A  + +
Sbjct: 155 LSPRELEIVELLSRGSSNAEIAAALVLEPSTVKSHLSRIMTKTATRDRVQLVVWAFTHGV 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|116251601|ref|YP_767439.1| two component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256249|emb|CAK07330.1| putative two component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 207

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 5/131 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAY 168
           V    P        +     +L   + R  +G +L     R +   ++  L     ++  
Sbjct: 70  VLARSPTTKVLMLTVSEEVDTLLGALQRGAMGYVLKGVGSRGLAEAIQTVLRGSRYISPT 129

Query: 169 QANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +       +H G   +  LT RE E +  +++G ++  I + L +   TV +++  I+ 
Sbjct: 130 MSAKVMENSLHGGTPEKNSLTPREREVMDLVAQGLSNKHIGLRLSLQEKTVKHHMTQILS 189

Query: 227 KTATKTRSGAI 237
           K     R+ A 
Sbjct: 190 KLGASNRTEAA 200


>gi|331696047|ref|YP_004332286.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950736|gb|AEA24433.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 339

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 14/118 (11%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAA---------YQANMFKSYDVHWGKDFELT 187
           +    +    L+P G          +  LAA           A +  + DVH      LT
Sbjct: 216 IGDGHVYSSFLWPVGGSHAPRGHVRVTALAAPEDVPPGLTGLALLSPASDVH-----GLT 270

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  + EG ++ +IA  L ++  TV  ++  ++ K    TR+ A   A R  +
Sbjct: 271 PRELEVLGLLVEGCSNQQIAHTLVVAPRTVAAHLEHVLGKLGAPTRTLAAVRAERGGL 328


>gi|295690538|ref|YP_003594231.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295432441|gb|ADG11613.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC
           21756]
          Length = 137

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 41/82 (50%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LAA         +    +   LTG+EV  L  ++ G+++ E+A  LG+S NTV  ++A++
Sbjct: 55  LAARARPETFQRNDAALRALGLTGQEVRVLERLAAGRSNKEMARDLGLSPNTVKTHVANL 114

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K     R+ AI  A    ++
Sbjct: 115 YGKLEVSRRTQAIGKARDLALI 136


>gi|260201610|ref|ZP_05769101.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T46]
          Length = 293

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 226 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 284


>gi|91225640|ref|ZP_01260714.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269967600|ref|ZP_06181651.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
 gi|91189760|gb|EAS76034.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269827795|gb|EEZ82078.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
          Length = 214

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 152 VDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|88860328|ref|ZP_01134966.1| two-component system regulatory protein [Pseudoalteromonas tunicata
           D2]
 gi|88817526|gb|EAR27343.1| two-component system regulatory protein [Pseudoalteromonas tunicata
           D2]
          Length = 204

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              I        G L    A      +      + LT +E+  L  +S G  +  IA+ L
Sbjct: 109 EEFISAINTVISGQLVLQDALTHYLLNQQSPPSYHLTAKELSVLRCMSLGMANKAIALYL 168

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             S  T+ N+++ I+ K A   R+ A+  A++N +V
Sbjct: 169 DNSEGTIRNHVSQIIAKLAVHDRTQAVIKAIQNQLV 204


>gi|291614955|ref|YP_003525112.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291585067|gb|ADE12725.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 216

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            LAA     F S         ELT RE   L  +S+G T+ EI     ++  TV +Y+ S
Sbjct: 131 ALAADMLTEF-SNPHPIDSFSELTARETTILELLSQGLTNREIGERTYLAEKTVKHYMTS 189

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I++K   ++R+ A   A++ +
Sbjct: 190 ILQKLHVRSRTEAALIAMQRH 210


>gi|258655312|ref|YP_003204468.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258558537|gb|ACV81479.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 867

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 1/112 (0%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                R+R  + LL   G +   DRL          A   +           LT R+++ 
Sbjct: 756 PITADRVR-AVELLDALGAVGSADRLRSGLRRDGVVAVPPRPRAATRANPAGLTNRQLDV 814

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
              ++ G T+ EIA  L IS  T ++++++++ K     R   +  A    +
Sbjct: 815 AKLVARGFTNAEIADRLFISTKTADHHVSAVLAKLGVGNRRAVVVQADELGL 866


>gi|224023812|ref|ZP_03642178.1| hypothetical protein BACCOPRO_00528 [Bacteroides coprophilus DSM
           18228]
 gi|224017034|gb|EEF75046.1| hypothetical protein BACCOPRO_00528 [Bacteroides coprophilus DSM
           18228]
          Length = 149

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           ++  +A   + +    +        L+ RE E +  +  G T+ EIA  L IS +TV  +
Sbjct: 55  DLDAVAHKISTLMNVNEEEDSDQNSLSQREKEIIGCVVRGMTNKEIAEQLFISVHTVITH 114

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
             +I RK    + +G   YA+ N +V
Sbjct: 115 RRNITRKLQIHSAAGLTIYAIVNKLV 140


>gi|88807322|ref|ZP_01122834.1| response regulator like protein [Synechococcus sp. WH 7805]
 gi|88788536|gb|EAR19691.1| response regulator like protein [Synechococcus sp. WH 7805]
          Length = 234

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   L+ RE   L  +  G T+ EI   L I+  T   ++ SIMRK   K R+ A   A
Sbjct: 168 GQAHALSDRERMVLQQLCNGLTNREIGEALTIAETTARGHVQSIMRKLNVKDRTAAAVEA 227

Query: 241 VRNN 244
           +R +
Sbjct: 228 IRRH 231


>gi|302521952|ref|ZP_07274294.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. SPB78]
 gi|302430847|gb|EFL02663.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. SPB78]
          Length = 194

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 2/122 (1%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +   T +   +   +  +     ++         LLA +               
Sbjct: 75  RAGAAGFLLKTAEAGELVAAVRTVAAGDGVVDPAVTRR--LLAEFARGGTGRERPAPEGL 132

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L+ + EG  + EIA  + ++  TV +++  ++ K   + R  A   A   
Sbjct: 133 ARLTPREREVLSCLGEGLGNAEIAERIDVAEGTVKSHVRRLLAKLGLRNRLQASLLARDL 192

Query: 244 NI 245
            +
Sbjct: 193 GL 194


>gi|295097111|emb|CBK86201.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 150

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ R+ E L  ++ G+++ EI   L IS  TV  ++ ++ R+   K R+ A  Y  R
Sbjct: 91  LSERQREVLKLLAAGESNKEIGRNLNISAATVKAHLETLFRRLDVKNRTQAAMYYTR 147


>gi|238059874|ref|ZP_04604583.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881685|gb|EEP70513.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 217

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++ EI   + +S  TV +++++I+ K    +R  A   A R  +
Sbjct: 150 LTDREREILVHVADGLSNAEIGTRMYLSGGTVKDHVSAILTKLKVTSRVQAALIAQRAGL 209

Query: 246 V 246
           +
Sbjct: 210 L 210


>gi|160895826|ref|YP_001561408.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160361410|gb|ABX33023.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 245

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 5/133 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +          D    ++  +V  +  G   + P     L  R    G +A  Q  
Sbjct: 111 VLAAIEAGAMGYLLKDLAADAVLEEVRSLHAGGSPINPMVARKLLLRQQRAGAVAGLQPP 170

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         L+ RE+E L  ++ G T DE+A  LG+SR+TV  ++  I  K    
Sbjct: 171 A-----EPQAAAQALSARELEVLRLVARGHTLDEVARQLGVSRHTVRTFVRRIYGKLQVS 225

Query: 232 TRSGAIAYAVRNN 244
           +R+  +  A++  
Sbjct: 226 SRTQMMHVALQRG 238


>gi|319945743|ref|ZP_08019994.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319748103|gb|EFW00346.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 228

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 75/189 (39%), Gaps = 7/189 (3%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPEN 119
           +        + L+ I   D P  ++  + + + D       V +R  E+   +  T  ++
Sbjct: 29  VTSAVADGHEVLERI-PQDRPDVVLMDIRMPKMDGVMATKEVKERFPEVKIIILTTFDDD 87

Query: 120 ITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                 +    + Y         +   + +++  G +I  +   ++  + +  A    + 
Sbjct: 88  DFIFRALKYGASGYLLKGASTEELYQAIQIVYHGGAMINPNIASKVFQIFSQMAQSNYTI 147

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            V      +L+  E   +  +  G+++ EIA  L +S  T+ NY+++I+ K   + R+  
Sbjct: 148 SVSEEYVSDLSLTEWRIIQQVGFGESNKEIAAKLFLSEGTIRNYLSTILSKLNLRDRTQL 207

Query: 237 IAYAVRNNI 245
             ++V+  +
Sbjct: 208 AIWSVQKGV 216


>gi|302866185|ref|YP_003834822.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502743|ref|YP_004081630.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302569044|gb|ADL45246.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315409362|gb|ADU07479.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 212

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 14/130 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +            R   L   V R+  G  LL P               +       
Sbjct: 91  FAAIMAGAAGYVLKQIRGTDLVDAVRRVAAGQSLLDP--------------AITTRVLER 136

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +S      +   LT +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + 
Sbjct: 137 IRSGVEQPRELKSLTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLER 196

Query: 233 RSGAIAYAVR 242
           R+ A   A R
Sbjct: 197 RTQAAVLATR 206


>gi|254884986|ref|ZP_05257696.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|319640388|ref|ZP_07995112.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|254837779|gb|EET18088.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|317387991|gb|EFV68846.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 256

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 3/105 (2%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           IG M + P  +   +    E  +L      MF    +     F LTGRE+E L  I  G 
Sbjct: 154 IGNMSMAPGQKESEQ---VECTVLNLRNGEMFSPGVMIMNPAFGLTGREMEILRLIQRGF 210

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S EIA  L IS +TV+ +  +++RK   +    AI     + ++
Sbjct: 211 LSKEIADKLCISIHTVHIHRQNLLRKLGVQNSLEAIRLGQESGLL 255


>gi|271967702|ref|YP_003341898.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510877|gb|ACZ89155.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 59/179 (32%), Gaps = 25/179 (13%)

Query: 75  DSIVSS---DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG------ 125
           D +V S     P   +  + L   D      +    L       L    TP A       
Sbjct: 37  DDVVPSCLVHRPDLALVDIGLPGTDGLSATAELRRRLPSCKAVILTGLATPAALRRALDA 96

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +        ++   +  +    R+I  +       LA    N          +   
Sbjct: 97  GARGFVVKDTPAGQLAECVRRVVAGERVIDPE-------LAVAALN---------ARQNP 140

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L   +EG    EIA  L +S  TV NY++ I+ K   +TR  A+  A    
Sbjct: 141 LTTRELEVLKAAAEGAPVREIADRLFLSGGTVRNYLSRILAKIGARTRVEAVTIAREAG 199


>gi|116254846|ref|YP_770682.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|19338425|emb|CAD19127.2| two-component response regulator [Rhizobium leguminosarum bv.
           viciae]
 gi|115259494|emb|CAK10632.1| two-component response transcriptional regulator of mctP [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 214

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +      V  G D  LT RE + L  I  G+++ EIA  LGI+  T   +  ++ +K   
Sbjct: 136 DALMGERVEEGSD-PLTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGI 194

Query: 231 KTRSGAIAYAVRNNIV 246
            T +G I YA+ + IV
Sbjct: 195 TTTAGLIRYALDHGIV 210


>gi|37519842|ref|NP_923219.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210833|dbj|BAC88214.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 224

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 9/149 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            E+        P         D     L F        L  +     ++    L   G L
Sbjct: 72  VEVIRLFRSKDPSARILMVADDEEQVMLAFHAGANGCLLKSVQGH-ELLNAVGLVLSGYL 130

Query: 166 AAYQA-NMFKSYDVHWGKD-------FELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
              QA     + +   GK          LT RE E L  I++  T++EIA  L IS  TV
Sbjct: 131 VFGQAITRLVAEEQGTGKFGRAAGSVPRLTAREHEVLMLIAQELTNNEIAKRLYISPRTV 190

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++ A +M K  T+  +G +  A    ++
Sbjct: 191 DSHRARLMGKLGTRNTAGLVRIAAECGLL 219


>gi|303237715|ref|ZP_07324275.1| transcriptional regulator, LuxR family [Prevotella disiens
           FB035-09AN]
 gi|302482167|gb|EFL45202.1| transcriptional regulator, LuxR family [Prevotella disiens
           FB035-09AN]
          Length = 203

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ + +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV
Sbjct: 134 KNKILSNREIEVLSLVVQGYINKEIASKLCISLTTVITHRKNIMDKLGMKSVSALTIYAV 193

Query: 242 RNNIV 246
            +  V
Sbjct: 194 MHGYV 198


>gi|302391963|ref|YP_003827783.1| LuxR family transcriptional regulator [Acetohalobium arabaticum DSM
           5501]
 gi|302204040|gb|ADL12718.1| transcriptional regulator, LuxR family [Acetohalobium arabaticum
           DSM 5501]
          Length = 259

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ + RE+E    +  G  ++EIA  L IS NTV  ++ SI RK    +R+   +  ++ 
Sbjct: 196 YKFSNREIEVAKLVVSGLNNEEIAGELFISINTVKKHLYSIFRKIGVNSRAQLTSKLLKI 255

Query: 244 N 244
           N
Sbjct: 256 N 256


>gi|298247256|ref|ZP_06971061.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297549915|gb|EFH83781.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1002

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 131  CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW---GKDFELT 187
             +L        +   L   +    L  RL   G    Y   +  ++D +     +   L+
Sbjct: 884  ETLNLAGPEGYLRTFLDLGEPLRKLLRRLERAGSARGYAHTLLGAFDKNLDLPSRPRGLS 943

Query: 188  GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             RE E L  ++ G ++ +IA  L ++ +T+  ++  + +K   + R   +A A    IV
Sbjct: 944  EREYEILQLVARGMSNQDIADTLIVAVSTIKVHVRHLCQKLDVQNRIQMVARAREKGIV 1002


>gi|294054526|ref|YP_003548184.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613859|gb|ADE54014.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 210

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +    PE       + +    +   V    +G +        IL D + E+     +   
Sbjct: 72  ILAEDPEAKVVLISVFDLEEDVWNAVQCGVVGYLTKKAGNAEILIDAIREVAAGEEFFPA 131

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +         +  +LT RE++ L  ++ G ++ EI   + ++   V  +I     K    
Sbjct: 132 VIAKKLNRRKEAKDLTDRELKVLELLARGCSNKEIMDEMNLTLTMVKYHIVQTREKLGAL 191

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A    I+
Sbjct: 192 DRTQAVVKAFERGIL 206


>gi|239934239|ref|ZP_04691192.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291442685|ref|ZP_06582075.1| two-component system regulatory protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345580|gb|EFE72536.1| two-component system regulatory protein [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  +++G ++DEIA  + IS  T   ++   M K   + R+  +  A  + +
Sbjct: 155 LTDREREAVALVAQGLSNDEIAGRMVISPLTAKTHVNRAMTKLRVRDRAQLVVLAYESGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|224583267|ref|YP_002637065.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467794|gb|ACN45624.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 238

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   
Sbjct: 162 RERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNV 221

Query: 231 KTRSGAIA 238
           ++R  A  
Sbjct: 222 RSRIAATI 229


>gi|113970560|ref|YP_734353.1| transcriptional regulator NarL [Shewanella sp. MR-4]
 gi|113885244|gb|ABI39296.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 221

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           + +            D     L   + +   G ++L      IL   L            
Sbjct: 100 IVNAFKYGADGYLLKDMEPEDLLQSIQQAAAGKIVLSDAIAPILATGLRH---------- 149

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                     +D E LT RE + +  +S+G ++  IA  L I+  TV  ++ ++++K + 
Sbjct: 150 ----NPPATKRDIESLTAREKDIIRLVSQGLSNKMIARKLIITEGTVKVHVKNLLKKLSF 205

Query: 231 KTRSGAIAYAVRNNI 245
           K+R  A  + ++ NI
Sbjct: 206 KSRVEATVWILQENI 220


>gi|330998013|ref|ZP_08321844.1| hemerythrin HHE cation binding domain protein [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569314|gb|EGG51094.1| hemerythrin HHE cation binding domain protein [Paraprevotella
           xylaniphila YIT 11841]
          Length = 326

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A  +    +  D     +  L+ RE E +  + +G ++ EIA  L IS NTV  +  +I 
Sbjct: 239 AREENPQTEEQDGEDSANDALSDREKEVIVCVVKGMSNKEIAEQLYISVNTVMTHRRNIS 298

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    + +G   YA+ N ++
Sbjct: 299 RKLQIHSPAGLTIYAIVNGLI 319


>gi|326624070|gb|EGE30415.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 198

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   
Sbjct: 122 RERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNV 181

Query: 231 KTRSGAIA 238
           ++R  A  
Sbjct: 182 RSRVAATI 189


>gi|296168206|ref|ZP_06850198.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum
            ATCC BAA-614]
 gi|295896822|gb|EFG76452.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum
            ATCC BAA-614]
          Length = 1102

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E++ +  + EG  + +IA  L IS  TV +++  +  K A  +R      A R+
Sbjct: 1045 LTPTELDVVRLVGEGLPNKDIAARLFISPRTVQSHLTHVYTKLAVSSRVQLAREAARH 1102


>gi|312112457|ref|YP_003990773.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217558|gb|ADP76162.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 223

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 45/110 (40%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V++      L+      +  + +  + LL        ++      K   L+  E E L  
Sbjct: 101 VSKTATSEQLITAIRCALRDEAVIPVHLLRQLHLCEVRAKMEENEKQAALSRLEQEILFE 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ +IA    IS+ +V  +++ I  K    +R  A+  A +  ++
Sbjct: 161 VANGLSNKDIAKKHYISQRSVERHLSRIFTKLHVSSRVEAVEKAKQLGLI 210


>gi|223940658|ref|ZP_03632499.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223890670|gb|EEF57190.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 217

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 15/136 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170
           V  TL          D     L   +  +  G   L P   + ++ D L  I        
Sbjct: 92  VLQTLRAGAAGYLLKDAATAELELAIQAVSRGDTYLSPAISKRVIEDYLGRI-------- 143

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                 +       +LT R+ E L  I+EGK++ E+A +L +S  TV  +   +M +   
Sbjct: 144 ------NGQKSPMEQLTPRQREILQLIAEGKSTKEMAFLLNLSVKTVETHRTQLMDRLGI 197

Query: 231 KTRSGAIAYAVRNNIV 246
               G + YA+R  ++
Sbjct: 198 HDVPGLVRYAMRMGLI 213


>gi|158315599|ref|YP_001508107.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158111004|gb|ABW13201.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec]
          Length = 268

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  +SEG  + EI   L  S  TV N +  + R+   + RS A+AYA R+ +
Sbjct: 208 LSERELTVLRLVSEGLDTREIGRRLCYSERTVKNVLQDVTRRFGLRNRSHAVAYAFRHGL 267

Query: 246 V 246
           +
Sbjct: 268 L 268


>gi|157144856|ref|YP_001452175.1| transcriptional regulator NarP [Citrobacter koseri ATCC BAA-895]
 gi|157082061|gb|ABV11739.1| hypothetical protein CKO_00584 [Citrobacter koseri ATCC BAA-895]
          Length = 215

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A  
Sbjct: 154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATI 206


>gi|330876658|gb|EGH10807.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 220

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 1/139 (0%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +     HT P+ +        R   L    A      +         L   +    +  A
Sbjct: 79  VLILSMHTDPDMVARALDAGARGYLLKDTTATELEQALEALRNDERYLSPAIAHTVVERA 138

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                 +       + + LT R++E L  I  GK++ EIA  LG+S  TV  + + IM++
Sbjct: 139 VHGTRAERA-RAARERYNLTARQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKR 197

Query: 228 TATKTRSGAIAYAVRNNIV 246
                 +G + + VR  I+
Sbjct: 198 LQIFDVAGLVLFCVRERII 216


>gi|293394905|ref|ZP_06639195.1| response regulator protein [Serratia odorifera DSM 4582]
 gi|291422656|gb|EFE95895.1| response regulator protein [Serratia odorifera DSM 4582]
          Length = 210

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKD--------FELTGREVECLTWISEGKTSDEIA 207
              L+   + A  +   +   D     D        F LT R++E LT +  G  + +IA
Sbjct: 110 PPELFSQAVFALLENRTWFPEDNATVADNSKNPLQQFNLTSRQLEVLTMMMRGFPNKKIA 169

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + L IS  TV  +I++I++K    +R  AI
Sbjct: 170 LQLAISEPTVKEHISNILKKIGVNSRVEAI 199


>gi|284032378|ref|YP_003382309.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811671|gb|ADB33510.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 215

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 75/214 (35%), Gaps = 7/214 (3%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L      +       +      E VG +       +L Q+ + D  +  D    L+  +A
Sbjct: 7   LADDQAMVRAGFRLILEREPDFEIVGEAEDGKRAVELAQQLRPDVTLM-DIRMPLMDGLA 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +        +  P  +       L E +        R   L     R     +L+    
Sbjct: 66  ATRVLA-GQGVAHPLRVLIVTTFDLDELVHEALRSGARGFLLKDAGPR-----LLVEAVH 119

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                + L    +     A+   +          LT RE++ +  ++ G+T+ EI+  L 
Sbjct: 120 AAANGESLVSPSITTRLLAHFSTTSGHVRSPRPALTDRELDAVKAVARGRTNAEISAELM 179

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IS +TV +++AS+ RK A + R+    +A    +
Sbjct: 180 ISLSTVKSHLASVQRKIAARNRTEIAVWAWEYGL 213


>gi|262199427|ref|YP_003270636.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262082774|gb|ACY18743.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM
           14365]
          Length = 394

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           F LT RE E   WIS GK++ +IA IL I   TV  +   I  K   + R+  +
Sbjct: 320 FRLTPREAEVALWISRGKSNQDIATILSIRPGTVKKHAERIFMKLGVENRASVV 373


>gi|153807354|ref|ZP_01960022.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185]
 gi|149129716|gb|EDM20928.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185]
          Length = 200

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 34/80 (42%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y                 L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  
Sbjct: 116 GYPVKDMPPMIPAEHPQVLLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITE 175

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ SG   YAV N  +
Sbjct: 176 KLGIKSVSGLTIYAVMNGYI 195


>gi|8708904|gb|AAF78795.1| putative two-component system transcriptional response regulator
           TcsR [Bradyrhizobium japonicum]
          Length = 223

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +    F V  +R  ++ +      +  D      L AA   +M +  D    +   L
Sbjct: 103 ASGFIPKRFGVESVRDAILKVMEGDVWVPAD----TDLSAATDPDMTRLRD----RLVTL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A R
Sbjct: 155 TPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAR 210


>gi|124268421|ref|YP_001022425.1| response regulator [Methylibium petroleiphilum PM1]
 gi|124261196|gb|ABM96190.1| response regulator [Methylibium petroleiphilum PM1]
          Length = 219

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 1/153 (0%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGR 152
           E        Q   +      H   +++ P        Y        ++   L  +     
Sbjct: 64  EVVAALREAQPEAQSVVVTIHDDDDHLFPALQAGAFGYLLKEQSREQLADQLRRISAGEP 123

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +       +    A Q                LT RE E L  +++G T  EI V L +
Sbjct: 124 PLSPSIARRVIQYFAAQQRSQFREKTPLMPGVTLTERENEVLLRVAKGFTLPEIGVQLNL 183

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           SR+T+ +Y+  I RK    +R+     A R  +
Sbjct: 184 SRHTIADYVKQIYRKLNVSSRAEVALEAQRLGL 216


>gi|319648196|ref|ZP_08002413.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2]
 gi|317389831|gb|EFV70641.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2]
          Length = 213

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGAS----HFLLVRWDLF--QEQKLDSIVSSDWPFD 85
           L+ R++ +D     T  M  + +         H      DL   QE  +D +   D    
Sbjct: 3   LMIRVLLVDDYRVLTSGMKEILKKYNMDVIVCHEGNEALDLLKNQEVHID-VFLYDLKMP 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  + LS K        +   +F         N    AG+   +   ++  + I   ++
Sbjct: 62  GMNGLELSLKTLEIEPQSKIIIMFSGDEIHSYFNKLIEAGVK-GFIDKSYTDSMIASSIL 120

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L      +     L ++ L            D     D  LT  E++ L  ++ GKT+ E
Sbjct: 121 LCLKGDVLFPDGLLQKLRL------------DSDLSVDEHLTDTELDILQKVASGKTNKE 168

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S   V  +++ I +K    +R  A+      N++
Sbjct: 169 IAADLQMSTRNVEYHLSKIYKKLKVTSRYCAVKKGTMLNLI 209


>gi|83648198|ref|YP_436633.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636241|gb|ABC32208.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 201

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           GLLA  +  +      H  +    + R +E L ++++G ++ EIA  LGIS  TV  Y++
Sbjct: 117 GLLAILRGELVTVTQCH-DQLPSFSPRHLETLEYLTQGLSNKEIAKNLGISDITVRQYVS 175

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+     + R+ A+  A +  I+
Sbjct: 176 DIIDHLGVENRTQAVMAAKKRGII 199


>gi|313835112|gb|EFS72826.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314929089|gb|EFS92920.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970815|gb|EFT14913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328905840|gb|EGG25616.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 218

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 11/177 (6%)

Query: 78  VSSDWPFDL-VRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           V    P D+ +  + + + D       +   P +    +  T   +    A +       
Sbjct: 45  VLRRMPVDVALMDIRMPQMDGVEATRRITASPLDTKVLILTTFDLDEYVYAALKAGASGF 104

Query: 134 TFDVAR---IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGR 189
               AR   +   +  +     ++          L  +      +      K    LT R
Sbjct: 105 LLKDARPTELLSAIRNVADGNAVVAPSATRR---LLDHVVPTLPNDPKAADKRLSVLTDR 161

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    ++
Sbjct: 162 EQEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLI 218


>gi|218462212|ref|ZP_03502303.1| probable two-component response regulator protein [Rhizobium etli
           Kim 5]
          Length = 180

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M  S          LT RE E +  +++G ++  I + L +   TV +++  I+ K    
Sbjct: 108 MENSLHDSASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVS 167

Query: 232 TRSGAI 237
            R+ A 
Sbjct: 168 NRTEAA 173


>gi|170781840|ref|YP_001710172.1| LuxR family transcriptional regulator [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156408|emb|CAQ01556.1| putative LuxR-family transcriptional regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 460

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  +    +  L+ RE E L  ++ G  +  IA  LGIS NTV  ++A+++RK    TR
Sbjct: 392 PAAGLDAAGEAGLSAREREVLALVAGGSRNRAIATSLGISENTVKFHVANLLRKMGASTR 451

Query: 234 SGAI 237
           +   
Sbjct: 452 AELA 455


>gi|322377555|ref|ZP_08052045.1| DNA-binding response regulator [Streptococcus sp. M334]
 gi|321281320|gb|EFX58330.1| DNA-binding response regulator [Streptococcus sp. M334]
          Length = 199

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|170726233|ref|YP_001760259.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169811580|gb|ACA86164.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 210

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           R   L  P        I P       +C    D     +G +L   +G+ ++   L E  
Sbjct: 78  RVVFLHFPRQIDARFLIHPTVTAGVFFCDAALDAIGHGLGNIL---RGQSVIPAELSE-- 132

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                     +           LT RE E L  +  G T+ +IA  L +S +T+  ++  
Sbjct: 133 --------QKQDNQSQVEGSESLTIREREVLQALLSGSTNVDIANQLFVSESTIKTHLYR 184

Query: 224 IMRKTATKTRSGAIAYA 240
             RK    +R  AIA+A
Sbjct: 185 AFRKIGVSSRGQAIAWA 201


>gi|326330507|ref|ZP_08196815.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325951782|gb|EGD43814.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 226

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 45/142 (31%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +    F                +         +   +  +     ++       +  
Sbjct: 83  PRVIVLTTFDLDEYAFAAIRAGAAAFLLKDARPEDLLTAIRTVHAGDSVVAPSTTRRLLE 142

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             A  A    +      +   LT RE E LT +  G ++ EIA    ++  TV  ++  +
Sbjct: 143 HFAASAPSTSTPAAAEQRLAVLTEREREVLTLVGRGLSNTEIAETFVVAEATVKTHVGRL 202

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + KT ++ R   +  A    +V
Sbjct: 203 LAKTGSRDRVQLVVLAYETGLV 224


>gi|285808481|gb|ADC36005.1| transcriptional regulator NarL [uncultured bacterium 259]
          Length = 228

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 4/162 (2%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFD 136
           SD P  L+    L    ++     R  +    +F   P++   +        R       
Sbjct: 46  SDPPDILLVDSRLPNPLRFCAS-ARDQDRPLVIFLVAPDDDEWMLQAIAAGARGIVAKDA 104

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
                I  +    + +I    R+    LL   +A++ +        +  L+ RE E L  
Sbjct: 105 PPSDIIRAVTAVREDQIWAPRRILGTALLNHQRASLARDRHPEALLEQRLSIREREVLRN 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ++ G ++ E+A  LGI   TV  ++ +I +K   ++R    A
Sbjct: 165 MAAGLSNKEVADRLGIRPATVKVHLMNIFQKLGMRSRGELAA 206


>gi|307707707|ref|ZP_07644186.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
 gi|307616205|gb|EFN95399.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
          Length = 199

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|238061732|ref|ZP_04606441.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883543|gb|EEP72371.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 221

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D     L   V     G  L+ P   + L      +   A     
Sbjct: 94  VYGALRAGARGFLLKDAGPELLVQAVRSAADGQALIAPSVTVRL------LQAFADVPVG 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +  V       +T RE + L  ++ G T+ EIA  L IS +TV  ++AS+M K   +
Sbjct: 148 RPMTQPV-----VPVTAREEDVLIAVARGLTNVEIADALHISLSTVKTHLASLMGKLGVR 202

Query: 232 TRSGAIAYAVRNNIV 246
            R     +A     +
Sbjct: 203 NRVEIAMWAYETRRI 217


>gi|134098555|ref|YP_001104216.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291003228|ref|ZP_06561201.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133911178|emb|CAM01291.1| protein kinase/transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 777

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 5/151 (3%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--- 150
           E   +             +F           G    Y S          G+         
Sbjct: 617 ETLAWVEATLGRHGRAATLFGLAASVWESLGGSPEFYSSFAHAHHAHVAGVREALGDSAY 676

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVH--WGKDFELTGREVECLTWISEGKTSDEIAV 208
            +   +           +     +  D     G+   LT RE +    ++EG T+ +IA 
Sbjct: 677 EQAFEQGHRLSAAQAVDFALETERPRDARQPTGEQPLLTRREFQIAELVAEGLTNRDIAA 736

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L IS  T   ++ +I+ K    +R+   A+
Sbjct: 737 RLVISTRTAEGHVENILTKLGFSSRTQIAAW 767


>gi|116694520|ref|YP_728731.1| response regulator [Ralstonia eutropha H16]
 gi|113529019|emb|CAJ95366.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 219

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I+ G T+ +IA  L IS  T   +  ++MRK      +  +AYA R  I
Sbjct: 149 LTRRELQILMLIARGATAGDIAAQLDISPLTARKHRENLMRKLDLHNTAEVVAYAARQGI 208


>gi|94500129|ref|ZP_01306663.1| regulatory protein, LuxR [Oceanobacter sp. RED65]
 gi|94427702|gb|EAT12678.1| regulatory protein, LuxR [Oceanobacter sp. RED65]
          Length = 753

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
            L   +    I +  L P  + +   R       A    ++   Y+       ELT +E 
Sbjct: 643 PLIIPILSNLISMGELQPSKQYLSTYRNILFPRYATDADDITARYN-------ELTNKEK 695

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E L  +++G ++ EIA  + ++  T+  ++ +I RK +  +RS A+AY
Sbjct: 696 EVLMLLAQGLSNQEIADDMAVAATTIKWHLKNIYRKLSLDSRSAAVAY 743


>gi|33865919|ref|NP_897478.1| DNA-binding response regulator [Synechococcus sp. WH 8102]
 gi|33633089|emb|CAE07900.1| possible DNA-binding response regulator [Synechococcus sp. WH 8102]
          Length = 235

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE++    ++ G  S+ IA +LGIS  TV  ++ + M K   + R+     A+   
Sbjct: 170 ELTQRELDVAAAVARGLKSNAIADLLGISLETVKTHVGNAMDKLGARDRTQMAVTALLYG 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|307325089|ref|ZP_07604293.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889235|gb|EFN20217.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 222

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 3/162 (1%)

Query: 87  VRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR   +   +    + +   R + L    F              + +         +  G
Sbjct: 55  VRMPGMDGIEATRRIAETGGRSSVLVLTTFDVDEYVHAALRAGASGFLLKDARPEELLAG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I       I    A      +       +   LT RE E L  I +G T+
Sbjct: 115 IHAVAGGDAVIAPALTRRILDEYARHVPARRGDPGEDPRVASLTEREREILVAIGKGWTN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA    ++ +TV  ++  ++ K   + R  A+ +A    +
Sbjct: 175 GEIAARFVVAESTVKTHVGRVLAKIGARDRIQAVIFAYDRGL 216


>gi|261821966|ref|YP_003260072.1| transcriptional regulator NarP [Pectobacterium wasabiae WPP163]
 gi|261605979|gb|ACX88465.1| two component transcriptional regulator, LuxR family
           [Pectobacterium wasabiae WPP163]
          Length = 210

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 18/194 (9%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           L+V       + +  ++++D  FD++   +   +         P   L       L    
Sbjct: 10  LIVDDHPLMRRGIRQLLATDAIFDVIGEASNGMEALSLANRDSPDIILLDLNMKGLSGLD 69

Query: 121 TPPAGMDNRYCS----LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           T  A   +  C+    LT   A   I  ++       +L+D   E  LL A +++   S 
Sbjct: 70  TLHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPE-HLLDAIRSSDAFSE 128

Query: 177 DVH------------WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            V                   LT RE++ L  ++ G ++ +IA +L IS  TV  +I ++
Sbjct: 129 QVRDVLRHRIAIKETPSPFTVLTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNM 188

Query: 225 MRKTATKTRSGAIA 238
           +RK   ++R  A  
Sbjct: 189 LRKLNVRSRVAATV 202


>gi|256826810|ref|YP_003150769.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582953|gb|ACU94087.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 470

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             G++  LT REVE L  +  G++ + IA  L IS NTV ++   I RK    +R  A
Sbjct: 407 RIGRERGLTEREVEVLELLCRGRSKNYIADTLFISENTVRSHARHIYRKLDVHSRQEA 464


>gi|154245397|ref|YP_001416355.1| two component LuxR family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154159482|gb|ABS66698.1| two component transcriptional regulator, LuxR family [Xanthobacter
           autotrophicus Py2]
          Length = 224

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 15/172 (8%)

Query: 74  LDSIVSSDWPFDLVR-CMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITP-----PAGM 126
           L +++  D  FDL+   + +     +  ++  R      PV        T          
Sbjct: 46  LTALLERDRDFDLILLDLTMPGARGFSGLIYLRAQYTSLPVVVVSGNEETAVIRRCIDLG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +   T  VA +R  +  +      +  D         +  A      D    +   L
Sbjct: 106 ASGFIPKTMSVADMRDAVASVLGGEAFVPSDI--------SLGARADAETDAIIARLATL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           T ++V  L  +SEG+ + +IA  L +S  TV  ++++I++K   ++R+ A+ 
Sbjct: 158 TPQQVRVLMMLSEGRLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVI 209


>gi|158313275|ref|YP_001505783.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158108680|gb|ABW10877.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 218

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 37/81 (45%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A      F S         ELT RE E L+ ++ G  +  IA  L ++  TV N +++I
Sbjct: 135 VAHRVLRTFTSPPAENAPFPELTEREREVLSLLANGWPNSRIARHLQLTPKTVANNVSNI 194

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           + K     R+ AI  A R  +
Sbjct: 195 LAKLHAPDRTAAILRARRAGL 215


>gi|254883648|ref|ZP_05256358.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294775634|ref|ZP_06741143.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|319642280|ref|ZP_07996939.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|254836441|gb|EET16750.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294450576|gb|EFG19067.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|317386136|gb|EFV67056.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 216

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 30/62 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E E L  ++ GKT+ EIA    +S  TV  +  +I RK        A  YA+R  
Sbjct: 148 PLTVTEREILKLMALGKTTKEIAAERFLSVYTVMTHRKNIFRKLEVNNVHEATKYALRAG 207

Query: 245 IV 246
           IV
Sbjct: 208 IV 209


>gi|269954904|ref|YP_003324693.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303585|gb|ACZ29135.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 220

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 69/216 (31%), Gaps = 10/216 (4%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKLDSIVSSDWPFDLVRCMAL 92
           R++  D           L +      F++V    D  +  +L    + D     V+   L
Sbjct: 7   RVLLADDDARLRSVYRKLLDRTE--GFVVVAETGDGAEAVRLARERTPDVALLDVQMPGL 64

Query: 93  SEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           S  D    +L   +   +    F              + +       A +   +  +   
Sbjct: 65  SGLDAARAILAGGQVRVVMLTTFDLDEYVHDALTAGVSGFLLKNATPAEVLAAVRSVHAG 124

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++  +    +           +    H      L+ REV+ +  ++ G+++ +IA  L
Sbjct: 125 HALLAPEVTGRL----IRHLAPPRPDHPHPFVGKVLSQREVDVVRLVALGRSNQQIADEL 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  TV  Y+  +  K     R+     A R  ++
Sbjct: 181 VLSLETVRTYLRRMFAKLDVNDRTQLAVLAYRAGLL 216


>gi|182435952|ref|YP_001823671.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464468|dbj|BAG18988.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 220

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 5/168 (2%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRYCSLTFDV 137
           P  ++  + +   D      Q   E    V      ++            + +     D 
Sbjct: 49  PDLVLMDVQMPRLDGVAATRQVVGEELADVLVLTTFDLDEYVFGALRAGASGFLLKNTDA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     +I       +    A  +               LT RE E L  +
Sbjct: 109 RDLLEAVRTVARGEGLIAPAVTRRLIAEFAGASPRHGRRTADPAVLDALTRREREVLGCL 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++ EIA+ L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 169 GEGLSNAEIALRLAMAEATVKTHVSRVLGKLELRSRVQAAVLAQELGI 216


>gi|29654109|ref|NP_819801.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA
           493]
 gi|153208494|ref|ZP_01946778.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154707387|ref|YP_001424215.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|212218270|ref|YP_002305057.1| response regulator [Coxiella burnetii CbuK_Q154]
 gi|29541375|gb|AAO90315.1| response regulator [Coxiella burnetii RSA 493]
 gi|120575950|gb|EAX32574.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154356673|gb|ABS78135.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|212012532|gb|ACJ19912.1| response regulator [Coxiella burnetii CbuK_Q154]
          Length = 216

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 12/159 (7%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
             +  +    +L+R  E+   V   +   + P   +D     + + + D   +   +  +
Sbjct: 59  DTNGLELARKLLRRDPEIKILVVTAMEGELLPMRLLDVGVRGFITKSSDSGELERAIRAV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R I       + L                    +L+ R++E L  +++G  ++EIA
Sbjct: 119 HSGQRYISSAIASRLAL---------SKTTPTKSPFDQLSHRQMEVLLLLAKGMKAEEIA 169

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L I+  TVN++   +  K   K     I  AV+  ++
Sbjct: 170 KQLHITAKTVNSHRYRMFDKLGVKNDVELIKLAVQYGVI 208


>gi|331010621|gb|EGH90677.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 87

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT +E + L W++ GK++ EI+ I G +  TV+ + ++I RK    +   A+  A+R 
Sbjct: 22  VQLTVKERQVLEWVAIGKSAWEISRIQGCTEATVHFHTSNIRRKFGVTSLKAALVMAIRQ 81

Query: 244 NIV 246
            ++
Sbjct: 82  GVI 84


>gi|319440533|ref|ZP_07989689.1| putative transcription regulator [Corynebacterium variabile DSM
           44702]
          Length = 146

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 30/151 (19%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--- 174
           + I    G    Y +   D+A +   +  +     +           LA Y  + F    
Sbjct: 2   DVIALIRGGARGYVTKNIDIAELAEAVRRMGEGDAVFSP-------RLAGYVLDAFAAGG 54

Query: 175 ------------------SYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214
                             ++D   G     +LT REVE +  ++ G T  E+A  L IS 
Sbjct: 55  ASAGTGTPGHGAGTTSGDNHDEDAGSPLIDDLTPREVEVMRLLARGYTYREMAKRLFISV 114

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            TV  +++ ++RKT    R     +   N +
Sbjct: 115 KTVETHVSHVLRKTQQTNRHQLSRWVSDNRL 145


>gi|318059884|ref|ZP_07978607.1| response regulator [Streptomyces sp. SA3_actG]
 gi|318081229|ref|ZP_07988561.1| response regulator [Streptomyces sp. SA3_actF]
          Length = 199

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G L +    + +      G    L  RE + L  ++EG  + EIA  L  S  TV N +
Sbjct: 115 LGRLISQVGTLHRGNGAAGGTTLGLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVM 174

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             +  +   + R+ A+AYA+R   +
Sbjct: 175 HGLTTRLHLRNRAHAVAYALRQGYI 199


>gi|298244512|ref|ZP_06968318.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297551993|gb|EFH85858.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1045

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%)

Query: 130  YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
            + +    +AR+   L+    +  +    ++    L  +                  L+ +
Sbjct: 929  FLAEGAPLARLLRSLLPGIHEKTLRFFGQMLLRALTISGGEGALLPSPFEQQPFEPLSPQ 988

Query: 190  EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            E   L ++  G T+ EIA  L IS NTV +++  + RK     R  A
Sbjct: 989  EQRVLQFLVAGHTNQEIAKELVISVNTVKDHVKHLYRKLGVSNRLQA 1035


>gi|255009756|ref|ZP_05281882.1| LuxR family transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313147543|ref|ZP_07809736.1| luxR family transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313136310|gb|EFR53670.1| luxR family transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 200

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 127 DNRYCSLTFDVARIRIG---LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             +   L  D  + ++    ++ ++     +++D L    L      + +   D+     
Sbjct: 72  KRKTIVLAGDSHQFQLSGVPILNIYQTEEGLVKDIL---KLHQHAHHDGYPVKDMPPASP 128

Query: 184 ----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                EL+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   Y
Sbjct: 129 AATGHELSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIY 188

Query: 240 AVRNNIV 246
           AV N  V
Sbjct: 189 AVMNGYV 195


>gi|227111773|ref|ZP_03825429.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 18/194 (9%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           L+V       + +  ++++D  FD++   +   +         P   L       L    
Sbjct: 10  LIVDDHPLMRRGIRQLLATDAIFDVIGEASNGMEALSLANRDSPDIILLDLNMKGLSGLD 69

Query: 121 TPPAGMDNRYCS----LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           T  A   +  C+    LT   A   I  ++       +L+D   E  LL A + +   S 
Sbjct: 70  TLHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPE-HLLDAIRNDDAFSE 128

Query: 177 DVHW------------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            V                   LT RE++ L  ++ G ++ +IA +L IS  TV  +I ++
Sbjct: 129 QVREVLRHRIAIQDTPSPFTVLTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNM 188

Query: 225 MRKTATKTRSGAIA 238
           +RK   ++R  A  
Sbjct: 189 LRKLNVRSRVAATV 202


>gi|254387494|ref|ZP_05002733.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064]
 gi|294815121|ref|ZP_06773764.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443484|ref|ZP_08218218.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701220|gb|EDY47032.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327720|gb|EFG09363.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 230

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 5/168 (2%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRYCSLTFDV 137
           P  ++  + +   D      Q   +    V      ++            + +     + 
Sbjct: 63  PDLVLMDVQMPRLDGVSATRQIVADSLADVLVLTTFDLDEYIFGALRAGASGFLLKNTEA 122

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +     +I       +    A    +             LT RE E L+ +
Sbjct: 123 ADLLAAVRTVARGEGLIAPAVTRRLIAEFAAPRRVRGPGGPDPSVLDVLTRREREVLSAV 182

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++ EIAV L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 183 GEGLSNAEIAVRLSMAEATVKTHVSRLLNKLELRSRVQAAVLAQELGI 230


>gi|126736492|ref|ZP_01752233.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. CCS2]
 gi|126714030|gb|EBA10900.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. CCS2]
          Length = 254

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 15/157 (9%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--PPAGMDNRYCSLTFDVARIRIGLML 146
            M ++  D      +R  E    +  T    ++    +       +LT      +  +  
Sbjct: 96  MMDMNRVDNLTASERRVMEFNKSMDVTAGYTVSFRSISERTKGAIALTAKAGMTQDAVEQ 155

Query: 147 LFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            + K    II+ + +  + LL            + +  +  LT R+ E L W+ +GKT+ 
Sbjct: 156 TWTKHGEEIIVLNNVMHLKLLT-----------LPYSGERNLTKRQREVLQWVGDGKTTQ 204

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +IA++LG++  TV  ++         +T + A+  A 
Sbjct: 205 DIALLLGLTPATVEKHLRLAREALDVETTAQAVLKAA 241


>gi|304406021|ref|ZP_07387679.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345264|gb|EFM11100.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 201

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 19/154 (12%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L   +  +E+ K   +      +    F              + Y         +   
Sbjct: 57  MPLKNGLDAAEELKAMGL--DCKVVILTTFARAGYFERAIKACVHGYLLKDSPSEELASS 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++    R+   + +                 D  +G++  LT RE   L  I++GK++
Sbjct: 115 IRIIAGGRRLYAPELM-----------------DEAYGEENPLTEREKAVLVLIADGKST 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            EI+  L I+  T+ NYI+ I+ K     R  AI
Sbjct: 158 KEISKELFITTGTIRNYISVILNKLGVGNRVEAI 191


>gi|302036473|ref|YP_003796795.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604537|emb|CBK40869.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 4/180 (2%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPT-ELFCPVFHTLPE 118
           L+V  +    ++   +  +  P  ++  + +   D      +++    E    +     +
Sbjct: 28  LIVVGEAMDGRQAFDLAVAHKPGIVLMDVDMPRLDGITATRLIRSCVPESKVLMLSVHDD 87

Query: 119 NITPPAGMDNRYCSLTF-DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +    A +    C     D        ++        +R      G      A + K  +
Sbjct: 88  DARIVAAVQAGACGYILKDADHQEFLRIIRATDKGEPVRSPFMPDGFAKQAVALVNKQEE 147

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  G    LT RE E L   + G+++ EIA  L +S +TV  ++  I +K     R  A+
Sbjct: 148 LSGGGLSLLTDREHEMLACAAAGRSNKEIADQLCVSLDTVKTHLHHIYQKLRVSGRVEAV 207


>gi|296104643|ref|YP_003614789.1| two component LuxR family transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059102|gb|ADF63840.1| two component LuxR family transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +S +    K F LT R+++ L  I  G  +  IA  L IS  TV  +I++I++K    +
Sbjct: 136 VESNNEKLSK-FNLTPRQIDVLNMIMRGLPNKRIAAQLSISEPTVKEHISNILKKIGVNS 194

Query: 233 RSGAI 237
           R  AI
Sbjct: 195 RVEAI 199


>gi|289444014|ref|ZP_06433758.1| probable transcriptional regulatory protein [Mycobacterium
           tuberculosis T46]
 gi|308369731|ref|ZP_07666793.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu002]
 gi|289416933|gb|EFD14173.1| probable transcriptional regulatory protein [Mycobacterium
           tuberculosis T46]
 gi|308326618|gb|EFP15469.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu002]
          Length = 282

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 215 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 273


>gi|317128969|ref|YP_004095251.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315473917|gb|ADU30520.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 199

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++A  +    +  D  + +   LT RE E L  +++GK++ EIA IL ++  TV NYI+
Sbjct: 115 SVMAGRRIYASELVDEVYSESNPLTEREREVLVHMADGKSTKEIANILHLTNGTVRNYIS 174

Query: 223 SIMRKTATKTRSGAIAY 239
           +I+ K     R  AI  
Sbjct: 175 TILDKLEVGNRIEAITK 191


>gi|189461728|ref|ZP_03010513.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136]
 gi|189431488|gb|EDV00473.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136]
          Length = 215

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 73/219 (33%), Gaps = 23/219 (10%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             + R+      +     + ++ E VG      +L  +        DS+V  D+      
Sbjct: 10  QAITRLGVKYLALEAGRELSSIKEAVGLQELSMMLSSYP-------DSVVIIDY-----T 57

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
               +    +    + P  +F      L E+      +     SL F  + +        
Sbjct: 58  LFDCTADQLWILKERFPQSVFVLFSDALSESFIRRMVLGGIQFSLLFKDSDV-------- 109

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIA 207
            +    L +       +     +     +     D  +LT  E E L  ++ GKT+ EIA
Sbjct: 110 HEVAACLDEAEQGRQYICMKAKSWLYEKERDAVSDMPQLTMTEKEVLRSLTLGKTTKEIA 169

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               +S  TV  +  +I RK        AI YA+R  IV
Sbjct: 170 AERFLSVYTVMTHRKNIFRKLNVNNAQEAIRYALRAGIV 208


>gi|34540945|ref|NP_905424.1| LuxR family transcriptional regulator [Porphyromonas gingivalis
           W83]
 gi|34397260|gb|AAQ66323.1| transcriptional regulator, LuxR family [Porphyromonas gingivalis
           W83]
          Length = 199

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 44/104 (42%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
             ML      + +   + E+  L           +    +   LT RE E +  + +G T
Sbjct: 89  SNMLHNYDDTLSVHATVEELKQLLERLYQKTLEPEESGEEQQTLTNREKEIVVGVVKGMT 148

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S +TV  +  +I +K    + SG   YA+ N +V
Sbjct: 149 NKEIAEELFLSTHTVITHRRNIAKKLQIHSPSGLTIYAIMNKLV 192


>gi|328885076|emb|CCA58315.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 217

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 81/221 (36%), Gaps = 11/221 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++  +   +    +  +   +G++  + V  +    ++  ++     P  ++  + 
Sbjct: 1   MTVRVVVAEDQSAVRAGLVLI---LGSAPDIEVVGEAADGERAVALARELRPDLVLMDVQ 57

Query: 92  LSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           +   D          +   ++       L E +            L    AR  I  +  
Sbjct: 58  MPRMDGVTATGIVTSEGLADVLVLTTFDLDEYVFGALRAGASGFLLKNADARELIEAVRT 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSD 204
             +G  ++   +    L+A + A    +        G    LT RE + L+ + EG ++ 
Sbjct: 118 VARGEGLIAPAVTRR-LIAEFAAPSRPARPAGGTDPGVLDALTPRERQVLSKLGEGLSNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIAV L ++  TV  +++ ++ K   ++R  A   A    +
Sbjct: 177 EIAVRLDMAEATVKTHVSKVLGKLELRSRVQAAVLAQELGV 217


>gi|315038871|ref|YP_004032439.1| two-component system response regulator [Lactobacillus amylovorus
           GRL 1112]
 gi|312277004|gb|ADQ59644.1| two-component system response regulator [Lactobacillus amylovorus
           GRL 1112]
          Length = 227

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 68/171 (39%), Gaps = 6/171 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           ++ + P  ++  + +   D       V ++  ++   +  T  ++    + +    + Y 
Sbjct: 43  IAKNKPDIILMDVRMPVMDGTVCTKYVKEKYPDVKVIILTTFDDDDFIFSALKYGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   +  ++  G +I  +   ++  L +  A    S  V   +   L+  E 
Sbjct: 103 LKGGSPQDIFQAIRTVYAGGAMINPNITEKVFKLFSKMAQTNYSISVDQTEIQNLSHSEW 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +  +  G ++ EIA  L +S  TV NYI+ I+ K   + R+    +AV+
Sbjct: 163 LIIQQVGFGLSNKEIAAKLFLSEGTVRNYISKILDKLQLRDRTQLAIWAVQ 213


>gi|28899484|ref|NP_799089.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308094736|ref|ZP_05891637.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308095423|ref|ZP_05905792.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308125607|ref|ZP_05776200.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|28807720|dbj|BAC60973.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308087209|gb|EFO36904.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093073|gb|EFO42768.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308111203|gb|EFO48743.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
          Length = 214

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 152 VDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|325001931|ref|ZP_08123043.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 217

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +    +           L   V  +  G  LL PK    + +RL           + 
Sbjct: 93  FGAIMAGASGYLLKQVAGVDLVGAVRTVAAGGSLLDPKATAAVLERLRR--------GDT 144

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D  +     L+ +E   L  I++G T+ +I   L ++  TV NY++SI+ K     
Sbjct: 145 ATQSDPRYE---SLSPQEQRILELIADGLTNRQIGGELHLAEKTVKNYVSSILHKLGYAR 201

Query: 233 RSGAIAYAVRNN 244
           R+ A  YAV   
Sbjct: 202 RTEAAVYAVERR 213


>gi|254449548|ref|ZP_05062985.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
 gi|198263954|gb|EDY88224.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
          Length = 204

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  ++EGK++ +IA  L I   TV  ++ ++ RK     R+ A   A    
Sbjct: 143 KLTERELQVLKGLTEGKSNKQIARDLEIQEPTVKLHMKTLYRKVGAANRTQAAMIAREAG 202

Query: 245 I 245
           +
Sbjct: 203 L 203


>gi|148273924|ref|YP_001223485.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831854|emb|CAN02824.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 206

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 36/67 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE+E L  +++G ++ ++A  L I+  TV +++  +  K    +R+GA+A 
Sbjct: 139 RAPRVSLSSREIEVLRLVADGASNTDVAARLHITDATVKSHLVHVFSKLGVSSRTGAVAA 198

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 199 ARELGVL 205


>gi|327313695|ref|YP_004329132.1| hemerythrin HHE cation binding domain-containing protein
           [Prevotella denticola F0289]
 gi|326944895|gb|AEA20780.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           F0289]
          Length = 318

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 81/214 (37%), Gaps = 11/214 (5%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
             LD T +    +  L +        +     ++E+ +   V +    +      +    
Sbjct: 105 AALDETDNLARLILRLFDEYAHD---IRNHMKYEEKMVFPYVEAMLKGEASDAYDIETYS 161

Query: 97  KYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           K+++    +  EL   +   LP +       +NR  +  +D+      L L       I 
Sbjct: 162 KHHSQTDLKLRELKSIIIKYLPSDAHH----NNRLTATLYDIYNCEGWLTLHAEVEEEIF 217

Query: 156 RDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
              +  +      +    K  ++       +  L+ RE + +  +++G T+ EIA  L I
Sbjct: 218 IPVIRRLEQKTQQKDVSLKITNMITQSPDSNEVLSDREKDVIVAVAQGMTNKEIADHLCI 277

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S NTV  +  +I RK    + +G   YA+ NN+V
Sbjct: 278 STNTVITHRRNIARKLQIHSPAGLTIYAIVNNLV 311


>gi|312960767|ref|ZP_07775272.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284425|gb|EFQ63001.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 206

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A +F+  DV      +LT R+ E    I++GKT+ EIA  L IS  TV  +++S++R   
Sbjct: 134 APLFEGNDVMG----KLTSRQREVWRLIAQGKTNKEIAAELEISPYTVRIHVSSLIRVLN 189

Query: 230 TKTRS-GAIAYAVR 242
              R+  A  +A R
Sbjct: 190 VPNRAVAAARFAGR 203


>gi|300782196|ref|YP_003762487.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
 gi|299791710|gb|ADJ42085.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
          Length = 969

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S     G   EL+ RE E    ++EG+T+ EIA  L +S  TV  ++A ++RK   ++R
Sbjct: 893 PSQRGRRGYGSELSPREREVARMLAEGRTNREIADGLFLSPRTVEQHVAKVLRKLGARSR 952

Query: 234 SGAIAY 239
           +     
Sbjct: 953 TDVARK 958


>gi|258625963|ref|ZP_05720829.1| Glycerol metabolism activator [Vibrio mimicus VM603]
 gi|258581754|gb|EEW06637.1| Glycerol metabolism activator [Vibrio mimicus VM603]
          Length = 222

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 7/161 (4%)

Query: 86  LVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVAR 139
           L+  + +        +L+ R      PV     E+     +   A     Y + +    +
Sbjct: 52  LLLDLNMPGMTGLSGLLELRNVAPTTPVAVISAESDKQTVLQTLAYGAVGYVAKSCARQQ 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +      +      +  D L E  +      ++             LT ++++ L  +S+
Sbjct: 112 MGEAFAQILRGDVYLPADILREN-VKTPPNHSLRNQAGFSAETLQTLTRKQLQVLQSMSK 170

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G  + +IA  L IS  TV +++++I++K     R  A+  A
Sbjct: 171 GSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAVLGA 211


>gi|116071221|ref|ZP_01468490.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116066626|gb|EAU72383.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 239

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 19/120 (15%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQA-------------------NMFKSYDVHWGKDFEL 186
           +      +  R+RL + G+L+  QA                       S+ +       L
Sbjct: 105 IASGCEGLCSRERLGDGGVLSVLQAMDSDGIHMDPTITGVCQQSRRRPSHGIAPPLSDVL 164

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  +  G ++ EIA  L ++ +T+ + + S++RK   + R+ A+  A ++N+V
Sbjct: 165 TLREEDVLRGLCRGLSNQEIADQLHLAVDTIKHAVTSLLRKLEARDRTQAVLVAFQHNLV 224


>gi|15895522|ref|NP_348871.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025256|gb|AAK80211.1|AE007726_2 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325509670|gb|ADZ21306.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 213

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 34/229 (14%)

Query: 15  EDEQRTSF--VSHLPTRSDLLARMIPLDCTVSWTMRMYA-LTEYVGASHFLLVRWDLFQE 71
            D+Q      +  + +  D +  +   +       ++   + + +     + VR      
Sbjct: 7   ADDQVIVREGLKKILSLDDEIEVICEAEDGYDVINKLREHIVDII----LMDVRMPKMDG 62

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            K  ++V   +P   +  +   ++D+Y             +F+ +   I+     D+   
Sbjct: 63  IKTTNLVKKQYPKINIIILTTFDEDEY-------------IFNGIKSGISGYLLKDSEID 109

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGR 189
            +   V       M+  P     L + L               +      K+    LT R
Sbjct: 110 YILKSVKEAYNNKMMFDPVVTPKLVNALN------------LSNNINSTNKEILSVLTER 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           E+E    ++ GK++ EI+  L IS  TV NYI+ I++K   + R+  +A
Sbjct: 158 EMEITKLVTSGKSNKEISETLFISEGTVKNYISKILKKLKLQRRTQLLA 206


>gi|330810333|ref|YP_004354795.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378441|gb|AEA69791.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 115

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  IS G  + ++A +L IS +TV  ++ SI RK    TR+ A   A +  +
Sbjct: 54  LTGRECRILREISVGANNKQVARLLEISPSTVRTHVESIFRKLECSTRAAATFKAAKLGL 113

Query: 246 V 246
           +
Sbjct: 114 I 114


>gi|300789938|ref|YP_003770229.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299799452|gb|ADJ49827.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 192

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHW-----GKDFELTG 188
            V    +GL+       ++ R  L  +   +LAA +       +        G    LT 
Sbjct: 75  HVDPAHVGLLAECHVTAVLPRTGLDRLTANVLAAARGRSSSLREQVEALANEGGGAALTP 134

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REV+ L  ++EG  + EIA  L  S  TV N I ++  +   + R  A+AYAVR  ++
Sbjct: 135 REVDVLRLMAEGWDTAEIAGKLCYSERTVKNVIYAMTNRLNLRNRPHAVAYAVRAGVI 192


>gi|150003000|ref|YP_001297744.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|149931424|gb|ABR38122.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
          Length = 214

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 30/62 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E E L  ++ GKT+ EIA    +S  TV  +  +I RK        A  YA+R  
Sbjct: 146 PLTVTEREILKLMALGKTTKEIAAERFLSVYTVMTHRKNIFRKLEVNNVHEATKYALRAG 205

Query: 245 IV 246
           IV
Sbjct: 206 IV 207


>gi|15894152|ref|NP_347501.1| two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|15023760|gb|AAK78841.1|AE007602_2 Two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|325508280|gb|ADZ19916.1| Two-component response regulator [Clostridium acetobutylicum EA
           2018]
          Length = 218

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y     D   I  G+   F    +I  +   +I L    + N  ++ +    K ++L
Sbjct: 100 ASGYILKDSDYELIYEGIKAAFKGNVVINPEVASKI-LSENGEYNKEQALEEVKTK-YDL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +E+  +  I+ G ++ EIA  L +S  T+ N I+ I  K   + R+    +A +NNIV
Sbjct: 158 SDKEINIVREIASGLSNKEIAEKLFLSEGTIKNNISIIFSKLNLRDRTQVTIFAFKNNIV 217


>gi|116621908|ref|YP_824064.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225070|gb|ABJ83779.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 214

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 25/179 (13%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--------FCPVFHTLPENITPPAGMD 127
            +V  D    ++  +  + + K      +   L             H         +G  
Sbjct: 49  DLVVLDVSMPILNGIDAAREIKKALPAAKLIFLTMHTNAIYLRKALHAGASGYVLKSGAA 108

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
               +   +V +  I +   F +  I                    +S     G    LT
Sbjct: 109 EELLTAIEEVCKGYIYVGPDFGQDVI-----------------ESIRSTGDSQGGLPALT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+   L  ++EGK + EI  I  IS  TV  + + +M +    + +    +A++  ++
Sbjct: 152 DRQRHILQLLAEGKQNKEIGEIAHISVRTVEFHRSRLMSRLGAHSVAELTRFAIQEGLI 210


>gi|254513468|ref|ZP_05125533.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
 gi|221532472|gb|EEE35468.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
          Length = 204

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 19/175 (10%)

Query: 77  IVSSDWPFDLV----RCMALSEKDKYYNVLQR-PTELFCPVFHTLPENITPPAGMDNRYC 131
            +SS+ PFDLV        ++  D   + + + P + F  +  T P  I   A       
Sbjct: 40  TLSSEDPFDLVLLDFEMPGMNGIDGLSDAITQFPEQAFAILSGTAPNKIAQQA------- 92

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGR 189
                V    +G +      + ++    + I       A++          DF  +L+ R
Sbjct: 93  -----VEMGAVGFLPKTMGAKSLVNAVRFMIAGETFVPASVLSMDGDVEESDFSRQLSQR 147

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E + L  +  G+++ EIA  L +   T+  ++ ++ +K   K R+ A   A    
Sbjct: 148 EKQVLRGLCRGQSNKEIARALDLQEVTIKLHVRTLCKKLNAKNRTQAALIARDAG 202


>gi|184200360|ref|YP_001854567.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183580590|dbj|BAG29061.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 203

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 19/161 (11%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIG 143
           +    L+  +    ++       C +  T           D             A +   
Sbjct: 57  IEMPGLTGLEATERIVAAGRGTRCLMVTTFDRPGYLRRAFDAGASGFVVKDTPAAELAEA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++    L E  LLA                   LT RE + L   S G ++
Sbjct: 117 IRKVHAGLRVVDP-ALAEKSLLAG---------------PNPLTPREQDVLREASHGASA 160

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +I   L +S  TV N+++S + KT T  R+ A A A RN 
Sbjct: 161 GQIGRALHLSAGTVRNHLSSAIGKTGTANRTEAAAVAARNG 201


>gi|90411062|ref|ZP_01219075.1| two-component response regulator of nitrate reduction
           [Photobacterium profundum 3TCK]
 gi|90327908|gb|EAS44229.1| two-component response regulator of nitrate reduction
           [Photobacterium profundum 3TCK]
          Length = 197

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 25/183 (13%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITP-P 123
             ++L ++V    P  ++  +++        V +   +     + C   H  PE      
Sbjct: 33  DGEELIALVKKHKPDLVITDISMPGMTGIAAVARLRRDFKSVKMICLTMHDEPEYAEGAI 92

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           A   N Y         +   +  +   GR I                    S D+   K 
Sbjct: 93  AAGANGYVLKHQAGEELVKAVDTVMNGGRYISN------------------SIDMTSEKP 134

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT R++  L  + +G+++ ++A  L IS  TV  +  ++MR    KT +  I YA+ +
Sbjct: 135 T-LTARQLSVLQLLVKGRSAKQVAEELFISSRTVEFHKYAMMRLLNVKTSAELIQYAINH 193

Query: 244 NIV 246
            ++
Sbjct: 194 GLI 196


>gi|329961013|ref|ZP_08299292.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
 gi|328532299|gb|EGF59103.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
          Length = 220

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             S  ++   + +R  E    +F    + ++ P      + S+ F V         +   
Sbjct: 59  DFSGAEELIVLHERFKETDWLLFS---DELSIPFLRQVLFSSMAFGVILKDNSKEEILTA 115

Query: 151 GRIILR-DRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAV 208
            +   R +R           +    S   H   KD  LT  E   L  I+ GKT+ EIA 
Sbjct: 116 LQCTSRKERFICNHASNLLLSGRNASSPAHPAIKDNLLTPAERSILKEIALGKTTKEIAA 175

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +S +TVN++  +I RK        A  YA++  IV
Sbjct: 176 DRNLSFHTVNSHRKNIFRKLGVNNAHEATKYAMKAGIV 213


>gi|317407768|gb|EFV87695.1| hypothetical protein HMPREF0005_03216 [Achromobacter xylosoxidans
           C54]
          Length = 223

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G T  E+A  L IS  TV  +  ++MRK      +  +AYAVR  I
Sbjct: 163 LTRREQQILALIATGATGTEVARRLYISPLTVRKHRENLMRKLEVHNTAELVAYAVRLGI 222


>gi|220904084|ref|YP_002479396.1| LuxR family two component transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868383|gb|ACL48718.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 223

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGMD------ 127
           + +S  P  +V  + +   +       VL+        V+    +    P  +D      
Sbjct: 44  LAASLTPHLMVLDLGMPGMNGVETARAVLEVRPATRILVYTGHEDQRWLPELIDLGIMGH 103

Query: 128 -------NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                          +V R  I L    P GR+          LL   +  + +S     
Sbjct: 104 VRKSEPPGVLLRAIENVRRGEIFLSFSDPGGRL--------AALLRERRQAVDESGGDGC 155

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+ RE E    +++G +   IA  L IS  TV  +  +++ K    +    +  A
Sbjct: 156 GDLSALSPREKEIFRLLADGHSVKAIAGDLHISPKTVETHKYNLLTKLQAGSVGDLVKIA 215

Query: 241 VRNNIV 246
           +R+ +V
Sbjct: 216 IRHGLV 221


>gi|126732485|ref|ZP_01748284.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
 gi|126707124|gb|EBA06191.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
          Length = 235

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D    +   LT ++   L  I EGK + +IA  L I+  TV  ++ +IMRK    +R+
Sbjct: 149 EPDDALARLASLTNQQARILHLICEGKLNKQIAFDLSIAETTVKAHVTAIMRKLGVHSRT 208

Query: 235 GAIAYA 240
            A+  A
Sbjct: 209 QAVLVA 214


>gi|120554504|ref|YP_958855.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
 gi|120324353|gb|ABM18668.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
          Length = 916

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I +G  + EIA  + ++  TV  +I ++  K     R+ A+A A    
Sbjct: 849 PLSQREQEVLALIHQGLANKEIAERMSVAPATVKAHIRNLYGKLGVSRRTEALAKAREVG 908

Query: 245 IV 246
           ++
Sbjct: 909 LL 910


>gi|326802187|ref|YP_004320006.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326552951|gb|ADZ81336.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 216

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F ++    +          SL   +  +  G   + P         L    LL +   N
Sbjct: 91  IFESIRAGASGYLLKSAINHSLIKSIEELLNGGAPMTP---------LVARKLLYSIHTN 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + ++  +    ++ LT +E E L+ I  G +   +   L I+ +TV +++  I  K    
Sbjct: 142 VDQNKPMSTSINYGLTNKEREVLSCIVRGMSYKMVGHELNITYDTVRSHVKKIYEKLHVA 201

Query: 232 TRSGAIAYAVRNNIV 246
           + + A+A AV   IV
Sbjct: 202 SLTEAVAKAVSQRIV 216


>gi|320534062|ref|ZP_08034606.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133731|gb|EFW26135.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 251

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    G    LTGRE   L  + +G ++  I   L ++ +TV +++ +I+ KT  +
Sbjct: 174 AVPVVGAPSGPYEALTGREDAVLALVCQGLSNARIGERLHVAESTVKSHVKTILGKTGCR 233

Query: 232 TRSGAIAYAVRNNIV 246
            R   + YA+   +V
Sbjct: 234 NRVELVIYALTTGLV 248


>gi|253574407|ref|ZP_04851748.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251846112|gb|EES74119.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 338

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 15/127 (11%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            PV  T           +     L  +        M+L         + L ++   AA  
Sbjct: 215 LPVMLTSLLGEHNANDGEPALPGLRDEARPRGCEAMVLDGSP---APESLPKLKPEAAIY 271

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A              +LT RE E     SEG T+ +IA  L +S  T+  ++ SI +K  
Sbjct: 272 ART------------DLTHREKEVAALASEGLTNRDIASRLFLSEVTIKKHMRSIFQKVG 319

Query: 230 TKTRSGA 236
              R+  
Sbjct: 320 ASNRTQL 326


>gi|187779787|ref|ZP_02996260.1| hypothetical protein CLOSPO_03383 [Clostridium sporogenes ATCC
           15579]
 gi|187773412|gb|EDU37214.1| hypothetical protein CLOSPO_03383 [Clostridium sporogenes ATCC
           15579]
          Length = 865

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           +L+   E     F+ L E I     +DNRY           + ++      + I      
Sbjct: 725 ILEELNESRRTTFNLLREAIH--YSVDNRYLKPYVLEGEKLLNIIKKLKNDKDIELTSKE 782

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +      +  N+    +    K   LT RE E +  + EG ++ +I   L IS  TV  +
Sbjct: 783 D-----NFIKNLIDIMEPEKIKAELLTEREKEVMEILFEGASNKQIGERLNISLATVKTH 837

Query: 221 IASIMRKTATKTRSGAI 237
           + +I  K     R  A+
Sbjct: 838 MINIYSKLQVSNRVQAV 854


>gi|188584048|ref|YP_001927493.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347546|gb|ACB82958.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 215

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 21/182 (11%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP------------------VFHTLPE 118
           +V    P DL+  +    K     V  R      P                  V H   +
Sbjct: 29  VVEVSNPSDLINALRSPLKTDLVIVGSRLLPAGDPTYLAALKRAAGAVRLLLVVPHASAD 88

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                  +      L        +  +     GR+   D +  +   AA  A        
Sbjct: 89  LFQDALSLGFHGLVLRRQRHEEMLEAIRTTLDGRLYAPDAILAVKPTAAAPA---MRQPE 145

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              + F LT R+ E L  I +G ++ EIA  L I+  TV  ++++++R    + R+ A  
Sbjct: 146 RGTRTFGLTLRQREVLALIGKGLSNREIAAALSIAEATVKIHVSAVIRMLGVRNRTEAAL 205

Query: 239 YA 240
            A
Sbjct: 206 LA 207


>gi|324997312|ref|ZP_08118424.1| response regulator receiver protein [Pseudonocardia sp. P1]
          Length = 213

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 3/160 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +R   +        +   P      V  T   +      + +  C      A  R   +L
Sbjct: 56  IRMPGIDGIAATRTLAADPAPPRIVVVTTFDLDEYVYGALRSGACGFLLKDAGPR---LL 112

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +         D L    +       + +           L+ RE++ +  ++ G+T+ EI
Sbjct: 113 VEAVRAAAAGDALVSPSVTVRLLEQLTEPPPPRAEPAVALSARELDVVRAVARGRTNHEI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +S +TV  ++ +I  K   + R    A+A  N +V
Sbjct: 173 AGDLFVSLSTVKTHLTNIGSKLDARNRVEIAAWAWENRLV 212


>gi|325298413|ref|YP_004258330.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
 gi|324317966|gb|ADY35857.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
          Length = 190

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L  I  L  Y  +             +L+ RE+E L  +++G  + EIA  L IS  TV 
Sbjct: 101 LKAIVRLRQYGHHSLPPLHATA---HDLSPREIEVLVLLTKGCINKEIAERLNISLTTVI 157

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  +I  K   K+ S    YAV +  V
Sbjct: 158 SHRKNITEKLGIKSVSALAIYAVMHGYV 185


>gi|255526738|ref|ZP_05393640.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|255509573|gb|EET85911.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
          Length = 215

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDV 178
           I      +N +             L     +  +   +R++E      +Y  +   + D 
Sbjct: 78  IIVDFYENNEFFVKALKSGVQGYVLGKSNEEEILYAIERVYEGKKYFDSYFVDSIINKDT 137

Query: 179 HWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 EL T RE E L  +++G ++ +I+    I+ NTV  +I  I+ K   K R+ A 
Sbjct: 138 DLPNKLELLTNREREILIEVAKGLSNPKISEKFFITENTVKKHINHILNKLNIKDRTEAA 197

Query: 238 AY 239
            Y
Sbjct: 198 LY 199


>gi|212693876|ref|ZP_03302004.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855]
 gi|212663408|gb|EEB23982.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855]
          Length = 214

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 159 LWEIGLLAAYQANMFKSY---DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISR 214
           + +I  L  Y     K      +H  K + EL+ RE+E L  I++G  + EIA  L IS 
Sbjct: 118 IKDIHQLRQYGHQARKQAVDKAMHIEKTEHELSIREIEVLILITKGLINKEIADKLHISL 177

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV ++  +I  K   K+ SG   YAV N  +
Sbjct: 178 TTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 209


>gi|194292793|ref|YP_002008700.1| two component response regulator transcriptional regulator protein
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226697|emb|CAQ72648.1| putative TWO COMPONENT RESPONSE REGULATOR TRANSCRIPTION REGULATOR
           PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 226

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++          D     +   +  +R G   + P     + +RL       A    
Sbjct: 94  VLASIEAGAIGYLLKDETTDRIAASIGELRAGGSPMSPLIARQVVNRLR-----GAPAEA 148

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +           L+ RE E L  IS G T  E A  LG+S +TV ++I +I  K A +
Sbjct: 149 AAREAAGAGAGAVVLSVRENEILDLISRGYTYAETARYLGLSVHTVQSHIKNIYGKLAVR 208

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A+  A +  ++
Sbjct: 209 SRGEAVFEAAKLGLL 223


>gi|284029989|ref|YP_003379920.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283809282|gb|ADB31121.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 902

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            DRL     + AY A      D   G    L+ RE E    ++EG T+ +IA  L +S  
Sbjct: 803 ADRLARSLGMTAY-AGRLPVGDAPGG----LSPREAEVAALVAEGLTNRQIAERLVLSER 857

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVR 242
           T  N++  I+ K    TRS   A++ R
Sbjct: 858 TAQNHVQHILTKLGFTTRSQIAAWSAR 884


>gi|242239203|ref|YP_002987384.1| transcriptional regulator NarL [Dickeya dadantii Ech703]
 gi|242131260|gb|ACS85562.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech703]
          Length = 216

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 11/162 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           +    ++  +    + ++P      VF          + + N    Y     +   +   
Sbjct: 60  LNMPGMNGLETLARLREKPLSGRIVVFSVSNHEDDVVSALKNGADGYLLKDMEPEDLLAA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           L        ++          L    A   +       +D + LT RE + L  I++G  
Sbjct: 120 LQQAAAGKMVLSDT-------LTPILAASLRENRHPGDRDIQQLTPREKDILKLIAQGLP 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +  IA  L I+ +TV  ++  +++K   ++R  A  + ++  
Sbjct: 173 NKVIARKLNITESTVKVHVKHLLKKMKLRSRVEAAVWVLQEK 214


>gi|237880805|gb|ACR33063.1| response regulator [Actinoplanes garbadinensis]
          Length = 222

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE E L  + +G T  E+A  LG+S  TV  ++ +I RKT T  R+ A+  A+ N
Sbjct: 152 REAEVLDLLRQGLTDREMARRLGLSAKTVEKHVGAIRRKTGTSNRTAAVVTALDN 206


>gi|227329494|ref|ZP_03833518.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 16/193 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-TELFCPVFHTLPENI 120
           L+V       + +  ++++D  FD++   +   +         P   L       L    
Sbjct: 10  LIVDDHPLMRRGIRQLLATDAIFDVIGEASNGMEALSLANRDSPDIILLDLNMKGLSGLD 69

Query: 121 TPPAGMDNRYCS----LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-- 174
           T  A   +  C+    LT   A   I  ++       +L+D   E  L A    + F   
Sbjct: 70  TLHALRRDGICARVIVLTVSDAPSDIYALMDAGADGYLLKDSAPEHLLDAIRNGDAFSEQ 129

Query: 175 ---------SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                    +          LT RE++ L  ++ G ++ +IA +L IS  TV  +I +++
Sbjct: 130 VRDVLRHRIAIQDTPSPFTVLTERELDVLQEVASGLSNKQIASVLYISEETVKVHIRNML 189

Query: 226 RKTATKTRSGAIA 238
           RK   ++R  A  
Sbjct: 190 RKLNVRSRVAATV 202


>gi|218892730|ref|YP_002441599.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|218772958|emb|CAW28770.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 146 LTERQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|154687453|ref|YP_001422614.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154353304|gb|ABS75383.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 215

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 5/146 (3%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K          +    F      +         Y     +  RIR  +  +F    I
Sbjct: 65  EAAKRIAEETDTKPMILTTFDDDEYILEAIKNGAKGYLLKNTEPERIRDAIKSVFNGHSI 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +    L +I    +  A      D     + + T RE+  ++ I++G ++ EI+  L IS
Sbjct: 125 LQDTVLDKIKDSLSRPAEAAHQID-----ESQFTERELSIMSLIAKGFSNREISKQLFIS 179

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAY 239
             T  NYI+SI+ KT  + R+    Y
Sbjct: 180 EGTTANYISSILGKTGLEHRTQIAIY 205


>gi|91793679|ref|YP_563330.1| regulatory protein, LuxR [Shewanella denitrificans OS217]
 gi|91715681|gb|ABE55607.1| transcriptional regulator, LuxR family [Shewanella denitrificans
           OS217]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 19/188 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDN 128
           Q L  ++   WP + +  +  +      + L        +F      L ++      ++ 
Sbjct: 14  QLLTDLLECRWPQEFLIKLTHASPGNLADKLDSHLVSVVVFDLATVDLQQSYQLQRLIER 73

Query: 129 RYCSLT---FDVARIRIGLMLLFPKGRI---ILRDRLWEI--GLLAAYQANMFKSYDVH- 179
            Y S+     +  R      L+ P   +    L   + EI  GL    +      +++H 
Sbjct: 74  EYSSIKTVFLNFPRQIDAKFLIHPATSVGVFYLDSGISEISSGLNDILKGRSVMPFELHQ 133

Query: 180 -------WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                    +   LT RE E L  +  G T+ +IA  L +S +T+  ++    RK    +
Sbjct: 134 SMLHDDTEDETDSLTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRAFRKIGVSS 193

Query: 233 RSGAIAYA 240
           R  AIA+A
Sbjct: 194 RGQAIAWA 201


>gi|78062243|ref|YP_372151.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383]
 gi|77970128|gb|ABB11507.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. 383]
          Length = 913

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 156 RDRLWEIGLL-----AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           RDRL  I  L     A YQ +   +      +   L+ RE + +  I+ G+++ EIA  L
Sbjct: 814 RDRLAYIERLLDGCRAQYQQDAQPA---RAAQRDMLSVRERDIVELIAHGQSNKEIARTL 870

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GI+  TV ++I S+  K     R+ A+A A    ++
Sbjct: 871 GIAPETVKSHIKSLFMKLEVDKRARAVAVAQSLGLL 906


>gi|319648461|ref|ZP_08002677.1| YvfU protein [Bacillus sp. BT1B_CT2]
 gi|317389540|gb|EFV70351.1| YvfU protein [Bacillus sp. BT1B_CT2]
          Length = 197

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 30/56 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE + L     GKT+ EI+  L +S  TV NYI+ IM+K   K R  A   A
Sbjct: 136 PLTEREQDILRLAYIGKTTKEISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIA 191


>gi|223934624|ref|ZP_03626544.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896579|gb|EEF63020.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 226

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F +L                L   +  I  G   + P+    + +    + +        
Sbjct: 94  FQSLTAGADGYLLKRVARARLLEALRDIVAGGAPISPQMARRMVEYFHNLNMAGTPSPAQ 153

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K+ DV      ELT RE E L  ++ G T  E+A  L IS  TV NYI  I  K    T
Sbjct: 154 SKAADVTA----ELTAREREVLELLARGATPKEVAAELNISWQTVRNYIRFIYDKLHVHT 209

Query: 233 RSGAIAY 239
           R+ A+  
Sbjct: 210 RTDAVLK 216


>gi|170756351|ref|YP_001781185.1| LuxR family transcriptional regulator [Clostridium botulinum B1
           str. Okra]
 gi|169121563|gb|ACA45399.1| transcriptional regulator, LuxR family [Clostridium botulinum B1
           str. Okra]
          Length = 865

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           +L+   E     F+ L E I     +DNRY           + ++      + I      
Sbjct: 725 ILEELNESKRTTFNLLREAIH--YSVDNRYLKPYVLEGEKLLNIIKELKNDKDIELTSKE 782

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +      +  N+    +    K   LT RE E +  + EG ++ +I   L IS  TV  +
Sbjct: 783 D-----NFIKNLIDIMEPEKVKGELLTEREKEVMEILFEGSSNKQIGKRLNISLATVKTH 837

Query: 221 IASIMRKTATKTRSGAI 237
           + +I  K     R  A+
Sbjct: 838 MINIYSKLQVSNRVQAV 854


>gi|148271887|ref|YP_001221448.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829817|emb|CAN00738.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 3/139 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +       L E +        R   L        I  M    +GR  L D +    ++A 
Sbjct: 90  VLVATTFDLDEYVFGALEAGARGFVLKDAEPEEFIQAMRALAEGRAAL-DGVTTRRVMAE 148

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +      S  VH G +  LT RE + +  + +G ++DEI   L I  +TV +++  IM K
Sbjct: 149 FTRRRAASA-VHPGTEV-LTPREQDIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTK 206

Query: 228 TATKTRSGAIAYAVRNNIV 246
             T+ R   + +  R+ ++
Sbjct: 207 LGTRDRLQTVVWGYRSGLL 225


>gi|153206810|ref|ZP_01945651.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165924176|ref|ZP_02220008.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
 gi|212212538|ref|YP_002303474.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212218401|ref|YP_002305188.1| response regulator [Coxiella burnetii CbuK_Q154]
 gi|120577173|gb|EAX33797.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916380|gb|EDR34984.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
 gi|212010948|gb|ACJ18329.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212012663|gb|ACJ20043.1| response regulator [Coxiella burnetii CbuK_Q154]
          Length = 214

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 11/159 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
             +  +    +L+R   +   +   +  ++ P   ++     + + + D   +   +  +
Sbjct: 59  DTNGLELSRKLLRRDATIKILMVTGMEGDLLPMRLLEVGVRGFITKSSDTTELEQAIRAV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +   R I       + L         K+         +L+ RE+E L  +++GK ++ IA
Sbjct: 119 YKGQRYISSAIANRLAL--------SKTTTAATSPFKKLSDREMEVLLLLAKGKKAEAIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L I+  TVN++   I  K   K     I  AV+  +V
Sbjct: 171 KQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQYGLV 209


>gi|158316791|ref|YP_001509299.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112196|gb|ABW14393.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec]
          Length = 81

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G ++ EI+  L +   T   ++  I+ K   + R  A+ +A  + +V
Sbjct: 13  EREHEVLLLLGRGLSNAEISARLHVGEATAKTHVKRILDKLGLRDRMQAVVFAFDHGLV 71


>gi|331085012|ref|ZP_08334099.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408712|gb|EGG88177.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 208

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 127 DNRYCSLTFDVARIRIGL----MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           D+ Y      +      L      + P  R++L+++      +      +F+       +
Sbjct: 86  DDEYIIKALHLGARGYILKQDYTGISPAIRVVLKEQTVFGAEITTRIPKLFEPQKAFDYE 145

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++LT RE   +  +++G+++ EIA  L +   TV NY++SI+ K   + R+    +  +
Sbjct: 146 TYQLTSREFSIIELVADGRSNREIAEALYLGEGTVRNYLSSILEKLELRDRTQLAVFFYQ 205

Query: 243 N 243
           +
Sbjct: 206 H 206


>gi|308051091|ref|YP_003914657.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307633281|gb|ADN77583.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 204

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 18/155 (11%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTL----PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                   ++R       V  T+     +         N Y     +   +  GL  +  
Sbjct: 64  SGLDTLRAIRRDFPRLKVVMFTVSDHPRDVQAVLDAGANGYLVKDSEPEELVEGLAEVM- 122

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G+ +L  RL   G LA  + N             +LT RE +    I+EGK++  I   
Sbjct: 123 AGQAVLTPRLE--GALAEAEENWAA----------QLTPRERQIAELIAEGKSNKAIGEA 170

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L IS  T   ++ ++MRKT   +R       VR  
Sbjct: 171 LFISEGTAKVHVKNLMRKTDCHSRVELALK-VREG 204


>gi|307709859|ref|ZP_07646308.1| DNA-binding response regulator [Streptococcus mitis SK564]
 gi|307619408|gb|EFN98535.1| DNA-binding response regulator [Streptococcus mitis SK564]
          Length = 199

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A
Sbjct: 130 EVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEA 189

Query: 237 IAYAVRNN 244
              A  + 
Sbjct: 190 ANIAKESG 197


>gi|290962624|ref|YP_003493806.1| regulator [Streptomyces scabiei 87.22]
 gi|260652150|emb|CBG75282.1| putative regulator [Streptomyces scabiei 87.22]
          Length = 1002

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S +    +   L+ RE E    +++G TS  IA  L +S  TV  +++ I RKT   +R
Sbjct: 926 PSREAASEELAVLSPREREIAALVAKGLTSPAIAERLFLSPRTVETHLSRIYRKTGVTSR 985

Query: 234 SGAIAYAVR 242
           +   A  VR
Sbjct: 986 AALAALQVR 994


>gi|227497321|ref|ZP_03927553.1| possible response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833192|gb|EEH65575.1| possible response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 240

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y +     A +   +  +          RL    +L
Sbjct: 103 RFLALSVSDASEDVVGVIRAGARGYVTKAISTADLAQAVRRVAAGDAAFSP-RLAGF-VL 160

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A+ A   +   V   +   L+ RE E +  I+ G T  E A  L IS  TV  ++++++
Sbjct: 161 DAFGAGTGE-VAVADSELDRLSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVL 219

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R+    +A    IV
Sbjct: 220 RKLQLSNRNELTRWAAARRIV 240


>gi|255308234|ref|ZP_05352405.1| salavaricin two-component response regulator [Clostridium difficile
           ATCC 43255]
          Length = 200

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + I  D L +  LL  YQ       +       +LT  E   L  I  GK    IA  L
Sbjct: 102 NKNISPDNLID-SLLKVYQGGTCFPSENTEVIIEDLTSMEKRILQLICSGKKRKIIADEL 160

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  T++N++  I  K    +   AI  A++   +
Sbjct: 161 YISERTLSNHLQHIYDKLDVSSSVEAITKAIQMGYI 196


>gi|322388622|ref|ZP_08062222.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321140542|gb|EFX36047.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 199

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +EV  L  +++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A    
Sbjct: 177 ILSKLGASNRTEAAKTAEEEG 197


>gi|271968448|ref|YP_003342644.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511623|gb|ACZ89901.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 215

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 2/148 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+   +       P  +    F                +         +   +  +   
Sbjct: 62  GLTAAARISAASDGPGVIMLTTFDLDEYVHEALRLGAVGFLLKDTPPRELAAAVRTVAAG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             I+    +    L+ ++        +   G+   LT RE + +  ++ G ++ EI   L
Sbjct: 122 QAILSPAVIKR--LITSFVDKAPSRAESARGRLASLTAREEDVIRVLARGLSNAEIGREL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIA 238
            ++  TV  +++ ++ K     R  A  
Sbjct: 180 KLTEATVKAHVSRLLAKLGLANRVQAAI 207


>gi|16119495|ref|NP_396201.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15162039|gb|AAK90642.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 39/70 (55%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +   G+  ELT RE + L  I+ GK++ + A+ L I+  T+  +  +I RK    T +G 
Sbjct: 139 ESSTGRLKELTTREQDVLLLIARGKSNRDAALALDIAERTMETHRKNIKRKLDIATTAGL 198

Query: 237 IAYAVRNNIV 246
           I YA+ + ++
Sbjct: 199 IRYAIDHGLI 208


>gi|84387407|ref|ZP_00990426.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|84377660|gb|EAP94524.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
          Length = 227

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE +    +  G ++ EI+  L IS +TV  ++ +I +K     R  AI  A
Sbjct: 158 NLTKREAQIFKRVVRGDSNLEISSELFISESTVKTHVYNIYKKINVTNRKEAIRKA 213


>gi|295085346|emb|CBK66869.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bacteroides xylanisolvens XB1A]
          Length = 245

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI     + 
Sbjct: 183 NLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQESG 242

Query: 245 IV 246
           ++
Sbjct: 243 LL 244


>gi|291459358|ref|ZP_06598748.1| putative nitrate/nitrite response regulator protein NarL
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417957|gb|EFE91676.1| putative nitrate/nitrite response regulator protein NarL
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 220

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                   K   LT RE E    + +G T+ EI+  L I+  T   ++++I+ K  +K R
Sbjct: 130 PRLSEEEKKLGTLTEREREVYELMCQGYTNLEISARLFITEGTAKRHVSNILSKLGSKNR 189

Query: 234 SGAIAYAVRNNIV 246
             A+  + +   +
Sbjct: 190 VEAVIQSGQKGYL 202


>gi|228990797|ref|ZP_04150762.1| Response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228996897|ref|ZP_04156530.1| Response regulator [Bacillus mycoides Rock3-17]
 gi|229004572|ref|ZP_04162310.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228756613|gb|EEM05920.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228762776|gb|EEM11690.1| Response regulator [Bacillus mycoides Rock3-17]
 gi|228769323|gb|EEM17921.1| Response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 212

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 13/213 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL--VRC 89
           +  +++  D        M  +        F ++      ++ LD     D    L  VR 
Sbjct: 1   MKIKVLIADDNSFIREGMKIILSTYE--EFEVLETVNDGQEALDYCKKHDVDIALLDVRM 58

Query: 90  MALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             ++  +    + +  +   L    F      +         Y     D  RIR  +  +
Sbjct: 59  PNMNGVEATKLICEETKTKPLILTTFDDDEYILEAVKNGAKGYLLKNNDPERIRDAIKGV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEI 206
           +    ++    L +I        N+ ++ +     D  L T RE+  +  I++G ++ EI
Sbjct: 119 YNGQTVMQDVVLDKIK------CNLLENKEEESKIDKTLFTERELSIIALIAKGFSNKEI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  L IS  T+ NYI SI+ KT  + R+    Y
Sbjct: 173 SKQLFISEGTIANYITSILGKTGLEHRTQIAIY 205


>gi|212212758|ref|YP_002303694.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212011168|gb|ACJ18549.1| response regulator [Coxiella burnetii CbuG_Q212]
          Length = 216

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 12/159 (7%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
             +  +    +L+R  E+   V   +   + P   +D     + + + D   +   +  +
Sbjct: 59  DTNGLELARKLLRRDPEIKILVVTAMEGELLPMRLLDVGVRGFITKSSDSGELERAIRAV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R I       + L                    +L+ R++E L  +++G  ++EIA
Sbjct: 119 HSGQRYISSAIASRLAL---------SKTTPTKSPFDQLSHRQMEVLLLLAKGMKAEEIA 169

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L I+  TVN++   +  K   K     I  AV+  ++
Sbjct: 170 KQLHITAKTVNSHRYRMFDKLGVKNDVELIKLAVQYGVI 208


>gi|223935686|ref|ZP_03627602.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895694|gb|EEF62139.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   L+ RE E L  +++G    EIA  L IS +TV  ++ SI  K    +R+ A+
Sbjct: 142 PAPNEIASLSKREEEVLHHLAQGYLYKEIADRLSISIDTVRKHLNSIYNKLHVHSRTDAV 201

Query: 238 AYAVRN 243
              ++ 
Sbjct: 202 VKYLQK 207


>gi|106879455|emb|CAJ20008.1| putative DNA binding regulatory protein [Streptomyces cattleya]
          Length = 234

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ +  ++ G  + +IA  L I+  TV  +++++  K     R+ A+  AV   +
Sbjct: 162 LTARELQVVALVARGLRNSQIARELVITEGTVKRHLSNVYAKLDAACRTEAVRKAVERGM 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|300790143|ref|YP_003770434.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799657|gb|ADJ50032.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 217

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 3/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           PT      F              N +     D A +   +  L   G ++          
Sbjct: 77  PTVAMLTTFDIDEYVSLALRLGANGFLLKDIDPAALLRAVRDLSRGGAVLDPGV---AAR 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +     +  ++          L+ RE E +  I +G ++ EI   L +S  TV  Y++++
Sbjct: 134 MVQSHRDEQRAAQPARKLLASLSEREREVVALIGQGLSNAEIGGRLHLSEATVKGYVSAV 193

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K     R  A   A R  ++
Sbjct: 194 LSKIGAANRVQAALLAYRGGLL 215


>gi|329961768|ref|ZP_08299799.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
 gi|328531509|gb|EGF58349.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
          Length = 186

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 40/86 (46%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E  L+          +      + EL+ RE+E L  I++G  + EIA  L IS  TV ++
Sbjct: 96  EKSLIKNILQLHQYGHQHGHPGEHELSAREIEVLVLITKGLINKEIADKLNISLTTVISH 155

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
             +I  K   K+ SG   YAV +  V
Sbjct: 156 RKNITEKLGIKSVSGLTIYAVMHGYV 181


>gi|323137329|ref|ZP_08072407.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
 gi|322397316|gb|EFX99839.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
          Length = 220

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y     + + I   +  +      +      +I        +  ++       
Sbjct: 99  ITAGAQAYLLKDSEESEILAAIRAVAKGEPRLSPSVAAKILAEFRRVKSPQRAASPSAED 158

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE   L  ++ GK + EIA  +G++  TV N++++I+ K   ++R+     A+ 
Sbjct: 159 EEPLTDREKAVLAHVAAGKGNREIAREMGLAEGTVKNHVSTILAKLHLRSRTELAIRALS 218

Query: 243 NN 244
           N 
Sbjct: 219 NR 220


>gi|52082580|ref|YP_081371.1| CheY-like [Bacillus licheniformis ATCC 14580]
 gi|52787980|ref|YP_093809.1| YvfU [Bacillus licheniformis ATCC 14580]
 gi|52005791|gb|AAU25733.1| CheY-like [Bacillus licheniformis ATCC 14580]
 gi|52350482|gb|AAU43116.1| YvfU [Bacillus licheniformis ATCC 14580]
          Length = 200

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 30/56 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE + L     GKT+ EI+  L +S  TV NYI+ IM+K   K R  A   A
Sbjct: 139 PLTEREQDILRLAYIGKTTKEISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIA 194


>gi|46206216|ref|ZP_00210249.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 216

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 69/181 (38%), Gaps = 19/181 (10%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE---------NITPPAGMD 127
           IV    P +L++ +    K     V  R      P +    +          + P A  D
Sbjct: 30  IVDVSNPLELIKGLQSPFKTDLVIVGSRLLPAGDPTYLGALKREAGAARLLLVVPQASAD 89

Query: 128 --NRYCSLTFD---VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN---MFKSYDVH 179
                 SL F    V R R   ML+    R IL  RL+    +   +             
Sbjct: 90  LFQDALSLGFHGLVVRRQREDEMLMAV--RTILEGRLYAPSAILPVKPPDPAAPIRQAER 147

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             + F LT R+ E L  I +G ++ EIAV L I+  TV  ++++++R    + R+ A   
Sbjct: 148 GERSFGLTLRQREVLALIGKGLSNREIAVALSIAEATVKIHVSAVIRVLGVRNRTEAALL 207

Query: 240 A 240
           A
Sbjct: 208 A 208


>gi|260174355|ref|ZP_05760767.1| LuxR family transcriptional regulator [Bacteroides sp. D2]
 gi|315922623|ref|ZP_07918863.1| luxR family transcriptional regulator [Bacteroides sp. D2]
 gi|313696498|gb|EFS33333.1| luxR family transcriptional regulator [Bacteroides sp. D2]
          Length = 200

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +IM K   K+ SG   YAV N  
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIMEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|227549492|ref|ZP_03979541.1| possible transcriptional regulator [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078435|gb|EEI16398.1| possible transcriptional regulator [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 240

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 4/152 (2%)

Query: 98  YYNVLQRPTELFCPVFHTL---PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
              ++++  E    +  T     + +     +  +   L        I  +    +G  +
Sbjct: 81  AAQIIRQRRETTKVLMLTTFDSEDLVRRALEIGVQGFMLKDSGPEALIDAIRRIHQGASV 140

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L   + E  ++  ++ +              LT RE+E L  ++  +T+ EIA  L I  
Sbjct: 141 LSPGITEF-VINGFRDSCVAESTTTAPPVEPLTPRELEVLERVALAETNAEIAAHLHIGA 199

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  Y++ ++ K   + R G   +A  + IV
Sbjct: 200 ATVKTYVSRLIAKLGVRDRVGLAVWAHTSGIV 231


>gi|291615036|ref|YP_003525193.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291585148|gb|ADE12806.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 228

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 54/130 (41%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            ++I                 ++I +  + +  +G + L  +L +  +    Q     S 
Sbjct: 89  RDDIESVMESGAMGFISKMSSSKIMLSALRMVLEGGVYLPPQLLQQAVNNVDQGESLSSK 148

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                  F LT R++E LT+++ G  + EI+  + ++  TV  + A++ +     +R  A
Sbjct: 149 RSQRAAKFGLTSRQLEVLTYLASGLANKEISKRMNLAEGTVKIHTAAVYQALHANSRLEA 208

Query: 237 IAYAVRNNIV 246
           ++ A R   +
Sbjct: 209 VSAARRLGFL 218


>gi|284990973|ref|YP_003409527.1| LuxR family transcriptional regulator [Geodermatophilus obscurus
           DSM 43160]
 gi|284064218|gb|ADB75156.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus
           DSM 43160]
          Length = 316

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 9/171 (5%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L+R  A++       + + P  +  P           P G+ ++  +L   V +    
Sbjct: 103 HPLIRWYAVTGSSAPQILGRVPRAVAGPRLRAEWSAFARPFGITHQ-LALPLRVGQGIES 161

Query: 144 LMLLFPKGRIILRDRLWEIGLL--------AAYQANMFKSYDVHWGKDFELTGREVECLT 195
            ++  P       D      ++                 +          LT RE   L 
Sbjct: 162 YVVSRPDDDYDDADADLAALVVPALAALVRQHRVLRDVPAEQYDCAYGIRLTRREFAVLR 221

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EG T+  IA  L  S  TV+ ++  + RK   + R  A+  A    ++
Sbjct: 222 LLGEGLTAQAIARRLRTSPRTVHKHLEHLYRKLGVRDRLMAVQRARDAGLL 272


>gi|218663384|ref|ZP_03519314.1| probable two-component response regulator protein [Rhizobium etli
           IE4771]
          Length = 178

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M  S          LT RE E +  +++G ++  I + L +   TV +++  I+ K    
Sbjct: 106 MENSLHDSASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVS 165

Query: 232 TRSGAI 237
            R+ A 
Sbjct: 166 NRTEAA 171


>gi|190349640|gb|ACE75883.1| quorum sensing response regulator [Serratia plymuthica]
          Length = 248

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +D    K+   + RE E + W S GK+  EIA+ILGI   T+  +I + ++K        
Sbjct: 170 FDKMNNKEI-FSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKH 228

Query: 236 AIAYAVRNNIV 246
           AI   V   ++
Sbjct: 229 AIRLGVELQLI 239


>gi|241518365|ref|YP_002978993.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862778|gb|ACS60442.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 203

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +   LT RE E +  ++EG ++ +I   L +   T+ +++  I+ K     R+ A   
Sbjct: 139 FDRPASLTARETEVIELVAEGLSNKQIGRRLNLQEKTIKHHMTEILSKLGASNRTEAAIR 198


>gi|71737558|ref|YP_276359.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71558111|gb|AAZ37322.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 209

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D+  G    LT R+ E L  ++ GKT+ EIA  LGIS  T+  +++S+++     TRS 
Sbjct: 137 SDLDSGAISHLTARQREVLGLVASGKTNKEIARDLGISPFTMRIHVSSLLKALGVSTRSA 196

Query: 236 AIA 238
           A A
Sbjct: 197 AAA 199


>gi|114321300|ref|YP_742983.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227694|gb|ABI57493.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 264

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E    I++G ++ +IA  L IS NTV  Y++ ++  T    R+     A R+ +
Sbjct: 199 LTKRQREVTELIAKGHSNYQIANHLQISENTVKLYVSQVLALTGVSNRTQLALLANRHGL 258

Query: 246 V 246
           +
Sbjct: 259 L 259


>gi|331003869|ref|ZP_08327361.1| hypothetical protein HMPREF0491_02223 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412061|gb|EGG91458.1| hypothetical protein HMPREF0491_02223 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 217

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF+ L    +          SL   +  +  G  ++ P    I    L     LA     
Sbjct: 90  VFNALKYGASGYLLKGISMESLVEAINTVYQGQAMINPD---IASKVLRFFSKLAV---- 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             ++  V       +T  E   +  +++GK++ EIA  L  S  TV NY+++I+ K   +
Sbjct: 143 NNETIHVPTENVKAITKNEWSIIEEVAKGKSNKEIAKELNFSEGTVRNYLSTILDKLELR 202

Query: 232 TRSGAIAYAVRNN 244
            R+    +A+   
Sbjct: 203 DRTQLAIWAIGRG 215


>gi|326391343|ref|ZP_08212882.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992606|gb|EGD51059.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 257

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELT 187
             ++   +    IG + L      ++ + +  + LLA    + +     +       +L 
Sbjct: 138 CIAIPLIIDDEIIGYLDLSTIKDSMVDEMVVIVELLAYKIVSDYIRMFGNKAKNSRVKLK 197

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++ L  +++G     IA  LGIS NTVN +  +I +K   ++   AIA A+R  ++
Sbjct: 198 EEQLKVLKLVTKGYKDIVIAKELGISINTVNYHKRNIFKKLDVRSTREAIAKAIRMGLI 256


>gi|326403930|ref|YP_004284012.1| LuxR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050792|dbj|BAJ81130.1| LuxR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 319

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  G DF LT R+      + +GK +  IA  LG+S +TV  +I +IMRK     R
Sbjct: 241 PPSGFAPGDDF-LTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMRKIGATNR 299

Query: 234 SGAIAYA 240
           + A+  A
Sbjct: 300 TQAVYKA 306


>gi|294141463|ref|YP_003557441.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293327932|dbj|BAJ02663.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E  L  +V      D+ +   + ++      + R   L  P        I P       Y
Sbjct: 46  EGSLSLVVIDLATVDVQKAYQI-QRHIEKEYVSRVVFLHYPRQIDARFLIHPTVTAGIFY 104

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
           C  + +     +G +L   +G+ ++   L         Q++M  S +        LT RE
Sbjct: 105 CDASLEDVGQGLGNIL---RGKSVIPAELVHNS--GDDQSHMEGSDN--------LTIRE 151

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            E L  +  G T+ +IA  L +S +T+  ++    RK    +R  AIA+
Sbjct: 152 REVLQALLSGSTNVDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAW 200


>gi|149203772|ref|ZP_01880741.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. TM1035]
 gi|149142889|gb|EDM30931.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. TM1035]
          Length = 200

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +LT RE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+
Sbjct: 129 EREQLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIASTAGLTRYAL 188

Query: 242 RNNIV 246
            + ++
Sbjct: 189 EHGVL 193


>gi|119715190|ref|YP_922155.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535851|gb|ABL80468.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 216

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +          + +   L   + ++  G  L+ P     + +R+      A   A  
Sbjct: 97  FAAIMAGAAGYVLKEIKGSDLVSAIRQVAAGNSLIDPTLTARVLERVRHPPTTAPELA-- 154

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                       ELT +E++ L +I+EG T+ +I   + ++  TV NY++SI+ K   + 
Sbjct: 155 ------------ELTEQELKLLGYIAEGLTNRQIGERMYLAEKTVKNYVSSILAKLGLER 202

Query: 233 RSGAIAYAVR 242
           R+ A   A +
Sbjct: 203 RTQAAVLASK 212


>gi|331698643|ref|YP_004334882.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953332|gb|AEA27029.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 225

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L AA   +  +       +   LT +E++ L  ++ G ++ EI   L IS NT   ++ +
Sbjct: 125 LCAAGPRHARQRLRAVADRGENLTDKEIDVLALVAAGLSNQEIGETLLISENTAKFHVGN 184

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
           ++RK   K R      A  + I
Sbjct: 185 VIRKFGAKRRGELAHLAAADGI 206


>gi|323494771|ref|ZP_08099870.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323310964|gb|EGA64129.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 219

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A     + + +     I   +  +      +  D +      A+ +     + ++    
Sbjct: 95  IAYGAVGFIAKSSSKEVIAEAIENVLEGNIYLPADIIRTQATTASVKQESPLTPEMLSS- 153

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              LT R++  L  +++G+ + +IA  L +S  TV ++++SI++K     R  A+
Sbjct: 154 ---LTRRQLMVLKCMTKGEANKQIAYNLNVSETTVKSHVSSILKKLGVTNRVQAV 205


>gi|311030273|ref|ZP_07708363.1| two-component response regulator DesR [Bacillus sp. m3-13]
 gi|311032980|ref|ZP_07711070.1| two-component response regulator DesR [Bacillus sp. m3-13]
          Length = 199

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE------IGLLAA 167
            T  E      G+  +   LT           L       +L+D   E        +++ 
Sbjct: 60  KTGLEAAEEIKGLGCKVIILTTFARTGYFQRALKAGVTGYLLKDSPSEDLANSIRSIMSG 119

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +    +  D  +G++  LT RE   L  +++GK + EIA  L I   TV NYI++I+ K
Sbjct: 120 RRVYAPELMDDFYGEENPLTEREKAVLELVADGKNTQEIADELRIKSGTVRNYISNILDK 179

Query: 228 TATKTRSGAI 237
              K R  AI
Sbjct: 180 LEVKNRIEAI 189


>gi|229160795|ref|ZP_04288786.1| Response regulator [Bacillus cereus R309803]
 gi|228622643|gb|EEK79478.1| Response regulator [Bacillus cereus R309803]
          Length = 212

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I        N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------CNLMESKEDECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI SI+ KT  + R+    Y
Sbjct: 179 SEGTIANYITSILGKTGLEHRTQIAIY 205


>gi|284033583|ref|YP_003383514.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283812876|gb|ADB34715.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 225

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  + A      +       +LT RE E L  ++ G ++ EIA +  +S  TV  +I  I
Sbjct: 140 LLEHFAGSLPDGEREVPDLADLTAREREVLVEVARGLSNTEIARLFTLSEATVKTHIGRI 199

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + KT  + R   +       +V
Sbjct: 200 LAKTGLRDRVALVVLGYETGLV 221


>gi|167619378|ref|ZP_02388009.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           Bt4]
          Length = 74

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K    +R     YAV   
Sbjct: 6   QLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERG 65

Query: 245 I 245
           +
Sbjct: 66  L 66


>gi|167581294|ref|ZP_02374168.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           TXDOH]
          Length = 86

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K    +R     YAV   
Sbjct: 18  QLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERG 77

Query: 245 I 245
           +
Sbjct: 78  L 78


>gi|111024873|ref|YP_707293.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110823852|gb|ABG99135.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 287

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R RL E+       A    S     G++ +LT RE++ L  ++ G T+ EIA  L +   
Sbjct: 198 RSRLHELS--DRIAALRQPSNATRPGREMQLTPREIDVLAHVALGCTNSEIAQRLSVGPQ 255

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV +Y+ + M K +  +R  A+  A +  ++
Sbjct: 256 TVKSYLRAAMNKLSACSRQEAVVTARKFKLL 286


>gi|146297802|ref|YP_001192393.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146152220|gb|ABQ03074.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 221

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I + KT+ EIA  L +S  TV  +  +++ KT ++  +G + YA++N I
Sbjct: 157 LSPREIEILQLICQQKTTSEIAEHLFLSPRTVEGHRNNLLLKTESRNIAGLVVYAIQNEI 216


>gi|288916832|ref|ZP_06411205.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288351717|gb|EFC85921.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 677

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                +      +   LT RE++    I  GK++ EIA  L +S  T+ +++  I  K  
Sbjct: 601 GRRIAADGRTAAQVAALTDRELDVARLIRSGKSNREIAAALFLSEKTIEHHLTRIFAKLG 660

Query: 230 TKTRSGAIAYAVR 242
             +R+ A +   R
Sbjct: 661 VSSRAAAASILTR 673


>gi|282877369|ref|ZP_06286192.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC
           35310]
 gi|281300421|gb|EFA92767.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC
           35310]
          Length = 203

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 154 ILRDRLWEIGLL---AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           +  D+L    L+    A+         +   K   L+ RE+E L+ I +G  + EIA  L
Sbjct: 103 VPEDQLVRSLLMLEQNAHGGGQRFPSSLKTLKTKILSDREIEVLSLIVQGYINKEIADQL 162

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I   TV  +  +IM K   K+ S    YAV +  V
Sbjct: 163 NIGMTTVITHRKNIMDKLGVKSVSALTIYAVMHGYV 198


>gi|111022376|ref|YP_705348.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110821906|gb|ABG97190.1| possible transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 890

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           AR  +G  +     R      + E+   A  +                L+ RE +    +
Sbjct: 780 ARTSLGDTVYSASHRRGSTLSMAELIAYALDEEFSDSPVPSSSYPAVGLSPREWDIAQCV 839

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           ++G T+ EIA  L +S  TV  ++A ++RK     R   A A A
Sbjct: 840 ADGLTNKEIADRLVLSVRTVEGHVAHVLRKLGVPRRHQVAAALA 883


>gi|107100830|ref|ZP_01364748.1| hypothetical protein PaerPA_01001859 [Pseudomonas aeruginosa PACS2]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 146 LTERQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|114562693|ref|YP_750206.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333986|gb|ABI71368.1| transcriptional regulator, LuxR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 21/189 (11%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDN 128
           Q L  ++ S WP + +  +  ++      +L        +F      L +       ++ 
Sbjct: 14  QLLIDLLDSRWPQEFLVKLTKAQPGNMSKLLSTQTNSMVVFDLATIDLQQAYQLQRVIER 73

Query: 129 RYCSLT---FDVARIRIGLMLLFPKG--------------RIILRDRLWEIGLLAAYQAN 171
            YC +     +  +      L+ P                   L + L    ++      
Sbjct: 74  EYCGIRTVFLNFPKQVDAKFLIHPSTTTGVFYTNANLADVSSGLNEILKGRSVIPQDLYQ 133

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S + H     +LT RE E L  +  G T+ +IA  L +S +T+  ++    RK    
Sbjct: 134 SLMSVN-HDDDSEQLTIREREVLQTLLSGSTNLDIANQLFVSESTIKTHLYRAFRKIGVS 192

Query: 232 TRSGAIAYA 240
           +R  AIA+A
Sbjct: 193 SRGQAIAWA 201


>gi|332672165|ref|YP_004455173.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332341203|gb|AEE47786.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 224

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 48/135 (35%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L               +L   V R+  G  +L P+    L   L      A     
Sbjct: 88  VLGMLRAGAVGFLLKTTGAAALVDAVQRVAAGDGVLAPEVTRRLLADLVAAAPAADTPTA 147

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +  VH      LT RE + L  +  G ++ E+A  L I+  T   +++ ++ K    
Sbjct: 148 APGAGGVHAAAVASLTARERDVLACLGAGMSNAELADALVITEATAKTHVSRVLAKLGCA 207

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A   AV   +V
Sbjct: 208 SRVQAAIVAVEAGVV 222


>gi|302518950|ref|ZP_07271292.1| response regulator [Streptomyces sp. SPB78]
 gi|302427845|gb|EFK99660.1| response regulator [Streptomyces sp. SPB78]
          Length = 217

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G L +    + +      G    L  RE + L  ++EG  + EIA  L  S  TV N +
Sbjct: 133 LGRLISQVGTLHRGNGAAGGTTLGLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVM 192

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             +  +   + R+ A+AYA+R   +
Sbjct: 193 HGLTTRLHLRNRAHAVAYALRQGYI 217


>gi|295695280|ref|YP_003588518.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295410882|gb|ADG05374.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 223

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 5/165 (3%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     L        +  +  E+   V     E++     + N          +   G
Sbjct: 58  MDLSMPQGLDGIAAAEEIKDQFPEVKVIVLTMYDEDVYLCRLLRNGVEGFLL---KQTAG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGK 201
             L+    +++  D  +E  L       M +  +     +    LT RE E L +++ G 
Sbjct: 115 ENLIQAIRQVMNGDYWFESELPKEIVDEMKQRPEPENCDEDAVILTEREREVLVFLARGY 174

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + E+A  L IS  TV N+ A++MRK    T    I Y  RN ++
Sbjct: 175 QNREVAKELNISVKTVENHKANMMRKLGVSTVRELIEYGRRNRLL 219


>gi|291007045|ref|ZP_06565018.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 175

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  +++G + +EIA  L  S  T+ N +   M++   + R+ A+AYA+R  I
Sbjct: 115 LTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILYQFMKRLGLRNRAHAVAYAIRLGI 174

Query: 246 V 246
           +
Sbjct: 175 I 175


>gi|189460662|ref|ZP_03009447.1| hypothetical protein BACCOP_01304 [Bacteroides coprocola DSM 17136]
 gi|189432621|gb|EDV01606.1| hypothetical protein BACCOP_01304 [Bacteroides coprocola DSM 17136]
          Length = 250

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            ++ S W  ++   +   +  K +    R              +      +        +
Sbjct: 74  HLIESIWEEEIFSRIHPDDLVKKHTRELRFLHFLKNALEKQRNDYYLEEYLRMCDSVGKY 133

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTG 188
                R+  ++    G I L   L+ +        ++           D +   D  L+ 
Sbjct: 134 HQVLHRMFYVIAQDTGNICLALCLYNLTEVSSIGSMIVNSADGSRIDIDTYDCSDL-LSR 192

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  I  GK+S EIA  L +S +TV+ +  +I++K      + A   A   +++
Sbjct: 193 REKEILILIGRGKSSKEIAEELSLSIHTVSRHRQNILQKLQVSNSAQAFGIARELHLL 250


>gi|27365565|ref|NP_761093.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37680289|ref|NP_934898.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|320155960|ref|YP_004188339.1| DNA-binding response regulator, LuxR family [Vibrio vulnificus
           MO6-24/O]
 gi|13641466|gb|AAK31574.1| transcriptional regulator [Vibrio vulnificus]
 gi|27361713|gb|AAO10620.1| Transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37199036|dbj|BAC94869.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319931272|gb|ADV86136.1| DNA-binding response regulator, LuxR family [Vibrio vulnificus
           MO6-24/O]
          Length = 212

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 74/213 (34%), Gaps = 26/213 (12%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
                 + M    + VG +   L   D+ ++ K D +V  D    ++  +  +   K   
Sbjct: 18  DGFMARLEMEPEIDVVGTASNGLEALDVVKQHKPD-VVLMDISMPILNGIEATRMIKA-- 74

Query: 101 VLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             + P  ++     H   E I                +    +G ML       +++  +
Sbjct: 75  --EWPEAKILMLTMHDNREYIMKV-------------MQEGAVGYMLKEISAEKMVQ-AI 118

Query: 160 WEIGLLAAY------QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
             +   + Y      Q    +       +   L+ RE   L  +++G +S +IA +L IS
Sbjct: 119 KTVNQGSTYFCESVTQTLFTQEIVPAAQRPNPLSRREEAVLKLVAQGHSSKKIATLLEIS 178

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  +  +I  K    + +    YA+   ++
Sbjct: 179 YRTVETHRHNIKHKLDLNSTAELAKYALEQGLI 211


>gi|170720829|ref|YP_001748517.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169758832|gb|ACA72148.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 219

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 8/142 (5%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---GL 164
           +     HT P+ I            L    A+     +     G   L   +        
Sbjct: 79  VLILSMHTDPDLIMRALESGAHGYLLKDATAKELEQALAALRSGERYLSPAIAHTVINQA 138

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L   Q     + D H      LT R++E L  I  GK++ EIA  L +S  TV  + + I
Sbjct: 139 LMRAQHGKQANIDRH-----NLTARQLEILRLIVRGKSTREIAAGLALSIKTVETHRSQI 193

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           M++      +G + +AVR  I+
Sbjct: 194 MKRLQIYDVAGLVLFAVREKII 215


>gi|311108335|ref|YP_003981188.1| sensory box protein 10 [Achromobacter xylosoxidans A8]
 gi|310763024|gb|ADP18473.1| sensory box protein 10 [Achromobacter xylosoxidans A8]
          Length = 497

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 2/123 (1%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW--EIGLLAAYQANMFKSYDVHWGK 182
           G   R      D+   +     L      +++D  W     +    Q            +
Sbjct: 360 GGQPRVLLAIQDITERKRSETELLTAIEAVMQDTSWFSRSVIEKLAQLREPAPATRDVAE 419

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE E L  + +G   D IA  L +SRNTV N++A+I  K     RS AI +A  
Sbjct: 420 LAQLTSREREVLGLMCQGHDDDSIARQLKLSRNTVRNHVATIYSKIGVHRRSAAIVWARD 479

Query: 243 NNI 245
             I
Sbjct: 480 RGI 482


>gi|282858615|ref|ZP_06267777.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
 gi|282588619|gb|EFB93762.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
          Length = 214

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + F+LT  E E L  I+ G T+ EIA     S +TVN +  +I RK +    + A  YA+
Sbjct: 143 ERFKLTKTETEILIDIALGMTTKEIAEKRFSSFHTVNTHRKNIFRKLSVNNANEATRYAL 202

Query: 242 RNNIV 246
           R+ ++
Sbjct: 203 RSGLI 207


>gi|290962909|ref|YP_003494091.1| response regulator [Streptomyces scabiei 87.22]
 gi|260652435|emb|CBG75568.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 288

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 1/156 (0%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM-LLFPK 150
           L+   +    L++       V   L E      G   R       V      L+      
Sbjct: 132 LTAVTRAARDLEQFLACREQVPRLLSEARAGGVGTTPRGGPARERVHEAHTELLQFTATL 191

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G   LR+   E+  L        +       +   L+ RE++ L  ++ G T+ +I+  L
Sbjct: 192 GDPRLREHFDEVCRLLEQGCCAEEPEASPPRRPTRLSPRELDVLAAVAAGCTNLDISGRL 251

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I   TV  Y+ S MRK  T TR  A+  A R  ++
Sbjct: 252 DIGLETVKGYLRSAMRKLGTTTRFEAVTAARRAGLL 287


>gi|297563287|ref|YP_003682261.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847735|gb|ADH69755.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 225

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 3/128 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          D     L   + R+  G  +L      +L   L E          
Sbjct: 94  VFGGLRAGARGYLLKDVPPEELVAAIRRVARGETVLGGPAAELLVAALGEGPSTVPAAD- 152

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    G+   L+ RE E    +  G T+ E+A  L I+  T  N++ SI+RK   +
Sbjct: 153 --PPRPPGHGEAPRLSEREEEVARLVGTGATNREVARALFITEGTAKNHVTSILRKLGLR 210

Query: 232 TRSGAIAY 239
            R+    +
Sbjct: 211 DRTRLALW 218


>gi|149927753|ref|ZP_01916005.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Limnobacter sp. MED105]
 gi|149823579|gb|EDM82809.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Limnobacter sp. MED105]
          Length = 223

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 83/218 (38%), Gaps = 14/218 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +P+   L+    PL     +   +  L E+V  +  +L    +        + S + P  
Sbjct: 1   MPSNQILVIEDHPL-----FATGIKDLVEFVATNADILCAASIA---HAKELFSKNSPAL 52

Query: 86  LVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARIR 141
           ++  + L +      +          P      ++    + + N++     L+      +
Sbjct: 53  VITDLRLPDCQGQDVIDTLALMSANLPTLIMSGDDTLLHSVVPNQHAPSWTLSKSEGFEQ 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEG 200
              +LL    R  ++ + W    L+  Q N    +  +      +LT ++ + + +++ G
Sbjct: 113 TSAVLLEALTRAGVQVQ-WRPNALSNRQTNGEHITGRLGQNNGIQLTHKQQQVMHFLASG 171

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            ++ EIA  L +S  T+  ++  I  +   K R+ A++
Sbjct: 172 LSNKEIARKLDLSPETIKTHLREIFTRMNVKNRTQAVS 209


>gi|11467319|ref|NP_043176.1| putative OmpR transcriptional regulator [Cyanophora paradoxa]
 gi|1351750|sp|P48359|YCF29_CYAPA RecName: Full=Probable transcriptional regulator ycf29
 gi|1016120|gb|AAA81207.1| putative OmpR transcriptional regulator [Cyanophora paradoxa]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 83/216 (38%), Gaps = 31/216 (14%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
             S  + +  +  +V  S  +   WD+ + +K+D I+           + +     + N 
Sbjct: 14  RNSLKLYLTEIGFHVEESTCVDQAWDILKRKKIDLIIC---------DIIMPGMGGF-NF 63

Query: 102 LQRPT----ELFCPVFHTLPENITPPAGMD-----NRYCSLTFDVARIRIGLMLLFPKGR 152
           L +          PV       +T    +      + Y S  F++  + + +        
Sbjct: 64  LHQLRLNTDYCTLPVILLTTRGLTQDRIIGYKTGCDSYISKPFNIEELVVII------EG 117

Query: 153 IILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           ++ R  L  + L    + +    KS ++        T RE   L  + EG  + +IA  L
Sbjct: 118 VLNRHTLIRLKLEKKQKNSFLLIKSNNLK----INFTPREQSVLNLVVEGLLNKQIAANL 173

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS   V  Y++ +  KT T+ R+  + YA+ NN++
Sbjct: 174 NISIRIVEKYVSRLFIKTKTRNRAELVKYALENNLI 209


>gi|254234497|ref|ZP_04927820.1| hypothetical protein PACG_00356 [Pseudomonas aeruginosa C3719]
 gi|126166428|gb|EAZ51939.1| hypothetical protein PACG_00356 [Pseudomonas aeruginosa C3719]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 146 LTERQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|219667253|ref|YP_002457688.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219537513|gb|ACL19252.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 217

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 69/181 (38%), Gaps = 8/181 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAG 125
           E+ +D  V    P  ++  + + + +    + +   +     +     H   E +     
Sbjct: 40  EEAIDR-VDDLHPDLVLLDLTMPKLNGVDCIEELLKKHADLKILVLTMHDDEEYLKAVLQ 98

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           +  +   L        +  +    +G + +   +    +     +      +    K  +
Sbjct: 99  VGAKGYVLKKAADVELLSAIRTVARGEMFIYPTMAAEFVYRHLVSPREPEKESKKLK--Q 156

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  ++ G T+ +IA +L +S  TV  Y A +M K     R+  + YA+ N I
Sbjct: 157 LSERELEVLRNLALGHTNQDIADLLHVSVKTVETYKARVMEKLEMHKRAELVRYAMENGI 216

Query: 246 V 246
           +
Sbjct: 217 I 217


>gi|326439852|ref|ZP_08214586.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 202

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
            R+G  LL       L D + E+                  G++  LT REVE L   ++
Sbjct: 96  ARVGGFLLKEAPPARLADAVREVSAGKRVIDPQLALAAFDNGEN-PLTPREVEVLRMAAD 154

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G  + EIAV L +S  TV NY+ +I+ K   + R  AI  A  + 
Sbjct: 155 GAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARESG 199


>gi|320094467|ref|ZP_08026245.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319978600|gb|EFW10165.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 243

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 13/172 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF----------D 136
           V+   +   +    ++   T     +  T   + +   G+D                   
Sbjct: 58  VQMPVMDGIEATRRLVDEGTASRIVILTTFNTDDSVLRGIDAGASGFLLKTTPPAGLFDA 117

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL--LAAYQANMFKSYDVHWG-KDFELTGREVEC 193
           V  +  G  ++ P     L   L   G   LAA       + D     +   LTG+EVE 
Sbjct: 118 VRTVHSGDSVISPGPTSTLLRALRAPGAPPLAAVPTPADAAADGRGILERAGLTGKEVEI 177

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  I+ G T+ EI     +S  TV  ++  ++ KT  + R   +  A+R  +
Sbjct: 178 LRLIARGLTNQEICDAQWVSMATVKTHVGHLLAKTGARDRVQLVLLALRAGL 229


>gi|218295514|ref|ZP_03496327.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
 gi|218244146|gb|EED10672.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
          Length = 192

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 32/190 (16%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENI 120
           +   +  QE    ++     P  ++  + +   D       L+         F T  +  
Sbjct: 28  VAEAENGQEALDKALALK--PDAVLLDLRMPGMDGLTCARKLRERGYRGLIAFLTTYQEP 85

Query: 121 TP----PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y S       ++  L+ +      +    L                 
Sbjct: 86  ALLKEAALAGADAYFSKELSAPELKRRLLRVMQGEERLTPPDLPS--------------- 130

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE E L  +++G +  E+A  LG+S +TV +++ ++  K   + R  A
Sbjct: 131 ---------LTPREGEVLALLAQGLSVKEMAKALGLSPDTVKDHLENLYAKLEARNRVEA 181

Query: 237 IAYAVRNNIV 246
           +  A     +
Sbjct: 182 LEKARSLGFL 191


>gi|116695286|ref|YP_840862.1| LuxR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529785|emb|CAJ96132.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16]
          Length = 924

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 14/102 (13%)

Query: 154 ILRDRLWEIG------LLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTS 203
           + +DRL E+       L A + A   +        +      L+ REVE L +++ G ++
Sbjct: 812 LQQDRLAEVEPWYVRRLCAGFDAPASEPDAADDQAEPVAASRLSAREVEILDYVARGLSN 871

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  + ++  TV  ++ +I  K    +R  A+    R+ +
Sbjct: 872 KEIARAIRVAPETVKWHLKNIFEKLKVNSRIQAV----RSGL 909


>gi|42527826|ref|NP_972924.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|41818654|gb|AAS12843.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
          Length = 217

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +F L+ +E+E +  +SEG ++ +IA   G+S  T+ N I+ I  KT    R+   A+A +
Sbjct: 154 EFGLSQKEIEIIRLVSEGLSNKQIAYKQGLSEGTIKNNISVIFDKTFVSDRTQLAAFAFK 213

Query: 243 NNIV 246
           N IV
Sbjct: 214 NGIV 217


>gi|29654353|ref|NP_820045.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA
           493]
 gi|161830925|ref|YP_001596685.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331]
 gi|29541620|gb|AAO90559.1| response regulator [Coxiella burnetii RSA 493]
 gi|161762792|gb|ABX78434.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331]
          Length = 214

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 11/159 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
             +  +    +L+R   +   +   +  ++ P   ++     + + + D   +   +  +
Sbjct: 59  DTNGLELSRKLLRRDATIKILMVTGMEGDLLPMRLLEVGVRGFITKSSDTTELEQAIRAV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +   R I       + L         K+         +L+ RE+E L  +++GK ++ IA
Sbjct: 119 YKGQRYISSAIANRLAL--------SKTTTAATCPFKKLSDREMEVLLLLAKGKKAEAIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L I+  TVN++   I  K   K     I  AV+  +V
Sbjct: 171 KQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQYGLV 209


>gi|50120831|ref|YP_049998.1| transcriptional regulator NarP [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611357|emb|CAG74804.1| nitrate/nitrite response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE++ L  ++ G ++ +IA +L IS  TV  +I +++RK   ++R  A  
Sbjct: 150 LTERELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNMLRKLNVRSRVAATV 202


>gi|325697781|gb|EGD39665.1| two component system response regulator [Streptococcus sanguinis
           SK160]
 gi|332358540|gb|EGJ36364.1| two component system response regulator [Streptococcus sanguinis
           SK1056]
          Length = 227

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 67/169 (39%), Gaps = 6/169 (3%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFD 136
           P  ++  + +   D       V ++  ++   +  T  ++    + +    + Y      
Sbjct: 48  PDVILMDIRMPVMDGVLCTKAVKEQYPDVKIIILTTFDDDEFIFSALKYGASGYILKGVS 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  ++  G +I  +   ++  + +  A    +  V      +++  E + +  
Sbjct: 108 TEELHEAIQTVYRGGAMINPNIATKVFKIFSQMAQSNFAITVTEENIEDMSRTEWKIIQQ 167

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I  G ++ EIA  L +S  TV NY++ I+ K   + R+    +AV+  +
Sbjct: 168 IGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQTGV 216


>gi|295690124|ref|YP_003593817.1| LuxR family two component transcriptional regulator [Caulobacter
           segnis ATCC 21756]
 gi|295432027|gb|ADG11199.1| two component transcriptional regulator, LuxR family [Caulobacter
           segnis ATCC 21756]
          Length = 201

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 28/218 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           MI +       M + AL+  +     + V       ++  ++V ++ P  L+  + +   
Sbjct: 1   MIRVVIAEDQKMVLGALSALLEMEGDIQVVGRAADGEQAMTLVQAEKPDVLISDIEMPGM 60

Query: 96  DKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                  +   E      L    F                Y       + +   +  +  
Sbjct: 61  TGIDVATRLKAEGAGTRVLIVTTFGRPGYLRRALDAGVKGYLLKDGPSSVLAAAVRTVAA 120

Query: 150 KGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            GR I   L + +W+                    +   LT RE E L    EG+++ +I
Sbjct: 121 GGRAIAPELSEAIWD-------------------AEPDPLTDREREILRLAEEGRSNKDI 161

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A +L +S  TV NY++   +K     R  A   A  N 
Sbjct: 162 AEVLELSPGTVRNYLSEAAQKLGAANRVEAGRIARSNG 199


>gi|237713861|ref|ZP_04544342.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262409230|ref|ZP_06085774.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|294645794|ref|ZP_06723478.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294809468|ref|ZP_06768172.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446017|gb|EEO51808.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262352977|gb|EEZ02073.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|292638873|gb|EFF57207.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294443340|gb|EFG12103.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 255

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI     + 
Sbjct: 193 NLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQESG 252

Query: 245 IV 246
           ++
Sbjct: 253 LL 254


>gi|161505853|ref|YP_001572965.1| hypothetical protein SARI_04030 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867200|gb|ABX23823.1| hypothetical protein SARI_04030 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 229

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 2/136 (1%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII-LRDRLWE 161
           +   EL        PE       M+     L   +      ++          L      
Sbjct: 88  EFCRELLQKTARLFPEVRIIITAMEGSQRWLHEMMQFNVQAVVPRDSDAETFALALNTVS 147

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            G++     +   S ++       L+ R+ E L  ++ G+++ +I   L IS  TV  ++
Sbjct: 148 RGMM-FLPGDWLNSTELASRDIKALSARQREILKMLAAGESNKQIGRALNISTGTVKAHL 206

Query: 222 ASIMRKTATKTRSGAI 237
            S+ R+   K R+ A 
Sbjct: 207 ESLYRRLDVKNRTQAA 222


>gi|29347298|ref|NP_810801.1| LuxR family transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572832|ref|ZP_04850231.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|29339197|gb|AAO76995.1| transcriptional regulator, LuxR family [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837564|gb|EES65656.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 258

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 32/74 (43%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S          LT RE E L  I +G  S EIA  L +S +TVN +  +++RK   + 
Sbjct: 184 MFSPSPSLQTFNPLTKREAEILRLIQKGLLSKEIADKLCVSIHTVNIHRQNLLRKLGVQN 243

Query: 233 RSGAIAYAVRNNIV 246
              AI       I+
Sbjct: 244 SIEAIRIGYETGIL 257


>gi|88807300|ref|ZP_01122812.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
 gi|88788514|gb|EAR19669.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
          Length = 228

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 79/216 (36%), Gaps = 23/216 (10%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
           I L     + +R +  +     S   L+   +  E+   S    D  F+L+ C  + EK 
Sbjct: 28  IALAMKGRFFLRCFCES----FSEKSLIGCAVTDEESCLSYFKMD-SFELLLCTDMLEKG 82

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
             + + ++  EL             P   +     S    V       +        I+ 
Sbjct: 83  NGFELARKAREL------------QPDLKVVVLALSDAIPVEYDNASWLEAVVAEADIIE 130

Query: 157 DRLW-EIGLLA-----AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           DR   E  +LA     +Y++   +S ++ +     LT RE E L  ++ G +  EIA  L
Sbjct: 131 DRKPLEAAVLAVMGDHSYRSPSLRSDELPYLSCPRLTPREYEVLDRLARGMSDREIAEDL 190

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  T   Y   ++R      R  A+   +R  +V
Sbjct: 191 IVTEETARTYTKRLLRTLEVNNRVQAVLKGMRCGMV 226


>gi|288927298|ref|ZP_06421145.1| transcriptional regulator [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330132|gb|EFC68716.1| transcriptional regulator [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 168 YQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           + A + +  D  W +    +LT  E+E L  I+ G T+ EIA     S +TVN +  +I 
Sbjct: 123 HYAPLVQMADEQWQEVERVKLTKTEMEVLRDIALGLTTKEIAEKRFSSFHTVNTHRKNIF 182

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK        A  YA+R  +V
Sbjct: 183 RKLNVNNVHEATKYALRAGMV 203


>gi|237708501|ref|ZP_04538982.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|237723973|ref|ZP_04554454.1| transcriptional regulator [Bacteroides sp. D4]
 gi|229437637|gb|EEO47714.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|229457430|gb|EEO63151.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
          Length = 206

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 159 LWEIGLLAAYQANMFKSY---DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISR 214
           + +I  L  Y     K      +H  K + EL+ RE+E L  I++G  + EIA  L IS 
Sbjct: 110 IKDIHQLRQYGHQARKQAVDKAMHIEKTEHELSIREIEVLILITKGLINKEIADKLHISL 169

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV ++  +I  K   K+ SG   YAV N  +
Sbjct: 170 TTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 201


>gi|224026836|ref|ZP_03645202.1| hypothetical protein BACCOPRO_03593 [Bacteroides coprophilus DSM
           18228]
 gi|224020072|gb|EEF78070.1| hypothetical protein BACCOPRO_03593 [Bacteroides coprophilus DSM
           18228]
          Length = 216

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 39/99 (39%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             + R  L +       L    A   K           LT  E E L  ++ GK++ +IA
Sbjct: 111 LKEIRECLTEATEGRPYLTGKVAAWLKQSGKTTDAVSPLTTTEKEILRAMALGKSTKDIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               +S  TV  +  +I RK        AI +A+R+ +V
Sbjct: 171 SERFLSIYTVMTHRKNIFRKLGVNNAHEAIRHALRSGLV 209


>gi|91223978|ref|ZP_01259241.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus
           12G01]
 gi|91190889|gb|EAS77155.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus
           12G01]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 14/132 (10%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANMFKS 175
                G + R   LT   +   I  ++       +L     D L E+ L  A+Q +   S
Sbjct: 70  ALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVEL-LKQAHQGDKAYS 128

Query: 176 YDVH---------WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +V                LT RE + L  ++ G  + +IA  L IS +TV  ++ S+++
Sbjct: 129 QEVSKYLSERSEQEDVFDTLTDRESQILREVARGFRNKQIADRLFISESTVKVHMKSLLK 188

Query: 227 KTATKTRSGAIA 238
           K    +R+ A  
Sbjct: 189 KLQVPSRTAATV 200


>gi|326387030|ref|ZP_08208640.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208211|gb|EGD59018.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 306

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 152 RIILRDRLWEIGLLAAYQANMF---------KSYDVHWGKDFELTGREVECLTWISEGKT 202
           RI   D   E+ L+A Y+ N           +           LT RE E L WIS GK+
Sbjct: 203 RIENGDWSLELVLIAQYRENEVLIRLNELDPQGDANRLQSRLGLTEREAEVLLWISYGKS 262

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKT 232
           + +I+ +L IS  TV  ++  I  K   +T
Sbjct: 263 NADISDVLAISPRTVQKHLERIYEKLGVET 292


>gi|311693703|gb|ADP96576.1| two component transcriptional regulator, LuxR family [marine
           bacterium HP15]
          Length = 221

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 9/176 (5%)

Query: 72  QKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGMD 127
           + L + V S    DLV   + +     +  ++    +   L   V     E       +D
Sbjct: 38  KALQAAVESHPDADLVLLDLNMPGAHGFSGLVFMRGQYPGLPVVVVSGSEELQVMRRSID 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                     A     L  +    + +L   +W    +A     M         K   LT
Sbjct: 98  YGASGFIPKSAP----LPTITEAIQAVLEGDVWLPQGVADKIERMHSDATDFSEKLASLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++   L  ++EG  + +IA  L +S  T+  +I ++ RK   + R+ A+  A++ 
Sbjct: 154 PQQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFRKLGVRNRTQAVI-AIQQ 208


>gi|302557405|ref|ZP_07309747.1| response regulator [Streptomyces griseoflavus Tu4000]
 gi|302475023|gb|EFL38116.1| response regulator [Streptomyces griseoflavus Tu4000]
          Length = 231

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 2/110 (1%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             R+   ++        +  D L    L++       ++          LT RE + L  
Sbjct: 124 AQRLLQAVIAASRGDGDLPADLLGR--LMSQVGTLQRRAAGNTGAPVTGLTAREADVLRL 181

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG  + EIA  L  S  TV N +  +  +   + R+ A+AYA+R   +
Sbjct: 182 VAEGLDTTEIAAKLAYSERTVKNVLHGLTTRLHLRNRAHAVAYALREGFI 231


>gi|241554181|ref|YP_002979394.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240863487|gb|ACS61149.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 214

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  I  G+++ EIA  LGI+  T   +  ++ +K    T +G I YA+ + 
Sbjct: 149 PLTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGIATTAGLIRYALDHG 208

Query: 245 IV 246
           IV
Sbjct: 209 IV 210


>gi|154252773|ref|YP_001413597.1| two component LuxR family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156723|gb|ABS63940.1| two component transcriptional regulator, LuxR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 210

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D +L+ R+ E L  ++ G T+ EI   LGIS  T   ++++++R     +RS A   A
Sbjct: 147 ESDVQLSPRQREVLKLVAAGMTNKEIGRELGISPVTARMHVSALLRTLGVASRSAAAGVA 206

Query: 241 VR 242
           ++
Sbjct: 207 MK 208


>gi|85711562|ref|ZP_01042620.1| two-component system regulatory protein [Idiomarina baltica OS145]
 gi|85694714|gb|EAQ32654.1| two-component system regulatory protein [Idiomarina baltica OS145]
          Length = 212

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +D        + +L      S  L +       ++  +++ S  P  ++  + +
Sbjct: 1   MIRVLLVDDQTLIRQGLESLLT---MSDALTICGQASDGEEAINVIDSVQPDVVLMDIRM 57

Query: 93  SEKDKYYNVLQRPTELF--CPVFHTLPENITP-----PAGMDNRYCSLTFDVARIRIGLM 145
              D      +   +     P+      +         A     Y      +  +   + 
Sbjct: 58  PRMDG-IEATRHLRQTHPQLPILILTTFDDHELIIKAIAAGAKGYLLKDVSLETLVDAIR 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            L   G  +       I  + +   N  K+  V       LT +E+  L  ++ G ++ E
Sbjct: 117 ALVDGGTWLQPAITERI--VNSLTHNTNKTAPVLIE---PLTDKELAVLRLMAAGLSNQE 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L  S  T+ N ++SIM K     R+ A+  A+   ++
Sbjct: 172 IADSLFKSTGTIKNQVSSIMAKLGVHDRTRAVLKAIDLGVL 212


>gi|83943530|ref|ZP_00955989.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. EE-36]
 gi|83845762|gb|EAP83640.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. EE-36]
          Length = 213

 Score = 80.4 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +  +L          +     L+  + ++ +GL  + P               +A     
Sbjct: 89  IVSSLSAGADGYLLKETEAAVLSRQLTQLSMGLPAISPS--------------VARRIME 134

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F+        D  LT RE E LT IS+G  + E+A  L I+  TV  YI  + RK    
Sbjct: 135 HFRLTGPVASLDGRLTERETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGIS 194

Query: 232 TRSGAIAYAVRNNI 245
           +R+ A  +A R  +
Sbjct: 195 SRAEAAWHANRLGL 208


>gi|298482318|ref|ZP_07000505.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
 gi|298271605|gb|EFI13179.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
          Length = 255

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI     + 
Sbjct: 193 NLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQESG 252

Query: 245 IV 246
           ++
Sbjct: 253 LL 254


>gi|254387192|ref|ZP_05002459.1| hypothetical protein SSAG_06761 [Streptomyces sp. Mg1]
 gi|194346004|gb|EDX26970.1| hypothetical protein SSAG_06761 [Streptomyces sp. Mg1]
          Length = 90

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E    ++EG T+  IA  L +S  TV+ +++ I RKT   TRS   A   R+
Sbjct: 31  LTPREHEIAALVAEGLTTPAIAARLYLSPRTVDTHLSHIFRKTGVTTRSALAALTARH 88


>gi|157150357|ref|YP_001451161.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075151|gb|ABV09834.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 227

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 67/169 (39%), Gaps = 6/169 (3%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFD 136
           P  ++  + +   D       V ++  ++   +  T  ++    + +    + Y      
Sbjct: 48  PDVILMDIRMPVMDGVLCTKAVKEQYPDVKIIILTTFDDDEFIFSALKYGASGYILKGVS 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  ++  G +I  +   ++  + +  A    +  V      +++  E + +  
Sbjct: 108 TEELHEAIQTVYRGGAMINPNIATKVFKIFSQMAQSNFAITVTEENVEDMSRTEWKIIQQ 167

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I  G ++ EIA  L +S  TV NY++ I+ K   + R+    +AV+  +
Sbjct: 168 IGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQTGV 216


>gi|160885020|ref|ZP_02066023.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483]
 gi|156109370|gb|EDO11115.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483]
          Length = 200

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
             +   L  D  + ++  + +              + L      + +   D+      + 
Sbjct: 71  KRKTIVLASDSPQFQLSGVPVLNIHESEEELVKNILKLHQHAHHDGYPVKDMSPMPPMQP 130

Query: 186 ----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV
Sbjct: 131 HQEILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAV 190

Query: 242 RNNIV 246
            N  +
Sbjct: 191 MNGYI 195


>gi|52082321|ref|YP_081112.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52787713|ref|YP_093542.1| hypothetical protein BLi04036 [Bacillus licheniformis ATCC 14580]
 gi|52005532|gb|AAU25474.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52350215|gb|AAU42849.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 210

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D     D  LT  E++ L  ++ GKT+ EIA  L +S   V  +++ I +K    +R 
Sbjct: 135 RLDSDLSVDEHLTDTELDILQKVASGKTNKEIAADLQMSTRNVEYHLSKIYKKLKVTSRY 194

Query: 235 GAIAYAVRNNIV 246
            A+      N++
Sbjct: 195 CAVKKGTMLNLI 206


>gi|298385200|ref|ZP_06994759.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14]
 gi|298262344|gb|EFI05209.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14]
          Length = 258

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 32/74 (43%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S          LT RE E L  I +G  S EIA  L +S +TVN +  +++RK   + 
Sbjct: 184 MFSPSPSLQTFSPLTKREAEILRLIQKGLLSKEIADKLCVSIHTVNIHRQNLLRKLGVQN 243

Query: 233 RSGAIAYAVRNNIV 246
              AI       I+
Sbjct: 244 SIEAIRIGYETGIL 257


>gi|271962179|ref|YP_003336375.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505354|gb|ACZ83632.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          +     L+  +     G  L+ P              LL+A+  +
Sbjct: 93  VYAALRAGARGFLLKNAGAEMLSQAIHAAANGDALIAPSITA---------RLLSAFAGS 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S      +   LT RE + L  ++ G+T+ EIA    IS +TV ++IAS+M K   +
Sbjct: 144 GPVSPPAKPVE--TLTDREEQILATVARGRTNSEIADEFYISLSTVKSHIASLMAKLGAR 201

Query: 232 TRSGAIAYAVRNN 244
            R     +A   N
Sbjct: 202 NRVEIAMWAYETN 214


>gi|226364986|ref|YP_002782769.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243476|dbj|BAH53824.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 223

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
             + R      LA   A   +      G    L+GRE E L  I+ G++   IA  L ++
Sbjct: 132 CAQGRDVLPASLAVGLAGEVRRRSEPAGP--VLSGREKEVLALIARGQSIPTIAGELYLA 189

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TV  ++  +  K     R+ A+A A+R  ++
Sbjct: 190 PSTVKTHVQRLYEKLGVSDRAAAVAEAMRRGLL 222


>gi|226225820|ref|YP_002759926.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089011|dbj|BAH37456.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 213

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 26/213 (12%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-DWP----FDLVRCMALS 93
           +   ++  +R+    + VG +        L + ++ D ++   + P     + +R +   
Sbjct: 16  VRRGLAVLLRLDGRHDVVGEAGTGEAAVPLIEAERPDLVILDLNMPGIDGLETLRRVRAK 75

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                  VL    E    V   L          D+    L F +  +  G   L      
Sbjct: 76  GLTTRVLVLSMHDETHL-VGQALSAGADGYLLKDSMDDELFFAIESVLRGQRYLAA---A 131

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           I R RL E  +                 +   LT RE E L  I+ G T+  +A  L IS
Sbjct: 132 IDRARLQESRM-----------------RPVSLTAREREVLQLIANGLTTSAVAEALNIS 174

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +T   + A++M+K     +   +  A    ++
Sbjct: 175 PHTATRHRANLMQKLNVHNQVELVRIAASQGLI 207


>gi|125717095|ref|YP_001034228.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|262283716|ref|ZP_06061480.1| two-component response transcriptional regulator [Streptococcus sp.
           2_1_36FAA]
 gi|323353591|ref|ZP_08088124.1| two component system response regulator [Streptococcus sanguinis
           VMC66]
 gi|125497012|gb|ABN43678.1| Two-component system transcriptional regulator (CheY domain and
           HTH-like DNA-binding domain), putative [Streptococcus
           sanguinis SK36]
 gi|262260562|gb|EEY79264.1| two-component response transcriptional regulator [Streptococcus sp.
           2_1_36FAA]
 gi|322121537|gb|EFX93300.1| two component system response regulator [Streptococcus sanguinis
           VMC66]
 gi|324990443|gb|EGC22381.1| two component system response regulator [Streptococcus sanguinis
           SK353]
 gi|324992278|gb|EGC24200.1| two component system response regulator [Streptococcus sanguinis
           SK405]
 gi|324994360|gb|EGC26274.1| two component system response regulator [Streptococcus sanguinis
           SK678]
 gi|325688533|gb|EGD30550.1| two component system response regulator [Streptococcus sanguinis
           SK72]
 gi|325689555|gb|EGD31560.1| two component system response regulator [Streptococcus sanguinis
           SK115]
 gi|325693874|gb|EGD35793.1| two component system response regulator [Streptococcus sanguinis
           SK150]
 gi|327459586|gb|EGF05932.1| two component system response regulator [Streptococcus sanguinis
           SK1]
 gi|327466995|gb|EGF12509.1| two component system response regulator [Streptococcus sanguinis
           SK330]
 gi|327473049|gb|EGF18476.1| two component system response regulator [Streptococcus sanguinis
           SK408]
 gi|327490831|gb|EGF22612.1| two component system response regulator [Streptococcus sanguinis
           SK1058]
 gi|328945374|gb|EGG39527.1| two component system response regulator [Streptococcus sanguinis
           SK1087]
 gi|332358394|gb|EGJ36219.1| two component system response regulator [Streptococcus sanguinis
           SK49]
 gi|332364228|gb|EGJ42003.1| two component system response regulator [Streptococcus sanguinis
           SK1059]
 gi|332364532|gb|EGJ42303.1| two component system response regulator [Streptococcus sanguinis
           SK355]
          Length = 227

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 67/169 (39%), Gaps = 6/169 (3%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFD 136
           P  ++  + +   D       V ++  ++   +  T  ++    + +    + Y      
Sbjct: 48  PDVILMDIRMPVMDGVLCTKAVKEQYPDVKIIILTTFDDDEFIFSALKYGASGYILKGVS 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  ++  G +I  +   ++  + +  A    +  V      +++  E + +  
Sbjct: 108 TEELHEAIQTVYRGGAMINPNIATKVFKIFSQMAQSNFAITVTEENIEDMSRTEWKIIQQ 167

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I  G ++ EIA  L +S  TV NY++ I+ K   + R+    +AV+  +
Sbjct: 168 IGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQTGV 216


>gi|94499701|ref|ZP_01306238.1| two-component system regulatory protein [Oceanobacter sp. RED65]
 gi|94428455|gb|EAT13428.1| two-component system regulatory protein [Oceanobacter sp. RED65]
          Length = 211

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+  E + L  ++ G +++EIA  +  ++ TV N I+SI+ K   + R+ A+  A+  
Sbjct: 149 IELSTSETQVLRLVAAGYSNNEIASTVFKAQGTVRNQISSILEKLDVRDRTQAVMRAIEL 208

Query: 244 NIV 246
            ++
Sbjct: 209 GLI 211


>gi|94501729|ref|ZP_01308243.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Oceanobacter sp. RED65]
 gi|94426129|gb|EAT11123.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Oceanobacter sp. RED65]
          Length = 198

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 36/74 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +  YD+    + ELT R+ E L  +++G  +  I   L +S  TV  ++ +I       T
Sbjct: 125 YFPYDLSNIPNIELTPRQREVLQLLAQGLPNKAICRELNMSEATVKTHLRTIFALLNVNT 184

Query: 233 RSGAIAYAVRNNIV 246
           R+  +  A + +++
Sbjct: 185 RTQCVNVAQQYSLI 198


>gi|83646727|ref|YP_435162.1| transcriptional regulator NarL [Hahella chejuensis KCTC 2396]
 gi|83634770|gb|ABC30737.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 212

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 16/134 (11%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----------------L 165
             AG+D+R   LT       +           +L+D   E  L                L
Sbjct: 73  RAAGVDSRIIMLTVSDNEADVVNCFRAGADGYLLKDMEPEDILEKIKQVTLGKMAISERL 132

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               A+  +           LT RE E LT I++G ++  IA  L IS  TV  ++  I+
Sbjct: 133 TEILASALRKPVEAADPSASLTSREYEILTRIAQGHSNKVIARDLNISDGTVKVHVKHIL 192

Query: 226 RKTATKTRSGAIAY 239
           +K   ++R  A  +
Sbjct: 193 KKMGMRSRVEAAVW 206


>gi|326331580|ref|ZP_08197870.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium
           Broad-1]
 gi|325950836|gb|EGD42886.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium
           Broad-1]
          Length = 297

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 137 VARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             R  +   L    G+++  D R     ++    A   +           L  RE++ L 
Sbjct: 186 AERREMAAELTDLAGQVMDPDVRSRLEAMVLRLTAAPGEKRPAQLVPAVRLAAREIDVLR 245

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ E A  LGI  +TV +Y+ S  RK     R  A+  A    ++
Sbjct: 246 QVALGNSNREAAEALGIVESTVKSYLKSATRKLNANNRVHAVRMAREAGLI 296


>gi|315608347|ref|ZP_07883336.1| transcriptional regulator [Prevotella buccae ATCC 33574]
 gi|315249977|gb|EFU29977.1| transcriptional regulator [Prevotella buccae ATCC 33574]
          Length = 222

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L+ +++GK + EI   L I   TV  +  +I  K   K+ S    YAV    
Sbjct: 157 LTDREIEVLSLVAQGKINKEIGETLNIGLTTVITHRKNIQEKLGLKSVSALTIYAVMRGY 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|290956373|ref|YP_003487555.1| response regulator [Streptomyces scabiei 87.22]
 gi|260645899|emb|CBG68990.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 299

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 133 LTFDVARIRIGLMLLFPK-GRIILRDRLWEI-GLLAAYQANMFKSYDV-----HWGKDFE 185
              +V      L  L P+     LR  L  + G LA   A+   +          G+   
Sbjct: 178 AWEEVREAHGALRALAPRIDDPGLRAELLRVCGRLAGASASGEDAAGPAAPVRDGGERVA 237

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  ++ G T+   A  LG+   TV  Y+ S MRK    TR  A+  A R  +
Sbjct: 238 LTAREVDVLACVAMGATNAVAAQRLGLRPETVKAYLRSAMRKLGAHTRLEAVVAARRAGL 297

Query: 246 V 246
           +
Sbjct: 298 L 298


>gi|325298451|ref|YP_004258368.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
 gi|324318004|gb|ADY35895.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
          Length = 202

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D        L+ RE E +  +  G T+ EIA  L IS +TV  +  +I RK    + +G
Sbjct: 123 SDDEEDDQDALSQREKEIICCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIHSAAG 182

Query: 236 AIAYAVRNNIV 246
              YA+ N +V
Sbjct: 183 LTIYAIVNKLV 193


>gi|312278646|gb|ADQ63303.1| Two-component system transcriptional regulator (CheY domain and
           HTH-like DNA-binding domain), putative [Streptococcus
           thermophilus ND03]
          Length = 200

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +     +  L+ RE E L  +++G T+ EIA  L +S  T+ NY+ +
Sbjct: 117 VLAGQKEYSPELVEGVAFDNNPLSQREQEVLAMVAQGSTNQEIAESLFLSNGTIRNYMTA 176

Query: 224 IMRKTATKTRSGAIAYA 240
           I+ K     R+ A+  A
Sbjct: 177 ILTKLDAGNRTDAVRIA 193


>gi|302536960|ref|ZP_07289302.1| response regulator [Streptomyces sp. C]
 gi|302445855|gb|EFL17671.1| response regulator [Streptomyces sp. C]
          Length = 217

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 6/134 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          D     L   V  +  G  L+ P    + R  + E     A +A 
Sbjct: 90  VFGALRAGAAGFLLKDADAAELIAAVRTVARGEGLIAP---AVTRRLIAEFAAPKAVRAP 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +             LT RE E L  + EG ++ EIAV L ++  TV  +++ ++ K   +
Sbjct: 147 VRPGAAAAVE---SLTRREREVLGALGEGLSNAEIAVRLDMAEATVKTHVSRLLGKLELR 203

Query: 232 TRSGAIAYAVRNNI 245
           +R  A   A    I
Sbjct: 204 SRVQAAVLAQELGI 217


>gi|229189937|ref|ZP_04316947.1| Response regulator [Bacillus cereus ATCC 10876]
 gi|228593611|gb|EEK51420.1| Response regulator [Bacillus cereus ATCC 10876]
          Length = 212

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++  G+ 
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVY-NGQT 123

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +++D +     L   ++N+ +S +  +  D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 124 VMQDVI-----LDKIKSNLMESKEEEFKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|134101943|ref|YP_001107604.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133914566|emb|CAM04679.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 156

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  +++G + +EIA  L  S  T+ N +   M++   + R+ A+AYA+R  I
Sbjct: 96  LTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILYQFMKRLGLRNRAHAVAYAIRLGI 155

Query: 246 V 246
           +
Sbjct: 156 I 156


>gi|55980999|ref|YP_144296.1| response regulator [Thermus thermophilus HB8]
 gi|55772412|dbj|BAD70853.1| response regulator [Thermus thermophilus HB8]
          Length = 192

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG ++ EIA  L +S  TV +++ S+  K   + R  A++ A     
Sbjct: 131 LTPREEEVLRLLAEGLSTKEIARALRLSPETVRSHLESLYAKLEARNRVEALSRARSLGF 190

Query: 246 V 246
           +
Sbjct: 191 L 191


>gi|296187029|ref|ZP_06855429.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|296048467|gb|EFG87901.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 219

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDV 178
           I      +N +             L     +  +   +R++E      +Y  +   + D 
Sbjct: 82  IIVDFYENNEFFVKALKSGVQGYVLGKSNEEEILYAIERVYEGKKYFDSYFVDSIINKDT 141

Query: 179 HWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 EL T RE E L  +++G ++ +I+    I+ NTV  +I  I+ K   K R+ A 
Sbjct: 142 DLPNKLELLTNREREILIEVAKGLSNPKISEKFFITENTVKKHINHILNKLNIKDRTEAA 201

Query: 238 AY 239
            Y
Sbjct: 202 LY 203


>gi|269961289|ref|ZP_06175655.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833955|gb|EEZ88048.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 214

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G +++++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 152 VDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|209515667|ref|ZP_03264531.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
 gi|209503903|gb|EEA03895.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
          Length = 489

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  IS G ++ EIA  L +S +TV  ++ S+ RK    TR+ A        +
Sbjct: 429 LSARETDVLRAISLGASNKEIARELTLSPSTVRTHVESVFRKLGCSTRAAATLKGSTMGL 488

Query: 246 V 246
           +
Sbjct: 489 L 489


>gi|116049343|ref|YP_791854.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390239|ref|ZP_06879714.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106385|ref|ZP_07792620.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|115584564|gb|ABJ10579.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879122|gb|EFQ37716.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 210

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 146 LTERQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|333025269|ref|ZP_08453333.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745121|gb|EGJ75562.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 233

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 2/155 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L   +++  VL          F          AG    +   + D   +  G+  L   
Sbjct: 75  GLGAAEEFARVLPGTAVGMLTTFSEGEYVERALAGGAAGFLLKSGDPYELIAGVRALAAG 134

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  +       +  L        +           LT RE E L  ++ G ++  IA  L
Sbjct: 135 GAFLAPRVTRHV--LDGLGGRRLERAAGARRAVARLTPREREVLVLLAGGLSNAGIAERL 192

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G+S  TV  Y++ ++ +     R  A   A    +
Sbjct: 193 GLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 227


>gi|307331693|ref|ZP_07610799.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306882672|gb|EFN13752.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 302

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 69/190 (36%), Gaps = 7/190 (3%)

Query: 61  FLLVRWDLF-QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
           +  +R  L   ++ L + V S      +  +  SE  +   V +    L         + 
Sbjct: 115 YGALRQPLVLGDRALTAAVES---ARELERVLESELAQELAVREEAQRLLTEARQRRGQP 171

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLA-AYQANMFKSY 176
             P          +  +V      L  L  +   R +  + L     LA A         
Sbjct: 172 PGPQWEPSAEETEVWEEVREAHGDLRALAHRVPDRELREEILTACSRLARASSGRGRHRE 231

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             + G   EL+ REV+ L  ++ G T+   A  LG+   TV +Y+ S MRK    TR  A
Sbjct: 232 HRNGGGGVELSPREVDVLACVASGATNSTAAERLGLRPETVKSYLRSSMRKLGAHTRLHA 291

Query: 237 IAYAVRNNIV 246
           +  A R  ++
Sbjct: 292 VVEARRAGLL 301


>gi|269864222|ref|XP_002651497.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348]
 gi|220064414|gb|EED42559.1| transcriptional regulatory protein [Enterocytozoon bieneusi H348]
          Length = 206

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS-GAIAYAVR 242
           +LT R+ E    I++GKT+ EIA  L IS  TV  +++S++R      R+  A  +A R
Sbjct: 145 KLTSRQREVWHLIAQGKTNKEIAAELEISPYTVRIHVSSLIRALNVPNRAVAAARFAGR 203


>gi|207722498|ref|YP_002252934.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2]
 gi|206587679|emb|CAQ18261.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2]
          Length = 252

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 18/179 (10%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAG 125
           +D +V+ D+P + +  +  +       +++R      PV+         T P  +     
Sbjct: 53  MDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWLSTRRPVYFDAASPWEGTDPVWLEKFVK 112

Query: 126 MDNRYCSL--TFDVAR---IRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKS 175
            D R C+    FD A           L       L   L ++     G L    A++ + 
Sbjct: 113 HDLRNCAADAVFDEANCVGTYFSFHALPTVEEGCLDATLRDLTPALHGALLRAVASVERD 172

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                     LT RE E    I +G+++ EIA ++  S +TV +Y++SIM KT  + R 
Sbjct: 173 LQQASQALATLTEREREVALLIGQGRSNAEIAQVVCRSESTVKHYLSSIMDKTGCENRV 231


>gi|298241311|ref|ZP_06965118.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554365|gb|EFH88229.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 214

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 12/164 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143
           ++   ++  +    +L     +   V     ++ +  A M      Y     D   +   
Sbjct: 57  IKMPGINGIEATRRILHTSPHMKVLVVTMFEDDDSVFAAMRAGARGYLLKDADQDELLRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGK 201
           +  +     I           +A    + F +           +LT RE E L  I++G+
Sbjct: 117 VKAVSRGEAIFSP-------AIAQRMIHYFSALPQTASAIAFPDLTEREREILLLIAQGE 169

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++  IA    +S  TV N++++I  K     R+ AI  A    +
Sbjct: 170 SNAAIAKHFTLSLKTVQNHVSNIFSKLQVADRAQAIVRARDAGL 213


>gi|255657144|ref|ZP_05402553.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-23m63]
          Length = 200

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + I  D L +  LL  YQ       +       +LT  E   L  I  GK    IA  L
Sbjct: 102 NKNISPDSLID-SLLKVYQGGTCFPSENTEVIIEDLTSMEKRILQLICSGKKRKIIADEL 160

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  T++N++  I  K    +   AI  A++   +
Sbjct: 161 YISERTLSNHLQHIYDKLDVSSSVEAITKAIQMGYI 196


>gi|209546605|ref|YP_002278523.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537849|gb|ACI57783.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I YA+ + 
Sbjct: 149 PLTPREHDILGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGIATTAGLIRYALDHG 208

Query: 245 I 245
           I
Sbjct: 209 I 209


>gi|167638833|ref|ZP_02397108.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
 gi|167513297|gb|EDR88668.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
          Length = 233

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 91/230 (39%), Gaps = 16/230 (6%)

Query: 17  EQRTSFVSHLPT-RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +++   VS   +  +++  +++  D        M  +        F +V      ++ ++
Sbjct: 6   QRKDVNVSRGSSILTNMKIKILIADDNSFIREGMKIILNTYE--EFEVVDTVNDGKEAVE 63

Query: 76  SIVSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---Y 130
               +D    L  VR   ++  +    + +  TE    +  T  ++      + N    Y
Sbjct: 64  YCKKNDVDIALLDVRMPNMNGVEATKLICEE-TETKPLILTTFDDDEYILDAVKNGAKGY 122

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGR 189
                D  RIR  +  ++    ++    L +I        N+ +S +     D  L T R
Sbjct: 123 LLKNNDPERIRDAIKGVYNGQTVMQDVVLDKIK------CNLMESKEDECKIDKSLFTER 176

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E+  +  I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 177 ELSIIALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226


>gi|154707512|ref|YP_001424377.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|154356798|gb|ABS78260.1| response regulator [Coxiella burnetii Dugway 5J108-111]
          Length = 214

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 11/159 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
             +  +    +L+R   +   +   +  ++ P   ++     + + + D   +   +  +
Sbjct: 59  DTNGLELSRKLLRRDATIKILMVTGMEGDLLPMRLLEVGVRGFITKSSDTTELEQAIRAV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +   R I       + L         K+         +L+ RE+E L  +++GK ++ IA
Sbjct: 119 YKGQRYISSAIANRLAL--------SKTTTAATSPFKKLSDREMEVLLLLAKGKKAEVIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L I+  TVN++   I  K   K     I  AV+  +V
Sbjct: 171 KQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQYGLV 209


>gi|311899311|dbj|BAJ31719.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 219

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 76/224 (33%), Gaps = 21/224 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLD-SIVSSDWP- 83
           +  R++  D        M  + E       VG +   +   +  +  + D ++V    P 
Sbjct: 1   MAIRVLLADDQEMVRRGMRRILETQPDLEVVGEAADGVGAVEAARLLRPDVALVDVRMPR 60

Query: 84  ---FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               ++VR +A             PT +       L E + P          L      +
Sbjct: 61  MDGLEVVRRLAGPGAAA-------PTRVVVVTTFDLDEYVYPALRHGASGFLLKRSGPAL 113

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            +  +     G  ++      + LL         +      +   LT RE E    ++EG
Sbjct: 114 LVEAVRAAHAGDSLISPS-VTVRLLRHVTGRAPAASGPGLLEP--LTRREREVAGKVAEG 170

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +T+ +IA  L IS  TV  ++ASI RK   + R G    A    
Sbjct: 171 RTNADIAGELFISAGTVKTHVASIQRKLGVRNRVGIAMRAFELG 214


>gi|271961694|ref|YP_003335890.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504869|gb|ACZ83147.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 204

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           D  LT RE + L   +EG  + EIA  L +S  TV N++ +I+ K   ++R+ A+  A
Sbjct: 141 DNPLTPRESDVLRLTAEGAEATEIAARLFLSAGTVRNHLTAIVSKLNARSRTDAVRIA 198


>gi|196229776|ref|ZP_03128640.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226102|gb|EDY20608.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 212

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 26/196 (13%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHT 115
           ++ +  +      E  L  +V     F L+  + L  K        L+R       V  T
Sbjct: 25  STGYRCISDYGSAEAALAGLVKEPPDFVLM-DINLPGKSGIECTRELKRRLPKLEIVMLT 83

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL--------LAA 167
           + ++       DN + +L     R      LL       L + L ++          +A 
Sbjct: 84  MFDD------RDNLFEAL-----RAGASGYLLKRTSPAGLLEALNQLKAGGSPMSPQIAR 132

Query: 168 YQANMFKSYDVHWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              + F+  +     +     +L+ RE E L  ++EG+   EIA  L +S +TV  YI  
Sbjct: 133 QVVHFFRQNEPAAEANGAVIEKLSARENEILRCLAEGRHYKEIADQLNLSMDTVRTYIRR 192

Query: 224 IMRKTATKTRSGAIAY 239
              K    +R+ A+  
Sbjct: 193 TYEKLHVHSRTEAVVK 208


>gi|325066221|ref|ZP_08124894.1| response regulator receiver protein [Actinomyces oris K20]
          Length = 241

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 13/175 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNR 129
             V S     L+  + +   D      +          +      T  + +       + 
Sbjct: 49  RFVQSHQVDVLITDVHMEHMDGVEMTREVLRLSPSTRVILLTTVDTDEDLLQGLGAGASG 108

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +   +     I   +  +    +++          L  Y     +  D        L+ R
Sbjct: 109 FLLKSAPAEEIIAAVRTVHSGAKVVAPT---PTTRLIDYALASVRGAD----GSVHLSQR 161

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E + L  + EG ++ +IA +L I+  TV ++I  +  KT T +R   + +A ++ 
Sbjct: 162 ERDVLRLLCEGASNRKIASLLAIAEATVKSHITGLFHKTGTVSRLEIVVWAFKHG 216


>gi|256822565|ref|YP_003146528.1| two component LuxR family transcriptional regulator [Kangiella
           koreensis DSM 16069]
 gi|256796104|gb|ACV26760.1| two component transcriptional regulator, LuxR family [Kangiella
           koreensis DSM 16069]
          Length = 214

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           ++  L     L    A  F+           LT RE + L +IS+G ++  IA  L I+ 
Sbjct: 123 MQGELVISAPLTQILAKSFRPKAEKEEFLEALTNRETQILRYISQGDSNKVIARKLEIAE 182

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +TV  ++  +++K   K+R  A  +AV N +
Sbjct: 183 STVKVHVKHLLKKINLKSRIEAALFAVENKL 213


>gi|78059869|ref|YP_366444.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383]
 gi|77964419|gb|ABB05800.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. 383]
          Length = 932

 Score = 80.0 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 164 LLAAYQANMFKSYDVHWGKDF-------------ELTGREVECLTWISEGKTSDEIAVIL 210
           LL  Y       +DV                    LT +E+  L  +++G ++  +A  L
Sbjct: 836 LLEEYLHACIAPFDVEREAPPASVPEDGTALPAESLTRKELRVLQLLAQGYSNGALAEKL 895

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S +TV  ++ +I  K     R+ A+A   R  +V
Sbjct: 896 FVSDSTVRTHLRNINAKLNVPNRTSAVAAGRRLGLV 931


>gi|299137142|ref|ZP_07030324.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600547|gb|EFI56703.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 210

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                D  LT  E+  L  I+ G  + +IA  L IS +TV   + +I+ K     R+ A 
Sbjct: 140 AEHATDEALTAGEISVLRLIAAGNANKQIADQLSISEDTVKGRVKNILSKLGANDRAHAA 199

Query: 238 AYAVRNNI 245
              ++  I
Sbjct: 200 TIGIKRGI 207


>gi|289167132|ref|YP_003445399.1| response regulator [Streptococcus mitis B6]
 gi|288906697|emb|CBJ21531.1| response regulator [Streptococcus mitis B6]
          Length = 199

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLHAGNRTEAANIAKESG 197


>gi|222150392|ref|YP_002559545.1| two-component response regulator NreC [Macrococcus caseolyticus
           JCSC5402]
 gi|222119514|dbj|BAH16849.1| two-component response regulator NreC [Macrococcus caseolyticus
           JCSC5402]
          Length = 216

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G  + EIA +L +S  TV  + A IM K   K++   + YA++  +
Sbjct: 154 LTKRELEILPLIAKGYGNKEIAEMLYVSVKTVEAHKARIMDKLELKSKPELVEYALKKKL 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|219850507|ref|YP_002464940.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219544766|gb|ACL26504.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 213

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (40%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           R     L    R +LR  L+    L                    L+ RE E L  ++ G
Sbjct: 105 RAADAELIAAIRAVLRGELYIHPALTRRLLEDILPQPQPTNPWESLSEREREVLVLVARG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+ EIA  L +S  TV  Y    M K   ++R+  + +A+ +N++
Sbjct: 165 YTAAEIAGQLNLSPKTVETYRTRGMEKLGLRSRAALVQFALDHNLL 210


>gi|332702953|ref|ZP_08423041.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553102|gb|EGJ50146.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 225

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            I+  D        + L E+ K +        +     H   + I            +  
Sbjct: 52  EIILLDLSLPDGSGLDLIEQFKTHLPT---VHIVVVSMHAKLDLIAAAFKAGAEGYLVKE 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A   +  +    + +  L   +    ++        +   +       LT RE + + 
Sbjct: 109 STAERLLQALDAVTREQQYLDSAI-SPKVVQKLLEFSTRRAQMTDSAYGSLTQREQQIMR 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G TS  IA  L I+R TV N+ A+IM K   K  +  + YA R  ++
Sbjct: 168 LLADGWTSSAIAGKLFITRKTVENHRANIMSKLGLKNLADLVRYAARLGLI 218


>gi|325269082|ref|ZP_08135703.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324988703|gb|EGC20665.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 318

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 81/214 (37%), Gaps = 11/214 (5%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
             LD T +    +  L +        +     ++E+ +   V +    +      +    
Sbjct: 105 AALDETDNLARLILRLFDEYAHD---IRNHMKYEEKMVFPYVEAMLKGEASDAYDIETYS 161

Query: 97  KYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           K+++    +  EL   +   LP +       +NR  +  +D+      L L       I 
Sbjct: 162 KHHSQTDLKLRELKSIIIKYLPSDAHH----NNRLTATLYDIYNCESWLTLHAEVEEEIF 217

Query: 156 RDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
              +  +      +    K  ++       +  L+ RE + +  +++G T+ EIA  L I
Sbjct: 218 IPVIRRLEQKTQQKDVSLKITNMITQSPDSNEVLSDREKDVIVAVAQGMTNKEIADHLCI 277

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S NTV  +  +I RK    + +G   YA+ NN+V
Sbjct: 278 STNTVITHRRNIARKLQIHSPAGLTIYAIVNNLV 311


>gi|199597520|ref|ZP_03210949.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591543|gb|EDY99620.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 202

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A
Sbjct: 136 AESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMA 195

Query: 241 VRNN 244
            RN 
Sbjct: 196 KRNK 199


>gi|56962510|ref|YP_174236.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908748|dbj|BAD63275.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 199

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  D+ +  +  LT RE + L  I+EG+T+ +IA  L I+  TV NY++ I+ K     R
Sbjct: 126 ELVDMVYHNETPLTEREEQVLKLIAEGRTTQQIADELKITNGTVRNYVSVILDKLEVGNR 185

Query: 234 SGAIAYAVRNN 244
             AI+Y  +  
Sbjct: 186 IEAISYYQKKG 196


>gi|88854577|ref|ZP_01129244.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88816385|gb|EAR26240.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 206

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 6/170 (3%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +V S  P  ++  +   E +   +V +R   L        P  +       +       +
Sbjct: 42  LVQSTSPSVILMDLQFGEAETGADVTRRIRAL-----EAAPYVLVLTNYDTDGDILGAVE 96

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
                  L+   P   +I   R    G  A   A   +  D        L+ RE+E L  
Sbjct: 97  AGASG-YLLKDAPPHELIAAVRAAAAGESALAPAIAGRLLDRMRAPQISLSKREIEVLDK 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ GK++  +A  + +S  T+ +++  I  K    +R+ A++ A    ++
Sbjct: 156 VAHGKSNAVVASEIFVSETTIKSHLVHIFSKLDVSSRTAAVSRARELGVL 205


>gi|190889703|ref|YP_001976245.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190694982|gb|ACE89067.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 260

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAV 208
            R+  +    E  L      ++ ++  +   +D    LT REV+ L  I +G  +  IA 
Sbjct: 152 NRLANKSAQLEPSLYQTKSVDVARNNALKLRRDSISALTTREVQILDLICKGTQNKIIAD 211

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L +S NTV  ++ +I +K   + R+ A + 
Sbjct: 212 KLHLSENTVKVHVRNIYKKMNVRNRTEAASR 242


>gi|241204229|ref|YP_002975325.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858119|gb|ACS55786.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 207

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 12/190 (6%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE--KDKYYNVLQRPTE 107
            +L+E    S F++V      +     I S + P  ++  +++         +VL R   
Sbjct: 21  RSLSEI---SGFVVVGEGASSDDA-AMIASDNHPDIMLLDVSMPGGGLSAVSDVLARSPT 76

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
               +     E  T    +               +G   L    + +LR   +    ++A
Sbjct: 77  TKVLMLTVSEEVDTLLGALQRGAMGYVL----KGVGSRGLAEAIQTVLRGSRYISPTMSA 132

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
               M  S +        LT RE E +  +++G ++  I + L +   TV +++  I+ K
Sbjct: 133 KV--MENSLNGGTSDKNSLTPREREVMDLVAQGLSNKHIGLRLSLQEKTVKHHMTQILSK 190

Query: 228 TATKTRSGAI 237
                R+ A 
Sbjct: 191 LGASNRTEAA 200


>gi|46198976|ref|YP_004643.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46196600|gb|AAS81016.1| two-component response regulator [Thermus thermophilus HB27]
          Length = 192

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG ++ EIA  L +S  TV +++ S+  K   + R  A++ A     
Sbjct: 131 LTPREEEVLRLLAEGLSTKEIARALRLSPETVRSHLESLYAKLEARNRVEALSRARSLGF 190

Query: 246 V 246
           +
Sbjct: 191 L 191


>gi|121606401|ref|YP_983730.1| regulatory protein, LuxR [Polaromonas naphthalenivorans CJ2]
 gi|120595370|gb|ABM38809.1| regulatory protein, LuxR [Polaromonas naphthalenivorans CJ2]
          Length = 222

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 161 EIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           E   LA    N++        +    L+ RE+ECL    +G T+ +   +L  S  TVN 
Sbjct: 136 EPSQLAWSALNIWPLVKRALAQARNPLSPRELECLDLAFQGMTARKTGDMLACSERTVNF 195

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++A+ M K     +  A+  A    ++
Sbjct: 196 HLANAMNKLKVDNKMAAVQRACWFGLI 222


>gi|330445311|ref|ZP_08308963.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489502|dbj|GAA03460.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 208

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+  L      +A                 +LT RE++ L  +++G+ + +IA  L IS
Sbjct: 116 LLKSALCGGKAYSAVVKECLAEQHSTDDMLSQLTERELQILQEVAKGQRNRQIAEQLFIS 175

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
             TV  ++ S+++K   K+R+ A  
Sbjct: 176 EATVKVHMKSLLKKLQVKSRTAATI 200


>gi|311103650|ref|YP_003976503.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758339|gb|ADP13788.1| bacterial regulatory protein, LuxR family protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 212

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 9/157 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            MA +E  K     +    +        PE++        +         +     +   
Sbjct: 60  DMAGAELLKRLRQRRAQLRILVLSASQDPEDMRRALEAGAQGFLNKSASCQELAAALEAV 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            + +   R  +    LLA  Q                LT R+ E L  + +G  + EI+ 
Sbjct: 120 SEAQPAHRS-VSSSALLAGGQDEAALLR--------ALTPRQNEVLCLMCDGLRNKEISE 170

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L ++  TV  ++++I+       R+ A   A R  +
Sbjct: 171 RLNMTEKTVKTHVSAILGTLGVLNRTQATLVARRGGV 207


>gi|312137865|ref|YP_004005201.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325673369|ref|ZP_08153061.1| response regulator [Rhodococcus equi ATCC 33707]
 gi|311887204|emb|CBH46513.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325555959|gb|EGD25629.1| response regulator [Rhodococcus equi ATCC 33707]
          Length = 212

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G  +  I+  L +S  TV N++++++ K     RS AI  A    
Sbjct: 150 ELTEREHEVLDLIARGHDNATISRRLVLSPKTVRNHVSNVLTKLGVPDRSTAIVRAREAG 209


>gi|294676640|ref|YP_003577255.1| LuxR family autoinducer-binding transcriptional regulator
           [Rhodobacter capsulatus SB 1003]
 gi|294475460|gb|ADE84848.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacter capsulatus SB 1003]
          Length = 261

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE ECL   ++G+++ E + ++  S  TV  ++ + +RK   + RS A+A AVR  +
Sbjct: 201 LSARERECLDHAAQGRSAKETSRLIERSVPTVVMHLNAAVRKLGARNRSHAVAEAVRRGL 260

Query: 246 V 246
           +
Sbjct: 261 I 261


>gi|289643816|ref|ZP_06475923.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289506369|gb|EFD27361.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 115

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 38/68 (55%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              VH  +   LT +E   L  I+EG T+ +IA  L ++  TV NY++S++ K   ++R+
Sbjct: 45  QEPVHDERLATLTEQERRILALIAEGLTNRQIANRLFLAEKTVKNYVSSLLAKLGLESRT 104

Query: 235 GAIAYAVR 242
            A  +A +
Sbjct: 105 QAAVFATK 112


>gi|167751935|ref|ZP_02424062.1| hypothetical protein ALIPUT_00177 [Alistipes putredinis DSM 17216]
 gi|167660176|gb|EDS04306.1| hypothetical protein ALIPUT_00177 [Alistipes putredinis DSM 17216]
          Length = 203

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + +EL+ RE E L  ++ G T+ EIA    IS +TV ++  +I RKT  KT +G   YA+
Sbjct: 132 EGYELSEREREILVAVARGLTNREIADQYFISIHTVISHRKNITRKTGIKTIAGLTVYAL 191

Query: 242 RNNIV 246
            NN++
Sbjct: 192 LNNMI 196


>gi|116255424|ref|YP_771257.1| putative two-component response regulator transcriptional regulator
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115260072|emb|CAK03171.1| putative two-component response regulator transcriptional regulator
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 210

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 78/199 (39%), Gaps = 14/199 (7%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL- 108
              T  + A+H L V      +Q L  + + + P  ++  + +  +     + +R  EL 
Sbjct: 15  RTATARLLAAHGLKVEAYESGDQFLAGLSACE-PGCVLLDLQMPGQSG-LQIQRRLCELA 72

Query: 109 -FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
              PV     E     +    +  +  F + +     +L+    R +++   +E  L   
Sbjct: 73  PLLPVVFLTGEGDIKASVEAMKAGAKDF-LEKSSTTAVLMEAIDRALIQ---YERQLAEH 128

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +    ++          L+ RE E   ++  G+ + +IA  LGIS  TV  +   +M K
Sbjct: 129 DRLQAQRTLVA------GLSPREAEVFRFLIRGRLNKQIAYALGISERTVKVHRHQVMDK 182

Query: 228 TATKTRSGAIAYAVRNNIV 246
              ++ + A++ A    ++
Sbjct: 183 LGVRSLAEAVSIAANIGLI 201


>gi|86740248|ref|YP_480648.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86567110|gb|ABD10919.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 156

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            R+R+  + L      +    L    + + +  +     +        F LT RE+E LT
Sbjct: 45  ERVRLAQIELLELSAQMTAPHLRRQILHIYSLLRNEPVVTPGPPKPPPFRLTLREMEVLT 104

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ E A  L I   TV  Y+ SIMRK   + R+ A+  A ++ ++
Sbjct: 105 LVATGCSNVEAAEHLTIRAETVKTYMRSIMRKMGVRNRTAAVHAARQSGLL 155


>gi|332669983|ref|YP_004452991.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332339021|gb|AEE45604.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 215

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 7/139 (5%)

Query: 108 LFCPVFHTLPENI-TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +     H   + +          Y   +     +   +  +     I+         +  
Sbjct: 80  VLVVTMHEDDDAVVASVRAGARGYLVKSAPPDAVERAVRAVAAGEMILSP------AVAQ 133

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
              A +            +LT RE E L  ++ G+ +  I+  L +S  TV N++A+++ 
Sbjct: 134 RAMAYVLGGRTATRVPFPQLTDREREVLDLVAAGRDNAVISRRLSLSPKTVRNHVANVLT 193

Query: 227 KTATKTRSGAIAYAVRNNI 245
           K +   RS AI  A    +
Sbjct: 194 KLSLPDRSAAILRAREEGL 212


>gi|327438849|dbj|BAK15214.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 217

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 113 FHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           F    ++      MD   Y SL      +   + ++    +    D + ++         
Sbjct: 82  FSKDYDSFQRAMAMDVVGYISLNSHPEELIYAIQIIQKGRKYYDPDLIDKL-------IQ 134

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K   +   +   LT +E E +  +  G ++ +IA  L IS NTV  +++ ++ K    
Sbjct: 135 TQKESSIDDSRLALLTTKEKEVMQKLGMGYSNKQIAHSLYISENTVKKHVSQVLSKLELG 194

Query: 232 TRSGAIAYAVRNNIV 246
            R+    +A    +V
Sbjct: 195 DRTQVALFANETGLV 209


>gi|288962652|ref|YP_003452946.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914918|dbj|BAI76402.1| two-component response regulator [Azospirillum sp. B510]
          Length = 194

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 17/193 (8%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
           T  + A+  ++   D  Q   +D +   D+  DLVR + ++  D +  VL    +    +
Sbjct: 13  TSSLKAALQIVQEGDASQVILIDPVGIGDFT-DLVRALKVACPDTHVVVLTSTLDAEI-M 70

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIG-LMLLFPKGRIILRDRLWEIGLLAAYQAN 171
              +          D    +L   +  + IG  +       +++  RL  +  LA     
Sbjct: 71  TKAIQAGADGFLMKDMSMEALAQSLRLVMIGETVFPSALAALLIGSRLNGVADLAVLHKG 130

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +              + RE + L  +  G ++  IA  L I+  TV  ++ S++RK    
Sbjct: 131 V--------------SKREAQVLRCLQNGSSNKTIANHLRITEATVKLHLKSLLRKINVS 176

Query: 232 TRSGAIAYAVRNN 244
            R+ A  + + N 
Sbjct: 177 NRTQAALWGLNNG 189


>gi|269217647|ref|ZP_06161501.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269212582|gb|EEZ78922.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 212

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 15/178 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-------LFCPVFHTLPENITPPAGMDN 128
            +V    P  L+  + + +     +V ++  +       L   ++ T  + +       +
Sbjct: 41  ELVEKLRPDVLLLDLRMPDMSG-SDVARKALQISPDTKILILTMYDTDRDILAAIEAGAS 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  R+   +      GR +L +R       A       +      G   EL+ 
Sbjct: 100 GYVLKDIEPFRLAEAIRATA-SGRTVLDER------AARAVTQSVRGGSSADGGVEELSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E   L   +EG T+ +IA  LG+   TV  Y +    K     R+ A+  A+R   +
Sbjct: 153 QEKRVLALAAEGMTNRQIATALGVGAATVKTYFSRAFAKLDVVDRTSAVVEAMRRGEI 210


>gi|237846560|gb|ACR22888.1| SpsR [Serratia plymuthica]
          Length = 248

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +D    K+   + RE E + W S GK+  EIA+ILGI   T+  +I + ++K        
Sbjct: 170 FDKMNNKEI-FSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKH 228

Query: 236 AIAYAVRNNIV 246
           AI   V   ++
Sbjct: 229 AIRLGVELQLI 239


>gi|212640069|ref|YP_002316589.1| transcriptional regulator LuxR family [Anoxybacillus flavithermus
           WK1]
 gi|212561549|gb|ACJ34604.1| Transcriptional regulator LuxR family [Anoxybacillus flavithermus
           WK1]
          Length = 194

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L+ RE +    + +G ++ EIA  L +S +T+ N+I ++ +K   K RS  IA 
Sbjct: 135 QLSERERQVFFLLLKGYSNKEIAKELILSEHTIKNHINNLFQKLDVKRRSQLIAK 189


>gi|302036829|ref|YP_003797151.1| putative LuxR family response regulator [Candidatus Nitrospira
           defluvii]
 gi|190343243|gb|ACE75631.1| putative two component transcriptional regulator [Candidatus
           Nitrospira defluvii]
 gi|300604893|emb|CBK41226.1| putative Response regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 249

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 15/182 (8%)

Query: 76  SIVSSDWPFDLVRCM--ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           S+VS + P  L+  +   +        V    + +     H + +       + +    L
Sbjct: 51  SLVSQEQPHLLIIELEPGMDILGLVRKVKASLSTIRIIALHGIEDCRGGLEALSSGIDGL 110

Query: 134 TFDVARIRIGLMLL---------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                   + L ++           +        L        ++  +    D  W +D 
Sbjct: 111 VLTTQPGAVLLAIIEYLCRRPANVARCLPCDTSALERTRSTGGFEDRIPVPPD--WSED- 167

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + +T I EG ++ +IA  L I   TV +++ SI  K    +R   +  A +  
Sbjct: 168 -LTKRERDIITLIGEGLSNKDIACRLSICSTTVRHHLTSIFGKLDVHSRQQLLIRAHKYG 226

Query: 245 IV 246
           +V
Sbjct: 227 LV 228


>gi|83593567|ref|YP_427319.1| two component LuxR family transcriptional regulator [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576481|gb|ABC23032.1| two component transcriptional regulator, LuxR family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 212

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 8/159 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC---SLTFDVARIRIGLMLL 147
            +  ++    + + P      V     +     + +D+  C     +     +   L L+
Sbjct: 59  DMDWREALSALRRLPDPPDVVVLSGADDVAMIRSAIDHGACGYIPKSLKGDVLESALRLI 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  I  +      +       M    D     D  LT R+ E L  I  G ++ +IA
Sbjct: 119 LAGGFYITPEVYRGPRVYDGAVRIMGVGGD-----DVPLTPRQKEVLAHIDAGLSNRQIA 173

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + +S  TV  +I  + +    ++R+ A+A A R  ++
Sbjct: 174 QAMTLSEATVKMHIGRLFKALGAQSRTDALAVARRKGML 212


>gi|329954461|ref|ZP_08295552.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
 gi|328527429|gb|EGF54426.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
          Length = 217

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    R +L    +        +A M +S +   G+  ELT RE++ L  ISEGK + EI
Sbjct: 116 IAEAIRRVLDGETYYCPYAEHVRAQMKRSDE---GRREELTLRELDVLKRISEGKNTQEI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +S NTV+ +   +M K   +  +  I  A+   I+
Sbjct: 173 AQELCVSTNTVDTHRRHLMDKLDARNVADLIMTAISKGII 212


>gi|156975940|ref|YP_001446847.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116]
 gi|156527534|gb|ABU72620.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116]
          Length = 214

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G +++++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 152 VDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|116328918|ref|YP_798638.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116121662|gb|ABJ79705.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 233

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT R+++ L +++ G T  +IA  L IS +TV+ +I  I +K    ++S AI    R 
Sbjct: 164 LGLTKRQLQILNFVALGMTVADIADELDISSHTVSRHIEKIYKKMEVHSKSEAIIRGRRM 223

Query: 244 NIV 246
            I+
Sbjct: 224 GII 226


>gi|15596594|ref|NP_250088.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|9947343|gb|AAG04786.1|AE004569_4 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
          Length = 210

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 146 LTERQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|319779891|ref|YP_004139367.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317165779|gb|ADV09317.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 517

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 4/123 (3%)

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL--AAY 168
           PV  T    I   A         +  +A +  G  L F     I  D L +   L  A  
Sbjct: 375 PVGTTARVAIQLAAHAGRGDIIASRLIADLAAGSGLHFTDAGRISVDELEQPLALVHATS 434

Query: 169 QANMFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           + ++           +   LT RE E +  +++GK++  IA  L +S +TV  ++A+I+ 
Sbjct: 435 EQHLEPACRPKPKTAEPAALTARESEVVNLVADGKSNAAIAAELRLSEHTVKRHVANILL 494

Query: 227 KTA 229
           K  
Sbjct: 495 KLD 497


>gi|293607035|ref|ZP_06689378.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292814525|gb|EFF73663.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 218

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT ++   L  +  G  + +IA  L IS  T+  ++ +IMRK     R+ A+  A R  
Sbjct: 149 DLTPQQFRVLQMVGAGLLNKQIAHELQISEATIKAHMTAIMRKLRVTNRTQAVLIAGRLG 208

Query: 245 I 245
           +
Sbjct: 209 L 209


>gi|262200127|ref|YP_003271335.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262083474|gb|ACY19442.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 410

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   L  RE E L  ++ G+ +  IA  LG+S NT+  ++ SI++K     R  A 
Sbjct: 340 PDEERLSALNPREREVLGHLALGRRNKSIAAELGVSENTIKFHVTSILQKLHVSNRGEAG 399

Query: 238 AYAVRNNI 245
             A R  I
Sbjct: 400 LLAARAGI 407


>gi|160893007|ref|ZP_02073795.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50]
 gi|156865090|gb|EDO58521.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50]
          Length = 207

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT +E E +  +++G  + EIA  L +S  TV NY+++I+ K   + R+    +  +N
Sbjct: 146 YNLTEKEFELIRLVADGLNNKEIAEQLFLSEGTVRNYLSNILMKLDLRDRTQVACFYYKN 205


>gi|116330476|ref|YP_800194.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124165|gb|ABJ75436.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 233

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT R+++ L +++ G T  +IA  L IS +TV+ +I  I +K    ++S AI    R 
Sbjct: 164 LGLTKRQLQILNFVALGMTVADIADELDISSHTVSRHIEKIYKKMEVHSKSEAIIRGRRM 223

Query: 244 NIV 246
            I+
Sbjct: 224 GII 226


>gi|148260734|ref|YP_001234861.1| response regulator receiver protein [Acidiphilium cryptum JF-5]
 gi|146402415|gb|ABQ30942.1| response regulator receiver protein [Acidiphilium cryptum JF-5]
          Length = 267

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  G DF LT R+      + +GK +  IA  LG+S +TV  +I +IMRK     R
Sbjct: 189 PPSGFAPGDDF-LTPRQKLVFAHLRQGKANKIIAYELGVSESTVKVHIKNIMRKIGATNR 247

Query: 234 SGAIAYA 240
           + A+  A
Sbjct: 248 TQAVYKA 254


>gi|325066413|ref|ZP_08125086.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
          Length = 244

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G T+ EI     +S  TV  +++ ++ KT  + R   +  A+R  +
Sbjct: 175 LTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTGCRDRVQLVLLALRGGV 234

Query: 246 V 246
           +
Sbjct: 235 I 235


>gi|300788038|ref|YP_003768329.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797552|gb|ADJ47927.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           + LLA +     +      G    LT RE + +  +++G+T+ EIA  L +S +TV  ++
Sbjct: 134 VRLLARFTERARRRAQ---GAPDLLTDRESDVVLAVAQGRTNAEIADDLRVSLSTVKTHL 190

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ RK   + R+    +A +  ++
Sbjct: 191 TNVQRKLELRNRTEIAIWAWQRGLL 215


>gi|298242114|ref|ZP_06965921.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555168|gb|EFH89032.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 221

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I++G+++  IA    +S  TV N++++I  K     R+ AI  A    
Sbjct: 159 DLTERERQILHLIAQGESNTAIAKRFTLSLKTVQNHVSNIFSKLQVADRAQAIVRARDAG 218

Query: 245 I 245
           +
Sbjct: 219 L 219


>gi|296131053|ref|YP_003638303.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022868|gb|ADG76104.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 218

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 16/215 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW----PFDLVRCM 90
           R++  D   +    +  L E  G       R ++  E     +         P  ++  +
Sbjct: 7   RVLLADDHAAIRAGLRLLLEQSG-------RVEVVGEASDGDVALRQARALRPDVVLMDV 59

Query: 91  ALSEKDKYYN----VLQRPTELFCPVFHTLPENITP-PAGMDNRYCSLTFDVARIRIGLM 145
            +   D        V +R  E+       L E +          +   T     +   + 
Sbjct: 60  RMPGTDGIAATAAIVGERLAEVVALTTFDLDEYVLGMVRAGAAGFLLKTAGARELVDAVC 119

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++  +    +    A Q     +  V   +   LT RE + LT + +G ++ E
Sbjct: 120 RVAAGEGVLAPEVTRRLLDAVAAQPAEPPAPVVVDARLANLTARERDVLTALGDGLSNAE 179

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           IA  L +S  TV ++++ ++ K   +TR  A   A
Sbjct: 180 IAARLVVSETTVKSHVSHVLAKLGVRTRLQAGVLA 214


>gi|325964374|ref|YP_004242280.1| LuxR family transcriptional regulator [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470461|gb|ADX74146.1| two component transcriptional regulator, LuxR family [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 217

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            F +L    +           L         G   L+P              L+  Y   
Sbjct: 93  FFESLRAGASGYVLKSVADRDLIEACRASMRGESFLYPGAV---------TALIRDYLER 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +   +    +  LT RE +    I+EG ++ EIA  L IS  TV+ + A++++K   +
Sbjct: 144 DRRGDRM---PNSILTPREEQITKLIAEGNSTKEIADALKISIKTVDRHRANVLQKLGLR 200

Query: 232 TRSGAIAYAVRNNIV 246
            R     +A+R  ++
Sbjct: 201 DRLDLTRFAIRTGLI 215


>gi|296452018|ref|ZP_06893733.1| salavaricin two component response regulator [Clostridium difficile
           NAP08]
 gi|296879587|ref|ZP_06903566.1| salavaricin two component response regulator [Clostridium difficile
           NAP07]
 gi|296259209|gb|EFH06089.1| salavaricin two component response regulator [Clostridium difficile
           NAP08]
 gi|296429390|gb|EFH15258.1| salavaricin two component response regulator [Clostridium difficile
           NAP07]
          Length = 206

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + I  D L +  LL  YQ       +       +LT  E   L  I  GK    IA  L
Sbjct: 108 NKNISPDSLID-SLLKVYQGGTCFPSENTEVIIEDLTSMEKRILQLICSGKKRKIIADEL 166

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  T++N++  I  K    +   AI  A++   +
Sbjct: 167 YISERTLSNHLQHIYDKLDVSSSVEAITKAIQMGYI 202


>gi|293607367|ref|ZP_06689706.1| LuxR family DNA-binding response regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292814211|gb|EFF73353.1| LuxR family DNA-binding response regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 212

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E L  + +G  + EI+  L ++  TV  ++++I+       R+ A   A R  +
Sbjct: 148 LTPRQQEVLRLMCDGLRNKEISERLCMTEKTVKTHVSAILAALGVLNRTQATLVARRGGV 207


>gi|227833967|ref|YP_002835674.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183544|ref|ZP_06042965.1| transcriptional regulator, LuxR family protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454983|gb|ACP33736.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 279

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 6/147 (4%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
             +  R  E    V   L        G    +     +  ++R     L      +  + 
Sbjct: 135 VTMTARCLEQDLAVNSALRRADGGKGGAARGHVMNGAEWEQVRSTHSKLRMLANRVNDED 194

Query: 159 LW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           L  E+  L     +      V   +  +L+ RE++ L+ ++ G T+ E A  +GI   TV
Sbjct: 195 LRKELEALCDQMVS-----PVRVKQSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETV 249

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNN 244
            +Y+ S+MRK    TR  A+  A R  
Sbjct: 250 KSYLRSVMRKLGAHTRYEAVNAARRIG 276


>gi|261409922|ref|YP_003246163.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261286385|gb|ACX68356.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 217

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 3/155 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   L+  +    + +R       +  F                Y     D  RIR  +
Sbjct: 56  VRMPNLNGVEATKQLTERTKTKTLILTTFDDDEYITDAILNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I        N  K+           T RE++ +  I++G  + 
Sbjct: 116 KTVYHGHHVLQDVVLDKIKS-GLSPGNPDKTDKADKFDRSLFTERELDIMALIAKGLANK 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ N+I S++ KT  + R+    +
Sbjct: 175 EISKKLFISEGTIANHITSVLSKTGLEHRTQIAIF 209


>gi|27376305|ref|NP_767834.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27349445|dbj|BAC46459.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 223

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +    F V  +R  ++ +      +  D      L AA   +M +  D    +   L
Sbjct: 103 ASGFIPKRFGVETLRDAILKVMEGDVWVPAD----TDLSAATDPDMTRLRD----RLVTL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A R
Sbjct: 155 TPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAR 210


>gi|332305146|ref|YP_004432997.1| transcriptional regulator, LuxR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172475|gb|AEE21729.1| transcriptional regulator, LuxR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 887

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 6/165 (3%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           ++    + S +  DL     L    KY +  +    L  P +H+    +           
Sbjct: 708 KRFGFDLKSKFSCDLPAPYQLELCGKYLDAAEVWMSLGIP-YHSALSLMQVQQPQAQEAL 766

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
              + +         L           L E   L + +   ++    H      LT +E 
Sbjct: 767 PRAYQILDAIGAKAGLTKVREKAKGYELVE--YLPSVRRGPYRRTRQHPA---GLTAKEQ 821

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           E L ++S G ++ EIA  L  S+ TV N++ASI+ K     R  A
Sbjct: 822 EVLRYLSTGSSNKEIASALSRSQRTVENHVASILTKLNVSNRMEA 866


>gi|319948162|ref|ZP_08022323.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea
           P4]
 gi|319438174|gb|EFV93133.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea
           P4]
          Length = 294

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 6/153 (3%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L++       L++   +   +       + P +G + R+  +  +         L     
Sbjct: 145 LNQMAATARALEQEIAVNDALAARGAAPVGPGSG-EGRWDDVLSNERMRETHARLRMLAS 203

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R    D   E+  + A   +              L+ RE++ L  +++GKT+ E A  +G
Sbjct: 204 RTEDPDVRAELERICAEMVSPPPEMPTAR-----LSRRELDVLACVAQGKTNIETAADMG 258

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I   TV +Y+ S+MRK    TR  A+  A R  
Sbjct: 259 IGAETVKSYLRSVMRKLDAHTRFEAVNAARRMG 291


>gi|302557514|ref|ZP_07309856.1| LuxR family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475132|gb|EFL38225.1| LuxR family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 144

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 155 LRDRLWEIGLLAAY-QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           L  R+ +  L A   QA    + +        LT REV+ L  ++ G T+   A  LG++
Sbjct: 51  LAPRIADPALRAELLQACALLTAETAPSVTVRLTPREVDVLACVAAGATNGVAAERLGVT 110

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             TV  Y+ S MRK   +TR  A+  A R  
Sbjct: 111 AETVKAYLRSAMRKLGVRTRGQAVVAARRAG 141


>gi|311111869|ref|YP_003983091.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943363|gb|ADP39657.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 210

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 28/62 (45%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L     G T+  I   L +S  TV N+++S M K     R  AI  A  
Sbjct: 147 ESPLTERETEILRVAGHGATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAAD 206

Query: 243 NN 244
           N 
Sbjct: 207 NG 208


>gi|298290097|ref|YP_003692036.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926608|gb|ADH87417.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 222

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  LG+S  TV  ++++I++K   ++R+ A+  A +
Sbjct: 155 LTPQQVRVLMMLSEGLLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAVIAASK 211


>gi|218513962|ref|ZP_03510802.1| probable two-component response regulator protein [Rhizobium etli
           8C-3]
          Length = 111

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M  S          LT RE E +  +++G ++  I + L +   TV +++  I+ K    
Sbjct: 39  MENSLHDAASDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVS 98

Query: 232 TRSGAI 237
            R+ A 
Sbjct: 99  NRTEAA 104


>gi|126739109|ref|ZP_01754803.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
 gi|126719726|gb|EBA16434.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
          Length = 214

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 14/140 (10%)

Query: 108 LFCPVFHTLPENITPPAG-MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +     H  PE I+         Y         I++ +  +    R           L  
Sbjct: 81  ILILSMHDSPEYISTALSHGAMGYVLKDVPTEEIKLAIDTVMRGERY----------LCT 130

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             Q  M             LTGRE   L  +++GK++ E+A+ L IS  TV  +  +I R
Sbjct: 131 GAQGAMAPKEGETREA---LTGREQTILLELAQGKSNKEVALHLDISVRTVETHRKNIKR 187

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    + +G   YA+ + ++
Sbjct: 188 KLGISSTAGLTRYALEHGVL 207


>gi|83954912|ref|ZP_00963590.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. NAS-14.1]
 gi|83840638|gb|EAP79810.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. NAS-14.1]
          Length = 213

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +  +L          +     L+  + ++ +GL  + P               +A     
Sbjct: 89  IVSSLSAGADGYLLKETEAAVLSRQLTQLSMGLPAISPS--------------VARRIME 134

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F+        D  LT RE E LT IS+G  + E+A  L I+  TV  YI  + RK    
Sbjct: 135 HFRLTGPVASLDGRLTERETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGIS 194

Query: 232 TRSGAIAYAVRNNI 245
           +R+ A  +A R  +
Sbjct: 195 SRAEAAWHANRLGL 208


>gi|312796856|ref|YP_004029778.1| transcriptional regulator, LuxR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312168631|emb|CBW75634.1| Transcriptional regulator, LuxR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 294

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + L  +  G T+  IA  LGIS  TV  ++ +I  K     R+ A+A
Sbjct: 170 LSPRQEQILRLVHMGATNKSIARALGISEGTVKIHLGAIFEKLGATNRAAAVA 222


>gi|308177129|ref|YP_003916535.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307744592|emb|CBT75564.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 222

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 16/174 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           P  ++  + + + D    +     +     +           I            L    
Sbjct: 53  PAVILMDIRMPQLDGLSAMESILDQKPDAKVMILTTFGDESYIDRALSGGAAGFMLKSSG 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVE 192
               I  +L   +G   L  R      +A       ++ D     D +     LT RE +
Sbjct: 113 PDELISAVLAVAEGAAALSPR------IAQRVIEKVRNLDSSGQSDAQTLVRKLTAREHD 166

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +    T+ EIA  L ++  TV  ++ SIM K   + R  A   A R  IV
Sbjct: 167 VLALVGASLTNSEIAGRLFLTEATVKGHMTSIMLKINARNRVDAALIAYRAGIV 220


>gi|307326345|ref|ZP_07605541.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888008|gb|EFN18998.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 228

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +       + S          LTGRE++    ++ G+T+ EI   L +S +TV  ++++
Sbjct: 143 AITVRLLRQWASRPGAATGANPLTGRELDVARLVAVGRTNQEICAELHLSLSTVKTHLSN 202

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I  K A + R    A+A    
Sbjct: 203 IQTKLAVRNRVEIAAWAWDTG 223


>gi|296131220|ref|YP_003638470.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
 gi|296023035|gb|ADG76271.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
          Length = 201

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            R +     + + L    + +   +         +L+ RE + +  ++ G  + EIA  L
Sbjct: 80  RRDVTPSARYRLTLSTVARDDAPPAPHRGHDAVADLSPRESQVMACVARGMRNTEIAAEL 139

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAI 237
           G++  TV N++  I  K     R  A+
Sbjct: 140 GVTVKTVKNHVNRIFGKLGVDGRVEAV 166


>gi|289577641|ref|YP_003476268.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus
           Ab9]
 gi|289527354|gb|ADD01706.1| transcriptional regulator, LuxR family [Thermoanaerobacter italicus
           Ab9]
          Length = 257

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFE-LT 187
             +  F +    +G + +      +  + +  I LL    AN +K   D+   +D E LT
Sbjct: 138 CIATPFHIDNQIVGYLDISIIEHNMADEMMGFIDLLVYKIANEYKREMDLESQEDLEKLT 197

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++E +   ++G T   I++ LG+   TV  +   I++K   K    AIA A++ N++
Sbjct: 198 DKQIEIIKKCAKGYTELAISMELGLKPATVKYHKKEIIKKLRVKNLQQAIAKAIKLNLI 256


>gi|251782925|ref|YP_002997228.1| two-component system response regulator [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391555|dbj|BAH82014.1| two-component system response regulator [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 198

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +     LT +E+  L  I++GKTS EI+ +L +S  T+ NY +SI  K     R  AI  
Sbjct: 132 FVNPNPLTQQEMTILRLINQGKTSKEISQLLFLSSGTIRNYSSSIFDKLGVSNRIEAIRL 191

Query: 240 AVRNN 244
           A +N 
Sbjct: 192 ANKNG 196


>gi|167573291|ref|ZP_02366165.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 205

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 62/183 (33%), Gaps = 13/183 (7%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITPPA 124
                +   +   D P  ++  + L   D    + +      ++   VF  L        
Sbjct: 21  AIDMAEASDLCGRDRPDLVLMDVMLPGDDPLPAMGEILRTYPDMRFVVFTALGSEARAAD 80

Query: 125 GM---DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            +    + Y         I   +  +      I    L E  + +A              
Sbjct: 81  AIRFGASGYLLKWCSPDGIVQAVRRVMAGRVHIDPS-LDEARVASAAGGRTLAPP----- 134

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +LT RE + L  I++G  + EIA +L IS+ TV+ +   +M+K   +  +  I +A 
Sbjct: 135 -VDKLTRREKQILKLIADGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVIHWAY 193

Query: 242 RNN 244
           R  
Sbjct: 194 RYG 196


>gi|167039015|ref|YP_001662000.1| regulatory protein LuxR [Thermoanaerobacter sp. X514]
 gi|300913396|ref|ZP_07130713.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp.
           X561]
 gi|307723589|ref|YP_003903340.1| LuxR family transcriptional regulator [Thermoanaerobacter sp. X513]
 gi|166853255|gb|ABY91664.1| regulatory protein, LuxR [Thermoanaerobacter sp. X514]
 gi|300890081|gb|EFK85226.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp.
           X561]
 gi|307580650|gb|ADN54049.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp.
           X513]
          Length = 257

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFE-LT 187
             +  F +    +G + +      +  + +  I LL    AN +K   D+   +D E LT
Sbjct: 138 CIATPFHIDNQIVGYLDISIIEHNMADEMMGFIDLLVYKIANEYKREMDLESQEDLEKLT 197

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++E +   ++G T   I++ LG+  +TV  +   I++K   K    AIA A++ N++
Sbjct: 198 DKQIEIIKKCAKGYTELAISMELGLKPSTVKYHKKEIIKKLRVKNFQQAIAKAIKLNLI 256


>gi|319791973|ref|YP_004153613.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594436|gb|ADU35502.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 214

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT R+ +CL ++  G+++ EIA +L +   TVN +I S M     K+R+ A+  A++ 
Sbjct: 140 IRLTNRQCQCLEFVGAGRSTKEIARLLSLHPGTVNYHIDSAMEALGVKSRAHAVQKALQL 199

Query: 244 NIV 246
            ++
Sbjct: 200 GLL 202


>gi|284045055|ref|YP_003395395.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949276|gb|ADB52020.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 364

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 5/126 (3%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL--LAAYQANMFKSYDVHWGK- 182
            D     +         G         ++   RL  IG   L A   ++  + +    + 
Sbjct: 239 ADGEAALVRLADMLAHYGHGDAVSPSEMLSTARLVGIGPAELRAVMYDLPYATNGGRQRA 298

Query: 183 --DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE E L  + +GK   +IA  L +S +TV  ++ +I  K     R+ A+  A
Sbjct: 299 LDPCPLSARETEVLKRLGQGKVYKQIAHELELSTSTVRTHLHNIYGKLGAVDRAQAVLIA 358

Query: 241 VRNNIV 246
                +
Sbjct: 359 TERGWI 364


>gi|255533128|ref|YP_003093500.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255346112|gb|ACU05438.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 263

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +D   + RE E L W++EG +S  IA  + +S +T+ ++  ++  KT T   +  I++A
Sbjct: 198 EEDRFFSKREKEVLLWMAEGLSSKMIAEKMFVSEHTIISHRRNMQDKTNTPNATALISFA 257

Query: 241 VRNNIV 246
           ++ +I+
Sbjct: 258 LKKSII 263


>gi|166031115|ref|ZP_02233944.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC
           27755]
 gi|166028962|gb|EDR47719.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC
           27755]
          Length = 207

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 36/60 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +E+T +E   +  +++GK++ EIA  + +S  T+ NYI+ I+ K   + R+    + +RN
Sbjct: 146 YEITEKERAVMKLVADGKSNKEIAGEMFLSEGTIRNYISGILDKLNLRDRTQLAVFYLRN 205


>gi|157368315|ref|YP_001476304.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320079|gb|ABV39176.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 248

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 37/84 (44%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L A Y+     +Y          + RE E + W S GK+  EIA+ILGI   T+  +I 
Sbjct: 156 KLTAFYKEINSPTYFDKMNNKGIFSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIG 215

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           + ++K        AI   V   ++
Sbjct: 216 NAVKKLGVTNAKHAIRLGVELQLI 239


>gi|51892161|ref|YP_074852.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855850|dbj|BAD40008.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 206

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 187 TGREVEC--LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E   L  ++EG +  EI   L +S  TV  ++  +  K   + R+ A+A A+R  
Sbjct: 144 TLREEEIAMLRMLAEGASYAEIGNRLYLSERTVRRHMNLLFDKMGVQNRTQAVAEAMRRG 203

Query: 245 IV 246
           ++
Sbjct: 204 LL 205


>gi|121606967|ref|YP_984296.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595936|gb|ABM39375.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 246

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   L+ RE+E L  I+ G T+DEIA +L +S +TV  Y+  I  K   ++++ AI  A 
Sbjct: 180 EQAMLSSREMEVLQLITRGFTADEIARLLQVSSHTVQTYVRRIYSKLKVRSKAEAIYEAR 239

Query: 242 RNNIV 246
           +  I+
Sbjct: 240 QQGIL 244


>gi|332669021|ref|YP_004452029.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338059|gb|AEE44642.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 222

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 78/238 (32%), Gaps = 19/238 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +DE R   V       +L      L   V     M      VG +   L    L  +
Sbjct: 1   MTSDDEIRVLLVDD----QELFR--AGLAVIVDAQDGMRV----VGQAGDGLEAVRLADD 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV---FHTLPENITPPAGMDN 128
            + D ++      D+    A  +        +R   L   V   F              +
Sbjct: 51  LEPDVVLMDLRMADMDGVEATRQLFLPERAARRTRPLRVLVLTTFDLDDRAAAAIRHGAS 110

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +       A +R  +  +     ++    L      +      F++          L+ 
Sbjct: 111 GFLLKDTTPAMLRDAIRTVHAGNAVLAPQDL------STLLEGRFRTPTPAPPGYLALSD 164

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E E    ++ G ++ EIA  +  S +TV  ++ SI+RK A + R   + +A  + +V
Sbjct: 165 KEREVFEAVARGLSNTEIAQAVLASESTVKTHVGSILRKLALRDRVQVVVFAHEHGLV 222


>gi|330810335|ref|YP_004354797.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378443|gb|AEA69793.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 476

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 41/88 (46%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L++  +  A  A       +   K   LT RE   L  IS G ++ ++A +L IS +TV 
Sbjct: 388 LFDNDVCEAVIAAAGGERRMRQPKASVLTTRECRILLEISRGASNKQVARLLDISPSTVR 447

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ SI RK    TR+ A    +   ++
Sbjct: 448 THMESIFRKLECSTRAAATLKGLTLGLI 475


>gi|254382332|ref|ZP_04997692.1| response-regulator protein [Streptomyces sp. Mg1]
 gi|194341237|gb|EDX22203.1| response-regulator protein [Streptomyces sp. Mg1]
          Length = 221

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 69/200 (34%), Gaps = 6/200 (3%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN----VLQRPTE 107
           L   +G++  + V  +    ++   +     P  ++  + +   D        V +   +
Sbjct: 12  LVLILGSAGDIEVAGEAADGEEAVRLARELRPDLVLMDVRMPRLDGVSATRQVVAEGLAD 71

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLL 165
           +       L E +            L    A   I  +    +G  ++   +    I   
Sbjct: 72  VLVLTTFDLDEYVFGALRAGAAGFLLKNAEAAELIEAVRTVGRGEGLIAPAVTRRLIAEF 131

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA +                LT RE E L  + EG ++ EIA  L ++  TV  +++ ++
Sbjct: 132 AAPRPPRPAVPPETAAAVASLTRREREVLGRLGEGLSNAEIAGRLELAEGTVKTHVSRVL 191

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K   ++R+ A   A    I
Sbjct: 192 GKLELRSRAQAAVLARELGI 211


>gi|170782617|ref|YP_001710951.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157187|emb|CAQ02370.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 232

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           VH G +  LT RE + +  + +G ++DEI   L I  +TV +++  IM K  T+ R   +
Sbjct: 164 VHPGVEV-LTPREQDIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTV 222

Query: 238 AYAVRNNIV 246
            +  R+ ++
Sbjct: 223 VWGYRSGLL 231


>gi|54308044|ref|YP_129064.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum SS9]
 gi|46912470|emb|CAG19262.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum SS9]
          Length = 208

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE + L  +++G  + +IA  L IS  TV  ++ S+++K   K+R+ A  
Sbjct: 148 LTDRETQILQEVAKGYRNKQIADALFISEATVKVHMKSLLKKLQVKSRTAATV 200


>gi|254239749|ref|ZP_04933071.1| hypothetical protein PA2G_00374 [Pseudomonas aeruginosa 2192]
 gi|126193127|gb|EAZ57190.1| hypothetical protein PA2G_00374 [Pseudomonas aeruginosa 2192]
          Length = 210

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 146 LTERQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|260187493|ref|ZP_05764967.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|260205793|ref|ZP_05773284.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           K85]
          Length = 69

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 2   LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 60


>gi|168700050|ref|ZP_02732327.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 219

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 6/161 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI---TPPAGMDNRYCSLTFDVARIRIG 143
           V    L+       + +    +   V     +            + Y         +   
Sbjct: 57  VSMPGLTGALATERLRRECPAVKVLVLTVHEDKGYIRQLLTAGASGYALKRAAPEELVRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  +         ++  +     K          EL+ RE E     + G  +
Sbjct: 117 IRTVAAGGVYLDPA--VAQKVVGGFVKPSPKGA-TGAAGAGELSEREAEVARLTAAGHGN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L +S  TV  Y A  + K   K+R+  ++YA +  
Sbjct: 174 KEIAARLELSVKTVETYRARALEKLGLKSRAELVSYAFQQG 214


>gi|86146681|ref|ZP_01065002.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|218676406|ref|YP_002395225.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
 gi|85835528|gb|EAQ53665.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|218324674|emb|CAV26268.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
          Length = 227

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE +    +  G T+ EI+  L IS +TV  ++ +I +K     R  AI  A
Sbjct: 159 LTKREAQIFKRVIRGDTNLEISSELFISESTVKTHVYNIYKKINVTNRKEAIRKA 213


>gi|239941331|ref|ZP_04693268.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987793|ref|ZP_04708457.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291444772|ref|ZP_06584162.1| two component response regulator MppU [Streptomyces roseosporus
           NRRL 15998]
 gi|291347719|gb|EFE74623.1| two component response regulator MppU [Streptomyces roseosporus
           NRRL 15998]
          Length = 230

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 10/230 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            T+     PTR  +      +       +        VG +   L    L +  + D +V
Sbjct: 1   MTTTPPGGPTRILIADDQEDVRSGFRLILGSQPDMTVVGEAADGLTAVGLARTLRPD-LV 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
            +D     V  + ++ +     V      +   V  T   +      + +  C   F + 
Sbjct: 60  LADIRMPGVDGLEVTRRLAGPGVTD---PMRVLVVTTFDHDDYVHTALRDGACG--FLLK 114

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLT 195
           R   GL+ +      +  D L    +      N+  +             LT RE E   
Sbjct: 115 RSGPGLL-IEGVRAAMAGDMLISPQITVRLLRNLAPAAVPAPVASPSPSPLTAREQEIAR 173

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++EG T+ EI   L I+  T   +IA++  K   + R G  A++  N +
Sbjct: 174 LVAEGLTNAEIGEKLYITAGTAKTHIANVQAKLRVRNRVGIAAWSWENGL 223


>gi|291302292|ref|YP_003513570.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571512|gb|ADD44477.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 210

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 11/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          D    +L   V  +  G  L+ P    + R  + E G        
Sbjct: 87  VFDALAAGAAGFLLKDTDAEALVAAVREVAAGNGLISP---AVTRRLIAEFG-------- 135

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +           LT RE+E L+ I  G ++ +I   LG++  TV  +++ I+ K   +
Sbjct: 136 RRRPRPGSQADLSSLTQREIEVLSHIGRGLSNADIGKDLGMAEATVKTHVSRILSKLELQ 195

Query: 232 TRSGAIAYAVRNNI 245
           +R  A   A  N I
Sbjct: 196 SRVQAAILAQENGI 209


>gi|254464244|ref|ZP_05077655.1| two component transcriptional regulator, LuxR family
           [Rhodobacterales bacterium Y4I]
 gi|206685152|gb|EDZ45634.1| two component transcriptional regulator, LuxR family
           [Rhodobacterales bacterium Y4I]
          Length = 238

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 19/170 (11%)

Query: 83  PFDLV----RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTF 135
           PFDLV        +   D     L         +        T    +D     +   T 
Sbjct: 80  PFDLVLLDYNMPGMMGLDGLSKALTANGGKGVAILSGSAPARTAQEALDAGAIGFIPKTM 139

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +      +  D + E    + +                +L+ RE+E L 
Sbjct: 140 GAQSLLNAVRFMSAGEIYVPVDLMREEAAASTHPLAK------------KLSPRELEVLN 187

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +S+G ++ EIA  L +   T+  ++ ++ RK   K R+ A   A    +
Sbjct: 188 GLSKGLSNKEIARELELQEVTIKLHVRTLCRKLDAKNRTQAALCAKEAGL 237


>gi|38637927|ref|NP_942901.1| nitrate/nitrite response regulator [Ralstonia eutropha H16]
 gi|32527265|gb|AAP86015.1| nitrate/nitrite response regulator [Ralstonia eutropha H16]
          Length = 220

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 13/153 (8%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-- 163
            E    +   LP++      +      L   +     G +L   +   +           
Sbjct: 64  LEALQLLVEDLPDSAVIVLTVSEEAEELAIALRSGARGYLLKNIETEALTSAIRRAAAGE 123

Query: 164 ----------LLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGI 212
                     L+A ++A    +  V    D   LT RE E +  ++ G+++ EIA  LG+
Sbjct: 124 PVISESMTAKLVAQFRAPAPAAVAVPQQVDTARLTVREREIVQELARGESNKEIARTLGV 183

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +TV  ++ +I++K    +R     YAV + +
Sbjct: 184 AASTVKIHVQNILKKLNLASRVQVAVYAVEHRL 216


>gi|327194559|gb|EGE61413.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 260

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           E  L      ++ ++  +   +D    LT REV+ L  I +G  +  IA  L +S NTV 
Sbjct: 162 EPSLYQTKSVDVARNNALKLRRDSISALTTREVQILDLICKGTQNKIIADKLHLSENTVK 221

Query: 219 NYIASIMRKTATKTRSGAIAY 239
            ++ +I +K   + R+ A + 
Sbjct: 222 VHVRNIYKKMNVRNRTEAASR 242


>gi|302039255|ref|YP_003799577.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300607319|emb|CBK43652.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-AGMDNR 129
           ++    IV  D    L+  +  + + K  +   +   +     H   + +        + 
Sbjct: 44  DRVHPDIVILDVSMPLLNGIDAATQLKKTHPSIKVIFVT---MHADADYVRSAFEAGASG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           Y      V  +   +  ++        +I +D L  +  L A QA   K+          
Sbjct: 101 YLLKRSAVDELEQAIRAVWAGHTYITPLIAKDLLDVLLTLGAGQAQQRKT---------- 150

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E L  ++EG+T+ +IA+ L IS  TV  + A +M +    T +  I YA+ +  
Sbjct: 151 LTFRQREVLQLLAEGRTAKDIALRLKISTRTVEFHKAQLMEQLNLHTTAELIKYALTHGF 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|218709897|ref|YP_002417518.1| LuxR family transcriptional regulator [Vibrio splendidus LGP32]
 gi|218322916|emb|CAV19093.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
          Length = 212

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE   L  +++G++S EIA  L IS  TV  +  +I  K    + +    YAV + 
Sbjct: 150 PLSRREEAVLKLVAKGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVSSG 209

Query: 245 IV 246
           +V
Sbjct: 210 LV 211


>gi|159037162|ref|YP_001536415.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157915997|gb|ABV97424.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 212

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 14/130 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +            R   L   V R+  G  LL P               +       
Sbjct: 91  FAAIMAGAAGYVLKQIRGTDLVDAVRRVAAGQSLLDP--------------AITTRVLER 136

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +S      +   LT +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + 
Sbjct: 137 IRSGVEQPRELKSLTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSMLAKLGLER 196

Query: 233 RSGAIAYAVR 242
           R+ A   A R
Sbjct: 197 RTQAAVLATR 206


>gi|284042767|ref|YP_003393107.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946988|gb|ADB49732.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 442

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L  R+ E L  ++EG  + EIA  L +S +TV  ++  I+R+     R+ A+A+ VR
Sbjct: 377 ERRLGARQHEVLGLMAEGLGNAEIATRLFLSESTVKWHVKKILRELHAANRAEAVAHYVR 436


>gi|157377077|ref|YP_001475677.1| LuxR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319451|gb|ABV38549.1| transcriptional regulator, LuxR family [Shewanella sediminis
           HAW-EB3]
          Length = 221

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 14/168 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARI 140
            F L+     +   K   +L        PV  +    + + P   +      L +   R 
Sbjct: 47  SFYLISQEGAALDSKGIPLLASRLVPHVPVALYQVDRDKLEPETALLLGIRGLLYADQR- 105

Query: 141 RIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVE 192
              + LL    R ++ D LW +  L++    ++ K  D       E       LT RE  
Sbjct: 106 ---MDLLLTGLRKMVADELWYDRTLISKMFRHLVKRLDSANDYSQETVAMLEMLTKRERT 162

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 163 IIQLVSSGARNKEIAHNLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|118616214|ref|YP_904546.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           ulcerans Agy99]
 gi|118568324|gb|ABL03075.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           ulcerans Agy99]
          Length = 216

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I++G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  +
Sbjct: 155 LSAREREVLHRIAKGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGL 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|318057614|ref|ZP_07976337.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079841|ref|ZP_07987173.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 215

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
              P    L   +    G D    +    +      +   F   +++   R    G  A 
Sbjct: 71  TVLPRLARLAPVLVITYGRDAELHARARRLGAAGCLVHGDFTVPQLVGAVRHLRAGAPA- 129

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                 K   V       L+ RE E +  I+ G  + +IA    I+  TV N+I  I  K
Sbjct: 130 LPPPSQKQSPVRPSWGGPLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAK 189

Query: 228 TATKTRSGAIAY 239
             T TRS AIA 
Sbjct: 190 LQTTTRSEAIAR 201


>gi|212640042|ref|YP_002316562.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561522|gb|ACJ34577.1| DNA-binding response regulator, NarL family, with truncated
           N-terminal REC domain [Anoxybacillus flavithermus WK1]
          Length = 165

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L   E+  L  +S   T+ +I+  L IS+ TV  +++S   K    +R+GAIA A+R  
Sbjct: 103 KLNDTEIRILQMVSNDFTNRQISEKLNISKRTVERHLSSCFEKLGAHSRAGAIAAAMRLK 162

Query: 245 IV 246
           ++
Sbjct: 163 LI 164


>gi|254467347|ref|ZP_05080758.1| nitrate/nitrite response regulator protein, putative
           [Rhodobacterales bacterium Y4I]
 gi|206688255|gb|EDZ48737.1| nitrate/nitrite response regulator protein, putative
           [Rhodobacterales bacterium Y4I]
          Length = 204

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 17/192 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF-----------C 110
           +L   +      +  I   D  F LV   A +E      V++ P ++             
Sbjct: 1   MLADANPLVLSAMSEIFEKDPRFSLVATSATAEGFL-GTVMRVPVQVGIIDWNLPALGGA 59

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
            +   L +    P  +   Y   + DV R  +         R    D L +  L  A   
Sbjct: 60  KLIEVLRDQANAPRLV--VYADDSGDVPRKAMSAGAAGFAPRSSAVDGLLDTCLAVAAGK 117

Query: 171 NMFKSYDVHW---GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +F   DV         +L+ RE   L  +S+G T+ E++  L IS NTV  +++++  K
Sbjct: 118 MVFPFLDVRGLQTDPIEQLSRRERTMLEALSKGLTNKELSKELEISTNTVKFHLSNLYEK 177

Query: 228 TATKTRSGAIAY 239
            + K R+ AIA+
Sbjct: 178 LSVKNRAQAIAF 189


>gi|108800345|ref|YP_640542.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119869473|ref|YP_939425.1| response regulator receiver protein [Mycobacterium sp. KMS]
 gi|126435968|ref|YP_001071659.1| response regulator receiver protein [Mycobacterium sp. JLS]
 gi|108770764|gb|ABG09486.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS]
 gi|119695562|gb|ABL92635.1| response regulator receiver protein [Mycobacterium sp. KMS]
 gi|126235768|gb|ABN99168.1| response regulator receiver protein [Mycobacterium sp. JLS]
          Length = 542

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASI 224
           + Y     +   V       LT RE++ L  I+ +G ++ ++A  + IS  TV  ++A+I
Sbjct: 461 SIYAHLGVEPATVCGRPPGGLTKREIDILRRIAADGASNRQLAQQMFISEKTVGRHLANI 520

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
             K    +R+ A+A+A ++NI
Sbjct: 521 YLKLQVSSRAAAVAWAHQHNI 541


>gi|148271269|ref|YP_001220830.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|31559720|gb|AAP57292.1|AF393183_4 response regulator RegB [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829199|emb|CAN00110.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 223

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 59/172 (34%), Gaps = 3/172 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  +   +    L     L    F    E +       + + + + 
Sbjct: 48  DVVLMDLRMPILDGVGATAALRADPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSA 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECL 194
           D   +   +  +      +         +++  +     + DV    +   LT RE + +
Sbjct: 108 DSESLIAAVEAVAKGDTSLSAGA--AKTVVSDLRRRGRSATDVELIARTATLTHRETDVV 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              + G  +  IA  L IS  TV  ++   M K   + R   ++ A R+ +V
Sbjct: 166 LGAARGLDNVSIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV 217


>gi|303238259|ref|ZP_07324795.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302594305|gb|EFL64017.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 215

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 8/217 (3%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS-- 93
           MI +       +   +L   +   H L V       ++   I SS  P  ++  + +   
Sbjct: 1   MIRVAIVDDQKLLSESLKSIIENDHDLKVIGCASNGREALEICSSSKPDIVLMDIKMPVC 60

Query: 94  -EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFP 149
              +    + ++  E+   +  T  ++      + N    Y         +   +     
Sbjct: 61  DGIEGTRMIKEKYPEIKVLILTTFEDDQNVYEALKNGADGYILKDITPEELIQAVKNASR 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              I  R     +           +  D       +L  REVE +  I+EG ++ EIA  
Sbjct: 121 GFSIFSRSPFGSVVKKINDADESAEKNDNPIS--IDLKEREVEIIRMIAEGMSNKEIASK 178

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +S     N I+ I+ K     R+   ++A +N ++
Sbjct: 179 LCLSFGRTKNIISEILAKLDLSDRNQLASFAFKNKLI 215


>gi|265751338|ref|ZP_06087401.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
 gi|263238234|gb|EEZ23684.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
          Length = 197

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 159 LWEIGLLAAYQANMFKSY---DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISR 214
           + +I  L  Y     K      +H  K + EL+ RE+E L  I++G  + EIA  L IS 
Sbjct: 101 IKDIHQLRQYGHQARKQAVDKAMHIEKTEHELSIREIEVLILITKGLINKEIADKLHISL 160

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV ++  +I  K   K+ SG   YAV N  +
Sbjct: 161 TTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 192


>gi|228984929|ref|ZP_04145099.1| Response regulator [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228774879|gb|EEM23275.1| Response regulator [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 212

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICGETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I       +N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|160888907|ref|ZP_02069910.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492]
 gi|270293670|ref|ZP_06199872.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479365|ref|ZP_07938499.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|156861806|gb|EDO55237.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492]
 gi|270275137|gb|EFA20997.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904439|gb|EFV26259.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 220

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           KD  LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  YA+
Sbjct: 149 KDDLLTTAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLGVNNAHEATKYAM 208

Query: 242 RNNIV 246
           +  IV
Sbjct: 209 KAGIV 213


>gi|325678873|ref|ZP_08158471.1| transcriptional regulator, LuxR family [Ruminococcus albus 8]
 gi|324109377|gb|EGC03595.1| transcriptional regulator, LuxR family [Ruminococcus albus 8]
          Length = 209

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E T RE+E L  ++ G T+ ++A  LGIS NTV +++ S++ KT  ++R+     A    
Sbjct: 144 EFTERELEILRVVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRTELAIKARVIG 203

Query: 245 I 245
           I
Sbjct: 204 I 204


>gi|291002981|ref|ZP_06560954.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 213

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 8/161 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGL 144
           VR    +  +    +  R   L C +  +  ++      +        L   V+   +  
Sbjct: 52  VRLPDGNGVELCRELQSRRPGLRCLMLTSFDDHDALMDAIIAGAAGFVLKGVVSEELVNA 111

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +     G  +L  +  E  +LA  +    ++  +      ELT RE E L  I EG T+ 
Sbjct: 112 IRTAGSGESLLSAKKTE-AMLAWLRREQEQADPLR-----ELTAREREVLELIGEGLTNR 165

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EI+  + ++  TV NY++ ++ K A + RS A   A    +
Sbjct: 166 EISQRMFLAEKTVKNYVSQMLSKLAMRHRSEAAVLATELRL 206


>gi|290955569|ref|YP_003486751.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645095|emb|CBG68181.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 4/166 (2%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCP-VFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           P  +V  + +   D         +    P V      ++        R  +  F + +  
Sbjct: 49  PDVVVMDIRMPRMDGVAATRSIRSASSPPAVLALTTFDLDEYLFGTLRAGAAGFVLKQ-- 106

Query: 142 IGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                L    R + R +     G        +    D  +    E+T RE + L  +   
Sbjct: 107 DSAATLLEGIRAVARGEGFVSPGPTRRLIERVSVPEDTPYQLPAEVTRRERDVLALLGRA 166

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ +IA  L I  +TV  ++ +++ K   +TR  A   A R  +V
Sbjct: 167 MSNTQIAHRLHIEESTVKYHVQNLLTKLDARTRVQAALIASRAGMV 212


>gi|239933385|ref|ZP_04690338.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291441749|ref|ZP_06581139.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291344644|gb|EFE71600.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 221

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE   L +I+EG ++ +IA  + +S  TV +++++I+ K    +R  A   A R  
Sbjct: 151 PLTDRERAVLGFIAEGLSNTDIAARMHLSTGTVKDHVSAILTKLEVGSRVQAALLAERAG 210

Query: 245 IV 246
           ++
Sbjct: 211 LL 212


>gi|149012406|ref|ZP_01833437.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147763462|gb|EDK70398.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
          Length = 199

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A
Sbjct: 130 EVVMMHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEA 189

Query: 237 IAYAVRNN 244
              A  + 
Sbjct: 190 ANIAKESG 197


>gi|149004513|ref|ZP_01829227.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147757571|gb|EDK64593.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
          Length = 189

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A
Sbjct: 120 EVVMMHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEA 179

Query: 237 IAYAVRNN 244
              A  + 
Sbjct: 180 ANIAKESG 187


>gi|126665152|ref|ZP_01736135.1| ATP-dependent transcriptional regulator, MalT related, LuxR family
           protein [Marinobacter sp. ELB17]
 gi|126630522|gb|EBA01137.1| ATP-dependent transcriptional regulator, MalT related, LuxR family
           protein [Marinobacter sp. ELB17]
          Length = 970

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ++ RE   L  I+ G ++ E+A  L IS +TV  +   I  K   K+R+ AI  A    
Sbjct: 909 PISEREKGVLECIARGLSNQEVADKLHISLHTVKTHARRINAKLGVKSRTQAIVRARELG 968

Query: 245 IV 246
           ++
Sbjct: 969 VL 970


>gi|189424620|ref|YP_001951797.1| LuxR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189420879|gb|ACD95277.1| two component transcriptional regulator, LuxR family [Geobacter
           lovleyi SZ]
          Length = 199

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G +S  I   LGIS  TV+N+  +IM K    T +  + YAV+  +
Sbjct: 139 LTDREREVIRLVACGMSSRLIGETLGISNKTVDNHRTNIMGKLHIHTTAELVRYAVKLGL 198


>gi|238918900|ref|YP_002932414.1| hypothetical protein NT01EI_0965 [Edwardsiella ictaluri 93-146]
 gi|84663108|gb|ABC60090.1| EsrB [Edwardsiella ictaluri 93-146]
 gi|238868467|gb|ACR68178.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 214

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 15/169 (8%)

Query: 83  PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCS--LTFDV 137
           P  ++  + L   D       + +R  ++   V     E       +     +  L    
Sbjct: 54  PDLVLLDLGLPGMDGVDVIRQLRRRWNDMRIVVVTASSEARRGSDALAAGALAYVLKQSP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +  +  M     G+  +   L    L A+              ++  LT RE + L  +
Sbjct: 114 QQTLLAAMQHASLGKTFVDPALRLDSLEAS----------SDIAQEPPLTLRERQILKLV 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG  + +IA +L IS  TV  +  ++MRK      +    +A R  ++
Sbjct: 164 AEGNRNRDIAELLSISLKTVETHRLNLMRKLDAHNAAELSNWARRLGVL 212


>gi|329851959|ref|ZP_08266640.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328839808|gb|EGF89381.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 219

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 46/100 (46%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++    R I +        +A    + F++       D  LTGRE E L  ++ G T  E
Sbjct: 119 MIVHYLRRIEQGEPPLSPSIALRLLDHFRTQAPKADPDVALTGRETETLALLARGLTIAE 178

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +A  LG++ +TV  Y+  I +K    TR  A  +AV+  +
Sbjct: 179 VARHLGLAHSTVAGYVKLIYQKLNISTRVEATLHAVKRGL 218


>gi|296163112|ref|ZP_06845884.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295886658|gb|EFG66504.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 490

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            L A +  + +           L+ RE++ L  IS G ++ E A  L +S +TV  ++ S
Sbjct: 408 ALVAERVPVARRTARSAPHGPRLSAREIDVLRAISRGASNKEAAQELTMSPSTVRTHVES 467

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           + RK    TR+ A   A    ++
Sbjct: 468 VFRKLECSTRAAATLKASTMGLI 490


>gi|148272305|ref|YP_001221866.1| LuxR family transcriptional regulator [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830235|emb|CAN01168.1| putative transcriptional regulator, LuxR family [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 392

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  +    +  L+ RE E L  ++ G  +  IA  LGIS NTV  ++A+++RK    TR
Sbjct: 324 PAAGLDAAGEAGLSAREREVLALVAGGSRNRAIATALGISENTVKFHVANLLRKMGASTR 383

Query: 234 SGAI 237
           +   
Sbjct: 384 AELA 387


>gi|85706357|ref|ZP_01037451.1| nitrate/nitrite regulatory protein [Roseovarius sp. 217]
 gi|85669130|gb|EAQ23997.1| nitrate/nitrite regulatory protein [Roseovarius sp. 217]
          Length = 216

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E L  + +G T+ +I+  LG+S NTV  Y+ +I +K    +R GAIA 
Sbjct: 157 LTRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGGAIAK 210


>gi|319901028|ref|YP_004160756.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
 gi|319416059|gb|ADV43170.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
          Length = 200

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  +++G  + EIA  L IS  TV ++  +I  K   K+ SG   YA+ + 
Sbjct: 134 ELSAREIEVLVLVTKGFINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTIYAIMHG 193

Query: 245 IV 246
            V
Sbjct: 194 YV 195


>gi|312884591|ref|ZP_07744295.1| transcriptional regulator, LuxR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367903|gb|EFP95451.1| transcriptional regulator, LuxR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 215

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 10/157 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGLMLLF 148
            +S  +    + +R  E+   V     E       +D       L        +  +   
Sbjct: 66  GMSGVEAIRQLRKRWPEMMIIVLTASEEEHKAREALDAGANGYVLKNGSKSTLLAAIKSV 125

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +G+  L   L    + A  Q        V  G    LT RE + L  I EGK + +IA 
Sbjct: 126 TRGKQFLDPSLDASHIEALGQ--------VAEGDIPVLTPREKQVLKLIFEGKRNRDIAE 177

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L I   TV  +  +IMRK      +  + +A R  I
Sbjct: 178 ALLIGLKTVETHRMNIMRKLDAHNVADLMKWAHRMGI 214


>gi|269128746|ref|YP_003302116.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313704|gb|ACZ00079.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 220

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE + L  + +G ++ EIA  L +   TV  Y+++I+++   + R  A   A    +
Sbjct: 158 LTGRERDVLGLLGQGLSNAEIAARLHLVEGTVKGYVSTILQRLNVENRVQAAILAYEAGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|226362645|ref|YP_002780423.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226241130|dbj|BAH51478.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 786

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY-A 240
           +   LT RE E    +++G ++ +IA  L ISR TV+ ++  I  K A  +R+   A+ A
Sbjct: 715 EPSPLTKREQEIAELLAQGLSNKQIAEALVISRRTVDGHVEHIFDKLAVGSRTQVAAWVA 774

Query: 241 VRNN 244
            R +
Sbjct: 775 ARAH 778


>gi|153834026|ref|ZP_01986693.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
 gi|148869670|gb|EDL68656.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
          Length = 214

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G +++++A  L +S  T+ +++  I +K + K R  AIA+A +N
Sbjct: 152 VDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQN 211


>gi|13475464|ref|NP_107028.1| two-component regulator [Mesorhizobium loti MAFF303099]
 gi|14026216|dbj|BAB52814.1| two-component regulator [Mesorhizobium loti MAFF303099]
          Length = 223

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
             E    V        +   G D     L   +A  R G +    +    L   L+E   
Sbjct: 80  LQEQRQDVIRCGRAGFSGYVGRDASVEDLCCALANARCGKLSCSAEISGGLLRALFE--- 136

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                    +           LT RE E L  I  G ++ EIA+ L +S  TV +++ +I
Sbjct: 137 --------MERNTRPAESTKALTQREGEVLQLIGNGLSNKEIALDLSVSVATVKHHVHNI 188

Query: 225 MRKTATKTRSGA 236
           ++K     R+ A
Sbjct: 189 LQKLKLPRRTQA 200


>gi|86148053|ref|ZP_01066355.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|85834186|gb|EAQ52342.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
          Length = 212

 Score = 80.0 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE   L  +++G++S EIA  L IS  TV  +  +I  K    + +    YAV + 
Sbjct: 150 PLSRREEAVLKLVAKGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVSSG 209

Query: 245 IV 246
           +V
Sbjct: 210 LV 211


>gi|332668711|ref|YP_004451718.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332337748|gb|AEE44331.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484]
          Length = 207

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
              G+  R  +    + R+  G           L  RL +   +   Q  + +   + + 
Sbjct: 88  GVLGLVRRAEATPDRLVRVICGAATGEGSVPPDLLGRLLD--QVGTLQRQVLRPRGLTF- 144

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L  RE+E L  +++G  + EIA  L  S  TV N +  +  +   + RS A+AYA+
Sbjct: 145 --TGLASREIEVLKLVADGYDTAEIAQHLSYSERTVKNVLHDVTTRLQLRNRSHAVAYAL 202

Query: 242 RNNIV 246
           R  ++
Sbjct: 203 REGLI 207


>gi|229029518|ref|ZP_04185599.1| Response regulator [Bacillus cereus AH1271]
 gi|228731800|gb|EEL82701.1| Response regulator [Bacillus cereus AH1271]
          Length = 212

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I        N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------CNLMESKEEECKIDTSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|254447404|ref|ZP_05060870.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
 gi|198262747|gb|EDY87026.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
          Length = 213

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 6/164 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  + +  K +  +    P  +    F                Y     
Sbjct: 49  DVVLMDIRMPGLSGLDVLRKLRASDDNTPPV-ILLTTFEDQDTLQQAIRLGAKGYLLKDV 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +  + +  + L   G+ +  +R+           +         G  ++LT REV  + 
Sbjct: 108 TLDNL-LASLELVMAGQSVFDNRINH----RTDDVSAASRSQASLGDAYDLTAREVNIIE 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +SEG ++ EIA  L +   TV NY++S++ K   + R+ A+  
Sbjct: 163 LMSEGASNKEIAFRLDLKMGTVKNYVSSVLLKLGVRDRTQAVIK 206


>gi|134100027|ref|YP_001105688.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912650|emb|CAM02763.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 217

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 8/161 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGL 144
           VR    +  +    +  R   L C +  +  ++      +        L   V+   +  
Sbjct: 56  VRLPDGNGVELCRELQSRRPGLRCLMLTSFDDHDALMDAIIAGAAGFVLKGVVSEELVNA 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +     G  +L  +  E  +LA  +    ++  +      ELT RE E L  I EG T+ 
Sbjct: 116 IRTAGSGESLLSAKKTE-AMLAWLRREQEQADPLR-----ELTAREREVLELIGEGLTNR 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EI+  + ++  TV NY++ ++ K A + RS A   A    +
Sbjct: 170 EISQRMFLAEKTVKNYVSQMLSKLAMRHRSEAAVLATELRL 210


>gi|111224247|ref|YP_715041.1| LuxR family transcriptional regulator [Frankia alni ACN14a]
 gi|111151779|emb|CAJ63499.1| Putative LuxR-family transcriptional regulator (partial) [Frankia
           alni ACN14a]
          Length = 137

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            R+R+  + L      +    L    L + +   +   +        F LT RE+E LT 
Sbjct: 27  ERVRLAQIELLELSAQLTTPHLRRQILRIYSLLRSEPVTQSPAKPPPFRLTLREMEVLTL 86

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ E A  L I   TV  Y+ SIMRK   + R+ A+  A +  ++
Sbjct: 87  VATGCSNVEAAEQLTIRAETVKTYMRSIMRKMGVRNRTAAVHTARQIGLL 136


>gi|160881748|ref|YP_001560716.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430414|gb|ABX43977.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 232

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVRN 243
           ELT RE E    I+EG T+ +IA  L IS  TV NYI+SI  K     R+  A+A    N
Sbjct: 170 ELTKREHEICAMIAEGFTNSQIASFLYISEGTVKNYISSIYDKLQIHDRAALAVALTKTN 229

Query: 244 NIV 246
            I+
Sbjct: 230 RII 232


>gi|300788717|ref|YP_003769008.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798231|gb|ADJ48606.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 22/165 (13%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMD---NRYCSLTF 135
            P   +  + L  KD     ++      ++   +  +L    T    +D   N +     
Sbjct: 47  HPDVAIIDIDLPGKDGLSAAIEIHESLPDVHTLILTSLGRPGTVRRALDAKVNGFLLKDA 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              ++   +  +    R+I  +       LAA++ +           D  LT RE+E L+
Sbjct: 107 PSDKLANAVRSVAIGRRVIDSE-----LALAAWETD-----------DCPLTPREIEILS 150

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             + G+T  +IA  L +S  TV NY+A+++ K   + R  AI  A
Sbjct: 151 LAARGRTVSDIASELFLSAGTVRNYLAAVVTKLNARNRVHAIRIA 195


>gi|111022468|ref|YP_705440.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821998|gb|ABG97282.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 211

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
             + R      LA   A   +      G    L+GRE E L  I+ G++   IA  L ++
Sbjct: 120 CAQGRDVLPASLAVGLAGEVRRRSEPVGP--ALSGREKEVLALIARGQSIPTIAGELYLA 177

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +TV  ++  +  K     R+ A+A A+R  ++
Sbjct: 178 PSTVKTHVQRLYEKLGVSDRAAAVAEAMRRGLL 210


>gi|108805868|ref|YP_645805.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108767111|gb|ABG05993.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 226

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+++ L  IS GKT  EI+  L +S  TV N++ +++R     ++  A+A A    +
Sbjct: 164 LTPRQLDVLQLISRGKTVREISQELYLSEATVRNHVGAVLRALDAHSQLEAVARARELGL 223

Query: 246 V 246
           +
Sbjct: 224 L 224


>gi|326441021|ref|ZP_08215755.1| transcriptional regulatory protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 1010

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             +     +  +   S D+    +  LTGRE E    ++EG T+ EIAV L +S +TV  
Sbjct: 915 ASLSAAVPFGVDSRSSADLPGALEGGLTGRETEVALLLAEGLTNREIAVRLRLSPSTVAT 974

Query: 220 YIASIMRKTATKTRSGAIAYAVRNN 244
           ++  I  K   ++R+    +  +N+
Sbjct: 975 HLNHIRDKLNIRSRTRIALWVTKNH 999


>gi|297569017|ref|YP_003690361.1| two component transcriptional regulator, LuxR family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924932|gb|ADH85742.1| two component transcriptional regulator, LuxR family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 207

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 16/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +           L   +  + +G   + PK    L     E G L      
Sbjct: 89  VFAALKAGASGYLLKGCSPRELIESIQELHLGGAPMSPKIARRLIMEFREKGSL------ 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   L+ REVE +  + +G +  +IA  L IS +TV+++I  I  K    
Sbjct: 143 ----------QQNLLSTREVEIIREVEKGFSYKDIAAKLFISPHTVHSHIKKIYEKLHAM 192

Query: 232 TRSGAIAYAVRNNIV 246
            R  AI  A +  ++
Sbjct: 193 DRQDAILKARKCGLL 207


>gi|227504946|ref|ZP_03934995.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198455|gb|EEI78503.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 225

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 4/154 (2%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIGLMLLFPKGRI 153
               +     E    +  T  +     AG+            +   +   L  ++    +
Sbjct: 64  ATAEIASSLPETKVIILTTFDDEDYVVAGLRAGASGFVLKDAEPEELLSALRTVYRGDAV 123

Query: 154 IL-RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           I  R     +  +     +              LT RE E L  I  G ++ EI+  + I
Sbjct: 124 ISPRATKRLVHSMRDDSTDTLSISGTDRRVLESLTAREQEILEAIGMGWSNTEISERMFI 183

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  ++  ++ KT+++ R  A  +A R  +V
Sbjct: 184 SMPTVKTHVGRVLAKTSSRDRVHAALFAYRTGVV 217


>gi|183984750|ref|YP_001853041.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           marinum M]
 gi|183178076|gb|ACC43186.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           marinum M]
          Length = 216

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I++G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  +
Sbjct: 155 LSAREREVLHRIAKGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGL 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|303246240|ref|ZP_07332520.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302492303|gb|EFL52175.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 218

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 9/135 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +   +          D     L   + ++  G   L P    I ++   E+         
Sbjct: 92  IIEAVKAGANGYVTKDAAADQLLEALRQVGRGAFYLDPT---ISQEVSREL------LVG 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K+          LT RE E +  + EG T+ E+A  L IS  T  ++  ++MRK   +
Sbjct: 143 SPKAQAAPANAYDNLTAREREVMRMVVEGLTTKEVAEALAISVKTAEHHRCNLMRKLGLQ 202

Query: 232 TRSGAIAYAVRNNIV 246
                + YA R  ++
Sbjct: 203 NSVELVRYASRLGLI 217


>gi|298384248|ref|ZP_06993808.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298262527|gb|EFI05391.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 216

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 145 MLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           M+L       +R  L  + L    L      +  S          LT  E + L  I+ G
Sbjct: 104 MILKESSGEEIRSALKCMALGERFLCYQITELLISNSGRPEHHSVLTATETDILKLIARG 163

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K+  EIA     S +T+  +  +I RK        A  YA+R  +V
Sbjct: 164 KSVKEIAAERISSVHTIVTHKKNIFRKLGVNNVYEATRYALRAGLV 209


>gi|297158227|gb|ADI07939.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 249

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  + EG  + +IA  +G++ +TV +++ +++ K     R  A   A R  +
Sbjct: 152 LTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRALLAKLGGVNRVQAAIVADRAGL 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|288926074|ref|ZP_06420002.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
 gi|288337114|gb|EFC75472.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
          Length = 208

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L+ +++GK + EI   L I   TV  +  +I  K   K+ S    YAV    
Sbjct: 143 LTDREIEVLSLVAQGKINKEIGETLNIGLTTVITHRKNIQEKLGLKSVSALTIYAVMRGY 202

Query: 246 V 246
           V
Sbjct: 203 V 203


>gi|163737546|ref|ZP_02144963.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|163740818|ref|ZP_02148211.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161385809|gb|EDQ10185.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161389072|gb|EDQ13424.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 238

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 10/173 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           EQ +  I  +  P  +V  + L +      +++       P+       +   +  DNR 
Sbjct: 60  EQAIAEIADTATPDAVVLDLNLPDVHGLDGLIRLRNATSAPI-------LVVSSMADNRV 112

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV---HWGKDFELT 187
            S                 +  I   D +            +           G+   LT
Sbjct: 113 ISAAIHAGAAGFVPKHSQREIYISAFDAIARGTPFVPPGYVLLPRDSETQDATGRLATLT 172

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++   L  I  GK + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A
Sbjct: 173 NQQARILQLICAGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIA 225


>gi|330888889|gb|EGH21550.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 197

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 1/161 (0%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            ++ +   E  ++   +Q   ++     HT P+ I     +  R   L    A      +
Sbjct: 34  WMKSVDGLEALQHLLKVQPHCKVLILSMHTDPDMIMRALDIGARGYLLKDTTATELEQAL 93

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                    L   +    +  A +            + + LT R++E L  I  GK++ E
Sbjct: 94  EALRNNERYLSPAIAHTVIERALRGTRSDRAQAAKER-YHLTARQLEILRLIVRGKSTRE 152

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  LG+S  T+  + + +M++      +G + + VR  I+
Sbjct: 153 IADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRERII 193


>gi|309799510|ref|ZP_07693740.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308116866|gb|EFO54312.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 199

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +EV  L  +++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A    
Sbjct: 177 ILSKLNASNRTEAAKTAEEEG 197


>gi|282862429|ref|ZP_06271491.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562768|gb|EFB68308.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 247

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 79/238 (33%), Gaps = 17/238 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D+   S  S  P+R     R+  LD        +  L E   A   + V  +    ++  
Sbjct: 3   DDPAQSRTSTPPSRPASPVRVFILDDHEVVRRGVRDLLE---ADGGIEVVGEAGDAREAL 59

Query: 76  SIVSSDWPFDLVRCMALSE-KDKYYNVLQRPTELFCPV----------FHTLPENITPPA 124
           + V +  P   V  + L + +   +  ++   EL   +          F           
Sbjct: 60  ARVPAVAPQVAVLDVRLGDDRGGDHAGIEVCRELRARMPGLACLMLTSFDDDEALFDAIM 119

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     + A +   +  +     ++       +  +A  +            +  
Sbjct: 120 AGAAGYVLKQINGADLVAAVHTVASGTSMLDPRTTARV--MARLRGPQQPPA-AEASELD 176

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LT RE + L  I EG T+ EIA  L ++  TV N I++I+ K     R  A   A R
Sbjct: 177 RLTPRERQILDLIGEGLTNREIAERLFLAEKTVKNRISAILAKLGVGRRIQAAMLAGR 234


>gi|149914980|ref|ZP_01903509.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp.
           AzwK-3b]
 gi|149811168|gb|EDM71005.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp.
           AzwK-3b]
          Length = 219

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ + 
Sbjct: 150 QLTNREQTILLQLAQGKSNKDVAHTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHG 209

Query: 245 IV 246
           ++
Sbjct: 210 VL 211


>gi|29827823|ref|NP_822457.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29604924|dbj|BAC68992.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 226

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  I+EG ++ +I   + +S  TV +++++I+ K     R  A   A R  +
Sbjct: 157 LTDRERAVLVLIAEGLSNADIGTRMHLSTGTVKDHVSAILTKLKVDGRVQAALLAERAGL 216

Query: 246 V 246
           +
Sbjct: 217 L 217


>gi|330995249|ref|ZP_08319160.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila
           YIT 11841]
 gi|329575966|gb|EGG57486.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila
           YIT 11841]
          Length = 209

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I  G T+ EIA  L I   TV ++  +IM K   ++ SG   YAV N  
Sbjct: 144 LSQREIEVLILIVRGLTNKEIADHLCIGTTTVISHRKNIMEKLNVRSVSGLTIYAVMNGY 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|323490881|ref|ZP_08096077.1| two-component response regulator [Planococcus donghaensis MPA1U2]
 gi|323395449|gb|EGA88299.1| two-component response regulator [Planococcus donghaensis MPA1U2]
          Length = 198

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  D+ +  +  LT RE + +  I+EG+++ EIA  L I+  TV NYI++I+ K     R
Sbjct: 126 ELVDLAYADENPLTDREKQVMELIAEGRSTKEIAKELFITTGTVRNYISTILDKLEVSNR 185

Query: 234 SGAIAY 239
             AI+ 
Sbjct: 186 IEAISR 191


>gi|300791071|ref|YP_003771362.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800585|gb|ADJ50960.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 217

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ +   + G T+ EI   L +S +TV  ++AS+  K   + R    A+A R+ 
Sbjct: 155 PLTARELDVVKAAARGLTNTEIGAELFMSLSTVKTHLASVQSKIGARNRVETAAWAWRSG 214

Query: 245 IV 246
           +V
Sbjct: 215 VV 216


>gi|288916995|ref|ZP_06411366.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288351535|gb|EFC85741.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 274

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 7/168 (4%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V+  +    +    +           R  E    V   L          +          
Sbjct: 112 VAVLYAALRISQREMGRLLDAVTDEARNLEQELAVGEVLRRLHDSQRDAEAERIRQARLA 171

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                  +L       +L  R+ E   L    A+  ++          LT RE + L  +
Sbjct: 172 DAHARLRVLAHEVDDPVLHARILETADLLTDPASDNRT-------QLHLTRREHDVLALL 224

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S G ++  IA  LGI   TV  ++ S+  K   + R  A+  A R  +
Sbjct: 225 SAGLSNQAIADRLGIGVYTVKGHLKSLYVKLHVEGRLEAVTAARRLGL 272


>gi|320012198|gb|ADW07048.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 987

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    ++EG T+  IA  L +S  TV  +++ + RKT   TR+G  A   R
Sbjct: 930 LTAREREVAGMVAEGLTNQAIATRLFLSPRTVETHVSRVFRKTGVATRAGLAALMAR 986


>gi|284032031|ref|YP_003381962.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283811324|gb|ADB33163.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 225

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L   V  +  G + L P     L D L     L   QA +             LTGRE E
Sbjct: 118 LAQAVRAVAGGGVFLSPMMAGPLLDWL--AAQLPIDQAPLL-------DAKLLLTGREQE 168

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  +  G+T+  IA +L IS  TV  ++  I  K   ++R+ A+    +  +
Sbjct: 169 VLKLLGAGRTNAGIAGVLVISEATVRTHVYRIQTKLGLQSRTEAVILGYQFRL 221


>gi|153832913|ref|ZP_01985580.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi
           HY01]
 gi|148870836|gb|EDL69735.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi
           HY01]
          Length = 210

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 12/131 (9%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEI--------GLLAA 167
                G + R   LT   +   I  ++       +L     D L E+           + 
Sbjct: 70  ALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHEGDKAYSQ 129

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A      +        LT RE + L  ++ G  + +IA  L IS +TV  ++ S+++K
Sbjct: 130 AVAKYLNEREGQEDVFDTLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKK 189

Query: 228 TATKTRSGAIA 238
               +R+ A  
Sbjct: 190 LKVPSRTAATV 200


>gi|84685343|ref|ZP_01013241.1| DNA-binding response regulator, LuxR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666500|gb|EAQ12972.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 203

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 77  IVSSDWPFDLVR-CMALSEKDKYYNVLQRPT-----ELFCPVFHTLPENITPPAG--MDN 128
           ++    PFDLV   + +   +   + L+R       +    +  T    I   A      
Sbjct: 40  LMEQSEPFDLVLLDLNMPGMNG-IDGLERAMKIGGDQRVALITGTATREIAQQALDLGAA 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   T     +   +  +    + +  D              M    +       +L  
Sbjct: 99  GFLPKTLSAKSLVNAVRFMAMGEQYVPVDF-------------MTAKEEAKHPLAEKLAE 145

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE++ L  ++EGK++ EIA  L ++  T+  Y+ ++ RK     R+ A   A    +
Sbjct: 146 REMQVLKGLTEGKSNKEIARDLDLTEPTIKLYLKTLYRKIDVNNRTQAALVAREAGL 202


>gi|116620395|ref|YP_822551.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223557|gb|ABJ82266.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 200

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 24/129 (18%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           L   ++     D    +L   + RIR G  ++ P+              LAA        
Sbjct: 94  LDAGVSGYLLKDAPASTLANAIRRIRAGARVIDPE--------------LAA-------- 131

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
               W +   LT RE + L    EG++  EIA +L +S  TV NY++  + K     R+ 
Sbjct: 132 --EAWTEADPLTDRERQVLRHAGEGRSGAEIAGLLNLSEGTVRNYLSEAISKLGAANRTE 189

Query: 236 AIAYAVRNN 244
           A   A +  
Sbjct: 190 AARIAHQRG 198


>gi|302345391|ref|YP_003813744.1| hemerythrin HHE cation binding domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149568|gb|ADK95830.1| hemerythrin HHE cation binding domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 318

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 85/222 (38%), Gaps = 14/222 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R +L A +   D      +R+Y   EY  + H        ++E+ +   V S    +   
Sbjct: 100 RKELCASLDETDNLARLILRLYD--EYAHSIH----NHMQYEEKNVFPYVDSLLKGEAND 153

Query: 89  CMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              +    K+++    +  EL   +   LP +       +NR  +  +D+      L   
Sbjct: 154 TYDVETYSKHHSQTDVKLRELKSIIIKYLPSDAHH----NNRLTATLYDIYNCEAWLEQH 209

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSD 204
                 I    +  +   +       K  ++          L+ RE + +  +++G T+ 
Sbjct: 210 ALVEEEIFIPVIRRLEQKSKQNDVSVKISNMITQNPVSNEVLSDREKDVIVAVAQGMTNK 269

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS NTV  +  +I RK    + +G   YA+ NN+V
Sbjct: 270 EIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNLV 311


>gi|258591000|emb|CBE67295.1| Two component transcriptional regulator, LuxR family [NC10
           bacterium 'Dutch sediment']
          Length = 216

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 5/180 (2%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +   D  Q   +   +  D     V    LS  +    + ++       +    P++   
Sbjct: 32  VGAADSDQAISMAEALQPDIVLLAVNIQELSALNALSLIRKKSPRTDVLILSGCPDDELM 91

Query: 123 PAGM---DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
            A +      Y S       +   + ++      I   R    G+L + +    ++    
Sbjct: 92  SAALQLGAKGYVSKMLSHKDLVKAIRVVHAGE--IWAGRKVLAGVLESLRHKTHETNRSF 149

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE E + W+ +G T+ EIA  L IS  TV  ++++I  K     R     +
Sbjct: 150 SETQEALTDREQEIVGWVIQGMTNKEIAARLEISDKTVKAHLSNIFSKLKISRRLELALH 209


>gi|227818474|ref|YP_002822445.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227337473|gb|ACP21692.1| putative transcriptional regulator protein, LuxR family
           [Sinorhizobium fredii NGR234]
          Length = 263

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 10/119 (8%)

Query: 133 LTFDVARIRIGLMLLFPKG------RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
           L  DV    I L++   +       R +    L   G+L    A+  +  D+    DF  
Sbjct: 126 LNLDVCLTAIDLLMKGGEHFPAALLRRLAPGGLAGSGVLGQKPASS-EDVDMERKTDFAQ 184

Query: 186 --LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             L  RE++ L  I  G  +  IA  LG+S NTV  ++ +I +K     R+ A +   R
Sbjct: 185 GLLRMREIQILDLICVGTPNKIIAHRLGLSENTVKVHVRNIYKKMNVHNRTEAASRCFR 243


>gi|167589242|ref|ZP_02381630.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 56

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 32/53 (60%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + W +EGKT+ EI +ILG++  T+N +I+  + K     ++ A+  AV   ++
Sbjct: 1   MRWAAEGKTAYEIGIILGLTERTINFHISRSIAKLDASNKTNAVVKAVLMGLI 53


>gi|300784158|ref|YP_003764449.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793672|gb|ADJ44047.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 236

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 89  CMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITP-PAGMDNRYCSLTFDVARIRIGL 144
            + L        VL+       +        PE +    A     + S   D   + I +
Sbjct: 72  DLGLPGVAGAAAVLEVCELGHHVLVVSAQAEPEVVLGAIAAGARGFLSKDVDADELLIAI 131

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW---GKDFELTGREVECLTWISEGK 201
             +   G             ++A  A M    +        + EL+ RE + L  ++ G+
Sbjct: 132 KTVADGG-----------AYVSAVVAGMIMKDNADRPAVSAEAELSPREEQVLRLVAAGE 180

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +IA+ILGI   TV  Y+  I  KT  + R G +  A+R  ++
Sbjct: 181 RDVDIALILGIGVRTVRGYLDRIRDKTGERRRPGLVKEAIRRGLI 225


>gi|255534018|ref|YP_003094390.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255347002|gb|ACU06328.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 252

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDV 178
                ++++   LT D        + +  +   + +    +I L+       F   S D 
Sbjct: 124 GEYVLLNHQALLLTLDENGRSGKSLNIHTRIDHLSKFNTRQISLIGLNGEPSFMDMSLDK 183

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                   + RE+E +  I++G  ++EIA  L I+  TV  +  +I+ K+  K  +  I+
Sbjct: 184 SIHDLPAFSRREMEIIRLIAQGLNNNEIAENLFIAVLTVKKHRKNILMKSNCKNTAELIS 243

Query: 239 YAVRNNIV 246
            +V   ++
Sbjct: 244 KSVIQGLI 251


>gi|329928019|ref|ZP_08282023.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5]
 gi|328938123|gb|EGG34520.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5]
          Length = 191

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G +S++IA  L +S  TV NY++ I+ K   K R  AI+ A    
Sbjct: 130 PLTEREREVLRLAADGNSSNDIAAKLHLSYGTVRNYMSEILSKLNAKNRIEAISLAEEKG 189

Query: 245 IV 246
            +
Sbjct: 190 WI 191


>gi|156740233|ref|YP_001430362.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156231561|gb|ABU56344.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 227

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE+E L  I+EG  + EIA  L IS NT   ++++I+ K     R  A    +R+
Sbjct: 153 ELTSRELEILQLIAEGLGNREIAARLDISYNTAMKHVSNILAKLKVSNRMEAGLLFLRH 211


>gi|221133626|ref|ZP_03559931.1| two component LuxR family transcriptional regulator [Glaciecola sp.
           HTCC2999]
          Length = 215

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE   L+ I+ G++S  IA  L IS  TV  +  +I  K      +  + YA+ 
Sbjct: 149 NERLTAREQMILSHIATGQSSKAIAHTLDISVRTVEAHRRNIKSKLNIDNLAELVRYAIE 208

Query: 243 NNIV 246
             +V
Sbjct: 209 QGLV 212


>gi|294812526|ref|ZP_06771169.1| regulatory protein, LuxR [Streptomyces clavuligerus ATCC 27064]
 gi|294325125|gb|EFG06768.1| regulatory protein, LuxR [Streptomyces clavuligerus ATCC 27064]
          Length = 1013

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 160  WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              +     +  +   S D+    +  LTGRE E    ++EG T+ EIAV L +S +TV  
Sbjct: 918  ASLSAAVPFGVDSRSSADLPGALEGGLTGRETEVALLLAEGLTNREIAVRLRLSPSTVAT 977

Query: 220  YIASIMRKTATKTRSGAIAYAVRNN 244
            ++  I  K   ++R+    +  +N+
Sbjct: 978  HLNHIRDKLNIRSRTRIALWVTKNH 1002


>gi|288803367|ref|ZP_06408800.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
 gi|288334187|gb|EFC72629.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
          Length = 313

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 85/222 (38%), Gaps = 14/222 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R +L A +   D      +R+Y   EY  + H        ++E+ +   V S    +   
Sbjct: 95  RKELCASLDETDNLARLILRLYD--EYAHSIH----NHMQYEEKNVFPYVDSLLKGEAND 148

Query: 89  CMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              +    K+++    +  EL   +   LP +       +NR  +  +D+      L   
Sbjct: 149 TYDVETYSKHHSQTDVKLRELKSIIIKYLPSDAHH----NNRLTATLYDIYNCEAWLEQH 204

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSD 204
                 I    +  +   +       K  ++          L+ RE + +  +++G T+ 
Sbjct: 205 ALVEEEIFIPVIRRLEQKSKQNDVSVKISNMITQNPVSNEVLSDREKDVIVAVAQGMTNK 264

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS NTV  +  +I RK    + +G   YA+ NN+V
Sbjct: 265 EIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNLV 306


>gi|157371824|ref|YP_001479813.1| two component LuxR family transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157323588|gb|ABV42685.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 210

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +   LT R+VE L  +  G  +  IA  L IS  TV  +I++I++K    +R  AI
Sbjct: 144 QHLNLTPRQVEVLAMMLRGFPNKRIASQLSISEPTVKEHISNILKKIGVNSRVEAI 199


>gi|111020427|ref|YP_703399.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819957|gb|ABG95241.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 763

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE E    +++G ++ +IA  L ISR TV+ ++  I  K A  +R+   
Sbjct: 688 APRAEASPLTKREQEIADLLAQGLSNRQIAEALVISRRTVDGHVEHIFDKLAVSSRTQVA 747

Query: 238 AY-AVRNN 244
           A+ A R +
Sbjct: 748 AWVAARAH 755


>gi|325474944|gb|EGC78130.1| hypothetical protein HMPREF9353_00977 [Treponema denticola F0402]
          Length = 140

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +F L+ +E+E +  +SEG ++ +IA   G+S  T+ N I+ I  KT    R+   A+A +
Sbjct: 77  EFGLSQKEIEIIRLVSEGLSNKQIAYKQGLSEGTIKNNISVIFDKTFVSDRTQLAAFAFK 136

Query: 243 NNIV 246
           N IV
Sbjct: 137 NGIV 140


>gi|291007043|ref|ZP_06565016.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 198

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +++G  + EIA  L  S  TV N +  +  +   + R  A+AYA+R  +
Sbjct: 138 LTTREIDVLRLMADGLDTAEIAQKLCYSERTVKNVVYGVTSRLNLRNRPHAVAYAMRAGV 197

Query: 246 V 246
           +
Sbjct: 198 I 198


>gi|239982955|ref|ZP_04705479.1| LuxR family two-component response regulator [Streptomyces albus
           J1074]
 gi|291454789|ref|ZP_06594179.1| luxR family two-component system response regulator [Streptomyces
           albus J1074]
 gi|291357738|gb|EFE84640.1| luxR family two-component system response regulator [Streptomyces
           albus J1074]
          Length = 237

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 4/149 (2%)

Query: 100 NVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
            +  R  EL C +  +  ++           + Y     + A +   +  +     ++  
Sbjct: 85  ELRARMPELVCLMLTSFDDDEALFDAIMAGASGYVLKQINGADLVSAVRTVASGTSMLDP 144

Query: 157 DRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                +   L    A+   +          L+ RE E L  I EG T+ EIA  L ++  
Sbjct: 145 RTTARVMARLRGGPADSQPAEPEQPSVLDRLSPREREILELIGEGLTNREIAERLYLAEK 204

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           TV N I++I+ K     R  A   A R  
Sbjct: 205 TVKNRISAILSKLGVGRRIQAAMIAGRLR 233


>gi|167763338|ref|ZP_02435465.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC
           43183]
 gi|167698632|gb|EDS15211.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC
           43183]
          Length = 203

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  YA++  I
Sbjct: 136 LTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLNVNNAHEATKYAMKAGI 195

Query: 246 V 246
           V
Sbjct: 196 V 196


>gi|328880209|emb|CCA53448.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 200

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L          D     L   V     G  L+ P            + LL A+   
Sbjct: 73  VYGALRAGARGFLLKDTGPDLLAQAVRSAADGEALIAPS---------VTVRLLQAFAD- 122

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          +T RE + L  ++ G T+ EIA  L IS +TV  ++AS+M K   +
Sbjct: 123 -LPAGRPVTQPVSPVTAREEQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGAR 181

Query: 232 TRSGAIAYAVRNNIV 246
            R     +A     +
Sbjct: 182 NRVEIAMWAYETRRI 196


>gi|296330481|ref|ZP_06872960.1| two-component response regulator (DesK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674733|ref|YP_003866405.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152378|gb|EFG93248.1| two-component response regulator (DesK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412977|gb|ADM38096.1| two-component response regulator (paired with DesK) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 199

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI  +    
Sbjct: 137 PLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKG 196


>gi|237711747|ref|ZP_04542228.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|229454442|gb|EEO60163.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
          Length = 262

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           IG M + P  +   +    E  +L      MF    V       LTGRE+E L  I  G 
Sbjct: 160 IGNMSMAPGQKESEQ---VECTVLNLRNGEMFSPGVVIMNPVVSLTGREMEILRLIQRGF 216

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S EIA  L IS +TV+ +  +++RK        AI     + ++
Sbjct: 217 LSKEIADKLCISIHTVHIHRQNLLRKLGVHNSLEAIRLGQESGLL 261


>gi|149201851|ref|ZP_01878825.1| nitrate/nitrite regulatory protein [Roseovarius sp. TM1035]
 gi|149144899|gb|EDM32928.1| nitrate/nitrite regulatory protein [Roseovarius sp. TM1035]
          Length = 213

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E L  + +G T+ +I+  LG+S NTV  Y+ +I +K    +R GAIA 
Sbjct: 154 LTRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGGAIAK 207


>gi|56461106|ref|YP_156387.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56180116|gb|AAV82838.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           loihiensis L2TR]
          Length = 210

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +   A I   +  +      + ++    + +++               K  ELT 
Sbjct: 101 GFIPKSLPSAEIAEAIDTILQGDTWVPKENRERLDVISD-------EDQQLAQKVSELTP 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++   L ++ EG  + +IA  LGI+  TV  +I +I RK    +R+ A+  A R  +
Sbjct: 154 QQYRVLHFLHEGLLNKQIAYQLGITEATVKAHITAIFRKLGVYSRTQAVLVAERLQL 210


>gi|332980886|ref|YP_004462327.1| LuxR family transcriptional regulator [Mahella australiensis 50-1
           BON]
 gi|332698564|gb|AEE95505.1| transcriptional regulator, LuxR family [Mahella australiensis 50-1
           BON]
          Length = 479

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 112 VFHTLPENI--TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
           VF  L   +     A  D++  S T     +    + + P     L   L +   L A  
Sbjct: 338 VFGVLLGGVIGNGIASADSQGISSTLLALAVVCVTLAVLPPLHKRLSSLLSDHAYLTAIS 397

Query: 170 ANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
               K  D    K  EL   T RE E +  + EGKT   IA  L +S NTV  +I ++  
Sbjct: 398 ETSQKEMDTVMRKFIELGQLTKRESEIVALLLEGKTYRMIAGELHLSENTVKTHIKNVYA 457

Query: 227 KTATKTRSGAI 237
           K   ++R+  I
Sbjct: 458 KYKIQSRAELI 468


>gi|309776463|ref|ZP_07671449.1| putative transcriptional regulator, LuxR family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915854|gb|EFP61608.1| putative transcriptional regulator, LuxR family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 841

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +LRD L         +   ++S D+   +D  L+ RE+E L  +++G ++  IA
Sbjct: 744 WHGTSSLLRDCLKRAS---EKERAFWRSLDIPL-QDPILSERELEVLQELAQGNSNKVIA 799

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS  TV  +I +I  K     R  A+ Y  R ++
Sbjct: 800 EHLYISLATVKTHILNIYGKLQVTNRVEALNY-YREHL 836


>gi|295108610|emb|CBL22563.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus obeum A2-162]
          Length = 206

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +  RE E +  I++G ++ EIA  L +S  TV NY++SI+ K   + R+    +  ++ 
Sbjct: 148 INEREKEIIRLIADGNSNKEIAAELYLSEGTVRNYLSSILNKLQLRDRTQVAVFYYQHK 206


>gi|237650688|ref|ZP_04524940.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237821211|ref|ZP_04597056.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 199

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A
Sbjct: 130 EVVMMHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEA 189

Query: 237 IAYAVRNN 244
              A  + 
Sbjct: 190 ANIAKESG 197


>gi|213966477|ref|ZP_03394650.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum
           SK46]
 gi|213950876|gb|EEB62285.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum
           SK46]
          Length = 278

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 81/218 (37%), Gaps = 12/218 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVR------WDLFQEQKLDSIVSSDWPFD-LVRCMA 91
           ++       R+ A    VG S +L  +       D  +++ L S+V+       LVR + 
Sbjct: 58  VESGAGVGGRVLATRRPVGVSDYLRAKVITHEYDDKIRDEGLHSLVAVPVIVSRLVRGVL 117

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG----LMLL 147
                    +  +  E        L +++       N   S      RI  G     +  
Sbjct: 118 YGGVHSSVRLGDKVLEEVTMTARCLEQDLAVVDACRNMDRSGNGKGGRIMNGAEWEQVRS 177

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEI 206
                 +L +R+ +  L    +    +       K   +L+ RE++ L  ++ G T+ E 
Sbjct: 178 THSKLRMLANRVDDEKLRQELEVLCDQMVTPVRVKQTTKLSARELDVLACVALGHTNVEA 237

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  +GI   TV +Y+ S+MRK    TR  A+  A R  
Sbjct: 238 AEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 275


>gi|326331785|ref|ZP_08198073.1| putative large transcriptional regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325950584|gb|EGD42636.1| putative large transcriptional regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 960

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             G   +L+ REVE +  ++ G T+ ++A  L IS  TV+ ++++ MRK    +R+
Sbjct: 887 RRGYGEQLSPREVEVIQLVARGMTNKQVADTLFISPRTVHRHVSTAMRKLDVSSRT 942


>gi|300788810|ref|YP_003769101.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
 gi|299798324|gb|ADJ48699.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
          Length = 983

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E+E +   +EG T+ EI   L +SR TV  ++A +  K     R+   + A   
Sbjct: 924 LTPTELEVVKLAAEGCTNPEIGTRLFMSRGTVKTHLAHVYAKLGIANRTELASIAAAR 981


>gi|291543163|emb|CBL16273.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus bromii L2-63]
          Length = 212

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D+   M  +  +    +  +  ++   +  ++PE        +    S  +        
Sbjct: 53  MDICTSMGANGLEAAERIKAKFPKIKIIIVTSMPEYSYLKRAKEAGVDSFWYK------- 105

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              + P+  I L DR      +        K  +       + T RE+E L  ++ G T+
Sbjct: 106 --EVSPEPIIELMDRTMNGERVFPDTTPKIKFGNAMS---TDFTERELEVLRELTSGDTN 160

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I+  TV NYI  ++ KT  K+R+     A    +V
Sbjct: 161 TEIAKRLYIAPGTVKNYIQYMLEKTGFKSRTELAVKAREAGLV 203


>gi|261210994|ref|ZP_05925284.1| DNA-binding response regulator LuxR family [Vibrio sp. RC341]
 gi|260839969|gb|EEX66569.1| DNA-binding response regulator LuxR family [Vibrio sp. RC341]
          Length = 212

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    Y
Sbjct: 145 ANKPNPLSRREEAILRLVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQY 204

Query: 240 AVRNNIV 246
           A+++ ++
Sbjct: 205 ALQHGLL 211


>gi|237725811|ref|ZP_04556292.1| transcriptional regulator [Bacteroides sp. D4]
 gi|265753165|ref|ZP_06088734.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
 gi|229435619|gb|EEO45696.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|263236351|gb|EEZ21846.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
          Length = 256

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           IG M + P  +   +    E  +L      MF    V       LTGRE+E L  I  G 
Sbjct: 154 IGNMSMAPGQKESEQ---VECTVLNLRNGEMFSPGVVIMNPVVSLTGREMEILRLIQRGF 210

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S EIA  L IS +TV+ +  +++RK        AI     + ++
Sbjct: 211 LSKEIADKLCISIHTVHIHRQNLLRKLGVHNSLEAIRLGQESGLL 255


>gi|228900420|ref|ZP_04064648.1| Response regulator [Bacillus thuringiensis IBL 4222]
 gi|228907528|ref|ZP_04071385.1| Response regulator [Bacillus thuringiensis IBL 200]
 gi|228969652|ref|ZP_04130440.1| Response regulator [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228790061|gb|EEM37855.1| Response regulator [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228852020|gb|EEM96817.1| Response regulator [Bacillus thuringiensis IBL 200]
 gi|228859218|gb|EEN03650.1| Response regulator [Bacillus thuringiensis IBL 4222]
          Length = 195

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 48  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 107

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I       +N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 108 MQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 161

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 162 SEGTIANYITSVLGKTGLEHRTQIAIY 188


>gi|294139532|ref|YP_003555510.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea
           DSS12]
 gi|224613098|dbj|BAH24209.1| regulator protein [Shewanella violacea]
 gi|293326001|dbj|BAJ00732.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea
           DSS12]
          Length = 209

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 35/59 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE++ L  +++GK++  ++  L IS  TV  ++ +++RK   K+R+      +++
Sbjct: 151 NLTPRELQILQLVAQGKSNRTLSEHLHISEGTVKVHVKNLLRKANAKSRTEMAVRYLKH 209


>gi|50119655|ref|YP_048822.1| virulence regulator [Pectobacterium atrosepticum SCRI1043]
 gi|49610181|emb|CAG73623.1| virulence regulator [Pectobacterium atrosepticum SCRI1043]
          Length = 116

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +L  R+ E L  I  G ++ +I+  L IS  TV +++ SI R+   + R+ A  
Sbjct: 55  KLRERQHEVLQLIVSGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 108


>gi|15901823|ref|NP_346427.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111656996|ref|ZP_01407802.1| hypothetical protein SpneT_02001776 [Streptococcus pneumoniae
           TIGR4]
 gi|148995258|ref|ZP_01824066.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|168490006|ref|ZP_02714205.1| DNA-binding response regulator [Streptococcus pneumoniae SP195]
 gi|5830548|emb|CAB54585.1| response regulator [Streptococcus pneumoniae]
 gi|14973509|gb|AAK76067.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|147926803|gb|EDK77860.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|183571627|gb|EDT92155.1| DNA-binding response regulator [Streptococcus pneumoniae SP195]
 gi|332072085|gb|EGI82572.1| response regulator [Streptococcus pneumoniae GA17570]
          Length = 199

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I++G ++ EIA  L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMMHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|323435982|ref|ZP_01049465.2| transcription regulator, LuxR/FixJ family [Dokdonia donghaensis
           MED134]
 gi|321496297|gb|EAQ39437.2| transcription regulator, LuxR/FixJ family [Dokdonia donghaensis
           MED134]
          Length = 537

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E+  +A  +    +           L+ RE E L  +S+G T+ +I   L IS  TV  +
Sbjct: 457 ELQNVANTKEQTLQESVDQISTSHNLSKRETEVLLELSKGFTNKQIGEALHISIATVKFH 516

Query: 221 IASIMRKTATKTRSGAI 237
            ++I  K     RS  I
Sbjct: 517 TSNIYAKLDVSNRSEVI 533


>gi|326772758|ref|ZP_08232042.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326637390|gb|EGE38292.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 241

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 13/179 (7%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT------ELFCPVFHTLPENITPPAG 125
           + +   V S     L+  + +   D      +          +      T  + +     
Sbjct: 45  RAVLRFVQSHQVDVLITDVHMEHMDGVEMTREVLRLSPSTRVILLTTVDTDEDLLQGLGA 104

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +   +     I   +  +    +++          L  Y     +  D        
Sbjct: 105 GASGFLLKSAPAEEIIAAVRTVHSGAKVVAPT---PTTRLIDYALASVRGAD----GSVH 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE + L  + EG ++ +IA +L I+  TV ++I  +  KT T +R   + +A ++ 
Sbjct: 158 LSQRERDVLHLLCEGASNRKIASLLAIAEATVKSHITGLFHKTGTVSRLEIVVWAFKHG 216


>gi|288926651|ref|ZP_06420565.1| transcriptional regulator [Prevotella buccae D17]
 gi|288336561|gb|EFC74933.1| transcriptional regulator [Prevotella buccae D17]
          Length = 213

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 19/177 (10%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN----R 129
            D++V  D+         +++ ++   + +R  +    +F            + +     
Sbjct: 45  DDAVVMLDY-----TLFDINDVEELLILGERFRQTRWLLFSEDLSLDFVRRLVASSRQFG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                  +  IR G+       R I R R+ E+ LLA  Q            +  +LT  
Sbjct: 100 ILLKESSLEEIREGIECAIRGERFICR-RMTEM-LLAPRQNE--------EEERVKLTKT 149

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+ G T+ EIA     S +TVN +  +I RK    T   A  YA+R  +V
Sbjct: 150 ETEVLKEIALGFTTREIAERRFSSFHTVNTHRKNIFRKLGVNTVHEATKYALRAGLV 206


>gi|269929119|ref|YP_003321440.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788476|gb|ACZ40618.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 209

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-- 163
            E    +     E+  PP  +      L  +  R  +  +LL       +   L   G  
Sbjct: 60  EEWLDDLARLAGESGAPPVLLLVDTPELAPEALRAGVAGLLLRDADPDEIVAALRAAGQG 119

Query: 164 --LLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             +L         +             LT RE E L  I++G  +  IA+ LGIS +TV 
Sbjct: 120 LTVLDPRAVPFLTTDAAPRASPDAGEPLTPREREILQLIAQGLPNKSIALELGISEHTVK 179

Query: 219 NYIASIMRKTATKT 232
            ++ SI+ K    +
Sbjct: 180 FHVGSILDKLGASS 193


>gi|227823159|ref|YP_002827131.1| putative two component transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227342160|gb|ACP26378.1| putative two component transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 213

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA-YA 240
           +LT RE E L  ++ G ++ +IA   GIS NTV  ++ ++  K   + R+ A+A YA
Sbjct: 149 QLTARETELLGMLANGWSNTQIASRTGISENTVKYHLKNLYDKLEVRNRAMAVAIYA 205


>gi|188026100|ref|ZP_02960869.2| hypothetical protein PROSTU_02845 [Providencia stuartii ATCC 25827]
 gi|188021614|gb|EDU59654.1| hypothetical protein PROSTU_02845 [Providencia stuartii ATCC 25827]
          Length = 225

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L  ++ G  + EI+ +L IS  TV  +I ++++K   ++R  A    +R
Sbjct: 167 LTRRECEILHEMAAGLKNREISQLLFISEETVKVHIRNLLKKLNVRSRLEASLIYMR 223


>gi|127511776|ref|YP_001092973.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126637071|gb|ABO22714.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 209

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 16/137 (11%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           N     G+ +R   LT   A+  +  ++       +L+D   ++ L     A        
Sbjct: 70  NALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKLKNAMQGHRVIS 129

Query: 179 HWGKDF---------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              +DF                LT RE++ L  ++EGK++  I+  L IS  TV  ++ +
Sbjct: 130 ESVEDFIYELKDGADEQAWIDNLTPRELQILEQLAEGKSNRVISEQLHISEGTVKVHVKN 189

Query: 224 IMRKTATKTRSG-AIAY 239
           ++RK   K+R+  A+ Y
Sbjct: 190 LLRKANAKSRTEMAVRY 206


>gi|89073186|ref|ZP_01159725.1| putative nitrate/nitrite response regulator protein [Photobacterium
           sp. SKA34]
 gi|89051139|gb|EAR56596.1| putative nitrate/nitrite response regulator protein [Photobacterium
           sp. SKA34]
          Length = 208

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 40/84 (47%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L+  L      +       +S +       +LT RE + L  +++G+ + +IA  L IS 
Sbjct: 117 LKSALCGGKAYSDIVKESLESPNTPTNILSQLTERETQILQEVAKGQRNRQIAEQLFISE 176

Query: 215 NTVNNYIASIMRKTATKTRSGAIA 238
            TV  ++ S+++K   K+R+ A  
Sbjct: 177 ATVKVHMKSLLKKLQVKSRTAATI 200


>gi|47565520|ref|ZP_00236561.1| two-component response regulator [Bacillus cereus G9241]
 gi|206974929|ref|ZP_03235844.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|217959320|ref|YP_002337868.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|222095459|ref|YP_002529519.1| DNA-binding response regulator, luxr family [Bacillus cereus Q1]
 gi|229138533|ref|ZP_04267120.1| Response regulator [Bacillus cereus BDRD-ST26]
 gi|229196045|ref|ZP_04322797.1| Response regulator [Bacillus cereus m1293]
 gi|47557510|gb|EAL15837.1| two-component response regulator [Bacillus cereus G9241]
 gi|206746948|gb|EDZ58340.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|217063687|gb|ACJ77937.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|221239517|gb|ACM12227.1| DNA-binding response regulator, LuxR family [Bacillus cereus Q1]
 gi|228587427|gb|EEK45493.1| Response regulator [Bacillus cereus m1293]
 gi|228644941|gb|EEL01186.1| Response regulator [Bacillus cereus BDRD-ST26]
          Length = 212

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I       +N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|108803548|ref|YP_643485.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764791|gb|ABG03673.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 220

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  ++ G ++ ++A  L ++  TV  ++A++  K    +R  A+  A+   
Sbjct: 151 ELSERELEILLLVARGLSNRQVASELHLAEATVKRHLANVYAKLNVGSRGEAVRKALSKG 210


>gi|330808400|ref|YP_004352862.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376508|gb|AEA67858.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 219

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 5/176 (2%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+    IV  D        +   ++ K      +   +     HT P  I          
Sbjct: 45  ERLNPDIVLLDISMKDTCGLDALQQLKRARPHSK---VLILSMHTDPALIMQALESGAHG 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L    A      +         L   +     +        + +     +   LT R+
Sbjct: 102 YLLKDTTANELKHALEALRNNERYLSPAIAHT--VINQALTRVQKHQSDPARAHNLTARQ 159

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  I  GK++ EIA  L +S  TV  + A IM++      +G + +AVR  I+
Sbjct: 160 LEILRLIVRGKSTREIANGLNLSIKTVETHRAQIMKRLQIHDVAGLVLFAVREQII 215


>gi|317476127|ref|ZP_07935379.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907765|gb|EFV29467.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 255

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE+E L  + +G  S EIA  L IS NTVN++  +I++K      + AI +A R
Sbjct: 189 NEPLTNRELEVLRLMKQGLLSKEIADTLQISINTVNSHRQNILQKLKANNSAEAINFAQR 248


>gi|300723547|ref|YP_003712852.1| response regulator in two-component regulatory system with NarQ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630069|emb|CBJ90706.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus nematophila ATCC 19061]
          Length = 211

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 41/82 (50%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            + +        +  ++     +LT RE++ L  ISEG T+ EIA  L IS  TV  +  
Sbjct: 125 AVFSEKVHQYLSTRHLYIDPLSKLTKRELDVLKEISEGMTNKEIADFLFISEETVKVHTR 184

Query: 223 SIMRKTATKTRSGAIAYAVRNN 244
           ++++K  +++R  A    +++ 
Sbjct: 185 NLLKKLKSRSRLEATIIYLKHR 206


>gi|291518206|emb|CBK73427.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Butyrivibrio fibrisolvens 16/4]
          Length = 210

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +++ +E E +  ++EG ++ EIA  L +S  TV NY+++I+ K   + R+    + ++N
Sbjct: 152 DISEKEYEVIQLVAEGFSNKEIAQKLFLSEGTVRNYLSTILEKLELRDRTQLAIFYLKN 210


>gi|148242300|ref|YP_001227457.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147850610|emb|CAK28104.1| Possible two-component system response regulator [Synechococcus sp.
           RCC307]
          Length = 228

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 40/99 (40%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           F   +  L   +  +     Y++   +S  + +     LT RE E L  ++ G +  EIA
Sbjct: 128 FVDDQKPLEAAIIAVMGNHGYRSVSLRSGQLPYLSCPRLTPREYEVLDLLASGLSDREIA 187

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  T   Y   ++R      R  A+   +R  +V
Sbjct: 188 EKLIVSEETSRTYTKRLLRTLEVNNRVQAVLKGMRCGMV 226


>gi|271965986|ref|YP_003340182.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509161|gb|ACZ87439.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 223

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D+    L   +  +  G  LL P     L +R           A+
Sbjct: 89  VFAGLRAGASGFLLKDSPPEDLLTAIRVVAAGEALLTPAATRRLIERFTATP---PSPAD 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE + L  ++ G ++ EIA  L ++ +T+  ++ +++ KT  +
Sbjct: 146 RLPESTPSRKILATLTDRERDVLARVARGMSNAEIAADLVLATSTIKTHLTNLLAKTEAR 205

Query: 232 TRSGAIAYAVRNNI 245
            R+  + +A  + +
Sbjct: 206 DRAQLVIFAYESGL 219


>gi|83745622|ref|ZP_00942680.1| Hypothetical Protein RRSL_04683 [Ralstonia solanacearum UW551]
 gi|83727699|gb|EAP74819.1| Hypothetical Protein RRSL_04683 [Ralstonia solanacearum UW551]
          Length = 89

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +   + W     LT R+ + L   + GK++ EIA  L IS  TV  ++  I+ +   + R
Sbjct: 12  RPIPMAWPHHPMLTTRQQDILRETAYGKSNAEIAQALNISVETVKTHVRQILMRLEARNR 71

Query: 234 SGAIAY 239
           +   A 
Sbjct: 72  TQLAAM 77


>gi|333024715|ref|ZP_08452779.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744567|gb|EGJ75008.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 203

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
              P    L   +    G D    +    +      +   F   +++   R    G  A 
Sbjct: 59  TVLPRLARLAPVLVITYGRDAELHARARRLGAAGCLVHGDFTVPQLVGAVRHLRAGAPA- 117

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                 K   V       L+ RE E +  I+ G  + +IA    I+  TV N+I  I  K
Sbjct: 118 LPPPSQKQSPVRPSWGGPLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAK 177

Query: 228 TATKTRSGAIAY 239
             T TRS AIA 
Sbjct: 178 LQTTTRSEAIAR 189


>gi|328885153|emb|CCA58392.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 218

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D   +  G+  +   G  +       +  +       F        +   LTG
Sbjct: 100 GFLLKSGDPRELIAGVRAVAGGGAALSPTVARRV--IDTLGGERFTRAARARTRLEPLTG 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E +  ++ G ++ EIA  + +   TV  ++++++ +   + R      A    +V
Sbjct: 158 REREVVALLAAGLSNQEIADRMYVVEGTVKAHVSAVLARLGLRNRVQLAVLAYEAGLV 215


>gi|300741965|ref|ZP_07071986.1| two-component system response regulator TcsR2 [Rothia dentocariosa
           M567]
 gi|300381150|gb|EFJ77712.1| two-component system response regulator TcsR2 [Rothia dentocariosa
           M567]
          Length = 210

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 28/62 (45%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L     G T+  I   L +S  TV N+++S M K     R  AI  A  
Sbjct: 147 ESPLTERETEILRVAGHGATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAAD 206

Query: 243 NN 244
           N 
Sbjct: 207 NG 208


>gi|290955461|ref|YP_003486643.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644987|emb|CBG68073.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  ++ G+++  IA  L ++  T+  ++  + RK  T+ R+  ++ AVR  +
Sbjct: 158 LSEREIEVVRLLALGRSNRAIAAALHLTEATIKTHLVRVYRKLGTENRASTVSEAVRRGL 217

Query: 246 V 246
           +
Sbjct: 218 L 218


>gi|29347818|ref|NP_811321.1| LuxR family transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298387982|ref|ZP_06997530.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 1_1_14]
 gi|29339719|gb|AAO77515.1| luxR family transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298259248|gb|EFI02124.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 1_1_14]
          Length = 200

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y         +       L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  
Sbjct: 116 GYPVKDMPPIAMPEVHQEILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITE 175

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ SG   YAV N  +
Sbjct: 176 KLGIKSVSGLTIYAVMNGYI 195


>gi|188995237|ref|YP_001929489.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC
           33277]
 gi|188594917|dbj|BAG33892.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC
           33277]
          Length = 199

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 44/104 (42%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
             ML      + +   + E+  L           +    +   LT RE E +  + +G T
Sbjct: 89  SNMLHNYDDTLSVHATVEELRQLLERLYQKTLEPEESGEEQQTLTNREKEIVVGVVKGMT 148

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S +TV  +  +I +K    + SG   YA+ N +V
Sbjct: 149 NKEIAEELFLSTHTVITHRRNIAKKLQIHSPSGLTIYAIMNKLV 192


>gi|124004721|ref|ZP_01689565.1| transcriptional regulatory protein DegU [Microscilla marina ATCC
           23134]
 gi|123989844|gb|EAY29373.1| transcriptional regulatory protein DegU [Microscilla marina ATCC
           23134]
          Length = 223

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L+  +     S       D  +T RE E L  I +  T+ EIA  L +S  TV  +  +
Sbjct: 137 MLSGLKRKRQISSKPKVDDDVHMTPREREVLALILKEYTTQEIADQLFVSIRTVETHRKN 196

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           ++ K   K   G +  A++  
Sbjct: 197 LLTKFGVKNVVGLVVKALQMG 217


>gi|254976785|ref|ZP_05273257.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-66c26]
 gi|255094171|ref|ZP_05323649.1| salavaricin two-component response regulator [Clostridium difficile
           CIP 107932]
 gi|255315923|ref|ZP_05357506.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-76w55]
 gi|255518582|ref|ZP_05386258.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-97b34]
 gi|255651702|ref|ZP_05398604.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-37x79]
 gi|306521501|ref|ZP_07407848.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-32g58]
          Length = 200

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + I  D L +  LL  YQ       +       +LT  E   L  I  GK    IA  L
Sbjct: 102 NKNISPDSLID-SLLKVYQGVTCFPSENTEVIIEDLTNMEKRILQLICSGKKRKIIADEL 160

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  T++N++  I  K    +   AI  A++   +
Sbjct: 161 YISERTLSNHLQHIYDKLDVSSSVEAITKAIKMGYI 196


>gi|253572201|ref|ZP_04849605.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|251838381|gb|EES66468.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 200

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y         +       L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  
Sbjct: 116 GYPVKDMPPIAMPEVHQEILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITE 175

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ SG   YAV N  +
Sbjct: 176 KLGIKSVSGLTIYAVMNGYI 195


>gi|76797806|ref|ZP_00780071.1| response regulator [Streptococcus agalactiae 18RS21]
 gi|76586820|gb|EAO63313.1| response regulator [Streptococcus agalactiae 18RS21]
          Length = 186

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A
Sbjct: 125 PLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 180


>gi|332527223|ref|ZP_08403293.1| ATP-dependent transcriptional regulator-like protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332111645|gb|EGJ11626.1| ATP-dependent transcriptional regulator-like protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 868

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA-YAVRNN 244
           + RE E L  I+ G ++  IA  L +S +TV  ++A+I+ K    +R  A A YAV+  
Sbjct: 810 SAREWEVLERIAAGDSNKLIARALDLSPHTVKRHVANILDKLGAASRGQAAAWYAVQRG 868


>gi|255008092|ref|ZP_05280218.1| putative transcriptional regulatory protein [Bacteroides fragilis
           3_1_12]
 gi|313145809|ref|ZP_07808002.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313134576|gb|EFR51936.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 225

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        AI YA+
Sbjct: 154 EDRLLTPTEKIILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEAIKYAM 213

Query: 242 RNNIV 246
           R  IV
Sbjct: 214 RAGIV 218


>gi|157375894|ref|YP_001474494.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
 gi|157318268|gb|ABV37366.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
          Length = 211

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 8/170 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E +L    SS   FDL   + +    +    ++R       VF   P+ +     ++   
Sbjct: 41  ECQLRETQSSLVIFDLAS-VDVQVAYQLQRHIEREHAGLKVVFIHFPKQVDIKFLIN--- 96

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S+T  V    + L ++  +   ILR R +    L+   ++   +++        LT RE
Sbjct: 97  PSVTAGVFYNDLSLEVIGKELNNILRGRSYIPAELSVGSSDEEFNHEESES----LTIRE 152

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            E L  +  G T+ +IA  L +S +T+  ++    RK    +R  AIA+A
Sbjct: 153 REVLQALLSGSTNVDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 202


>gi|149374681|ref|ZP_01892455.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
 gi|149361384|gb|EDM49834.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
          Length = 221

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 5/174 (2%)

Query: 72  QKLDSIVSSDWPFDLVR-CMALSEKDKYYNVL-QRPTELFCPVFHTLPENITPPAGMDNR 129
           + L + V S    DLV   + +     +  ++  R      PV                 
Sbjct: 38  KALQAAVESHPDADLVLLDLNMPGAHGFSGLVFMRGQYPGLPVVVVSGSEEMQVMRRSID 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +  F        L  +    + +L   +W    +A     M         K   LT +
Sbjct: 98  YGASGFIPKSAP--LPTITEAIQAVLEGDVWLPEGVADKIERMHSDMTDFSEKLASLTPQ 155

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +   L  ++EG  + +IA  L +S  T+  +I ++ RK   + R+ A+  A++ 
Sbjct: 156 QFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFRKLGVRNRTQAVI-AIQQ 208


>gi|83952296|ref|ZP_00961028.1| putative nitrate/nitrite response regulator protein [Roseovarius
           nubinhibens ISM]
 gi|83837302|gb|EAP76599.1| putative nitrate/nitrite response regulator protein [Roseovarius
           nubinhibens ISM]
          Length = 232

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
            G    Y  +  ++ R    L LL      + R+ + +     A +       D  + + 
Sbjct: 111 LGAQLGYLPMNLEIDRWVSVLRLLLCGESYMPRELIEQAA--PAPEPAKPAMPDRLFDR- 167

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             LT RE E L+  ++G  +  IA  LG+S +TV  ++  ++ K     R+ A  
Sbjct: 168 --LTDREFEVLSCAAQGNQNKIIADKLGLSVHTVKLHMHHVIAKLGVHNRTEATI 220


>gi|320530995|ref|ZP_08032027.1| putative response regulator UvrY [Selenomonas artemidis F0399]
 gi|320136744|gb|EFW28694.1| putative response regulator UvrY [Selenomonas artemidis F0399]
          Length = 217

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 5/122 (4%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T     +   L  L    R +  +   +  LLAA      +  D       
Sbjct: 96  SGAMGYLPKTSADDELFDALHALAEGRRYLSPNA--QQSLLAAM---FSRPGDAEEDPRA 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    +  G T  E A  L +S  TV+ +   I  K     RS  +A A+R+ 
Sbjct: 151 RLTEREKEVFDRLIRGYTVTETAEQLHLSGKTVDTHKTHIYEKLGCSRRSDLVALAIRHG 210

Query: 245 IV 246
           ++
Sbjct: 211 LL 212


>gi|307324110|ref|ZP_07603319.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890559|gb|EFN21536.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 2/137 (1%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG--RIILRDRLWEIGLLAAYQ 169
           V+  L          D     LT  V     G  L+ P    R++            +  
Sbjct: 96  VYRALRNGACGFLLKDGAPGLLTEAVRAAASGNSLISPSVTVRLLAHMGPHRDRSAPSDA 155

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             + +           LT RE E +  ++ G+T++E+AV L ++ +TV  ++ ++ RK A
Sbjct: 156 RPVSRRRGRPEDLIEPLTQREREVVRRVARGRTNEEVAVDLHVTLSTVKTHLGNVQRKLA 215

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R    A+A  + +V
Sbjct: 216 ARNRVEIAAWAWEHGMV 232


>gi|320008532|gb|ADW03382.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 221

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 5/167 (2%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           P  ++  + +   D        V +R  ++       L E +            L    A
Sbjct: 52  PDLVLMDVQMPRLDGVSATRQIVAERLADVLVLTTFDLDEYVFGALRAGASGFLLKNTEA 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
              I  +    +G  ++   +    L+  + +               LT RE E L  + 
Sbjct: 112 GDLIAAVRTVARGEGLIAPAVTRR-LIEEFASASPAHEPAAPEALGTLTRREREVLGCLG 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G ++ EIA  L ++  TV  +++ ++ K   ++R+ A   A +  +
Sbjct: 171 LGLSNMEIAGRLSMAEATVKTHVSRLLGKLGLRSRAQAAVLAQQLGV 217


>gi|291301186|ref|YP_003512464.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570406|gb|ADD43371.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 3/145 (2%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                L  P ++       L E +    A     +     D   I   + ++     ++ 
Sbjct: 67  ARLRALPEPAQVIALTTFDLDEYVYDMIAAGAAGFLLKDTDPGEIIRAIRVVAAGDAMLH 126

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                   L+  Y             +   LT RE + L  ++ G T+ EIA  L +  +
Sbjct: 127 PAAARR--LIERYHRAARPRATAVRHRVDRLTPRETDVLRHLALGATNAEIAASLSMRES 184

Query: 216 TVNNYIASIMRKTATKTRSGAIAYA 240
           TV  ++  I+       R  A   A
Sbjct: 185 TVKAHVTRILATLDVTNRVQAALCA 209


>gi|288574077|ref|ZP_06392434.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569818|gb|EFC91375.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 832

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTG 188
             L F      +G  L          +R      +  Y     +      G++    LT 
Sbjct: 718 LILPFAENADVLGSSLDVVMEERWSSERNRFSSFVKRYSLGKERVLQSLSGREAVEGLTF 777

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           RE +    +SEG ++ EIA  L +S NTV  Y+ SI +K    +R
Sbjct: 778 RENDVALLVSEGLSNREIAKRLFLSENTVKFYLKSIFQKLGISSR 822


>gi|196230226|ref|ZP_03129089.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225823|gb|EDY20330.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 211

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 31/75 (41%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A      F        +   L+ RE E L  ++ G    EIA  L I   TV  ++ +I
Sbjct: 130 IARQVVQHFHEEGRLARESHHLSPREAEVLELLAAGYIYKEIADRLQIGLETVRTHVKNI 189

Query: 225 MRKTATKTRSGAIAY 239
             K   ++R  A+A 
Sbjct: 190 CAKMHVRSRVEAVAR 204


>gi|134101945|ref|YP_001107606.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|134101947|ref|YP_001107608.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914568|emb|CAM04681.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914570|emb|CAM04683.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 150

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +++G  + EIA  L  S  TV N +  +  +   + R  A+AYA+R  +
Sbjct: 90  LTTREIDVLRLMADGLDTAEIAQKLCYSERTVKNVVYGVTSRLNLRNRPHAVAYAMRAGV 149

Query: 246 V 246
           +
Sbjct: 150 I 150


>gi|119026058|ref|YP_909903.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765642|dbj|BAF39821.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 234

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 33/72 (45%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A Q +          +   LT RE++ L  ++EG  + EIA  L +S  TV N I+ I+ 
Sbjct: 157 AVQGSRNPDSSGPSERFAGLTERELDVLELVAEGLDNREIASRLFLSEGTVRNRISDILA 216

Query: 227 KTATKTRSGAIA 238
           KT    R+    
Sbjct: 217 KTNISNRTKLAV 228


>gi|302341508|ref|YP_003806037.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301638121|gb|ADK83443.1| two component transcriptional regulator, LuxR family [Desulfarculus
           baarsii DSM 2075]
          Length = 225

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L  + EG  + EIA  L +S+ TV N+ A+IMRK       G + YA+ 
Sbjct: 155 QERLTDRERQLLRLVVEGLPNREIADKLCLSQKTVENHRANIMRKLGRHDVIGLVKYAIA 214

Query: 243 NNIV 246
             +V
Sbjct: 215 TGLV 218


>gi|240170794|ref|ZP_04749453.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           kansasii ATCC 12478]
          Length = 214

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  +
Sbjct: 153 LSAREREVLNRIARGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGL 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|89094462|ref|ZP_01167402.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89081354|gb|EAR60586.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 221

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +   +  +  I   ++ +      + ++       +A     + +         
Sbjct: 99  DYGASGFIPKSAPLETIGEAIVAVLEGEEWLPQE-------VADNLGEVSEDDQKFAAAL 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT ++   LT ++EG  + +IA  L +S  T+  ++ +I+RK    +R+ A+  A R 
Sbjct: 152 AALTPQQFRVLTMLTEGLLNKQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQRL 211

Query: 244 NI 245
            +
Sbjct: 212 GV 213


>gi|284009118|emb|CBA76121.1| conserved hypothetical protein [Arsenophonus nasoniae]
          Length = 205

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE E L W+S G+T  +IA +LGI + T+  ++ ++++K    +   AI  A 
Sbjct: 137 KPSGLSSRENEILYWVSIGRTYQDIAKMLGIKQGTIKFHMGNVVKKLGVSSTKHAIKLAT 196

Query: 242 RNNIV 246
              ++
Sbjct: 197 ELKMI 201


>gi|317128012|ref|YP_004094294.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472960|gb|ADU29563.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 203

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 14/176 (7%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                F +++L  +V  D    ++  +  +   +    L +   +    F          
Sbjct: 36  AEAVAFCQKELLDVVLMDIQMPIMDGIQATR--QIKLDLPKVRIMMLTTFKDEKNIRMAI 93

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y   +  V  +   +  L     ++  D L E+            S +      
Sbjct: 94  LAGAEGYLIKSTSVTSMAQQIRALMSGSTVLDADVLKEL---------TEPSNNEELD-- 142

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +LT RE +    +++G ++ EIA  L I   TV N ++ I+ K   + R+    Y
Sbjct: 143 -QLTPREKDIAELVAQGLSNREIAEQLYIGEGTVRNNLSIILEKLDLRDRTQLAIY 197


>gi|229155415|ref|ZP_04283525.1| Response regulator [Bacillus cereus ATCC 4342]
 gi|228628130|gb|EEK84847.1| Response regulator [Bacillus cereus ATCC 4342]
          Length = 212

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I       +N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------SNLMESREEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|158335395|ref|YP_001516567.1| hypothetical protein AM1_2240 [Acaryochloris marina MBIC11017]
 gi|158305636|gb|ABW27253.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 469

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E +  +S+G    +IA  L IS +TV  ++ + + K   K R  A+  A   
Sbjct: 409 LSDREQEIMRLLSQGLRDRDIANRLHISESTVRFHVNNTLTKLKAKNRYQAVYEATSR 466


>gi|302540485|ref|ZP_07292827.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302458103|gb|EFL21196.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 215

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 5/164 (3%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           RC  +   D        P EL   +   LP  +       +    L   +     G +L 
Sbjct: 45  RCPEMILLDVRIPGAMPPEELCRELRELLPNAVIVIFSACSDASVLHSCLVAGANGCLLK 104

Query: 148 FPKGRII---LRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKT 202
                 +   LR  L    +L    A            G    LT RE E LT ++ G +
Sbjct: 105 DASELDVGAALRALLAGQFVLDPRVAKQLAPEIIKPRTGGTVRLTDREQEVLTLLAHGCS 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L +S  TV  Y+  +++K    +R  A+       +V
Sbjct: 165 NRKIAQQLCLSETTVKGYVTDLLQKLDASSRLEAVVRGCELGLV 208


>gi|296139583|ref|YP_003646826.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027717|gb|ADG78487.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 213

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 1/163 (0%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  ++  + +   D          E    V      ++           +  F + +   
Sbjct: 49  PDVVIMDVRMPRVDGIAATAHVVAETDAAVLVLTTFDLDDYVLGALAAGASGF-LLKSAG 107

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G  L+     +   D + +  +  A   ++             LTGRE + L  +  G +
Sbjct: 108 GDELIRGVQAVAAGDAVLDPKVTRAVITSLPAPPTAVHPDLSSLTGRERDVLAGLGAGLS 167

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +IA  L I   TV  +++ ++ K   ++R  A   A ++ +
Sbjct: 168 NYQIARRLEIGEATVKTHVSRVLMKLGVQSRVQAAVIAAQSGL 210


>gi|218129118|ref|ZP_03457922.1| hypothetical protein BACEGG_00692 [Bacteroides eggerthii DSM 20697]
 gi|217988753|gb|EEC55072.1| hypothetical protein BACEGG_00692 [Bacteroides eggerthii DSM 20697]
          Length = 192

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L+ RE+E L  I++G  + EIA  L IS  TV  +  +I+ K   K+ SG   YAV 
Sbjct: 124 NHDLSAREIEVLALITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVM 183

Query: 243 NNIV 246
           +  V
Sbjct: 184 HGYV 187


>gi|167837198|ref|ZP_02464081.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           thailandensis MSMB43]
          Length = 90

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + +  ++ G ++ EIA    ++ +TV  ++ +I++K    +R     YAV   
Sbjct: 22  QLTPREHDIVRALARGTSNKEIAREFDVAESTVKIHVQNILKKLNLTSRVQIAVYAVERG 81

Query: 245 I 245
           +
Sbjct: 82  L 82


>gi|146297938|ref|YP_001192529.1| response regulator receiver protein [Flavobacterium johnsoniae
           UW101]
 gi|146152356|gb|ABQ03210.1| response regulator receiver protein [Flavobacterium johnsoniae
           UW101]
          Length = 256

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L   ++G  S +IA  L IS  TV  +  +I++K      + A+  A+   +
Sbjct: 194 LSKRELEILKLAAKGNNSGQIAGFLNISVYTVRRHRQNIIQKMQVSNTTEALRTALVMGL 253

Query: 246 V 246
           +
Sbjct: 254 I 254


>gi|158422196|ref|YP_001523488.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158329085|dbj|BAF86570.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 223

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D    +   LT ++V  L  ++EG+ + +IA  LG+S  TV  ++++I++K   ++R+
Sbjct: 145 EADAIISRLATLTPQQVRVLMMLAEGRLNKQIAYELGVSEATVKAHVSAILQKLGVESRT 204

Query: 235 GAIA 238
            A+ 
Sbjct: 205 QAVI 208


>gi|86740943|ref|YP_481343.1| ATP-dependent transcription regulator LuxR [Frankia sp. CcI3]
 gi|86567805|gb|ABD11614.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Frankia sp. CcI3]
          Length = 914

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 96/276 (34%), Gaps = 33/276 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFV-SHLPTRSDLLARMIPLDCT--VSWTMRMYALTEYVGASH 60
           EI+ V  +L+   E  +  V   L    D     + L           +   ++ V    
Sbjct: 638 EIEDVWHLLDEGSEAASQLVLPRLSAAVDHERLRLHLARGDLGRAQNVLARQSDDVARGG 697

Query: 61  FLLVRWD-LFQEQKLDSIVSSDWPFD----LVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
             +      +Q      ++++   +D    L+  M        +   +  T +   V H+
Sbjct: 698 DGIAMATRHYQLAMRARVMAAQADYDGALRLLSQMHQESSSVAWRYAETATRIDLAVVHS 757

Query: 116 LPENIT------PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------- 162
           L  +         PA +    C L   V      L+ +  + R   R R W +       
Sbjct: 758 LTGDTDTALRTLVPAVVAGARCGLVRTVTDAGPELLKIIGELRDASRCRRWPVELPTVPS 817

Query: 163 ----GLLAAYQANMFK--------SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                LLA   A+  +          + +   +  L  RE++ L  +  G ++ EIA  L
Sbjct: 818 DYLSKLLATAHADAERAAIPIIDRPAERNPAPEEPLNAREIDILRLLDRGLSNKEIARNL 877

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G++ NTV  Y+ SI  K     R  +++ A R  I+
Sbjct: 878 GLTINTVKWYLKSIYTKLGVARRGESVSEARRRRIL 913


>gi|254819179|ref|ZP_05224180.1| LuxR family transcriptional regulator [Mycobacterium intracellulare
           ATCC 13950]
          Length = 402

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E + +  ++EG  + +I   L IS  TV  ++  +  K    +R      A R ++
Sbjct: 341 LTPTERDVVRLVAEGLGNKDIGERLFISPRTVQTHLTHVYAKLGLTSRMQLAQEAARRSV 400

Query: 246 V 246
           +
Sbjct: 401 L 401


>gi|228958121|ref|ZP_04119856.1| Response regulator [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228801638|gb|EEM48520.1| Response regulator [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 212

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I       +N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|227506399|ref|ZP_03936448.1| regulatory family protein [Corynebacterium striatum ATCC 6940]
 gi|227197050|gb|EEI77098.1| regulatory family protein [Corynebacterium striatum ATCC 6940]
          Length = 293

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 6/147 (4%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
             +  R  E    V   +       +G    +     +  ++R     L      +  + 
Sbjct: 149 VTMTARCLEQDLAVNSAMRRADGGKSGAARGHVMNGAEWEQVRSTHSKLRMLANRVEDED 208

Query: 159 LW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           L  E+  L     +      V   +  +L+ RE++ L+ ++ G T+ E A  +GI   TV
Sbjct: 209 LRKELEALCDQMVS-----PVRVKQSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETV 263

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNN 244
            +Y+ S+MRK    TR  A+  A R  
Sbjct: 264 KSYLRSVMRKLGAHTRYEAVNAARRIG 290


>gi|256377765|ref|YP_003101425.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922068|gb|ACU37579.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 8/187 (4%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITP 122
            +    +    +     P   +  + +   D      +       +   V  T  ++   
Sbjct: 31  AEADDGRAAVRLALEHRPDVALLDIRMPRLDGLAAAEELARSAPGVAVAVLTTFGDDAYV 90

Query: 123 PAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
              +D     +   + D   +  G+  +   G  +         +LAA            
Sbjct: 91  ARALDGGAKGFLLKSGDPRELLAGVHAVAGGGAYLAP--RVAARVLAALDTRPLGRAAEA 148

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   LT RE + L  +  G ++  IA  L +   TV  ++++I+ +     R  A   
Sbjct: 149 RARADVLTPRERDVLALVGAGLSNARIARRLNLVEGTVKGHVSTILTRLDLANRVQAAVL 208

Query: 240 AVRNNIV 246
           A    +V
Sbjct: 209 AHDAGLV 215


>gi|254475262|ref|ZP_05088648.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
 gi|214029505|gb|EEB70340.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
          Length = 240

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE      ++ G T+  IA  LG+S  TV  +I SI RK     R+  +A A + N
Sbjct: 151 LSPREQSIGELLALGLTNKVIAFELGLSEPTVKMHIRSIFRKLGAANRTQ-VAAAFQEN 208


>gi|42780933|ref|NP_978180.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC
           10987]
 gi|42736854|gb|AAS40788.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC
           10987]
          Length = 218

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 71  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 130

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I       +N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 131 MQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 184

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 185 SEGTIANYITSVLGKTGLEHRTQIAIY 211


>gi|291303233|ref|YP_003514511.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572453|gb|ADD45418.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 214

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 17/221 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            D   R++ +D        +  L E        +       ++ L  + ++     LV  
Sbjct: 2   DDTPVRVLIVDDQTLMRQGLRKLLEI--EPGVTVSGAAASGQEALALLATTTVDVALV-D 58

Query: 90  MALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   D    + +   E      +    F          A     +         +   
Sbjct: 59  AKMPGMDGVALIRRLAAEHPSVACVILTTFDDDEYIFGGLAAGARGFLLKDTPPDELVTT 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L        ++        G  AA +       D H      L+ RE E    I++G  +
Sbjct: 119 LRRAAAGETVL--------GSPAAERVVARLRTDPHGTGLEALSAREREVGDLIAQGAHN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L I+  TV N++ +++RK   + R+    +  ++ 
Sbjct: 171 REIARRLFITEGTVKNHVTALLRKLGMRDRTQLALFLAKHR 211


>gi|46580981|ref|YP_011789.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450401|gb|AAS97049.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311234669|gb|ADP87523.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris RCH1]
          Length = 216

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 9/175 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTEL---FCPVFHTLPENITPPAGMDNRY 130
            IV    P  ++  + L   +       ++R  E         H     I          
Sbjct: 42  RIVEKHAPDIVLMDLTLPVMEGAEAIREIKRRRETTKVLALTAHKKDSLIYKTLSAGADG 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L      I    M     GR  +   + +  LL        +  +        L+ RE
Sbjct: 102 YLLKNASRDILFQAMQTVLAGRRYISPEISD--LLIDDFLRHGRRDEASMLD--LLSDRE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  ++EG  +  +A  L IS  TV  + A++ RK  T + +  + +A+ + +
Sbjct: 158 KQVLKLVAEGHGNKAVAEKLCISHKTVEKHKANLKRKLGTASTAELVTFAIEHGL 212


>gi|152965549|ref|YP_001361333.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360066|gb|ABS03069.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 200

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +++G+++ +    LG+S  TV +++A I RK  T  R+  +A  +R  +
Sbjct: 139 LSEREIEVLQHVADGRSNKDTGAALGLSALTVKSHLARIARKLGTGDRAEMVAITLRAGV 198

Query: 246 V 246
           +
Sbjct: 199 I 199


>gi|84393114|ref|ZP_00991879.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|84376271|gb|EAP93154.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
          Length = 212

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE   L  +++G++S EIA  L IS  TV  +  +I  K    + +    YAV + 
Sbjct: 150 PLSRREEAVLKLVAKGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVNSG 209

Query: 245 IV 246
           +V
Sbjct: 210 LV 211


>gi|324325861|gb|ADY21121.1| LuxR family DNA-binding response regulator [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 212

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I       +N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|226363981|ref|YP_002781763.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242470|dbj|BAH52818.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 322

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 70/211 (33%), Gaps = 11/211 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+IP+    +    M +L    G         +    +     V S  P +L   +  + 
Sbjct: 111 RIIPVAALSTAPGTMPSLPSEFGLPD---GSPEADALETNTVTVGSHVPAELRELLGANG 167

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGM-----DNRYCSLTFDVARIRIGLMLLFP 149
                 V+         V   L  +     G+        +  +  +  R R   +L   
Sbjct: 168 FTTVPVVVDGTAAALLHVGAVLDGSRRHALGVFAEVLGGHFERVGLESRRERQNALLRES 227

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208
             R    D     G L    A      D    +  E LT RE + +  I  G ++  IA 
Sbjct: 228 ARRWTGDDAPPSHGAL--DLAPSQADRDAAEQRLLEPLTEREADVVRLILTGASNSAIAA 285

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L I+ +TV +++  I+RK     R+  IA 
Sbjct: 286 ELVITVDTVKSHVKRILRKLGATNRAELIAK 316


>gi|209883854|ref|YP_002287710.1| two component transcriptional regulator, LuxR family [Oligotropha
           carboxidovorans OM5]
 gi|209872050|gb|ACI91846.1| two component transcriptional regulator, LuxR family [Oligotropha
           carboxidovorans OM5]
          Length = 224

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 10/158 (6%)

Query: 89  CMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++     +  ++  R      PV      +          + +  F   R   G+  L
Sbjct: 60  DLSMPGVSGFSGLIYLRAQYPAIPVVVVSASDDGETIRRSMEFGASGFIPKR--FGVETL 117

Query: 148 FPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                 ++   +W   ++ L      +M K  D    +   LT ++V  L  +SEG  + 
Sbjct: 118 REAISKVMNGDIWTPSDVDLSTGVDPDMAKLRD----RLITLTPQQVRVLMMLSEGLLNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 174 QIAYELGVSEATIKAHVSAILQKLGVESRTQAVIVAAK 211


>gi|256420776|ref|YP_003121429.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035684|gb|ACU59228.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 211

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  LT RE E L  I +  T+ EIA  L +S +TV N+  S++ K   K  +G +  A+
Sbjct: 147 KNTALTRREKEVLQLIIDEHTNQEIADKLFLSLHTVENHRISLLHKLEVKNTAGLVKVAL 206

Query: 242 RNNIV 246
           +  +V
Sbjct: 207 QTGLV 211


>gi|229102432|ref|ZP_04233140.1| Response regulator [Bacillus cereus Rock3-28]
 gi|228681079|gb|EEL35248.1| Response regulator [Bacillus cereus Rock3-28]
          Length = 212

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I        N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------CNLMESKEDECKIDTSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|154685055|ref|YP_001420216.1| YdfI [Bacillus amyloliquefaciens FZB42]
 gi|154350906|gb|ABS72985.1| YdfI [Bacillus amyloliquefaciens FZB42]
          Length = 211

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 14/176 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRY 130
            +     P  ++  + + E      + Q       P+      N     I       N Y
Sbjct: 41  RLAEELKPDVILMDLYMPEMSGLEAIKQIKEHSDVPIIILTTYNEDHLMIEGIESGANGY 100

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   +        ++  D L     +   +AN           + +LT +E
Sbjct: 101 LLKDTSSETLFHTMDAAVRGEVLLQPDILRRFREMKMERAN---------ANETQLTDKE 151

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L  +++G  S  IA  LGIS  TV   + SI  K    +R+ A+  A++  I+
Sbjct: 152 IIVLEAVAQGHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGIL 207


>gi|154488827|ref|ZP_02029676.1| hypothetical protein BIFADO_02135 [Bifidobacterium adolescentis
           L2-32]
 gi|154082964|gb|EDN82009.1| hypothetical protein BIFADO_02135 [Bifidobacterium adolescentis
           L2-32]
          Length = 234

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 33/72 (45%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A Q +          +   LT RE++ L  ++EG  + EIA  L +S  TV N I+ I+ 
Sbjct: 157 AVQGSRNPDSSGPSERFAGLTERELDVLELVAEGLDNREIASRLFLSEGTVRNRISDILA 216

Query: 227 KTATKTRSGAIA 238
           KT    R+    
Sbjct: 217 KTNISNRTKLAV 228


>gi|120601720|ref|YP_966120.1| two component LuxR family transcriptional regulator [Desulfovibrio
           vulgaris DP4]
 gi|120561949|gb|ABM27693.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris DP4]
          Length = 216

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 9/175 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTEL---FCPVFHTLPENITPPAGMDNRY 130
            IV    P  ++  + L   +       ++R  E         H     I          
Sbjct: 42  RIVEKHAPDIVLMDLTLPVMEGAEAIREIKRRRETTKVLALTAHKKDSLIYRTLSAGADG 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L      I    M     GR  +   + +  LL        +  +        L+ RE
Sbjct: 102 YLLKNASRDILFQAMQTVLAGRRYISPEISD--LLIDDFLRHGRRDEASMLD--LLSDRE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  ++EG  +  +A  L IS  TV  + A++ RK  T + +  + +A+ + +
Sbjct: 158 KQVLKLVAEGHGNKAVAEKLCISHKTVEKHKANLKRKLGTASTAELVTFAIEHGL 212


>gi|42523606|ref|NP_968986.1| two-component response regulator [Bdellovibrio bacteriovorus HD100]
 gi|39575812|emb|CAE79979.1| two-component response regulator [Bdellovibrio bacteriovorus HD100]
          Length = 204

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            LLA  +   F S ++    D      LT RE+E    I+ G+++ EIA +LG S  T+ 
Sbjct: 117 ALLALKRGERFLSANIREAIDKAGVEVLTKREIEVARMIATGRSNKEIAEVLGCSDQTIK 176

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  +IM K    T      +  +  +
Sbjct: 177 THKTNIMTKLGVNTSVEVAMWVTKQGL 203


>gi|16078980|ref|NP_389801.1| two-component response regulator DesK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309818|ref|ZP_03591665.1| hypothetical protein Bsubs1_10596 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314140|ref|ZP_03595945.1| hypothetical protein BsubsN3_10527 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319062|ref|ZP_03600356.1| hypothetical protein BsubsJ_10443 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323336|ref|ZP_03604630.1| hypothetical protein BsubsS_10562 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321311560|ref|YP_004203847.1| two-component response regulator DesK [Bacillus subtilis BSn5]
 gi|81815765|sp|O34723|DESR_BACSU RecName: Full=Transcriptional regulatory protein desR
 gi|2619014|gb|AAB84438.1| sensor regulator [Bacillus subtilis]
 gi|2634313|emb|CAB13812.1| two-component response regulator [DesK] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484510|dbj|BAI85585.1| hypothetical protein BSNT_03128 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320017834|gb|ADV92820.1| two-component response regulator (DesK) [Bacillus subtilis BSn5]
          Length = 199

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI  +    
Sbjct: 137 PLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKG 196


>gi|322437524|ref|YP_004219614.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165417|gb|ADW71120.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 216

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR-IRIGLMLL 147
            +   E      V    T++     H   E +        +   L  D  R + + +  +
Sbjct: 61  GLTGPEAAARMRVCAPRTKVLVLTMHDSEEVLREVLQAGAKGFMLKSDADRDLLMAVQRI 120

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                I + +R        + +               +LT RE E +  +++G TS E A
Sbjct: 121 SESDEIFVSER------AVSLRGGPLNVSGAGKASLAQLTVREREVMRLLADGMTSKEAA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS  TV ++  +I RK +  + +  + YA+RN I
Sbjct: 175 ARLCISTRTVESHRINISRKMSFGSVADLVRYAIRNGI 212


>gi|299141082|ref|ZP_07034220.1| transcriptional regulator [Prevotella oris C735]
 gi|298578048|gb|EFI49916.1| transcriptional regulator [Prevotella oris C735]
          Length = 212

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 35/83 (42%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +    A M            +LT  E E L  I+ G T+ EIA     S +TVN +  +
Sbjct: 123 FICQRMAEMLLVPMETASNRAKLTPTENEILKDIALGMTTREIAEKRFSSFHTVNTHRKN 182

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I RK    T   A  YA+R  +V
Sbjct: 183 IFRKLGVNTIHEATKYALRAGLV 205


>gi|317133287|ref|YP_004092601.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ethanoligenens harbinense YUAN-3]
 gi|315471266|gb|ADU27870.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ethanoligenens harbinense YUAN-3]
          Length = 784

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFEL 186
             Y  +          L LL         + L  +      QA ++  +          L
Sbjct: 665 RGYSFIWPVAQYGAAILPLLNDCSWACDMEYLHRLTAAVRAQAVLYPRFLKPLPAPSEPL 724

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  E + L  + E  ++ EI  IL I   TV  +++ I++K     RS A   A + +++
Sbjct: 725 SAAETQVLRLLCENLSNQEIGEILDIKLATVKTHVSHILQKLGVSRRSEAKDAAEKLHLI 784


>gi|312200760|ref|YP_004020821.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311232096|gb|ADP84951.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 338

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E    ++EG T+  IA  L ++  TV  ++ +I RK    +R+   A+     +
Sbjct: 275 LTARELEVAELVTEGLTNHAIAGRLSLAPRTVETHVENIRRKLQVSSRAQIAAWTTEQRL 334


>gi|288550286|ref|ZP_05969857.2| putative HTH-type transcriptional regulator YhjB [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315914|gb|EFC54852.1| putative HTH-type transcriptional regulator YhjB [Enterobacter
           cancerogenus ATCC 35316]
          Length = 199

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ + L  ++ G+++ EI   L IS  TV  ++ ++ R+   K R+ A 
Sbjct: 140 LSDRQHDVLKLLAAGESNKEIGRSLNISAATVKAHLETVFRRLDVKNRTQAA 191


>gi|145594124|ref|YP_001158421.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303461|gb|ABP54043.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 212

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 14/130 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +            R   L   V R+  G  LL P               +       
Sbjct: 91  FAAIMAGAAGYVLKQIRGTDLVDAVRRVSAGQSLLDP--------------AITTRVLER 136

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +S      +   LT +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + 
Sbjct: 137 IRSGVEQPRELKSLTDQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSMLAKLGLER 196

Query: 233 RSGAIAYAVR 242
           R+ A   A R
Sbjct: 197 RTQAAVLATR 206


>gi|124266879|ref|YP_001020883.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124259654|gb|ABM94648.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 240

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  ++EG ++  IA  LGI+  TV  ++ +++RK   ++R  A A+  R  
Sbjct: 176 QLSARERETLALVAEGCSNKLIARQLGIAEATVKIHVQNLLRKLGLESRVHAAAWYARLG 235


>gi|134101381|ref|YP_001107042.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914004|emb|CAM04117.1| protein kinase/transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 785

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E     +EG ++ EI+  L IS+ T   +I  I+ K    +RS   A+A  +
Sbjct: 723 LTPREREIAALTTEGLSNKEISARLVISQRTAEAHIEHILVKLGFSSRSQIAAWAAEH 780


>gi|24213516|ref|NP_710997.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45658638|ref|YP_002724.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24194296|gb|AAN48015.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45601882|gb|AAS71361.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 233

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S +        LT R+++ L +I+ G T  +IA  L IS +TV+ +I  I +K    ++
Sbjct: 154 ESKNQPIQNTLGLTKRKLQILNFIALGMTVSDIADELDISSHTVSRHIEKIYKKMEVHSK 213

Query: 234 SGAIAYAVRNNIV 246
           S AI    R  I+
Sbjct: 214 SEAIIRGRRMGII 226


>gi|333024259|ref|ZP_08452323.1| putative LuxR family transcriptional regulator [Streptomyces sp.
           Tu6071]
 gi|332744111|gb|EGJ74552.1| putative LuxR family transcriptional regulator [Streptomyces sp.
           Tu6071]
          Length = 1006

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 80/250 (32%), Gaps = 24/250 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
             E R +          L     P     +W + + A    + A+   L   D  +E  L
Sbjct: 755 ATEARDAVAGRALLDEALSTPFSPNVHRYAWPLLVAA--ARLEATTRGLPAADAGREAVL 812

Query: 75  DSIVSSDWP----------------FDLVRCMALSEKDKYYNVLQRPTELFCP---VFHT 115
           D I ++  P                 +L+R    +    +    +   +L  P   ++  
Sbjct: 813 DRIRAAARPVPTPVPVWHGYAELLRAELLRARGAATVADWEGTYEALRDLDRPHETLYVA 872

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           L    T  A  +    +      R   G     P  R      L   G L    +     
Sbjct: 873 LRLAETLLAAGERERAAHVLAPVRETAGRFGYAPLAR--EAAELARRGRLLP-ASEPPAR 929

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             +   +   LT RE E L  ++ G ++  IA  L IS  T + +++ I+ K     R  
Sbjct: 930 PALAPAQTLGLTARESEVLRLVAAGHSNRRIAETLYISPKTASVHVSRIIAKLGVTGRGE 989

Query: 236 AIAYAVRNNI 245
           A A A R  +
Sbjct: 990 AAAVAHRLRL 999


>gi|324997550|ref|ZP_08118662.1| putative GAF sensor protein [Pseudonocardia sp. P1]
          Length = 380

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE+E +  ++ G T+ +IA +L ++  TV  ++  I+RK     R+ A+   +R
Sbjct: 323 LTPRELEVMELMAAGHTNGKIASLLFVTEATVKAHVKHILRKLPAANRAEAVCRYLR 379


>gi|269103218|ref|ZP_06155915.1| nitrate/nitrite response regulator protein [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163116|gb|EEZ41612.1| nitrate/nitrite response regulator protein [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 208

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE++ L  +++G  + +IA  L IS +TV  ++ S+++K   K+R+ A  
Sbjct: 148 LTDRELQILQEVAKGHRNKQIADTLFISESTVKVHMKSLLKKLQVKSRTAATV 200


>gi|238059977|ref|ZP_04604686.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881788|gb|EEP70616.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 232

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 15/183 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +V    P  ++  + +   D       +L         +  T  ++ +    +      
Sbjct: 41  RLVERLRPDVVLMDIRMPRVDGIEATRRLLAAAPLTNVLILTTFADDDSVYGALSAGAVG 100

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------- 185
                        +L    R    + L    +LA       +S+      D E       
Sbjct: 101 YLVKDGEPAD---MLDAVRRAARGEPLLAPSVLARVVDRARRSHAADRNGDIEQPDTAVL 157

Query: 186 --LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L+ +  G ++ EIA  L +   TV  +I +++ K   + R  A   A R 
Sbjct: 158 AALTARERDVLSLVGVGLSNAEIARDLNVGVTTVKTHIVALLEKLGIRNRVQAGILAHRL 217

Query: 244 NIV 246
            +V
Sbjct: 218 GLV 220


>gi|226362416|ref|YP_002780194.1| serine/threonine protein kinase [Rhodococcus opacus B4]
 gi|226240901|dbj|BAH51249.1| putative serine/threonine protein kinase [Rhodococcus opacus B4]
          Length = 1087

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%)

Query: 163  GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
              +A        +     G   + T RE E    I+EG T+ EIA  L IS  T   ++ 
Sbjct: 1002 AAVAYALGEQVSAASTSAGPSPKPTKREREVAALIAEGLTNKEIAARLVISPRTAQGHVE 1061

Query: 223  SIMRKTATKTRSGAIAY 239
             ++ K    +R+   A+
Sbjct: 1062 HLLTKLGFNSRAQIAAW 1078


>gi|260881742|ref|ZP_05405135.2| DNA-binding response regulator VraR [Mitsuokella multacida DSM
           20544]
 gi|260848301|gb|EEX68308.1| DNA-binding response regulator VraR [Mitsuokella multacida DSM
           20544]
          Length = 223

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 40/82 (48%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +   +   + +  D     +  LT RE+E L  I +  + +EIA  LGI++ TVN +I +
Sbjct: 125 MAGEHVFPVIRGRDTFGAAEASLTERELEILQLICQSLSREEIAARLGIAKRTVNFHITN 184

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
           ++ KT  K+  G    A    +
Sbjct: 185 MLEKTGHKSIVGLAVEAAEKGL 206


>gi|219117733|ref|XP_002179656.1| diatom response regulator 2 [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408709|gb|EEC48642.1| diatom response regulator 2 [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 222

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 11/170 (6%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELF---CPVFHTLPENIT-----PPAGMDNRYCSLT 134
           P  +V  + +        + +   ++     PV     + +T           + Y    
Sbjct: 52  PDAIVSDIRMPGMSGLQLLREIREDVHIMGVPVILLTAKGLTQDRIVGYDAGADAYIPKP 111

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
           FD   +   L  +  + R +  D   +I  +   +             D  LT  E E L
Sbjct: 112 FDPEELVTILDNVIDRHRTLSED---KIKYMLLEKGGGGVGNGFVEATDVFLTPDEREIL 168

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             + +G  + EI     +S   V   ++ + RK   K R+  + +A+   
Sbjct: 169 ELLCQGLINKEIGERTFLSTRRVEQLLSGMFRKANVKNRTELVRWAISTG 218


>gi|187777587|ref|ZP_02994060.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC
           15579]
 gi|187774515|gb|EDU38317.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC
           15579]
          Length = 218

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + RE++ +  ISEG ++ EI+  L IS  TV NYI+SI+ KT  + R+    Y
Sbjct: 156 FSRREIDVIEAISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQIAIY 209


>gi|302536569|ref|ZP_07288911.1| two-component system response regulator [Streptomyces sp. C]
 gi|302445464|gb|EFL17280.1| two-component system response regulator [Streptomyces sp. C]
          Length = 232

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L   V   R G     P     +   L          A   +   VH    F L+ REVE
Sbjct: 115 LVRAVRDARDGRAHFTPTAATAVLAELRSSSQTQPSVAQSTER--VHNSVVFGLSSREVE 172

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +  I+ G  + +IA    IS  TV N+I  I  K  + +RS AIA 
Sbjct: 173 IMDLIASGMNNQQIAGACFISEKTVKNHINRIFAKLQSTSRSEAIAR 219


>gi|170745123|ref|YP_001766580.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170658724|gb|ACB27778.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 198

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 2/111 (1%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D     +         +    DR+  + +L    A    +          LT R+ E LT
Sbjct: 89  DTVSTALAHGACAFLSKADRPDRM--MTVLREMLARSSAAPRAGAALCPTLTPRQAEVLT 146

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G ++  I   LG+S +TV  ++  ++       R+ A+  A +  ++
Sbjct: 147 LVGRGLSNKMIGRSLGLSEHTVRGHVQGLLSVLGVTRRAEAVFKAQQLGLI 197


>gi|168700566|ref|ZP_02732843.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 216

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +  L     + +        G   +L+ RE E +  I+ G ++ EIA  L +S  TV  Y
Sbjct: 128 DPALATGELSEVNDPARDAGGTGADLSERETEVVRLIALGYSNKEIAGRLKLSVKTVETY 187

Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244
               M K   +TR   + YA R  
Sbjct: 188 KTRSMEKLGVRTRVDIVQYAARRG 211


>gi|110678944|ref|YP_681951.1| transcriptional activator protein RaiR, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455060|gb|ABG31265.1| Transcriptional activator protein RaiR, putative [Roseobacter
           denitrificans OCh 114]
          Length = 239

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGR-----IILRDRLWEIGLLAAY--QANMFKSYD 177
           G+ N+  S+       +  L  +              +   E+ L+A Y  Q  +    +
Sbjct: 109 GLGNQGYSIPIRGPNGQFALFTVNTSCDDEEWAKFTEENRRELILIAHYFNQKALEFEPN 168

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   L+ RE++ +T ++ G    ++A  L IS +T+  YI S   K      + A+
Sbjct: 169 KTPEQSQALSPREIDAMTLLAIGYNRAQVAETLSISEHTLRVYIESARFKLGAANTTHAV 228

Query: 238 AYAVRNNIV 246
           A A+   ++
Sbjct: 229 ARALSRGLI 237


>gi|77410614|ref|ZP_00786974.1| response regulator [Streptococcus agalactiae CJB111]
 gi|77163329|gb|EAO74280.1| response regulator [Streptococcus agalactiae CJB111]
          Length = 196

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A
Sbjct: 135 PLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190


>gi|288921041|ref|ZP_06415332.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288347559|gb|EFC81845.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 1061

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 183  DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +  L+ RE +    ++EG T+ +IA  L IS  T  N++  I+ K   + RS   A+ VR
Sbjct: 989  EEMLSPRERQVARLVAEGLTNRQIAARLVISERTAQNHVQHILTKLGFRARSQIAAWVVR 1048

Query: 243  N 243
            N
Sbjct: 1049 N 1049


>gi|256420108|ref|YP_003120761.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035016|gb|ACU58560.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM
           2588]
          Length = 234

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT RE + L    +G  + EIA  L +SR T+  +  +I  K   +  +  IA
Sbjct: 167 HEDLISKLTPREKDILKLTVKGLNNKEIAAELNLSRYTIETHRKNIRIKLKVRNTTELIA 226

Query: 239 YAVRNN 244
            A +  
Sbjct: 227 LARKVG 232


>gi|223936027|ref|ZP_03627941.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895249|gb|EEF61696.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  L+ RE E L  +S+G    EIA  LGIS  TV+ YI  I  K   +TR+ A+A  +
Sbjct: 148 PEHNLSTREQEVLDCLSQGFLYKEIAEKLGISYETVHTYIRRIYEKLQVRTRTEAVAKFL 207

Query: 242 RN 243
           + 
Sbjct: 208 KR 209


>gi|23006356|ref|ZP_00048713.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 180

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REV  L  ++ G+++  IA  L I+  TV  ++ +I+RK   K R+ A  +A+   I
Sbjct: 86  LSSREVNILEGLALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKGI 145

Query: 246 V 246
           V
Sbjct: 146 V 146


>gi|318061538|ref|ZP_07980259.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076628|ref|ZP_07983960.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 219

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 2/155 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L   +++  VL          F          AG    +   + D   +  G+  L   
Sbjct: 61  GLGAAEEFARVLPGTAVGMLTTFSEGEYVERALAGGAAGFLLKSGDPYELIAGVRALAAG 120

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  +       +  L        +           LT RE E L  ++ G ++  IA  L
Sbjct: 121 GAFLAPRVTRHV--LDGLGGRRLERAAGARRAVARLTPREREVLVLLAGGLSNAGIAERL 178

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G+S  TV  Y++ ++ +     R  A   A    +
Sbjct: 179 GLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 213


>gi|312960770|ref|ZP_07775275.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284428|gb|EFQ63004.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 218

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ + L  I+ GKT+ EIA  L IS  TV  +++++++     TR+ A A
Sbjct: 149 LTARQKQVLGLIAAGKTNKEIAKQLDISPFTVRIHVSTLLKSLGVPTRAAAAA 201


>gi|307128200|ref|YP_003880231.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|306485262|gb|ADM92131.1| response regulator [Streptococcus pneumoniae 670-6B]
          Length = 199

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V   +   LT +E+  L  I+ G ++ EIA  L +S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|281424125|ref|ZP_06255038.1| transcriptional regulator [Prevotella oris F0302]
 gi|281401782|gb|EFB32613.1| transcriptional regulator [Prevotella oris F0302]
          Length = 212

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 35/83 (42%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +    A M            +LT  E E L  I+ G T+ EIA     S +TVN +  +
Sbjct: 123 FICQRMAEMLLVPMETASNRAKLTPTENEILKDIALGMTTREIAEKRFSSFHTVNTHRKN 182

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I RK    T   A  YA+R  +V
Sbjct: 183 IFRKLGVNTIHEATKYALRAGLV 205


>gi|149187165|ref|ZP_01865463.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148838701|gb|EDL55640.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 225

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           IL   +W    L      +++    H    +  +LT RE E +  +  G ++ +IA  L 
Sbjct: 127 ILNGEMWMSRKLVYEYIKLYRGKHCHTTNPYYTKLTRREQEIIKLLGNGASNTQIAETLF 186

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +S NTV  ++ +  +K     R  A+ +A
Sbjct: 187 VSENTVKAHLHNTFKKIKVNNRLQALIWA 215


>gi|229542357|ref|ZP_04431417.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229326777|gb|EEN92452.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 200

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 17/118 (14%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     ++  +   +       R+   + +++                    ++  LT 
Sbjct: 100 GYLLKDGEIRELADAIRKCVAGKRVFSPELMFDA-----------------IREENPLTE 142

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L   + GKT+  I   L +S  TV NYI+ I+ K     R+ A + A     +
Sbjct: 143 REQQILRLAALGKTTKAITEELYLSSGTVRNYISDIIHKLGANNRTEAASIAEEKGWI 200


>gi|111221107|ref|YP_711901.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111148639|emb|CAJ60313.1| Putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 340

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E L  ++ G T+ +IA  L +S  TV +++  I+RK     RS A+A 
Sbjct: 275 LTPREREVLRILAGGATNAQIAAALTVSETTVKSHVKHILRKLRATNRSEAVAR 328


>gi|90410965|ref|ZP_01218979.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum 3TCK]
 gi|90328178|gb|EAS44489.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum 3TCK]
          Length = 194

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE + L  +++G  + +IA  L IS  TV  ++ S+++K   K+R+ A  
Sbjct: 134 LTDRETQILQEVAKGYRNKQIADALFISEATVKVHMKSLLKKLQVKSRTAATV 186


>gi|332199316|gb|EGJ13394.1| response regulator [Streptococcus pneumoniae GA41317]
          Length = 199

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V   +   LT +E+  L  I+ G ++ EIA  L +S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|326385152|ref|ZP_08206820.1| two-component transcriptional regulatory protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196117|gb|EGD53323.1| two-component transcriptional regulatory protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 217

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 3/158 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR    S  D    +L +   L C +  +  E+      +          V +   G+ L
Sbjct: 56  VRLPDGSGIDLCRELLAKVPGLRCLILTSFTEDQAMLDAIMAGASGF---VIKDITGMEL 112

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +     L +    A     + K  +   G   + T +E   L  + EG T+ +I
Sbjct: 113 AKAVREVGEGKSLLDNRAAAVLMERLRKQQEQDAGPLADFTQQERTLLALLGEGLTNRQI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  + ++  TV NY++ ++ K   + R+ A  +A R  
Sbjct: 173 ADRMHLAEKTVKNYVSRLLTKLGMERRTQAAVFATRIG 210


>gi|291009882|ref|ZP_06567855.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 746

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E     +EG ++ EI+  L IS+ T   +I  I+ K    +RS   A+A  +
Sbjct: 684 LTPREREIAALTTEGLSNKEISARLVISQRTAEAHIEHILVKLGFSSRSQIAAWAAEH 741


>gi|312194794|ref|YP_004014855.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226130|gb|ADP78985.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 219

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 37/80 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +     +  +   V   +   L  RE E    + EG ++ +IA  LG+S  TV NY++S
Sbjct: 125 AVTRRVLHRLREGPVQDPRLAPLGDREREVFHLLGEGLSNRQIAGRLGLSDKTVKNYVSS 184

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           ++ K    +R+ A   A + 
Sbjct: 185 MLSKLRLTSRTQAAILATKT 204


>gi|269961706|ref|ZP_06176067.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3]
 gi|269833571|gb|EEZ87669.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3]
          Length = 212

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA 
Sbjct: 147 KPNPLSRREEAVLKLVAQGNSSKKIATLLDISYRTVETHRHNIKHKLDLHSTAELAKYAF 206

Query: 242 RNNIV 246
              ++
Sbjct: 207 ETGLI 211


>gi|13471370|ref|NP_102936.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099]
 gi|14022112|dbj|BAB48722.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099]
          Length = 206

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +S+G T+ +IA   GIS NTV  ++ ++  K   + R+ A+A   R  
Sbjct: 139 QLTVRERELLAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVALYARER 198


>gi|237654658|ref|YP_002890972.1| transcriptional regulator NarL [Thauera sp. MZ1T]
 gi|237625905|gb|ACR02595.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 214

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 14/159 (8%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++R +  +  +    ++   ++    V   L          D    ++   +  +  G 
Sbjct: 67  DMLRGLRAARSEARVVMVTV-SDSGEDVVAALRGGAEGYLLKDMEPEAMLEALQAVAAG- 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                  R+++  +L  +   A    +  +S          LT +E+  L  I+ G  + 
Sbjct: 125 -------RVVIPPQLNHLLAAALRGESRPQSAGAA-----GLTEQELRILEKIAAGLPNK 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +I   L I+  TV  ++  I+RK   ++R  A  +AV +
Sbjct: 173 QIGRELDIAEGTVKVHVKHILRKLELRSRVEAAVWAVEH 211


>gi|148242000|ref|YP_001227157.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147850310|emb|CAK27804.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 234

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + L +    A   A+             +L+ RE   L  + EG T+ EI   L I+ +T
Sbjct: 145 EALMQGLRYAGPVASHVLRDGPERSAQ-DLSSREHSVLELVCEGFTNREIGQHLHIAEST 203

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              ++ +I+ K   + R+ A A  VR ++V
Sbjct: 204 ARGHVQAIIGKLHVRDRTAAAAEGVRRHLV 233


>gi|260684735|ref|YP_003216020.1| salavaricin two-component response regulator [Clostridium difficile
           CD196]
 gi|260688393|ref|YP_003219527.1| salavaricin two-component response regulator [Clostridium difficile
           R20291]
 gi|260210898|emb|CBA66091.1| salavaricin two-component response regulator [Clostridium difficile
           CD196]
 gi|260214410|emb|CBE06831.1| salavaricin two-component response regulator [Clostridium difficile
           R20291]
          Length = 206

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + I  D L +  LL  YQ       +       +LT  E   L  I  GK    IA  L
Sbjct: 108 NKNISPDSLID-SLLKVYQGVTCFPSENTEVIIEDLTNMEKRILQLICSGKKRKIIADEL 166

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  T++N++  I  K    +   AI  A++   +
Sbjct: 167 YISERTLSNHLQHIYDKLDVSSSVEAITKAIKMGYI 202


>gi|86357364|ref|YP_469256.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281466|gb|ABC90529.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 207

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M  S          LT RE E +  +++G ++  I + L +   TV +++  I+ K    
Sbjct: 135 MENSLQNGSSDKNSLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGAS 194

Query: 232 TRSGAI 237
            R+ A 
Sbjct: 195 NRTEAA 200


>gi|322506326|gb|ADX01780.1| ER transcriptional regulator [Acinetobacter baumannii 1656-2]
          Length = 58

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTS EIA ILG++  TVN ++++ M+K     +  A   AV   ++
Sbjct: 10  AEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 58


>gi|290963130|ref|YP_003494312.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260652656|emb|CBG75789.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 219

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE +    ++ G+T+ EI   L +S +TV  ++A+I +K   + R    A+A    +
Sbjct: 156 LTERERDVARLVAVGRTNQEICDRLVVSLSTVKTHLANIQQKIDARNRVEIAAWAWEQGV 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|257054193|ref|YP_003132025.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256584065|gb|ACU95198.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 214

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 5/144 (3%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
            +  +P    C V     +       +            R +  +       R +   R 
Sbjct: 71  ELRSQPAAPRCLVLTAFDDEEAMVGAIMAGASGYLLKQVRGQDVV----HAVREVAAGRS 126

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               L  A      +S +       +L+ RE   L  I +G ++ EIA  L ++  TV N
Sbjct: 127 LLDPLTTARLLEKVRSPE-RPDPLDKLSERERSVLELIGQGLSNREIAERLFLAEKTVKN 185

Query: 220 YIASIMRKTATKTRSGAIAYAVRN 243
           Y+ S++ K   + R+ A A+  R+
Sbjct: 186 YVTSLLSKLGMRRRTQAAAWVARH 209


>gi|90407707|ref|ZP_01215886.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp.
           CNPT3]
 gi|90311176|gb|EAS39282.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp.
           CNPT3]
          Length = 211

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              V   +          D+    L  ++ ++  G ++L       L D           
Sbjct: 90  KQDVIAMINHGANGYFLKDSDASLLLSNINKVLAGELVLSDDLIKYLND----------- 138

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                   D    K   LT RE + L  I++G+++ EI++ L IS  TV  ++ S+++K 
Sbjct: 139 ----LDEEDNIREKLNNLTKRERQILQEIAKGQSNKEISINLHISEGTVKVHVKSLLKKL 194

Query: 229 ATKTRSGAIAYAVRN 243
             K+R  A    ++ 
Sbjct: 195 QAKSRVEAAIVYLQQ 209


>gi|71065169|ref|YP_263896.1| nitrate/nitrite response regulator [Psychrobacter arcticus 273-4]
 gi|71038154|gb|AAZ18462.1| nitrate/nitrite response regulator, possibly NarL [Psychrobacter
           arcticus 273-4]
          Length = 219

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R ILR  L     LA+  A   ++  +       LTGRE++ +  I+EG ++  IA  L 
Sbjct: 126 RKILRGELVISPNLASILAQTLRTPSIE-DIAGSLTGRELQVIQMIAEGLSNKMIANKLD 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           I+ +TV  ++  I+ KT  +TR  A  + V +
Sbjct: 185 IAESTVKVHVKHILNKTGLRTRVDAAVWTVNH 216


>gi|298245139|ref|ZP_06968945.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552620|gb|EFH86485.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 337

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    +   LTGRE E L  +  G+ + EIA  L I+ +TV+ ++ +I  K   + R+ A
Sbjct: 212 DKPRRRPRPLTGREREILDLMRLGRKNREIAKELCIAESTVHKHVQNIFEKLRARNRTEA 271

Query: 237 I 237
           I
Sbjct: 272 I 272


>gi|225025960|ref|ZP_03715152.1| hypothetical protein EUBHAL_00197 [Eubacterium hallii DSM 3353]
 gi|224956746|gb|EEG37955.1| hypothetical protein EUBHAL_00197 [Eubacterium hallii DSM 3353]
          Length = 215

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   S  +      ELT +E+E L  + EG    EIA  + IS+ TV  +I++I+ KT  
Sbjct: 128 DKTPSVKLGLADSSELTAKEIEVLRLVCEGLEYSEIAERMHISQRTVKFHISNILSKTGY 187

Query: 231 KTRSG-AIAYAVRNNIV 246
             ++  AIA   +N I+
Sbjct: 188 ANKTRLAIAVTNKNFII 204


>gi|212634641|ref|YP_002311166.1| nitrate/nitrite DNA-binding response regulator [Shewanella
           piezotolerans WP3]
 gi|212556125|gb|ACJ28579.1| Nitrate/nitrite DNA-binding response regulator, putative
           [Shewanella piezotolerans WP3]
          Length = 206

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 22/190 (11%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLV-RCMALSEKDK-YYNVLQRPTELFCPV----FHTL 116
           L   D  Q+      + +  P DLV   + + + D  Y   L +  EL C V     H  
Sbjct: 30  LAEADNGQQALE---ILNKMPVDLVLTDINMPQMDGMYLLELIKEQELSCKVVMLSMHDN 86

Query: 117 PENITPP-AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
            E I        + Y         +   +  +    R    D +  +            S
Sbjct: 87  KEYIMATMRYGADGYILKDVPGKELIEAIKKVAAGKRYFSADVINTL------------S 134

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            ++  GK   +T RE   L  IS G  +  IA  + +S  TV  +  +I +K    + +G
Sbjct: 135 QELASGKQALVTQREQLVLRLISLGMNNKRIAQEMDVSVRTVETHKRNIKQKLMIDSTAG 194

Query: 236 AIAYAVRNNI 245
            + YA+ + +
Sbjct: 195 LVRYAIDHGL 204


>gi|163852985|ref|YP_001641028.1| regulatory protein LuxR [Methylobacterium extorquens PA1]
 gi|163664590|gb|ABY31957.1| regulatory protein LuxR [Methylobacterium extorquens PA1]
          Length = 213

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQAN---MFKSYDVHWGKDFELTGREVECLTWI 197
           R     +    R IL  RL+    + +  ++   +         + F LT R++E L+ I
Sbjct: 106 RQSQEEVLVAVRTILEGRLYAPSAILSGSSSDSTLPVRRPELGERPFGLTVRQLEVLSLI 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +G ++ EIA +L I+  TV  +++++ R    + R+ A 
Sbjct: 166 GKGLSNREIADVLRIAEATVKIHVSAVFRALGVRNRTEAA 205


>gi|126727851|ref|ZP_01743680.1| two component transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126702873|gb|EBA01977.1| two component transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 232

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    +   LT ++   L  I EGK + +IA  L I+  TV  ++ +IMRK    +R+ A
Sbjct: 157 DTVISRLASLTNQQARILELICEGKLNKQIAFELTIAETTVKAHVTAIMRKLQVHSRTQA 216

Query: 237 IAYA 240
           +  A
Sbjct: 217 VLVA 220


>gi|295084625|emb|CBK66148.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bacteroides xylanisolvens XB1A]
          Length = 202

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 35/80 (43%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y      S          L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  
Sbjct: 118 GYPVKDMPSMPPAQPHQEILSSREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITE 177

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ SG   YAV N  +
Sbjct: 178 KLGIKSVSGLTIYAVMNGYI 197


>gi|294675445|ref|YP_003576061.1| LuxR family transcriptional regulator [Prevotella ruminicola 23]
 gi|294472990|gb|ADE82379.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23]
          Length = 213

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 18/136 (13%)

Query: 118 ENITPPAGMDNRYCSLTF-------DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
           + +TP       Y S  F        +  +R  L  +    R I +  L           
Sbjct: 82  DELTPQFLRRVIYSSHQFSIVFKDGPMKDVRDALHAVSHHQRFISQRAL----------- 130

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            +  S      K   LT  E E +  I++GKT+ EIA     S +T+  +  +I RK   
Sbjct: 131 EVIISQQNDEEKPDILTATEAEIVKAIAQGKTTKEIAEERFSSIHTITTHRKNIFRKLGI 190

Query: 231 KTRSGAIAYAVRNNIV 246
            T    I YA+R  +V
Sbjct: 191 NTAHELIKYAIRAGLV 206


>gi|225352276|ref|ZP_03743299.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157523|gb|EEG70862.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 223

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              RE E +   S G TS EI + LGI   TV  YI  +M+K   K R+ A+ 
Sbjct: 161 FAKREREVMGLCSLGFTSKEIGIKLGIGEPTVKTYIRRVMKKLGAKNRTQAVI 213


>gi|284008488|emb|CBA74985.1| two-component system, NarL family, nitrate/nitrite response
           regulator [Arsenophonus nasoniae]
          Length = 206

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           + + +        +   +      LT RE E L  I+ G  + EI+  L IS  TV  +I
Sbjct: 124 LPVFSNQIHQYLNNRHQYQDPLSSLTKREFEVLREIANGLKNREISKYLFISEETVKVHI 183

Query: 222 ASIMRKTATKTRSGAIAYAVR 242
            ++++K   ++R  A    +R
Sbjct: 184 RNLLKKLNVRSRLEASLVYMR 204


>gi|302533152|ref|ZP_07285494.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442047|gb|EFL13863.1| two-component system response regulator [Streptomyces sp. C]
          Length = 216

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 13/135 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V+  L            R   +   V  +  G  LLFP               + A  A 
Sbjct: 92  VYQALRAGADGFLLKRARPSEIVHAVRLVAEGETLLFP-------------AAVRALAAE 138

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   LT RE   L  ++ G T+ EI+  L +   TV +++++++ K   +
Sbjct: 139 YGNREARAVLERAALTEREEAVLRLMARGLTNVEISRELIVGTETVKSHVSAVLGKLGAR 198

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+  A  +  V
Sbjct: 199 DRTQAVIAAYESGFV 213


>gi|212638135|ref|YP_002314655.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559615|gb|ACJ32670.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 213

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           R +   +       MF   +        LT RE E +     G T+++IA  L IS  TV
Sbjct: 126 RFYRTHIPEERLEKMFAEKEPRS----PLTNREREIVRLTFLGYTNNQIANKLKISPKTV 181

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
            N+  +IM+K   K +   I YA++N+I
Sbjct: 182 ENHKTNIMQKLGIKEKHELIQYALKNHI 209


>gi|118477263|ref|YP_894414.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118416488|gb|ABK84907.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 233

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 16/230 (6%)

Query: 17  EQRTSFVSHLPT-RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +++   VS   +  +++  +++  D        M  +        F +V      ++ ++
Sbjct: 6   QRKDVNVSRGSSILTNMKIKILIADDNSFIREGMKIILNTYE--EFEVVDTVNDGKEAVE 63

Query: 76  SIVSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---Y 130
               +D    L  VR   ++  +    + +  TE    +  T  ++      + N    Y
Sbjct: 64  YCKKNDVDIALLDVRMPNMNGVEATKLICEE-TETKPLILTTFDDDEYILDAVKNGAKGY 122

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGR 189
                D  RIR  +  ++    ++    L +I        N+  S +     D  L T R
Sbjct: 123 LLKNNDPERIRDAIKGVYNGQTVMQDVVLDKIK------CNLMGSKEDECKIDTSLFTER 176

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E+  +  I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 177 ELSIIALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226


>gi|77408114|ref|ZP_00784861.1| response regulator [Streptococcus agalactiae COH1]
 gi|77173298|gb|EAO76420.1| response regulator [Streptococcus agalactiae COH1]
          Length = 196

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A
Sbjct: 135 PLSKQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190


>gi|261404049|ref|YP_003240290.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261280512|gb|ACX62483.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 203

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G +S++IA  L +S  TV NY++ I+ K   K R  AI+ A    
Sbjct: 142 PLTEREREVLRLAADGNSSNDIAAKLHLSYGTVRNYMSEILSKLNAKNRIEAISLAEEKG 201

Query: 245 IV 246
            +
Sbjct: 202 WI 203


>gi|86751663|ref|YP_488159.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86574691|gb|ABD09248.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 224

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +    F V ++   ++ +      +  D   ++   A  + +  +       +   L
Sbjct: 104 ASGFVPKRFGVEKLGDAILRVLDGDVWVPPD--VDLSAAADPETSKLR------DRLVTL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 156 TPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|309782452|ref|ZP_07677176.1| LuxR family Two Component Transcriptional Regulator [Ralstonia sp.
           5_7_47FAA]
 gi|308918789|gb|EFP64462.1| LuxR family Two Component Transcriptional Regulator [Ralstonia sp.
           5_7_47FAA]
          Length = 219

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-----------ANMFKSYDVHWGKDF 184
            V R  +G  L F    ++ R    ++ L A  +           +N++     H   + 
Sbjct: 83  AVGRHVVGDALRFGAAGVVDRQATADVLLEALQRITSGAVYLPPISNLYPDDPRHTPGES 142

Query: 185 E------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT R+ E L  ++EGK++ +I  +L ++  T+ N++ ++ R+     R+ A  
Sbjct: 143 PAELWRRLTPRQHEVLQLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVNNRTEAAL 202

Query: 239 Y 239
           +
Sbjct: 203 W 203


>gi|295697043|ref|YP_003590281.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
 gi|295412645|gb|ADG07137.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912]
          Length = 320

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 13/162 (8%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
            +   +   T L   + +T+       AG+D +  +L   +  +   +M     G  + +
Sbjct: 138 GWAVGIASATLLMGLLAYTIARLNELQAGLDRQRHALKEALTELLATMMSPMGIGENVFK 197

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFE------------LTGREVECLTWISEGKTSD 204
                + LL        +S  V  G+ F              T RE E L  +SE K+  
Sbjct: 198 QEQIRV-LLEELCQTASRSKGVEAGRIFAQIIARRQEALELFTPREFEVLCLLSENKSYR 256

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L IS  TV  ++A +MRKT   +R     +A ++ ++
Sbjct: 257 QIAQHLQISEGTVRAHVAGMMRKTQVHSREELTVWARKHCLI 298


>gi|255264294|ref|ZP_05343636.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62]
 gi|255106629|gb|EET49303.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62]
          Length = 214

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  +++GK++ E+A+ L IS  TV  +  +I RK    T +G   YA+ N +
Sbjct: 147 LTNREQSILLQLAQGKSNKEVAIDLEISVRTVETHRKNIKRKLGISTTAGLTRYAMENGV 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|254472068|ref|ZP_05085469.1| two component transcriptional regulator, LuxR family [Pseudovibrio
           sp. JE062]
 gi|211959270|gb|EEA94469.1| two component transcriptional regulator, LuxR family [Pseudovibrio
           sp. JE062]
          Length = 219

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 77/212 (36%), Gaps = 21/212 (9%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE--QKLDSIVSSDWPFDLVRCMALSEKD 96
           +             T     +   ++      E    LD     D    ++  +++    
Sbjct: 10  IADDHPLFRGAMRQTIEKQFASVKIIEAGSLDEVTAALDREEDVDM---ILLDLSMPGMR 66

Query: 97  KYYNVLQ-RPTELFCP--VFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPK 150
            +  ++  R   +  P  V     +  T  + ++   + Y   +  +  I+ G+ ++   
Sbjct: 67  GFSGLMYLRAQYVGVPIVVVSGTEDPTTIRSAIEFGASGYIPKSLGIDVIQDGVSVVLEG 126

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  I  D        A   A    S          LT ++V  L  +S+G  + +IA  L
Sbjct: 127 GVWIPPDIDLNTVDEATKMAQRLAS----------LTPQQVRVLMMLSQGLLNKQIAYEL 176

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +S  TV  ++++I++K   ++R+ A+  A +
Sbjct: 177 SVSEATVKAHVSAILQKLGVESRTQAVIAAAK 208


>gi|319644871|ref|ZP_07999104.1| sensor regulator [Bacillus sp. BT1B_CT2]
 gi|317392680|gb|EFV73474.1| sensor regulator [Bacillus sp. BT1B_CT2]
          Length = 199

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI  +    
Sbjct: 137 PLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKG 196


>gi|302551208|ref|ZP_07303550.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468826|gb|EFL31919.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 231

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNR 129
             V  + P  ++  + + + D    + +  T    PV      F      +T        
Sbjct: 48  ETVRRERPDVVLLDIRMPDVDGLTVLRELRTRPDPPVVAMLTTFDADEYILTALNSGAAG 107

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +     +  ++   +  L   G ++          L         + D    +   LT R
Sbjct: 108 FLLKDTEPEQLAHLVRTLVAGGVVLSPKASRT---LLHSHPGTEAAVDEEAARVRLLTPR 164

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  ++EG ++ +I   + +   TV +++++I+ K    +R  A   A R  ++
Sbjct: 165 ERDVLVLVAEGLSNADIGARIHLGAGTVKDHVSAILTKLRVTSRVQAALLAQRAGLL 221


>gi|302538977|ref|ZP_07291319.1| response regulator [Streptomyces sp. C]
 gi|302447872|gb|EFL19688.1| response regulator [Streptomyces sp. C]
          Length = 222

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 14/138 (10%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAY 168
           F  L    +     + R   L   +  +  G  +L P+    L    R RL + G   A 
Sbjct: 92  FAALGAGASGFLLKNTRPEELLTAIRNVAAGDAVLSPRITRRLLEDFRPRLADGGAAVAV 151

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +                L+ RE E L  +  G ++ EIA  L ++  TV +++  ++ K 
Sbjct: 152 RDERLGR----------LSAREREVLVEVGRGLSNAEIAAALSLAEATVKSHLGRVLLKL 201

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + R  A+ +A  N +V
Sbjct: 202 GLRDRIQAVVFAHENRLV 219


>gi|254453849|ref|ZP_05067286.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
 gi|198268255|gb|EDY92525.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
          Length = 204

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  ++EGK++ +IA  L I   TV  ++ ++ RK   + R+ A   A    
Sbjct: 143 KLTERELQMLKGLTEGKSNKQIARDLEIREPTVKLHMKTLYRKMGVENRTQAAMIASEAG 202

Query: 245 I 245
           +
Sbjct: 203 L 203


>gi|171317077|ref|ZP_02906281.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171097778|gb|EDT42602.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
          Length = 204

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 16/169 (9%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  L+  + L   D   +++QR             ++ T    + + Y +  F +     
Sbjct: 47  PDLLIVDIDLDGMDG-IDLIQRVR----------IKDATVKILVFSGYSAELFALRCHAA 95

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDFELTGREVECLTWI 197
           G      K   +         +LA +       N   S          L+ RE+  L ++
Sbjct: 96  GANGYVNKSEDVTHVLSAANAVLAGFHCFPLDINAMASGSGPHAAFAMLSERELTVLRYL 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EI   L +S  T++ + A+I+ K          A+A  ++++
Sbjct: 156 AKGLSNKEIGDSLSLSNKTISTHKANILAKLGFTNVVDLAAFAKAHHLI 204


>gi|330720530|gb|EGG98815.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [gamma proteobacterium IMCC2047]
          Length = 238

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ R++E L  I  GK++  IA  LG++  TV  +++ I +K     R+ A+A 
Sbjct: 175 LSRRQLEVLGLIISGKSNQAIAEELGLTTPTVKMHVSGIFKKLNVSNRTEAVAK 228


>gi|288916240|ref|ZP_06410620.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288352431|gb|EFC86628.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 189

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 4/134 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D     L   +  +  G  LL P     L DR             
Sbjct: 58  VFAGLRAGASGFLLKDAPPEDLLTAIRVVAAGDALLSPAATRRLIDRFTATPPAEGDAPE 117

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S  +       LT RE + LT ++ G ++ EIA  L ++ +T+  ++ +++ KT+++
Sbjct: 118 PSPSRQLLS----RLTDRERDVLTRVARGMSNAEIAADLVLATSTIKTHMTNLLAKTSSR 173

Query: 232 TRSGAIAYAVRNNI 245
            R+  + +A  + +
Sbjct: 174 DRTQLVIFAYESGL 187


>gi|317130513|ref|YP_004096795.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475461|gb|ADU32064.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 155

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE E +  I +G  +  I   LGIS +TV N+I++I +K   K R   I
Sbjct: 99  LSQREKEVIIHICKGLDNASIGESLGISPHTVKNHISNIYQKLNVKDRLQLI 150


>gi|315498474|ref|YP_004087278.1| two component transcriptional regulator, luxr family [Asticcacaulis
           excentricus CB 48]
 gi|315416486|gb|ADU13127.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
          Length = 240

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 3/143 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            E F  V     E    P  + +   +        R G +    K + + R +      L
Sbjct: 94  AEGFSGVALLHAEVPHVPVLVVSAAEAEKAAREARRFGAVGFIGKDQPLPRMQEAISDAL 153

Query: 166 AAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
               ++   +    D    K  +LT  ++  L  +  G+ + +IA  L IS  TV  ++ 
Sbjct: 154 EGRISDTPPADPEVDTVAAKVADLTPTQLRVLLGVLAGRLNKQIAYDLSISEATVKAHMT 213

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           +IMRK   + R+ A+  A    I
Sbjct: 214 AIMRKLDVQNRTQAVLAARALGI 236


>gi|254786770|ref|YP_003074199.1| positive regulator AgmR [Teredinibacter turnerae T7901]
 gi|237687202|gb|ACR14466.1| positive regulator AgmR [Teredinibacter turnerae T7901]
          Length = 212

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 37/63 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT ++   L +++EG ++ EIA+ LG+S +T   Y++ ++ +     R+ A+  A R 
Sbjct: 142 IDLTTQQRATLRYLAEGLSNKEIAIQLGVSPSTAKEYVSKVIERLDATNRTQAVLAAQRE 201

Query: 244 NIV 246
            ++
Sbjct: 202 GLL 204


>gi|241663333|ref|YP_002981693.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|240865360|gb|ACS63021.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 219

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-----------ANMFKSYDVHWGKDF 184
            V R  +G  L F    ++ R    ++ L A  +           +N++     H   + 
Sbjct: 83  AVGRHVVGDALRFGAAGVVDRQATADVLLEALQRITSGAVYLPPISNLYPDDPRHTPGES 142

Query: 185 E------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT R+ E L  ++EGK++ +I  +L ++  T+ N++ ++ R+     R+ A  
Sbjct: 143 PAEIWRRLTPRQHEVLQLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVNNRTEAAL 202

Query: 239 Y 239
           +
Sbjct: 203 W 203


>gi|153007788|ref|YP_001369003.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559676|gb|ABS13174.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 213

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    K   L+ RE + L  ++EG ++ EIA+ LGIS  TV  +  +I +K    + +G 
Sbjct: 140 DSGDRKSEGLSVRENDVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGL 199

Query: 237 IAYAVRNNI 245
             Y + N +
Sbjct: 200 TRYVIENRL 208


>gi|148272041|ref|YP_001221602.1| putative transcriptional regulator [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829971|emb|CAN00898.1| putative transcriptional regulator [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 539

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 151 GRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            R + RD+L ++  +L   +A       V       LT RE   +  +++G T  +IA  
Sbjct: 440 DRALARDQLPDVRAVLEGVRAGQVP---VEAAPVDPLTDRERLIVACLADGLTVTQIAAR 496

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L IS NTV +++ S  RK    +RS A+  A    
Sbjct: 497 LFISPNTVKSHVRSAYRKLDATSRSEAVERARALG 531


>gi|52081161|ref|YP_079952.1| two-component response regulator responsible for cold induction of
           the des gene [Bacillus licheniformis ATCC 14580]
 gi|52786544|ref|YP_092373.1| YocG [Bacillus licheniformis ATCC 14580]
 gi|52004372|gb|AAU24314.1| two-component response regulator responsible for cold induction of
           the des gene [Bacillus licheniformis ATCC 14580]
 gi|52349046|gb|AAU41680.1| YocG [Bacillus licheniformis ATCC 14580]
          Length = 199

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI  +    
Sbjct: 137 PLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKG 196


>gi|25010373|ref|NP_734768.1| hypothetical protein gbs0299 [Streptococcus agalactiae NEM316]
 gi|76788230|ref|YP_329033.1| LuxR family transcriptional regulator [Streptococcus agalactiae
           A909]
 gi|77404997|ref|ZP_00782098.1| response regulator [Streptococcus agalactiae H36B]
 gi|23094725|emb|CAD45944.1| unknown [Streptococcus agalactiae NEM316]
 gi|76563287|gb|ABA45871.1| DNA-binding response regulator, LuxR family [Streptococcus
           agalactiae A909]
 gi|77176436|gb|EAO79204.1| response regulator [Streptococcus agalactiae H36B]
          Length = 196

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A
Sbjct: 135 PLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190


>gi|291537551|emb|CBL10663.1| ATP-dependent transcriptional regulator [Roseburia intestinalis
           M50/1]
          Length = 787

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  +    A      +       ELT  E++ L  I   K++ EIA I+ +   TV  ++
Sbjct: 699 MAAVRMQAAFYPHFLESRLAPGEELTPTELQILHLICADKSNAEIAQIMDVKLPTVKTHV 758

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           + I+ K   K R+ A   A +  ++
Sbjct: 759 SHILDKLDVKRRAEARTAAKKLRLI 783


>gi|290955145|ref|YP_003486327.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644671|emb|CBG67756.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 219

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 9/177 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNR 129
             V  + P  ++  + + + D    + +  T    PV      F      +T        
Sbjct: 36  ETVRRERPDVVLLDIRMPDVDGLTVLRELRTMPDAPVVAMLTTFDADEYILTALHSGAAG 95

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +     +  ++   +  L   G ++          L    +    + D    +   LT R
Sbjct: 96  FLLKDTEPDQLAHLVRTLAAGGVVLSPKASRT---LLHSHSGSASAVDEDATRVRLLTSR 152

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  ++EG ++ +I   + +   TV +++++I+ K    +R  A   A R  ++
Sbjct: 153 ERDVLVLVAEGLSNADIGARIHLGAGTVKDHVSAILTKLRVTSRVQAALLAQRAGLL 209


>gi|258655183|ref|YP_003204339.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558408|gb|ACV81350.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 217

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 38/81 (46%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A  Q  + +        D  LT RE E +  I+EG +S  IA  L IS  TV+ + A+++
Sbjct: 135 ALIQDYLRRQRSGERIPDSILTAREEEVVKMIAEGHSSRAIADALVISVKTVDRHRANVL 194

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K     R     +A+R  ++
Sbjct: 195 HKLGLHDRLALTRFAIRAGLI 215


>gi|296141810|ref|YP_003649053.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296029944|gb|ADG80714.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 216

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L +    A     +  +  V       LTG+E   L  + EG T+ +IA  + ++  TV 
Sbjct: 124 LLDSASTARVLQRIRDADRVPSLAQAGLTGQEEAVLELLGEGLTNKQIAERMFLAEKTVR 183

Query: 219 NYIASIMRKTATKTRSGAIAYAVR 242
           N++  ++ K   + R  A   AV+
Sbjct: 184 NHVTGVLAKLGVENRVQAALRAVQ 207


>gi|313832363|gb|EFS70077.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
          Length = 218

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 78  VSSDWPFDL-VRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           V    P D+ +  + + + D       +   P +    +  T   +    A +       
Sbjct: 45  VLRRMPVDVALMDIRMPQMDGVEATRRITASPLDTKVLILTTFDLDEYVYAALKAGASGF 104

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192
               AR    L  +                 L  +      +      K    LT RE E
Sbjct: 105 LLKDARPTELLSAIRNVADGDAVVAPSAPRRLLDHVVPTLPNDPKAADKRLSVLTDREKE 164

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    ++
Sbjct: 165 VLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL 218


>gi|255523094|ref|ZP_05390066.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|255513209|gb|EET89477.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 242

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E   +I  G ++ EI   L IS NTV N++ +I +K   K +   I
Sbjct: 184 LTNREKEIAGYICMGLSNKEIGEKLFISANTVKNHVYNIYKKVNVKNKVELI 235


>gi|121610317|ref|YP_998124.1| regulatory protein LuxR [Verminephrobacter eiseniae EF01-2]
 gi|121554957|gb|ABM59106.1| regulatory protein, LuxR [Verminephrobacter eiseniae EF01-2]
          Length = 913

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++ G  +  +A  L +S  TV +++  I  K   ++R+ A+A      +
Sbjct: 852 LTPRELDVLRMLAMGHRNRVLAEKLFVSEFTVKSHLRRISAKLDAQSRTEAVAIGRARGL 911

Query: 246 V 246
           +
Sbjct: 912 I 912


>gi|1916865|gb|AAB52544.1| response regulator BpdT [Rhodococcus sp. M5]
          Length = 209

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 19/194 (9%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +  I+++   F++V  +A            +P  L   +       +     +     
Sbjct: 15  SGIRRILAATPEFEVVAAVATGNALMRALPGLQPEVLVLDIRLADGSGLELLETIAEVAP 74

Query: 132 S-----LTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQAN--------MFKSY 176
           +     L+   AR  +           + ++ L E  + +L    A              
Sbjct: 75  ATRVVILSMHGARGYVQKARFLGARGYVTKECLDEELVAVLREVMAGDDFVSLRAAAPGV 134

Query: 177 DVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            V   +       L+ RE+E +  ++ G T+ E+A  L +S  TV ++ ASI RK   +T
Sbjct: 135 GVRERRKDTDIDALSARELEVMRMVAAGLTTSEVAERLTVSPRTVESHRASIQRKLHVRT 194

Query: 233 RSGAIAYAVRNNIV 246
           R+     A+   ++
Sbjct: 195 RAEMARIALDEGLL 208


>gi|299133991|ref|ZP_07027184.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
 gi|298590738|gb|EFI50940.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
          Length = 216

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 78/229 (34%), Gaps = 29/229 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R    +  P  S  LA ++  +           ++E VG     LVR        ++ ++
Sbjct: 5   RVVIANRNPLTSQNLADLLHAEGNFEVVASCATISECVG-----LVRARSPDIAIIERLM 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--TLPENITPPAGMD--NRYCSLT 134
           SS           + E+D    V               + P++I+     +   +  ++ 
Sbjct: 60  SS----------KIPEQDILAAVASACFFTRVVFLAASSEPDDISVITSYEWPLKGSTVA 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
             +A+I IG              R            N     +        LT RE E +
Sbjct: 110 RCLAQIVIGHSPANSTPNPTSASR----------HQNKPARVETPGQPLSYLTEREREIM 159

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             ISEG ++ E A  L IS  T+  ++  I  K + K R+  +A A  +
Sbjct: 160 HEISEGISNKEAARRLNISEGTIKLHLHHIYHKLSIKNRAELVAMATTH 208


>gi|167763457|ref|ZP_02435584.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC
           43183]
 gi|167698751|gb|EDS15330.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC
           43183]
          Length = 217

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             +A M +S +   G+  ELT RE++ L  ISEGK + EIA  L +S NTV+ +   +M 
Sbjct: 136 HVRAQMRRSDE---GRREELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHLMD 192

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   +  +  I  A+   I+
Sbjct: 193 KLDARNVADLIMTAISKGII 212


>gi|269959807|ref|ZP_06174185.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3]
 gi|269835420|gb|EEZ89501.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3]
          Length = 204

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 12/131 (9%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEI--------GLLAA 167
                G + R   LT   +   I  ++       +L     D L E+           + 
Sbjct: 64  ALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVELLKQAHEGDKAYSQ 123

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A      +        LT RE + L  ++ G  + +IA  L IS +TV  ++ S+++K
Sbjct: 124 AVAKYLNEREGQEDVFDTLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKK 183

Query: 228 TATKTRSGAIA 238
               +R+ A  
Sbjct: 184 LKVPSRTAATV 194


>gi|229818835|ref|YP_002880361.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564748|gb|ACQ78599.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 220

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 6/135 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L               +L   V R+  G   L P+    + D       +A   A 
Sbjct: 92  VFAALRAGAAGFLLKTTDAPALLDAVRRVAAGEGALAPEVTRRVLDA------VARGPAP 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        ELT RE + L  +  G ++  IA  L I+  T   +++ ++ K    
Sbjct: 146 GGSDDPAVPHGLAELTDRERDVLACLGRGLSNAGIARELVITEATAKTHVSRVLAKLGCS 205

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A   A    +V
Sbjct: 206 SRVQAALLAREAGVV 220


>gi|239989357|ref|ZP_04710021.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446370|ref|ZP_06585760.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349317|gb|EFE76221.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 229

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 13/188 (6%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITP 122
            +    ++  ++V    P  ++  + +   D       + + PT +   +  T  ++   
Sbjct: 42  AEAADGREAIALVRQHRPDVVLLDIQMPGLDGLTAVARLHREPTPVGVIMLTTFGQDAYV 101

Query: 123 PAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
              ++   + +     D   +  G+  +   G  +         +     A M      H
Sbjct: 102 TRALEEGADGFLLKADDPRELLNGVRAVGAGGAYLSP------RVAGRVIAGMRAHRAAH 155

Query: 180 WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +  E LTGRE E L  I  G ++ EIA  L +   TV  ++++++ K   + R  A  
Sbjct: 156 PHRPLERLTGREREVLAGIGTGLSNAEIAGRLHLVEGTVKAHVSAVLAKLGVRNRVEAAI 215

Query: 239 YAVRNNIV 246
            A    ++
Sbjct: 216 AAHEAGLL 223


>gi|307328810|ref|ZP_07607980.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306885475|gb|EFN16491.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 214

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 10/176 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP--VFHTLPENITPPAGMDNRYCSL 133
            +V+   P  ++  + +        V +R   L  P  V      ++        ++ + 
Sbjct: 42  DLVAEHRPDVVLTDIQMPRVGG-LEVARRLAALPDPPAVAALTTFDVDEYVYAALQHGAA 100

Query: 134 TF----DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
            F       R     + +  +G  +L  R+    LLAA+             +  ELT R
Sbjct: 101 GFLLKDTSPRELADAVRVLARGEAMLSPRIT-TKLLAAFATGAVAP--QARSRMAELTAR 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E E    +++G ++ +IA  L +S++TV  +++ IM K     R+          +
Sbjct: 158 EREVAVAVAQGHSNSQIATDLFVSQSTVKVHLSRIMTKLDAANRTQVALITHDAGL 213


>gi|156741914|ref|YP_001432043.1| ATP-dependent transcription regulator LuxR [Roseiflexus
           castenholzii DSM 13941]
 gi|156233242|gb|ABU58025.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Roseiflexus castenholzii DSM 13941]
          Length = 880

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELT 187
           R  ++      +RI L       R++ R      G LL A+ +++             LT
Sbjct: 759 RALAMAEPEGYVRIFLDAGARLARLLHRIGSAYAGRLLEAFPSSVRARVANLTESPEPLT 818

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  ++ G T  +IA  L +S NTV  +I S+  K    +R+ A+A A   ++
Sbjct: 819 DRERDVLRLMARGLTYRQIASELVVSVNTVRYHIKSLYSKLQVNSRTLALARAHELHL 876


>gi|29830918|ref|NP_825552.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608031|dbj|BAC72087.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 219

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +    +     D R   L   V  +  G  LL P     + +RL E G         
Sbjct: 96  FDAIMAGASGYVLKDIRGSELLAAVRDVAAGKSLLDPVATARVLERLREGG--------- 146

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D        LT +E   L  I EG T+ EI   L ++  T+ NY++S++ K   + 
Sbjct: 147 GPKEDDRLA---HLTDQERRILDLIGEGLTNREIGERLHLAEKTIKNYVSSLLSKLGMQR 203

Query: 233 RSGAIAYAVR 242
           RS A AY  R
Sbjct: 204 RSQAAAYVAR 213


>gi|284035632|ref|YP_003385562.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283814925|gb|ADB36763.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 218

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 9/175 (5%)

Query: 79  SSDWPFDLVRCMALSEKDK--YYNVLQRP---TELFCPVFHTLPENITPPAGMDN-RYCS 132
            S  P  ++  ++L          V+ R      +     H   + I          Y  
Sbjct: 46  PSLLPDLILMDISLPGMSGIQTTQVISRLYKNVRVLMLSMHNNEDYILRSVEAGAYGYIL 105

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREV 191
                  +   +  +    +           +L+ Y   + K        +  +L+ +E 
Sbjct: 106 KDSSSDEMIKAIRTIASGEKYYSSP--VASIILSGYMQQLKKGDRHGRAERQSKLSNKEK 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L ++ +G +S EIA  L +S  TV+N+ A++MR+   +  +  +  AV + ++
Sbjct: 164 EILQFLVDGMSSREIAEKLQLSVRTVDNHRANMMRRLQVRNAAELVRMAVEDKLI 218


>gi|163734137|ref|ZP_02141578.1| Transcriptional activator protein RaiR, putative [Roseobacter
           litoralis Och 149]
 gi|161392673|gb|EDQ17001.1| Transcriptional activator protein RaiR, putative [Roseobacter
           litoralis Och 149]
          Length = 154

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 160 WEIGLLAAY--QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            E+ L+A Y  Q  +    +    +   L+ REV+ +T ++ G +  ++A  L IS +T+
Sbjct: 64  RELILIAHYFNQKALEFEPNKTPEQSQSLSPREVDAMTLLAIGYSRAQVAETLSISEHTL 123

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             YI S   K      + A+A A+   ++
Sbjct: 124 RVYIESARFKLGAANTTHAVARALSRGLI 152


>gi|148242084|ref|YP_001227241.1| HTH DNA-binding domain-containing protein [Synechococcus sp.
           RCC307]
 gi|147850394|emb|CAK27888.1| HTH DNA-binding domain protein [Synechococcus sp. RCC307]
          Length = 75

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE E L  + +G T+ +I   L I+ +T   ++ +IM+K   + R+ A A  +R
Sbjct: 11  PLQLTRRECEVLQLLCDGLTNQQIGQRLHIAGSTARGHVQTIMQKLDVQGRTAAAAEGIR 70

Query: 243 NNI 245
             +
Sbjct: 71  RQL 73


>gi|30019876|ref|NP_831507.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228920546|ref|ZP_04083891.1| Response regulator [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228952218|ref|ZP_04114309.1| Response regulator [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229043592|ref|ZP_04191301.1| Response regulator [Bacillus cereus AH676]
 gi|229109295|ref|ZP_04238894.1| Response regulator [Bacillus cereus Rock1-15]
 gi|229127162|ref|ZP_04256159.1| Response regulator [Bacillus cereus BDRD-Cer4]
 gi|229144451|ref|ZP_04272856.1| Response regulator [Bacillus cereus BDRD-ST24]
 gi|229150040|ref|ZP_04278265.1| Response regulator [Bacillus cereus m1550]
 gi|296502434|ref|YP_003664134.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29895421|gb|AAP08708.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228633478|gb|EEK90082.1| Response regulator [Bacillus cereus m1550]
 gi|228639082|gb|EEK95507.1| Response regulator [Bacillus cereus BDRD-ST24]
 gi|228656278|gb|EEL12119.1| Response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674305|gb|EEL29550.1| Response regulator [Bacillus cereus Rock1-15]
 gi|228725814|gb|EEL77062.1| Response regulator [Bacillus cereus AH676]
 gi|228807489|gb|EEM54017.1| Response regulator [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228839176|gb|EEM84472.1| Response regulator [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|296323486|gb|ADH06414.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 212

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I       +N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|56476411|ref|YP_158000.1| LuxR family transcriptional regulator [Aromatoleum aromaticum EbN1]
 gi|56312454|emb|CAI07099.1| putative LuxR-family transcriptional regulator [Aromatoleum
           aromaticum EbN1]
          Length = 207

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            L+ RE E     + G ++ EIA  LGI+  TV  ++ +I  K   + R   +
Sbjct: 142 NLSARESEVARETAAGLSNKEIASKLGITERTVKAHLGAIFDKLGVRDRLQLV 194


>gi|33591312|ref|NP_878956.1| transcriptional regulator [Bordetella pertussis Tohama I]
 gi|33598581|ref|NP_886224.1| transcriptional regulator [Bordetella parapertussis 12822]
 gi|33603531|ref|NP_891091.1| transcriptional regulator [Bordetella bronchiseptica RB50]
 gi|33570954|emb|CAE40423.1| transcriptional regulator [Bordetella pertussis Tohama I]
 gi|33574710|emb|CAE39367.1| transcriptional regulator [Bordetella parapertussis]
 gi|33577655|emb|CAE34920.1| transcriptional regulator [Bordetella bronchiseptica RB50]
 gi|332380714|gb|AEE65561.1| transcriptional regulator [Bordetella pertussis CS]
          Length = 78

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           LT RE++CL W + GKTS E A ILGI+  TV+ ++A+   K  
Sbjct: 7   LTPRELDCLHWSALGKTSWETARILGIAARTVDFHLANACAKLG 50


>gi|331700028|ref|YP_004336267.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954717|gb|AEA28414.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 355

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 58/180 (32%), Gaps = 10/180 (5%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
            +  ++      Q   LD +       +   C+A        +V      L  P      
Sbjct: 170 FTSLMIPGATPEQMAWLDDLQKMATSAE--NCVAARRARYDVDVRPLLPGLDLPTLVIQS 227

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL---AAYQANMFK 174
                    D R  + +   AR    L+ L  +  I+L D       L     + A    
Sbjct: 228 RGDRLTDFADARELAASIPGAR----LVALESENHILLADEPAWPIFLREVTDFVAPAPA 283

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             DV       LT RE + L   + G  +D IA  L +S  TV  ++ ++  K     RS
Sbjct: 284 RPDVAEAVRT-LTARERDVLRLAAAGNDNDAIAAALSLSPRTVERHLQNVYLKLGVSGRS 342


>gi|239816996|ref|YP_002945906.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803573|gb|ACS20640.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 200

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 42/78 (53%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A   ++ +     + +L+ R+ + +  + +G ++ +IA  L IS +TV  ++  + R+ 
Sbjct: 120 MAGSEEADEPALASNSKLSKRQTQLIAMLDKGMSNRDIATDLEISEHTVKVHLWRLFRRL 179

Query: 229 ATKTRSGAIAYAVRNNIV 246
             K+R+ A+ YA  N ++
Sbjct: 180 GVKSRTQALHYARTNGLL 197


>gi|58803058|gb|AAW82657.1| response regulator [Myxococcus xanthus DK 1622]
          Length = 220

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +      G+   LT RE E L +I+ G  +  IA  LGI+  TV  +I +I +K  ++ R
Sbjct: 143 RPEASPRGELGRLTPREREVLGYIAAGADNLRIAACLGITDRTVKAHITAIYKKVGSENR 202

Query: 234 SGAIAYAVRNNI 245
           +       +  +
Sbjct: 203 TQLAVLGCQLGV 214


>gi|326774074|ref|ZP_08233356.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326636213|gb|EGE37117.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 226

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           P  L+  + +   D      +   E     +      +  E I     M  R   +  DV
Sbjct: 47  PDILLMDIQMPGGDGLSAAERILAEDAGARIVFLTTFSDDEYIVRALKMGARGYLIKQDV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEI----------GLLAAYQANMFKSYDVHWGKDFELT 187
           A++   L  +     ++  + L             G   A +     + D+       LT
Sbjct: 107 AQVAPALRSVMAGVCVLEGEVLERSTTMGLGGPAGGREQAEEGPGASAKDLRSTAFAALT 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE E +  ++EG  + E A  L +S  TV N+I++I+ K   + R+       R
Sbjct: 167 DREYEVVEAVAEGLDNAEAAARLFMSEGTVRNHISAILAKLGLRNRTQVAVMYYR 221


>gi|325674922|ref|ZP_08154609.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325554508|gb|EGD24183.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 359

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 66/239 (27%), Gaps = 18/239 (7%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSW------TMRMYALTEYVGASHFLLVRW-- 66
                 +F +  P R D L                  T  +  +  + G    +L     
Sbjct: 114 GAPVSIAFAALFPQRVDRLILYGGYADGSDVAAPGVRTAVLGMIRAHWGLGSEMLADIFI 173

Query: 67  ---DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              D         +     P +L   +     +     L         V H   +   P 
Sbjct: 174 PDADAATRALFTRLQKEAAPAELAADLLAQCYEIDVTDLLDRVGAPTLVVHRRGDRAIPY 233

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                R  +     AR+ I L        +     +    L            +      
Sbjct: 234 RA--GRALAARIPGARL-ISLPGRSHFPHVGDAAAVVHAMLEFLGHGTTAPPPE----PP 286

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             LT R+++    ++EG T+ +IA  LGI   +   ++  I  +    +R+   A+  R
Sbjct: 287 DALTARQLQVAALVAEGMTNRQIAQRLGIEERSAEGHVERIRLRLGVSSRAQVAAWWAR 345


>gi|271965253|ref|YP_003339449.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270508428|gb|ACZ86706.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 937

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---------LTGREVECLTWI 197
                   L +R   +G             D+                L+ RE E    +
Sbjct: 835 HATSALAELAERFGALGATHDAARCRRALRDIGAESPLPRGRKGTAGALSQREREVARLV 894

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + G+T+ EIA +L +S  TV  ++A+++RK   ++R+   
Sbjct: 895 ALGRTNREIADVLFLSTRTVETHVATVLRKLGVRSRTEVA 934


>gi|256824283|ref|YP_003148243.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687676|gb|ACV05478.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 223

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 10/151 (6%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPP-AGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           +    L   T +     H   +++        + Y         +R G+        ++ 
Sbjct: 81  QDLRGLGVATPMLVLTAHDDGDDVLQAVEAGASGYLLKDAPPTSLRDGVARAAAGETVLA 140

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                   L+   +A   ++          +T RE++ L  ++ G+T+ ++A  LGI   
Sbjct: 141 PAA--AAHLVTGARATTAEAAP-------RVTDRELQVLRGVARGQTNRQVARELGIGEA 191

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  ++  +        R+ A+  A    ++
Sbjct: 192 TVKTHLVHVFTTLGVTNRTAAVGRARELGLL 222


>gi|256374257|ref|YP_003097917.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255918560|gb|ACU34071.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 209

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 15/126 (11%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             +       R   L   V  +  G  LL P     + +R+ +                 
Sbjct: 98  GASGYLLKQVRGQDLVHAVREVAAGRSLLDPVTTSRVLERMRKP---------------Q 142

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   LT +E   L+ I EG ++ +IA  L ++  TV N++ +++ K   + R+ A A
Sbjct: 143 EPDELATLTEQERRVLSLIGEGLSNRQIAERLFVAEKTVKNHVTAVLSKLGMERRTQAAA 202

Query: 239 YAVRNN 244
           +  R  
Sbjct: 203 WVARRG 208


>gi|163842188|ref|YP_001626593.1| two component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162955664|gb|ABY25179.1| two component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 225

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 9/147 (6%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLMLLFPK 150
           L        +L +  E+   +  T  ++ +  A +     S LT D  R RI   +    
Sbjct: 78  LDGVGTTKELLSQYPEMAIIILTTYQDDASISAALAAGARSYLTKDAGRDRILAAIRSTA 137

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                    +++ +     + +  S         ELT RE E L  I+ G+ + EIA   
Sbjct: 138 SG----QATFDVAVARRLISGLKPSKPS----FPELTERESEILALIAAGRNNQEIAQES 189

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAI 237
            +S  TV  +I +I  K   + R+ AI
Sbjct: 190 FVSVATVKTHINNIFAKLQLRDRAQAI 216


>gi|3868876|dbj|BAA34262.1| response regulator [Rhodococcus erythropolis]
          Length = 209

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 19/194 (9%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +  I+++   F++V  +A            +P  L   +       +     +     
Sbjct: 15  SGIRRILAATPEFEVVAAVATGNALMRALPGLQPEVLVLDIRLADGSGLELLETIAEVAP 74

Query: 132 S-----LTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQAN--------MFKSY 176
           +     L+   AR  +           + ++ L E  + +L    A              
Sbjct: 75  ATRVVILSMHGARGYVQKARFLGARGYVTKECLDEELVAVLREVMAGDDFVSLRAAAPGV 134

Query: 177 DVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            V   +       L+ RE+E +  ++ G T+ E+A  L +S  TV ++ ASI RK   +T
Sbjct: 135 GVRERRKDTDIDALSARELEVMRMVAAGLTTSEVAERLTVSPRTVESHRASIQRKLHVRT 194

Query: 233 RSGAIAYAVRNNIV 246
           R+     A+   ++
Sbjct: 195 RAEMARIALDEGLL 208


>gi|299069943|emb|CBJ41227.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CMR15]
          Length = 252

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 21/186 (11%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP---ENITPP------- 123
           +D +V+ D+P + +  +  +       +++R      PV+       E   P        
Sbjct: 53  MDYVVTVDYPNEHLLAIRNTAGGLDTPIMRRWLATRRPVYFDAAAPWEGTDPAWLEKFVK 112

Query: 124 AGMDNRYCSLTFDVAR---IRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKS 175
            G+ N      FD             L       L   L ++     G L    AN+   
Sbjct: 113 HGLRNCAADAVFDEVNCVGTYYSFHALPSVEPGCLDAMLRDLTPVMHGALLRAVANVESD 172

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE E    I +GK++ EIA ++  S NTV +Y++SIM KT  + R  
Sbjct: 173 QQKASEALATLSEREREVALLIGQGKSNAEIAQLVCKSENTVKHYLSSIMDKTGCENR-- 230

Query: 236 AIAYAV 241
            +  A+
Sbjct: 231 -VRVAM 235


>gi|254463119|ref|ZP_05076535.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium HTCC2083]
 gi|206679708|gb|EDZ44195.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 201

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 70/190 (36%), Gaps = 20/190 (10%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPV--FHTLP 117
           +  +   Q+   +++  +  P  ++  + +   +       +L+   E    V   H  P
Sbjct: 19  VATYSSGQDIIDNAVALA--PDVILLDLNMPGMNGLTTIELLLEAREETRILVLSMHDNP 76

Query: 118 ENITPPAG-MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           E IT         Y         I+  +  +    R           +    + ++    
Sbjct: 77  EYITTALSHGAMGYVLKDVPTEEIKTAIDTVMTGQRY----------MCTGAKGSLVP-- 124

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LTGRE   L  +++G+++ E+A  L IS  TV  +  +I RK    + +G 
Sbjct: 125 EEGEEIRDALTGREQTVLLQLAKGQSNKEVAAALNISVRTVETHRKNIKRKLGISSTAGL 184

Query: 237 IAYAVRNNIV 246
             YA+ + ++
Sbjct: 185 TRYAMEHGVL 194


>gi|298483146|ref|ZP_07001326.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. D22]
 gi|298270663|gb|EFI12244.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. D22]
          Length = 200

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
             +   L  D  + ++  + +              + L      N +   D+      + 
Sbjct: 71  KRKTIVLASDSPQFQLSGVPVLNIHESEEELVKNILKLHQHAHHNGYPVKDMPSMPPTQP 130

Query: 186 ----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV
Sbjct: 131 HQEILSSREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAV 190

Query: 242 RNNIV 246
            N  +
Sbjct: 191 MNGYI 195


>gi|260655833|ref|ZP_05861302.1| response regulator GacA [Jonquetella anthropi E3_33 E1]
 gi|260629449|gb|EEX47643.1| response regulator GacA [Jonquetella anthropi E3_33 E1]
          Length = 217

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 147 LFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           L    R +   RL+  G    LL      + ++      +   L+ RE   L  +++G T
Sbjct: 111 LLTAVRTVAEGRLYLAGGVVQLLVEDYLRLKRAVHDGPARSMVLSEREKSVLALMAQGLT 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  I   LGIS+NTV+ +   +M K    + +  + +A R  ++
Sbjct: 171 SKAIGDELGISKNTVDTHRRRMMDKLGCNSVAELLRHAYREELL 214


>gi|229069389|ref|ZP_04202679.1| Response regulator [Bacillus cereus F65185]
 gi|228713876|gb|EEL65761.1| Response regulator [Bacillus cereus F65185]
          Length = 212

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++  G+ 
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVY-NGQT 123

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +++D +     L   ++N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 124 VMQDVI-----LDKIKSNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|153807885|ref|ZP_01960553.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185]
 gi|149129494|gb|EDM20708.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185]
          Length = 219

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+
Sbjct: 148 EDHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAM 207

Query: 242 RNNIV 246
           R  IV
Sbjct: 208 RAGIV 212


>gi|111020359|ref|YP_703331.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110819889|gb|ABG95173.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1079

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 30/77 (38%)

Query: 163  GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
              +A              G     T RE E    I+EG T+ EIA  L IS  T   ++ 
Sbjct: 995  AAVAYALGEQVSPSPTSAGPSPTPTKREREVAALIAEGLTNKEIAARLVISPRTAQGHVE 1054

Query: 223  SIMRKTATKTRSGAIAY 239
             ++ K    +R+   A+
Sbjct: 1055 HLLTKLGFNSRAQIAAW 1071


>gi|111023556|ref|YP_706528.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110823086|gb|ABG98370.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 288

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 155 LRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           L+ RL  +   LA        S D   G    LT RE++ L+ ++ G T+ E A  L + 
Sbjct: 197 LQARLRGLSQRLAGILRPDADSADEDPG--VHLTPREIDVLSHVALGCTNSEAAQRLSVG 254

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV +Y+ S M K   ++R  A+  A R  ++
Sbjct: 255 PETVKSYLRSAMSKLDARSRHEAVVTARRLGLL 287


>gi|94970529|ref|YP_592577.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552579|gb|ABF42503.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 228

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S       DF LT RE+E +  ++EG  + EIA  L IS  TV  ++  I  K    TR 
Sbjct: 154 SRTEAPRNDFGLTPRELEIVALVTEGCGNREIATRLTISEETVKRHLTHIFDKVGMSTRL 213

Query: 235 GAIAYAVRNNI 245
               +A+ +N+
Sbjct: 214 ELALFALDHNL 224


>gi|284043606|ref|YP_003393946.1| GAF modulated LuxR family transcriptional regulator [Conexibacter
           woesei DSM 14684]
 gi|283947827|gb|ADB50571.1| GAF modulated transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 277

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++   R  E    A   A+   S +V       L+ RE++    + +G T+ EI  
Sbjct: 184 RGPSVVETIRFSEAQRAAVRMAHRNVSAEVRDA----LSARELQVFELLVDGLTNAEIGH 239

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LGI+ NTV  ++  I  K   ++R  A+  
Sbjct: 240 ELGIALNTVKQHVRHIYEKLGARSRVEAVRM 270


>gi|254424904|ref|ZP_05038622.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
 gi|196192393|gb|EDX87357.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
          Length = 216

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G  +  +A  L IS  TV  ++  I +K     R+ A+  A++  ++
Sbjct: 159 VLNLLAFGSGNASLAKALHISEGTVKFHVNHIFQKLGVHDRTQAVIVALKRGLI 212


>gi|145226775|gb|ABP48141.1| putative two-component system response regulator [Rhodococcus sp.
           DK17]
          Length = 215

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 3/156 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR    +  +    +L R   L C +  +  ++    A +D      +  V +   G+ L
Sbjct: 55  VRLPDGNGIELCRELLSRMPGLHCLMLTSYTDD---QAMLDAILAGASGYVVKDIRGMEL 111

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +     L +    AA  A +        G    LT ++   L  + EG T+ +I
Sbjct: 112 TEAVHEVGAGKSLLDSRAAAALMAKLHSDAHAEDGPFAGLTDQQRTLLALLGEGLTNRQI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           A  + ++  TV NY++ ++ K   + R+ A   A +
Sbjct: 172 AERMFLAEKTVKNYVSRLLTKLGVERRTQAAVLATK 207


>gi|120402926|ref|YP_952755.1| regulatory protein LuxR [Mycobacterium vanbaalenii PYR-1]
 gi|119955744|gb|ABM12749.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 862

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 10/144 (6%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQAN 171
           +  L +     A       S  +D A   +         R +   DRL    +    +A+
Sbjct: 718 YALLSDGCHEAAAAAFHRLSTPYDAALALVESGEPAAVRRALDALDRLGADAVANKVRAD 777

Query: 172 MF---------KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           +                      LT R+VE L  + +G T+ E+A  L +S  TV+++++
Sbjct: 778 LRATGATAVPGPRRASTLSNPAGLTVRQVEVLRLLGDGLTNAELAERLFLSVKTVDHHVS 837

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I+ K     R  A+  A    I+
Sbjct: 838 AILTKLDVTKRRDAVRRAREVGIL 861


>gi|91975316|ref|YP_567975.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91681772|gb|ABE38074.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 224

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +    F V ++   ++ +      +  D   ++   A  + +  +       +   L
Sbjct: 104 ASGFVPKRFGVEKLGEAILQVLDGDVWVPPD--VDLSAAADPETSKLR------DRLVTL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 156 TPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|94313776|ref|YP_586985.1| putative two component LuxR family transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93357628|gb|ABF11716.1| putative two component transcriptional regulator, LuxR family
           [Cupriavidus metallidurans CH34]
          Length = 211

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +       K  +LT R++E L  ++ G+++  IA  LG+S NTV  ++A+I+      +R
Sbjct: 135 RLPHTRAYKPSQLTPRQLEVLNQLNLGRSNKVIAYHLGLSENTVRVHVAAILDHLGVVSR 194

Query: 234 SGAIAYAVRNNIV 246
             AI  A R  +V
Sbjct: 195 VEAILEAQRRGLV 207


>gi|331699431|ref|YP_004335670.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954120|gb|AEA27817.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 215

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 16/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L E        D+R   +   V  +  G  ++ P+              LAA  A 
Sbjct: 96  VFQALQEGAAGYLAKDSRRAEIVAAVLDVAKGRTVVPPE--------------LAAGLAG 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +      G    L+ RE E L   + G +  ++A  L I  +TV  ++  +  K    
Sbjct: 142 EIRMRAQTTGP--ALSEREREVLQAFARGLSVPQVAGELFIGVSTVKTHVQRLYEKLGVS 199

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+A  +R  +V
Sbjct: 200 DRAAAVAEGMRRGLV 214


>gi|308172085|ref|YP_003918790.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307604949|emb|CBI41320.1| two-component response regulator RBAM_002490 [Bacillus
           amyloliquefaciens DSM 7]
 gi|328910154|gb|AEB61750.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens
           LL3]
          Length = 214

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           +R   +   +    V  R   +   +  T  +     AG+    + Y     D   I   
Sbjct: 54  IRMPGMDGIEATKAVKDRYPSVKVIILTTFEDGHYIFAGLKSGADGYILKDADSDEIVAS 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     ++      ++     +        +        LT RE++    I EGK++
Sbjct: 114 LKAVCEGNMMLNPKVTVQVVKALNHMDIPAVQEEPKSNLTEILTPRELDVAKHIMEGKSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             IA  L ++  TV NY++ I+ K     R+    Y
Sbjct: 174 KRIAADLFLTEGTVKNYVSRILDKLEVTNRTELTLY 209


>gi|300855506|ref|YP_003780490.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435621|gb|ADK15388.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 824

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L+  ++G    ++A  LGIS +T   ++ +I +K     +  A+  A   
Sbjct: 762 INLSQRELEVLSLTAKGLKRTQVACKLGISESTAKTHLQNIYKKLQVSGKFEAVKIARMY 821

Query: 244 NIV 246
            I+
Sbjct: 822 GII 824


>gi|120402369|ref|YP_952198.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955187|gb|ABM12192.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 220

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 12/177 (6%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DN 128
           +    IV  D     VR    S  D    + +R  +    +     +       +    +
Sbjct: 51  ELDPDIVLCD-----VRMQGSSGLDVCQQLRERDPDRKVVMLSVYDDEQYLFQALRVGAS 105

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   +     +   L  +      I       +   AA  A   +  +   G    LT 
Sbjct: 106 GYLLKSISSEELVKQLESVHGGQTAIDPS----MAARAADTAARMQRDEFWPGARRGLTQ 161

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L  +  G ++  IA  L I   TV  +++SI RK     R+ A A A+R  I
Sbjct: 162 RESEILALVVNGLSNRAIAAKLIIGDETVKTHLSSIYRKLGVSDRTAAAATALREGI 218


>gi|119774583|ref|YP_927323.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767083|gb|ABL99653.1| transcriptional regulator, LuxR family [Shewanella amazonensis
           SB2B]
          Length = 210

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 25/201 (12%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS---EKDKYYNVLQRPTELFCPVFHTL 116
           H+++V         L  ++   WP + +  +  +   E     ++ Q    +       L
Sbjct: 6   HWMVVSRSH----LLGDLLDCRWPQEFLVKLTKAAPEEMCNKLHLSQVSLVVIDLASVDL 61

Query: 117 PENITPPAGMDNRYCSLT-------------FDVARIRIGLMLLFPKGRIILRDRLWEI- 162
            +       ++  Y S+              F V +     +  F      + + L EI 
Sbjct: 62  QKAYQLQKHIEREYSSIKVVFIHFPRQTDARFLVNQSVTAGVFFFDASLADIGEGLGEIL 121

Query: 163 ---GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
                + A         D     + +LT RE E L  +  G T+ +IA  L +S +T+  
Sbjct: 122 KGRSQIPAQLLRSSNGEDYEEDSE-KLTIREREVLQALLSGSTNLDIANRLFVSESTIKT 180

Query: 220 YIASIMRKTATKTRSGAIAYA 240
           ++    RK    +R  AIA+A
Sbjct: 181 HLYRAFRKIGVSSRGQAIAWA 201


>gi|229819242|ref|YP_002880768.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Beutenbergia cavernae DSM 12333]
 gi|229565155|gb|ACQ79006.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Beutenbergia cavernae DSM 12333]
          Length = 895

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 39/103 (37%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  L P    ++         L             H    +ELT RE+E L  +    T+
Sbjct: 791 LPDLRPYLEALVHAGTDHRDFLTGLLGTPAADGAPHRRSHWELTDRELEILDGLRSSLTA 850

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S NTV  +  ++ RK   + R  A+  A     +
Sbjct: 851 AEIARSLFVSVNTVKTHQRAVYRKLGARNRREAVRLAASRGFL 893


>gi|223936168|ref|ZP_03628081.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895030|gb|EEF61478.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V                    L   +  +  G           LRD+L            
Sbjct: 92  VQKLTEAGAAGYVIKQTAANDLVTAIREVHKGNAFYSAAISQRLRDQL----------HA 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F++          LT RE E L  I++G+ + ++A  LGIS  T+  +   +M K    
Sbjct: 142 RFRNGKSVRNSLTLLTPREAEVLVLIAKGQPNKQMASELGISIKTIEKHRQQVMNKLNIH 201

Query: 232 TRSGAIAYAVRNNIV 246
             +G   YA+   I+
Sbjct: 202 DIAGLTRYAISKGII 216


>gi|148990003|ref|ZP_01821278.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|182684936|ref|YP_001836683.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|225855491|ref|YP_002737003.1| response regulator [Streptococcus pneumoniae JJA]
 gi|303254075|ref|ZP_07340190.1| DNA-binding response regulator [Streptococcus pneumoniae BS455]
 gi|303260376|ref|ZP_07346346.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262524|ref|ZP_07348466.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265155|ref|ZP_07351068.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|303265983|ref|ZP_07351878.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|303268085|ref|ZP_07353886.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|147924663|gb|EDK75749.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|182630270|gb|ACB91218.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|225723110|gb|ACO18963.1| response regulator [Streptococcus pneumoniae JJA]
 gi|301802678|emb|CBW35444.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598908|gb|EFL65939.1| DNA-binding response regulator [Streptococcus pneumoniae BS455]
 gi|302636424|gb|EFL66917.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638542|gb|EFL69007.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302642445|gb|EFL72791.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|302644424|gb|EFL74676.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|302645372|gb|EFL75606.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
          Length = 199

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V   +   LT +E+  L  I+ G ++ EIA  L +S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|77413329|ref|ZP_00789524.1| response regulator [Streptococcus agalactiae 515]
 gi|77160643|gb|EAO71759.1| response regulator [Streptococcus agalactiae 515]
 gi|319744307|gb|EFV96671.1| LuxR family DNA-binding response regulator [Streptococcus
           agalactiae ATCC 13813]
          Length = 196

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A
Sbjct: 135 PLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIA 190


>gi|326384064|ref|ZP_08205747.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326197224|gb|EGD54415.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 288

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           AN              LT RE + L+ +  G T+  IA  LGI  +TV  ++ +++ K  
Sbjct: 211 ANQLAGDAPEPELTVRLTAREQDVLSLLGAGLTNPAIAERLGIGLHTVKGHVKALLVKLD 270

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A R  ++
Sbjct: 271 ASSRFEAVVNARRVRLI 287


>gi|298488407|ref|ZP_07006438.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157032|gb|EFH98121.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 209

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D+  G    LT R+ E L  ++ GKT+ EIA  LGIS  TV  +++S+++     TRS 
Sbjct: 137 SDLDSGAISHLTVRQREVLGLVASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRSA 196

Query: 236 AIA 238
             A
Sbjct: 197 VAA 199


>gi|290955558|ref|YP_003486740.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260645084|emb|CBG68170.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 970

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E    +++G TS  IA  L +SR TV  +++   RKT   +R+   A   R  
Sbjct: 900 LTARELEIAELVAQGLTSQAIADRLFVSRRTVETHVSRTFRKTGVSSRTALAALMARRR 958


>gi|269125732|ref|YP_003299102.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268310690|gb|ACY97064.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 952

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             D   +R     L   G +   DRL ++   A       +      G    L+ RE E 
Sbjct: 829 AVDAELLRRTWRTLTELGELRDADRLKQLMRTAGLPVPHRRG---RPGYGDRLSPREQEI 885

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               + G+T+ +IA  L ++  TV  ++A+ MRK     R   
Sbjct: 886 AALAASGRTNGDIAAALCLAERTVKYHLANAMRKLQVSNRRQL 928


>gi|149278558|ref|ZP_01884694.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149230553|gb|EDM35936.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 214

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 14/185 (7%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP--- 122
            DL  +     I+  D    ++  +AL        +++    L   +F ++ +N      
Sbjct: 40  LDLLDDGLSADILLLDMNMPVMDGIAL------LPIVREKYPLLKVIFLSMLDNPEVVFN 93

Query: 123 -PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + Y     +   +   +  +   GR +  +   +  +L    +        H  
Sbjct: 94  TIKKGASAYLFKNVNAMELLFAVKYVHDGGRYLCSE--IQFKMLEQKSSERVNPASNHNA 151

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D   T RE+E L  I+ G T+ EIA  L +S+ TV  +   ++ KT ++  +  I  A 
Sbjct: 152 DD--FTQREMEILQLIALGHTNSEIADKLFLSKRTVEGHRQLLLNKTQSRNSAHLIKTAT 209

Query: 242 RNNIV 246
              +V
Sbjct: 210 VMGLV 214


>gi|167646051|ref|YP_001683714.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167348481|gb|ABZ71216.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 77

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+EC+   + G T+ E A  + ++  TV  ++ + MRK     +  A+  A++  +
Sbjct: 15  LTAREIECIRLAALGLTTGETAQRIQVAERTVEFHLGNAMRKLGATNKLRAVVIAMQRKL 74

Query: 246 V 246
           +
Sbjct: 75  I 75


>gi|313110726|ref|ZP_07796587.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310883089|gb|EFQ41683.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 213

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +P+   L AR+I  D    +   +  +         +       +  +L S VS + P  
Sbjct: 1   MPSTRSLPARVIVADDYPLFRDGLRRVVRRYLPQAAVSEAGSFDEVLRLASSVSPEPPAL 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-------NRYCSLTFDVA 138
            V  + L         ++R    +      +   +  P  +D       + Y   + +  
Sbjct: 61  FVLDLLLPG-FAASQSIERLRRAYRHSAIVIVSMLDDPRLVDEVLAAGADGYLGKSLEAG 119

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   L  L     ++   RL       + Q  +  +          LT RE   L  I+
Sbjct: 120 EIGTALQTLGSGEPVV---RLRGGSSAGSRQRALLDA----------LTPREQAVLRLIA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +G ++ EI   L IS  TV  +++S++R     TR+
Sbjct: 167 DGLSNKEIGRALSISPFTVRVHVSSLLRALEVNTRT 202


>gi|41406787|ref|NP_959623.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254773764|ref|ZP_05215280.1| NarL_1 [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41395137|gb|AAS03006.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 217

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  +
Sbjct: 156 LSAREREVLHRIARGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGL 215

Query: 246 V 246
           +
Sbjct: 216 L 216


>gi|299134073|ref|ZP_07027266.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
 gi|298590820|gb|EFI51022.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
          Length = 225

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  
Sbjct: 150 RDRLITLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIV 209

Query: 240 AVR 242
           A +
Sbjct: 210 AAK 212


>gi|239942897|ref|ZP_04694834.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 224

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 13/188 (6%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITP 122
            +    ++  ++V    P  ++  + +   D       + + PT +   +  T  ++   
Sbjct: 37  AEAADGREAIALVRQHRPDVVLLDIQMPGLDGLTAVARLHREPTPVGVIMLTTFGQDAYV 96

Query: 123 PAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
              ++   + +     D   +  G+  +   G  +         +     A M      H
Sbjct: 97  TRALEEGADGFLLKADDPRELLNGVRAVGAGGAYLSP------RVAGRVIAGMRAHRAAH 150

Query: 180 WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +  E LTGRE E L  I  G ++ EIA  L +   TV  ++++++ K   + R  A  
Sbjct: 151 PHRPLERLTGREREVLAGIGTGLSNAEIAGRLHLVEGTVKAHVSAVLAKLGVRNRVEAAI 210

Query: 239 YAVRNNIV 246
            A    ++
Sbjct: 211 AAHEAGLL 218


>gi|256421426|ref|YP_003122079.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036334|gb|ACU59878.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 207

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 18/202 (8%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +V       + L +I+ SD   ++       +         +P  +   V       +  
Sbjct: 6   VVEDHPIMVEGLKNILRSDAGIEVSGAYGDGKSALQALEKGQPDVILMDVNLPDISGVNL 65

Query: 123 PAGMDNRY-----CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-------- 169
              +  +Y      +L+    +  I  ML       +L++ L    + A Y         
Sbjct: 66  CGEVKKKYEDIKIIALSIHDEQPVIHSMLQNGASGYVLKNALGNEIIHAIYAIMDGEEYL 125

Query: 170 ----ANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                   K+ D+   K    +T RE E L  I +G T+ +IA  L IS +TV ++  ++
Sbjct: 126 CSSTKEALKNADMELLKAIPRITRREKEILQLIGKGLTTMQIADQLFISTHTVESHRKNL 185

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           M K      +  +  A    ++
Sbjct: 186 MEKFGVNNTTSVVKLASEYKLL 207


>gi|219664363|gb|ACL31213.1| two-component system putative response regulator [Rhodococcus sp.
           TFB]
          Length = 206

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 42/81 (51%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            +++A+  +S +        L+ RE+E L  I+ G T+ EIA  L +S  TV ++ ASI 
Sbjct: 125 VSFRADTTESENPLEANIDSLSSRELEVLKLIASGLTNTEIAEGLTVSSRTVESHRASIQ 184

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK   +TR+     A    ++
Sbjct: 185 RKLLLRTRAELARVARDAGLL 205


>gi|149187522|ref|ZP_01865819.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1]
 gi|148838402|gb|EDL55342.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1]
          Length = 210

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 12/153 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-PPAGMDNRYCSLTFDVARIRIGLM 145
           ++ M+  +  K          +       +P +I        + Y     +   I   L 
Sbjct: 59  MKGMSGLDTLKALREDDFQGHIVILTVSDIPADIDALVKAGADGYLLKDTEPDEIIELLR 118

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            L    +            +  Y      + DV       LT RE++ L  +++G  + +
Sbjct: 119 GLTSGNKAFS-------SAIEKYLEERANTSDV----FATLTEREMQILQEVAKGFRNKQ 167

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           IA  L IS +TV  ++ S++RK    +R+ A  
Sbjct: 168 IADRLFISESTVKVHMKSLLRKLQVPSRTAATI 200


>gi|325972442|ref|YP_004248633.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324027680|gb|ADY14439.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy]
          Length = 314

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F    +   K F LT RE E  + I++G T+ EIA  LGIS  TV  +I ++ +K   +
Sbjct: 244 AFGELSLETAKRFLLTAREQEMASLIAQGLTNKEIAFRLGISEATVRTHIYNLFQKVGVQ 303

Query: 232 TRSGA 236
           +R   
Sbjct: 304 SRIEL 308


>gi|169833204|ref|YP_001695355.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|168995706|gb|ACA36318.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
          Length = 199

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V   +   LT +E+  L  I+ G ++ EIA  L +S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|167633195|ref|ZP_02391520.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
 gi|167531233|gb|EDR93911.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
          Length = 233

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 91/230 (39%), Gaps = 16/230 (6%)

Query: 17  EQRTSFVSHLPT-RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +++   VS   +  +++  +++  D        M  +        F +V      ++ ++
Sbjct: 6   QRKDVNVSRGSSILTNMKIKILIADDNSFIREGMKIILNTYE--EFEVVDTVNDGKEAVE 63

Query: 76  SIVSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---Y 130
               +D    L  VR   ++  +    + +  TE    +  T  ++      + N    Y
Sbjct: 64  YCKKNDVDIALLDVRMPNMNGVEATKLICEE-TETKPLILTTFDDDEYILDAVKNGAKGY 122

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGR 189
                D  RIR  +  ++    ++    L +I        N+ +S +     D  L T R
Sbjct: 123 LLKNNDPERIRDAIKGVYNGQTVMQDVVLDKIK------CNLMESKEDECKIDKCLFTER 176

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E+  +  I++G ++ EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 177 ELSIIALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226


>gi|134098243|ref|YP_001103904.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004336|ref|ZP_06562309.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910866|emb|CAM00979.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 218

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 69/218 (31%), Gaps = 9/218 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  +        +  + E  G    L V  +     +  + V    P  +V  + +
Sbjct: 1   MTRILLAEDEQIVRAGLRKILESAGD---LTVIAEAGDGAEAVTGVRRHAPDVVVMDIQM 57

Query: 93  SEKDK-----YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              D          L  P ++          N+            L        I  + +
Sbjct: 58  PRLDGLAATRQITSLPAPPKILILTMFDFDANVYSAIEAGASGFLLKDARPEELINAIRV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +L   +    LL+ +                ELT RE + L+ +  G ++  IA
Sbjct: 118 IADGDAMLSPSVTRR-LLSHFADRNSPRGPTAVRGLDELTPRERQILSLVGGGLSNASIA 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             LG + +TV  +++ ++ K   + R      A    I
Sbjct: 177 KTLGATESTVKGHVSRLLMKLDCENRVQLALIAHNAGI 214


>gi|217970367|ref|YP_002355601.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507694|gb|ACK54705.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 220

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 14/171 (8%)

Query: 82  WPFDLV-RCMALSEKDK---YYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLT 134
            P DLV   +A+   D       +L R      +    F          A     Y +  
Sbjct: 47  QPVDLVCMDIAMPGMDGIEATRRLLARHPALRVIGLSAFADRQFVTDLLAAGARGYITKG 106

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +      +  +       +AA  A+  +     +     LT RE + L
Sbjct: 107 EAGDELLRAIRTVCEGRSYLCPE-------VAATVADALRDSPGVYAAAPRLTARERQVL 159

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             I+EG TS +I   L I+ +TV  +  ++MRK      +    YA+ + I
Sbjct: 160 QLIAEGLTSVQIGDRLHIAASTVEVHRRNLMRKLDLHNVAELTRYAIHSGI 210


>gi|86739019|ref|YP_479419.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86565881|gb|ABD09690.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 214

 Score = 78.9 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 12/220 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R+   D      + +  L E       VG +       +L +  + D +V  D    +
Sbjct: 1   MIRVAVADDQPLVRLGLRVLIETEDDLELVGEAEDGRAAVELVRATRPD-VVLLDIRMPV 59

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  +A          L     +    F           G  + +     + A +   + +
Sbjct: 60  LDGLAALRTIVEDPDLAATRVVMVTTFELDEYVFEALRGGASGFVLKDTEAADLLRAIRV 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     ++       +    A +     + D+       LT RE E ++ +  G ++DEI
Sbjct: 120 VAAGESLLSPTVTRLVIETFARRPAAVAAPDLR-----GLTVREREVMSLVGHGLSNDEI 174

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  T   +++ +M K A + R+     A +  +V
Sbjct: 175 AARLVISPATARTHVSRVMVKLAARDRAQLAVLAHQAGLV 214


>gi|258650587|ref|YP_003199743.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258553812|gb|ACV76754.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 938

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 148 FPKGRIILRDRLWEIGLLA----AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            P G  +    L E   LA    A  A     +         LT RE E    + +G T+
Sbjct: 837 SPAGGDLAGTALAEFERLAMPGPAAAARRLLEHRSPAAHGDGLTDREAEVAGLVGQGLTN 896

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  L +S  TV +++ + + K    +R+    +
Sbjct: 897 KQIAAQLFLSVRTVESHVRNALAKLQLTSRTELALW 932


>gi|222106434|ref|YP_002547225.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737613|gb|ACM38509.1| two component response regulator [Agrobacterium vitis S4]
          Length = 779

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 83  PFDLVRC-----MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           P  LVR      + L+   +      R   L   VF     +    A  +          
Sbjct: 623 PHLLVRQEIAVSLWLAFVLRQTQQNSRARTLLRQVFERCASHGGLTALSEEWLFLDHLLQ 682

Query: 138 ARIRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +  +  ++     R ILR  DR     L AA                  LT +E++ LT
Sbjct: 683 DKRIVEFVMAATPARAILRRLDRGRHSSLAAA---------------RTRLTQQELKILT 727

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ++EG ++  IA   GIS  TV  ++ ++ RK     R  AIA A    
Sbjct: 728 MLAEGASNKLIARNSGISEPTVKFHLKNVYRKLGCSRRHEAIAAAKALG 776


>gi|295835091|ref|ZP_06822024.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197697998|gb|EDY44931.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 216

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 9/163 (5%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDV 137
           P  ++  + +   D        V ++  ++       L E++        + +     D 
Sbjct: 49  PDLVLMDVRMPRLDGVSATRTVVAEQLADVLVLTTFDLDEHVFGALRAGASGFLLKDIDA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLT 195
             +   +  +     +I     W   L+A Y ++     D          LT RE E L+
Sbjct: 109 DGLIDAVRTVAAGNGLIAPTIGWR--LIAEYASSRASRGDRLTDSAALETLTPREREVLS 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +  G ++ EI+  L ++  TV  +++ ++ K   ++R+ A  
Sbjct: 167 CLGWGLSNAEISTRLQMAETTVKTHVSRLLSKLNLRSRAQAAV 209


>gi|171778727|ref|ZP_02919823.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282684|gb|EDT48108.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 198

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 37/81 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +    +D  L+ +E   L  IS GK++ +IA  L +S  TV NY +S
Sbjct: 116 VLAGKKEYSSELMESMISQDNPLSPQEKRILQLISLGKSNQDIADTLYLSNGTVRNYTSS 175

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I  K +   R  A   A    
Sbjct: 176 IFNKLSANNRVEAARIAKDKG 196


>gi|148998533|ref|ZP_01825974.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|168576597|ref|ZP_02722463.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|307068610|ref|YP_003877576.1| CheY-like receiver/HTH DNA-binding domain-containing response
           regulator [Streptococcus pneumoniae AP200]
 gi|147755726|gb|EDK62772.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|183577636|gb|EDT98164.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|306410147|gb|ADM85574.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Streptococcus pneumoniae AP200]
          Length = 199

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V   +   LT +E+  L  I+ G ++ EIA  L +S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|37676847|ref|NP_937243.1| response regulator [Vibrio vulnificus YJ016]
 gi|326424276|ref|NP_762663.2| nitrate/nitrite response regulator protein [Vibrio vulnificus
           CMCP6]
 gi|37201391|dbj|BAC97213.1| response regulator [Vibrio vulnificus YJ016]
 gi|319999662|gb|AAO07653.2| Nitrate/nitrite response regulator protein [Vibrio vulnificus
           CMCP6]
          Length = 210

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++A Y     ++ DV      ELT RE + L  ++ G  + +IA  L IS +TV  ++ 
Sbjct: 129 SVVAKYLLQREENTDV----FDELTERERQILQEVARGFRNKQIADRLFISESTVKVHMK 184

Query: 223 SIMRKTATKTRSGAIA 238
           S+++K    +R+ A  
Sbjct: 185 SLLKKLKVPSRTAATV 200


>gi|90426293|ref|YP_534663.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisB18]
 gi|90108307|gb|ABD90344.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB18]
          Length = 223

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  
Sbjct: 149 RDRLITLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIA 208

Query: 240 AVR 242
           A +
Sbjct: 209 AAK 211


>gi|330986356|gb|EGH84459.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331011222|gb|EGH91278.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 220

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 1/161 (0%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            ++ +   E  ++   +Q   ++     HT P+ I     +  R   L    A      +
Sbjct: 57  WMKSVDGLEALEHLLKVQPHCKVLILSMHTDPDMIMRALDIGARGYLLKDTTATELEQAL 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                    L   +    +  A +            + + LT R++E L  I  GK++ E
Sbjct: 117 EALRNNERYLSPAIAHTVIERALRGTRSDRAQAAKER-YHLTARQLEILRLIVRGKSTRE 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  LG+S  T+  + + +M++      +G + + VR  I+
Sbjct: 176 IADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRERII 216


>gi|329954342|ref|ZP_08295434.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
 gi|328527610|gb|EGF54603.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
          Length = 233

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK +      A  YA+
Sbjct: 162 QDALLTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLSVNNAHEATKYAM 221

Query: 242 RNNIV 246
           +  IV
Sbjct: 222 KAGIV 226


>gi|307296356|ref|ZP_07576183.1| transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878158|gb|EFN09381.1| transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 234

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 153 IILRDRL--WEIGLLAAYQANMFKSYDV-------HWGKDFELTGREVECLTWISEGKTS 203
           ++LR+ L  +   L+A  QA    + +           K   LT R+ + L  +++G ++
Sbjct: 130 LLLREGLAVYHASLVAMLQARAPGASESLGERVALAVDKFKLLTKRQRDVLRLLAQGASN 189

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +IA  L IS +TV  ++ +IM       R+  +A+ ++
Sbjct: 190 KDIAQRLNISESTVKVHVRAIMAVNGASNRTQIVAHLLK 228


>gi|289751092|ref|ZP_06510470.1| predicted protein [Mycobacterium tuberculosis T92]
 gi|289691679|gb|EFD59108.1| predicted protein [Mycobacterium tuberculosis T92]
          Length = 219

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A    
Sbjct: 152 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAAHRG 210


>gi|262173869|ref|ZP_06041546.1| nitrate/nitrite response regulator protein [Vibrio mimicus MB-451]
 gi|261891227|gb|EEY37214.1| nitrate/nitrite response regulator protein [Vibrio mimicus MB-451]
          Length = 200

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+  +      +        + D        LT RE++ ++ +++G  + +IA  L IS
Sbjct: 108 LLKQAMQGEKAFSESVERYLLNRDEESNPFEALTEREMQIMSEVAKGYRNRQIADRLFIS 167

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 168 ESTVKVHMKSLLKKLDVPSRTAATI 192


>gi|215427869|ref|ZP_03425788.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T92]
          Length = 249

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A    
Sbjct: 182 LTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAAHRG 240


>gi|323494233|ref|ZP_08099345.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323311396|gb|EGA64548.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 209

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 16/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++          D     L   + ++  G   L P+    L ++L E          
Sbjct: 90  VVRSVKSGAKGYVLKDVGSEELVMAINQVAQGRSYLCPQASDRLLEQLNEK--------- 140

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     KD  L+ RE + L  I  G  + EIA  L IS  TV  +   I +K    
Sbjct: 141 -------PQPKDDTLSKRESDVLKEIVNGSGNKEIADSLHISVRTVETHRLRIKKKLGAT 193

Query: 232 TRSGAIAYAVRNNIV 246
           + +  +  A++  +V
Sbjct: 194 STAALVKLALQKGLV 208


>gi|288962862|ref|YP_003453156.1| two-component response regulator [Azospirillum sp. B510]
 gi|288915128|dbj|BAI76612.1| two-component response regulator [Azospirillum sp. B510]
          Length = 227

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 8/160 (5%)

Query: 84  FDLV----RCMALSEKDKYYNVLQRPTELFCPVFHTL--PENITPPAGMDNRYCSLTFDV 137
           FDL+    R   L   D    +++R   +   +F  +  P+ +        R        
Sbjct: 58  FDLIVMDLRMPGLGGLDDVEALVKRVAPVPVAIFSMIESPDEMRAVLSRGVRAFIPKSTD 117

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             + + ++ L   G   +   L   G           + +   G    LT R++E L  +
Sbjct: 118 DVLVVNILRLVMAGGSYVPPVLGMPGT--PAPVATAAARNAAPGIFDGLTRRQLEVLDLL 175

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ++G ++ EI   LG++ +TV  ++  +++     +R+ A+
Sbjct: 176 AQGLSNQEIGERLGLNLSTVKTHVTGVLKALGVGSRTQAV 215


>gi|75763478|ref|ZP_00743197.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218896774|ref|YP_002445185.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
 gi|74489035|gb|EAO52532.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218541910|gb|ACK94304.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
          Length = 223

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 76  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 135

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I       +N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 136 MQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 189

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 190 SEGTIANYITSVLGKTGLEHRTQIAIY 216


>gi|314930861|gb|EFS94692.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
          Length = 218

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 78  VSSDWPFDL-VRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           V    P D+ +  + + + D       +   P +    +  T   +    A +       
Sbjct: 45  VLRRMPVDVALMDIRMPQMDGVEATRRITASPLDTKVLILTTFDLDEYVYAALKAGASGF 104

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192
               AR    L  +                 L  +      +      K    LT RE E
Sbjct: 105 LLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLSVLTDREKE 164

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    ++
Sbjct: 165 VLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL 218


>gi|302531276|ref|ZP_07283618.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440171|gb|EFL11987.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 229

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ +   + G T+ EI   L +S +TV  ++AS+  K   + R    A+A R+ 
Sbjct: 167 PLTARELDVVKAAARGLTNTEIGAELFLSLSTVKTHLASVQGKVGARNRVEIAAWAWRSG 226

Query: 245 IV 246
           +V
Sbjct: 227 VV 228


>gi|294055008|ref|YP_003548666.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614341|gb|ADE54496.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 238

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I+E  ++ EIA  LG+S  T + +  +IM+K      +    +A+ N +
Sbjct: 166 LTTREREIVQLIAESYSNKEIAAKLGMSVRTADTHRTNIMKKLNLHDVAALTRWAIANKL 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|282864949|ref|ZP_06274003.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560374|gb|EFB65922.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 224

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     D   I   +  +      + R  L    +    +    +      G D  LT 
Sbjct: 102 GFLLKDSDPEEILRAIRHIAAGHGTLDR-TLTRRIVAEYVERRRLRPVTAARGIDI-LTA 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  +++G ++++IA  L +   TV +++A ++ K   ++R  A  +A +N +V
Sbjct: 160 REREILLLLAQGMSNEQIAGALVVEVATVKSHLARLLPKLGVQSRLQAAVWAYQNRVV 217


>gi|51891164|ref|YP_073855.1| two-component response regulator variant [Symbiobacterium
           thermophilum IAM 14863]
 gi|51854853|dbj|BAD39011.1| two-component response regulator variant [Symbiobacterium
           thermophilum IAM 14863]
          Length = 78

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +   +  ELT RE E    + +G TS  IA  L IS  T + + ASIMRK    T    +
Sbjct: 1   MATSRYEELTPREQEVFRLLVDGYTSKAIARALYISPKTADKHRASIMRKLEVNTFPELV 60

Query: 238 AYAVRNNIV 246
            YAV   ++
Sbjct: 61  RYAVSIGLL 69


>gi|284032256|ref|YP_003382187.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811549|gb|ADB33388.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 217

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 13/170 (7%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRYC 131
           V  D P  ++  + +   D      +  +    PV      F T    +         Y 
Sbjct: 50  VIRDRPDVVLMDLRMPGVDGVAATAEVRSLPEPPVVVVMTTFDTDDHLLAALDAGAAGYL 109

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGRE 190
             +   + +   ++       ++  + +  +  LA        S         E L+GRE
Sbjct: 110 LKSTPTSTLVQLVLAAAAGASVLSPEAVHRLRDLAN------SSTPTDPDPQLEALSGRE 163

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            E L  + EG ++ +IA  L +S  T+  +++ +M     + R+     A
Sbjct: 164 REILALLGEGLSNADIARRLYLSEGTIKGHVSRLMADLDCQNRTQLALRA 213


>gi|254283973|ref|ZP_04958941.1| transcriptional regulator, LuxR family [gamma proteobacterium
           NOR51-B]
 gi|219680176|gb|EED36525.1| transcriptional regulator, LuxR family [gamma proteobacterium
           NOR51-B]
          Length = 206

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 4/161 (2%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           S D  +  V   + +E +     L R     +         E +   +     YC     
Sbjct: 39  SDDLCWLDVSSFSSAEAEAAVKRLTREDARVVALSAAPQEAEAVRLISAGARGYCHADAV 98

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++     ++   G  +    +  +  +AA         +V       LT RE E    
Sbjct: 99  PEQLLEVKQVVAAGGYWMQPGLVQRMVAIAARVDPDTPQPEVEG--FDALTHREYEVAAL 156

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + +G  + EIA +LG+S  TV  ++ +I  K   + R    
Sbjct: 157 VGKGANNKEIAELLGVSERTVKAHLTAIFEKLELRDRVQLA 197


>gi|212710861|ref|ZP_03318989.1| hypothetical protein PROVALCAL_01929 [Providencia alcalifaciens DSM
           30120]
 gi|212686558|gb|EEB46086.1| hypothetical protein PROVALCAL_01929 [Providencia alcalifaciens DSM
           30120]
          Length = 206

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 19/174 (10%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D+I+  +  F+ +R +     + Y  VL   T +   ++  +          ++  
Sbjct: 52  MILIDTILQGNKTFETIRLLRKHCINSYLLVLSFST-MKTDIYAAIDAGAQGYLLKNSEL 110

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L   + +   G  +   K                        +          LT RE
Sbjct: 111 DMLLNSLKKAMEGHHVFSEK------------------VYQHLITRHQTKDPLSTLTRRE 152

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            E L  ++ G  + EI+ +L IS  TV  +I ++++K   ++R  A    +R+ 
Sbjct: 153 CEILHEMAAGLKNKEISQLLFISEETVKVHIRNVLKKLRVRSRLEASLIYMRSK 206


>gi|168487139|ref|ZP_02711647.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|194398168|ref|YP_002038583.1| response regulator [Streptococcus pneumoniae G54]
 gi|225861819|ref|YP_002743328.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230314|ref|ZP_06963995.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255058|ref|ZP_06978644.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503771|ref|YP_003725711.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|183569979|gb|EDT90507.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|194357835|gb|ACF56283.1| response regulator TCS11 [Streptococcus pneumoniae G54]
 gi|225728123|gb|ACO23974.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298239366|gb|ADI70497.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|327389165|gb|EGE87511.1| response regulator [Streptococcus pneumoniae GA04375]
          Length = 199

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V   +   LT +E+  L  I+ G ++ EIA  L +S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|15613144|ref|NP_241447.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173195|dbj|BAB04300.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 201

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 25/220 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  +        M AL + +     ++ +     E      +    P   +  + L
Sbjct: 1   MIRIVIAEDQTMLLGAMTALLQ-LEDDIKIVAQARNGLEALAA--IEKHQPDLCILDIEL 57

Query: 93  S-----EKDKYYNVLQR-PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                 E  K     +     +    F                Y      +  +   +  
Sbjct: 58  PNMTGLEVAKRIREQEWDCKMMIVTTFARASYLQQAMDLKVEGYLLKDEPIEFLVEAIHK 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    R++  D    + L                 ++  LT RE E L     GKT+++I
Sbjct: 118 VMNGERVLSPDLAMHLFL----------------KEENPLTEREQEVLRLTKGGKTTEQI 161

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A +L ++  TV NYI++ ++K   + R  AI  A     +
Sbjct: 162 ATVLYLTNGTVRNYISTAIQKLEVENRHQAIQKAEEKGWI 201


>gi|289625340|ref|ZP_06458294.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289647488|ref|ZP_06478831.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330867747|gb|EGH02456.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 220

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 1/139 (0%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +     HT P+ I     +  R   L    A      +         L   +    +  A
Sbjct: 79  VLILSMHTDPDMIMRALDIGARGYLLKDTTATELEQALEALRNNERYLSPAIAHTVIERA 138

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +       +    + + LT R++E L  I  GK++ EIAV LG+S  T+  + + +M++
Sbjct: 139 LRGTRSDRAEAAKER-YHLTARQLEILRLIVRGKSTREIAVGLGLSIKTIETHRSQVMKR 197

Query: 228 TATKTRSGAIAYAVRNNIV 246
                 +G + + VR  I+
Sbjct: 198 LQIFDVAGLVLFCVRERII 216


>gi|118464868|ref|YP_880140.1| LuxR family transcriptional regulator [Mycobacterium avium 104]
 gi|118166155|gb|ABK67052.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           avium 104]
          Length = 183

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  +
Sbjct: 122 LSAREREVLHRIARGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGL 181

Query: 246 V 246
           +
Sbjct: 182 L 182


>gi|114571243|ref|YP_757923.1| two component LuxR family transcriptional regulator [Maricaulis
           maris MCS10]
 gi|114341705|gb|ABI66985.1| two component transcriptional regulator, LuxR family [Maricaulis
           maris MCS10]
          Length = 216

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 7/185 (3%)

Query: 67  DLFQEQKLDSIVS--SDWPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITP 122
           D+F +  +D + S  SD  +DL+   + +   +    +   R  +  CPV         P
Sbjct: 34  DVFDDP-VDFLKSFQSDSSYDLIILDLVMRTMNGLALLAAIRERKSRCPVLMLSGIGADP 92

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           P     +  +  F V +      LL     I+     +          +    +     +
Sbjct: 93  PLAEMKKLGARGF-VHKSADTETLLAAVDGILAGQTRFFGAPDPDADGDEDDDWPPRGDR 151

Query: 183 DFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L  R++E +  ++ G T+ E+A  L IS NTV +++ +I       TR+  +  A 
Sbjct: 152 PLPRLGQRQLEIVHLMAGGATNKEVAATLNISENTVKSHMRAIFEALDVHTRTACVRKAQ 211

Query: 242 RNNIV 246
              ++
Sbjct: 212 ALGMI 216


>gi|148264823|ref|YP_001231529.1| two component LuxR family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146398323|gb|ABQ26956.1| two component transcriptional regulator, LuxR family [Geobacter
           uraniireducens Rf4]
          Length = 214

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 13/170 (7%)

Query: 83  PFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFD 136
           P  +V  + L +    +    ++ +   +   V   L +    +         Y +    
Sbjct: 49  PHVVVMDLTLPDMGGIEATRRIMAKNPRIRVLVLSMLLDRNCVLESLEAGARGYLAKDCA 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +F                        F            LT RE E L  
Sbjct: 109 AEELVAAIRTVFAGKPYFCAGA-------TEIMIKGFAPGSASQQIAPVLTKREREVLKL 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +EG  + EIA  LG+S   +  +  +I +K   K+ +    YAVR  ++
Sbjct: 162 TAEGYNTKEIAFTLGVSIKMIEIHRMNIRKKLGLKSIAQLATYAVRIGLI 211


>gi|108804775|ref|YP_644712.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766018|gb|ABG04900.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 208

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT R+ E L  ++EG+T+ +I   L +S +TV  ++ +  +    + R+ A 
Sbjct: 147 LTHRQQEILKLVAEGQTNAQIGRRLFLSESTVKQHLRAAYKVLKVRNRTEAA 198


>gi|300698252|ref|YP_003748913.1| LuxR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074976|emb|CBJ54545.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CFBP2957]
          Length = 252

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 24/182 (13%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------ 127
           +D +V+ D+P + +  +  +       +++R      PV+    +  +P  G D      
Sbjct: 53  MDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWLSTRRPVYF---DAASPWEGTDPVWLEK 109

Query: 128 -------NRYCSLTFDVAR---IRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANM 172
                  N      FD A           L       L   L ++     G L    A++
Sbjct: 110 FVKHDLHNCAADAVFDEANCVGTYFSFHALPTVEEGCLDATLRDLTPALHGALLRAVASV 169

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +           LT RE E    I +G+++ EIA ++  S +TV +Y++SIM KT  + 
Sbjct: 170 ERDLQQASQALATLTEREREVALLIGQGRSNAEIAQVVCKSESTVKHYLSSIMDKTGCEN 229

Query: 233 RS 234
           R 
Sbjct: 230 RV 231


>gi|293606534|ref|ZP_06688892.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815157|gb|EFF74280.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 228

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT R+ E L  + +GKT  EI   +GIS  TV ++  ++  K   + ++ A   AV+  
Sbjct: 153 ELTQRQEEILQLLVQGKTMREIGQHVGISVATVKSHARTLYWKLNARNQAEAAYIAVQMG 212

Query: 245 IV 246
           +V
Sbjct: 213 LV 214


>gi|262403730|ref|ZP_06080288.1| nitrate/nitrite response regulator protein [Vibrio sp. RC586]
 gi|262350234|gb|EEY99369.1| nitrate/nitrite response regulator protein [Vibrio sp. RC586]
          Length = 202

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 40/86 (46%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L+  +      +        + D        LT RE++ ++ +++G  + +IA  L I
Sbjct: 108 ALLKQAMRGEKAFSESVERYLLNRDDASNPFEALTEREMQIMSEVAKGYRNRQIADRLFI 167

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIA 238
           S +TV  ++ S+++K    +R+ A  
Sbjct: 168 SESTVKVHMKSLLKKLDVPSRTAATI 193


>gi|170725009|ref|YP_001759035.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810356|gb|ACA84940.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 221

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   ++ +S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 156 LTSRERTIISLVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|27764012|emb|CAD60529.1| CinR protein [Streptomyces cinnamoneus]
          Length = 216

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 2/180 (1%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +  Q      +  +     + R   ++  ++   +   P  +    F          A 
Sbjct: 37  LEAVQRAGALRVDVALMDVRMPRMDGIAATERLRALPSPPEVVMLTTFDLDQYVYDALAA 96

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +     D A I   + ++     ++         L+  Y     +       +   
Sbjct: 97  GASGFLLKDTDPAEIIRAIQVVAAGQAMLHPAAARR--LVDRYHRTASRDVQAAQQRLAR 154

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G ++ EIA  LG+  +TV  +++ I+       R  A   A    +
Sbjct: 155 LTPRESDVLGLLAAGASNAEIADGLGMRESTVKAHVSRILAALEVGNRVQAALCARDAGL 214


>gi|318061656|ref|ZP_07980377.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076898|ref|ZP_07984230.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 214

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            + +   RL EI       +         D     D  L+ RE E L + ++G    EIA
Sbjct: 116 PKTVSAQRLAEIIRTVHAGSRYVDPELAADAIAAGDSPLSAREAEVLEYAADGAPVAEIA 175

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
              G+S  TV NY++S + K   + R  A+  A    
Sbjct: 176 QRAGLSPGTVRNYLSSAVTKLGAENRHAAVRTARSRG 212


>gi|310640405|ref|YP_003945163.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245355|gb|ADO54922.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 199

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE------IGLLAAYQAN 171
           +      G++ +   LT           +       +L+D   E        ++A  +  
Sbjct: 64  DAAEELRGLNCKVLILTTFARPGYFERAIKAGTHGYLLKDSPSEELASSIRSIMAGRRIY 123

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  D  + +   LT RE   L  I++GK + EIA  L ++  TV NYI+ I+ K    
Sbjct: 124 APELVDDAYAEVNPLTEREKTVLALIADGKNTKEIAGELFLTTGTVRNYISVILDKLGVS 183

Query: 232 TRSGAI 237
            R  AI
Sbjct: 184 NRIEAI 189


>gi|262384081|ref|ZP_06077217.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|262294979|gb|EEY82911.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
          Length = 203

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 3/138 (2%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            P + TL          + +  +L + V+   +              D +     L    
Sbjct: 61  LPGYFTLQHLKEESGCAEMKCIALLYSVSDSVLLRSYDEQINIYDSPDEIKHK--LERLN 118

Query: 170 ANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           A +  + +     + + L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK 
Sbjct: 119 AEVLPNDEPEGDDEQQSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKL 178

Query: 229 ATKTRSGAIAYAVRNNIV 246
              + SG   YA+ N +V
Sbjct: 179 QIHSASGLTIYAIVNKLV 196


>gi|227498188|ref|ZP_03928359.1| two-component system response regulator [Actinomyces urogenitalis
           DSM 15434]
 gi|226832414|gb|EEH64797.1| two-component system response regulator [Actinomyces urogenitalis
           DSM 15434]
          Length = 246

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              L +    +  +          LT RE E L  I+ G ++ E+   L +S  TV  ++
Sbjct: 151 ASALHSDPGQVITAEGTPPADLSGLTHREREILRLIALGLSNQELCDRLWLSMPTVKTHV 210

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
           + ++ KT  + R   +  A+R  
Sbjct: 211 SHLLAKTGARDRVHLVLTALRCG 233


>gi|225872367|ref|YP_002753822.1| two-component system response regulator [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794530|gb|ACO34620.1| two-component system response regulator [Acidobacterium capsulatum
           ATCC 51196]
          Length = 214

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 7/169 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           P  +V  + + E +      +        ++     H   E +        R   L  D 
Sbjct: 46  PTLVVIDVTMPELNGIEATRRILNALPTVKVIILTQHQSNELVRSAVEAGARGYLLKTDT 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +I +  +     G       + ++ L +  ++       + + +   LT RE E L  +
Sbjct: 106 GQILLQAIQSVMAGGTFFSPVITDVVLQSLARSVHLTGPGIVYKER--LTPREGEVLQLL 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGK++ E A +LG S  TV     ++MRK   +  S  + YAVRN+++
Sbjct: 164 AEGKSTKEAASVLGTSTFTVETQRKNVMRKLRLRNVSDLVRYAVRNHMI 212


>gi|205372373|ref|ZP_03225187.1| two component LuxR family transcriptional regulator [Bacillus
           coahuilensis m4-4]
          Length = 212

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 5/152 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIG 143
           ++   L+  +    +L +  +++  +     ++ +  + M      Y     +   I   
Sbjct: 57  IQMPDLNGIEATRKILSKCRDIYIIIITMFEDDTSVFSAMQAGARGYVLKDAEKEDILRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +          ++  +         V      ELT RE E L  +S+G ++
Sbjct: 117 VRAIAKGEVLFSSG--VASRMIDYFAQGEVTQTVVASTLFPELTSRESEVLFLLSKGASN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            E+A  LG+S  TV NY+A+I+ K     R  
Sbjct: 175 SEVAETLGLSNKTVYNYVANILNKLQVSDRQE 206


>gi|73749249|ref|YP_308488.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73660965|emb|CAI83572.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
          Length = 238

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           VH     +L  +E   L  +++G ++ +I   L  + +TV  Y+ + M+K     R+   
Sbjct: 170 VHDKFGVDLNEKEKIILHLLAKGYSNKDIGHKLEYTPSTVKKYVYNCMKKLGVSNRTQLA 229

Query: 238 AYAVRNNI 245
             A  N +
Sbjct: 230 ILANNNGL 237


>gi|329936902|ref|ZP_08286581.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329303827|gb|EGG47711.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 215

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           LF   R   R R      +A    +  +S          L+ RE E L  ++ G  + EI
Sbjct: 120 LFTAVRAAARGRTVLSPAVATRLVSAVRSPGGE-----PLSAREREVLALVARGTPNREI 174

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 175 ARALFISEATVKTHLTHLYGKLGVKDRAAAVAAAYDRGIL 214


>gi|325661231|ref|ZP_08149858.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472738|gb|EGC75949.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 208

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 127 DNRYCSLTFDVARIRIGL----MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           D+ Y      +      L      + P  R +L+ +      +      +F+       +
Sbjct: 86  DDEYIIKALHLGARGYILKQDYTGISPAIRAVLKGQTVFGAEITTRIPKLFEPQKAFDYE 145

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++LT RE   +  +++G+++ EIA  L +   TV NY++SI+ K   + R+    +  +
Sbjct: 146 TYQLTSREFSIIELVADGRSNREIAEALYLGEGTVRNYLSSILEKLELRDRTQLAVFFYQ 205

Query: 243 N 243
           +
Sbjct: 206 H 206


>gi|323357741|ref|YP_004224137.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323274112|dbj|BAJ74257.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 224

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 72/203 (35%), Gaps = 16/203 (7%)

Query: 55  YVGASHFLLVRWDLFQEQKLD-----SIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPT 106
             G S+ L    D+      D      ++ +  P  ++  + +  +D    + +   R  
Sbjct: 21  RTGFSYILNAAADIDVVATADGVGAIDVLEATHPDVVLLDIRMPGRDGLSVLREIRARGW 80

Query: 107 ELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           ++   +  T   +    A +D     +     D  ++   +  L   G +          
Sbjct: 81  DMTVAILTTFDSDDHIAAALDGGAAGFLVKDTDPRQLPQLVRTLHGGGVVFSPT--VSRA 138

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++A Y   +             LT RE E L  +  G ++ +I   + +S  TV  +I++
Sbjct: 139 VVAGY---LRPETGGDTRLVEGLTEREKEILVHLGRGLSNAQIGSEMFLSPATVKAHIST 195

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R  A   A R  ++
Sbjct: 196 ILSKLGVEGRVSAALIAERAGLL 218


>gi|317484063|ref|ZP_07942996.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia
           3_1_6]
 gi|316924707|gb|EFV45860.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia
           3_1_6]
          Length = 282

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   T D     + +  L    + I  +      L  +   +          K  
Sbjct: 162 AGADGYLLKTADEDEFLVAIRALLKGRKYISTE------LTGSMIISYVDGNAEASSKAD 215

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E   L  I+EG ++ +IA  L +S  T++ +  S M+K           +A++N 
Sbjct: 216 SLTPKEKMVLKLIAEGNSNKDIAAKLNLSVKTIDTHRTSFMKKLDLHNVREVTRFAMQNG 275

Query: 245 IV 246
           +V
Sbjct: 276 LV 277


>gi|182412651|ref|YP_001817717.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839865|gb|ACB74117.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 219

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    T     D     L   +  +R G   L P              +LA ++  
Sbjct: 93  VLQALRAGATGYLLKDAATAELQLALNAVRKGETYLSPSISK---------SVLARFRQ- 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  D        LT R  E +  I+EG+++ EIA +L +S  T+  +   +M +    
Sbjct: 143 --QEQDPRAEPTKALTPRMREIVQLIAEGRSTKEIAFLLNLSVKTIETHRMHLMARLGLH 200

Query: 232 TRSGAIAYAVRNNIV 246
             +G + YA+R  ++
Sbjct: 201 DVAGVVRYALRTGLI 215


>gi|160934711|ref|ZP_02082097.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753]
 gi|156866164|gb|EDO59536.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753]
          Length = 212

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 33/53 (62%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + RE++ ++ +++G ++ EIA  L +S  TV NY+++++ K   + R+    +
Sbjct: 151 SPRELDVISLVAKGLSNKEIAEALFLSEGTVRNYLSAVLDKLELRDRTQLAVF 203


>gi|187929125|ref|YP_001899612.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187726015|gb|ACD27180.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 219

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+ E L  ++EGK++ +I  +L ++  T+ N++ ++ R+     R+ A  +
Sbjct: 150 LTPRQHEVLQLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVNNRTEAALW 203


>gi|110680738|ref|YP_683745.1| LuxR family DNA-binding response regulator [Roseobacter
           denitrificans OCh 114]
 gi|109456854|gb|ABG33059.1| DNA-binding response regulator, LuxR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 204

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 83  PFDLVR-CMALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPAGMDN--RYCSLTF 135
           PFDLV     +   +    + +     P + F  +  T P  I   A       Y   + 
Sbjct: 46  PFDLVLLDFGMPGMNGLDGLSEAIKSHPNQPFAILSGTAPNRIAQQAVARGAIGYLPKSM 105

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +      +    L E G          ++ +  + K  +L+ RE + L+
Sbjct: 106 GAKSLVNAVRFMIAGETYVPASLLGESG----------ETGETEFTK--KLSRREKQVLS 153

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +  GK++ EIA  L +   T+  ++ ++ +K   K R+ A   A    
Sbjct: 154 GLCNGKSNKEIARDLDLQEVTIKLHVRTLCKKLDAKNRTQAAMIARNAG 202


>gi|309792094|ref|ZP_07686568.1| two-component system response regulator [Oscillochloris trichoides
           DG6]
 gi|308225901|gb|EFO79655.1| two-component system response regulator [Oscillochloris trichoides
           DG6]
          Length = 215

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 12/137 (8%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
             V + L  +       D     L   +  +  G   L P     +  RL          
Sbjct: 88  QDVMNALEHDADGYLLKDAPAEELLHAIRVVASGQAYLQPSITRRVLRRLSSSNAPQQPL 147

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                            T RE++ L  ++  +++ E+A  + ++  TV ++I SI+ K  
Sbjct: 148 LPPQL------------TPRELDVLRLMATSRSNKEMAEAMTVTEETVRSHIKSILNKLR 195

Query: 230 TKTRSGAIAYAVRNNIV 246
              R  A+  A+R  I+
Sbjct: 196 QPNRMQAVLMALRLGII 212


>gi|302536520|ref|ZP_07288862.1| predicted protein [Streptomyces sp. C]
 gi|302445415|gb|EFL17231.1| predicted protein [Streptomyces sp. C]
          Length = 224

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E LT ++   ++ +IA  LG++  TV  ++ +I  K    +R  A+  A+   +
Sbjct: 154 LSPREREVLTLVAHAMSNRQIASELGVAEGTVKRHLRNIFEKLEAVSRVDAVNKAIDAQL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|229079021|ref|ZP_04211573.1| Response regulator [Bacillus cereus Rock4-2]
 gi|228704435|gb|EEL56869.1| Response regulator [Bacillus cereus Rock4-2]
          Length = 212

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++  G+ 
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVY-NGQT 123

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +++D +     L   ++N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 124 VMQDVI-----LDKIKSNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|317474899|ref|ZP_07934168.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908802|gb|EFV30487.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 192

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L+ RE+E L  I++G  + EIA  L IS  TV  +  +I+ K   K+ SG   YAV 
Sbjct: 124 NHDLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGIKSVSGLTIYAVM 183

Query: 243 NNIV 246
           +  V
Sbjct: 184 HGYV 187


>gi|302530377|ref|ZP_07282719.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302439272|gb|EFL11088.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 217

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  I +G ++ EI   L +S  TV  Y+++++ K     R  A   A R  +
Sbjct: 155 LSEREREVVALIGQGLSNAEIGGRLHLSEATVKGYVSAVLSKIGAANRVQAALLAYRGGL 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|33865914|ref|NP_897473.1| DNA-binding response regulator [Synechococcus sp. WH 8102]
 gi|33633084|emb|CAE07895.1| possible DNA-binding response regulator [Synechococcus sp. WH 8102]
          Length = 228

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F+ + C  L E+   + ++++  EL        P+       + +    + +D A     
Sbjct: 70  FEFLLCTDLLERGNGFELVRKAREL-------QPDLKVVVLALSD-AIPVGYDSAPWLEA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLA-----AYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           ++    +  II   +  E  +LA     +Y++   +S ++ +     LT RE E L  ++
Sbjct: 122 VV---AEADIIEDRKPLEAAVLAVMGHHSYRSPSLRSDELPYLSCPRLTPREYEVLDRLA 178

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G +  +IA  L ++  T   Y   ++R      R  A+   +R  +V
Sbjct: 179 RGMSDRDIAEDLVVTEETARTYTKRLLRTLEVNNRVQAVLKGMRCGMV 226


>gi|329957350|ref|ZP_08297870.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
 gi|328523063|gb|EGF50166.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
          Length = 215

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 36/73 (49%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  D     D   T RE++ L  I++G ++ EI+  L IS NTV  +  ++M K A +  
Sbjct: 139 RPDDETELPDMLPTSRELDVLKAIAQGMSTHEISRHLFISENTVEWHRKNLMLKFAARNA 198

Query: 234 SGAIAYAVRNNIV 246
           +  +  A+    +
Sbjct: 199 TDLVIKALTKGYL 211


>gi|314980198|gb|EFT24292.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|315088072|gb|EFT60048.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
          Length = 218

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 78  VSSDWPFDL-VRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           V    P D+ +  + + + D       +   P +    +  T   +    A +       
Sbjct: 45  VLRRMPVDVALMDIRMPQMDGVEATRRITASPLDTKVLILTTFDLDEYVYAALKAGASGF 104

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192
               AR    L  +                 L  +      +      K    LT RE E
Sbjct: 105 LLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLSVLTDREKE 164

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    ++
Sbjct: 165 VLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL 218


>gi|149024961|ref|ZP_01836341.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|225859757|ref|YP_002741267.1| response regulator [Streptococcus pneumoniae 70585]
 gi|147929454|gb|EDK80449.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|225720998|gb|ACO16852.1| response regulator [Streptococcus pneumoniae 70585]
 gi|301794941|emb|CBW37404.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|332200013|gb|EGJ14087.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 199

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V   +   LT +E+  L  I+ G ++ EIA  L +S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|71737566|ref|YP_275380.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71558119|gb|AAZ37330.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320323892|gb|EFW79976.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320328029|gb|EFW84034.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330875642|gb|EGH09791.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 220

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 3/162 (1%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            ++ +   E  ++   +Q   ++     HT P+ I     +  R   L    A      +
Sbjct: 57  WMKSVDGLEALEHLLKVQPHCKVLILSMHTDPDMIMRALDIGARGYLLKDTTATELEQAL 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSD 204
                    L   +    +  A +    +S      K+ + LT R++E L  I  GK++ 
Sbjct: 117 EALRNNERYLSPAIAHTVIERALRG--TRSDRARAAKERYHLTARQLEILRLIVRGKSTR 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  LG+S  T+  + + +M++      +G + + VR  I+
Sbjct: 175 EIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRERII 216


>gi|296270057|ref|YP_003652689.1| LuxR family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296092844|gb|ADG88796.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM
           43833]
          Length = 288

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   L+ RE++ L  ++ G  + E A  LGI   TV +Y+ + MRK  T 
Sbjct: 213 RLTRPGGRPARPNPLSPRELDVLALVAVGCGNAEAARRLGIGPETVKSYLRNAMRKLGTH 272

Query: 232 TRSGAIAYAVRNNIV 246
           +R   +  A R   +
Sbjct: 273 SRMETVVAARRAGFL 287


>gi|269926239|ref|YP_003322862.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789899|gb|ACZ42040.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 225

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 15/192 (7%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKD----KYYNVLQRPTELFCPVFHTLPENITP 122
           ++   +  D +   D    LV  +     D           R T +   +    PE +  
Sbjct: 21  NMLMMEDFDVVEELDDINMLVERVIAVRPDLLLMDVSEARLRSTSIIESISSKAPE-VRI 79

Query: 123 PAGMDNRYCSLTFDVARIRI---------GLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
               +++   L FD  R+               ++   R+I  +  +   L     + + 
Sbjct: 80  VVLAEDKDILLVFDALRVGARGYITKEVDYARFIYVLRRVIHGEITFTPDLARKLVSELT 139

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTS-DEIAVILGISRNTVNNYIASIMRKTATKT 232
             Y         LT RE E L+ +  G +S  ++A  LG++ +TV  +  +I+ K   K 
Sbjct: 140 TRYSSKNEPFALLTSREREILSLLVHGVSSTRDLAEKLGVTEHTVKFHFRNILSKLHLKN 199

Query: 233 RSGAIAYAVRNN 244
           R+   AYA R N
Sbjct: 200 RAQVAAYAARYN 211


>gi|149007477|ref|ZP_01831120.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147761049|gb|EDK68018.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
          Length = 199

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  ++   +   LT +E+  L  I+ G ++ EIA  L +S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|258624788|ref|ZP_05719719.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM603]
 gi|258582950|gb|EEW07768.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM603]
          Length = 207

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+  +      +        + D        LT RE++ ++ +++G  + +IA  L IS
Sbjct: 115 LLKQAMQGEKAFSESVERYLLNRDEESNPFETLTEREMQIMSEVAKGYRNRQIADRLFIS 174

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 175 ESTVKVHMKSLLKKLDVPSRTAATI 199


>gi|311107673|ref|YP_003980526.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762362|gb|ADP17811.1| bacterial regulatory protein, LuxR family protein 10 [Achromobacter
           xylosoxidans A8]
          Length = 221

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT R+ E L  + +GKT  EI   +GIS  TV ++  ++  K   + ++ A   AV+  
Sbjct: 145 ELTQRQEEILQLLVQGKTMREIGQQVGISVATVKSHARTLYWKLNARNQAEAAYIAVQMG 204

Query: 245 IV 246
           +V
Sbjct: 205 LV 206


>gi|198275681|ref|ZP_03208212.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135]
 gi|198271310|gb|EDY95580.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135]
          Length = 202

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        L+ RE E +  +  G T+ EIA  L IS +TV  +  +I RK    + +G 
Sbjct: 124 NEKESDQDSLSQREKEIVGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIHSAAGL 183

Query: 237 IAYAVRNNIV 246
             YA+ N +V
Sbjct: 184 TIYAIVNKLV 193


>gi|120612238|ref|YP_971916.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120590702|gb|ABM34142.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 240

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 4/180 (2%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           VR      + L  I S   P   +    L+E      +              +  +  P 
Sbjct: 52  VRHAHETSEALRIIASHGSPVLALVDFWLAEGAATSFIGNLFAMSPETRMLIMSADHHPA 111

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHW 180
             +  R       V +             ++     ++ G  A+            ++H 
Sbjct: 112 IVLKVRASGAHGFVHKRESPETFHAAVNAVLDGASWFDPGATASLSPSALGATPLREIHL 171

Query: 181 GK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D  LT R+ + L  + EG  +  IA  L +S +TV  ++ +I++K     R   I+ 
Sbjct: 172 APVDLGLTPRQGQILALVLEGLPNKPIANALHLSEHTVKEHLTAILQKLGVSNRVELISR 231


>gi|116694328|ref|YP_728539.1| ATP-dependent transcription regulator LuxR [Ralstonia eutropha H16]
 gi|113528827|emb|CAJ95174.1| ATP-dependent transcriptional regulator,MalT-family, truncated
           [Ralstonia eutropha H16]
          Length = 630

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 144 LMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGK 201
           ++   P    +L  ++  +   L +      ++   H      L +GRE E L  +++  
Sbjct: 521 MLARDPLPDPVLAFQVQRLMHALRSAAGRHGRATGGHEADALRLLSGREREILQLLAQAM 580

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ++ +IA+IL +S  TV  ++ +I  K    +R+GA A
Sbjct: 581 SNKKIAMILNVSAETVKWHLRNIYAKLGVGSRAGAAA 617


>gi|148654853|ref|YP_001275058.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148566963|gb|ABQ89108.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 227

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 158 RLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           RL E  LL       +A    S         ELT RE+E L  I+EG  + EIA  L I+
Sbjct: 122 RLQEGQLLFPAEVLRRAARPPSISGPVASLSELTSRELEILQLIAEGLGNREIAARLDIT 181

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            NT   ++++I+ K     R  A    +R+
Sbjct: 182 YNTAMKHVSNILAKLKVSNRMEAGLLFLRH 211


>gi|49079272|gb|AAT49874.1| PA1397 [synthetic construct]
          Length = 211

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+ + L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 146 LTERQPDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|27381401|ref|NP_772930.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27354569|dbj|BAC51555.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 274

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 8/126 (6%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWG 181
           + +  C L F    +   ++L       ++ + L  I     +L +  +    S +    
Sbjct: 130 VASEDCELVFSATPVTCSIILRDTDSEALV-ESLRHIANGHNVLPSTPSESIASREQGTN 188

Query: 182 KDFELT---GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +  LT    RE + +  +SEG ++ EI   L  +  T+  ++ +I +K     R+   A
Sbjct: 189 SESGLTTLTERERQIMRLVSEGLSNKEIGRRLNTTDGTIKVHLHNIFQKLEISNRTVLAA 248

Query: 239 YAVRNN 244
            A+  +
Sbjct: 249 LAISQH 254


>gi|299140030|ref|ZP_07033200.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598030|gb|EFI54198.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 209

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G ++  +A  L IS  TV  +I S++ K     R+ A+  A++   
Sbjct: 147 LSARETEVLRVVASGCSNKIVADRLAISEETVKGHIKSVLAKLCANDRTHAVMIAMKRGF 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|261212434|ref|ZP_05926719.1| nitrate/nitrite response regulator protein [Vibrio sp. RC341]
 gi|260838365|gb|EEX65021.1| nitrate/nitrite response regulator protein [Vibrio sp. RC341]
          Length = 200

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+  +      +        + D        LT RE++ ++ +++G  + +IA  L IS
Sbjct: 108 LLKQAMQGEKAFSESVERYLLNRDEASNPFEALTEREMQIMSEVAKGYRNRQIADRLFIS 167

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 168 ESTVKVHMKSLLKKLNVPSRTAATI 192


>gi|146343451|ref|YP_001208499.1| two-component LuxR family transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146196257|emb|CAL80284.1| putative two-component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. ORS278]
          Length = 261

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 70/178 (39%), Gaps = 15/178 (8%)

Query: 72  QKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQ-RPTELFCPVF--HTLPENITPPAGMD 127
           + L +++  D   DLV   + +     +  ++  R      PV       +  T    +D
Sbjct: 78  EDLTALLEKDSEVDLVLLDLTMPGISGFSGLIYLRAQYPAIPVVIVSASDDGATIRRSLD 137

Query: 128 ---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +    F V  +R  +  +      +  D            A +         +  
Sbjct: 138 FGASGFIPKRFGVDTLRDAIQKVMDGEVWVPPD--------TDLAAGVDPEMTKLRDRLV 189

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LT ++V  L  +S+G  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 190 TLTPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 247


>gi|300694626|ref|YP_003750599.1| transcription regulator protein, luxr family [Ralstonia
           solanacearum PSI07]
 gi|299076663|emb|CBJ36001.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 252

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP---------- 123
           +D +V+ D+P + +  +  +       +++R      PV+                    
Sbjct: 53  MDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWLATRRPVYFDAASPWEGTDPVWLEKFVK 112

Query: 124 AGMDNRYCSLTFDVAR---IRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKS 175
            G+ N      FD A           L       L   L ++     G L    A++   
Sbjct: 113 HGLRNCAADAVFDEANCVGTYFSFHALPTIAEGCLDATLRDLTPVLHGALLRAVASVEND 172

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     LT RE E    I +G+++ EIA ++  S +TV +Y++SIM KT  + R  
Sbjct: 173 LQKASQALATLTEREREVALLIGQGRSNAEIAQLVCKSESTVKHYLSSIMDKTGCENR-- 230

Query: 236 AIAYAV 241
            +  A+
Sbjct: 231 -VRVAM 235


>gi|257095255|ref|YP_003168896.1| two component LuxR family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047779|gb|ACV36967.1| two component transcriptional regulator, LuxR family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 216

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 70/207 (33%), Gaps = 25/207 (12%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV---FHTLPE 118
           ++V         L S++ SD    +V  +   E         RP  +   +        E
Sbjct: 11  MVVDDHAALRAGLRSVIDSDPGLRVVLDVPSGEVAYAQYQTLRPDTVVMDLSMEGFGGIE 70

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGL-------------------MLLFPKGRIILRDRL 159
            I      D +   L + V   R+ L                    LL    RI  R+  
Sbjct: 71  AIRRIRSRDPQAAILVYTVHNSRVLLERALEAGALGFVTKGSDIDTLLQAIKRIASRESF 130

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               +L A     F +  V + +   LT RE +    +SEG    E A IL +S  TV+N
Sbjct: 131 VSPDMLPALLDRHFPAGGVSFDR---LTQREFQVFKLLSEGHALPECADILNLSSKTVSN 187

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   I  K    + +     A+R  +V
Sbjct: 188 HFTQIRAKLGVDSPAEMARIAIRQGLV 214


>gi|258655123|ref|YP_003204279.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558348|gb|ACV81290.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 209

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + L  +++G  +  IA  LGI+  TV  ++ S+ ++     R+ A  +  R 
Sbjct: 149 LTAREEQVLRMVADGLANKMIARRLGITERTVKAHLTSVYQRIGVTDRTQAALWIQRR 206


>gi|144898192|emb|CAM75056.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 222

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 16/166 (9%)

Query: 89  CMALSEKDKYYNVLQ-RPTELFCPVFHTLP-----ENITPPAGMDNRYCSLTFDVARIRI 142
            + +   D    +   R      PV          +         N +   T     I  
Sbjct: 57  DLNMPGMDGLNGLATMRAEFPHVPVVILSGSTHPADAFHSIESGANGFIPKTMRGETIIG 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISE 199
            L L+    + +          L  Y   M +    + GK   L   + RE+E L  I +
Sbjct: 117 VLRLVLSGEKYVPP-------FLFDYHETMNRKEPENTGKSGPLAVLSAREMEILGMIVD 169

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G  +  IA    +   TV  ++ +I RK A   R+ A   A+   +
Sbjct: 170 GAPNKVIARAFELQEVTVKAHLRNIFRKIAVSNRTEAARVAILAGL 215


>gi|325970171|ref|YP_004246362.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324025409|gb|ADY12168.1| two component transcriptional regulator, LuxR family [Spirochaeta
           sp. Buddy]
          Length = 227

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 39/84 (46%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             L +      F+S          LT +E+  +  I +G ++ EI   +  S  TV NYI
Sbjct: 134 FSLFSRLATTPFRSMQEPDETFKALTAQELRIMQLIGKGLSNKEIMTEVNFSEGTVRNYI 193

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
           ++I++K   + R+     A+++ +
Sbjct: 194 SNILKKLDLRDRTQIAILAIQSGL 217


>gi|229132664|ref|ZP_04261511.1| Response regulator [Bacillus cereus BDRD-ST196]
 gi|228650791|gb|EEL06779.1| Response regulator [Bacillus cereus BDRD-ST196]
          Length = 195

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 87  VRCMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   ++  +    + +  +   L    F      +         Y     D  RIR  +
Sbjct: 39  VRMPNMNGVEATKLICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 98

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I       +N+ +S +     D  L T RE+  +  I++G ++
Sbjct: 99  KGVYNGQTVMQDVVLDKIK------SNLMESKEEESKIDKSLFTERELSIIALIAKGFSN 152

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 153 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 188


>gi|260642682|ref|ZP_05859490.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           finegoldii DSM 17565]
 gi|260621023|gb|EEX43894.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           finegoldii DSM 17565]
          Length = 200

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV N  
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|213962803|ref|ZP_03391063.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
 gi|213954460|gb|EEB65782.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
          Length = 214

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 8/189 (4%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELF 109
           L++  G  +++    +  QE  ++ +V  D   ++VR +   + E        ++ T  +
Sbjct: 31  LSDKFGHYYYVTEYIEASQELNIEKLVHPD-DLEVVRRIDKKVWEFLDTLPKEEKLTYKY 89

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
                 L            R  +   D   + +G++ L P+       R      L    
Sbjct: 90  IYEMRVLDRGKYVRMIYQMRILAFK-DDNFLAMGMIDLAPEQSANTSVRFQIKNCLTDEV 148

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                   +    D  LT RE E L    EG  S EI+  L IS +TVN +  +I+ K  
Sbjct: 149 VPFV----IESATDVLLTPREREILALAKEGMFSKEISEKLNISIHTVNRHRQNILEKLQ 204

Query: 230 TKTRSGAIA 238
                 AI 
Sbjct: 205 VDNIIEAIR 213


>gi|119717534|ref|YP_924499.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119538195|gb|ABL82812.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 512

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I+ G  ++E+A  LG+SR T   +I  I  KT   +RS A  +A+RN +
Sbjct: 447 LTQREVEVLVLIARGVATNEVAARLGVSRKTAATHIERIYAKTGACSRSTATLFALRNGL 506

Query: 246 V 246
           +
Sbjct: 507 L 507


>gi|239980938|ref|ZP_04703462.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291452801|ref|ZP_06592191.1| luxR family two component system response regulator [Streptomyces
           albus J1074]
 gi|291355750|gb|EFE82652.1| luxR family two component system response regulator [Streptomyces
           albus J1074]
          Length = 221

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 108 LFCPVFHTLPENITPPAGMD-NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +     H  P N+          +   T    R+   +  +    R I  +       LA
Sbjct: 98  VMIVTGHGRPGNLKQALAAGVRGFVPKTVSAQRLAELVRSVHAGNRYIDPE-------LA 150

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A         D     D  LT RE E L   ++G    EIA    +S  TV NY++S + 
Sbjct: 151 A---------DAIAAGDSPLTAREAEVLELAADGAPVAEIAERAALSPGTVRNYLSSAVT 201

Query: 227 KTATKTRSGAIAYAVRNN 244
           K   + R  A+  A    
Sbjct: 202 KLGAENRHSAVRLARERG 219


>gi|218296777|ref|ZP_03497483.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
 gi|218242866|gb|EED09400.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
          Length = 207

 Score = 78.9 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              ++  L+ RE E L  +++G +  E+A  LGIS  TV  Y    M K    +RS  + 
Sbjct: 140 ESAEEAPLSPREEEVLRLLAQGLSHKEVAEKLGISEKTVATYRERGMEKLGLASRSELLR 199

Query: 239 YAVRNNIV 246
           YA R   +
Sbjct: 200 YAARKGWI 207


>gi|330468505|ref|YP_004406248.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032]
 gi|328811476|gb|AEB45648.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032]
          Length = 192

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   +EG    EIA  L ++  TV N+++++MRKT T+ R  A+  A R+ 
Sbjct: 131 PLTRREAEVLRAAAEGLPLKEIARRLFLAHGTVRNHLSAVMRKTGTRNRMEAVWQARRHG 190

Query: 245 IV 246
            +
Sbjct: 191 WI 192


>gi|319780553|ref|YP_004140029.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166441|gb|ADV09979.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 219

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL+  Q+   +  D    +  +LT R+ E L  ++EG ++ E+A+ L +   TV +++  
Sbjct: 135 LLSDLQSQ--QPTDGLAERLRQLTDRQTEILRLVAEGLSNKEVALRLELQEKTVKHHMTG 192

Query: 224 IMRKTATKTRSGAI 237
           ++ K   + R+ A 
Sbjct: 193 VLSKLNVRNRTEAA 206


>gi|255038247|ref|YP_003088868.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254951003|gb|ACT95703.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 205

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG T+ +IA  L IS  TVN++  +++ K      +  I  A    +
Sbjct: 145 LTRREKEVLVLIAEGLTNPQIAEQLFISVTTVNSHRQNLLIKFEVSNTASLIKLAAGLGL 204

Query: 246 V 246
           +
Sbjct: 205 I 205


>gi|148553849|ref|YP_001261431.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148499039|gb|ABQ67293.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 878

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
              +  L+ RE E L+ + EG  +  IA  LG+S +TV  ++ +++ K     R+ A
Sbjct: 803 AATEHGLSAREGEILSLVIEGHKNKWIARRLGLSEHTVKWHVRNVLEKLGAPNRASA 859


>gi|15903856|ref|NP_359406.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|116516134|ref|YP_817220.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|168495059|ref|ZP_02719202.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|221232724|ref|YP_002511878.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|15459500|gb|AAL00617.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076710|gb|ABJ54430.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|183575076|gb|EDT95604.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|220675186|emb|CAR69771.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|332071979|gb|EGI82467.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 199

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  ++   +   LT +E+  L  I+ G ++ EIA  L +S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|229084784|ref|ZP_04217044.1| Response regulator [Bacillus cereus Rock3-44]
 gi|228698531|gb|EEL51256.1| Response regulator [Bacillus cereus Rock3-44]
          Length = 212

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 87  VRCMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   ++  +    + +  +   L    F      +         Y     D  RIR  +
Sbjct: 56  VRMPNMNGVEATKLICEETKTKPLILTTFDDDEYILEAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I       +N+ ++ +     D  L T RE+  +  I++G ++
Sbjct: 116 KGVYNGQTVMQDVVLDKIK------SNLLENKEAESKIDKSLFTERELSIIALIAKGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI SI+ KT  + R+    Y
Sbjct: 170 KEISKQLFISEGTIANYITSILGKTGLEHRTQIAIY 205


>gi|238855879|ref|ZP_04646168.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           269-3]
 gi|260665015|ref|ZP_05865865.1| two-component system response regulator [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933370|ref|ZP_06338753.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           208-1]
 gi|238831542|gb|EEQ23890.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           269-3]
 gi|260561069|gb|EEX27043.1| two-component system response regulator [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302555|gb|EFA94774.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           208-1]
          Length = 223

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 76/191 (39%), Gaps = 7/191 (3%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLP 117
           F +       E+ LD+I   + P  ++  + + + D       V  +  E+   +  T  
Sbjct: 27  FKVTATVADGEEVLDAI-KKERPDVILMDVRMPKMDGTVCTKYVKSKYPEIKVIILTTFD 85

Query: 118 ENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           ++    + +    + Y        ++   +  ++  G +I  +   ++  L +  A    
Sbjct: 86  DDDFIFSALKYGASGYLLKGVSNDQLYQAIETVYQGGAMINPNIAEKVFKLFSKMAQSNY 145

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +  V   +    +  E   +  +  G ++ EI+  L +S  TV NYI+SI+ +   + R+
Sbjct: 146 AIQVDQTESKHFSKNEWRVIQQVGLGLSNKEISAKLYLSEGTVRNYISSILSQLDLRGRT 205

Query: 235 GAIAYAVRNNI 245
               +AV+  +
Sbjct: 206 QLAIWAVQTGV 216


>gi|307328219|ref|ZP_07607397.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886053|gb|EFN17061.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 229

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   +     I   +        +I    L E+  LA ++ +   + + +   D  +T 
Sbjct: 106 GYLLKSASGDEIASAIRSAAEGETLIPASTLVEV--LARHREDARSTAEQNERLD-SMTP 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E LT +S+G  +  +A  L IS  TV  ++  I+ K   +++  A+A A    
Sbjct: 163 REQEILTLMSQGLDNRAVAERLSISYATVRTHVRRILEKLDARSQLEAVARAAEFG 218


>gi|218231951|ref|YP_002366521.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
 gi|218159908|gb|ACK59900.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
          Length = 229

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 82  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 141

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I       +N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 142 MQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 195

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 196 SEGTIANYITSVLGKTGLEHRTQIAIY 222


>gi|251794754|ref|YP_003009485.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542380|gb|ACS99398.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 200

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 33/65 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W  +  LT RE E L    EG  + EIA  L +S  TV NY++  ++K   K R  AI  
Sbjct: 133 WEAENPLTEREREVLRLAREGLPAGEIASRLFLSAGTVRNYLSEAIQKLDAKNRIDAIGI 192

Query: 240 AVRNN 244
           A +N 
Sbjct: 193 AEKNG 197


>gi|163849813|ref|YP_001637856.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661418|gb|ABY28785.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 278

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFK 174
           L        G +     +  D+   + G   LF     ++ D  W   GL+         
Sbjct: 141 LASAERVEIGEETFALLVLQDITERKRGERELFEAIEAVMADTSWFSRGLIEKLANLRQP 200

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 G    LT RE + L  I  G   D IA  L +SRNTV N+ A++ RK     R+
Sbjct: 201 GGHDGDGASPILTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRA 260

Query: 235 GAIAYAVRNN 244
            A+ +   N 
Sbjct: 261 EAVIWGRENG 270


>gi|52081142|ref|YP_079933.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52786522|ref|YP_092351.1| hypothetical protein BLi02787 [Bacillus licheniformis ATCC 14580]
 gi|52004353|gb|AAU24295.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52349024|gb|AAU41658.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 214

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L +I  G  + EIA  L IS  TV N+  ++M+K    ++   I YA++N  
Sbjct: 150 LTVREKEILRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAIKNKY 209

Query: 246 V 246
           +
Sbjct: 210 L 210


>gi|120555133|ref|YP_959484.1| two component LuxR family transcriptional regulator [Marinobacter
           aquaeolei VT8]
 gi|120324982|gb|ABM19297.1| two component transcriptional regulator, LuxR family [Marinobacter
           aquaeolei VT8]
          Length = 221

 Score = 78.9 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 9/176 (5%)

Query: 72  QKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGMD 127
           + L + V S    DL+   + +     +  ++    +   L   V     +       +D
Sbjct: 38  KALQAAVESHPDADLILLDLNMPGAHGFSGLVFMRGQYPGLPVVVVSGSEDLQVMRRSID 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                     A     L  +    + +L   +W    +A     M         +   LT
Sbjct: 98  YGASGFIPKSAP----LPTITEAIQAVLEGDVWLPEGVADKIERMQAETTDFSERLASLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++   L  ++EG  + +IA  L +S  T+  +I ++ RK   + R+ A+  A++ 
Sbjct: 154 PQQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFRKLGVRNRTQAVI-AIQQ 208


>gi|332530099|ref|ZP_08406049.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332040572|gb|EGI76948.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 224

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  I+ G +  EIA +  IS +TV  +I ++ +K A  +R  A+  A R  +
Sbjct: 161 LSAREQAVLELIARGFSYAEIARLQEISVHTVQTHIKNLYQKLAVHSRGEAVFEATRMGL 220

Query: 246 V 246
           +
Sbjct: 221 L 221


>gi|330809270|ref|YP_004353732.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377378|gb|AEA68728.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 221

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS-GAIAYAVRN 243
           +LT R+ E    I+EGKT+ EIA  L IS  TV  +++S++R      R+  A  +A R 
Sbjct: 156 KLTSRQREVWQLIAEGKTNKEIAAALEISPFTVRIHVSSLIRALNVPNRAVAAARFAGRQ 215


>gi|258620778|ref|ZP_05715813.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM573]
 gi|258586976|gb|EEW11690.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM573]
          Length = 207

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+  +      +        + D        LT RE++ ++ +++G  + +IA  L IS
Sbjct: 115 LLKQAMQGEKAFSESVERYLLNRDEGSNPFEALTEREMQIMSEVAKGYRNRQIADRLFIS 174

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 175 ESTVKVHMKSLLKKLDVPSRTAATI 199


>gi|255531519|ref|YP_003091891.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344503|gb|ACU03829.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 210

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D  LT RE + L+ +S GK   +IA  L I   TV  +I +I  K    +++ AI  A
Sbjct: 145 NPDSPLTKRETQILSLMSRGKDRSQIANELFIEIETVKTHIKNIYLKLDVNSKADAIKVA 204

Query: 241 VRNNIV 246
             N +V
Sbjct: 205 KNNRLV 210


>gi|298291984|ref|YP_003693923.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928495|gb|ADH89304.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 269

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 3/126 (2%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           + PE I         + S     A +   L  +   G       L +   L+        
Sbjct: 85  SAPEVIEALKAGVRGFISARTPPAIVFQTLYFILAGGVYFPPSALLQAQALSNSADWRRM 144

Query: 175 SYDVH---WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           S   H     +   LT R+      +  G ++  IA  L +  +TV  ++  IMRK    
Sbjct: 145 SGPAHATYRAQCSSLTERQAAVWRLLQRGHSNKVIARELAMCESTVKVHMRQIMRKLGAT 204

Query: 232 TRSGAI 237
            R+ A 
Sbjct: 205 NRTQAA 210


>gi|284044784|ref|YP_003395124.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949005|gb|ADB51749.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 429

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 16/208 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD--- 85
           R   L+             ++  +  Y  A+       +L      + ++ S+       
Sbjct: 223 RDRALSEEPAAAAFDRLRQQLLPIGRYASAA------LELAGPDAGERVLPSELAHAARA 276

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           + R +AL   D+      R +    P    L      P  + +   ++     R+     
Sbjct: 277 ISRGVALVLLDQDGVGRIRVSWRVTPAELLLSARDDGPGALTDAALAVHRTGERVAAL-- 334

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                G  +  D +   G        +             L  RE+E L  ++ G  + +
Sbjct: 335 -----GGSVSVDAVAGWGTTVTVALPLAPVESGPPNPLAVLNARELEVLAELARGGRNRQ 389

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTR 233
           IA  L I+ +TV  ++A+I+RK    +R
Sbjct: 390 IAEALAITPHTVKFHVANILRKLGVSSR 417


>gi|284993288|ref|YP_003411843.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066534|gb|ADB77472.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 222

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E LT ++ G +++ I   L IS  T   ++ ++MRK A   R+ A+    +  
Sbjct: 161 DLTAREREVLTLLARGLSNEAIGRELYISATTAKFHVGNVMRKMAVSRRAEAVYAGSKLG 220

Query: 245 IV 246
           ++
Sbjct: 221 LI 222


>gi|189461600|ref|ZP_03010385.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136]
 gi|189431710|gb|EDV00695.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136]
          Length = 202

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           M  + +   G+D  L+ RE E +  +  G T+ EIA  L IS +TV  +  +I RK    
Sbjct: 120 MNFAEEDDSGQDT-LSQREKEIIGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIH 178

Query: 232 TRSGAIAYAVRNNIV 246
           + +G   YA+ N +V
Sbjct: 179 SAAGLTIYAIVNKLV 193


>gi|188580322|ref|YP_001923767.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343820|gb|ACB79232.1| transcriptional regulator, LuxR family [Methylobacterium populi
           BJ001]
          Length = 486

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 1/130 (0%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFK 174
           L        G +     +  D+   + G   LF     ++ D  W   GL+         
Sbjct: 349 LASAERVEIGEETFALLVLQDITERKRGERELFEAIETVMADTSWFSRGLIDKLANLRQP 408

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 G +  LT RE + L  I  G   D IA  L +SRNTV N+ A++ RK     R+
Sbjct: 409 GIRDDNGANPTLTLRERQILNLICAGLDDDAIARRLNLSRNTVRNHGAALYRKLGVHKRA 468

Query: 235 GAIAYAVRNN 244
            A+ +   N 
Sbjct: 469 EAVIWGRENG 478


>gi|320158939|ref|YP_004191317.1| nitrate/nitrite response regulator protein [Vibrio vulnificus
           MO6-24/O]
 gi|319934251|gb|ADV89114.1| nitrate/nitrite response regulator protein [Vibrio vulnificus
           MO6-24/O]
          Length = 204

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++A Y     ++ DV      ELT RE + L  ++ G  + +IA  L IS +TV  ++ 
Sbjct: 123 SVVAKYLLQREENTDV----FDELTERERQILQEVARGFRNKQIADRLFISESTVKVHMK 178

Query: 223 SIMRKTATKTRSGAIA 238
           S+++K    +R+ A  
Sbjct: 179 SLLKKLKVPSRTAATV 194


>gi|118580732|ref|YP_901982.1| LuxR family transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118503442|gb|ABK99924.1| transcriptional regulator, LuxR family [Pelobacter propionicus DSM
           2379]
          Length = 201

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F   +     +  L+ +E E +  +S+G T+ EIA  L IS  TV  +I +I +KT    
Sbjct: 125 FAENNRDCVTEGNLSNKEREVVISVSQGLTNREIAARLYISEQTVKTHINNIFKKTNMAR 184

Query: 233 RSGAIAYAVR 242
           R+  +   ++
Sbjct: 185 RTQLVPLGIK 194


>gi|310830322|ref|YP_003965422.1| two component LuxR family transcriptional regulator
           [Ketogulonicigenium vulgare Y25]
 gi|308753228|gb|ADO44371.1| two component LuxR family transcriptional regulator
           [Ketogulonicigenium vulgare Y25]
          Length = 217

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 10/147 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L   D     +   +E    V   +                L   V  I  G   + P 
Sbjct: 67  DLVALDGVNVAVLTASEACDDVMAAINTGARGYILKGIGGAPLIDAVRSIAAGEGYITPT 126

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              +    L EI +          S D+       LT RE E L  ++ G ++ EIA + 
Sbjct: 127 ---LAARILTEIRVEERLSPQRSASLDL-------LTPREAEVLNMVAAGHSNKEIARLG 176

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAI 237
            +   TV +++  I+ K   + R+ A 
Sbjct: 177 DMQEKTVKHHMTRILHKLGARNRTEAA 203


>gi|293401509|ref|ZP_06645652.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305147|gb|EFE46393.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 83

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    +    ++ EIA  +GIS  TV N+I+++M K   K R+ A+   ++  
Sbjct: 21  LTPREKEVFELLIANYSTREIAKRMGISDKTVRNHISNVMLKLGVKGRAQAVVELLKLG 79


>gi|256377313|ref|YP_003100973.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921616|gb|ACU37127.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 208

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +  ++ G  + EI   L +S +TV  ++A+   KT  + R    A+A R  +
Sbjct: 146 LTPRERDVVREVARGLGNREIGDALHLSLSTVKTHLAAAQGKTGARNRVELAAWAFRARL 205

Query: 246 V 246
           V
Sbjct: 206 V 206


>gi|126665850|ref|ZP_01736831.1| adenylate/guanylate cyclase/hydrolase, alpha/beta fold family
           protein [Marinobacter sp. ELB17]
 gi|126629784|gb|EBA00401.1| adenylate/guanylate cyclase/hydrolase, alpha/beta fold family
           protein [Marinobacter sp. ELB17]
          Length = 307

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 9/161 (5%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCP--VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             + L       +V     ++  P  V H   + + P     +    L          L 
Sbjct: 148 NAVRLWRGFHEIDVRDVLQDIHVPTLVAHVEGDAMVPFELGRSLASQLPDS-----RFLP 202

Query: 146 LLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L      + L D  W +  G L  + ++   +      +  ELT R+   L  ++ G+++
Sbjct: 203 LKGANHILQLEDSSWPVFVGELRRFLSDGPATPWSSAAEVGELTPRQRMILDRVARGQSN 262

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L I+  TV N++++I  K    +R+  I  A    
Sbjct: 263 IEIAQALSIASKTVRNHVSAICSKLDISSRAQLIVQAREKG 303


>gi|118589368|ref|ZP_01546774.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118438068|gb|EAV44703.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 227

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------ 185
           ++   V     G +       +I R+ + E+        NM+   DV    D        
Sbjct: 94  AIRRAVEFGASGFIPKSHGIDVI-REAISEVMS-----GNMWTPPDVDLAADDGSGDLVQ 147

Query: 186 ----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT ++V  L  +SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  A 
Sbjct: 148 RLATLTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAAS 207

Query: 242 R 242
           +
Sbjct: 208 K 208


>gi|328551897|gb|AEB22389.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
          Length = 214

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           +R   +   +    V  R   +   +  T  +     AG+    + Y     D   I   
Sbjct: 54  IRMPGMDGIEATKAVKARYPSVKVIILTTFEDGHYIFAGLKSGADGYILKDADSDEIVAS 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     ++      ++     +        +        LT RE++    I EGK++
Sbjct: 114 LQAVCEGNMMLNPKVTVQVVKALNHMDIPAVQEEPKTNLTEILTPRELDVAKHIMEGKSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             IA  L ++  TV NY++ I+ K     R+    Y
Sbjct: 174 KRIAADLFLTEGTVKNYVSRILDKLEVSNRTELTLY 209


>gi|295096704|emb|CBK85794.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 210

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 81  DWPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSL 133
           + P DLV   + ++  D +  + + R       V     ++    AG       N + S 
Sbjct: 47  NHPIDLVILDIEMTGTDGFVLLKRIRNLNKDIKVLFLSSKSEAFYAGRAIRAGANGFVSK 106

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             D+  I   + ++         + L  I  L +               D  L+ REV  
Sbjct: 107 RKDLGEIYNAVEMILTGYSFFPSETLSFINHLGSRTGAAV---------DMPLSNREVTV 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +++ G ++ EIA  L +S  T++ + ++I  K   ++    I YA  + ++
Sbjct: 158 LRYLANGLSNKEIADQLLLSNKTISAHKSNIFSKLGVQSIVELIDYAKAHELL 210


>gi|295093014|emb|CBK82105.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Coprococcus sp. ART55/1]
          Length = 217

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G ++EL+ +E+  +  +++G  + EIA  L +S  TV NYI+SI+ K   + R+    +
Sbjct: 151 AGMEYELSSKEMNIIRLVADGLNNKEIASSLYLSEGTVRNYISSILDKLQLRDRTQLACF 210


>gi|300778185|ref|ZP_07088043.1| LuxR family two component transcriptional regulator
           [Chryseobacterium gleum ATCC 35910]
 gi|300503695|gb|EFK34835.1| LuxR family two component transcriptional regulator
           [Chryseobacterium gleum ATCC 35910]
          Length = 209

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 4/144 (2%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EI 162
           EL  P+             + N    +   +A   +G +        IL         E 
Sbjct: 64  ELIKPLKKKYSNLRIIILSVHNELPVINSTLAEGALGYIQKNASVSEILEGITAVYEGEQ 123

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L +  Q+ + K       +  +LT RE E L   ++G T++++A  L IS +TV ++  
Sbjct: 124 FLCSQTQSVLKKKSADGLNQVPKLTRREKEILAEAAKGLTTNQMAEKLFISPHTVESHRK 183

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K  T   S AI  A+   ++
Sbjct: 184 NLIEKFQTSNLSSAIRLAIEYGLI 207


>gi|226366040|ref|YP_002783823.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226244530|dbj|BAH54878.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 287

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L+ RL   GL       +             LT RE++ L+ ++ G T+ E A  L +  
Sbjct: 197 LQARLR--GLSQRLAGILRPDAVADEDPGVRLTPREIDVLSHVALGCTNGEAAQRLSVGP 254

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV +Y+ S M K   ++R  A+  A R  ++
Sbjct: 255 ETVKSYLRSAMSKLDARSRHEAVVTARRLGLL 286


>gi|225351362|ref|ZP_03742385.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157706|gb|EEG70989.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 220

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 11/199 (5%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP----- 105
           +L+  + A+    + W  +  +        D P  L+  + +   D      +       
Sbjct: 16  SLSTILKATGTADIAWTAYDGETAVGQYEEDNPDVLLIDVQMPVMDGLAASRKIIDAHPN 75

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            ++           I     +  +   +  DV+ +   +  +     ++    L ++ + 
Sbjct: 76  AKILILTTFADESYIAEALEIGTKGYLIKQDVSSVIPAVQSVMAGQVVMGAQVLRKLHVN 135

Query: 166 AAYQANMFKSY------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            A Q     S       +   G+   LT RE + +  ++EG  + EIA  L +S  TV N
Sbjct: 136 KASQTQRHVSQAGDNGENRFSGRFANLTERERDVMQLVAEGYDNREIAAKLFLSEGTVRN 195

Query: 220 YIASIMRKTATKTRSGAIA 238
            I+ I+ KT    R+    
Sbjct: 196 RISDILAKTNVTNRTKLAV 214


>gi|120436410|ref|YP_862096.1| LuxR family transcriptional regulator protein [Gramella forsetii
           KT0803]
 gi|117578560|emb|CAL67029.1| LuxR family transcriptional regulator protein [Gramella forsetii
           KT0803]
          Length = 347

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DF  T RE E +  + +G  + EI+  L IS  T+  + ++I+++T ++T   ++ YA+ 
Sbjct: 279 DFSFTKREKEIIGLLCKGYKTKEISDTLFISPKTIEKHRSNIIKRTNSETILESVIYAIN 338

Query: 243 NNIV 246
           +N+V
Sbjct: 339 HNLV 342


>gi|113867311|ref|YP_725800.1| ATP-dependent transcription regulator LuxR [Ralstonia eutropha H16]
 gi|113526087|emb|CAJ92432.1| ATP-dependent transcriptional regulator,MalT-family [Ralstonia
           eutropha H16]
          Length = 947

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EL+ RE + +  + +G  + +IA  LG+S  TV  ++ +I RK    +R  A+A 
Sbjct: 878 ELSDREADVVRLLGQGLPNKKIARTLGLSPETVKWHLRNIFRKLGVSSRDEAVAR 932


>gi|289575183|ref|ZP_06455410.1| predicted protein [Mycobacterium tuberculosis K85]
 gi|289539614|gb|EFD44192.1| predicted protein [Mycobacterium tuberculosis K85]
          Length = 68

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +T  E+E    + EG ++ EI V L IS  TV++++  +  K    +R      A R  
Sbjct: 1   MTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQLAQQAARRG 59


>gi|257067834|ref|YP_003154089.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256558652|gb|ACU84499.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 211

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           P  +    F              + +      V R+   +  +    R +  +       
Sbjct: 86  PRIIVLTTFGRAGYLRRTMEAGAHGFMVKDTPVERLVDAIRRVHQGLRAVDPE------- 138

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LAA    +  S          LT +E E L  ++ G ++ +IA  L +S  TV N+++++
Sbjct: 139 LAAQSLAVGPS---------PLTAKETEVLQTVATGASTAQIAQTLFLSEGTVRNHLSAV 189

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K     R+ A+  A  N  +
Sbjct: 190 IGKLGVTNRAEAVRAASDNGWI 211


>gi|50841545|ref|YP_054772.1| two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289424302|ref|ZP_06426085.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289427423|ref|ZP_06429136.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129584|ref|YP_003580247.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|50839147|gb|AAT81814.1| two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289154999|gb|EFD03681.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289159353|gb|EFD07544.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291377074|gb|ADE00929.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313764963|gb|EFS36327.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771147|gb|EFS37113.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313792510|gb|EFS40596.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803511|gb|EFS44693.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806915|gb|EFS45413.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811827|gb|EFS49541.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814163|gb|EFS51877.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815476|gb|EFS53190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817698|gb|EFS55412.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821475|gb|EFS59189.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824580|gb|EFS62294.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826251|gb|EFS63965.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829041|gb|EFS66755.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313832822|gb|EFS70536.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313839682|gb|EFS77396.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916271|gb|EFS80102.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917541|gb|EFS81372.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921874|gb|EFS85705.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926277|gb|EFS90108.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314955212|gb|EFS99617.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959216|gb|EFT03318.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961718|gb|EFT05819.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964222|gb|EFT08322.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969024|gb|EFT13122.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314975255|gb|EFT19350.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977670|gb|EFT21765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314985145|gb|EFT29237.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314990454|gb|EFT34545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078871|gb|EFT50889.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315081685|gb|EFT53661.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083141|gb|EFT55117.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086668|gb|EFT58644.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315097105|gb|EFT69081.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099710|gb|EFT71686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102251|gb|EFT74227.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315107664|gb|EFT79640.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|315109807|gb|EFT81783.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327332558|gb|EGE74293.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327333731|gb|EGE75448.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327334616|gb|EGE76327.1| two-component system response regulator [Propionibacterium acnes
           HL097PA1]
 gi|327444410|gb|EGE91064.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327446663|gb|EGE93317.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448894|gb|EGE95548.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327454307|gb|EGF00962.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456372|gb|EGF03027.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327457356|gb|EGF04011.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328756067|gb|EGF69683.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757917|gb|EGF71533.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328758912|gb|EGF72528.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328759757|gb|EGF73353.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
 gi|332674453|gb|AEE71269.1| two-component response regulator [Propionibacterium acnes 266]
          Length = 218

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 78  VSSDWPFDL-VRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           V    P D+ +  + + + D       +   P +    +  T   +    A +       
Sbjct: 45  VLRRMPVDVALMDIRMPQMDGVEATRRITASPLDTKVLILTTFDLDEYVYAALKAGASGF 104

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192
               AR    L  +                 L  +      +      K    LT RE E
Sbjct: 105 LLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLSVLTDREKE 164

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    ++
Sbjct: 165 VLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL 218


>gi|53712701|ref|YP_098693.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60680860|ref|YP_211004.1| putative transcriptional regulatory protein [Bacteroides fragilis
           NCTC 9343]
 gi|253563324|ref|ZP_04840781.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|265762790|ref|ZP_06091358.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|52215566|dbj|BAD48159.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60492294|emb|CAH07059.1| putative transcriptional regulatory protein [Bacteroides fragilis
           NCTC 9343]
 gi|251947100|gb|EES87382.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|263255398|gb|EEZ26744.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|301162406|emb|CBW21951.1| putative transcriptional regulatory protein [Bacteroides fragilis
           638R]
          Length = 225

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+
Sbjct: 154 EDRLLTPTEKIILKEIASGKTTKEIAAEKHLSFHTINSHRKNIFRKLGVNNVHEATKYAM 213

Query: 242 RNNIV 246
           R  IV
Sbjct: 214 RAGIV 218


>gi|99081053|ref|YP_613207.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037333|gb|ABF63945.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040]
          Length = 251

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 87/245 (35%), Gaps = 28/245 (11%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK-----LDSIVSSD 81
            T S+ L ++                    G    LL  + LF+ +       D ++ ++
Sbjct: 1   MTLSEYLQQLTQFKTIEELWRAHVQQMSRYGFDR-LLYGYTLFKTRTSLGDPDDFVILTN 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY----------- 130
              + ++         +  +L    E        + + +     +D +            
Sbjct: 60  HCPEYLQGFLADGLYAHAPMLTWALENEGHASWRVSQEMAAQGLLDKQARKVQDFNQSMG 119

Query: 131 ----CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVH 179
                +++F+ A  R    +       + +D + +I        +L    A++      +
Sbjct: 120 VHAGYTISFNSASERFKGAISLAARADLDQDGIDQIWAEHGADIVLMNNVAHLKILTLPY 179

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT R+ E L W+ +GKT+ +IA+++G++  T+  ++       + +T + A+  
Sbjct: 180 HAPKRGLTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARATLSVETTAQAVLK 239

Query: 240 AVRNN 244
           A  +N
Sbjct: 240 AALHN 244


>gi|269957966|ref|YP_003327755.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269306647|gb|ACZ32197.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 876

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             +  ELT RE E     + G T+ +IA  L IS  TV N++  + RK     R+ 
Sbjct: 814 AAEGAELTAREDEIARLAASGMTNQDIARRLLISVRTVENHLHRVFRKLGVDNRAE 869


>gi|262164972|ref|ZP_06032710.1| nitrate/nitrite response regulator protein [Vibrio mimicus VM223]
 gi|262027352|gb|EEY46019.1| nitrate/nitrite response regulator protein [Vibrio mimicus VM223]
          Length = 220

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+  +      +        + D        LT RE++ ++ +++G  + +IA  L IS
Sbjct: 128 LLKQAMQGEKAFSESVERYLLNRDEESNPFEALTEREMQIMSEVAKGYRNRQIADRLFIS 187

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 188 ESTVKVHMKSLLKKLDVPSRTAATI 212


>gi|332188808|ref|ZP_08390518.1| sigma-70, region 4 family protein [Sphingomonas sp. S17]
 gi|332011161|gb|EGI53256.1| sigma-70, region 4 family protein [Sphingomonas sp. S17]
          Length = 239

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 15/209 (7%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIV--SSDWPFDLVRCMALSEKDKYYNVLQRPT 106
           + A     G   F++       +  +D I+    DW F     +  +       V +   
Sbjct: 29  VRAYAAPFGYGRFVIYTAPPPGDGAVDRILWLEGDW-FGNGHRVNAATYLARCPVNRHVL 87

Query: 107 ELFCPVFHTLPENIT--------PPAGMDNRYCSLTFDVARIRIGLMLLFPK---GRIIL 155
           E   P F T               P G       +         G +    +     I  
Sbjct: 88  ETDRPFFWTKNGTADAETYRVVPHPKGPGIHGLQVPIFSHVGLAGAVSFGGRTIDSAIDT 147

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R  L  +G  A + A       V      +L+ RE E + WI+ G+   ++A +LG+S  
Sbjct: 148 RLALTLVGTAAFHVAERLAGSVVAHAMP-QLSAREREVIRWIASGRRQADVAALLGLSER 206

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T+ N++  I  +    + + AI   VR+ 
Sbjct: 207 TIENHLRRIRNRLGAASTAQAIHLLVRSG 235


>gi|307308356|ref|ZP_07588061.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|306901157|gb|EFN31764.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 213

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P  + +L + +       A +            +   LT RE E    I  GK + +IA 
Sbjct: 107 PTPKEVLLETIGRALRRYALRRLEQDRKHALRRRLANLTPREFEVFGLIVRGKLNKQIAQ 166

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LG S  TV  +  ++M K  T++ +  ++ A R  +V
Sbjct: 167 ALGTSERTVKAHRHNLMEKLGTRSLAETVSIAERLGLV 204


>gi|302547687|ref|ZP_07300029.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465305|gb|EFL28398.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 235

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 3/137 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL---WEIGLLAAY 168
           V+  L          D     LT  V     G  L+ P   + L  ++         +  
Sbjct: 93  VYRALRNGACGFLLKDGAPGLLTEAVRAAAAGNSLISPSVTVRLLAQMAPHRHGPSPSEA 152

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +              LT RE++ +  ++ G+T++E+A  L ++ +TV  ++ ++ RK 
Sbjct: 153 RPDRTAGGGGQDALTEPLTQRELDVVRRVARGRTNEEVAADLYVTLSTVKTHLGNVQRKL 212

Query: 229 ATKTRSGAIAYAVRNNI 245
           A + R    A+A  N I
Sbjct: 213 AARNRVEIAAWAWENGI 229


>gi|163816627|ref|ZP_02207990.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759]
 gi|158447884|gb|EDP24879.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759]
          Length = 217

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +  +   V  +  G  +   +    L D L      +        +        +E++ +
Sbjct: 106 FECIAPAVNAVYNGQTVFGEEIIGKLPDLLGHSESHSTDVERSPFAD-----TQYEISSK 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E++ +  +++G  + EIA  L +S  TV NYI+SI+ K   + R+    +  +N
Sbjct: 161 EMDIIRLVADGLNNKEIASRLFLSEGTVRNYISSILDKLCLRDRTQLACFFYKN 214


>gi|94971093|ref|YP_593141.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553143|gb|ABF43067.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 233

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR----YC 131
            ++ +D    L+  +  +++      +++       +F T+  +    A    R    Y 
Sbjct: 69  DVIIADVGMPLLNGLDAAQQ------VKQKLPTVKIIFLTMNPDPDIAAEAFRRGASAYL 122

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             T   + +   +  +      +      E+  L+ +Q            +  +LT R+ 
Sbjct: 123 VKTSAASEVVASVREVLRGKTYVSPTIPREMIDLSLWQHKKL------VDETHKLTDRQR 176

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E L  ++EGK   E+A IL ++  TV  +   IM    TK  +  + YAVRN 
Sbjct: 177 EVLQLLAEGKGMKEVAAILNMTTRTVAFHKYRIMEVLGTKNNADLVKYAVRNR 229


>gi|87199682|ref|YP_496939.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135363|gb|ABD26105.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 307

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 157 DRLWEIGLLAAYQANMF---------KSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           D   E+ ++A Y+             K+      +   LT RE E L W S GK++  I+
Sbjct: 209 DGTMELVVIAQYRGQEVLIRVNELNPKADIALLQQKLGLTDREAEVLLWTSYGKSNATIS 268

Query: 208 VILGISRNTVNNYIASIMRKTATKTR 233
            +L IS  TV  ++  I  K   +TR
Sbjct: 269 EVLAISPRTVQKHLERIYEKLGIETR 294


>gi|332523779|ref|ZP_08400031.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332315043|gb|EGJ28028.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 198

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 138 ARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREV 191
            +      L       +L+DR + E+           K Y     ++       L+ RE 
Sbjct: 84  RKGYFQRALAAHVDGYVLKDRSISELMQTIHSVLEGRKEYSPELIEEVTFSTNPLSPREQ 143

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E ++ + +G ++ EIA  L +S  TV NY+  +  K     R+ A 
Sbjct: 144 EVMSLVVQGASNHEIAQKLFLSNGTVRNYLTCVFTKLNANNRTEAA 189


>gi|312887958|ref|ZP_07747542.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311299439|gb|EFQ76524.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 222

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 67/177 (37%), Gaps = 11/177 (6%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDN 128
            +L  +   D     +  + L+   +     ++  E+   +     ++           +
Sbjct: 49  PRLPHVTLLDMSMPGMNGIELNSILQ-----EKYPEVKIVILSVNLQDRLISKMITEGAD 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     D   +   +  ++  G  I    L  +  L  Y  +  + +        ++T 
Sbjct: 104 AYLVKNCDKDELITAIQAVYKAGFYI---NLQTMQALQHYSDSKSRQHQYLNATATDITR 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L  I +  ++ EIA  L +S  TV  +  +++ KT  +  +G + +AV++ +
Sbjct: 161 REKEVLEMICKELSAAEIASKLYLSVRTVEGHRNNLILKTGARNTAGLVIFAVKSGL 217


>gi|256377649|ref|YP_003101309.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921952|gb|ACU37463.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 189

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 10/122 (8%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           G     C +   ++R+  G+        ++    L  +                   +  
Sbjct: 78  GASAVLCPVASPLSRLVAGVHSALHGDGVVPYQALVRL----------LGRSGEGVVQVE 127

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT ++   L  +++G  +  IA  L  S +TV N I  +  +   + R+ A+A+AVR  
Sbjct: 128 ALTAKQTAVLQLMADGLGNSAIAAALACSEHTVKNVIYELTARLRARNRAHAVAHAVRLG 187

Query: 245 IV 246
           +V
Sbjct: 188 LV 189


>gi|254477132|ref|ZP_05090518.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
 gi|214031375|gb|EEB72210.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
          Length = 204

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  +  G ++ EIA  L +   T+  ++ ++ RK   K R+ A   A    
Sbjct: 143 KLSPREIEVLDGLCRGLSNKEIARELELQEVTIKLHVRTLCRKLDAKNRTQAALTAKEAG 202

Query: 245 I 245
           +
Sbjct: 203 L 203


>gi|196233033|ref|ZP_03131881.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222840|gb|EDY17362.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 212

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  ++ G ++ EI   LG++  T   ++ +I+ K     R+ A+  A +  +
Sbjct: 147 LSPREVETLDLLARGFSNREIGSALGVTERTAKAHVQAILVKLEAADRAEAVDAAYKRGL 206

Query: 246 V 246
           +
Sbjct: 207 L 207


>gi|167574161|ref|ZP_02367035.1| probable two-component response regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 192

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  ISEG  + +IA  L I+  TV  +  ++MRK      +    +A R 
Sbjct: 130 VALTPRERQVLKLISEGCRNRDIAEKLTITIKTVETHRLNLMRKLDAHNAAELANWAHRL 189

Query: 244 NI 245
            +
Sbjct: 190 GL 191


>gi|157961641|ref|YP_001501675.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157846641|gb|ABV87140.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC
           700345]
          Length = 211

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        LT RE E L  +  G T+ +IA  L +S +T+  ++    RK    +R  A
Sbjct: 139 DPALDNVDTLTIREREVLQVLRNGSTNIDIANRLFVSESTIKTHLYRAFRKIGVSSRGQA 198

Query: 237 IAYA 240
           IA+A
Sbjct: 199 IAWA 202


>gi|289642641|ref|ZP_06474782.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507550|gb|EFD28508.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 228

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE + L  I+EG T+ +IA  + ++  TV N ++SI+ K    +R+ A  +A +
Sbjct: 169 LSERERQILGLIAEGLTNRQIASRIHLAEKTVKNNVSSILEKLGLTSRTQAAVFATK 225


>gi|229521390|ref|ZP_04410809.1| DNA-binding response regulator LuxR family [Vibrio cholerae TM
           11079-80]
 gi|229341488|gb|EEO06491.1| DNA-binding response regulator LuxR family [Vibrio cholerae TM
           11079-80]
          Length = 216

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    Y
Sbjct: 149 ANKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQY 208

Query: 240 AVRNNIV 246
           A+++ ++
Sbjct: 209 ALQHGLL 215


>gi|254425747|ref|ZP_05039464.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188170|gb|EDX83135.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 212

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 34/59 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + + RE++ L  + +GK + EIA  L ++  T+ N++ +I  +   + R+ A  +A ++
Sbjct: 151 QFSERELDILKQLGQGKRNREIAANLNLTEGTIKNHLTNIFCQLDVRDRTQAALWAHQH 209


>gi|153212273|ref|ZP_01948061.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|124116651|gb|EAY35471.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
          Length = 216

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA
Sbjct: 150 NKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYA 209

Query: 241 VRNNIV 246
           +++ ++
Sbjct: 210 LQHGLL 215


>gi|120401373|ref|YP_951202.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954191|gb|ABM11196.1| putative GAF sensor protein [Mycobacterium vanbaalenii PYR-1]
          Length = 341

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 13/197 (6%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIV--SSDWPFDLVRCMA--LSEKDKYYNVLQRP 105
             L +  G + +++    +  E  +  ++  SS  P  ++  +   L         L   
Sbjct: 144 RPLVDRAGTTQYVVA--PVVVEGAVIGLIHASSAAPGRVLTDLDRDLLRMFADGVGLVYE 201

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
                         +T       R       +A   +G      +  ++  D        
Sbjct: 202 RAALAERSERQRCAVTEVCDAAVRSFDEVNPIAAFGLG-----SEPGLVSPDGDSVPAPF 256

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A    +  +       +   LT RE E L  ++ G T+ ++A  L ++ +TV +++  I+
Sbjct: 257 AGICES--RGAGRGGTRLARLTAREREVLALLASGATNAQLADRLTVAESTVKSHVKHIL 314

Query: 226 RKTATKTRSGAIAYAVR 242
            K     R+ AIA  +R
Sbjct: 315 HKLGAGNRAAAIACYLR 331


>gi|254465085|ref|ZP_05078496.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium Y4I]
 gi|206685993|gb|EDZ46475.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium Y4I]
          Length = 251

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 5/141 (3%)

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG---RIILRDRLWEIGLLAA 167
           P    L + +    G       +     +  +  +           ++     +  L+A 
Sbjct: 109 PAREFLKDAMEHGVGNQGYAIPIRGPNGQFALFTLSHNCGDAAWEKLVAKYNRDFILVAH 168

Query: 168 YQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           Y        +     +    L+ REV+ LT ++ G +  ++A  L IS +T+  YI S  
Sbjct: 169 YFNRKVLELEPSRTAEHAQPLSPREVDALTLLAIGYSRAQVAQTLAISEHTLRVYIESAR 228

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K      + AIA AV   ++
Sbjct: 229 FKLGAINTTHAIARAVSLGLI 249


>gi|297580300|ref|ZP_06942227.1| nitrate/nitrite response regulator NarP [Vibrio cholerae RC385]
 gi|297535946|gb|EFH74780.1| nitrate/nitrite response regulator NarP [Vibrio cholerae RC385]
          Length = 207

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L+  +      +        + D        LT RE++ ++ +++G  + +IA  L IS
Sbjct: 115 LLKQAMQGEKAFSESVERYLLNRDEASNPFDTLTEREMQIMSEVAKGYRNRQIADRLFIS 174

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 175 ESTVKVHMKSLLKKLDVPSRTAATI 199


>gi|258652795|ref|YP_003201951.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556020|gb|ACV78962.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 144

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            W +   L  RE E L    +G ++ +IA  L +S  TV NY++    K     R  A  
Sbjct: 77  AWSEPDPLADREREVLRLTEDGLSNADIARRLHLSEGTVRNYLSEATHKLGAGNRIAAAR 136

Query: 239 YAVRNN 244
            A    
Sbjct: 137 QARERG 142


>gi|227833657|ref|YP_002835364.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184663|ref|ZP_06044084.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454673|gb|ACP33426.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 215

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 3/166 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  + K +       P  +    F T    +         +   T 
Sbjct: 49  DVVLMDIRMPVMDGIEAAGKLRASAP-DIPVVMLT-AFDTDEFIVDALHAGAMGFLLKTI 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   + + +       +++    L  +  L   +    +   +       L+ RE E   
Sbjct: 107 EPEGLVLAVRAAATGQQLLSPKALKNLLALKRPEPAPAEPEALEARPLEGLSQRENEVAQ 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +++G  + EIA  L +S  TV  +I  I+ K     R   IA AV
Sbjct: 167 LVAQGLDNQEIAGQLYVSVTTVKTHIKHILDKLGGTNRVH-IAIAV 211


>gi|255035483|ref|YP_003086104.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254948239|gb|ACT92939.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 207

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 38/85 (44%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +I L A  Q  + ++      +   LT RE E L  I +G T+ +IA  L IS +TV ++
Sbjct: 121 QIYLCAETQKALNEAPGTEPKEIPRLTRREKEILELIGQGYTTQQIAAELFISTHTVESH 180

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
             ++  K      +  +  A    +
Sbjct: 181 RKNLKEKFGVPNTATVVRMAAELGL 205


>gi|53711893|ref|YP_097885.1| LuxR family transcriptional regulator [Bacteroides fragilis YCH46]
 gi|52214758|dbj|BAD47351.1| LuxR family transcriptional regulator [Bacteroides fragilis YCH46]
          Length = 198

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--- 183
             +   L  D  + ++  + +    +   +     + L      + +   D+        
Sbjct: 71  KRKTIVLAGDSHQFQLSGVPILNIYQAEEQLVKDILKLHQHAHHDGYPVKDMPPTPPTTG 130

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+ RE+E L  I++G  + EIA  L I   TV  +  +I  K   K+ SG   YAV N
Sbjct: 131 HELSAREIEVLVLITKGLINKEIADKLNIGLTTVITHRKNITEKLGIKSVSGLTIYAVMN 190

Query: 244 NIV 246
             V
Sbjct: 191 GYV 193


>gi|95928587|ref|ZP_01311334.1| two component transcriptional regulator, LuxR family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135377|gb|EAT17029.1| two component transcriptional regulator, LuxR family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 263

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF +L           +    L   +  +  G   +  +             ++  Y  +
Sbjct: 123 VFESLKAGARGYVLKSSSIDELVNAIREVHQGGYFISAELNP---------AIIQFYLDH 173

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + D        LT RE +    ++ GK + EI+ IL IS  TV  + A++ +K +  
Sbjct: 174 RENASDQLSEYQL-LTDREKQVFRLLANGKQTHEISEILCISPKTVAKHRAAVKKKLSLN 232

Query: 232 TRSGAIAYAVRNNIV 246
           T +    YA++  ++
Sbjct: 233 TTAEMAKYAIQIGVI 247


>gi|293115534|ref|ZP_06604529.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM
           2876]
 gi|292809348|gb|EFF68553.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM
           2876]
          Length = 211

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 14/170 (8%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTF 135
             P  L+  + ++  D      Q   +     +      +  E IT       +   L  
Sbjct: 49  HKPDILLSDIRMNGMDGTVAAAQILKKNPDARILFLTTFSDDEYITKALKYGVKGYILKQ 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVEC 193
           D   I   +  ++    +  R+ +  +        N+    +    K F   +T +E E 
Sbjct: 109 DFEGIVPAIKAVYKGQSVFGREIVGRLP-------NITGENESRESKFFGKGITEKEFEI 161

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +  +++G ++ EIA  L +   TV NY +SI+ K   + R+  + Y  +N
Sbjct: 162 IKLVADGLSNKEIASRLYLGEGTVRNYFSSILDKLELRDRTQLVVYYYKN 211


>gi|257484713|ref|ZP_05638754.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 214

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 1/161 (0%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            ++ +   E  ++   +Q   ++     HT P+ I     +  R   L    A      +
Sbjct: 51  WMKSVDGLEALEHLLKVQPHCKVLILSMHTDPDMIMRALDIGARGYLLKDTTATELEQAL 110

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                    L   +    +  A +            + + LT R++E L  I  GK++ E
Sbjct: 111 EALRNNERYLSPAIAHTVIERALRGTRSDRAQAAKER-YHLTARQLEILRLIVRGKSTRE 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  LG+S  T+  + + +M++      +G + + VR  I+
Sbjct: 170 IADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRERII 210


>gi|78213620|ref|YP_382399.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9605]
 gi|78198079|gb|ABB35844.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9605]
          Length = 233

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 49/109 (44%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           +  RIG   L    R +  D      ++A    +   S D        L+ RE + L  +
Sbjct: 114 SHERIGNGGLLSVLRAMESDGSHMDSVIAGVANHDRGSRDAAHPLSDVLSLREEDVLRGL 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G ++ EIA  L +S  T  + +  ++RK   K+R+ A+  A + N+V
Sbjct: 174 CKGLSNQEIADQLHLSIETTKHCVTGLLRKLDAKSRTQAVLIAFQRNLV 222


>gi|16263379|ref|NP_436172.1| Two-component response regulator [Sinorhizobium meliloti 1021]
 gi|307321169|ref|ZP_07600572.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|14524065|gb|AAK65584.1| Two-component response regulator [Sinorhizobium meliloti 1021]
 gi|306893160|gb|EFN23943.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
          Length = 213

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P  + +L + +       A +            +   LT RE E    I  GK + +IA 
Sbjct: 107 PTPKEVLLETIGRALRRYALRRLEQDRKHALRRRLANLTPREFEVFGLIVRGKLNKQIAQ 166

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LG S  TV  +  ++M K  T++ +  ++ A R  +V
Sbjct: 167 ALGTSERTVKAHRHNLMEKLGTRSLAETVSIAERLGLV 204


>gi|118581564|ref|YP_902814.1| two component LuxR family transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118504274|gb|ABL00757.1| two component transcriptional regulator, LuxR family [Pelobacter
           propionicus DSM 2379]
          Length = 203

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQAN-------MFK 174
            G+  R   LT     +  G  +       IL+D  +E  +  L    A        +  
Sbjct: 72  LGLATRAIILTMHDDPLMYGRAVSAGAHGFILKDDAYEELLSALRTVAAGGTAISRAIQH 131

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +         ELT RE E L  I+ G T+  IA  LGIS  TVNN+  ++M K    + +
Sbjct: 132 AAIEPEPPVAELTEREREILGLIAHGCTNRMIAQHLGISIKTVNNHRTNLMGKLNLHSTA 191

Query: 235 GAIAYAVRNN 244
             + Y++   
Sbjct: 192 ELVRYSLLTG 201


>gi|320086683|emb|CBY96454.1| Nitrate/nitrite response regulator protein homolog [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 215

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 20/197 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLV-RCMALSEKDKYYNVLQRPTELFCPVFHTLPE-- 118
           L+V       + +  ++  D  FB+V      +      N ++    L       L    
Sbjct: 10  LIVDDHPLMRRGIRQLLELDPAFBVVAEAGDGASAIDLANRIEPDLILLDLNMKGLSGLD 69

Query: 119 --NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA------ 170
             N     G+  +   LT   +   I  ++       +L+D   E+ L A  +       
Sbjct: 70  TLNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKV 129

Query: 171 ---------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
                       + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I
Sbjct: 130 FSDRVNEYLRERERFGAQEDPFRILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHI 189

Query: 222 ASIMRKTATKTRSGAIA 238
            +++R    ++R  A  
Sbjct: 190 RNLLRNLNVRSRVAATI 206


>gi|319644893|ref|ZP_07999126.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2]
 gi|317392702|gb|EFV73496.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2]
          Length = 214

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L +I  G  + EIA  L IS  TV N+  ++M+K    ++   I YA++N  
Sbjct: 150 LTVREKEILRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAIKNKY 209

Query: 246 V 246
           +
Sbjct: 210 L 210


>gi|291300276|ref|YP_003511554.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM
            44728]
 gi|290569496|gb|ADD42461.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
            DSM 44728]
          Length = 1013

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 138  ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            A +R    +    G   L +R+  +              +   G+   LT REV+ L  +
Sbjct: 906  APLREAATIAAKLGARPLAERVARLAAQVGIAVGEAPQANPGPGR--GLTAREVDVLRLL 963

Query: 198  SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++G ++ +IA  L IS +T   +++ I+ K    +R  A A A R
Sbjct: 964  AKGLSNRQIAGELFISVSTAGVHVSRILAKLEVASRGEAAALAHR 1008


>gi|262402371|ref|ZP_06078932.1| DNA-binding response regulator LuxR family [Vibrio sp. RC586]
 gi|262351153|gb|EEZ00286.1| DNA-binding response regulator LuxR family [Vibrio sp. RC586]
          Length = 212

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    Y
Sbjct: 145 ANKPNPLSRREEAILRMVAQGCSSKKIASLLNISYRTVETHRQNIKHKLDIHSTAELAQY 204

Query: 240 AVRNNIV 246
           A+++ ++
Sbjct: 205 ALQHGLL 211


>gi|237713296|ref|ZP_04543777.1| luxR family transcriptional regulator [Bacteroides sp. D1]
 gi|237718016|ref|ZP_04548497.1| luxR family transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|262406672|ref|ZP_06083221.1| luxR family transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|293369987|ref|ZP_06616554.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|294646076|ref|ZP_06723741.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294810493|ref|ZP_06769146.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|299147711|ref|ZP_07040774.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 3_1_23]
 gi|229446535|gb|EEO52326.1| luxR family transcriptional regulator [Bacteroides sp. D1]
 gi|229452657|gb|EEO58448.1| luxR family transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|262355375|gb|EEZ04466.1| luxR family transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|292634905|gb|EFF53427.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|292638647|gb|EFF57000.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294442257|gb|EFG11071.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298513894|gb|EFI37780.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 3_1_23]
          Length = 200

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  K   K+ SG   YAV N  
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|169350169|ref|ZP_02867107.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552]
 gi|169292952|gb|EDS75085.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552]
          Length = 67

 Score = 78.5 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E  T +    ++ EIA IL IS  TV N+I+++++K    +R  A+   VR
Sbjct: 2   NIILTPREREVFTLLINNHSTKEIAQILKISEKTVRNHISNVIQKLGVDSRIQAVFELVR 61

Query: 243 NN 244
             
Sbjct: 62  LK 63


>gi|323500078|ref|ZP_08105032.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323314934|gb|EGA67991.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 212

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 20/210 (9%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
                 ++M    + +G +   L   ++ +E   D +V  D    ++  +  +   +  N
Sbjct: 18  DGFMARLQMEPEIDVIGTASNGLEAVEVVKELNPD-VVLMDVSMPIMNGIEATSMIREDN 76

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGRII---LR 156
              +   +     H   E I     +    Y       +++   +  +          + 
Sbjct: 77  PEAK---VLMLTMHDNREYIMKVMQVGAVGYMLKEICASKMVQAIKTVNQGSTYFCESVT 133

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
             L+   ++ A Q            K   L+ RE   L  +++G +S ++A +L IS  T
Sbjct: 134 QTLFSQQVIPAAQ------------KPNPLSRREEAVLKLVAQGHSSKKVASMLNISYRT 181

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  +  +I  K    + +    YAV   +V
Sbjct: 182 VETHRQNIKHKLDIHSTAELAKYAVEQGLV 211


>gi|70730322|ref|YP_260061.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344621|gb|AAY92227.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 208

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++EG T+ EIA  L +S  TV+ +  +I+ K    +    +  A +N +
Sbjct: 148 LTNRELEVLKLLAEGLTNLEIAEKLHLSNKTVSGHKINILSKLGVTSVVDLVNIARQNEL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|60680121|ref|YP_210265.1| LuxR family transcriptional regulator [Bacteroides fragilis NCTC
           9343]
 gi|265765259|ref|ZP_06093534.1| LuxR family transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|60491555|emb|CAH06307.1| putative LuxR family transcriptional regulator [Bacteroides
           fragilis NCTC 9343]
 gi|263254643|gb|EEZ26077.1| LuxR family transcriptional regulator [Bacteroides sp. 2_1_16]
          Length = 199

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--- 183
             +   L  D  + ++  + +    +   +     + L      + +   D+        
Sbjct: 72  KRKTIVLAGDSHQFQLSGVPILNIYQAEEQLVKDILKLHQHAHHDGYPVKDMPPTPPTTG 131

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+ RE+E L  I++G  + EIA  L I   TV  +  +I  K   K+ SG   YAV N
Sbjct: 132 HELSAREIEVLVLITKGLINKEIADKLNIGLTTVITHRKNITEKLGIKSVSGLTIYAVMN 191

Query: 244 NIV 246
             V
Sbjct: 192 GYV 194


>gi|290962908|ref|YP_003494090.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260652434|emb|CBG75567.1| Putative transcriptional regulator [Streptomyces scabiei 87.22]
          Length = 289

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L+ ++ G+T+ ++A  LG+S  TV +Y+ S MR+    TR   +A A R  +
Sbjct: 228 LSSRELDVLSCVALGRTNADVAEELGLSAETVKSYLRSAMRRLGCHTRMETVATARRLGL 287

Query: 246 V 246
           +
Sbjct: 288 L 288


>gi|302879092|ref|YP_003847656.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302581881|gb|ADL55892.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 491

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 16/170 (9%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVL-QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           + S  P+D+   + L   D     + +R   ++    + L    T     D +   L   
Sbjct: 335 LKSKIPYDIEHRLLL--TDGRIKYVHERCETVYDSGGNPLRSVGTVQDISDRKRLKLEGT 392

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
               RI  ++L          ++ +  + A  + N     +   GK   L+ R ++ +  
Sbjct: 393 DMLRRIESLIL----------QMDDRTVAATPEENAIVRSEEGAGK---LSRRHLDVIGL 439

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G TS +IA  L IS+ TV  +  ++MRK    + +   AYA++N IV
Sbjct: 440 IAAGLTSAQIAARLNISQTTVITHRRNLMRKLGLHSAAELTAYAIKNKIV 489


>gi|237745463|ref|ZP_04575943.1| two-component system response regulator [Oxalobacter formigenes
           HOxBLS]
 gi|229376814|gb|EEO26905.1| two-component system response regulator [Oxalobacter formigenes
           HOxBLS]
          Length = 219

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E    ++ G+ +  IA  L IS  TV  ++ SI  K   + R   + Y
Sbjct: 161 LTRREHEIARLVATGENNKNIARKLDISERTVKAHLTSIFDKLQIRDRLQLVVY 214


>gi|113866890|ref|YP_725379.1| LuxR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113525666|emb|CAJ92011.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16]
          Length = 903

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL  RE+E L   +E  ++  IA+ L ++ +TV   + ++  K    +R  A+  A R  
Sbjct: 841 ELKPREIEILRLAAESMSNKRIALTLNLTLDTVKWNMKNVFEKLGVPSRYDAVIAARRRG 900

Query: 245 IV 246
           ++
Sbjct: 901 LI 902


>gi|35186966|gb|AAQ84141.1| PlmR3 [Streptomyces sp. HK803]
          Length = 213

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++ L  +SEGK   EIA  L  S  TV   +  +M++   + RS A++YA+R  ++
Sbjct: 154 SPRELDVLRLVSEGKELAEIAAKLCYSERTVKYILHGLMKRLQLRNRSHAVSYAIRAGLI 213


>gi|116670683|ref|YP_831616.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116610792|gb|ABK03516.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 254

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G  L+    R    + L++ G+ A+   ++     V   +   LT +E   L  +  G T
Sbjct: 124 GTDLIGALRRAAAGESLFDDGVAASIVESLVTPQQVDP-RIAGLTPQERRVLELVGGGLT 182

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +IA  + ++  TV NY++S++ K   + R+ A  Y
Sbjct: 183 NRQIAAEMFLAEKTVKNYVSSLLAKLGFERRTQAAVY 219


>gi|325068789|ref|ZP_08127462.1| two component system response regulator [Actinomyces oris K20]
          Length = 251

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  + +G ++  I   L ++ +TV +++ +I+ KT    R   + YA+   +
Sbjct: 188 LTVREDAVLALVCQGLSNASIGERLHVAESTVKSHVKTILGKTGCHNRVELVIYALTTGL 247

Query: 246 V 246
           V
Sbjct: 248 V 248


>gi|294013481|ref|YP_003546941.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676811|dbj|BAI98329.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 222

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ + L  +++G ++ +IA  L IS +TV  ++ +IM       R+  +A+ ++  
Sbjct: 161 LTKRQRDVLRLLAQGASNKDIAQRLNISESTVKVHVRAIMAVNGASNRTQIVAHLLKGG 219


>gi|259419012|ref|ZP_05742929.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
 gi|259345234|gb|EEW57088.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
          Length = 251

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 88/242 (36%), Gaps = 28/242 (11%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK-----LDSIVSSDWPF 84
           S+ L ++              +     G    LL  + LF+ +       D +V S+   
Sbjct: 4   SEYLHQLTQFKTIEELWHAHVSQMNRYGFDR-LLYGYTLFKTRTSLGDPDDFVVLSNHSP 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY-------------- 130
           + ++   +     +  +L    E          +++     +D +               
Sbjct: 63  EYLQGFLVDGLYSHAPMLTWALENEGHASWRAAQDMAAQGLLDCKARKVHEFNQAMNVCA 122

Query: 131 -CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGK 182
             +++F+ A  R    +       + +D + +I        +L    A++      +   
Sbjct: 123 GYTISFNSATDRFKGAISLAARPGLDQDAIDQIWAEHGSDIVLMNNVAHLKILTLPYHAP 182

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT R+ E L W+ +GKT+ +IA+++G++  T+  ++         +T + A+  A  
Sbjct: 183 NRALTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLCVETTAQAVLKAAL 242

Query: 243 NN 244
           +N
Sbjct: 243 HN 244


>gi|37528106|ref|NP_931451.1| hypothetical protein plu4274 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787543|emb|CAE16646.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 219

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+       LT +E E +  I EG ++  IA IL IS +TV  ++ +I  KT    R+  
Sbjct: 150 DLLPETPTILTAKEQEIINLIREGSSNKRIAQILNISLSTVKTHLRNIFAKTKVTNRTEL 209

Query: 237 IA 238
           ++
Sbjct: 210 VS 211


>gi|320094339|ref|ZP_08026127.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978727|gb|EFW10282.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 254

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D        LT RE E +  ++ G  + E A  L +S  TV N+I+SI+ KT  + R+ 
Sbjct: 185 PDPRSTVFASLTDREYEVVEAVAAGLDNAETAERLFMSEGTVRNHISSILAKTGLRNRTQ 244

Query: 236 AIAYAVRNN 244
                 R  
Sbjct: 245 VAVRYYRAG 253


>gi|295836763|ref|ZP_06823696.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           sp. SPB74]
 gi|295826194|gb|EFG64729.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           sp. SPB74]
          Length = 215

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 1/132 (0%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
              P    L   +    G D    +    +      +   F   +++   R    G  + 
Sbjct: 71  TVLPRLARLAPVLVVTYGRDAELHARVRRMGAAGCLVHGDFTVPQLVGAVRHLRAGAPSL 130

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              +  +S  V       L+ RE E +  I+ G  + +IA    I+  TV N+I  I  K
Sbjct: 131 PPPSHTRSA-VRPSWGGPLSAREEEVMNLIAAGLNNRQIAAACFITEKTVKNHINRIFAK 189

Query: 228 TATKTRSGAIAY 239
             T TRS AIA 
Sbjct: 190 LQTTTRSEAIAR 201


>gi|223934475|ref|ZP_03626396.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896938|gb|EEF63378.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 231

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 11/170 (6%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--FCPVFHTLPENITPPA-----GMDNRY 130
           + ++ P  ++  + +         + R   +    PV      + +             Y
Sbjct: 61  IPANRPDVVLMDINMPGMLGT-ECVSRLKNVAPTLPVLMLTVYDDSEQIFKSLMAGATGY 119

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGR 189
                   ++   +  +   G  + R     +  +  +Q    +  ++    + + LT R
Sbjct: 120 LLKRTPKDKLLEAIREIASGGAPMSRQIARRV--VQFFQEIKQEPKEITRAPEIKSLTER 177

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E + L  +S+G    EIA +L IS  TV  ++ +I  K    +R+ A   
Sbjct: 178 EEQVLALLSKGHAYKEIADLLNISFETVRTHVRTIYDKLHVHSRTEATLK 227


>gi|17549798|ref|NP_523138.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
 gi|17432053|emb|CAD18730.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 252

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 21/186 (11%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP---ENITPP------- 123
           +D +V+ D+P + +  +  +       +++R      PV+       E   P        
Sbjct: 53  MDYVVTVDYPNEHLLAIRNTAGGIDTPIMRRWLATRRPVYFDAAAPWEGTDPAWLEKFVK 112

Query: 124 AGMDNRYCSLTFDVAR---IRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVH 179
            G+ N      FD             L    +  L   L ++  +L +       + +  
Sbjct: 113 HGLRNCAADAMFDEVNCVGTYFSFHALPSVEQGCLDAMLRDLTPVLHSALLRAVANVESD 172

Query: 180 WGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             K  E    L+ RE E    I +GK++ EIA+++  S NTV +Y++SIM KT  + R  
Sbjct: 173 LQKASEALATLSEREREVALLIGQGKSNAEIALLVCKSENTVKHYLSSIMDKTGCENR-- 230

Query: 236 AIAYAV 241
            +  A+
Sbjct: 231 -VRVAM 235


>gi|329924693|ref|ZP_08279708.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
 gi|328940527|gb|EGG36849.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
          Length = 220

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 4/157 (2%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   L+  +    + +R       +  F                Y     D  RIR  +
Sbjct: 56  VRMPNLNGVEATKQLTERTKTKTLILTTFDDDEHITDAILNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
             ++    ++    L +I  GL         K    +       T RE++ +  I++G  
Sbjct: 116 KTVYHGHHVLQDVVLDKIKSGLSPGKPDKTDKEDKANKFDRSLFTERELDIMALIAKGLA 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + EI+  L IS  T+ N+I S++ KT  + R+    +
Sbjct: 176 NKEISKKLFISEGTIANHITSVLSKTGLEHRTQIAIF 212


>gi|253998442|ref|YP_003050505.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200518|ref|YP_004039176.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985121|gb|ACT49978.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312439834|gb|ADQ83940.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 214

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 12/159 (7%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +    +L R       +F         +         Y + T     +   ++ +
Sbjct: 63  GMGGLEAMRRILARYRTARVLIFSMHENAAFAMQTLKSGARGYVAKTGSFDELVKAVVEV 122

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                 I      +I L         ++         +L+ RE E     +EGK ++EIA
Sbjct: 123 ARGKSYISTSIAQKIAL---------QTVIGDGDLISQLSPREFEVFRLFAEGKNAEEIA 173

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +L IS+ TV NY   + +K         + +A+++ ++
Sbjct: 174 EVLKISQKTVANYHTLVKQKLGLSNPVEMVRFAIKHGLI 212


>gi|229525876|ref|ZP_04415281.1| DNA-binding response regulator LuxR family [Vibrio cholerae bv.
           albensis VL426]
 gi|229339457|gb|EEO04474.1| DNA-binding response regulator LuxR family [Vibrio cholerae bv.
           albensis VL426]
          Length = 214

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    Y
Sbjct: 147 ANKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQY 206

Query: 240 AVRNNIV 246
           A+++ ++
Sbjct: 207 ALQHGLL 213


>gi|226362567|ref|YP_002780345.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226241052|dbj|BAH51400.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 773

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           AR  IG      + R  L  R  E    A  +     S          LT RE +    +
Sbjct: 666 ARQAIGDRGFESEFRQGLGTRFDEAAAYALEETG--PSDGPAEPGSTSLTRREQQVAELV 723

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +EG T+  IA  L IS+ T   ++  I+ K    +R+   A+++   
Sbjct: 724 AEGLTNKAIAARLVISQRTAQGHVEHILSKLGFNSRAQIAAWSIEQR 770


>gi|56696641|ref|YP_167002.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678378|gb|AAV95044.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3]
          Length = 258

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 84  FDLVRCMALSEKDK-YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            DLV   A    +  Y +  +R  E        L   +            +     +  +
Sbjct: 75  ADLVLAQARQGPESLYIDSGRRLQESNSDTALALYSGLVEHGYRHVFSLIVPCPGNQAML 134

Query: 143 GLMLL-FPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-----------WGKDFELTGRE 190
             +    P+    + ++   + +LA            H            G    L+ RE
Sbjct: 135 VALFTDHPEADSWMTEQSAGMRILATVIGTNLGPGTEHGQSSGQDLTPILGTTAPLSRRE 194

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  +++G  +++IA  + IS  TV  ++ S   K    TR  A+  A++  ++
Sbjct: 195 REALHLLADGLRNEQIAAAMKISEVTVRMHLKSARDKLRAPTREAALVRAMQMGLL 250


>gi|68535964|ref|YP_250669.1| two-component system response regulator TcsR2 [Corynebacterium
           jeikeium K411]
 gi|68263563|emb|CAI37051.1| two-component system response regulator TcsR2 [Corynebacterium
           jeikeium K411]
          Length = 200

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 61/179 (34%), Gaps = 21/179 (11%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L QEQ +D +   D     +  +  +++        R   L    F              
Sbjct: 43  LAQEQPID-VALLDIEMPGLNGIDAAKELA----GNRCRCLIVTTFGKAGYVKRAMEVGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +    R+I    L +  LL                 D  L+
Sbjct: 98  DGFIVKDTPPEELADAIRRVHAGLRVIDP-TLAQESLLT---------------PDNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    + EGK+S  IA  L +S  TV N+I+SIM KT    R  A   A  N  +
Sbjct: 142 ERETEVCQQLFEGKSSPAIAKALHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKTNGWI 200


>gi|315650698|ref|ZP_07903754.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315487075|gb|EFU77401.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 217

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF+ L    +          SL   +  +  G  ++ P    I    L     LA     
Sbjct: 90  VFNALKYGASGYLLKGISMDSLIEAINTVYQGQAMINPD---IASKVLRFFSKLAVNNET 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           ++    V       +T  E   +  +S+GK++ EIA  L  S  TV NY+++I+ K   +
Sbjct: 147 IY----VPAENIKMITKNEWTIIREVSKGKSNKEIAKDLSFSEGTVRNYLSNILDKLELR 202

Query: 232 TRSGAIAYAVRNN 244
            R+    +A+   
Sbjct: 203 DRTQLAIWAIGRG 215


>gi|323345346|ref|ZP_08085569.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323093460|gb|EFZ36038.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 203

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV +  
Sbjct: 138 LTGREIEVLSLIVQGFINKEIAGRLNISITTVITHRKNIMEKLGMKSVSALTIYAVMHGY 197

Query: 246 V 246
           V
Sbjct: 198 V 198


>gi|314987054|gb|EFT31146.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
          Length = 218

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 9/176 (5%)

Query: 78  VSSDWPFDL-VRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           V    P D+ +  + + + D       +   P +    +  T   +    A +       
Sbjct: 45  VLRRMPVDVALMDIRMPQMDGVEATRRITASPLDTKVLILTTFDLDEYVYAALKAGASGF 104

Query: 134 TFDVAR---IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
               AR   +   +  +     ++         LL      +         +   LT RE
Sbjct: 105 LLKDARPTELLSAIRNVADGDAVVAPSATRR--LLDHVVPPLPNDPKAADKRLSVLTDRE 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    ++
Sbjct: 163 KEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL 218


>gi|229491400|ref|ZP_04385224.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
 gi|229321685|gb|EEN87482.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
          Length = 367

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+   AN+ +        D  LT REV+ L+ ++ G T+ E    L +   TV +Y+ S 
Sbjct: 286 LSQRLANLLRPT-ADAESDVTLTPREVDVLSQVALGCTNIEAGQRLSLRPETVKSYLRSA 344

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           M K    +R  A+  A R  ++
Sbjct: 345 MGKLDASSRHEAVVTARRLGLL 366


>gi|311739592|ref|ZP_07713427.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305408|gb|EFQ81476.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 225

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 4/154 (2%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIGLMLLFPKGRI 153
               +     E    +  T  +     AG+            +   +   L  ++    +
Sbjct: 64  ATAEIASTLPETKVIILTTFDDEDYVVAGLRAGASGFVLKDAEPEELLSALRTVYRGDAV 123

Query: 154 IL-RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           I  R     +  +     +              LT RE E L  I  G ++ EI   + I
Sbjct: 124 ISPRATKRLVHSMRDDSTDTLSISGADRRVLESLTAREQEILEAIGMGWSNTEICERMFI 183

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  ++  ++ KT+++ R  A  +A R  +V
Sbjct: 184 SMPTVKTHVGRVLAKTSSRDRVHAALFAYRTGVV 217


>gi|213583489|ref|ZP_03365315.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 84

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              + +         LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   
Sbjct: 8   RERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNV 67

Query: 231 KTRSGAIA 238
           ++R  A  
Sbjct: 68  RSRVAATI 75


>gi|326773122|ref|ZP_08232406.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326637754|gb|EGE38656.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 246

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  +++G ++ E+A  L +   T+  ++  +M+KT ++ R   + + +R
Sbjct: 181 DVALTSRELEVLRLLAQGMSNSEMAAHLYVEPTTIKYHLTGLMQKTGSRDRLQTVLWGIR 240

Query: 243 NNIV 246
             +V
Sbjct: 241 AGLV 244


>gi|192289348|ref|YP_001989953.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192283097|gb|ACE99477.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 225

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +    F V ++   ++ +      +  D   ++   A  + +  +       +   L
Sbjct: 104 ASGFVPKRFGVEKLGEAILRVLDGDVWVPPD--VDLSAAADPETSKLR------DRLVTL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 156 TPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|27382083|ref|NP_773612.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355253|dbj|BAC52237.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 261

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEI---------GLLAAYQANMFKSYDVHWGK 182
           SL  ++A   + L+L+    R +   R+  I         GL+ AY  N      +    
Sbjct: 123 SLPIEIAIAGLRLVLVGGAYRPLPVARMNRITDFEPPDARGLVPAYLINEGARVAIDRRS 182

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +LT RE + L  +  G  +  IA  LG+S +TV  +I  IMRK A   R+ A+
Sbjct: 183 VTDLTPREQQVLAELELGLPNKLIAAKLGLSESTVKMHIQHIMRKCAAHNRTEAV 237


>gi|319941648|ref|ZP_08015972.1| hypothetical protein HMPREF9464_01191 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804878|gb|EFW01732.1| hypothetical protein HMPREF9464_01191 [Sutterella wadsworthensis
           3_1_45B]
          Length = 207

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 19/197 (9%)

Query: 67  DLFQEQKLDSIVSSDWPFDLV----RCMALSEKDKY--YNVLQRPTELFCPVFHTLPENI 120
            L +    D+ V S W F L      C+  S+ D +   N  +RP  +   V       +
Sbjct: 8   PLIRIIDDDAGVRSSWSFLLSGENYECVEFSDADTFFSANDFRRPGCILLDVRMPNMSGL 67

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--------LLAAYQANM 172
                +    C L          + +     +    D L +          + AA   N 
Sbjct: 68  ELQNKLKEIGCDLPIVFVSGHADIDMAVNAVKNGAFDFLEKPAKESRLIDVIEAAVARNK 127

Query: 173 FKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
               D     DF     +LT RE E +  +++G ++ E+A   GIS  TV  +  S  RK
Sbjct: 128 ANRRDQAEVADFKARLEQLTQREREVIRMVAQGYSNKEVAAEFGISEKTVQVHRGSAYRK 187

Query: 228 TATKTRSGAIAYAVRNN 244
                 +      + + 
Sbjct: 188 LELHNAAEIARLLLLSG 204


>gi|317403552|gb|EFV84049.1| hypothetical protein HMPREF0005_03096 [Achromobacter xylosoxidans
           C54]
          Length = 238

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A    +      +  ELT R+ E L  + +GKT  EI   +GIS  TV ++  ++  K  
Sbjct: 162 ARPLATAHAPLQELRELTQRQEEILQLLVQGKTMREIGQQVGISVATVKSHARTLYWKLN 221

Query: 230 TKTRSGAIAYAVRNNIV 246
            + ++ A   AV+  +V
Sbjct: 222 ARNQAEAAYIAVQMGLV 238


>gi|309811175|ref|ZP_07704970.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308434861|gb|EFP58698.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 351

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +       R   L   + R+  G  LL      ++R RL   G L               
Sbjct: 238 SGYVLKQVRGADLIETIERVAAGESLLDTADADVIRARLRGDGAL-------------ES 284

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +   LT +E   L  I++G T+ +IA  L ++  TV NY+ S++ K   ++R+ A  
Sbjct: 285 PELAALTEQEKRVLDLITQGYTNRQIAGRLHLAEKTVKNYVTSLLAKLGLESRTQAAV 342


>gi|256376351|ref|YP_003100011.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920654|gb|ACU36165.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 209

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 5/154 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR   +   +    +      L    F                +   + +   +   +  
Sbjct: 52  VRMPGVDGIEATRRLAGVCEVLVLTTFDLDEYVRGALRAGAAGFLLKSVEAPALVDAVRR 111

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     ++       +  +  + A          G    LT REV+ L  + EG ++ +I
Sbjct: 112 VAAGDGVLAPSVTRRV--MREFAAGPAARAKPDLGA---LTDREVDVLRCLGEGLSNAQI 166

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              L I   TV  +++ ++ K   ++R  A   A
Sbjct: 167 GTRLRIGETTVKTHVSRVLMKLDLRSRVQAALLA 200


>gi|134101589|ref|YP_001107250.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291009956|ref|ZP_06567929.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914212|emb|CAM04325.1| protein kinase/transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 780

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  D  W     LT RE +    I+EG ++ +IA  L I + TV ++   I+ K    +R
Sbjct: 707 QRDDPQWS---PLTRREQDVAQLIAEGLSNRDIAARLLIKQRTVESHAEHILAKLGVDSR 763

Query: 234 SGAIAYAVRNN 244
           +    + V   
Sbjct: 764 TQVAVWVVERR 774


>gi|227818586|ref|YP_002822557.1| CitB, response regulator containing a CheY-like receiver domain and
           an HTH DNA-binding domain CitB [Sinorhizobium fredii
           NGR234]
 gi|36958841|gb|AAQ87266.1| two-component response regulator [Sinorhizobium fredii NGR234]
 gi|227337585|gb|ACP21804.1| putative CitB, response regulator containing a CheY-like receiver
           domain and an HTH DNA-binding domain CitB [Sinorhizobium
           fredii NGR234]
          Length = 217

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L A   +N   +    +    ELT RE E L  ++ G ++ ++A  L +   T+ +++  
Sbjct: 131 LSAKLLSNSAPTPGSKFDGIGELTTREREVLKLVASGMSNKQVARNLNLHEKTIKHHMTQ 190

Query: 224 IMRKTATKTRSGAI 237
           IM K     R+ A 
Sbjct: 191 IMAKLDVANRTEAA 204


>gi|84684996|ref|ZP_01012895.1| autoinducer-binding transcriptional regulator LuxR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666728|gb|EAQ13199.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2654]
          Length = 225

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 6/134 (4%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKS 175
           +     G+ N+  S+     + +  L  L  +          +I    L+        ++
Sbjct: 90  DDALKHGLGNQGYSIPLHGPQGQFALFTLNHQAEDDDWAAFIDINGRDLIVLAHEFNRRA 149

Query: 176 YDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +    +      L+ RE+  +  ++ G +  + A  LGIS +T+  YI S   K     
Sbjct: 150 LEFEGAEGIASPSLSPRELAAIRCLARGLSRAQAAAELGISEHTLRVYIESARHKLGALN 209

Query: 233 RSGAIAYAVRNNIV 246
            + A+A A+   I+
Sbjct: 210 TTHAVARALSTGII 223


>gi|15641290|ref|NP_230922.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586548|ref|ZP_01676334.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121730066|ref|ZP_01682473.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147674446|ref|YP_001216842.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153820380|ref|ZP_01973047.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153823763|ref|ZP_01976430.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153826597|ref|ZP_01979264.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|227081449|ref|YP_002810000.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|229505135|ref|ZP_04394645.1| DNA-binding response regulator LuxR family [Vibrio cholerae BX
           330286]
 gi|229511193|ref|ZP_04400672.1| DNA-binding response regulator LuxR family [Vibrio cholerae B33]
 gi|229515653|ref|ZP_04405112.1| DNA-binding response regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229518312|ref|ZP_04407756.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC9]
 gi|229529641|ref|ZP_04419031.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           12129(1)]
 gi|229608155|ref|YP_002878803.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           MJ-1236]
 gi|254286624|ref|ZP_04961580.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|254848401|ref|ZP_05237751.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297578869|ref|ZP_06940797.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298498631|ref|ZP_07008438.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9655763|gb|AAF94436.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549227|gb|EAX59259.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121628186|gb|EAX60711.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|126509076|gb|EAZ71670.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126518710|gb|EAZ75933.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146316329|gb|ABQ20868.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|149739609|gb|EDM53829.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|150423382|gb|EDN15327.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|227009337|gb|ACP05549.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227013194|gb|ACP09404.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|229333415|gb|EEN98901.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           12129(1)]
 gi|229345027|gb|EEO10001.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC9]
 gi|229347422|gb|EEO12382.1| DNA-binding response regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229351158|gb|EEO16099.1| DNA-binding response regulator LuxR family [Vibrio cholerae B33]
 gi|229357358|gb|EEO22275.1| DNA-binding response regulator LuxR family [Vibrio cholerae BX
           330286]
 gi|229370810|gb|ACQ61233.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           MJ-1236]
 gi|254844106|gb|EET22520.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297536463|gb|EFH75296.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297542964|gb|EFH79014.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 216

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    Y
Sbjct: 149 ANKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQY 208

Query: 240 AVRNNIV 246
           A+++ ++
Sbjct: 209 ALQHGLL 215


>gi|269216003|ref|ZP_06159857.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC
           700122]
 gi|269130262|gb|EEZ61340.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC
           700122]
          Length = 493

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             D  L+ RE E L  ++ GKT  +I   L IS++TV  +I  I RK     R   +A
Sbjct: 427 AADHALSPREAEILAMLASGKTGPQIQNELFISKDTVKTHIKHIYRKLDVHARDELVA 484


>gi|302548156|ref|ZP_07300498.1| LuxR family protein kinase/transcriptional regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465774|gb|EFL28867.1| LuxR family protein kinase/transcriptional regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 767

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 36/80 (45%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           ++  L+ A +  +         +   LT RE E    +++G ++ EIA  L I++ T   
Sbjct: 668 YDQALVYALEDQLPSGEAAVPERPSPLTPRETEIAQLVAQGLSNKEIAAALVIAQRTAEG 727

Query: 220 YIASIMRKTATKTRSGAIAY 239
           +I  I+ K    +R+    +
Sbjct: 728 HIEHILSKLGFTSRAQVAVW 747


>gi|223934727|ref|ZP_03626647.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896682|gb|EEF63123.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 210

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 14/175 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPP----A 124
           E+ L  I+  + P  ++  + L           +++ T     +  T+ E+         
Sbjct: 38  EEALPQILDRN-PDVVLMDIKLPGMSGIQCVAEIKKVTPAMQVIMVTVYEDSERIFRALK 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y   +    ++   +  ++  G  +          +A+     F        +  
Sbjct: 97  AGANGYLVKSSPPEQLLEAIRDVYKGGAPMSSH-------IASKVVKHFHLIGSSPREAE 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L+ RE E L  ++ G    EI   L I   TV  Y+ +I +K   ++R  A+A 
Sbjct: 150 NLSPREQEVLELLALGFIYKEIGDKLNIGTETVRTYVKNICQKMHVRSRLEAVAK 204


>gi|326439647|ref|ZP_08214381.1| hypothetical protein SclaA2_01225 [Streptomyces clavuligerus ATCC
            27064]
          Length = 1010

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 7/153 (4%)

Query: 91   ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             L+E   YY  + RP +L       L +     A +     +       +     L    
Sbjct: 860  PLAEAVAYYRGVARPLDLG----QALEDGAAVRAALGEPAAARELLQQALERYARLGAAW 915

Query: 151  GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                   RL  +G+    +A         W     LT  E+     +++G+++ EIA  L
Sbjct: 916  DARRAVGRLRALGVRTGPRAARNGRPSTGWAA---LTPAELRVAHRVAQGRSNPEIAAEL 972

Query: 211  GISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +S  TV  +++SI+ K   ++R+     A   
Sbjct: 973  FLSPRTVQTHVSSILTKLGARSRTEVARQAAER 1005


>gi|307941458|ref|ZP_07656813.1| glycerol metabolism activator [Roseibium sp. TrichSKD4]
 gi|307775066|gb|EFO34272.1| glycerol metabolism activator [Roseibium sp. TrichSKD4]
          Length = 228

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  A R
Sbjct: 152 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAASR 208


>gi|291575304|gb|ADE10229.1| LigR [Actinoplanes liguriensis]
          Length = 218

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 11/168 (6%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPEN---ITPPAGMDNRYCSLTFD 136
           P  ++  + +   D              P   V  T  +N    +           L   
Sbjct: 52  PDVVLMDIRMPRVDGITAARAILEGNAQPPKIVALTTYDNDEYASRILAAGASGYLLKDT 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A      +    +G  +L        + A  Q     S  +        T RE E    
Sbjct: 112 TAEGLTAAIRTVHRGGSVLAPSTTHRLVTAHRQHPARPSALLD-----SFTTREREVFDL 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I  G ++ EIA  L ++  T+  ++  ++ K   + R   + +A RN 
Sbjct: 167 IVAGASNAEIADRLNLAEVTIKTHVGRVLAKIGVRDRVNVVIWAYRNG 214


>gi|229172478|ref|ZP_04300037.1| Response regulator [Bacillus cereus MM3]
 gi|228610949|gb|EEK68212.1| Response regulator [Bacillus cereus MM3]
          Length = 212

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 10/138 (7%)

Query: 106 TELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           TE    +  T  ++      + N    Y     D  RIR  +  ++    ++    L +I
Sbjct: 74  TETKSLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTVMQDVVLDKI 133

Query: 163 GLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
                  +N+ +S +     D  L T RE+  +  I++G ++ EI+  L IS  T+ NYI
Sbjct: 134 K------SNLMESKEDECKIDTSLFTERELSIIALIAKGFSNKEISKQLFISEGTIANYI 187

Query: 222 ASIMRKTATKTRSGAIAY 239
            S++ KT  + R+    Y
Sbjct: 188 TSVLGKTGLEHRTQIAIY 205


>gi|153801325|ref|ZP_01955911.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|255745673|ref|ZP_05419621.1| DNA-binding response regulator LuxR family [Vibrio cholera CIRS
           101]
 gi|262159050|ref|ZP_06030162.1| DNA-binding response regulator LuxR family [Vibrio cholerae INDRE
           91/1]
 gi|262169409|ref|ZP_06037101.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC27]
 gi|262190004|ref|ZP_06048308.1| DNA-binding response regulator LuxR family [Vibrio cholerae CT
           5369-93]
 gi|124123150|gb|EAY41893.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|255736748|gb|EET92145.1| DNA-binding response regulator LuxR family [Vibrio cholera CIRS
           101]
 gi|262022222|gb|EEY40931.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC27]
 gi|262029235|gb|EEY47887.1| DNA-binding response regulator LuxR family [Vibrio cholerae INDRE
           91/1]
 gi|262034112|gb|EEY52548.1| DNA-binding response regulator LuxR family [Vibrio cholerae CT
           5369-93]
 gi|327483964|gb|AEA78371.1| DNA-binding response regulator, LuxR family [Vibrio cholerae
           LMA3894-4]
          Length = 212

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    Y
Sbjct: 145 ANKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQY 204

Query: 240 AVRNNIV 246
           A+++ ++
Sbjct: 205 ALQHGLL 211


>gi|54024864|ref|YP_119106.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016372|dbj|BAD57742.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 215

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L +    AA  A +    +   G    LT +E   L  + EG T+ +IA  + ++  TV 
Sbjct: 124 LLDNRAAAALMAKLRAEAEADTGPLAALTEQERTLLALLGEGLTNRQIAARMFLAEKTVK 183

Query: 219 NYIASIMRKTATKTRSGAIAYAVR 242
           NY++ ++ K   + R+ A   A +
Sbjct: 184 NYVSRLLTKLGVERRTQAAVLAAK 207


>gi|284045835|ref|YP_003396175.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950056|gb|ADB52800.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 214

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 7/127 (5%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +        R            +  + +   G  +L   + +   +A  Q +   +  V 
Sbjct: 94  VHRAISAGARAFLPKGSSGDEIVEAVSVVADGGSLLPRAVHDTLTMALRQRSEVPAGPV- 152

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE+E L   S+G T   IA  L I   TV  ++  I  K     R+ A+A+
Sbjct: 153 ------LSTRELEVLRLASDGLTVSAIAQALIIGDATVKTHLQHIYDKFGVSDRAAAVAH 206

Query: 240 AVRNNIV 246
             R   +
Sbjct: 207 GFRLGFL 213


>gi|150009195|ref|YP_001303938.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|256841751|ref|ZP_05547257.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|298377017|ref|ZP_06986971.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_19]
 gi|149937619|gb|ABR44316.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|256736645|gb|EEU49973.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|298266001|gb|EFI07660.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_19]
          Length = 203

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 3/138 (2%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            P + TL          + +  +L + V+   +              D +     L    
Sbjct: 61  LPGYFTLQHLKEESGCAEMKCIALLYSVSDSVLLRSYDEQINIYDSPDEIKHK--LERLN 118

Query: 170 ANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           A +    +     + + L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK 
Sbjct: 119 AEVLPDDEPEGDDEQQSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKL 178

Query: 229 ATKTRSGAIAYAVRNNIV 246
              + SG   YA+ N +V
Sbjct: 179 QIHSASGLTIYAIVNKLV 196


>gi|213027871|ref|ZP_03342318.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 137

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S ++       L+ R+ E L  ++ G+++ +I   L IS  TV  ++ S+ R+   K 
Sbjct: 66  LNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDVKN 125

Query: 233 RSGAI 237
           R+ A 
Sbjct: 126 RTQAA 130


>gi|149375829|ref|ZP_01893597.1| putative glycerol regulatory protein [Marinobacter algicola DG893]
 gi|149359954|gb|EDM48410.1| putative glycerol regulatory protein [Marinobacter algicola DG893]
          Length = 257

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 43/88 (48%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           + L   +   G  + ++ +  +   +       LT R++  L  +S+G+++ +IA  L I
Sbjct: 159 VYLPSDIIRTGKESTHRRSRHEDNPISPELLNSLTRRQLLVLERMSKGESNKQIAYNLNI 218

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +  TV  ++++I+RK     R  AI  A
Sbjct: 219 AETTVKAHVSAILRKLGVHNRVQAILSA 246


>gi|328544840|ref|YP_004304949.1| Two component transcriptional regulator, LuxR family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326414582|gb|ADZ71645.1| Two component transcriptional regulator, LuxR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 221

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++V  L  +SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  A R
Sbjct: 152 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAASR 208


>gi|297159287|gb|ADI08999.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   +     I   +        +I    L E+  LA ++    +S      +   LT 
Sbjct: 106 GYLLKSASGDEIADAIRSAAEGETLIPASTLVEV--LARHRETA-RSSAQQTERLESLTP 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E LT +S+G  +  +A  L IS  TV  ++  I+ K   +++  A+A A    
Sbjct: 163 REQEILTLMSQGLDNRAVAERLSISYATVRTHVRKILEKLEVRSQLEAVAKAADWG 218


>gi|237722799|ref|ZP_04553280.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|229447321|gb|EEO53112.1| transcriptional regulator [Bacteroides sp. 2_2_4]
          Length = 257

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI       ++
Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256


>gi|170696363|ref|ZP_02887492.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170138691|gb|EDT06890.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 274

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 15/188 (7%)

Query: 63  LVRWDLFQE-QKLDSIVSSDWP-------FDLVRCMALSEKDKYYNVLQ--RPTELFCP- 111
           L R++  Q+ ++ +  +   WP        D +    +     +Y  L+    T+   P 
Sbjct: 7   LARFNEAQDWRQAERTLKRQWPDLFVIDWQDWMSVKDVRHLLSHYPDLRIAVLTDRISPK 66

Query: 112 -VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
            V   + E +      +   C +      + +G   + P G + L+  L     +  +  
Sbjct: 67  AVSELMDEGVRGVVPRETDPCLIVRAFEMVLLGGHYV-PSGALPLKPPLPADTAIRPFDE 125

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                  V       L+ R+ + +  +  G T+  IA  LGIS  TV  ++ SI ++   
Sbjct: 126 KSPPPRRVRLSN--GLSPRQQQIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGA 183

Query: 231 KTRSGAIA 238
             R+ A+A
Sbjct: 184 PNRAAAVA 191


>gi|153829582|ref|ZP_01982249.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|148874916|gb|EDL73051.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
          Length = 216

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    Y
Sbjct: 149 ANKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQY 208

Query: 240 AVRNNIV 246
           A+++ ++
Sbjct: 209 ALQHGLL 215


>gi|332716184|ref|YP_004443650.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325062869|gb|ADY66559.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 783

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE + L  ++ G ++ +IA  L IS  TV  ++ ++ RK   K R+ AI  A    
Sbjct: 723 LSQREAQMLQLLASGMSNKKIAQTLNISEVTVKFHLGNLFRKLDCKRRAEAIRAAKALG 781


>gi|296268892|ref|YP_003651524.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091679|gb|ADG87631.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 197

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 20/199 (10%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           A+   +G    L V   + +   ++  V    P  +V  + +   D    V +R T    
Sbjct: 16  AIAALLGLEGDLEVVAQVGRGDAVEEAVRRHDPDVIVLDVEMPGMDG-LTVAERLTGRAI 74

Query: 111 PV---FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
            +   F          A     +        ++   +  +   GR +  + L  + + A 
Sbjct: 75  LILTSFGRPGYLRRALAAGVRGFIPKDAPAEQLAEAIRKVHAGGRYLDPE-LAALAMTAG 133

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                          D  LT RE + L   +EG T  EIA  + +S  TV NY+++ + K
Sbjct: 134 ---------------DCPLTQRERDALKLAAEGATVAEIAAAIHLSEGTVRNYLSNAITK 178

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R  AI  A     +
Sbjct: 179 LGAGNRITAIRVAREMGWI 197


>gi|225155470|ref|ZP_03723961.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224803771|gb|EEG22003.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 225

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 9/170 (5%)

Query: 83  PFDLVRCMALS-----EKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-DNRYCSLTFD 136
           P  +V  +A+      E  +   ++   T++     H+  E +   A +  + Y      
Sbjct: 50  PAVVVMDIAMPVLNGFEATRQILLIAPATKVLVLSAHSDDEYVAKMAAVGASGYLVKQNS 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +           L     L        ++          LT RE E L  
Sbjct: 110 GQVLVRAIKEIVAGHPYFSPSILKR---LQDAARRSLETGTPRAKPSQSLTTREAEVLQL 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG  + ++A  LGIS  TV  +   +M K      +G   +A+   ++
Sbjct: 167 VAEGAANKQVAAELGISIKTVEKHRQQLMNKLDIHDTAGLTRHAIATGVI 216


>gi|146283191|ref|YP_001173344.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri
           A1501]
 gi|145571396|gb|ABP80502.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri
           A1501]
 gi|327481559|gb|AEA84869.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 215

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE + L    +G ++ EI   L +S +T+ +++ + +RK     R+   +  + +
Sbjct: 151 ELTLREKQILALAGQGLSNAEIGEKLHLSIHTIKSHVHNALRKLGASNRAQGASLVLAH 209


>gi|126730312|ref|ZP_01746123.1| autoinducer-binding transcriptional regulator LuxR [Sagittula
           stellata E-37]
 gi|126709045|gb|EBA08100.1| autoinducer-binding transcriptional regulator LuxR [Sagittula
           stellata E-37]
          Length = 226

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 78/230 (33%), Gaps = 25/230 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D      + +  L +  G  H ++  W     ++        +  + V        
Sbjct: 1   MESADGLEDLQLLIEELRDEYGVDH-IVYHWVNSAGEQYG---CGTYDLEWVNHYIEKGY 56

Query: 96  DKYYNVLQRPTELFCPV------------FHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +   V+Q   + F PV               L + I    G+ N+  S+       +  
Sbjct: 57  LRIDPVIQGCYQRFHPVNWKRLDWSSKSARAFLEDAIG--HGIGNQGYSIPIRGPNGQFA 114

Query: 144 LMLLFP-----KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTW 196
           L  +       +          ++ L+A    +    ++     +    L+ RE+E +T 
Sbjct: 115 LFTMSHSCNDDEWEAFTISNRRDLILVAHSFNSKALEFEPGRTPEPAQPLSPREIEAMTL 174

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G +  + A  L IS +T+  Y+ S   K      + A+A A+   ++
Sbjct: 175 LAIGYSRAQAADTLSISEHTLRVYVESARHKLGAMNTTHAVAQALSRGVI 224


>gi|83647746|ref|YP_436181.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635789|gb|ABC31756.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 221

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 8/171 (4%)

Query: 72  QKLDSIVSSDWPFDLVR-CMALSEKDKYYNVL-QRPTELFCPVF--HTLPENITPPAGMD 127
             L   V ++   DLV   + +     +  ++  R      PV       E       +D
Sbjct: 38  ATLQDAVVANPDADLVLLDLNMPGAHGFSGLVFMRGQYPGLPVVIVSGSEELQVIRRAID 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                     A     L  +    + +L   +W    +AA   ++   +     +   LT
Sbjct: 98  YGASGFIPKSAP----LDEISQAIQAVLNGEVWLPADVAAKIDSVKAEHSDFSERLATLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            ++   L  ++EG  + +IA  L +S  TV  +I ++ RK   + R+ A+ 
Sbjct: 154 PQQFRVLGMLTEGMLNKQIAYDLDVSEATVKAHITALFRKLGVRNRTQAVI 204


>gi|145221325|ref|YP_001132003.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|315441791|ref|YP_004074670.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145213811|gb|ABP43215.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
 gi|315260094|gb|ADT96835.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 214

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 15/173 (8%)

Query: 80  SDWPFDLVRCMALSEKDKY---YNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSL 133
              P   +    +   D       V +        +     E+      + +    +   
Sbjct: 50  EHRPAVALLDYRMPGMDGAEVAAAVQRGALPTRVLLISAHDESAIVYRALADGAAGFLPK 109

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   ++       ++          LAA  A   +      G    L+ RE E 
Sbjct: 110 ESTRNELITAVLDCAKGRDVVAPS-------LAAGLAGEIRRRAEPEGP--ALSPREREV 160

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I+ G T   +A  L ++ +TV  ++  +  K     R  A+A A+R  ++
Sbjct: 161 LVLIAAGSTIPAMARELFLAPSTVKTHVQRLYEKLGVSDRGAAVAEAMRRKLL 213


>gi|332881678|ref|ZP_08449326.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332680317|gb|EGJ53266.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 326

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  L+ RE E +  + +G ++ EIA  L IS NTV  +  +I RK    + +G   YA
Sbjct: 254 SANDALSDREKEVIVCVVKGMSNKEIAEQLYISVNTVMTHRRNISRKLQIHSPAGLTIYA 313

Query: 241 VRNNIV 246
           + N ++
Sbjct: 314 IVNGLI 319


>gi|331087369|gb|AEC53455.1| two-component system response regulator [Actinosynnema pretiosum
           subsp. auranticum]
          Length = 205

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +  ++ G  + EI   L +S +TV  ++A+   KT  + R    A+A R  +
Sbjct: 143 LTPRERDVVREVARGLGNREIGDALHLSLSTVKTHLAAAQGKTGARNRVELAAWAFRARL 202

Query: 246 V 246
           V
Sbjct: 203 V 203


>gi|322386644|ref|ZP_08060269.1| two component system response regulator [Streptococcus cristatus
           ATCC 51100]
 gi|321269317|gb|EFX52252.1| two component system response regulator [Streptococcus cristatus
           ATCC 51100]
          Length = 227

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 66/169 (39%), Gaps = 6/169 (3%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFD 136
           P  ++  + +   D       V ++  +    +  T  ++    + +    + Y      
Sbjct: 48  PDVILMDIRMPVMDGVLCTKAVKEQYPDAKIIILTTFDDDEFIFSALKYGASGYILKGVS 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  ++  G +I  +   ++  + +  A    +  V      +++  E + +  
Sbjct: 108 TEELHEAIQTVYRGGAMINPNIATKVFKIFSQMAQSNFAITVSEENVEDMSRTEWKIIQQ 167

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I  G ++ EIA  L +S  TV NY++ I+ K   + R+    +AV+  +
Sbjct: 168 IGFGISNKEIAAKLYLSEGTVRNYLSGILSKLNLRDRTQLAIWAVQTGV 216


>gi|258620181|ref|ZP_05715220.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
 gi|258587539|gb|EEW12249.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
          Length = 216

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA+
Sbjct: 151 KPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYAL 210

Query: 242 RNNIV 246
           ++ ++
Sbjct: 211 QHGLL 215


>gi|253564051|ref|ZP_04841508.1| LuxR family transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|251947827|gb|EES88109.1| LuxR family transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|301161648|emb|CBW21188.1| putative LuxR family transcriptional regulator [Bacteroides
           fragilis 638R]
          Length = 199

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--- 183
             +   L  D  + ++  + +    +   +     + L      + +   D+        
Sbjct: 72  KRKTIVLAGDSHQFQLSGVPILNIYQAEEQLVKDILKLHQHAHHDGYPIKDMPPTPPTTG 131

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+ RE+E L  I++G  + EIA  L I   TV  +  +I  K   K+ SG   YAV N
Sbjct: 132 HELSAREIEVLVLITKGLINKEIADKLNIGLTTVITHRKNITEKLGIKSVSGLTIYAVMN 191

Query: 244 NIV 246
             V
Sbjct: 192 GYV 194


>gi|271967578|ref|YP_003341774.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510753|gb|ACZ89031.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 71/213 (33%), Gaps = 8/213 (3%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ R++  D           + +   A   + V  +    +       +  P  ++  + 
Sbjct: 1   MVTRILIADDQEGIRSAFRMILD---AQPDMTVVAEASDGRAAIDTARTVQPDVVLADIR 57

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           +   D    V +        V       +         + +  F + R    L+ +    
Sbjct: 58  MPGADG-IEVTRALAGTGIHVVIVTTFGLDEYVHAALHHGAAGFVLKRSGPTLL-IEAIR 115

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             +  D L    L       + +           LT RE + +  ++ G T+ EIA  L 
Sbjct: 116 AAMNGDMLISPQLTVRL---LRRRGLPQESSSVVLTEREDQIVAMVAHGMTNAEIAAELF 172

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +S  TV N+IAS+  KT T+ R    A+A    
Sbjct: 173 LSPGTVKNHIASVQNKTGTRNRVAIAAWAWATG 205


>gi|126433549|ref|YP_001069240.1| response regulator receiver protein [Mycobacterium sp. JLS]
 gi|126233349|gb|ABN96749.1| response regulator receiver protein [Mycobacterium sp. JLS]
          Length = 207

 Score = 78.5 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 6/157 (3%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR----IRIGLMLLFP 149
           +  +    L+R +     +  T  ++ T  A  +     L          +   +  +  
Sbjct: 53  QTRRVLRSLRRASVPHRVLVTTAVDDSTVIAAAEVGVNGLLRRAEATPEVLARTIRKIAA 112

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +I  D L    LL        +           LT RE++ L  I+EG  + EIA  
Sbjct: 113 GDGVIPADLLGH--LLEQVGRLQRQVLSPRGLTFTGLTDREIKVLRLIAEGHDTSEIAQQ 170

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  S+ TV N +  +  +   + RS A+AYAVR  ++
Sbjct: 171 LCYSQRTVKNVLHDVTTRLQLRNRSHAVAYAVREGLI 207


>gi|320533376|ref|ZP_08034066.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134393|gb|EFW26651.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 246

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE+E L  +++G ++ E+A  L +   T+  ++  +M+KT ++ R   + + +R
Sbjct: 181 DVALTSRELEVLRLLAQGMSNGEMARHLYVEPTTIKYHLTGLMQKTGSRDRLQTVLWGIR 240

Query: 243 NNIV 246
             +V
Sbjct: 241 AGLV 244


>gi|298251534|ref|ZP_06975337.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546126|gb|EFH79994.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 201

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 16/145 (11%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             L     +    F                +       + +   L  +    R++     
Sbjct: 71  TALPSCRAVILTTFGRSGYLRRAMESGAVGFLLKDAPASELASALRRVMHGERVVDP--- 127

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            E+ LLA  + N              LT RE E L     G +  EIA  L +S  TV N
Sbjct: 128 -ELALLALSEGN------------NPLTHREREVLVAALPGLSHAEIATRLALSEGTVRN 174

Query: 220 YIASIMRKTATKTRSGAIAYAVRNN 244
           ++++ M+K     R  A   A +  
Sbjct: 175 HLSAAMQKLGAHNRMEAARLAEQKG 199


>gi|261218338|ref|ZP_05932619.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320813|ref|ZP_05960010.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923427|gb|EEX89995.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293503|gb|EEX96999.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 157

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              +    +   LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R
Sbjct: 81  PEIESPIARLRTLTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSR 140

Query: 234 SGAIAYAVRNN 244
           + A+    R  
Sbjct: 141 TQAVILLSRIG 151


>gi|260427555|ref|ZP_05781534.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260422047|gb|EEX15298.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 233

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LTG++   L+ I EGK + +IA  L I+  TV  ++ +IMRK    +R+ A+  A
Sbjct: 163 LTGQQARILSLICEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVHSRTQAVLIA 217


>gi|302525406|ref|ZP_07277748.1| predicted protein [Streptomyces sp. AA4]
 gi|302434301|gb|EFL06117.1| predicted protein [Streptomyces sp. AA4]
          Length = 237

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 89  CMALSEKDKYYNVLQRPT---ELFCPVFHTLPEN-ITPPAGMDNRYCSLTFDVARIRIGL 144
            + L        VL+       +        PE  +   A     + S   DV  + I +
Sbjct: 78  DLGLPGVAGAAAVLEVAELGHHVLVVSAQAEPETVLAAIAAGAKGFLSKDVDVDELLIAI 137

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW---GKDFELTGREVECLTWISEGK 201
             +   G             ++A  A M    +        + EL+ REV+ L  ++ G+
Sbjct: 138 RAVAGGG-----------AYVSAVVAGMIIKDNTDRPVTRPEMELSPREVQVLRLVAAGE 186

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +IA IL I   TV  Y+  I  KT  + R G +  A+R  +V
Sbjct: 187 RDVDIARILDIGVRTVRGYLDRIRDKTGERRRPGLVKEAIRRGLV 231


>gi|226225845|ref|YP_002759951.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089036|dbj|BAH37481.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 231

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 12/184 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR-------PTELFCPVFHTLPE-NITP 122
           E+    ++  D     +  +  + + +  N  +           +     HT  E  +  
Sbjct: 48  ERLDPHVIVMDLSMPDMDGLTATRELQKVNAGRVHPADEPATRRVLVLTMHTEDEHLVAL 107

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   +     +   +  +      +       +    A      + +     +
Sbjct: 108 LEAGAGGYLLKSVADRELVDAIRTVAAGDVYVQPSAARAL----ARGLAKREGHADERAR 163

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE   L  ++EG T+ EI   L IS  TV+ Y   I  K     R+  + +A++
Sbjct: 164 FEKLTDREQVVLKMVAEGYTAPEIGEHLTISPKTVDTYKQRIGEKLGLTHRTDYVKFALK 223

Query: 243 NNIV 246
             ++
Sbjct: 224 LGLL 227


>gi|212640294|ref|YP_002316814.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561774|gb|ACJ34829.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 199

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 43/78 (55%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +     +  +     LT  E++ L  +++ +TS +I+  L IS+ T+  +++SI  K 
Sbjct: 121 EKHFLVDSETMYSTKHGLTNIEIDILQMLADDQTSVQISERLKISKRTMERHLSSIFEKL 180

Query: 229 ATKTRSGAIAYAVRNNIV 246
              +R+GA+A A+R  ++
Sbjct: 181 GVLSRTGAVAEALRLQLI 198


>gi|294811011|ref|ZP_06769654.1| Transcriptional regulator, LuxR family [Streptomyces clavuligerus
           ATCC 27064]
 gi|294323610|gb|EFG05253.1| Transcriptional regulator, LuxR family [Streptomyces clavuligerus
           ATCC 27064]
          Length = 914

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 7/153 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+E   YY  + RP +L       L +     A +     +       +     L    
Sbjct: 764 PLAEAVAYYRGVARPLDLG----QALEDGAAVRAALGEPAAARELLQQALERYARLGAAW 819

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                  RL  +G+    +A         W     LT  E+     +++G+++ EIA  L
Sbjct: 820 DARRAVGRLRALGVRTGPRAARNGRPSTGWAA---LTPAELRVAHRVAQGRSNPEIAAEL 876

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +S  TV  +++SI+ K   ++R+     A   
Sbjct: 877 FLSPRTVQTHVSSILTKLGARSRTEVARQAAER 909


>gi|284992384|ref|YP_003410938.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065629|gb|ADB76567.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 236

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 35/56 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +  LT RE + L  + +G+++ +I   L IS +TV +++ +I+RK   + R+ A++
Sbjct: 157 EVPLTRRESDVLDELIQGQSNRQIGRNLFISEDTVKSHVKAILRKLGARDRAHAVS 212


>gi|241666813|ref|YP_002984897.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862270|gb|ACS59935.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 210

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E   ++  G+ + +IA  LGIS  TV  +   +M K   ++ + A++ A    +
Sbjct: 141 LSPREAEVFRFLIRGRLNKQIAHALGISERTVKVHRHQVMEKLGVRSLAEAVSIAANIGL 200

Query: 246 V 246
           +
Sbjct: 201 I 201


>gi|114764255|ref|ZP_01443483.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114543203|gb|EAU46220.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 234

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D    +   LT ++   L+ I EGK + +IA  L I+  TV  ++ +IMRK    +R+ 
Sbjct: 154 PDDALARLATLTNQQARILSLICEGKLNKQIAYDLTIAETTVKAHVTAIMRKLGVHSRTQ 213

Query: 236 AIAYA 240
           A+  A
Sbjct: 214 AVLIA 218


>gi|271964503|ref|YP_003338699.1| protein kinase [Streptosporangium roseum DSM 43021]
 gi|270507678|gb|ACZ85956.1| protein kinase [Streptosporangium roseum DSM 43021]
          Length = 792

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           AR  +G        R   R    E    A  +           G+   LT RE+E    +
Sbjct: 676 ARRALGEPAFNAAVRRGARLPYEEALAYALEEGAPGDGSQAEEGRQAPLTRREMEIAQLV 735

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G ++ EIA  L I++ T   ++  I+ K    +R+    +
Sbjct: 736 AQGMSNKEIAAALVIAQRTAEGHVEHILSKLGFTSRAQVAVW 777


>gi|256824492|ref|YP_003148452.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687885|gb|ACV05687.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 228

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 5/158 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +      RP  +    F      +       + +     D  +I   +      
Sbjct: 71  GIEATRQLAARASRPAIVVMTTFEGDDTVVRALGAGADGFLLKAEDPRQIIDAVRSAAAG 130

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAV 208
              +          L        ++      ++    LT RE +    + EG T+ +IA 
Sbjct: 131 HSPLSPTSARS---LVRLVGPGSRADLASRARELAAGLTERERQVAALVGEGLTTPQIAA 187

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  TV   +A + RK   + R+    +A R  ++
Sbjct: 188 RLFVSEATVKTQLAEVQRKWGCENRTQVAVWADRAGLI 225


>gi|255034528|ref|YP_003085149.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254947284|gb|ACT91984.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 206

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 10/172 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +     IV SD    L     +    +      +   +   V+                Y
Sbjct: 45  DPIFLDIVLSD--IGLPGESGIKGISRIKRRAPKCGVMMLTVYDDASRIFQALCNGATGY 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                 + +IR  +  L+  G  +          +A      F   +     +  LT RE
Sbjct: 103 LLKQTPLPQIREAVTSLYEGGAPMSPG-------IARKVVEYFNPKNAGQLSE-NLTPRE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + +  I EG T+ E+AV + IS  TV  +I +I  K    +R   I+   R
Sbjct: 155 AQIVLAIEEGLTNKEVAVRMDISLETVKYHIKNIYEKLQVNSRHALISRKFR 206


>gi|299147639|ref|ZP_07040703.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23]
 gi|298514426|gb|EFI38311.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23]
          Length = 257

 Score = 78.5 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI       ++
Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256


>gi|329934840|ref|ZP_08284881.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305662|gb|EGG49518.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 209

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 19/157 (12%)

Query: 91  ALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +S  D    +  R      L    F                +      V  +   +  +
Sbjct: 67  GMSGLDAAAELRVRVPGCRVLILTTFGRPGYLRRAMEAGAAGFLVKDGPVEELAAAVRRV 126

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               +++          LA    +   +          LT RE + L   ++G T  +IA
Sbjct: 127 LAGEQVVDP-------ALAMAALSAGPN---------PLTPRECDVLRSAADGATVADIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L +S +TV NY++S++ KT T+ R+ A+  A  + 
Sbjct: 171 AELHLSESTVRNYLSSVIGKTGTRNRTEALREARHHG 207


>gi|294631136|ref|ZP_06709696.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. e14]
 gi|292834469|gb|EFF92818.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. e14]
          Length = 101

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + LT +     + EI+  LGI+  TV  ++ ++M K    +R+ A  YA  ++
Sbjct: 36  LTPRERQVLTLLGHAADNREISRRLGIAERTVKAHLTNLMTKIKVTSRTEAALYAYAHH 94


>gi|312200777|ref|YP_004020838.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311232113|gb|ADP84968.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 225

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214
           D L    + A   A    +      +     LTGRE + L  ++ G+T++EIA  L I+ 
Sbjct: 131 DALIAPAVTARLLAAFADAGPGRPPRQPVEPLTGREEQVLAAVARGRTNNEIAAELYITL 190

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +TV  ++AS+M K A + R     +A    
Sbjct: 191 STVKTHVASLMAKLAARNRVEIAIWAYETR 220


>gi|259418943|ref|ZP_05742860.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
 gi|259345165|gb|EEW57019.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
          Length = 214

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REVE L+ +  G+++ EIA  L +   T+  ++ ++ RK   K R+ A   A    
Sbjct: 153 QLSPREVEVLSGLCRGQSNKEIARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAG 212

Query: 245 I 245
           +
Sbjct: 213 L 213


>gi|254295070|ref|YP_003061093.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043601|gb|ACT60396.1| two component transcriptional regulator, LuxR family [Hirschia
           baltica ATCC 49814]
          Length = 302

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              + F LT RE E L W+S GK +  I+ ILGIS  T+N ++  +  K   +
Sbjct: 235 RLSQQFNLTQREAEVLLWVSFGKPNRVISEILGISPRTINKHLEHVFEKMGVE 287


>gi|156976607|ref|YP_001447513.1| transcriptional dual regulator NarL [Vibrio harveyi ATCC BAA-1116]
 gi|156528201|gb|ABU73286.1| hypothetical protein VIBHAR_05381 [Vibrio harveyi ATCC BAA-1116]
          Length = 204

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 12/131 (9%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEI--------GLLAA 167
                G + R   LT   +   I  ++       +L     D L ++           + 
Sbjct: 64  ALRADGCEARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDELVDLLKQAHEGDKAYSQ 123

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A      +        LT RE + L  ++ G  + +IA  L IS +TV  ++ S+++K
Sbjct: 124 AVAKYLNEREGQEDVFDTLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKK 183

Query: 228 TATKTRSGAIA 238
               +R+ A  
Sbjct: 184 LKVPSRTAATV 194


>gi|99080801|ref|YP_612955.1| two component LuxR family transcriptional regulator [Ruegeria sp.
           TM1040]
 gi|99037081|gb|ABF63693.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           TM1040]
          Length = 214

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REVE L+ +  G+++ EIA  L +   T+  ++ ++ RK   K R+ A   A    
Sbjct: 153 QLSPREVEVLSGLCRGQSNKEIARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAG 212

Query: 245 I 245
           +
Sbjct: 213 L 213


>gi|46205763|ref|ZP_00210019.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 217

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 8/169 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDN--RYCSLTFD 136
           P  L+  M +   D    ++    +RP      +   L +    PA       Y      
Sbjct: 48  PDALLLDMRMPVMDGLDALVAIHRERPRTAVVVLTSFLADEYVLPALRAGAAGYLLKDST 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +  G+        I+         LLAA   +          +   L  +E E +  
Sbjct: 108 PEELHHGIRAAVAGDSILSPA--VARHLLAAAGGDGTARRADARRRLARLAPQEQEVVAA 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ G ++ EI   L ++ +TV  Y+A  M K  T  R+     A    +
Sbjct: 166 LAGGLSNAEIGRRLFLAESTVKAYLAHAMTKLGTTNRTQTAILAHEAGL 214


>gi|310815269|ref|YP_003963233.1| two-component regulator [Ketogulonicigenium vulgare Y25]
 gi|308754004|gb|ADO41933.1| two-component regulator [Ketogulonicigenium vulgare Y25]
          Length = 768

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +L   +    LR  L +  LL+ +        D   G    LT +E+  +  + EG T+ 
Sbjct: 669 LLDAVEHDPRLRRFLRQSSLLSQHVQG---GVDSDRGAALGLTRQEMRAMYALIEGATNK 725

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           EIA +LG+S  TV  ++ ++ RK    TR+  +  A 
Sbjct: 726 EIAKLLGLSEATVKFHLKNLYRKLGCATRAE-VRIAA 761


>gi|307323202|ref|ZP_07602412.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306890691|gb|EFN21667.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 791

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           RL     L     +   S +    G+   LT RE E    +++G ++ EIA  L I++ T
Sbjct: 689 RLSYTEALVYALEDELPSEETAVGGRPSPLTPRESEIAQLVAQGLSNKEIASSLVIAQRT 748

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNN 244
              +I  I+ K    +R+    +    +
Sbjct: 749 AEGHIEHILSKLGFTSRAQVAVWVAEQH 776


>gi|271964642|ref|YP_003338838.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507817|gb|ACZ86095.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 325

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +ELTGRE+E +T ++ G ++ +IA  L +S  TV  ++  I  K   ++R+     A+ 
Sbjct: 258 PYELTGREIEVITRVALGDSNPQIAAALVLSVRTVTTHLEHIFTKLGCESRTRLTTKALA 317

Query: 243 NNI 245
             +
Sbjct: 318 EGL 320


>gi|229115274|ref|ZP_04244684.1| Response regulator [Bacillus cereus Rock1-3]
 gi|228668414|gb|EEL23846.1| Response regulator [Bacillus cereus Rock1-3]
          Length = 195

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 87  VRCMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   ++  +    + +  +   L    F      +         Y     D  RIR  +
Sbjct: 39  VRMPNMNGVEATKLICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 98

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I       +N+ +S +     D  L T RE+  +  I++G ++
Sbjct: 99  KGVYNGQTVMQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSN 152

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 153 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 188


>gi|149190820|ref|ZP_01869085.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148835382|gb|EDL52354.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 211

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA
Sbjct: 146 AKSNPLSRREESVLKLVAQGCSSKKIAQMLDISYRTVETHRQNIKHKLDLHSTAELAKYA 205

Query: 241 VRNNI 245
           + N +
Sbjct: 206 LENGL 210


>gi|38230165|gb|AAR14179.1| AHL receptor-like protein [uncultured bacterium]
          Length = 73

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 29/45 (64%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           CL W SEGKTS EIA ILGI+  TVN ++  + R T +  R  AI
Sbjct: 29  CLFWASEGKTSGEIACILGITERTVNYHLNQVTRXTGSMNRYQAI 73


>gi|296160668|ref|ZP_06843483.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295889194|gb|EFG68997.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 292

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 22/228 (9%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +LN   E+R    + L  + D LAR             +      +     L++ W  + 
Sbjct: 5   ILNSNAERRDGLKA-LLRQIDRLARFNEAQDWRQVERPLKRQRPDL-----LVIDWQDWM 58

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
                  + S +P      + ++      + +     +   V   +P +  P        
Sbjct: 59  SIADTRHLLSHYP-----DLRIAVLTDQISPVSVRELMDEGVLGVVPRDTDP-------- 105

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
           C +      + +G   + P    +      +I  +  +                 L+ R+
Sbjct: 106 CLIVRAFEMVLLGGHYVPPGALALDPPLPPDIA-IRPFDEKSPPPRRTKLAN--GLSPRQ 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + +  +  G T+  IA  LGIS  TV  ++ SI ++     R+ A+A
Sbjct: 163 QQIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAVA 210


>gi|284042706|ref|YP_003393046.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946927|gb|ADB49671.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 81

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G+   LT RE+E L  +++G  +  IA  LGI+  TV  ++ ++ R+     R  A  Y 
Sbjct: 15  GRLAALTPRELEVLRLVTKGDRTARIAQQLGITEPTVKRHLTNLYRRLDVTNRVQAATYY 74

Query: 241 VRN 243
           V++
Sbjct: 75  VQH 77


>gi|260459597|ref|ZP_05807851.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034399|gb|EEW35656.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 222

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE E L  +S+G T+ +IA   GIS NTV  ++ ++  K   + R+ A+A
Sbjct: 155 QLTVRERELLAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVA 208


>gi|229017120|ref|ZP_04174036.1| Response regulator [Bacillus cereus AH1273]
 gi|228744179|gb|EEL94265.1| Response regulator [Bacillus cereus AH1273]
          Length = 195

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            +   L    F      +         Y     D  RIR  +  ++    ++    L +I
Sbjct: 57  TKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTVMQDVVLDKI 116

Query: 163 GLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
                  +N+ +S +     D  L T RE+  +  I++G ++ EI+  L IS  T+ NYI
Sbjct: 117 K------SNLMESKEEESKIDKSLFTERELSIIALIAKGFSNKEISKQLFISEGTIANYI 170

Query: 222 ASIMRKTATKTRSGAIAY 239
            S++ KT  + R+    Y
Sbjct: 171 TSVLGKTGLEHRTQIAIY 188


>gi|149927326|ref|ZP_01915582.1| putative DNA-binding response regulator [Limnobacter sp. MED105]
 gi|149824040|gb|EDM83263.1| putative DNA-binding response regulator [Limnobacter sp. MED105]
          Length = 211

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 78/231 (33%), Gaps = 25/231 (10%)

Query: 19  RTSFVSHLPTRSDLLARMIPLD---CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +   V  LP    LLA          T+     + A  +      F L   DL  +    
Sbjct: 3   KILIVDDLPQARSLLANAAEKAFPETTIELADSLRAGQQAAANCQFDLALIDLLLQDGHG 62

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           + + S+       C           V+         +F  L          D     L F
Sbjct: 63  TELISEMSHTQPNC---------TLVVASVMGDDDNLFKALQAGAQGYLLKDQSQDQLIF 113

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            ++ I  G + L P              L+  +Q N  +           L+ RE+E L 
Sbjct: 114 QLSGIANGSLPLSPSIAR---------KLMQYFQPNQGEQSASTAV----LSVREIEVLG 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++G    +IA  L IS +TV +++ +I RK    +R+ A   A    ++
Sbjct: 161 FLAKGIRLVDIAKQLEISHHTVGDHVKNIYRKLNINSRAEAAIKAQGFGLL 211


>gi|333025578|ref|ZP_08453642.1| putative two-component system response regulator TcsR2
           [Streptomyces sp. Tu6071]
 gi|332745430|gb|EGJ75871.1| putative two-component system response regulator TcsR2
           [Streptomyces sp. Tu6071]
          Length = 198

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            + +   RL EI       +         D     D  L+ RE E L + ++G    EIA
Sbjct: 100 PKTVSAQRLAEIIRTVHAGSRYVDPELAADAIAAGDSPLSAREAEVLEYAADGAPVAEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
              G+S  TV NY++S + K   + R  A+  A    
Sbjct: 160 QRAGLSPGTVRNYLSSAVTKLGAENRHAAVRTARSRG 196


>gi|320532105|ref|ZP_08032984.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135680|gb|EFW27749.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 226

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 15/175 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           P  L+  + +   D      Q   E     +      +  E I     M  R   +  DV
Sbjct: 47  PDILLMDIQMPGGDGLSAAEQILAEDGGARIVFLTTFSDDEYIVRALKMGARGYLIKQDV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----------SYDVHWGKDFELT 187
           A++   L  +     ++  + L     +        +          + D+       LT
Sbjct: 107 AQVAPALRSVMAGVCVLEGEVLERSTTMGLSGGTAGREQSEGSRGPSAKDLRSTAFAALT 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE E +  ++EG  + E A  L +S  TV N+I++I+ K   + R+       R
Sbjct: 167 DREYEVVEAVAEGLDNAEAAARLFVSEGTVRNHISAILAKLGLRNRTQVAVMYYR 221


>gi|294142434|ref|YP_003558412.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328903|dbj|BAJ03634.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 221

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 156 LTNRERTIIKLVSSGARNKEIAHQLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|291301148|ref|YP_003512426.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570368|gb|ADD43333.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 214

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 7/166 (4%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           P  ++  + +   D       +L            T  ++      +    C     + +
Sbjct: 48  PDLVLMDLRMPGMDGITATQRILAERPSTRVVALTTFDDDDHLYPALAAGACGF---LVK 104

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWIS 198
                 LL    +    D  +  G++     +  +    V      +LT RE E L  + 
Sbjct: 105 DTSPNELLEAIRKAADGDTPFSAGVVKRIVDSAVRARASVPTATLPKLTTREREVLALVG 164

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            G  + +IA  L +   TV  +IAS+M KT    R      AVR+ 
Sbjct: 165 AGYANVDIAERLHLGVTTVKTHIASLMTKTGCSNRVRLAVLAVRSG 210


>gi|224825157|ref|ZP_03698263.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224602828|gb|EEG09005.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 215

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           + Y   +  +      +   LT RE E L  ++ G ++  +A  L IS  TV  +  ++ 
Sbjct: 133 SYYSHAVTHALIEPAPQPDPLTEREREVLLLLAAGHSNKMVAASLEISVRTVEAHRLNLR 192

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK   +  +  + YA+    +
Sbjct: 193 RKLGAENVAALVKYAMERGWI 213


>gi|304385722|ref|ZP_07368066.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328226|gb|EFL95448.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284]
          Length = 201

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE E L   + G  + EIA  L +S  T+ NY+++I  K   + R  A+  A 
Sbjct: 137 EQSPLTKRETEVLKVAASGMPTKEIAQQLFLSEGTIRNYLSAIFSKLGVRNRLEAVELAQ 196

Query: 242 RNNIV 246
            N  +
Sbjct: 197 NNRWI 201


>gi|296123119|ref|YP_003630897.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296015459|gb|ADG68698.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 284

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGR++E L  ++ G +  EIA ++ +S+ +V+++   IM K     R     +A+R  +
Sbjct: 222 LTGRQLEVLRHLANGASVKEIARLMHLSQKSVDSHKYRIMHKLGIHDRVELARFAIREGL 281


>gi|260590788|ref|ZP_05856246.1| transcriptional regulator [Prevotella veroralis F0319]
 gi|260537274|gb|EEX19891.1| transcriptional regulator [Prevotella veroralis F0319]
          Length = 217

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 158 RLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR-N 215
            L     L  + ANM      +   +   LT  E+E L  I+ G  + EIA    IS  +
Sbjct: 121 NLHGNHYLCQHAANMLLAPVAIPEKERVRLTKTEIEVLKDIALGMKTREIAEK-RISSFH 179

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TVN +  +I RK        A  YA+R  +V
Sbjct: 180 TVNTHRKNIFRKIGVNNAHEATRYAIRTGLV 210


>gi|163800334|ref|ZP_02194235.1| nitrate/nitrite response regulator protein [Vibrio sp. AND4]
 gi|159175777|gb|EDP60571.1| nitrate/nitrite response regulator protein [Vibrio sp. AND4]
          Length = 210

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQ-------- 169
                G D R   LT   +   I  ++       +L+D   +  +GLL            
Sbjct: 70  ALRTDGCDARIVILTVSDSPADITAIVRSGADGYLLKDTEPDELVGLLKQAHKGDKAYSQ 129

Query: 170 --ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A    +          LT RE + L  +S G  + EIA  L IS +TV  ++ S+++K
Sbjct: 130 AIAEYLIANKGQENVFDTLTDRETQILKEVSRGYRNKEIAEHLFISESTVKVHMKSLLKK 189

Query: 228 TATKTRSGAIA 238
               +R+ A  
Sbjct: 190 LKMPSRTAATV 200


>gi|329947955|ref|ZP_08294856.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523094|gb|EGF50195.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 242

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 61/179 (34%), Gaps = 13/179 (7%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAG 125
           + +   + S     L+  + +   D      +          +     ++  + +     
Sbjct: 45  RAVLRFLQSHQIDVLITDVHMENMDGVEMTREVIRTSPSTRVILLTTVNSDEDLLQGLGA 104

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +   +     I   +  +    +++          L  Y     +  D        
Sbjct: 105 GASGFLLKSAPAEEIIAAVRTVHSGAKVVAPT---PTSRLIDYALASVRGAD----GSVH 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE + L  + EG ++ +IA +L I+  TV ++I  +  KT   +R   + +A ++ 
Sbjct: 158 LSERERDVLHLLCEGASNRKIASLLAIAEATVKSHITGLFHKTGAASRLEIVVWAFKHG 216


>gi|260578669|ref|ZP_05846577.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603166|gb|EEW16435.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 200

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 52/162 (32%), Gaps = 20/162 (12%)

Query: 89  CMALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            + +   +      +    R   L    F              + +         +   +
Sbjct: 55  DIEMPGMNGIDAAKELAGNRCRCLIVTTFGKAGYVKRAMEVGVDGFIVKDTPPEELADAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R+I    L +  LL                 D  L+ RE E    + EGK+S 
Sbjct: 115 RRVHAGLRVIDP-TLAQESLLT---------------PDNPLSERETEVCQQLFEGKSSP 158

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L +S  TV N+I+SIM KT    R  A   A  N  +
Sbjct: 159 AIAKALHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKTNGWI 200


>gi|158337425|ref|YP_001518600.1| hypothetical protein AM1_4304 [Acaryochloris marina MBIC11017]
 gi|158307666|gb|ABW29283.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 464

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + +L+ RE + L  + +G    +IA  L IS +TV  +I +I+ K   KTR  A
Sbjct: 399 EQQLSARERDVLALLVQGFRDRDIAEQLFISDSTVKFHINNILVKLNAKTRLQA 452


>gi|120598493|ref|YP_963067.1| response regulator receiver protein [Shewanella sp. W3-18-1]
 gi|120558586|gb|ABM24513.1| transcriptional regulator, LuxR family [Shewanella sp. W3-18-1]
          Length = 211

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 15/176 (8%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +  ++ +   +V      DL +           +   R   +  P              
Sbjct: 41  LEHIKDNQASMVVIDLATVDLQKAYQFQRSLAREHPSVRVVYIQFPKQVDARFLTQSATT 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y      +A I +GL  +    R+I              Q     + D    +D E
Sbjct: 101 AGVFYLDAG--IAEISLGLSNILRGHRVIP------------MQLINGVNDDFGLFEDTE 146

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 147 PLTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|320534446|ref|ZP_08034923.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133339|gb|EFW25810.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 244

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G T+ EI     +S  TV  +++ ++ KT  + R   +  A+R  +
Sbjct: 175 LTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTGCRDRVQLVLLALRGGV 234

Query: 246 V 246
           V
Sbjct: 235 V 235


>gi|317488814|ref|ZP_07947347.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|316912119|gb|EFV33695.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 462

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWIS 198
             +++        RD   E       +     +              LT RE E L +++
Sbjct: 359 AFVMVLSSYMRRTRDAHDEQRAAEHAEDEATPASSPDRCAQLADAHNLTAREQEILAYLA 418

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EG +   I+ +L IS NTV  +I +I RK    +R
Sbjct: 419 EGHSGAYISDVLFISPNTVRTHIHNIYRKLDVSSR 453


>gi|188584049|ref|YP_001927494.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347547|gb|ACB82959.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 263

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T +V      ++ +   GR+ L           A    + ++          L+ RE
Sbjct: 111 LLKTLEVVIADCAVLPMSFLGRLCLAAEPVRAPGPVAALTGLQRADGTSLS---SLSSRE 167

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  L  ++ G+++  IA  L I+  TV  ++ +I+RK   K R+ A  +A+   IV
Sbjct: 168 VNILEGLALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKGIV 223


>gi|154688084|ref|YP_001423245.1| YocG [Bacillus amyloliquefaciens FZB42]
 gi|154353935|gb|ABS76014.1| YocG [Bacillus amyloliquefaciens FZB42]
          Length = 199

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++  LT RE E L  +++GK + EIA  L I   TV NY++ I+ K   K R  AI  +
Sbjct: 133 SEENPLTEREKEVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNRIEAITRS 192

Query: 241 VRNN 244
               
Sbjct: 193 KEKG 196


>gi|83748008|ref|ZP_00945038.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551]
 gi|207738688|ref|YP_002257081.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609]
 gi|83725310|gb|EAP72458.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551]
 gi|206592056|emb|CAQ58962.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609]
          Length = 252

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 18/179 (10%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAG 125
           +D +V+ D+P + +  +  +       +++R      PV+         T P  +     
Sbjct: 53  MDYVVTVDYPNEHLLAIRNAAGGIDTPIMRRWLSTRRPVYFDAASPWEGTDPVWLEKFVK 112

Query: 126 MDNRYCSL--TFDVAR---IRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKS 175
            D R C+    FD A           L       L   L ++     G L    A++ + 
Sbjct: 113 HDLRNCAADAVFDEANCVGTYFSFHALPTVEEGCLDATLRDLTPALHGALLRAVASIERD 172

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                     LT RE E    I +G+++ EIA ++  S +TV +Y++SIM KT  + R 
Sbjct: 173 LQQASQALATLTEREREVALLIGQGRSNAEIAQVVCKSESTVKHYLSSIMDKTGCENRV 231


>gi|330959015|gb|EGH59275.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 87

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT +E + L W++ GKT+ EI+ I   S  TV+ + ++I RK    +   A+  A+R  
Sbjct: 23  QLTVKERQILEWVAIGKTAWEISRIQECSEATVHFHTSNIRRKFEVHSLRAALVIAIRQG 82

Query: 245 IV 246
           ++
Sbjct: 83  VI 84


>gi|297193410|ref|ZP_06910808.1| large transcriptional regulator [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297151764|gb|EFH31341.1| large transcriptional regulator [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 141

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 31/82 (37%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           D      LL +YQ                L+ RE E       G T+ EIA  L +S  T
Sbjct: 42  DAARARALLRSYQPAKETRPPGRPSYGDRLSPREREVAELAGTGLTNREIATTLHLSPRT 101

Query: 217 VNNYIASIMRKTATKTRSGAIA 238
           V  ++A  MRK  T +R     
Sbjct: 102 VEQHVARAMRKLGTASRQHLAR 123


>gi|325673433|ref|ZP_08153124.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325555454|gb|EGD25125.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 306

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWG-KDFELTGREVEC 193
           D   IR     L    + +    L E +  L+   A +  + D         L+ REV+ 
Sbjct: 193 DAEEIRDVHAELRSIAQTVDDPALQEQLRALSNRLAGVGAADDTDRPTPPVALSPREVDV 252

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L+  + G ++  IA  L +   TV +Y+ S M K    +R  A+  A R  ++
Sbjct: 253 LSHAALGCSNVVIAERLSVKPETVKSYLRSAMSKLDAHSRREAVVAARRLGLL 305


>gi|289642054|ref|ZP_06474207.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508127|gb|EFD29073.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 221

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L      + R  +     +A      F +         ELT RE   L  +++G ++  I
Sbjct: 121 LARAVEAVSRGEVIFGAHVADGVLRHFDAAGAEQPPFPELTERERVVLCLVADGYSTAAI 180

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L ++  TV NY++ I  K   + R+ A   A R  +
Sbjct: 181 AGELALTTKTVRNYLSKIFAKLEVRDRAEAAVIARRAGL 219


>gi|300024660|ref|YP_003757271.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526481|gb|ADJ24950.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 207

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  ++ G T+ +IA   GISRNTV  ++ ++  K     R+ A+A
Sbjct: 144 LTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVA 196


>gi|240144636|ref|ZP_04743237.1| transcriptional regulator, LuxR family [Roseburia intestinalis
           L1-82]
 gi|257203352|gb|EEV01637.1| transcriptional regulator, LuxR family [Roseburia intestinalis
           L1-82]
          Length = 261

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            H   +FEL+ RE E LT +  G T+ +IA  +GIS +TV  ++  I  K    TR+  
Sbjct: 191 AHLAAEFELSEREKEALTCMDGGMTNAQIAENMGISLSTVKKHVYHIFEKVGVDTRAQL 249


>gi|218514343|ref|ZP_03511183.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 113

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L+         L   L++   + A + N  K   +       LT REV+ L  I +G  
Sbjct: 2   ALLNRLANKNAQLEPSLYQTKSVDAARNNALK---LRRDSISALTTREVQILDLICKGTQ 58

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  IA  L +S NTV  ++ +I +K   + R+ A + 
Sbjct: 59  NKIIADKLHLSENTVKVHVRNIYKKMNVRNRTEAASR 95


>gi|160889954|ref|ZP_02070957.1| hypothetical protein BACUNI_02388 [Bacteroides uniformis ATCC 8492]
 gi|270294634|ref|ZP_06200836.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481391|ref|ZP_07940459.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|156860342|gb|EDO53773.1| hypothetical protein BACUNI_02388 [Bacteroides uniformis ATCC 8492]
 gi|270276101|gb|EFA21961.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902487|gb|EFV24373.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 203

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ SG   YAV + 
Sbjct: 137 DLSAREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTIYAVMHG 196

Query: 245 IV 246
            V
Sbjct: 197 YV 198


>gi|301053374|ref|YP_003791585.1| LuxR family response regulator [Bacillus anthracis CI]
 gi|300375543|gb|ADK04447.1| response regulator, LuxR family [Bacillus cereus biovar anthracis
           str. CI]
          Length = 212

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+         L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I        N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------CNLMESKEDECKIDTSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|291537091|emb|CBL10203.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis M50/1]
          Length = 261

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            H   +FEL+ RE E LT +  G T+ +IA  +GIS +TV  ++  I  K    TR+  
Sbjct: 191 AHLAAEFELSEREKEALTCMDGGMTNAQIAENMGISLSTVKKHVYHIFEKVGVDTRAQL 249


>gi|282861134|ref|ZP_06270199.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563792|gb|EFB69329.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 215

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 71/220 (32%), Gaps = 11/220 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++  +   +    +  +   +G++  + V  +    +    +     P  ++  + 
Sbjct: 1   MTIRVLVAEDQSAVRAGLALI---LGSAPDIEVVGEAADGEAAVRLARELRPDVVLMDVQ 57

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRYCSLTFDVARIRIGLML 146
           +   D      Q   E    V      ++              +     +   +   +  
Sbjct: 58  MPRLDGVSATRQVVAERLADVLVLTTFDLDAYVFGALRAGAAGFLLKNTEAHDLLDAVRT 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDE 205
           +     +I         L+A +                + LT RE E L  + +G ++ E
Sbjct: 118 VAGGEGMIAPAVTRR--LIAEFAGATAARDGAPDPAVLDALTRREREVLGCLGQGLSNAE 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L ++  TV  +++ ++ K   ++R  A   A    +
Sbjct: 176 IAGRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGL 215


>gi|260911714|ref|ZP_05918290.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634139|gb|EEX52253.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 318

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 11/215 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +  LD   +    +  L +    S   +     ++E+ +   V S           +   
Sbjct: 104 VAALDEKDNLARLILKLYDEYAHS---IRSHMQYEEKMVFPYVDSLLNNKAQNNYDIETF 160

Query: 96  DKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
            K++     +  EL   +   LP +       +N+  ++ +D+      L+        I
Sbjct: 161 SKHHGQTDVKLRELKNIIIKYLPSDGLR----NNQLTAVLYDIYNNEEWLLHHGQVEDEI 216

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILG 211
               +  +   +       K  ++   K+     L+ RE E +  + +G T+ EIA  L 
Sbjct: 217 FVPAIRRLEAKSKQNDVSVKISNMINQKNDNVDNLSEREKEVIISLVQGMTNKEIADHLC 276

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS NTV  +  +I RK    + +G   YA+ NN+V
Sbjct: 277 ISINTVITHRRNIARKLQIHSPAGLTIYAIVNNLV 311


>gi|226947735|ref|YP_002802826.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
 gi|226840805|gb|ACO83471.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 210

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + RE++ +  ISEG ++ EI+  L IS  TV NYI+SI+ KT  + R+    Y
Sbjct: 148 FSRREIDVIEAISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQIAIY 201


>gi|170725332|ref|YP_001759358.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169810679|gb|ACA85263.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 209

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
            LT RE++ L  ++EGK++  I+ +L IS  TV  ++ +++RK   K+R+  A+ Y
Sbjct: 151 NLTPRELQILEQVAEGKSNRMISELLHISEGTVKVHVKNLLRKGHAKSRTEMAVRY 206


>gi|34498054|ref|NP_902269.1| LuxR family two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|34103909|gb|AAQ60269.1| probable two-component response regulator, LuxR family
           [Chromobacterium violaceum ATCC 12472]
          Length = 217

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+EG  + +IA  L I+  TV  +  ++MRK           +A+R  I
Sbjct: 157 LTMRENQVLKLIAEGMRNRDIAESLKITIKTVETHRLNLMRKLDAHNAVELTNWAIRLGI 216


>gi|13488505|ref|NP_109512.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14028259|dbj|BAB54851.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 230

 Score = 78.1 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---KDFELTGREVECLTWI 197
            +G   L    R +     +   +L+A   +  +S     G   +  +LT R+ E L  +
Sbjct: 107 GVGSRALAEILRNVAAGESYLSPMLSARLLSDLQSPQSANGVADRLRQLTERQTEILRLV 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +EG ++ E+A+ L +   TV +++  ++ K   + R+ A 
Sbjct: 167 AEGLSNKEVALRLELQEKTVKHHMTGVLSKLNVRNRTEAA 206


>gi|325833702|ref|ZP_08166117.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|325485242|gb|EGC87712.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 462

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            + +D+    +   V       +++        RD   E       +     +       
Sbjct: 339 ASALDDDLVHVAVTVTTTLYAFVMVLSSYVRRTRDAHDEQRAAEHAEDEATPASSPDRCA 398

Query: 183 DF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  LT RE E L +++EG +   I+ +L IS NTV  +I +I RK    +R
Sbjct: 399 QLADAHNLTAREQEILAYLAEGHSGAYISDVLFISPNTVRTHIHNIYRKLDVSSR 453


>gi|312867968|ref|ZP_07728172.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096372|gb|EFQ54612.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
          Length = 199

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +LA  +    +  +        L+ +E   L  +++G ++ EIA  L +S  T+ NY++
Sbjct: 116 AVLAGQKEYSPELMEGILTHPNPLSPQEQAVLKEVAKGASNQEIADRLFLSNGTIRNYMS 175

Query: 223 SIMRKTATKTRSGAIAYAVRNN 244
           +I+ K   + R+ A   A    
Sbjct: 176 AILTKLNAENRTEAARIAQEKG 197


>gi|300785223|ref|YP_003765514.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
 gi|299794737|gb|ADJ45112.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
          Length = 764

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             ++P   +D +  +L    AR  +G               L ++   A  +    ++  
Sbjct: 639 GEMSPYQAVDEQCAAL----ARKALGEDAFAAAFAEAAGSGLDDVVRYALRERPATRAAG 694

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT R+ E    ++ G ++ EIA  L +S  TV  ++ +I+ K    +R+   
Sbjct: 695 -KAAEPGGLTRRQREIAELVARGMSNKEIAAALVLSGRTVEGHVENILVKLGLTSRTQVA 753

Query: 238 AY 239
           ++
Sbjct: 754 SW 755


>gi|298244807|ref|ZP_06968613.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297552288|gb|EFH86153.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1076

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 74/233 (31%), Gaps = 42/233 (18%)

Query: 14   REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            +   QRT     LP    LL          +    +  L       H LL      Q+  
Sbjct: 886  QGRSQRTVLRVALPVLHQLLREGKARSRPGNSLELLMLLALI----HDLLGEHARAQD-- 939

Query: 74   LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
                        LV  +     + Y   + R   L  P+   + E+ +P   M  +    
Sbjct: 940  -----------LLVTVLESVRLEGYLRSVVRELPLLGPLLRKIAES-SPALSMSFQSVLA 987

Query: 134  TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
               +      L +  P    +LR+R+     +                    L+ RE E 
Sbjct: 988  AASLNP----LSIPQPDQLALLRERMRAGAQI--------------------LSPREREV 1023

Query: 194  LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +  G ++ EIA  L I+  TV  ++ +I+       R  A+A A    ++
Sbjct: 1024 LLLLGTGASNQEIANQLIITLGTVKRHVNTILAALQVSNRMQAVARARELALL 1076


>gi|237747660|ref|ZP_04578140.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
 gi|229379022|gb|EEO29113.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
          Length = 206

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKT 202
           L   G   L  RL E  +    ++   +  D     +      LT RE+E    +++G +
Sbjct: 105 LSSAGIPALMARLHESAVHTNPESQKNEETDSFTAAETNPLSCLTRRELEIARLVNKGCS 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  +A  L I+  TV  +++SI  K   K R   + +
Sbjct: 165 NKAVAKELDIAERTVKAHLSSIFEKLDVKDRLQLVVF 201


>gi|261346507|ref|ZP_05974151.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM
           4541]
 gi|282565500|gb|EFB71035.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM
           4541]
          Length = 222

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             ++DV        T +E E +  + EG ++  IA++LGIS +TV  ++ +I  K     
Sbjct: 146 LMTFDVLPDSLVSYTPKEQEIIHLVREGASNKRIALLLGISLSTVKTHLRNIFTKANVSN 205

Query: 233 RSGAIA 238
           R+  ++
Sbjct: 206 RTELVS 211


>gi|56459266|ref|YP_154547.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56178276|gb|AAV80998.1| Response regulator, LuxR family (CheY-HTH) [Idiomarina loihiensis
           L2TR]
          Length = 214

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             R +L D++ E+ +L     + F +      +   LT +E++ +  ++ G  + EIA  
Sbjct: 123 YPRSLLSDKIEEM-MLRRQADDSFTTV----SQINSLTPQELKVIELVATGARNKEIAEH 177

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGA 236
           L IS +TV  +++SI RKT  + R   
Sbjct: 178 LNISAHTVKTHLSSIFRKTGARNRVEL 204


>gi|300771877|ref|ZP_07081748.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761263|gb|EFK58088.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 459

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 36/59 (61%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           V   ++++LT RE++ L  + EG ++ E+   L IS NTV  +++++  K   K+R+ A
Sbjct: 390 VFLKENYQLTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQA 448


>gi|288941613|ref|YP_003443853.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288896985|gb|ADC62821.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 209

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             +  +LT RE E LT  + G T+ +IA  LGIS  TV N+ A +M K      +  
Sbjct: 137 RERFRQLTPREHEVLTLTTRGLTNKDIARQLGISPRTVENHRARMMEKMGAGNLAEL 193


>gi|239981109|ref|ZP_04703633.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291452977|ref|ZP_06592367.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355926|gb|EFE82828.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 224

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     D   I   +  +      + R  L    +    +    +      G D  LT 
Sbjct: 102 GFLLKDSDPEEILRAIHHIAAGHGTLDR-TLTRRIVAEYVERRRLRPVTATRGIDV-LTA 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  +++G ++++IA  L +   TV +++A ++ K   ++R  A  +A +N +V
Sbjct: 160 RERDILLLLAQGMSNEQIAGALVVEVTTVKSHLARMLPKLGVQSRLQAAVWAYQNRVV 217


>gi|258653570|ref|YP_003202726.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556795|gb|ACV79737.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 221

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 163 GLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             LAA     F + D        +LT RE E L  I+ G+T+ +IA  L +S  TV N +
Sbjct: 134 ASLAARVTRAFAAPDNPRAAAFPQLTDREREVLDLIAAGRTNAQIAAELFLSGKTVRNNV 193

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
           ++I+ K     R+  I  A    
Sbjct: 194 STILSKLQAGDRANVIIRARDAG 216


>gi|227540152|ref|ZP_03970201.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240013|gb|EEI90028.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 465

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 36/59 (61%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           V   ++++LT RE++ L  + EG ++ E+   L IS NTV  +++++  K   K+R+ A
Sbjct: 396 VFLKENYQLTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQA 454


>gi|153809558|ref|ZP_01962226.1| hypothetical protein BACCAC_03876 [Bacteroides caccae ATCC 43185]
 gi|149127803|gb|EDM19027.1| hypothetical protein BACCAC_03876 [Bacteroides caccae ATCC 43185]
          Length = 254

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 32/64 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE E L  I +G  S EIA  L +S  TVNN+  +I+ K        AI  A  
Sbjct: 190 DQQLTKREKEILLLIRQGFLSKEIASKLNLSIYTVNNHRKNILAKLNVDNVIEAINRAES 249

Query: 243 NNIV 246
             I+
Sbjct: 250 FGIL 253


>gi|39933929|ref|NP_946205.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39647776|emb|CAE26296.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 225

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +    F V ++   ++ +      +  D   ++   A  + +  +       +   L
Sbjct: 104 ASGFVPKRFGVEKLGEAILRVLDGDVWVPPD--VDLSAAADPETSKLR------DRLVTL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 156 TPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|298251645|ref|ZP_06975448.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297546237|gb|EFH80105.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1081

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 153  IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            I+    L     +      + +  +     +  L+ RE E L  +S G ++ EIA  L I
Sbjct: 990  ILTAGSLNAPSTIQPDHLALLR--ERTRAGEQILSPREREVLLLLSTGASNQEIANQLII 1047

Query: 213  SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  TV  ++ +I+       R+ A+A A   +++
Sbjct: 1048 TLGTVKRHVNTILATLQVSNRTQAVARARELSLL 1081


>gi|295401748|ref|ZP_06811714.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976235|gb|EFG51847.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 223

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 44/110 (40%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V++      L+      +  + +  + LL        K+      +   L+  E E L  
Sbjct: 101 VSKTATSEQLITVIRCALRDEAVIPVHLLRQLHLREVKAKMAENAEHVALSQLEQEILME 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G  + +IA    IS+ +V  +++ I  K    +R  A+  A +  ++
Sbjct: 161 VANGLCNKDIAKKHHISQRSVERHLSRIFTKLHVSSRVEAVEKAKQLGLI 210


>gi|270264708|ref|ZP_06192973.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041391|gb|EFA14490.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 210

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                 +   H  K F LT R+++ L  +  G  +  IA  L IS  TV  +I++I++K 
Sbjct: 132 HEECVNNAHGHLQK-FNLTPRQIDVLIMMMRGFPNKRIAAQLSISEPTVKEHISNILKKI 190

Query: 229 ATKTRSGAI 237
              +R  AI
Sbjct: 191 GVNSRVEAI 199


>gi|260463507|ref|ZP_05811707.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259030832|gb|EEW32108.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 220

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +    LL+  Q+   +  D    +  +LT R+ E L  ++EG ++ E+A+ L +   TV 
Sbjct: 130 MLSARLLSDLQSQ--QPADGMADRLRQLTERQSEILRLVAEGLSNKEVALRLDLQEKTVK 187

Query: 219 NYIASIMRKTATKTRSGAI 237
           +++  ++ K   + R+ A 
Sbjct: 188 HHMTGVLSKLNARNRTEAA 206


>gi|239982332|ref|ZP_04704856.1| chitinase two-component response regulator [Streptomyces albus
           J1074]
          Length = 215

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            ++       L E +            L    A   +  +     G  ++   +    + 
Sbjct: 76  ADVLVLTTFDLDEYVFGALRAGAAGFLLKNTDAPGLLAAVRTVAAGEGLIAPAVTRRLIA 135

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A       +       +   LT RE E L  + EG ++  IA  L ++  T   +++ ++
Sbjct: 136 AFATGRAPRPAGAEPPELAALTRREREVLGCLGEGLSNARIAERLEMAEATAKTHVSRVL 195

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K   ++R+ A   A    I
Sbjct: 196 GKLGLRSRAQAALLAQELGI 215


>gi|15890276|ref|NP_355948.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158472|gb|AAK88733.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 492

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA  + N   +      KD  LT RE + L+ I +G +  E++  L +S++T+ N+IAS+
Sbjct: 408 LAGLRQNSRGASPSASLKD--LTDREEQILSLICDGSSDKEMSDRLNLSKHTIRNHIASL 465

Query: 225 MRKTATKTRSGAIAYAVRNN 244
             K     R+ A+ +A    
Sbjct: 466 YGKIGVNRRTAAVIWARERG 485


>gi|24375469|ref|NP_719512.1| DNA-binding nitrate/nitrite response regulator [Shewanella
           oneidensis MR-1]
 gi|24350319|gb|AAN56956.1|AE015828_12 DNA-binding nitrate/nitrite response regulator [Shewanella
           oneidensis MR-1]
          Length = 209

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           + I       + Y     +   +   L       R+I  +       +A Y   +  + D
Sbjct: 92  DVIRLLRAGADGYLLKDTEPDLLLDKLKNTMSGHRVISEE-------VAEYLYELKNAAD 144

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-A 236
                   LT RE++ L  ++EG ++  I+  L IS  TV  ++ +++RK   K+R+  A
Sbjct: 145 EQEWVS-SLTPRELQILQQLAEGLSNRMISEHLHISEGTVKVHVKNLLRKANAKSRTEMA 203

Query: 237 IAY 239
           + Y
Sbjct: 204 VRY 206


>gi|290956780|ref|YP_003487962.1| luxR-type transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260646306|emb|CBG69401.1| putative luxR-type transcriptional regulator [Streptomyces scabiei
           87.22]
          Length = 293

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 5/132 (3%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIR-----IGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           E +   AG      S    VA  R        ++    G     +R     L+       
Sbjct: 159 ERLRVAAGGSVSAASTEMSVAERRRLVDVCSELVHIASGMPDSPERRQIKALVRRLAGRT 218

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            + +         LT RE E LT ++ G T+ E+A  L IS  TV + + S MRK   + 
Sbjct: 219 AEPFTAEKTARAALTEREREILTKVATGATNREVAAALSISAETVKSSLTSSMRKFGVRN 278

Query: 233 RSGAIAYAVRNN 244
           R   +A A    
Sbjct: 279 RVALVAAAHAQG 290


>gi|229011126|ref|ZP_04168319.1| Response regulator [Bacillus mycoides DSM 2048]
 gi|229166685|ref|ZP_04294435.1| Response regulator [Bacillus cereus AH621]
 gi|228616682|gb|EEK73757.1| Response regulator [Bacillus cereus AH621]
 gi|228750009|gb|EEL99841.1| Response regulator [Bacillus mycoides DSM 2048]
          Length = 212

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 87  VRCMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   ++  +    + +  +   L    F      +         Y     D  RIR  +
Sbjct: 56  VRMPNMNGVEATKLICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I       +N+ +S +     D  L T RE+  +  I++G ++
Sbjct: 116 KGVYNGQTVMQDVVLDKIK------SNLMESKEEESKIDKSLFTERELSIIALIAKGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 170 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|118473214|ref|YP_884744.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174501|gb|ABK75397.1| transcriptional regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 350

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILG 211
           I LR R +    + + Q +  ++           LT RE E L  ++ G T+ ++A  L 
Sbjct: 252 IPLRPRPFRTNTVVSTQTSFTQTSQRRESSRLTILTSREREVLALLASGATNAQLADQLT 311

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ++ +TV +++  I+ K     R+ AI++ +R
Sbjct: 312 VAESTVKSHVKHILHKLGASNRAAAISFYLR 342


>gi|146293428|ref|YP_001183852.1| response regulator receiver protein [Shewanella putrefaciens CN-32]
 gi|145565118|gb|ABP76053.1| transcriptional regulator, LuxR family [Shewanella putrefaciens
           CN-32]
 gi|319426731|gb|ADV54805.1| transcriptional regulator, LuxR family [Shewanella putrefaciens
           200]
          Length = 211

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 15/176 (8%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +  ++ +   +V      DL +           +   R   +  P              
Sbjct: 41  LEHIKDNQASMVVIDLATVDLQKAYQFQRSLAREHPSVRVVYIQFPKQVDARFLTQSATT 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y      +A I +GL  +    R+I              Q     + D    +D E
Sbjct: 101 AGVFYLDAG--IAEISLGLSNILRGHRVIP------------MQLINGVNDDFGLFEDTE 146

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 147 PLTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|296130095|ref|YP_003637345.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
 gi|296021910|gb|ADG75146.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
          Length = 207

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE++ L  ++EG  + EIA  L  S  TV N +  +  +   + RS A+AYA+R  +
Sbjct: 147 LAAREIDVLKLVAEGYDTAEIAQHLAYSERTVKNVLHDVTTRLQLRNRSHAVAYALREGL 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|282864856|ref|ZP_06273910.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282560281|gb|EFB65829.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 282

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 9/152 (5%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIIL 155
                +++   +   V   L        G       +  DV      L  L P+     L
Sbjct: 137 SAARDVEQALAVRDEVRQLLTSTREQLTGTG---PGVWEDVREAHRELRALAPRIADPDL 193

Query: 156 RDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           RD L  + G LA+   +   +          L  REV+ L  ++ G T+   A  LG+  
Sbjct: 194 RDELLSVCGRLASAAGSERPA----GAGFVRLAPREVDVLACVASGATNAVAAERLGLRP 249

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV  Y+ S MRK    TR  A+  A R  ++
Sbjct: 250 ETVKAYLRSSMRKLGAHTRLEAVVAARRAGLL 281


>gi|290954880|ref|YP_003486062.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644406|emb|CBG67491.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 219

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 64/178 (35%), Gaps = 11/178 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDN 128
             V  + P  ++  + + + D    VL+    +  P        F      +T       
Sbjct: 36  ETVRRERPDVVLLDIRMPDVDG-LTVLRELRTMPDPPVVAMLTTFDADEYILTALHSGAA 94

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     +  ++   +  L   G ++          L    +    + D    +   LT 
Sbjct: 95  GFLLKDTEPEQLAHLVRTLVAGGVVLSPKASRT---LLHSHSGTGAAVDEEAARVRLLTA 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  ++EG ++ +I   + +   TV +++++I+ K    +R  A   A R  ++
Sbjct: 152 RERDVLVLVAEGLSNADIGARVHLGAGTVKDHVSAILGKLRVASRVQAALLAQRAGLL 209


>gi|255692220|ref|ZP_05415895.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
 gi|260622084|gb|EEX44955.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
          Length = 219

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  I
Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|163853743|ref|YP_001641786.1| regulatory protein LuxR [Methylobacterium extorquens PA1]
 gi|218532601|ref|YP_002423417.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|240141169|ref|YP_002965649.1| putative two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|254563682|ref|YP_003070777.1| two-component LuxR family transcriptional regulator
           [Methylobacterium extorquens DM4]
 gi|163665348|gb|ABY32715.1| regulatory protein LuxR [Methylobacterium extorquens PA1]
 gi|218524904|gb|ACK85489.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
 gi|240011146|gb|ACS42372.1| putative two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|254270960|emb|CAX26965.1| putative two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens DM4]
          Length = 253

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REV  L  ++ G+++  IA  L I+  TV  ++ +I+RK   K R+ A  +A+   I
Sbjct: 159 LSSREVNILEGLALGESNKVIARNLDIAEATVKVHVKAILRKVRVKNRTQAAVWAMNKGI 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|260175087|ref|ZP_05761499.1| LuxR family transcriptional regulator [Bacteroides sp. D2]
 gi|293371808|ref|ZP_06618218.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|315923316|ref|ZP_07919556.1| transcriptional regulator [Bacteroides sp. D2]
 gi|292633260|gb|EFF51831.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|313697191|gb|EFS34026.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 257

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI       ++
Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256


>gi|197118634|ref|YP_002139061.1| LuxR family helix-turn-helix transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197087994|gb|ACH39265.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter bemidjiensis Bem]
          Length = 216

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 15/220 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R+I  D  V +   M AL E       ++V  +      +      + P  +V  ++
Sbjct: 1   MGIRIILADDHVMFREGMRALLEREED---MVVVAEAGDGVSVVEKTLENMPDVVVLDLS 57

Query: 92  LSEKDKY--YNVLQRPTE---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +   +     +V+ +      +     H+  + +     +  +   L     +  +  + 
Sbjct: 58  MPGMNGTEAASVIHQKVPGIGIIILSMHSDRQYVIEALKLGVKSFILKEWAFQELVTAVR 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              K    L  RL +I  + +  A+  K         + LT RE +    +  GK   EI
Sbjct: 118 CVFKDTSYLSPRLSDI--IISGLADEGKPLG-----KYSLTPREEQAYRLLVAGKNCKEI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L IS  TV  Y   +M+K      +  + +AV+  IV
Sbjct: 171 GYELKISSKTVETYRLKVMKKLNISNIAQLVNHAVQEGIV 210


>gi|311900038|dbj|BAJ32446.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 214

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           L+ RE E L  ++EG  + +I+  L IS  TV  ++  I  K    +R+
Sbjct: 149 LSPREAEILQLLAEGLPNRQISKRLFISEATVKTHLVHIYDKLGVDSRT 197


>gi|163732202|ref|ZP_02139648.1| DNA-binding response regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
 gi|161394500|gb|EDQ18823.1| DNA-binding response regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
          Length = 204

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 75/201 (37%), Gaps = 22/201 (10%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDW-PFDLV----RCMALSEKDKYYNVLQR-P 105
           ++ Y+ A           ++      V S+  PFDLV        ++  D   + +++ P
Sbjct: 16  ISAYLEAEGR--AAVIAVEDYAEAMKVLSNKGPFDLVLLDFGMPGMNGLDGLSDAIKKHP 73

Query: 106 TELFCPVFHTLPENITPPAGMDN--RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
            + F  +  T P  I   A       Y   +     +   +  +      +    + E G
Sbjct: 74  NQPFAILSGTAPNRIAQQAVERGAIGYLPKSMGAKSLVNAVRFMIAGETYVPASLMGESG 133

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                     ++ +  + +  +L+ RE + L+ +  GK++ EIA  L +   T+  ++ +
Sbjct: 134 ----------ETPETEFSR--KLSQRERQVLSGLCTGKSNKEIARDLDLQEVTIKLHVRT 181

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           + +K   K R+ A   A    
Sbjct: 182 LCKKLDAKNRTQAAMIARNAG 202


>gi|154684718|ref|YP_001419879.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350569|gb|ABS72648.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 214

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 20/178 (11%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + +R       +    V + +P   V  +   E D Y             +F  L     
Sbjct: 52  MDIRMPGMDGIETTKAVKARYPSVKVIILTTFEDDHY-------------IFAGLKSGAD 98

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                D     +   +  +  G M+L PK  + +   L  + + A  +    K  ++   
Sbjct: 99  GYLLKDADSDEMIASLQAVYEGKMMLNPKITVSVVKALNNMEIPAVQKEPRTKLKEI--- 155

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               LT RE++    I EGK++  IA  L ++  TV NY++ I+ K     R+    Y
Sbjct: 156 ----LTPRELDVAKHIMEGKSNKRIAADLFLTEGTVKNYVSRILDKLEVSNRTELTLY 209


>gi|148976347|ref|ZP_01813053.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145964170|gb|EDK29426.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 178

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 12/180 (6%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L Q   LD +V  D+P      M+    +KY  +          V    P +      + 
Sbjct: 2   LLQAPNLD-LVIIDYP-----TMSKQYTEKYQELRDDIESDVHEVLLNTPSDFPHSEMLK 55

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
            +Y    F  +     L+  F     IL+  +W    L     + ++         +  +
Sbjct: 56  WQYLVGIFYASDTLDKLVTGFNC---ILQGEMWMSRKLIYQYISFYRERQCAKTSPYYLK 112

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +  + +G ++ +IA  L +S NTV  ++ +  +K   K R  A+ + V+NN+
Sbjct: 113 LTKREQQIIKLLGDGASNTQIADTLYVSENTVKAHLHNTFKKIKVKNRLQALIW-VKNNV 171


>gi|152994713|ref|YP_001339548.1| two component LuxR family transcriptional regulator [Marinomonas
           sp. MWYL1]
 gi|150835637|gb|ABR69613.1| two component transcriptional regulator, LuxR family [Marinomonas
           sp. MWYL1]
          Length = 213

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 39/78 (50%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            ++   S      +  +LT REV  L  ++ G ++ EIA +L IS  TV  +  ++  K 
Sbjct: 135 ASDSLFSLAASPKQSDDLTKREVAVLKALAAGLSNKEIAQLLNISVRTVETHRQNLKNKL 194

Query: 229 ATKTRSGAIAYAVRNNIV 246
              T +G I YA+ N ++
Sbjct: 195 DIHTSAGLIKYALANQLI 212


>gi|332704010|ref|ZP_08424098.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554159|gb|EGJ51203.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 210

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R + +   +    LA   A    S D H      L+ RE + L  I++GKT  EIA  L 
Sbjct: 116 RKVNQGGKYISSSLAERLAFDLDS-DSHKSSHEFLSDREYQVLCMIAQGKTVSEIADTLK 174

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  T++ Y A I+ K   K  +    YA++N +V
Sbjct: 175 LSVKTISTYRARILEKMKMKNNAELTYYAIQNGLV 209


>gi|312198089|ref|YP_004018150.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229425|gb|ADP82280.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 277

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            LLA          D        LT RE++ L  ++EG ++ E A  L +S  TV  Y+ 
Sbjct: 198 KLLAESMLEAMPDQDGRA-----LTRRELDVLRLVAEGLSNAEAAQQLVVSPETVKAYLR 252

Query: 223 SIMRKTATKTRS 234
           +I  K     R+
Sbjct: 253 NIRSKLGVNNRT 264


>gi|261345944|ref|ZP_05973588.1| nitrate/nitrite response regulator protein NarL [Providencia
           rustigianii DSM 4541]
 gi|282566031|gb|EFB71566.1| nitrate/nitrite response regulator protein NarL [Providencia
           rustigianii DSM 4541]
          Length = 206

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++ G  + EI+ +L IS  TV  +I ++++K   ++R  A    +R+ 
Sbjct: 148 LTRRECEILHEMAAGLKNREISQLLFISEETVKVHIRNVLKKLRVRSRLEASLIYMRSK 206


>gi|255015802|ref|ZP_05287928.1| transcriptional regulator [Bacteroides sp. 2_1_7]
          Length = 203

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 3/138 (2%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            P + TL          + +  +L + V+   +              D +     L    
Sbjct: 61  LPGYFTLQHLRKESGCAEMKCIALLYSVSDSVLLRSYDEQINIYDSPDEIKHK--LERLN 118

Query: 170 ANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           A +    +     + + L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK 
Sbjct: 119 AEVLPDDEPEGDDEQQSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKL 178

Query: 229 ATKTRSGAIAYAVRNNIV 246
              + SG   YA+ N +V
Sbjct: 179 QIHSASGLTIYAIVNKLV 196


>gi|84496282|ref|ZP_00995136.1| putative two-component system response transcriptional regulator
           [Janibacter sp. HTCC2649]
 gi|84383050|gb|EAP98931.1| putative two-component system response transcriptional regulator
           [Janibacter sp. HTCC2649]
          Length = 218

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G  L+    R+   + L + G++A  +    +  D    +   L+ +E   L  I++G T
Sbjct: 111 GADLVTSIRRVASGENLLDAGVVARLRTGWGR--DAEDPRLAPLSPQERRILEHIAQGLT 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + +I   + ++  TV NY+ S++ K   ++R+ A  Y     
Sbjct: 169 NRQIGQAMSLAEKTVKNYVTSVLAKMGLESRTQAAVYVASQG 210


>gi|300788195|ref|YP_003768486.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797709|gb|ADJ48084.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 59/175 (33%), Gaps = 9/175 (5%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYC 131
           V    P  ++  + +   D    + +       P  +    F      I         + 
Sbjct: 43  VVRHRPRVVLMDLRMPGVDGLTAIARIAALPDPPAVVALTTFDADTYVIRALRAGAAGFL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +     +   + +      ++       +  L++   +  +  +    +   LT RE 
Sbjct: 103 VKSTPPEDLIGLVRVAADGHTVLSPSAARRLVALSS---DSRERGEDARRRTAGLTERER 159

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  +  G ++ +IA  L ++  TV +Y++ ++ K     R+ A   A    +V
Sbjct: 160 DVLACLGSGLSNADIAARLHLAEATVKSYVSRMLVKLDCANRTQAGLLAHEAGLV 214


>gi|291454177|ref|ZP_06593567.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357126|gb|EFE84028.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 214

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            ++       L E +            L    A   +  +     G  ++   +    + 
Sbjct: 75  ADVLVLTTFDLDEYVFGALRAGAAGFLLKNTDAPGLLAAVRTVAAGEGLIAPAVTRRLIA 134

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A       +       +   LT RE E L  + EG ++  IA  L ++  T   +++ ++
Sbjct: 135 AFATGRAPRPAGAEPPELAALTRREREVLGCLGEGLSNARIAERLEMAEATAKTHVSRVL 194

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K   ++R+ A   A    I
Sbjct: 195 GKLGLRSRAQAALLAQELGI 214


>gi|226227636|ref|YP_002761742.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090827|dbj|BAH39272.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 223

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G T+  IA  LGISR TV  +  S+MRK    + +G   +A+   I
Sbjct: 160 LTPRERDVLAGVARGLTNKAIAAELGISRRTVEAHRESLMRKLQIHSVAGLTRFALETGI 219

Query: 246 V 246
           +
Sbjct: 220 I 220


>gi|254820486|ref|ZP_05225487.1| NarL_1 [Mycobacterium intracellulare ATCC 13950]
          Length = 217

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  +
Sbjct: 156 LSAREREVLNRIARGQSIPTIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGL 215

Query: 246 V 246
           +
Sbjct: 216 L 216


>gi|222152374|ref|YP_002561549.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113185|emb|CAR40638.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 226

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 67/175 (38%), Gaps = 8/175 (4%)

Query: 78  VSSDWPFDLVRCMALSEKDKYY--NVLQRPTELFCPVFHTLPENITPPAGM----DNRYC 131
           +  + P  ++  + + + D       +++       +  T  ++            + Y 
Sbjct: 43  LEKELPDVILMDIRMPKMDGVVCTKEVKKRYPTIKIIILTTFDDDEFIFSALKYGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGRE 190
                +  +   +  +F  G +I  D +      A  +     +    +  + E L+  E
Sbjct: 103 LKGVSMEELHQAIQTVFNGGAMINPD-IAIKVFKAFSELPTLNNTIKVFEDEVESLSKAE 161

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + +  +  G ++ EIA  L +S  TV NY+++++ K   + R+    ++V+  +
Sbjct: 162 WKIIQQVGFGLSNREIAQKLFLSEGTVRNYLSNVLAKLQLRDRTQLAIWSVQTGV 216


>gi|329944915|ref|ZP_08292942.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529726|gb|EGF56622.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 244

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G T+ EI     +S  TV  +++ ++ KT  + R   +  A+R  +
Sbjct: 175 LTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTGCRDRVQLVLLALRGGV 234

Query: 246 V 246
           V
Sbjct: 235 V 235


>gi|296268184|ref|YP_003650816.1| LuxR family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296090971|gb|ADG86923.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM
           43833]
          Length = 775

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            G +   +A          G+   LT RE E    +S G ++ EIA  L IS  T   ++
Sbjct: 688 AGFVLELEAPEEPVPAASNGQVPPLTRRETEIARLVSRGLSNKEIASTLVISPRTAEGHV 747

Query: 222 ASIMRKTATKTRSGAIAY 239
             I+ K    +R+    +
Sbjct: 748 EHILDKLGFSSRTQIATW 765


>gi|163740079|ref|ZP_02147482.1| response regulator [Phaeobacter gallaeciensis BS107]
 gi|161386628|gb|EDQ10994.1| response regulator [Phaeobacter gallaeciensis BS107]
          Length = 265

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 48/151 (31%), Gaps = 16/151 (10%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR         +     R  + F        +++        R+  L        +    
Sbjct: 115 VRLQGSDRFGGFNLGTARSRDSFIAHVTGKTDSL--------RFLCLIIHRRMEELRQTA 166

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
             P       D        A +   +         +   L+ RE E L   S+G TS E 
Sbjct: 167 SSPAANPYEPDAEG-----AGFDRPLIAPPPAALTR---LSPREREVLYLFSQGLTSKEC 218

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           A +  IS +TV+ Y  SI RK   + R  AI
Sbjct: 219 AAVCKISPHTVSEYANSIYRKLNVRNRVEAI 249


>gi|149187073|ref|ZP_01865379.1| two component system response regulator [Erythrobacter sp. SD-21]
 gi|148829284|gb|EDL47729.1| two component system response regulator [Erythrobacter sp. SD-21]
          Length = 231

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 10/153 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L   D   ++++R       V   L +  T    ++     +   +A+ R     +   
Sbjct: 61  GLEGPDGISDLMRRHPGTKLCV---LVDVATREVALEYLASGVMGCMAKSR-SAEEIVEA 116

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I   R +   L     A+  ++  +      +LT R+ + +  ++ GK++ EIA  L
Sbjct: 117 VDVIADGRPYLCKLTIEQSADAPRTPPIG-----KLTRRQRKVMAVMAMGKSNKEIAREL 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           GI   TV  ++ +  R      R  A+  A++N
Sbjct: 172 GICEGTVKVHVNAAYRALGVHNRVAAVR-ALQN 203


>gi|303242530|ref|ZP_07329009.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302589948|gb|EFL59717.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 214

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE++ +  + +GK++++IA  L ++  +V N ++S++RK   K R     +AVRN 
Sbjct: 153 KLNEREIKVIQLVVDGKSNNQIAEELFLTEGSVRNIVSSLLRKLDLKDRVQLAVFAVRNK 212

Query: 245 IV 246
           +V
Sbjct: 213 LV 214


>gi|254559044|ref|YP_003066139.1| LuxR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254266322|emb|CAX22086.1| putative transcriptional regulator, LuxR family [Methylobacterium
           extorquens DM4]
          Length = 486

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFK 174
           L        G +     +  D+   + G   LF     ++ D  W   GL+         
Sbjct: 349 LASAERVEIGEETFALLVLQDITERKRGERELFEAIEAVMADTSWFSRGLIEKLANLRQP 408

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 G    LT RE + L  I  G   D IA  L +SRNTV N+ A++ RK     R+
Sbjct: 409 GGHDGDGASPILTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRA 468

Query: 235 GAIAYAVRNN 244
            A+ +   N 
Sbjct: 469 EAVIWGRENG 478


>gi|329936870|ref|ZP_08286549.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329303795|gb|EGG47679.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 244

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + LT ++ G+ +  IA  L IS  TV  +IA ++ K     R  AIA+A  + +
Sbjct: 166 LSLRERQVLTLLASGRGTPAIATALRISPLTVKTHIAHLLSKLGVSRRGHAIAFAYEHGL 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|316932396|ref|YP_004107378.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315600110|gb|ADU42645.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 225

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +    F V ++   ++ +      +  D   ++   A  + +  +       +   L
Sbjct: 104 ASGFVPKRFGVEKLGEAILRVLDGDVWVPPD--VDLSAAADPETSKLR------DRLVTL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 156 TPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|262165533|ref|ZP_06033270.1| DNA-binding response regulator LuxR family [Vibrio mimicus VM223]
 gi|262171689|ref|ZP_06039367.1| DNA-binding response regulator LuxR family [Vibrio mimicus MB-451]
 gi|261892765|gb|EEY38751.1| DNA-binding response regulator LuxR family [Vibrio mimicus MB-451]
 gi|262025249|gb|EEY43917.1| DNA-binding response regulator LuxR family [Vibrio mimicus VM223]
          Length = 212

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA+
Sbjct: 147 KPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYAL 206

Query: 242 RNNIV 246
           ++ ++
Sbjct: 207 QHGLL 211


>gi|257790383|ref|YP_003180989.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257474280|gb|ACV54600.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 462

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWIS 198
             +++        RD   E       +     +              LT RE E L +++
Sbjct: 359 AFVMVLSSYMRRTRDAHDEQRAAEHAEDEATPASSPDRCAQLADAHNLTAREQEILAYLA 418

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EG +   I+ +L IS NTV  +I +I RK    +R
Sbjct: 419 EGHSGAYISDVLFISPNTVRTHIHNIYRKLDVSSR 453


>gi|213616370|ref|ZP_03372196.1| LuxR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 109

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S ++       L+ R+ E L  ++ G+++ +I   L IS  TV  ++ S+ R+   K 
Sbjct: 38  LNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDVKN 97

Query: 233 RSGAI 237
           R+ A 
Sbjct: 98  RTQAA 102


>gi|209695795|ref|YP_002263725.1| nitrate/nitrite response regulator protein NarP [Aliivibrio
           salmonicida LFI1238]
 gi|208009748|emb|CAQ80054.1| nitrate/nitrite response regulator protein NarP [Aliivibrio
           salmonicida LFI1238]
          Length = 203

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE+E L  +++G  + ++A  L IS  TV  ++ S+++K   K+R  A
Sbjct: 146 LTARELEILQNVAKGMRNKQVADKLFISEATVKVHMKSLLKKLNVKSRVAA 196


>gi|240137035|ref|YP_002961504.1| putative transcriptional regulator, LuxR family [Methylobacterium
           extorquens AM1]
 gi|240007001|gb|ACS38227.1| putative transcriptional regulator, LuxR family [Methylobacterium
           extorquens AM1]
          Length = 486

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFK 174
           L        G +     +  D+   + G   LF     ++ D  W   GL+         
Sbjct: 349 LASAERVEIGEETFALLVLQDITERKRGERELFEAIEAVMADTSWFSRGLIEKLANLRQP 408

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 G    LT RE + L  I  G   D IA  L +SRNTV N+ A++ RK     R+
Sbjct: 409 GGHDGDGASPILTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRA 468

Query: 235 GAIAYAVRNN 244
            A+ +   N 
Sbjct: 469 EAVIWGRENG 478


>gi|239926633|ref|ZP_04683586.1| two-component system, regulatory protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291434947|ref|ZP_06574337.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291337842|gb|EFE64798.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 257

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 34/223 (15%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP------------FD 85
                    + + AL+E +   H  L RWD  + +   + ++  +P             D
Sbjct: 24  ATSGATGIDLVLAALSEVMEYDHASLARWDPLRRRH--TTLAGSYPDDATAYIETRLHHD 81

Query: 86  LVRCMALSEKDKYYNVLQRPTELFC--PVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            V  +  S       +   P +L    P F      +  P G+++      F      +G
Sbjct: 82  PVFPVLRSPARGGLWLRDVPGQLLAASPGFQ----EVLCPLGIEDGVAQCLFAADGRYVG 137

Query: 144 LMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGR 189
           ++ +  +      D       L    L AA         +     D          L+ R
Sbjct: 138 MLNVSTRRPRRTPDPARAVLTLLTEALAAAVDTRAGPPPEEVAAADPTADARRPGGLSPR 197

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           E++ L  ++ G+T+ EIA  L I+  TV  ++  I+ K     
Sbjct: 198 ELQVLAELTAGRTNREIAERLYITPRTVGTHVEHILAKLDLPN 240


>gi|161724874|emb|CAO85748.1| PmrR protein [Pseudomonas sp. RW10S2]
          Length = 236

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 14/166 (8%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV------FHTLPENITPPAGMDNRYC 131
           + S++          +        ++       PV      F   P+          R+ 
Sbjct: 53  MLSNYSRPWCDHYHANGYLLLDPTVRHCQRSMQPVVWGDEIFADAPQLWDEARQAGLRHG 112

Query: 132 SLTFDVARIRIGLMLLF-------PKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKD 183
                +   + G ML          +G +   + R+  +  +A    +   S        
Sbjct: 113 WAQSCLEGSKGGGMLTLARSGEGIGEGELRAHETRMRWLANVAHQGFSRLLSDSWQPQPQ 172

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             L+ RE E L W ++GKT +E+A IL +S  TV  +  +   K  
Sbjct: 173 SPLSEREREVLRWAADGKTLNEVADILTLSIETVKFHTRNAGAKLG 218


>gi|218528441|ref|YP_002419257.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218520744|gb|ACK81329.1| transcriptional regulator, LuxR family [Methylobacterium
           chloromethanicum CM4]
          Length = 486

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFK 174
           L        G +     +  D+   + G   LF     ++ D  W   GL+         
Sbjct: 349 LASAERVEIGEETFALLVLQDITERKRGERELFEAIEAVMADTSWFSRGLIEKLANLRQP 408

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 G    LT RE + L  I  G   D IA  L +SRNTV N+ A++ RK     R+
Sbjct: 409 GGHDGDGASPILTVRERQILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRA 468

Query: 235 GAIAYAVRNN 244
            A+ +   N 
Sbjct: 469 EAVIWGRENG 478


>gi|49481089|ref|YP_035969.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228914414|ref|ZP_04078027.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|49332645|gb|AAT63291.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228845231|gb|EEM90269.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 212

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+         L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I        N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------CNLMESKEDECKIDSSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|114048791|ref|YP_739341.1| LuxR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890233|gb|ABI44284.1| transcriptional regulator, LuxR family [Shewanella sp. MR-7]
          Length = 221

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +
Sbjct: 156 LTNRERTIIQFVSNGARNKEIADRLFISEHTVKAHISSIFRKTQSRNRVELLRW 209


>gi|168698046|ref|ZP_02730323.1| response regulator receiver [Gemmata obscuriglobus UQM 2246]
          Length = 232

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R +    ++    LAA  A    +      +   L+ RE E L  ++ G  + EI   L 
Sbjct: 118 RAVAAGGVYLEPRLAAQLAEGPAAAPPDSAE--ALSQREHEVLRLLALGYANKEIGARLR 175

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IS  TV  Y    M K   ++R   + YA    
Sbjct: 176 ISVKTVETYKTRGMEKLNLRSRVELVRYAFERG 208


>gi|119776080|ref|YP_928820.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768580|gb|ABM01151.1| transcriptional regulator, LuxR family [Shewanella amazonensis
           SB2B]
          Length = 221

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LTGRE   +  +  G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A  +
Sbjct: 156 LTGRECTIIQLVGSGARNKEIADRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQSH 213


>gi|159045214|ref|YP_001534008.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157912974|gb|ABV94407.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
          Length = 228

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT ++   L  I  GK + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A
Sbjct: 158 LTKQQARILQLICAGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIA 212


>gi|89894764|ref|YP_518251.1| hypothetical protein DSY2018 [Desulfitobacterium hafniense Y51]
 gi|89334212|dbj|BAE83807.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 33/66 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              D H  K   LT REVE L  +  G  S EIA  L I++ TV+ +I +I+ K   K+R
Sbjct: 159 PQQDPHDDKMALLTSREVEILKLVVTGLRSKEIAENLRITKRTVDYHIGNILLKLEVKSR 218

Query: 234 SGAIAY 239
              +  
Sbjct: 219 MEIVLK 224


>gi|113970651|ref|YP_734444.1| LuxR family transcriptional regulator [Shewanella sp. MR-4]
 gi|114047880|ref|YP_738430.1| LuxR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113885335|gb|ABI39387.1| transcriptional regulator, LuxR family [Shewanella sp. MR-4]
 gi|113889322|gb|ABI43373.1| transcriptional regulator, LuxR family [Shewanella sp. MR-7]
          Length = 211

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 15/176 (8%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            D  ++ +   +V      DL +           +   R   +  P        +     
Sbjct: 41  CDQIKDNQASMVVIDLSTVDLQKAYQFQRLLAREHPSVRVVYIQFPKQVDARFLMQASTT 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         I +GL  +    R+I       I L+         + D    +D E
Sbjct: 101 AGVFYLDAGLT--EISLGLSNILRGHRVIP------IQLVNGV------NDDFGLFEDTE 146

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 147 PLTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|269128529|ref|YP_003301899.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268313487|gb|ACY99861.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 160

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE +    +S G T+ EIA  L ++ +TV  ++++++RK   + R+  IA A+   
Sbjct: 95  LTAREQDVARLMSSGLTNSEIARELQVAVSTVKFHVSNVLRKMGCRDRAQLIA-ALHRG 152


>gi|258624459|ref|ZP_05719406.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|258583306|gb|EEW08108.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
          Length = 216

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA+
Sbjct: 151 KPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYAL 210

Query: 242 RNNIV 246
           ++ ++
Sbjct: 211 QHGLL 215


>gi|307327922|ref|ZP_07607104.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886440|gb|EFN17444.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 226

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 5/168 (2%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRYCSLTFDV 137
           P  ++  + +   D      Q   E    V      ++            + +     + 
Sbjct: 58  PDVVLMDVQMPRLDGVSATRQVVAEQLADVLVLTTFDLDEYVFGALRAGASGFLLKDSEA 117

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +     +I       +    A                  LT RE E L  +
Sbjct: 118 ADLIEAVRTVGRGEGMIATAVTRRLIAEFARPQTAPSLNTPSPAALASLTPREREVLACL 177

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +G ++ +IA  L ++  TV  +++ ++ K   ++R  A   A    +
Sbjct: 178 GQGLSNAQIAARLSMAEATVKTHVSRLLSKLELRSRVQAAVLAQELGV 225


>gi|168492022|ref|ZP_02716165.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183573661|gb|EDT94189.1| response regulator [Streptococcus pneumoniae CDC0288-04]
          Length = 199

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I+ G ++ EIA  L +S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEVMMTHPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|319648166|ref|ZP_08002383.1| YfiK protein [Bacillus sp. BT1B_CT2]
 gi|317389801|gb|EFV70611.1| YfiK protein [Bacillus sp. BT1B_CT2]
          Length = 230

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 5/135 (3%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
                   F      +         Y     +  RIR  +  +F    ++    L +I  
Sbjct: 93  AKPFILTTFDDDEYIVAAIRNGAKGYLLKNAEPERIRDAIKSVFNGHIVMQDIILDKIKS 152

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             A         D         T RE+  +  I+ G ++ EI+  L IS  T+ NYI+SI
Sbjct: 153 NLAEHKEAEPKIDESL-----FTERELGIMALIARGLSNKEISKELFISEGTIANYISSI 207

Query: 225 MRKTATKTRSGAIAY 239
           + KT  + R+    Y
Sbjct: 208 LGKTGLEHRTQIAIY 222


>gi|317483987|ref|ZP_07942923.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924776|gb|EFV45926.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 218

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++EG ++ EIA  L ++  TV  +  + MRK   +       +A+   
Sbjct: 152 QLTQREREILKLVAEGCSNKEIAARLSVAEKTVVTHRTNFMRKLGLRNVREVTMFALECG 211

Query: 245 IV 246
           ++
Sbjct: 212 LI 213


>gi|302535539|ref|ZP_07287881.1| two component system response regulator [Streptomyces sp. C]
 gi|302444434|gb|EFL16250.1| two component system response regulator [Streptomyces sp. C]
          Length = 221

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 5/175 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLPENITPPAGMDNRY 130
            +  S  P  ++  + +   D    + +                   EN+          
Sbjct: 47  ELALSHAPDVVLLDIQMPVMDGLSALGELGRAAPAVRTLILTTFGEKENVLRALSQGGAG 106

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L        IG +     G   L        +            +    +  EL+ RE
Sbjct: 107 FLLKDSAPGELIGAVRAAAAGDAYLSPGATRHVVDQLATGPAAGRGEEARRRVAELSERE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
              L  + EG ++ +    L +S  TV  Y++ I+ K   + R  A   A    +
Sbjct: 167 RGVLALLGEGLSNADAGRRLHMSEATVKTYVSRILAKLGCENRVQAALLARDAGL 221


>gi|288870280|ref|ZP_06409695.1| DNA-binding response regulator VraR [Clostridium hathewayi DSM
           13479]
 gi|288867767|gb|EFD00066.1| DNA-binding response regulator VraR [Clostridium hathewayi DSM
           13479]
          Length = 183

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE+E L  + EG T +EIA  + IS  TV  ++ +I +K     +  A+  A  
Sbjct: 120 EVSLTDRELEILKLLDEGYTHEEIAGEIYISIATVRYHVKNIYQKLDVNNKILALRKAKD 179

Query: 243 NNIV 246
            N +
Sbjct: 180 LNFI 183


>gi|220933459|ref|YP_002512358.1| two component transcriptional regulator, LuxR family
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994769|gb|ACL71371.1| two component transcriptional regulator, LuxR family
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 218

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 8/120 (6%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +     MD     +T  + R+  G M L           L E  L    QA   +    
Sbjct: 93  GVQGYLSMDAPADRITQALDRVMQGEMWLTRH--------LMEYILKHDQQARAMRRNTG 144

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              K  ELT R++E    ++ G ++  I   L IS  TV  ++++I+ +TA ++R+    
Sbjct: 145 VHSKLMELTPRQLEVALMVANGLSNKAIGKRLMISERTVKAHVSAILERTAAQSRTELAV 204


>gi|167464818|ref|ZP_02329907.1| Regulatory protein related to malT, positive regulator of mal
           regulon (ATPase and HTH-type DNA-binding domain)
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 193

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQA 170
           + H L E +               ++  IR  L L        L  R       + ++  
Sbjct: 54  ILHVLREAVH-YGYEHEHLAPFYLEIETIRPYLSLFLVDPNQELNSREKRFAQRIQSFVV 112

Query: 171 NMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            + K   +      +    L+ RE+E L  ++ G+ + EI   L IS  TV +++ +I  
Sbjct: 113 EVKKGRSLPLASAEQETAILSKRELEVLQVLAAGRRNKEIGKELCISLATVKSHVINIYS 172

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K     R  A+       ++
Sbjct: 173 KLQVSNRVEAVERGRELRLL 192


>gi|94967299|ref|YP_589347.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549349|gb|ABF39273.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 217

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKY--YNVLQRPTELFCPVFHTLPENITPPAGM---DNRY 130
            IV    P  LV  +A+   D +     L R       V  T  E+      +     R 
Sbjct: 44  EIVQKVHPDVLVLDLAMPAGDGFDVLRTLDRAGTRVASVVLTGSESQQDYVQVVRLGARG 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L  D        +     G +   D +    L A          ++       L+ RE
Sbjct: 104 LVLKGDDPSKLFAAIRAVADGELAFSDEVARGVLNAMAAEPQPAPTNLAR-----LSERE 158

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +    ++ G  + +IA  L IS NTV  ++ SI  KT  + R      A+
Sbjct: 159 RQISFLVARGYKNKDIANELTISENTVKRHLQSIFSKTGARDRLELAVLAL 209


>gi|315181638|gb|ADT88551.1| response regulator [Vibrio furnissii NCTC 11218]
          Length = 204

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L++ +      +   A   +           LT RE + L  +++G  + +IA  L IS
Sbjct: 110 LLKEAVHGNKAYSDVVAAYLRDRQDQQDVFDLLTDREAQILGEVAKGYRNKQIADRLFIS 169

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ S+++K    +R+ A  
Sbjct: 170 ESTVKVHMKSLLKKLRVPSRTAATV 194


>gi|312129464|ref|YP_003996804.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311906010|gb|ADQ16451.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 212

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 79/218 (36%), Gaps = 17/218 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL----VR 88
           +  ++ +D    +   +  L   +    + +       +Q LD +  +  P D+    V 
Sbjct: 1   MKTILIVDDHTMFINGLKLLLSSL--PGYEVAGVASNGQQALDQLAET--PVDILLMDVN 56

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGLML 146
              L+     + V +R  E+   +   L + ++    ++                     
Sbjct: 57  MPVLNGYQTTFLVRERFPEVKIIILSMLADELSVSKLLEAGAHGYLFKNADEDELFEAFD 116

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              +G + +   + +  L A  +   FK  D       +L+ REV+    I EG T+ EI
Sbjct: 117 TVTQGHVYITKEIRDKVLPA--KMAQFKMDDS-----IKLSSREVDIARLIMEGLTNIEI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  L +S  TV  +  +I+ K   K  +  + Y + N 
Sbjct: 170 ADKLFLSVRTVETHRKNILAKLNLKNTASLVKYLMENK 207


>gi|326201441|ref|ZP_08191312.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
 gi|325988041|gb|EGD48866.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
          Length = 210

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 70/171 (40%), Gaps = 9/171 (5%)

Query: 80  SDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           S+ P  ++  + + E D +     +    +E+   +  T  + ++    +          
Sbjct: 45  SNTPDMIIMDLKMPELDGFEATRLIKHMYSEIKIVILSTFNDEVSVTKAVKYGADGFI-- 102

Query: 137 VARIRIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                +GL+ L    R I +  R++E  +L+    +   +      K  +++ RE+  + 
Sbjct: 103 --TKDMGLLELHHSIRSIHIGLRVFEDSVLSNIV-SKIDTVSAEPEKAIDISPREISIIK 159

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I++GK+  EI   L ++  TV N +  ++ +   K R     YA +  ++
Sbjct: 160 LIADGKSYKEIGETLYLAEGTVRNIVYKLLSQLDLKDRIQLAVYAAKRKLI 210


>gi|253575444|ref|ZP_04852781.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845091|gb|EES73102.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 201

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT RE E L     G+++ EIA  L ++  TV NY++  ++K   +TR  A   A 
Sbjct: 137 EDNPLTERETEVLRLSHAGRSTREIAETLFLTEGTVRNYLSLAIQKLGVETRQQATERAK 196

Query: 242 RNNIV 246
               +
Sbjct: 197 ERGWI 201


>gi|225857575|ref|YP_002739086.1| response regulator [Streptococcus pneumoniae P1031]
 gi|225725289|gb|ACO21141.1| response regulator [Streptococcus pneumoniae P1031]
          Length = 199

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I+ G ++ EIA  L +S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|222081090|ref|YP_002540453.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter
           K84]
 gi|221725769|gb|ACM28858.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter
           K84]
          Length = 500

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 76/242 (31%), Gaps = 29/242 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFL------LVRWD--LFQEQKLDSIVSSDWP 83
           +L     LD        +    E    S  L      + R D  +F E     +  S + 
Sbjct: 245 MLFTFADLDARRKAQNALRQSEERFSKSFRLSPAAAAISRLDDFVFTEVNDAFVQLSGYS 304

Query: 84  FDLVRCMALSEKDKYYNVL-QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + +     SE   + N+  +R  E        + +        D           R+ I
Sbjct: 305 LEEIVGKTASELRLWDNITARRAVEKKLADTIAVRDEAMLMKQKDGGTADCLVSAERVEI 364

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--------------------SYDVHWGK 182
           G           + +R      L     ++                      S      +
Sbjct: 365 GDQQCVIWSLQDITERKRSEAELVEAIESVMADTSWFSRSVVDRLATLRQVSSGKAPSAQ 424

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ RE E L  I  G++  E++  L +S+NT+ N++AS+  K     R+ A+ +A  
Sbjct: 425 LLDLSDREKEILALICRGQSDAEMSETLHLSKNTIRNHVASLYIKIGVNRRAAAVIWARE 484

Query: 243 NN 244
             
Sbjct: 485 RG 486


>gi|212691634|ref|ZP_03299762.1| hypothetical protein BACDOR_01129 [Bacteroides dorei DSM 17855]
 gi|212665823|gb|EEB26395.1| hypothetical protein BACDOR_01129 [Bacteroides dorei DSM 17855]
          Length = 256

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           IG M + P  +   +    E  +L      MF    V       LTGRE+E L  I  G 
Sbjct: 154 IGNMSMAPGQKESEQ---VECTVLNLRNGEMFSPGVVIMNPVVSLTGREMEILRLIQRGF 210

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S EIA  L IS  TV+ +  +++RK        AI     + ++
Sbjct: 211 LSKEIADKLCISIYTVHIHRQNLLRKLGVHNSLEAIRLGQESGLL 255


>gi|167567132|ref|ZP_02360048.1| probable two-component response regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
          Length = 216

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  ISEG  + +IA  L I+  TV  +  ++MRK      +    +A R 
Sbjct: 154 VALTPRERQVLKLISEGCRNRDIAEKLTITIKTVETHRLNLMRKLDAHNAAELANWAHRL 213

Query: 244 NI 245
            +
Sbjct: 214 GL 215


>gi|78484550|ref|YP_390475.1| LuxR family transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78362836|gb|ABB40801.1| transcriptional regulator, LuxR family [Thiomicrospira crunogena
           XCL-2]
          Length = 205

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE+E + WI +GK++ EIA  + IS  TV  ++ S++ K   K R   +  
Sbjct: 143 LSAREIETMEWILQGKSNHEIAEQMAISERTVKAHVHSLLEKLDAKDRLNLVIK 196


>gi|311694746|gb|ADP97619.1| HTH-type transcriptional regulator MalT [marine bacterium HP15]
          Length = 930

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  I  G  + EIA  + ++  TV  +I ++  K     R+ A+A A    
Sbjct: 867 PLSQRELEVLALIHAGHANKEIAAKMDVAPATVKAHIRNLYGKLGVGRRTEALARARELG 926

Query: 245 IV 246
           ++
Sbjct: 927 LL 928


>gi|307545406|ref|YP_003897885.1| LuxR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217430|emb|CBV42700.1| two component transcriptional regulator, LuxR family [Halomonas
           elongata DSM 2581]
          Length = 227

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 1/126 (0%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +         Y   +     +   L  +      +  D L       A  +    + D+ 
Sbjct: 92  LEAIRLGAVGYIPKSTPRDDLIAALQQVLEGQMYLPADILRRPPTPVAS-SRCEPAADLE 150

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT ++++ L  ++ G ++ +IA  L I+  TV  ++++I+ K    +R  AI  
Sbjct: 151 SSALAQLTAKQLQVLERMTCGDSNKQIARELNIAETTVKTHVSAILNKLGVNSRIQAILA 210

Query: 240 AVRNNI 245
           A  +++
Sbjct: 211 AREHDL 216


>gi|294672981|ref|YP_003573597.1| LuxR family transcriptional regulator [Prevotella ruminicola 23]
 gi|294473471|gb|ADE82860.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23]
          Length = 320

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 16/224 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R +L   +   D      ++      Y   +H  + R   ++++ L   V      +   
Sbjct: 100 RRELSESLDENDSLGRLILKF-----YDEYAHE-IRRHMQYEQKTLFPYVQQLIDGEPAN 153

Query: 89  CMALSEKDKYYNVLQR-PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              +    K++    +   EL   +   LP++       +N+  +   D+    + L   
Sbjct: 154 DYNVETFSKHHGAADKKLRELKLLIIKYLPQDGLH----NNQLTATLHDIYENEVWLRQH 209

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGKT 202
                 I    +  +  +   Q        + +G         L+ RE + +  + +G +
Sbjct: 210 AMVEDHIFVPAIRRLEQITKQQDVTRNISGMVFGNATAQNPDALSDREKDVIISLVQGMS 269

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS NTV  +  +I RK    + +G   YA+ N +V
Sbjct: 270 NKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVNGLV 313


>gi|224369897|ref|YP_002604061.1| two-component response regulator protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223692614|gb|ACN15897.1| two-component response regulator protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 218

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  +   T  +  +   ++++      +  + L  +      +             
Sbjct: 98  IQAGAKGFLLKTSSLEDLHTAILMVASGKSYLCPEALNIMM-----EDIQTPGDTKLLCP 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE   +  I+EG TS EI+  L IS+ TV+ +  + M K    T +G   +AV+
Sbjct: 153 LQRLTLRERGVIQLIAEGYTSQEISEKLNISKRTVDVHRTNTMNKLKIHTIAGLTRFAVK 212

Query: 243 NNIV 246
             ++
Sbjct: 213 EGLI 216


>gi|254507039|ref|ZP_05119177.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219550034|gb|EED27021.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 212

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 18/209 (8%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
                 ++M    E +G +   L   +  ++ K D +V  D    ++  +  +   +  N
Sbjct: 18  DGFMARLQMEPEIEVIGTASNGLEAVERVKQLKPD-VVLMDVSMPIMNGIEATNMIREEN 76

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
              +   +     H   E I     +    Y        ++   +  +            
Sbjct: 77  PQAK---ILMLTMHDNREYIMKVMQVGAVGYMLKEISADKMVQAIKTVNQGSTYF----- 128

Query: 160 WEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
                          S DV     K   L+ RE   L  +++G +S ++A +L IS  TV
Sbjct: 129 ------CESVTQTLFSQDVVPASQKPNPLSRREEAVLKLVAQGHSSKKVAAMLNISYRTV 182

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  +I  K    + +    YAV   +V
Sbjct: 183 ETHRQNIKHKLDLHSTAELAKYAVERGLV 211


>gi|152985807|ref|YP_001348245.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960965|gb|ABR82990.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 213

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 21/216 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +P+   L AR+I  D    +   +  +         +       +  +L S VS + P  
Sbjct: 1   MPSTRSLPARVIVADDYPLFRDGLRRVVRRYLPQAAVSEAGSFDEVLRLASSVSPEPPAL 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-------NRYCSLTFDVA 138
            V  + L         ++R    +      +   +  P  +D       + Y   + +  
Sbjct: 61  FVLDLLLPG-FAASQSIERLRRAYRHSAIVIVSMLDDPRLVDEVLAAGADGYLGKSLEAG 119

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   L  L     ++   RL       + Q            +   LT R+   L  I+
Sbjct: 120 EIGTALQTLGSGEPVV---RLRGGSSAGSRQ----------RARLDALTPRQQAVLRLIA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +G ++ EI   L IS  TV  +++S++R     TR+
Sbjct: 167 DGLSNKEIGRALSISPFTVRVHVSSLLRALEVNTRT 202


>gi|52787684|ref|YP_093513.1| YfiK [Bacillus licheniformis ATCC 14580]
 gi|52350186|gb|AAU42820.1| YfiK [Bacillus licheniformis ATCC 14580]
          Length = 230

 Score = 78.1 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 9/155 (5%)

Query: 89  CMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            + +   D                    F      +         Y     +  RIR  +
Sbjct: 73  DVRMPNMDGVEAARLISETGAKPFILTTFDDDEYIVAAIRNGAKGYLLKNAEPERIRDAI 132

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +F    ++    L +I    A         D         T RE+  +  I+ G ++ 
Sbjct: 133 KSVFNGHIVMQDIILDKIKSNLAEHKEAEPKIDESL-----FTERELGIMALIARGLSNK 187

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI+SI+ KT  + R+    Y
Sbjct: 188 EISKELFISEGTIANYISSILGKTGLEHRTQIAIY 222


>gi|332883601|gb|EGK03882.1| hypothetical protein HMPREF9456_01423 [Dysgonomonas mossii DSM
           22836]
          Length = 292

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL--LAAYQANMFKSYDVHWGKDF 184
           +N   ++ F +   +  L         +L+  + E+    +   Q            K  
Sbjct: 164 ENMCYAVIFTIDSFQKDLEKHNRIREKVLKPMIDELSESGIEDLQELFVSGRISRDNKRQ 223

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE++ L  I+ G  + E+A  L IS NTV ++  +I  K   KT SG I Y + + 
Sbjct: 224 PLSERELDVLRLIALGLLNKEVADKLNISLNTVLSHRKNITAKLGIKTVSGLIFYCITHG 283

Query: 245 IV 246
            +
Sbjct: 284 YI 285


>gi|269793732|ref|YP_003313187.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269095917|gb|ACZ20353.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 204

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 138 ARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             + +G+    PK    +++ D +  +     Y      +  +  G D  LT RE + L 
Sbjct: 95  RALAVGVRGFLPKTASALVVADVVRSVHAGGRYVDPELAAEAIASG-DSPLTAREADVLA 153

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++G   DEIA  + +S  TV NY+++ + K     R  A A A R+  +
Sbjct: 154 LAADGSPVDEIAQRVSLSAGTVRNYLSTAVMKLGVSNRHEAAATARRHGWI 204


>gi|300024629|ref|YP_003757240.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526450|gb|ADJ24919.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 225

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 15/183 (8%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQ-RPTELFCP--VFHTLPENIT 121
            D         ++ S  PFD+V   +AL     +  +L+ R      P  V   L +   
Sbjct: 34  HDAVSIDAAKKVLESKTPFDIVLLDLALPGTRGFEGLLELRKLHPSLPIVVVSALEDPRI 93

Query: 122 PP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYD 177
                      + S + D + I   L  +      + +  +  E    A  + ++     
Sbjct: 94  VQDVMRYGAAGFISKSADRSEIASALKDVMEGSLTLPKGYKPPEAPTNAEARGDLVHRLK 153

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +       LT +++  L  + +G  + +IA  L I   TV  +++ I+RK    +R+ A+
Sbjct: 154 M-------LTPKQLSVLRMLRQGLLNKQIAHELQIEETTVKAHVSEILRKLNVSSRTQAV 206

Query: 238 AYA 240
             A
Sbjct: 207 IEA 209


>gi|312131027|ref|YP_003998367.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311907573|gb|ADQ18014.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 210

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE E L  I+   ++ EIA  L +S  TV  +  S+ +K   K  +G +  A+ 
Sbjct: 146 EVKLTKRETEILALIANEYSNQEIADKLFLSIRTVEAHRNSLNQKLDIKNTAGLVKEALL 205

Query: 243 NNIV 246
             ++
Sbjct: 206 RGLI 209


>gi|222106795|ref|YP_002547586.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221737974|gb|ACM38870.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 894

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 10/177 (5%)

Query: 63  LVRWDLFQEQKLDSIVSSDW---PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
           LVR DL + ++  SI+ S       DL R + L+  D    + +   E+         E+
Sbjct: 710 LVRGDLERARQALSILISQQLTKIHDL-RSVELALLDMRLLIAEEKREIVAARL----ED 764

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYD 177
           +     M++    +  +       L  +  +     +LR RL  +           +   
Sbjct: 765 LLLTFPMEDFRAMIWIEGDDFLGDLRAIAEESPMSAVLRQRLQALLPEGKVAPETSEDMP 824

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +H      LT RE+  +  +S+G ++ EI   L +S NT+  ++ +I  K    TR+
Sbjct: 825 LHGLSSSALTDRELAVMALLSQGFSNKEIGRKLALSDNTIKFHLRNIFAKLKVTTRT 881


>gi|89096863|ref|ZP_01169754.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89088243|gb|EAR67353.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 201

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 52/177 (29%), Gaps = 23/177 (12%)

Query: 76  SIVSSDWPFDLVRCMALSEK------DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
            +V    P  L+  + +         +           +    F          A     
Sbjct: 41  ELVKKHQPDVLIVDIEMPLMTGLEVAEALKEAGSSCKVIILTTFARPGYFQRAIAAGVGG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +   +  +    R+I      E+ L               W +   LT R
Sbjct: 101 YLLKDTPSRDLAEAVRRVHAGNRMISP----ELSL-------------AMWEEKSPLTPR 143

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L   + G T  +IA  L +S  TV NY++ I+ K     R  A+  A     +
Sbjct: 144 ETEILESAAAGHTMAQIASQLYLSHGTVRNYMSEIIGKLGAANRIEAVNQAKAKGWI 200


>gi|332715487|ref|YP_004442953.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062172|gb|ADY65862.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 492

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L+ I +G +  E++  L +S++T+ N+IAS+  K     R+ A+ +A    
Sbjct: 426 DLTEREEQILSLICDGCSDKEMSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIWARERG 485


>gi|292491684|ref|YP_003527123.1| LuxR family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580279|gb|ADE14736.1| regulatory protein LuxR [Nitrosococcus halophilus Nc4]
          Length = 229

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 45/110 (40%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +            P  + +L  RLW       Y     K  +    +   LT RE 
Sbjct: 112 PEAVEAIHGGAADFFTKPWQKSVLLKRLWACMEKDQYARENKKKQEEIIARMARLTPREW 171

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           E +  + +G+ +  IA  LGIS  TV N+ A +M+K   KT++  I  A+
Sbjct: 172 EVMELVVKGRLNKVIAFELGISLKTVENHRAQVMKKLQVKTQADLIRLAL 221


>gi|224536197|ref|ZP_03676736.1| hypothetical protein BACCELL_01063 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522181|gb|EEF91286.1| hypothetical protein BACCELL_01063 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 255

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE+E L  I +G  S EIA  L IS +TVN +  +++ K   +    AI   +
Sbjct: 190 PRIHLTQRELEILQLIQKGLLSKEIAHNLCISIHTVNIHRQNLLHKLGVQNSIEAINAGL 249

Query: 242 RNNIV 246
           ++ I+
Sbjct: 250 KSGIL 254


>gi|251795068|ref|YP_003009799.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542694|gb|ACS99712.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 218

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 77/194 (39%), Gaps = 18/194 (9%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLV----RCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           + V   L   + LD++  +  PFD++        +S  +    ++Q+  +    ++    
Sbjct: 27  MKVTVVLSAMEALDAV--NHDPFDIILCDLNMPGISGLELTKRLIQQDPDRRVLIYTGYE 84

Query: 118 ----ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                N+    G+   + S T    ++   +        +I       I LL   + N  
Sbjct: 85  ISTHYNLLIECGVS-GFISKTVSREQLHNNIRCAMRGEAVIP------ITLLKQLRRNEV 137

Query: 174 KSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           K        ++  +  R+ + L  ++ G ++ +IA  L +S+ TV   +  I  K + ++
Sbjct: 138 KITRAEKAIEEVSINERDQDILQEVASGSSNKDIAAKLHMSQRTVEYNLTRIFEKLSVRS 197

Query: 233 RSGAIAYAVRNNIV 246
           RS AI  A R  ++
Sbjct: 198 RSEAIVEAKRLGLI 211


>gi|227502153|ref|ZP_03932202.1| regulatory family protein [Corynebacterium accolens ATCC 49725]
 gi|306836811|ref|ZP_07469769.1| LuxR family bacterial regulatory protein [Corynebacterium accolens
           ATCC 49726]
 gi|227077137|gb|EEI15100.1| regulatory family protein [Corynebacterium accolens ATCC 49725]
 gi|304567272|gb|EFM42879.1| LuxR family bacterial regulatory protein [Corynebacterium accolens
           ATCC 49726]
          Length = 279

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ--- 103
            R   +++Y  A+        + Q++ L SIV+   P  + R +        ++ ++   
Sbjct: 72  RRAVGVSDYTRATTISHENDSVIQDEGLHSIVAV--PVTVQREIRGVLYVGVHSPVRLGD 129

Query: 104 ----------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                     R  E    V   +        G    +     +  ++R     L      
Sbjct: 130 KVIEEVTMTARTLEQDLAVNSAMRRADGGKGGASRGHAMNGAEWEQVRSTHSKLRMLANR 189

Query: 154 ILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +  + L  E+  L     +      V   +  +L+ RE++ L+ ++ G T+ E A  +GI
Sbjct: 190 VEDEELRKELEALCDQMVS-----PVRVKQSTKLSARELDVLSCVALGHTNVEAAEEMGI 244

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
              TV +Y+ S+MRK    TR  A+  A R  
Sbjct: 245 GAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276


>gi|237728835|ref|ZP_04559316.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909457|gb|EEH95375.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 201

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ +I  +L IS  TV  ++ S+ ++   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKQIGRLLNISTGTVKAHLESLYQRLEVKNRTQAA 193


>gi|158339380|ref|YP_001520557.1| LuxR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309621|gb|ABW31238.1| transcriptional regulator, LuxR family, putative [Acaryochloris
           marina MBIC11017]
          Length = 149

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTS 203
             G    +  L   G +  + +        H   D       LT RE +    +++G T+
Sbjct: 47  GHGPAFNQFDLSRFGAVCTHFSTRLAELRKHSVADSNPYWQSLTPRERQIANLVAQGLTN 106

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EI   L ISRNTV   +  + RK    +R   +   +R+ +
Sbjct: 107 PEIGAALWISRNTVKQALKRMFRKLEVSSRMEMVLK-LRDGL 147


>gi|307330665|ref|ZP_07609804.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883726|gb|EFN14773.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 219

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 12/175 (6%)

Query: 81  DWPFDLV------RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYC 131
           D P DLV        +   E  +       P EL   V  T  ++    A +    N + 
Sbjct: 45  DHPVDLVLMDIRMPGIDGVEATRRIRKEHPPEELRVIVLTTFDQDDIVLAALRAGANGFL 104

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGRE 190
           S T   A +  G+  +   G  +         L+     +     D    + F+ LT RE
Sbjct: 105 SKTVSPAELVAGISEVVRGGGALSAA--ATAALIGHMTDSPPPVIDRELLRRFDALTPRE 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + +  ++ G  ++EIA  + +S  TV  +    M K   + R+  +++  R  +
Sbjct: 163 RDVVVLVASGLGNEEIAAQMSVSPFTVKTHAVRAMTKVGARDRAQLVSFTFRAGL 217


>gi|270294227|ref|ZP_06200429.1| transcriptional regulator [Bacteroides sp. D20]
 gi|270275694|gb|EFA21554.1| transcriptional regulator [Bacteroides sp. D20]
          Length = 254

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             D +L+ RE E L  I +G  S EIA  LG+S  TVNN+  +I+ K        AI
Sbjct: 188 SPDKQLSNREKEILRLIRQGFLSKEIAHQLGVSIYTVNNHRKNILSKLDANNIMEAI 244


>gi|117920952|ref|YP_870144.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117613284|gb|ABK48738.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3]
          Length = 211

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 15/176 (8%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            D  ++ +   +V      DL +           +   R   +  P        +     
Sbjct: 41  CDQIKDNQASMVVIDLSTVDLQKAYQFQRLLAREHPSVRVVYIQFPKQVDARFLMQASTT 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         I +GL  +    R+I       I L+         + D    +D E
Sbjct: 101 AGVFYLDAGLT--EISLGLSNILRGHRVIP------IQLVNGV------NDDFGLFEDTE 146

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 147 PLTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|322417997|ref|YP_004197220.1| LuxR family two component transcriptional regulator [Geobacter sp.
           M18]
 gi|320124384|gb|ADW11944.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M18]
          Length = 212

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E +  ++ G  + EIA  L IS  TV  ++ +I +K     R   + YA    +
Sbjct: 152 LTQREIELVRMVAGGSRNKEIADRLCISEGTVKVHLHNIYQKINVDGRVALLRYAQEKGL 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|229178244|ref|ZP_04305615.1| Response regulator [Bacillus cereus 172560W]
 gi|228605374|gb|EEK62824.1| Response regulator [Bacillus cereus 172560W]
          Length = 212

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++  G+ 
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVY-NGQT 123

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +++D +     L   ++N+ ++ +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 124 VMQDVI-----LDKIKSNLMENKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|209966948|ref|YP_002299863.1| transcriptional regulator, LuxR family protein [Rhodospirillum
           centenum SW]
 gi|209960414|gb|ACJ01051.1| transcriptional regulator, LuxR family protein [Rhodospirillum
           centenum SW]
          Length = 907

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEI------GLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +R   +    +   +LRD L          L  A+   + ++      +   L+ RE   
Sbjct: 794 LRQVFLEHGERLAPLLRDCLRRSREIGLDSLARAFAEELERTLARPRDEADTLSPRERAV 853

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  +  G ++ EIA  L ++ NTV  ++ +I  K     R+ AI  A R
Sbjct: 854 VIELCRGASNKEIARALAMTENTVKFHLKNIFGKLGVDRRAAAIITARR 902


>gi|27380999|ref|NP_772528.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27354165|dbj|BAC51153.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 217

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 173 FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            +S DV        L+ +++  L  I EGK + +IA  L I+  TV  ++++I+RK    
Sbjct: 138 IQSADVELAARMATLSAQQLRILAMIVEGKLNKQIAGELDIAEQTVKGHVSTILRKLGVG 197

Query: 232 TRSGAIAYAVR 242
           +R+ A   A R
Sbjct: 198 SRTQAAVLAER 208


>gi|228970024|ref|ZP_04130734.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228789688|gb|EEM37560.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 86

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   
Sbjct: 10  DEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGV 69

Query: 231 KTRSGAIAYAVRNNIV 246
           + +  A+  A+   I+
Sbjct: 70  RNKEEAVQKALEIGII 85


>gi|29345566|ref|NP_809069.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571711|ref|ZP_04849117.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|298384488|ref|ZP_06994048.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|29337458|gb|AAO75263.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838919|gb|EES67004.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|298262767|gb|EFI05631.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 220

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 150 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 209

Query: 243 NNIV 246
             IV
Sbjct: 210 AGIV 213


>gi|30261839|ref|NP_844216.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Ames]
 gi|47527080|ref|YP_018429.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49184673|ref|YP_027925.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Sterne]
 gi|65319116|ref|ZP_00392075.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|165869394|ref|ZP_02214053.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|170686283|ref|ZP_02877505.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|170707310|ref|ZP_02897765.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|177650481|ref|ZP_02933448.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190566515|ref|ZP_03019433.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815387|ref|YP_002815396.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228933122|ref|ZP_04095982.1| Response regulator [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229600997|ref|YP_002866221.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
 gi|254683338|ref|ZP_05147199.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254734693|ref|ZP_05192405.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254755345|ref|ZP_05207379.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Vollum]
 gi|254759882|ref|ZP_05211906.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Australia 94]
 gi|30256067|gb|AAP25702.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Ames]
 gi|47502228|gb|AAT30904.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178600|gb|AAT53976.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Sterne]
 gi|164714834|gb|EDR20352.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|170127809|gb|EDS96681.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|170669980|gb|EDT20721.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|172083625|gb|EDT68685.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190562650|gb|EDV16617.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003074|gb|ACP12817.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228826536|gb|EEM72310.1| Response regulator [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229265405|gb|ACQ47042.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
          Length = 212

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           VR   ++  +    + +  TE    +  T  ++      + N    Y     D  RIR  
Sbjct: 56  VRMPNMNGVEATKLICEE-TETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKT 202
           +  ++    ++    L +I        N+ +S +     D  L T RE+  +  I++G +
Sbjct: 115 IKGVYNGQTVMQDVVLDKIK------CNLMESKEDECKIDKSLFTERELSIIALIAKGFS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 169 NKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|307945008|ref|ZP_07660345.1| putative two component LuxR family transcriptional regulator
           [Roseibium sp. TrichSKD4]
 gi|307771932|gb|EFO31156.1| putative two component LuxR family transcriptional regulator
           [Roseibium sp. TrichSKD4]
          Length = 256

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 19/196 (9%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------------- 107
           FL+     F++  L + V    P  +V    +     +    +   +             
Sbjct: 55  FLVYSCPTFED--LLNKVPRVMPDVIVAAYDVMVGSGFQLPKETKLQYPDIKVISSRTPT 112

Query: 108 ---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              +   +F    + +         Y      V      +     +   + ++    +  
Sbjct: 113 DGAVARNLFSMNVDAVLGDNASSGEYSVAIRAVGFGGFYVSREISEAMALSKE-FPSLRT 171

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
              +Q  +       +  +F L+ RE+E L  +++G +S +IA I+ IS  TV  + A+I
Sbjct: 172 EVQHQEELVIEDQNVFDNEFGLSQRELEVLHLVAKGLSSKQIAPIVNISARTVEAHRANI 231

Query: 225 MRKTATKTRSGAIAYA 240
            RKT     S  +  A
Sbjct: 232 KRKTKAMGLSDLVEIA 247


>gi|228945442|ref|ZP_04107796.1| Response regulator [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228814245|gb|EEM60512.1| Response regulator [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 212

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           VR   ++  +    + +  TE    +  T  ++      + N    Y     D  RIR  
Sbjct: 56  VRMPNMNGVEATKLICEE-TETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKT 202
           +  ++    ++    L +I        N+ +S +     D  L T RE+  +  I++G +
Sbjct: 115 IKGVYNGQTVMQDVVLDKIK------CNLMESKEDECKIDKSLFTERELSIIALIAKGFS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 169 NKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|148252434|ref|YP_001237019.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146404607|gb|ABQ33113.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 8/116 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +    F V  +R  +  +      +  D            A           +   L
Sbjct: 103 ASGFIPKRFGVDTLRDAITKVMDGDVWVPPD--------TDLAAGADPEMTRLRDRLVTL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T ++V  L  +S+G  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 155 TPQQVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 210


>gi|146282625|ref|YP_001172778.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri
           A1501]
 gi|145570830|gb|ABP79936.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri
           A1501]
          Length = 219

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           R    +L    R +L  + +    LA   A    S     G+  ++T RE+E    ++ G
Sbjct: 104 RCAPDVLVEAVRKVLAGQTFIEQPLATDLACQRPSRSPVRGRLVDMTPREMEIFIMLARG 163

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + EIA  L IS  TV+N++A +  K    +++  +  A+   ++
Sbjct: 164 IGNREIAERLCISSKTVSNHLALLKSKLEVSSQAELVHLAIDQGLL 209


>gi|229059483|ref|ZP_04196866.1| Response regulator [Bacillus cereus AH603]
 gi|228719849|gb|EEL71441.1| Response regulator [Bacillus cereus AH603]
          Length = 212

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 87  VRCMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   ++  +    + +  +   L    F      +         Y     D  RIR  +
Sbjct: 56  VRMPNMNGVEATKLICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I       +N+ +S +     D  L T RE+  +  I++G ++
Sbjct: 116 KGVYNGQTVMQDVVLDKIK------SNLMESKEEESKIDKSLFTERELSIIALIAKGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 170 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|167566181|ref|ZP_02359097.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
          Length = 205

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 13/183 (7%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITPPA 124
                +   +   D P  ++  + L   D    + +      ++   VF  L        
Sbjct: 21  AIDMAEASDLCGRDRPDLVLMDVMLPGDDPLPAMGEILRTYPDMRFVVFTALGSEARAAD 80

Query: 125 GM---DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            +    + Y         I   +  +      I    L E  + +A       S      
Sbjct: 81  AIRFGASGYLLKWCSPDGIVQAVRRVMAGRVHIDPS-LDEARVASAAGGRTLASP----- 134

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +LT RE + L  I +G  + EIA +L IS+ TV+ +   +M+K   +  +  I +A 
Sbjct: 135 -VDKLTRREKQILKLIVDGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVIHWAY 193

Query: 242 RNN 244
           R  
Sbjct: 194 RYG 196


>gi|170743785|ref|YP_001772440.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168198059|gb|ACA20006.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 220

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 8/156 (5%)

Query: 91  ALSEKDKYYNVLQRPTE--LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            L+  +    + +R  +  L     H     + P      R   L    A   +  +   
Sbjct: 61  DLNGLELARRLAERCPQVKLLALTVHESRAYVQPMLQAGARGYLLKRSAADELLRAIRAV 120

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G + L   + +  L  A  A   +           L+ RE E L   ++G ++ EIA+
Sbjct: 121 AAGGLYLDPAVADKALPGAPAARSAEPGGAD------LSPRETEVLRHTAQGFSNKEIAL 174

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L +S  TV  Y A    K   +TR+  + +     
Sbjct: 175 RLDVSVKTVETYKARAAEKLHLRTRADIVRFGAARG 210


>gi|317473872|ref|ZP_07933152.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909949|gb|EFV31623.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 223

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIAV   +S +T+N++  +I RK        A  YA++  I
Sbjct: 156 LTPAERSILKEIALGKTTKEIAVERNLSFHTINSHRKNIFRKLGVNNAHEATKYAMKAGI 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|302530143|ref|ZP_07282485.1| response regulator [Streptomyces sp. AA4]
 gi|302439038|gb|EFL10854.1| response regulator [Streptomyces sp. AA4]
          Length = 204

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +  +L    G   L  RL +  LLA  Q       + +      L  RE + L  ++EG 
Sbjct: 101 VSAVLAAGDGTATLPPRL-QGALLAQVQRMRRDVLEPNGLTLSGLASRECDVLRLVAEGY 159

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EIA  L  S  TV N +  +M +     R+ A+AYA+R   +
Sbjct: 160 GTEEIATKLCYSERTVKNVLYGLMTRCGLNNRAHAVAYALRAGAI 204


>gi|298372989|ref|ZP_06982979.1| DNA-binding response regulator, LuxR family [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298275893|gb|EFI17444.1| DNA-binding response regulator, LuxR family [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 212

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E + + + G +  EIA  + IS  TV+ +  +I  K   KT    + +AV + I+
Sbjct: 151 TAREREVMLYAASGLSGKEIADKMNISLRTVDKHKNNIFTKFGFKTSMDMVNFAVHHGII 210


>gi|258593175|emb|CBE69506.1| conserved protein of unknown function; putative transcriptional
           regulator [NC10 bacterium 'Dutch sediment']
          Length = 300

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 27/166 (16%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
              WP  L   ++  +  +++ +  R                  P  +D    +L  +  
Sbjct: 128 LCQWPCPLKMTLSRGDLIQHFEMATRTR-------------TGKPLWIDVSCVALPCEDN 174

Query: 139 RIRIGLMLL-----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +    + L        +  +++R +L +  L A+         +       +LT RE++ 
Sbjct: 175 QPPTVVHLFRDVTAAHQLEVLVRQQLAQTQLTAS---------EKTVSPVGDLTRRELQV 225

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +T +  G T+  IA  L IS+ TV N+I +I  K    +R  A+AY
Sbjct: 226 VTLMRTGATTAAIAEQLFISKTTVRNHIQNIFSKLKVHSRLEAVAY 271


>gi|307150230|ref|YP_003885614.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
 gi|306980458|gb|ADN12339.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 237

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 90/235 (38%), Gaps = 30/235 (12%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +++L  +I    T S   +M +         F+  RW ++    L  +   D     V+ 
Sbjct: 3   TNVLHSLIASLATASNQQQMRSHFMDTAGELFIAQRWGIYLLDNLSQVAQVD-----VKG 57

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY--------CSLTFD----- 136
           +  S  D+Y  + ++   +   V                ++        C  +FD     
Sbjct: 58  LPDSFVDRYEKIGRQVDPVLKYVIERHAPAHEQLLLTQEQWKQSLLYQNCCSSFDHEHIM 117

Query: 137 ----VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN------MFKSYDVHWGKD--F 184
               V + ++   + F + R      + ++  L+A   +         S D     D   
Sbjct: 118 TGPIVGQGQLIGTVHFARIRETSAFNIDDLMFLSAICTHFSANLARINSPDPQLTSDWAK 177

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE++ ++ +++G T+ EI   L I++N+V   +  I RK   ++R+  +A 
Sbjct: 178 KLTSRELQIISLVAQGLTNTEIGQELWITQNSVKQALKRIFRKLDVRSRAQMVAK 232


>gi|301310989|ref|ZP_07216918.1| transcriptional regulator, LuxR family [Bacteroides sp. 20_3]
 gi|300831052|gb|EFK61693.1| transcriptional regulator, LuxR family [Bacteroides sp. 20_3]
          Length = 203

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 3/138 (2%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            P + TL          + +  +L + V+   +              D +     L    
Sbjct: 61  LPGYFTLQHLKEESGCAEMKCIALLYSVSDSVLLRSYDEQINIYDSADEIKHK--LERLN 118

Query: 170 ANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           A +    +     + + L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK 
Sbjct: 119 AEVLPDDEPEGDDEQQSLSSREKEIVVCVVKGMTNREIADRLFLSTHTVITHRRNIARKL 178

Query: 229 ATKTRSGAIAYAVRNNIV 246
              + SG   YA+ N +V
Sbjct: 179 QIHSASGLTIYAIVNKLV 196


>gi|197285412|ref|YP_002151284.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320]
 gi|194682899|emb|CAR43257.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320]
          Length = 207

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE++ L  ++ G  + +IA  L IS  TV  +I +I++K    +R  A    +++
Sbjct: 148 LTKRELDVLQEVAVGMKNKQIAENLFISEETVKVHIRNILKKLQVTSRLAASLILIKH 205


>gi|306820840|ref|ZP_07454463.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551112|gb|EFM39080.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 221

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IS G  +  I+  L IS  TV N+++SI++K   + R+    YA++N I+
Sbjct: 166 VMKEISSGLNNKSISKKLNISEKTVKNHVSSILKKLELQDRTQVAIYAIKNKII 219


>gi|258653745|ref|YP_003202901.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258556970|gb|ACV79912.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 293

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E   ++W++ G T+  IA  L +SR+TV+ ++  +  K    +R      A+++ 
Sbjct: 231 LTDAERRVVSWVAGGMTNRRIAEELHLSRHTVDAHLKHVYVKLDIHSRVELTVLAMQHR 289


>gi|302539397|ref|ZP_07291739.1| two component transcriptional regulator [Streptomyces sp. C]
 gi|302448292|gb|EFL20108.1| two component transcriptional regulator [Streptomyces sp. C]
          Length = 220

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +T RE + L  ++ G T+ EIA  L IS +TV  ++AS+M K   + R     +A    
Sbjct: 155 PVTAREEQVLLAVARGLTNTEIADALRISLSTVKTHLASLMAKLGARNRVEIAMWAYETR 214

Query: 245 IV 246
            +
Sbjct: 215 RI 216


>gi|163803797|ref|ZP_02197650.1| regulatory protein CsgD [Vibrio sp. AND4]
 gi|159172395|gb|EDP57268.1| regulatory protein CsgD [Vibrio sp. AND4]
          Length = 213

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 7/154 (4%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +D +R +   E+   +++   P  +     H +   +     +       +  V  I   
Sbjct: 55  YDFMRRLESREELPDFDLFAWPLMIHNVPSHNVENKLLRWKLLKGILLQ-SASVDHISES 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +F  G  + R  L    L+  Y+ +       H      LT RE + L  ++ G ++
Sbjct: 114 VEYIFQGGLWLPRGYLE--ALINNYRHSNISMDSQHDS----LTSRERQILELLAYGISN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +IA  L +S +TV ++I  + +K     R+ AI
Sbjct: 168 QQIASQLFLSESTVKSHIYKLYKKLDVHCRNDAI 201


>gi|126667193|ref|ZP_01738167.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter sp. ELB17]
 gi|126628349|gb|EAZ98972.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter sp. ELB17]
          Length = 221

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 166 AAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           AA +     S    + +    LT ++   L  ++EG  + +IA  L +S  T+  +I ++
Sbjct: 131 AADKIERMHSDATDFSEKLASLTPQQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAV 190

Query: 225 MRKTATKTRSGAIAYAVRN 243
            RK   + R+ A+  A++ 
Sbjct: 191 FRKLGVRNRTQAVI-AIQQ 208


>gi|56476561|ref|YP_158150.1| putative regulatory protein, LuxR [Aromatoleum aromaticum EbN1]
 gi|56312604|emb|CAI07249.1| putative regulatory protein, LuxR [Aromatoleum aromaticum EbN1]
          Length = 895

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 35/66 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +L+ RE+E L  +S G+++ EIA +L +   T+  ++ +++ K     R  A+  A
Sbjct: 829 NRPAQLSAREMEILGALSLGRSNKEIAKMLDVGAETIKWHMKNLLAKLNAANRRHAVDRA 888

Query: 241 VRNNIV 246
               I+
Sbjct: 889 RLLGII 894


>gi|323525472|ref|YP_004227625.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323382474|gb|ADX54565.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 292

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 15/188 (7%)

Query: 63  LVRWDLFQE-QKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCP-------- 111
           L R++  Q+ ++++  +   WP  LV      +S KD  + +   P              
Sbjct: 26  LARFNEGQDWRQVERTLKRQWPDLLVIDWQDWMSVKDVRHLLSHYPDLRIAVLTDKISPK 85

Query: 112 -VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
            V   + E +      +   C +      + +G   + P G + L   L     +  +  
Sbjct: 86  VVGELMDEGVRGVVARETDPCLIVRAFEMVLLGGHYV-PSGALPLNPPLPADTAIRPFDE 144

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                          L+ R+ + +  +  G T+  IA  LGIS  TV  ++ SI ++   
Sbjct: 145 KNPPPRRARLSN--GLSPRQEQIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGA 202

Query: 231 KTRSGAIA 238
             R+ A+A
Sbjct: 203 PNRAAAVA 210


>gi|269954998|ref|YP_003324787.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303679|gb|ACZ29229.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 219

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 1/167 (0%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V +  P  +V  + L + D    V +            L       A  D         V
Sbjct: 48  VPALAPDVVVLDVRLPDGDG-VAVCRELRATTDVACLMLTSFDDDEALFDAIIAGAAGYV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +   G  L+     +     + +        A M             LT +E   L+ I
Sbjct: 107 LKQVRGTDLVHAIRTVAAGGSMLDPHAAERVMARMRAQARHDDDPLASLTPQEQRILSLI 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +G T+ +I   L ++  TV NY+++++ K   + R      A +  
Sbjct: 167 GQGMTNRQIGAELFLAEKTVKNYVSNLLAKLGMERRVQVAVLATKLG 213


>gi|237722378|ref|ZP_04552859.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|260171068|ref|ZP_05757480.1| transcriptional regulator [Bacteroides sp. D2]
 gi|299146395|ref|ZP_07039463.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|315919388|ref|ZP_07915628.1| transcriptional regulator [Bacteroides sp. D2]
 gi|229448188|gb|EEO53979.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|298516886|gb|EFI40767.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|313693263|gb|EFS30098.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 219

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 149 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 208

Query: 243 NNIV 246
             IV
Sbjct: 209 AGIV 212


>gi|92115904|ref|YP_575633.1| two component LuxR family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91798798|gb|ABE61173.1| two component transcriptional regulator, LuxR family [Nitrobacter
           hamburgensis X14]
          Length = 231

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +      V  +R  ++ +      I  D    + L AA    M +  D    +   L
Sbjct: 110 ASGFIPKRLGVDALRTAILKVIEGDIWIPPD----VDLSAAADPEMTRLRD----RLVTL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K    +R+ A+  A R
Sbjct: 162 TPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVIAAAR 217


>gi|91782650|ref|YP_557856.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91686604|gb|ABE29804.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 292

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 22/228 (9%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +LN   E+R    + L  + D LAR             +      +     L++ W  + 
Sbjct: 5   ILNSNAERRDGLKA-LLRQIDRLARFNEAQDWRQVERPLKRQRPDL-----LVIDWQDWM 58

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
                  + S +P      + ++      + +     +   V   +P +  P        
Sbjct: 59  SIADTRHLLSHYP-----DLRIAVLTDQISPVSVRELMDEGVLGVVPRDTDP-------- 105

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
           C +      + +G   + P    +      +I   A    +              L+ R+
Sbjct: 106 CLIVRAFEMVLLGGHYVPPGALALDPPLPPDI---AIRPFDEKSPPPRRTKLANGLSPRQ 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + +  +  G T+  IA  LGIS  TV  ++ SI ++     R+ A+A
Sbjct: 163 QQIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAVA 210


>gi|298487656|ref|ZP_07005697.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157748|gb|EFH98827.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 220

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 1/139 (0%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +     HT P+ I     +  R   L    A      +         L   +    +  A
Sbjct: 79  VLILSMHTDPDMIMRALDIGARGYLLKDTTATELEQALEALRNNERYLSPAIAHTVIERA 138

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +            + + LT R++E L  I  GK++ EIAV LG+S  T+  + + +M++
Sbjct: 139 LRGTRSDRAQATKER-YHLTARQLEILRLIVRGKSTREIAVGLGLSIKTIETHRSQVMKR 197

Query: 228 TATKTRSGAIAYAVRNNIV 246
                 +G + + VR  I+
Sbjct: 198 LQIFDVAGLVLFCVRERII 216


>gi|84684209|ref|ZP_01012111.1| two component transcriptional regulator, LuxR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667962|gb|EAQ14430.1| two component transcriptional regulator, LuxR [Rhodobacterales
           bacterium HTCC2654]
          Length = 177

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 19/161 (11%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPP----AGMDNRYCSLTFDVARIRIGLML 146
           ++SE +              PV   LP   +P       ++     LT D+    +G +L
Sbjct: 30  SVSEANLRSAFSTISRSRGKPVAIVLPHKASPSTVWRCIVNGAGAVLTDDMPSTAMGHLL 89

Query: 147 LFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                       L   GL +     ++     V   K   L+ RE++ L  + +G  + E
Sbjct: 90  -----------SLMHTGLRIPTLNEDVLPDPSVVAQK---LSDRELQVLAGVCKGLQNKE 135

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA    I   TV  ++ +++RK   K R+ A   A    +V
Sbjct: 136 IAHDFNIKEVTVKMHVRAVIRKLDAKNRTHAAMIARDLGLV 176


>gi|326772882|ref|ZP_08232166.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326637514|gb|EGE38416.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 253

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 13/140 (9%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--ANMFKSYD 177
           +         Y         +  GL  +     ++    L E+      Q  A    +YD
Sbjct: 113 VRVIEAGAVGYLLKYSASEELHAGLRRVMAGESVLSPGALAELLRYVRSQPTAPTAAAYD 172

Query: 178 VHWGKDF-----------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +   +              L+ RE+E +   +EG T++EIA  L IS +TV  ++ S   
Sbjct: 173 LRSQERQHAVAQAQQAAAGLSRRELEVIAAAAEGLTTEEIANRLYISVSTVKAHLRSAQE 232

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +   + R      A R  ++
Sbjct: 233 RVGARNRVHLAVLAERAGLL 252


>gi|284039670|ref|YP_003389600.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283818963|gb|ADB40801.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 214

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + K F LT RE+E +  I  G ++ +IA  L +S  T+  +  +I  K    + +  I +
Sbjct: 149 FVKQFSLTPREIEIIRLIRNGLSTSQIAERLFLSAETIKTHRKNIYFKLGINSVAALILF 208

Query: 240 AVRNNI 245
           A    I
Sbjct: 209 ANEQGI 214


>gi|323358600|ref|YP_004224996.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323274971|dbj|BAJ75116.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 224

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 8/167 (4%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDN 128
           +S+++   P  ++  + +   D      +          +    F    + +        
Sbjct: 45  ESVIARHQPDVVLMDIRMPRCDGLTATAREVAADPSRAIIVLTTFDADEDVVRALRAGAR 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +       A +   +        ++    L ++  LAA    +  + +        LT 
Sbjct: 105 GFLLKDAPPAELVAAVRAAASGRSVLAPGVLDQVIRLAADHTRLPTAAE--REALASLTP 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           RE E    ++ G ++ +I+  L +S  TV  ++  ++ K   ++R+ 
Sbjct: 163 REREVAAAVARGASNADISAELFLSLPTVKTHVGRVLTKLGVESRTQ 209


>gi|295394930|ref|ZP_06805143.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972263|gb|EFG48125.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 225

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 9/164 (5%)

Query: 89  CMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRI 142
            + +   D    + +   R  EL   +  T  ++      ++           +  ++  
Sbjct: 64  DIQMPRLDGIGALREIRHRQPELPIAMLTTFSDDHLIADAINAGALGFLLKSDEPQQLIA 123

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G+  L   G             LA  Q    ++          LT R++E LT I+ G +
Sbjct: 124 GVRALAHGGGAFSP---RVARWLATEQQAGHRTRTARDELTALLTERQIELLTHIARGLS 180

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   + +S  TV  Y++ +        R  A   A R+ ++
Sbjct: 181 NAQIGRAMHLSEGTVKQYVSQLFNTLGIDNRVHAAITAYRHGLI 224


>gi|126739386|ref|ZP_01755079.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
 gi|126719486|gb|EBA16195.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
          Length = 203

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  + +G ++ EIA  L +   T+  ++ ++ RK   K R+ A   A    
Sbjct: 142 KLSPRELEVLESLCKGLSNKEIARELDLQEVTIKLHVRTLCRKLDAKNRTQAALTAKEAG 201

Query: 245 I 245
           +
Sbjct: 202 L 202


>gi|269126467|ref|YP_003299837.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311425|gb|ACY97799.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 232

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 8/130 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170
           VF  L          D     L   V  +  G  +L P   R ++R+        AA   
Sbjct: 88  VFGALRAGAAGFLLKDIDADRLIEAVRTVAAGEGILAPAVTRRLIRE-------FAARPG 140

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                         ELT RE + L  + EG ++ +IA  L ++  T   +++ I+ K   
Sbjct: 141 RPAAPLASPPPGPAELTPRERQVLGCLGEGLSNAQIAARLNMAETTAKTHVSRILAKLGL 200

Query: 231 KTRSGAIAYA 240
           ++R  A   A
Sbjct: 201 RSRVQAAILA 210


>gi|299066090|emb|CBJ37271.1| putative two-component response regulator, transcription regulator,
           LuxR [Ralstonia solanacearum CMR15]
          Length = 238

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 75/224 (33%), Gaps = 25/224 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS----IVSSDWPFDLVRCM 90
           R++  +        + ++   +G        +D+  E K       +  S  P  ++  +
Sbjct: 6   RLLIAEDHHLLRCGLRSMLSALG-------EYDVVGEAKDGREACQLAISLAPDLVLTDL 58

Query: 91  ALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGL 144
           ++   +       + +R  ++   V             +    + Y         +   L
Sbjct: 59  SMPGMNGIDMVATIKRRLPQIRVVVLTVYKAEEYVREALRVGVDGYVLKDASFDELVAAL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT 202
             +    R +  D      +      +    ++    K     LT RE   L  ++EG+T
Sbjct: 119 RAVMQGKRHLSAD------VYGNVVKSFVNGHEALAPKSTWETLTARERSVLQLVAEGRT 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++ + L +S  T+  Y A +M K      +G +  A+   ++
Sbjct: 173 NRQVGLYLNLSPKTIEKYRAHLMEKLGVGNVTGLVLAAIGLGLI 216


>gi|298483763|ref|ZP_07001936.1| transcriptional regulator [Bacteroides sp. D22]
 gi|295087553|emb|CBK69076.1| transcriptional regulator [Bacteroides xylanisolvens XB1A]
 gi|298270057|gb|EFI11645.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 233

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 163 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 222

Query: 243 NNIV 246
             IV
Sbjct: 223 AGIV 226


>gi|294646863|ref|ZP_06724484.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294808898|ref|ZP_06767627.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|292637808|gb|EFF56205.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294443940|gb|EFG12678.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 233

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 163 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 222

Query: 243 NNIV 246
             IV
Sbjct: 223 AGIV 226


>gi|254693110|ref|ZP_05154938.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|261213346|ref|ZP_05927627.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260914953|gb|EEX81814.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 213

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+    R  
Sbjct: 149 LTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIG 207


>gi|284028795|ref|YP_003378726.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808088|gb|ADB29927.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 200

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE++ L   SEG +  +IA  L ++  TV NY+++ MRKT  K+R  A  YA  
Sbjct: 137 DNPLTDRELDALRLTSEGYSVADIATRLFLAEGTVRNYLSNAMRKTQAKSRHEAARYARE 196

Query: 243 N 243
           +
Sbjct: 197 H 197


>gi|227486353|ref|ZP_03916669.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227235764|gb|EEI85779.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 196

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  +  GKT+ +IA  L IS  T+ ++I +I  K   + +      A+ 
Sbjct: 130 ENPLTKREEEVLKALITGKTNTQIAKDLYISERTLYHHIENIYEKLKVENKVELYGKALE 189

Query: 243 NNIV 246
              V
Sbjct: 190 LGYV 193


>gi|149189578|ref|ZP_01867861.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Vibrio shilonii AK1]
 gi|148836557|gb|EDL53511.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Vibrio shilonii AK1]
          Length = 226

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 11/127 (8%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                   D     L   +    +G  ++ P+   IL   L E       +     S DV
Sbjct: 108 GADGYLLKDMEPEELLASIENACLGKTVISPELTSILVGNLREKKQ----EKLTNVSIDV 163

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+ RE E L  I+ G ++  IA  L IS +TV  ++ SI++K   ++R  A  
Sbjct: 164 -------LSTREQEILKNIAIGLSNKMIANKLFISESTVKVHVKSILKKLQLRSRVEAAV 216

Query: 239 YAVRNNI 245
           +  +  I
Sbjct: 217 WVHQEKI 223


>gi|298250665|ref|ZP_06974469.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297548669|gb|EFH82536.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1075

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 4/121 (3%)

Query: 129  RYCSLTFDVARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             Y     D+    + L+ +    + +     +   ++  +   Q    K  +     +  
Sbjct: 956  GYSRTFIDMGEALLPLLKILRNLKPLANYSPNYTRQLLAMLDKQDMAEKPAENSASTEL- 1014

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+  E   L  ++EG T  EIA  L  + NTV  +   I  K    +R+ AIA +    +
Sbjct: 1015 LSEHEFVILRCLAEGYTDREIARRLVRAENTVKTHTKHIYDKLNVHSRTQAIARSRELGL 1074

Query: 246  V 246
            +
Sbjct: 1075 L 1075


>gi|283835899|ref|ZP_06355640.1| putative HTH-type transcriptional regulator YhjB [Citrobacter
           youngae ATCC 29220]
 gi|291068070|gb|EFE06179.1| putative HTH-type transcriptional regulator YhjB [Citrobacter
           youngae ATCC 29220]
          Length = 200

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E LT ++ G+++ +I  +L IS  TV  ++ S+ ++   K R+ A 
Sbjct: 142 LSARQREILTMLAAGESNKQIGRLLNISTGTVKAHLESLYQRLEVKNRTQAA 193


>gi|253574622|ref|ZP_04851962.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845668|gb|EES73676.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 247

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            T RE+E ++ I++G ++ EIA  + IS  TV NYI SI+ KT  + R+    Y
Sbjct: 187 FTERELEVMSRIAKGLSNKEIAKEIFISEGTVANYITSILNKTGLEHRTQIAIY 240


>gi|229023298|ref|ZP_04179807.1| Response regulator [Bacillus cereus AH1272]
 gi|228738003|gb|EEL88490.1| Response regulator [Bacillus cereus AH1272]
          Length = 212

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            +   L    F      +         Y     D  RIR  +  ++    ++    L +I
Sbjct: 74  TKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTVMQDVVLDKI 133

Query: 163 GLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
                  +N+ +S +     D  L T RE+  +  I++G ++ EI+  L IS  T+ NYI
Sbjct: 134 K------SNLMESKEEESKIDKSLFTERELSIIALIAKGFSNKEISKQLFISEGTIANYI 187

Query: 222 ASIMRKTATKTRSGAIAY 239
            S++ KT  + R+    Y
Sbjct: 188 TSVLGKTGLEHRTQIAIY 205


>gi|254476578|ref|ZP_05089964.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
 gi|214030821|gb|EEB71656.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
          Length = 244

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT ++   L  I  GK + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A
Sbjct: 177 LTNQQARILQLICAGKLNKQIAFDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIA 231


>gi|114561746|ref|YP_749259.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333039|gb|ABI70421.1| transcriptional regulator, LuxR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 222

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 157 LTSRERTIIQLVSSGARNKEIAQRLCISEHTVKAHISSIFRKTESRNRVELLRWA 211


>gi|312139261|ref|YP_004006597.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311888600|emb|CBH47912.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 291

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWG-KDFELTGREVEC 193
           D   IR     L    + +    L E +  L+   A +  + D         L+ REV+ 
Sbjct: 178 DAEEIRDVHAELRSIAQTVDDPALQEQLRALSNRLAGVGAADDTDRPTPPVALSPREVDV 237

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L+  + G ++  IA  L +   TV +Y+ S M K    +R  A+  A R  ++
Sbjct: 238 LSHAALGCSNVVIAERLSVKPETVKSYLRSAMSKLDAHSRREAVVAARRLGLL 290


>gi|170728214|ref|YP_001762240.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813561|gb|ACA88145.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 221

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 156 LTKRERTIIQLVSSGARNREIADNLCISEHTVKAHISSIFRKTHSRNRVELLRWA 210


>gi|170728075|ref|YP_001762101.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169813422|gb|ACA88006.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 206

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 13/173 (7%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +  IV  D     +  M  +E  K      +   +     H   E +        R  +
Sbjct: 45  LMPDIVLMDISMPEMNGMDAAEIFKDKFPEIK---ILILSMHDDKEYVLSVLNRGVRGYA 101

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L        I    +F   R+I    ++    ++       +  D    K+  LT RE  
Sbjct: 102 LK------DISAAEMFYALRVIHNGGIYYSRAISDLLVQSSQEPD----KNTVLTTREQT 151

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  ++ G  + E+A  L IS  T+  +  +I  K A KT +G + YA+ + +
Sbjct: 152 VLRLLASGLNNKELARELDISVRTIETHRRNIKDKLAIKTSAGLVRYAIDHGL 204


>gi|326333357|ref|ZP_08199604.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325949001|gb|EGD41094.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 253

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L++    A    N+ +   +H     ELT ++   L  ++EG ++ EIA  L ++  TV 
Sbjct: 124 LFDPEAAAKVVHNVEERRRMHEVV-AELTPQQRRILVLLAEGISNREIADRLVLAEKTVK 182

Query: 219 NYIASIMRKTATKTRSGAIAYA 240
           N+I  ++ K     R+ A   A
Sbjct: 183 NHITGLLAKLGVSHRTQAALMA 204


>gi|293369467|ref|ZP_06616050.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|292635465|gb|EFF53974.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
          Length = 219

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 149 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 208

Query: 243 NNIV 246
             IV
Sbjct: 209 AGIV 212


>gi|218289394|ref|ZP_03493628.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240500|gb|EED07681.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 200

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +++G+     K   + +       ++A ++    +        D  L+ RE++ L   
Sbjct: 92  RALQVGVHGYLLKDGKVEQLAAHLRSIMAGHRVFDPELMVAAMETDSPLSAREIDVLRLA 151

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             G T+ ++A  L +S  TV NY++  + K    TR  AI  A    
Sbjct: 152 KRGLTTRQMAKELFLSEGTVRNYLSGALAKLGCATRQEAIRKADEMG 198


>gi|146284530|ref|YP_001165483.1| two component LuxR family transcriptional regulator [Enterobacter
           sp. 638]
 gi|145320663|gb|ABP62809.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 202

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 36/74 (48%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  Y      +  V   +   LT R+ E L  + +GK++ +IA  L IS  TV  +++ +
Sbjct: 123 VVNYIPGTLPNLRVTPAELDLLTERQREVLQLLVQGKSNKQIAQSLNISPFTVRIHVSQV 182

Query: 225 MRKTATKTRSGAIA 238
           +      TR+ AIA
Sbjct: 183 LHVLGVPTRTVAIA 196


>gi|319940251|ref|ZP_08014603.1| response regulator protein [Streptococcus anginosus 1_2_62CV]
 gi|319810553|gb|EFW06889.1| response regulator protein [Streptococcus anginosus 1_2_62CV]
          Length = 227

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 49/119 (41%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         +   +  +   G +I  +   ++  + +  A    +  V      ++
Sbjct: 98  ASGYILKGVSTEELHQAIQTVHKGGAMINPNIASKVFKIFSQMAQSNFAISVAEENVEDM 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  E + +  I  G ++ EIA  L +S  T+ NY++ I+ K   + R+    +AV+  +
Sbjct: 158 SQTEWKIIQQIGFGVSNKEIAAKLFLSEGTIRNYLSGILSKLNLRDRTQLAIWAVQTGV 216


>gi|297537662|ref|YP_003673431.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257009|gb|ADI28854.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 219

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 64/177 (36%), Gaps = 10/177 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPT-----ELFCPVFHTLPENITPPAGM-DNR 129
            +  S  P  ++  +++   +   ++L+        ++     H   E +        + 
Sbjct: 44  RLAGSLSPNLMLMDLSMPGTNGTESILEIKRRYPKIKVLVLTVHKAEEYVREALKAGADG 103

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      +A + + +  +      +  D + E  +          +    W     +T R
Sbjct: 104 YVLKHATLAELMVAIKSVLRGKTYLSPD-VAEQVVSGYLFGGKGPNQTSTWD---SITLR 159

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+EG  +  IA  L +S  T+  + +++M+K      +    +A+   ++
Sbjct: 160 EREVLKLIAEGHPNKFIANYLCVSVKTIEKHRSNLMKKLDMHNAASLAVFAIEKGLI 216


>gi|270262435|ref|ZP_06190706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043119|gb|EFA16212.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 206

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRI--ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            Y ++   V  ++ G      K      L   + E   LAA  ++  + +     +   L
Sbjct: 82  GYGTIPLSVQAMKAGAHEFLTKPVASDDLLKAVQEALNLAAENSDQLREHYELKQRHLTL 141

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L    +G  + +IA  LG+S  TV  +   +M K   ++ +  + +A R N+
Sbjct: 142 TPREQEVLELTIKGLMNKQIAAELGVSEITVKVHRRRVMDKMQVRSLADLVRHAERLNL 200


>gi|228996711|ref|ZP_04156348.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           mycoides Rock3-17]
 gi|228763030|gb|EEM11940.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           mycoides Rock3-17]
          Length = 55

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G T+ EI   L IS +TV  +I +I  K     R  AI  A+ + ++
Sbjct: 2   LIVLATGATNKEIGKKLFISISTVKTHIINIYTKLQVSNRVEAIKKALEHGLI 54


>gi|205374169|ref|ZP_03226968.1| hypothetical protein Bcoam_13554 [Bacillus coahuilensis m4-4]
          Length = 199

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +   LT RE+E L  +++GK ++EIA  L I   TV NYI++I+ K   K R  AI
Sbjct: 134 EQNPLTEREIEVLGLVADGKNTNEIANELSIKAGTVRNYISAILDKLEVKNRIEAI 189


>gi|152964247|ref|YP_001360031.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151358764|gb|ABS01767.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 228

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + I         Y +       +   +  +     +         G +
Sbjct: 91  RFLALSVSDAADDVIAVIRRGARGYVTKAISGDDLAAAVRRVAEGDAVFSP---RLAGFV 147

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                           +   L+ RE E +  I+ G    E+A  L IS  TV  ++++++
Sbjct: 148 LDAFGAGAGEVAAADDELDRLSAREREVMRLIARGYAYKEVAKELFISVKTVETHVSAVL 207

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R+    +A    ++
Sbjct: 208 RKLQLSNRNELTRWAAARRLL 228


>gi|86608522|ref|YP_477284.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557064|gb|ABD02021.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 229

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 3/169 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V SD     +       + +     +    +F      + + +       + Y    F
Sbjct: 47  DVVVSDVVMPEMDGFEFCRQLRQQRGGELVPFIFLSSRGEIDDRVQGYERGADDYIIKPF 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +     + R    + L    L+        ++       +  LT  E     
Sbjct: 107 EPLELVAKIEAQIERSRRTQSEILR---LIQQQSQPKPEADPRPTPPELPLTPAEERVFR 163

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +  G T+ +I   L IS  TV  ++ +I+ K + + RS  + +A    
Sbjct: 164 EVIRGFTNKQIGEKLFISPRTVQTHLTNILSKLSLENRSQLVRFAYERG 212


>gi|86142564|ref|ZP_01061003.1| hypothetical protein MED217_06611 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830596|gb|EAQ49054.1| hypothetical protein MED217_06611 [Leeuwenhoekiella blandensis
           MED217]
          Length = 243

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 40/81 (49%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A Y         V    +   + R+ E +  I+EG  S EIA +L ISR+TV+ +  +I+
Sbjct: 163 ANYLDQAAFKRYVGHQYENFFSARQFEVIKGITEGLNSKEIADLLFISRHTVDTHRKNIL 222

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K   K     I++  +N ++
Sbjct: 223 KKARCKNSVELISFCKKNGLI 243


>gi|318058563|ref|ZP_07977286.1| LuxR family two-component response regulator [Streptomyces sp.
           SA3_actG]
          Length = 235

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 6/132 (4%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +                L   V  +  G  LL P+    +  R+ E       +   
Sbjct: 101 FDAIMAGAAGYVLKQINGSDLLNAVRTVATGTSLLDPRMTSRVMARIREP------EREK 154

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                   G+   L+ RE+E L  I  G T+ +IA  L ++  TV N ++SI+ K     
Sbjct: 155 PAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEKTVKNRVSSILGKLGVGR 214

Query: 233 RSGAIAYAVRNN 244
           R  A   A R  
Sbjct: 215 RIQAAMIAERLR 226


>gi|15597572|ref|NP_251066.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|254235381|ref|ZP_04928704.1| hypothetical protein PACG_01285 [Pseudomonas aeruginosa C3719]
 gi|254240810|ref|ZP_04934132.1| hypothetical protein PA2G_01481 [Pseudomonas aeruginosa 2192]
 gi|296389212|ref|ZP_06878687.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|9948416|gb|AAG05764.1|AE004664_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126167312|gb|EAZ52823.1| hypothetical protein PACG_01285 [Pseudomonas aeruginosa C3719]
 gi|126194188|gb|EAZ58251.1| hypothetical protein PA2G_01481 [Pseudomonas aeruginosa 2192]
          Length = 213

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +P+   L AR+I  D    +   +  +         +       +  +L S VS + P  
Sbjct: 1   MPSTRSLPARVIVADDYPLFRDGLRRVVRRYLPQAAVSEAGSFDEVLRLASSVSPEPPAL 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-------NRYCSLTFDVA 138
            V  + L         ++R    +      +   +  P  +D       + Y   + +  
Sbjct: 61  FVLDLLLPG-FAASQSIERLRRAYRHSAIVIVSMLDDPRLVDEVLAAGADGYLGKSLEAG 119

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   L  L     ++   RL       + Q  +  +          LT R+   L  I+
Sbjct: 120 EIGTALQTLGSGEPVV---RLRGGSSAGSRQRALLDA----------LTPRQQAVLRLIA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +G ++ EI   L IS  TV  +++S++R     TR+
Sbjct: 167 DGLSNKEIGRALSISPFTVRVHVSSLLRALEVNTRT 202


>gi|323959451|gb|EGB55108.1| luxR family protein regulatory protein [Escherichia coli H489]
          Length = 200

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+  + E LT ++ G+++ EI   L IS  TV  ++ S+ R+   K R+ A 
Sbjct: 142 LSAHQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAA 193


>gi|300704444|ref|YP_003746047.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957]
 gi|299072108|emb|CBJ43440.1| putative transcription regulator protein [Ralstonia solanacearum
           CFBP2957]
          Length = 222

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 6/181 (3%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGM 126
            E   D+I +      LV  + L   D+   + +   RP      V             M
Sbjct: 35  DEAMFDAIEAHSDAGLLVIGLPLPHLDELSAIGEIMHRPHARHVVVLAESESPDIIRTLM 94

Query: 127 DNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   L L+   G+ I    L     L +              K 
Sbjct: 95  QMGLSGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDSTPNPSLAGDPQTDPKL 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A + 
Sbjct: 155 LGITPRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQR 214

Query: 244 N 244
            
Sbjct: 215 G 215


>gi|229096320|ref|ZP_04227293.1| Response regulator [Bacillus cereus Rock3-29]
 gi|228687280|gb|EEL41185.1| Response regulator [Bacillus cereus Rock3-29]
          Length = 212

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 87  VRCMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   ++  +    + +  +   L    F      +         Y     D  RIR  +
Sbjct: 56  VRMPNMNGVEATKLICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I       +N+ +S +     D  L T RE+  +  I++G ++
Sbjct: 116 KGVYNGQTVMQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 170 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|284028619|ref|YP_003378550.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283807912|gb|ADB29751.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 218

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 7/176 (3%)

Query: 77  IVSSDWPFDLVRCMALSEKDKY-----YNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           +V    P  ++  + +   D          L  P ++       L + +           
Sbjct: 42  MVREHRPDVVLMDIRMPRLDGLAATREIQALPEPPKVVVLTTFDLDDYVFRALQAGASGF 101

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGRE 190
            L     R  +  + +   G  +L   +    L+  + A+          +    LT RE
Sbjct: 102 LLKDTPPRELVQAVRVVAAGDAMLSPAVTRR-LIGHFAADQRTDRQRLAKQRLSRLTDRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VE L  +  G ++ +I   L +S  TV  +++ ++ K     R      A    ++
Sbjct: 161 VEVLVAVGRGLSNADIGRSLFMSEATVKAHVSRVLVKLDATNRVQVAILAHEAGLL 216


>gi|218532600|ref|YP_002423416.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218524903|gb|ACK85488.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
          Length = 216

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 21/182 (11%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +V      +L+  +    K     V  R      P +      +   AG       +   
Sbjct: 30  VVDVSNSSELINSLRSPLKTDLVIVGSRLLPAGDPTYLGA---LKRAAGTARLLLVVPHA 86

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEI----------GLLAAYQANMFKSYDVHWG----- 181
            A +    + L   G I+ R R  E+           L A       K  D   G     
Sbjct: 87  SADLFQDALSLGFHGLIVRRQRHEEMLEAVRTTLDGRLYAPTTILAVKPPDARAGLRQPE 146

Query: 182 ---KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              + F LT R+ E L  I +G ++ EIA+ L I+  TV  ++++++R    + R+ A  
Sbjct: 147 RSVRTFGLTLRQREVLALIGKGLSNREIAIALSIAEATVKIHVSAVIRMLGVRNRTEAAL 206

Query: 239 YA 240
            A
Sbjct: 207 LA 208


>gi|13473840|ref|NP_105408.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
 gi|14024591|dbj|BAB51194.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 220

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 35/67 (52%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +S +    +  +LT R+ E L  ++EG ++ E+A+ L +   TV +++  ++ K   
Sbjct: 140 QSPQSANGAADRLRQLTERQTEILRLVAEGLSNKEVALRLELQEKTVKHHMTGVLSKLNV 199

Query: 231 KTRSGAI 237
           + R+ A 
Sbjct: 200 RNRTEAA 206


>gi|326622251|gb|EGE28596.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 270

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    +     ++    AG       N + S  
Sbjct: 108 YPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKR 167

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+  I   + ++         + L        + +N       H   D  L+ REV  L
Sbjct: 168 KDLNDIYNAVKMILSGYSFFPSETL-------NFISNTRPPKGGHH--DMPLSNREVTVL 218

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + ++
Sbjct: 219 RYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL 270


>gi|307322370|ref|ZP_07601730.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306891988|gb|EFN22814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
          Length = 243

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 66/225 (29%), Gaps = 17/225 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L  +            +  L    G SH   +         L     + +P         
Sbjct: 11  LRTLQSAKHRGDLHPALDELCARYGLSHMTFLVVCSGGRSGLYPDYCTTYPGKWTEIYVD 70

Query: 93  SEKDKYYNVLQRPTELFCPV--------FHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                   V+      F PV                      D     LT  +   +   
Sbjct: 71  KRYFDIDPVIDVIRWGFLPVDWSSLDRRSAQAYRLFKEARSYDIGPHGLTIPIRGSKGER 130

Query: 145 MLLFPKGRIILRDR-------LWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLT 195
            L      +  RD        + E+ +L+ Y      S       G+   L+ RE +CL 
Sbjct: 131 CLFSVSSNLPKRDWSRLGASSIHELQILSHYLHETTLSASGLREVGRYRTLSRRETQCLQ 190

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ G+ S +IA  LGIS N V  Y+ S   K    T   A+A A
Sbjct: 191 LLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKA 235


>gi|301059373|ref|ZP_07200300.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
 gi|300446602|gb|EFK10440.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
          Length = 220

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E    +++G+++  IA  L IS  TV  +   IM+K    +       A+RN +
Sbjct: 158 LSQREMEVFLLLAKGESTKAIARALFISPKTVETHRYHIMQKLEADSVVALTRLAIRNGL 217

Query: 246 V 246
           +
Sbjct: 218 I 218


>gi|239831167|ref|ZP_04679496.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239823434|gb|EEQ95002.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 231

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +L   +W    +    A+     +    +   LT ++   LT ++EG  + +IA  LG+S
Sbjct: 135 VLAGDIWTPADIELDHAHD-PEIEALIARLRTLTPQQTRVLTMLAEGLLNKQIAYELGVS 193

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             TV  +++++++K    +R+ A+    R  
Sbjct: 194 EATVKAHVSAVLQKLGVDSRTQAVILLSRIG 224


>gi|115526773|ref|YP_783684.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115520720|gb|ABJ08704.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 223

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  
Sbjct: 149 RDRLVTLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIA 208

Query: 240 AVR 242
           A +
Sbjct: 209 AAK 211


>gi|318077906|ref|ZP_07985238.1| LuxR family two-component response regulator [Streptomyces sp.
           SA3_actF]
          Length = 238

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 6/132 (4%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +                L   V  +  G  LL P+    +  R+ E       +   
Sbjct: 104 FDAIMAGAAGYVLKQINGSDLLNAVRTVATGTSLLDPRMTSRVMARIREP------EREK 157

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                   G+   L+ RE+E L  I  G T+ +IA  L ++  TV N ++SI+ K     
Sbjct: 158 PAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEKTVKNRVSSILGKLGVGR 217

Query: 233 RSGAIAYAVRNN 244
           R  A   A R  
Sbjct: 218 RIQAAMIAERLR 229


>gi|296129573|ref|YP_003636823.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
 gi|296021388|gb|ADG74624.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
          Length = 137

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+  L  ++EG+T+  I   LG+S  TV +++A I RK  T  R+  +A A+RN 
Sbjct: 75  DLSARELSVLARVAEGRTNRLIGEELGLSALTVKSHLARISRKLGTGDRAELVAIAIRNR 134

Query: 245 IV 246
           ++
Sbjct: 135 MI 136


>gi|167624392|ref|YP_001674686.1| LuxR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354414|gb|ABZ77027.1| transcriptional regulator, LuxR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 211

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D    +   LT RE E L  +  G T+  IA  L +S +T+  ++    RK    +R 
Sbjct: 137 SNDAAVDEVETLTIREREVLQVLRSGSTNIAIANKLFVSESTIKTHLYRAFRKIGVSSRG 196

Query: 235 GAIAYA 240
            AIA+A
Sbjct: 197 QAIAWA 202


>gi|114568884|ref|YP_755564.1| LuxR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339346|gb|ABI64626.1| transcriptional regulator, LuxR family [Maricaulis maris MCS10]
          Length = 141

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   +T RE++ L  +  G+++ E+A  LG+S NTV  +IA +  K    +R  AI  A 
Sbjct: 62  KSLAITPRELDVLEALVSGESNKELARTLGVSPNTVKTHIARLFDKLDVTSRIQAIETAR 121

Query: 242 RNNIV 246
              ++
Sbjct: 122 DLRLI 126


>gi|13473807|ref|NP_105375.1| transcriptional regulatory [Mesorhizobium loti MAFF303099]
 gi|14024558|dbj|BAB51161.1| transcriptional regulatory [Mesorhizobium loti MAFF303099]
          Length = 862

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           RD +   G++   +     +          LT R++E L  I  G ++  IA  L IS  
Sbjct: 776 RDIMRRNGVIRIARGPRRTT----RANSAGLTQRQMEVLQLIERGLSNKRIAEHLAISPK 831

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV++++++++ K    +R  A A A  + ++
Sbjct: 832 TVDHHVSAVLGKLDAVSRGEASAAARASGLI 862


>gi|311068596|ref|YP_003973519.1| two-component response regulator DesK [Bacillus atrophaeus 1942]
 gi|310869113|gb|ADP32588.1| two-component response regulator (DesK) [Bacillus atrophaeus 1942]
          Length = 199

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +++GK + EIA  L I   TV NYI+ I+ K   K R  AI  +    
Sbjct: 137 PLTEREKEVLELVADGKNTKEIANELSIKSGTVRNYISMILDKLEVKNRIEAITRSKEKG 196


>gi|307330274|ref|ZP_07609421.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306884071|gb|EFN15110.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 233

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  +++G ++ EIA  + +   TV  ++ +++ K   + R+ A+  A  +  
Sbjct: 170 LSEREAVVLRLMTDGLSNSEIAARMAVGPATVKTHVGAVLTKLGVRDRTQAVIAAYESGF 229

Query: 246 V 246
           V
Sbjct: 230 V 230


>gi|259047361|ref|ZP_05737762.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035983|gb|EEW37238.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 202

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L+ RE E L  ++EG  + EIA  + +S  TV NY+++++ K   + R+    Y
Sbjct: 143 HLSERENELLYLVAEGFNNKEIAEKMYLSEGTVRNYLSALLEKLELRDRTQLAVY 197


>gi|134103056|ref|YP_001108717.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008989|ref|ZP_06566962.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915679|emb|CAM05792.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 215

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 7/175 (4%)

Query: 76  SIVSSDWPFDLVRCMALS-----EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
            +V+   P  ++  + +      E  +    L  P  +       L E +          
Sbjct: 42  ELVAMHRPDVVLTDIQMPTVGGLEVTRRLTRLPDPPAVAVLTTFDLDEYVYAALQNGAAG 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L     R     + +  +G  +L  R+    LL+ + +    +       + ELT RE
Sbjct: 102 FLLKDTPPRDLAAAVHVVARGEAMLSPRIT-TKLLSTFSSGATAAQAAKARME-ELTARE 159

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E    +++G ++ EIA  L +S +TV  +I  IM K     R+     A    +
Sbjct: 160 REVAVAVAQGMSNAEIAGNLHMSLSTVKVHIGRIMTKLGMANRTQVAILAHDAGL 214


>gi|119387463|ref|YP_918497.1| two component LuxR family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119378038|gb|ABL72801.1| two component transcriptional regulator, LuxR family [Paracoccus
           denitrificans PD1222]
          Length = 160

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE + L+ + +G+ +  IA  L IS +TV++YI  + RK     R+ A   A+ 
Sbjct: 90  DVHLSRREEQVLSLLGQGERTGAIASRLEISEHTVSHYIKELYRKLGINNRADAARMAIS 149

Query: 243 NNI 245
             +
Sbjct: 150 LGL 152


>gi|24372453|ref|NP_716495.1| LuxR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24346436|gb|AAN53940.1|AE015531_6 transcriptional regulator, LuxR family [Shewanella oneidensis MR-1]
          Length = 255

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 190 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 244


>gi|315608462|ref|ZP_07883450.1| transcriptional regulator [Prevotella buccae ATCC 33574]
 gi|315249922|gb|EFU29923.1| transcriptional regulator [Prevotella buccae ATCC 33574]
          Length = 213

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 19/177 (10%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN----R 129
            D++V  D+         +++ ++   + +R  +    +F            + +     
Sbjct: 45  DDAVVMLDY-----TLFDINDVEELLILGERFRQTRWLLFSEDLSLDFVRRLIASSRQFG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                  +  IR G+       R I R R+ E+ LLA  Q            +  +LT  
Sbjct: 100 ILLKESSLEEIREGIECAIRGERFICR-RMTEM-LLAPRQNE--------EEERVKLTKT 149

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+ G T+ EIA     S +TVN +  ++ RK    T   A  YA+R  +V
Sbjct: 150 ETEVLKEIALGFTTREIAERRFSSFHTVNTHRKNLFRKLGVNTVHEATKYALRAGLV 206


>gi|312138174|ref|YP_004005510.1| hydrolase/luxr domain protein [Rhodococcus equi 103S]
 gi|311887513|emb|CBH46825.1| putative hydrolase/LuxR domain protein [Rhodococcus equi 103S]
          Length = 359

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 67/239 (28%), Gaps = 18/239 (7%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSW------TMRMYALTEYVGASHFLLVRW-- 66
                 +F +  P R D L                  T  +  +  + G    +L     
Sbjct: 114 GAPVSIAFAALFPQRVDRLILYGGYADGSDVAAPGVRTAMLGMIRAHWGLGSEMLADIFI 173

Query: 67  ---DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              D         +     P +L   +     +     L         V H   +   P 
Sbjct: 174 PDADAATRALFTRLQKEAAPAELAADLLAQCYEIDVTDLLDRVAAPTLVVHRRGDRAIPY 233

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                R  +     AR+ I L        +     +    L          +  +     
Sbjct: 234 RA--GRALAARIPGARL-ISLPGRSHFPHVGDAAAVVHAMLEFLGHG----TTALPPEPP 286

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             LT R+++    ++EG T+ +IA  LGI   +   ++  I  +    +R+   A+  R
Sbjct: 287 DALTARQLQVAALVAEGMTNRQIAQRLGIEERSAEGHVERIRLRLGVSSRAQVAAWWAR 345


>gi|290957607|ref|YP_003488789.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647133|emb|CBG70232.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 204

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G T+ E+A  L +S  TV NY+++ ++K A + R+ A+  A    
Sbjct: 143 PLTDREREVLRAAADGSTNAELAEALHLSPGTVRNYLSTAIQKLAVRNRTEAVRTAREKG 202


>gi|77404773|ref|YP_345346.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides 2.4.1]
 gi|77390423|gb|ABA81605.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 240

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             LT RE E L  I  GKT+ EIA  LG++  T+  ++ ++  K   + R+    
Sbjct: 139 VRLTRREREVLNLIGAGKTNKEIAQKLGLAEVTIKMHVRALCLKFEARNRTQLAV 193


>gi|38234459|ref|NP_940226.1| putative transcriptional regulator [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200722|emb|CAE50418.1| Putative transcriptional regulator [Corynebacterium diphtheriae]
          Length = 281

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           VH  +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 212 VHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 271

Query: 238 AYAVRNN 244
             A R  
Sbjct: 272 NAARRIG 278


>gi|85713171|ref|ZP_01044202.1| Response regulator, LuxR family protein (CheY, HTH domains)
           [Idiomarina baltica OS145]
 gi|85692995|gb|EAQ30962.1| Response regulator, LuxR family protein (CheY, HTH domains)
           [Idiomarina baltica OS145]
          Length = 210

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +   A+I   +  +      + +D    +         +         K  ELT 
Sbjct: 101 GFIPKSLPSAQIAEAISTILDGDTWVPKDNRDRL-------DGISNEDQELARKVSELTP 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++   L ++ EG  + +IA  L I+  TV  +I +I RK    +R+ A+  A R  +
Sbjct: 154 QQYRVLHFLHEGLLNKQIAYQLNITEATVKAHITAIFRKLGVYSRTQAVLVAERLQL 210


>gi|332670631|ref|YP_004453639.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332339669|gb|AEE46252.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484]
          Length = 144

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 4/146 (2%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW- 160
           +  PT+  C V   + +        + R       V   R        +  ++L+  L  
Sbjct: 1   MSSPTQQMCVVVSEIADGDGVALVQNLRRRGAPRVVVLTRRASR---GELSVLLQGGLRG 57

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
            +    A       +         ELT RE+  L  +++G+++  I   LG+S  TV ++
Sbjct: 58  AVASTTAASVARQPAPAPAPPTLPELTAREISVLKLVADGRSNRLIGEELGLSALTVKSH 117

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +A I RK  T  R+  +A + R  ++
Sbjct: 118 LARISRKLGTGDRAELVAISFRGGVL 143


>gi|269104524|ref|ZP_06157220.1| transcriptional activator of maltose regulon MalT [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161164|gb|EEZ39661.1| transcriptional activator of maltose regulon MalT [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 902

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 46/277 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMI-----PLDCTVSWTMRMYALTEYVGASHFL 62
             I L R +  + +   +L    +L+ R         +   S  +  +   E     H+L
Sbjct: 619 ARIALTRGELDKAAR--YLTLCDELMERSAFHIDWRANSEFSSLLYWHQKGEITAIEHYL 676

Query: 63  LVR------WDLFQEQKLDSIVSSDW-------PFDLVRCMALSEKDKYYNVLQRPTELF 109
           +         + FQ+ +  +I  ++          D++  +  + +            + 
Sbjct: 677 VKAEQPQQACNHFQQLQWRNIARANMYLGHYQQALDIMNMLDAACQQHNLVTDNNRNLVL 736

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVA---------RIRIGLMLLFPKGRIILRDRLW 160
             V +    N             LT +            I   L+    + + +    L+
Sbjct: 737 EAVIYKQMGNKEVALSKLKNALLLTNNTGMVGNFLCDAEIVAKLLDELIQKQHLSDLALY 796

Query: 161 EIGLLAAYQANMFKSYDVHWGKDF-----------------ELTGREVECLTWISEGKTS 203
               L     N  ++  VH+ +DF                  LT RE + L  I  G ++
Sbjct: 797 RAQQLLREMNNKERTRSVHFDEDFVEKLLTLPNIPELIRTSPLTQREWQVLGLIYSGYSN 856

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++IA  L ++  T+  +I ++ +K     R  AI  A
Sbjct: 857 EQIASELDVAATTIKTHIRNLYQKLGIANRQEAITTA 893


>gi|226363271|ref|YP_002781053.1| serine/threonine protein kinase [Rhodococcus opacus B4]
 gi|226241760|dbj|BAH52108.1| putative serine/threonine protein kinase [Rhodococcus opacus B4]
          Length = 1084

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 158  RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            RL     +A          D       +LT RE +    I+EG T+  IA  L IS  T 
Sbjct: 997  RLGFHAAIAYALGERLP--DATGDSLVKLTKRERQVAELIAEGLTNRAIAARLVISPRTA 1054

Query: 218  NNYIASIMRKTATKTRSGAIAYAVRNN 244
              ++  ++ K    +R+   A+ V   
Sbjct: 1055 QGHVEHVLTKLGFTSRAQIAAWIVEQG 1081


>gi|54026123|ref|YP_120365.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54017631|dbj|BAD59001.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 285

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE++ L+ ++ G T+ E+A  L +   TV +Y+ + M K    +R  A+  A R  
Sbjct: 223 KLSRRELDVLSEVALGCTNQEVAQRLSLGPETVKSYLRNAMTKLDAHSRHEAVVTARRLG 282

Query: 245 IV 246
           ++
Sbjct: 283 LL 284


>gi|320007676|gb|ADW02526.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 281

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 4/112 (3%)

Query: 136 DVARIRIGLMLLFPKG-RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
           DV      L  L P+    +LRD L  + +     +          G+   L  REV+ +
Sbjct: 172 DVREAHRELRALAPRIVDPVLRDEL--LAVCGRLASASGPERGPAAGRS-RLAPREVDVV 228

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G T+   A  LG+   TV +Y+ S MRK    TR  A+  A R  ++
Sbjct: 229 ACVASGATNAVAAERLGLRPETVKSYLRSAMRKLGAHTRLEAVVAARRAGLL 280


>gi|255691480|ref|ZP_05415155.1| transcriptional regulator, LuxR family [Bacteroides finegoldii DSM
           17565]
 gi|260622871|gb|EEX45742.1| transcriptional regulator, LuxR family [Bacteroides finegoldii DSM
           17565]
          Length = 203

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 36/74 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S +        L+ RE E +  + +G T+ EIA  L +S +TV  +  +I +K    +
Sbjct: 122 VPSEEEDLENQDALSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHS 181

Query: 233 RSGAIAYAVRNNIV 246
            +G   YA+ N +V
Sbjct: 182 AAGLTIYAIVNKLV 195


>gi|183980157|ref|YP_001848448.1| LuxR family transcriptional regulator [Mycobacterium marinum M]
 gi|183173483|gb|ACC38593.1| transcriptional regulatory protein (LuxR- family) [Mycobacterium
            marinum M]
          Length = 1117

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 13/164 (7%)

Query: 84   FDLVRCMA-LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D + C+A L+  +       R       + H   E         + +C +     R  +
Sbjct: 962  ADTLECLAELAATEGDRREAARLLASAEAIRHRTGEVRLKIL---DAHCEVVLAELRNEL 1018

Query: 143  G---LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
            G      ++ +G +I  D +       +Y      +          LT  E + +  + E
Sbjct: 1019 GEQDFAAVWGQGAVISTDEVI------SYVRRGRGTRRRPSSGWGSLTPTEHDVVRLVQE 1072

Query: 200  GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            G ++ +IA  + IS  TV  ++  +  K    +R   +    R+
Sbjct: 1073 GLSNKDIAARMFISPRTVQTHLTHVYTKLGLTSRIQLVHEVARH 1116


>gi|160883312|ref|ZP_02064315.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483]
 gi|156111296|gb|EDO13041.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483]
          Length = 233

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 163 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 222

Query: 243 NNIV 246
             IV
Sbjct: 223 AGIV 226


>gi|118590980|ref|ZP_01548380.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118436502|gb|EAV43143.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 217

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I  G+++ EIA  LGIS  TV+ +  S+M+K    +    +A A++  +
Sbjct: 151 LTDRERQTLNLILAGRSNKEIAEGLGISIKTVDKHRTSLMQKLNVHSVPQLMAKALKEGM 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|17987890|ref|NP_540524.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M]
 gi|23501222|ref|NP_697349.1| LuxR family DNA-binding response regulator [Brucella suis 1330]
 gi|62289309|ref|YP_221102.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|82699239|ref|YP_413813.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|161618298|ref|YP_001592185.1| two component LuxR family transcriptional regulator [Brucella canis
           ATCC 23365]
 gi|163842602|ref|YP_001627006.1| two component LuxR family transcriptional regulator [Brucella suis
           ATCC 23445]
 gi|189023562|ref|YP_001934330.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225626842|ref|ZP_03784881.1| glycerol metabolism activator [Brucella ceti str. Cudo]
 gi|225851861|ref|YP_002732094.1| LuxR family two component transcriptional regulator [Brucella
           melitensis ATCC 23457]
 gi|237814800|ref|ZP_04593798.1| glycerol metabolism activator [Brucella abortus str. 2308 A]
 gi|254688629|ref|ZP_05151883.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 6 str. 870]
 gi|254696752|ref|ZP_05158580.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701135|ref|ZP_05162963.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 5 str. 513]
 gi|254707944|ref|ZP_05169772.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M163/99/10]
 gi|254709478|ref|ZP_05171289.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis B2/94]
 gi|254718509|ref|ZP_05180320.1| two component transcriptional regulator, LuxR family protein
           [Brucella sp. 83/13]
 gi|254729661|ref|ZP_05188239.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 4 str. 292]
 gi|256030972|ref|ZP_05444586.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M292/94/1]
 gi|256044043|ref|ZP_05446954.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060463|ref|ZP_05450634.1| two component transcriptional regulator, LuxR family protein
           [Brucella neotomae 5K33]
 gi|256112839|ref|ZP_05453760.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|256159018|ref|ZP_05456855.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M490/95/1]
 gi|256254376|ref|ZP_05459912.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti B1/94]
 gi|256256876|ref|ZP_05462412.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 9 str. C68]
 gi|256264624|ref|ZP_05467156.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256368775|ref|YP_003106281.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260168107|ref|ZP_05754918.1| DNA-binding response regulator, LuxR family protein [Brucella sp.
           F5/99]
 gi|260545936|ref|ZP_05821677.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260563402|ref|ZP_05833888.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260567065|ref|ZP_05837535.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260754100|ref|ZP_05866448.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757320|ref|ZP_05869668.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761144|ref|ZP_05873487.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883126|ref|ZP_05894740.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261221537|ref|ZP_05935818.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261315435|ref|ZP_05954632.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317000|ref|ZP_05956197.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261324454|ref|ZP_05963651.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751668|ref|ZP_05995377.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261757557|ref|ZP_06001266.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|265983478|ref|ZP_06096213.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|265988037|ref|ZP_06100594.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265990454|ref|ZP_06103011.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994282|ref|ZP_06106839.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265997500|ref|ZP_06110057.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|294851704|ref|ZP_06792377.1| two component LuxR family transcriptional regulator [Brucella sp.
           NVSL 07-0026]
 gi|297247726|ref|ZP_06931444.1| two component LuxR family transcriptional regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306838316|ref|ZP_07471162.1| two component LuxR family transcriptional regulator [Brucella sp.
           NF 2653]
 gi|306842417|ref|ZP_07475069.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306844955|ref|ZP_07477536.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO1]
 gi|17983624|gb|AAL52788.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M]
 gi|23347103|gb|AAN29264.1| DNA-binding response regulator, LuxR family [Brucella suis 1330]
 gi|62195441|gb|AAX73741.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1
           str. 9-941]
 gi|82615340|emb|CAJ10301.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Brucella melitensis biovar Abortus 2308]
 gi|161335109|gb|ABX61414.1| two component transcriptional regulator, LuxR family [Brucella
           canis ATCC 23365]
 gi|163673325|gb|ABY37436.1| two component transcriptional regulator, LuxR family [Brucella suis
           ATCC 23445]
 gi|189019134|gb|ACD71856.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225618499|gb|EEH15542.1| glycerol metabolism activator [Brucella ceti str. Cudo]
 gi|225640226|gb|ACO00140.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis ATCC 23457]
 gi|237789637|gb|EEP63847.1| glycerol metabolism activator [Brucella abortus str. 2308 A]
 gi|255998933|gb|ACU47332.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260097343|gb|EEW81218.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260153418|gb|EEW88510.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156583|gb|EEW91663.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260667638|gb|EEX54578.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671576|gb|EEX58397.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674208|gb|EEX61029.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872654|gb|EEX79723.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260920121|gb|EEX86774.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261296223|gb|EEX99719.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300434|gb|EEY03931.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261304461|gb|EEY07958.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737541|gb|EEY25537.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|261741421|gb|EEY29347.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262551968|gb|EEZ07958.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|262765395|gb|EEZ11184.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001238|gb|EEZ13813.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094991|gb|EEZ18699.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660234|gb|EEZ30495.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|264662070|gb|EEZ32331.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|294820293|gb|EFG37292.1| two component LuxR family transcriptional regulator [Brucella sp.
           NVSL 07-0026]
 gi|297174895|gb|EFH34242.1| two component LuxR family transcriptional regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306274587|gb|EFM56376.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO1]
 gi|306287439|gb|EFM58916.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306406607|gb|EFM62840.1| two component LuxR family transcriptional regulator [Brucella sp.
           NF 2653]
 gi|326408357|gb|ADZ65422.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326538072|gb|ADZ86287.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis M5-90]
          Length = 213

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+    R  
Sbjct: 149 LTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIG 207


>gi|86140863|ref|ZP_01059422.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832805|gb|EAQ51254.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 208

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 17/217 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R+   +   S    +  L + + A   L+       E  L   V    P  ++  + +
Sbjct: 1   MIRIAIGEDHQSLIDGIALLIQDI-AHIQLVCSATNGLE--LVEAVRKHQPDVIITDIRM 57

Query: 93  SEKDK--YYNVLQRPTELFCPVFHTL---PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            + D      ++++       +  T+    + +            L     +     +  
Sbjct: 58  PKMDGIQATEIIKKEFPKIAVIAFTMFDQQDAVQQMLDAGASGYILKNSSLQTLKNAIET 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             +G      ++             F+       K   LT R++E L  I++GKTS EIA
Sbjct: 118 VAEGTPFFDSQID---------LRAFEENHSATSKSGLLTKRQLEILRLIAQGKTSREIA 168

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L I  +TV+ +  ++MR    K +   + YA+   
Sbjct: 169 DELFIGVHTVDTHRKNMMRILELKGKGELLRYALDRK 205


>gi|262407478|ref|ZP_06084026.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|262354286|gb|EEZ03378.1| transcriptional regulator [Bacteroides sp. 2_1_22]
          Length = 219

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 149 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 208

Query: 243 NNIV 246
             IV
Sbjct: 209 AGIV 212


>gi|290958801|ref|YP_003489983.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260648327|emb|CBG71438.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 220

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +T RE + L  ++ G T+ EIA  L IS +TV  ++AS+M K   + R     +A    
Sbjct: 155 PVTAREEQVLLSVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYETR 214

Query: 245 IV 246
            +
Sbjct: 215 RI 216


>gi|256379381|ref|YP_003103041.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923684|gb|ACU39195.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 213

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ RE E L  I++G  + EIA  L  S+ TV + +  I  +   + R+ A+AYA+R  +
Sbjct: 153 MSNRETEVLRLIADGYETREIAERLCYSQRTVKSILHDITNRFGLRNRAHAVAYALREGL 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|261408559|ref|YP_003244800.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. Y412MC10]
 gi|261285022|gb|ACX66993.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. Y412MC10]
          Length = 902

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  I++G ++ +I+  L ++ +TV  +   I  K     R+ A+A A    
Sbjct: 841 PLSRRELEVLRLIAQGLSNRQISEKLFVALSTVKGHNRIIFDKLQATRRTEAVARARELG 900

Query: 245 IV 246
           ++
Sbjct: 901 LL 902


>gi|127514122|ref|YP_001095319.1| LuxR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639417|gb|ABO25060.1| transcriptional regulator, LuxR family [Shewanella loihica PV-4]
          Length = 220

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L + Q +  +          +LT RE   +  +S G  + EIA  L IS +TV  +I+SI
Sbjct: 135 LVSRQDSGVELTQDMVAMLQKLTTRERTIIQLVSSGARNKEIADRLCISEHTVKAHISSI 194

Query: 225 MRKTATKTRSGAIAY 239
            RKT ++ R   + +
Sbjct: 195 FRKTQSRNRVELLRW 209


>gi|331694091|ref|YP_004330330.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948780|gb|AEA22477.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 890

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 152 RIILRDRLWEIGLLAAYQAN--------MFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           ++ L +R     LLA                + DV  G    LT RE++ L  +      
Sbjct: 782 QVFLDERRSLAALLATVATPGGVLAAQVRRPTADVPGGPVDALTARELDVLRLLDTDLDG 841

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S NTV  +  +I  K     R  A+       ++
Sbjct: 842 PDIARRLFVSVNTVRTHTKNIYAKLGVNNRRAAVRRGDELGLL 884


>gi|300789929|ref|YP_003770220.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299799443|gb|ADJ49818.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 200

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +  +L    G   L  RL +  LLA  Q       + +      L  RE + L  ++EG 
Sbjct: 97  VTAVLAAGDGTANLPPRL-QGALLAQVQRMRKDVLEPNGLTLSGLAARECDVLRLVAEGF 155

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EIA  L  S  TV N +  +M +     R+ A+AYA+R   +
Sbjct: 156 GTEEIAAKLCYSERTVKNVLYGLMTRCGLNNRAHAVAYALRAGAI 200


>gi|260768300|ref|ZP_05877234.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260616330|gb|EEX41515.1| transcriptional regulator [Vibrio furnissii CIP 102972]
          Length = 212

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA 
Sbjct: 147 KPNPLSRREEAVLKLVAQGHSSKKIASLLNISYRTVETHRQNIKHKLDIHSTAELAHYAS 206

Query: 242 RNNIV 246
           +  ++
Sbjct: 207 QRGLL 211


>gi|238064601|ref|ZP_04609310.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237886412|gb|EEP75240.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 225

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            QA +  S  VH  +   LT RE E +  ++EG ++ +IA  LGIS +     +AS+M K
Sbjct: 149 DQARVELSTPVHPAR---LTARESEAMGLMAEGMSNKQIAGRLGISSHGAKRLVASLMLK 205

Query: 228 TATKTRSGAIAYAVRNNIV 246
             +  R+ A+  A+++ +V
Sbjct: 206 LGSPNRTAAVVNAIKSGLV 224


>gi|52842163|ref|YP_095962.1| transcriptional regulator LuxR [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|40644088|emb|CAE46907.1| putative transcriptional regulator [Legionella pneumophila]
 gi|52629274|gb|AAU28015.1| transcriptional regulator LuxR [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 223

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE EC+  +  GK++ EI  +L +S+ T+ +YI +I  K   + ++  +  AV N
Sbjct: 145 YGLTDREHECVFLLIRGKSAKEIGALLSLSKRTIESYIENIKNKMDCRNKAEILVKAVLN 204

Query: 244 N 244
            
Sbjct: 205 G 205


>gi|327459203|gb|EGF05551.1| two component system response regulator [Streptococcus sanguinis
           SK1057]
          Length = 227

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 82  WPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTF 135
            P  ++  + +   D       V ++  ++   +  T  ++    + +    + Y     
Sbjct: 47  HPDVILMDIRMPVMDGVLCTKAVKEQYPDVKIIILTTFDDDEFIFSALKYGASGYILKGV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  ++  G +I  +   ++  + +  A    +  V      +++  E + + 
Sbjct: 107 STEELHEAIQTVYRGGAMINPNIATKVFKIFSQMAQSNFAITVTEENIEDMSRTEWKIIQ 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I  G ++ E+A  L +S  TV NY++ I+ K   + R+    +AV+  +
Sbjct: 167 QIGFGISNKEVAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQTGV 216


>gi|313905807|ref|ZP_07839165.1| transcriptional regulator, LuxR family [Eubacterium cellulosolvens
           6]
 gi|313469321|gb|EFR64665.1| transcriptional regulator, LuxR family [Eubacterium cellulosolvens
           6]
          Length = 262

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 13/183 (7%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           + ++   +P DL   M L+EK           E          +        D    ++T
Sbjct: 72  EELLIKKYPEDLTTMMNLAEKAGAIRRSGICAEEERFCAPYYKDCYEKYDIYDTLQLAVT 131

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-------KSYDVHWG------ 181
                I +  +    +      + ++ +  L+ + + +F       ++ D   G      
Sbjct: 132 GKHELIAVISLYRTSEAGAFADEDVYLLKALSKHLSKVFYKHCRQNQTIDSVSGTIEEIK 191

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               +T +E E LT I   K++ EI   L I  +T+  ++ +I RK    +R   + +AV
Sbjct: 192 AKVHMTPKETEILTLIFLAKSNLEICEELKIKEHTLQKHLQNIYRKLNVCSRWELLRFAV 251

Query: 242 RNN 244
            N 
Sbjct: 252 PNG 254


>gi|227355895|ref|ZP_03840287.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906]
 gi|227163883|gb|EEI48785.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906]
          Length = 201

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE++ L  ++ G  + +IA  L IS  TV  +I +I++K    +R  A    +++
Sbjct: 142 LTKRELDVLQEVAVGMKNKQIAENLFISEETVKVHIRNILKKLQVTSRLAASLILIKH 199


>gi|295838815|ref|ZP_06825748.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295827204|gb|EDY42294.2| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 260

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 6/132 (4%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +                L   V  +  G  LL P+    +  R+ E       +   
Sbjct: 126 FDAIMAGAAGYVLKQINGSDLLTAVRTVATGTSLLDPRTTSRVMARIREP------RPGK 179

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +      G+   L+ RE+E L  I  G T+ +IA  L ++  TV N ++SI+ K     
Sbjct: 180 PEPSRAVPGELARLSPRELEILDLIGLGLTNRQIAERLYLAEKTVKNRVSSILGKLGVGR 239

Query: 233 RSGAIAYAVRNN 244
           R  A   A R  
Sbjct: 240 RIQAAMLAERLR 251


>gi|323700520|ref|ZP_08112432.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. ND132]
 gi|323460452|gb|EGB16317.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans ND132]
          Length = 216

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 33/81 (40%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA    +             L+ RE+E    +++G T  E A  L IS  TV  +  ++M
Sbjct: 134 AALLRQLSPERSGREDLFDHLSPRELEVFRLLADGLTVKEAAAELHISPKTVETHKYNLM 193

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K    T       A+R+ ++
Sbjct: 194 EKLEVGTIPDLTKLAIRHGLI 214


>gi|320008377|gb|ADW03227.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 202

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R+   ++        +  D L    L+A        +  +       L  REV+ L  +
Sbjct: 96  HRLLRAVLAASRGDGDLPSDLLGR--LIAQVGTLQRGTTSMSGATASGLAPREVDVLRLV 153

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG  + EIA  L  S  TV N +  +  +   + R+ A+AYA+R   +
Sbjct: 154 AEGMDTGEIASKLSYSERTVKNVMHGLTTRLQLRNRAHAVAYALREGYI 202


>gi|319793602|ref|YP_004155242.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315596065|gb|ADU37131.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 212

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA----NMFKSYDVHWGKDFELTGR 189
           T ++ R            + +  ++L E    A  Q        ++ +    +  +L+ R
Sbjct: 94  TVEMCRRAFKAGAAEFLEKPVDDEQLLEALQQAVRQHVRTRERSQADNAARERVAQLSER 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAV 241
           E E L +I +G T+ EIA  L +S  TV  + A++  K    + +  I  YAV
Sbjct: 154 EREVLAFIVQGLTNKEIARTLALSPRTVETHRANLFAKLDCDSLAQLIRRYAV 206


>gi|315442711|ref|YP_004075590.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315261014|gb|ADT97755.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 337

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              G    +T RE++ LT    G T+ +IA  L IS  T  +++ S   K     R+   
Sbjct: 253 TRTGLPMGITPRELDALTLAVRGLTNGQIAAQLFISARTAGHHLESASAKLGAPNRAACA 312

Query: 238 AYAVRNNIV 246
           ++AV   ++
Sbjct: 313 SHAVALGLL 321


>gi|300694155|ref|YP_003750128.1| transcription regulator protein, luxr family [Ralstonia
           solanacearum PSI07]
 gi|299076192|emb|CBJ35505.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 175

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 34/69 (49%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +M  +      +   LT R+ + L  ++ GK++ EIA  L IS  TV  ++  I+ +   
Sbjct: 95  DMAAASSSASKQRPALTPRQQDILREVASGKSNVEIARTLHISVETVKTHMQQILMRLEA 154

Query: 231 KTRSGAIAY 239
           + R+  +A 
Sbjct: 155 RNRTELVAM 163


>gi|182439415|ref|YP_001827134.1| LuxR family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178467931|dbj|BAG22451.1| putative LuxR-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 98

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LTGRE + L  ++ G T  EIA  L +   T   ++A+++ KT  + R+ A+  A    
Sbjct: 23  LTGREADVLRLMAAGLTDAEIAGRLQVGPATAKTHVAAVLAKTGARDRTQAVIVAYEAG 81


>gi|148981530|ref|ZP_01816447.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145960831|gb|EDK26164.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 212

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE   L  +++G++S E+A  L IS  TV  +  +I  K    + +    YAV   
Sbjct: 150 PLSRREEAVLKLVAKGESSKEVAKALNISYRTVETHRQNIKHKLDIHSTAELAKYAVNCG 209

Query: 245 IV 246
           +V
Sbjct: 210 LV 211


>gi|144899494|emb|CAM76358.1| regulatory protein, LuxR [Magnetospirillum gryphiswaldense MSR-1]
          Length = 253

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 3/119 (2%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK---SYDVHWGKDFELT 187
              +F          +  P       DR+W     A  Q          + H    F L+
Sbjct: 133 LPASFADGFGASAFSVHTPDLSFAGFDRMWRENGEAIRQIACAFDICMREDHMPDFFPLS 192

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++EG    +IA +L +   TV  +I S  RK    T + A+A A+   ++
Sbjct: 193 PREQEILLRLTEGLRPQQIAFLLSLHEGTVEKHIESARRKLKAATVTQAVATALIFGLI 251


>gi|158312386|ref|YP_001504894.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158107791|gb|ABW09988.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 201

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           A     +   T  V  +   + ++   GR +  +       LAA         +     D
Sbjct: 95  AAGARGFLPKTVSVQVLADVVRVVHGGGRYVDPE-------LAA---------EAIAAGD 138

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L   + G   +EIA  L +SR TV NY++S + K     R  A+  A   
Sbjct: 139 SPLTPREAEVLELAAGGAPVEEIAARLSLSRGTVRNYLSSAVAKLGAVNRHEAVQLARVR 198

Query: 244 NIV 246
             +
Sbjct: 199 GWI 201


>gi|332670939|ref|YP_004453947.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332339977|gb|AEE46560.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 218

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H      LT  E+  L  I EG ++ EIA  LG++  TV N+I S++ K   + R+   A
Sbjct: 143 HEDPTENLTPSELRVLDLIGEGLSNREIAERLGVAEKTVKNHITSLLAKMGLQRRTQVAA 202

Query: 239 Y-AVRNNI 245
           + A R ++
Sbjct: 203 WVASRKHV 210


>gi|298245547|ref|ZP_06969353.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553028|gb|EFH86893.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 201

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 51/154 (33%), Gaps = 16/154 (10%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+     + VL R   +    F                +       + + I L  +   
Sbjct: 62  GLAAAQALHEVLPRCRCVILTTFGRSGYLRRAMESGVVGFLLKDAPASELAIALRRVMAG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            R++  D       LAA    M             LT RE E L     G +  EIA  L
Sbjct: 122 ERVVDPD-----LALAALSEGMNP-----------LTPREREVLAATLPGISHAEIATRL 165

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +S  TV N++++ M+K   + R  A   A +  
Sbjct: 166 ALSEGTVRNHLSAAMQKLEARNRMEAARLAEQKG 199


>gi|311742977|ref|ZP_07716785.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311313657|gb|EFQ83566.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 216

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 13/134 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          +        DV R    +M    +G  +   R+ E   +  + + 
Sbjct: 90  VFAALRAGARGYLLKEAGAD----DVERTLAAVM----RGEAVFGPRVAE--QVVGFFSG 139

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +S    +     LT RE E L  ++ G  +  IA  L +S  TV N ++ ++ K   +
Sbjct: 140 IGRSSPQAFP---HLTVREGEVLDLMARGLDNASIARRLFVSEKTVRNRVSDVLAKLQAR 196

Query: 232 TRSGAIAYAVRNNI 245
           TR+ A+A A    I
Sbjct: 197 TRAEAVARARDAGI 210


>gi|111024836|ref|YP_707256.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|29647414|dbj|BAC75412.1| response regulator [Rhodococcus sp. RHA1]
 gi|110823815|gb|ABG99098.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 209

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+     A    +
Sbjct: 148 LSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDAGL 207

Query: 246 V 246
           +
Sbjct: 208 L 208


>gi|333027004|ref|ZP_08455068.1| putative LuxR family two-component response regulator [Streptomyces
           sp. Tu6071]
 gi|332746856|gb|EGJ77297.1| putative LuxR family two-component response regulator [Streptomyces
           sp. Tu6071]
          Length = 264

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 6/132 (4%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +                L   V  +  G  LL P+    +  R+ E       +   
Sbjct: 130 FDAIMAGAAGYVLKQINGSDLLNAVRTVATGTSLLDPRMTSRVMARIREP------EPEK 183

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                   G+   L+ RE+E L  I  G T+ +IA  L ++  TV N ++SI+ K     
Sbjct: 184 PAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEKTVKNRVSSILGKLGVGR 243

Query: 233 RSGAIAYAVRNN 244
           R  A   A R  
Sbjct: 244 RIQAAMIAERLR 255


>gi|317404127|gb|EFV84576.1| hypothetical protein HMPREF0005_04471 [Achromobacter xylosoxidans
           C54]
          Length = 60

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  +S G ++ E A  L IS +TV  ++ S+ RK    TR+ A   A+ + ++
Sbjct: 1   SQRELEVLRQVSLGASNKEAARALDISPSTVRTHLESVFRKLDCSTRAAATLKALTSGLL 60


>gi|221633529|ref|YP_002522754.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
 gi|221156816|gb|ACM05943.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
          Length = 257

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT-SDEIAVILGISRNTVNNYIAS 223
           LA      F    VH  +   LT RE E L  + +G T + E+A  L IS NTV  ++ +
Sbjct: 165 LARRVLQEFGREGVHRPEGPALTERERELLELLVQGVTSNRELAQRLFISENTVKYHLRN 224

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           IM K   + R+  IAYA+R  +V
Sbjct: 225 IMTKLHLENRAQVIAYALRTGLV 247


>gi|239815768|ref|YP_002944678.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239802345|gb|ACS19412.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 213

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA----NMFKSYDVHWGKDFELTGR 189
           T ++ R            + +  ++L E    A  Q        ++ +    +  +L+ R
Sbjct: 95  TVEMCRRAFKAGAAEFLEKPVDDEQLLEALQQAVRQHVRSRERSQADNAARERVAQLSER 154

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAV 241
           E E L +I +G T+ EIA  L +S  TV  + A++  K    + +  I  YAV
Sbjct: 155 EREVLAFIVQGLTNKEIARTLALSPRTVETHRANLFAKLDCDSLAQLIRRYAV 207


>gi|163788538|ref|ZP_02182983.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1]
 gi|159875775|gb|EDP69834.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1]
          Length = 207

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+ RE + L  +SEG + D IA  L IS+NT+  ++ +I  K    +   A+  A + 
Sbjct: 145 IELSKREKDVLLQLSEGNSYDSIAENLFISKNTIKFHLKNIYIKLQVNSNIEAVQKANKE 204

Query: 244 NIV 246
           N++
Sbjct: 205 NLL 207


>gi|150377825|ref|YP_001314420.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150032372|gb|ABR64487.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 243

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 75/226 (33%), Gaps = 19/226 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L  +            +  L E+ G SH  ++               + +P         
Sbjct: 11  LRTLQAAKHRADLQSALGELCEHYGVSHMTILVVCSGGRSGSYPYCCTTYPERWTEKYVG 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
               +   V+      F PV  +  +  +  A    +  +  +D+    + + +  PKG 
Sbjct: 71  KCFFEIDPVIDVIRWGFLPVDWSSLDRRSEQAHRLFK-EARLYDIGPHGLTIPIRGPKGE 129

Query: 153 IIL----------------RDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECL 194
             L                   + E+ +L+ Y      S     G D    L+ RE +C 
Sbjct: 130 RCLLSVTSNLPGRHWSRLRASSIHELQILSHYLHETVLSASGLRGTDRYRNLSRRESQCF 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             ++ G+ S +IA  LGIS N V  Y+ S   K    T   A+A A
Sbjct: 190 QLLATGRISKQIAADLGISENAVKLYLRSARMKLGAATSHQAVARA 235


>gi|163939641|ref|YP_001644525.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861838|gb|ABY42897.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 224

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 87  VRCMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   ++  +    + +  +   L    F      +         Y     D  RIR  +
Sbjct: 68  VRMPNMNGVEATKLICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 127

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I       +N+ +S +     D  L T RE+  +  I++G ++
Sbjct: 128 KGVYNGQTVMQDVVLDKIK------SNLMESKEEESKIDKSLFTERELSIIALIAKGFSN 181

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 182 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 217


>gi|238796086|ref|ZP_04639597.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
 gi|238720031|gb|EEQ11836.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
          Length = 240

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E + W S GK+  EIA+ILG+   T+ N++  ++RK        AI+ AV   +
Sbjct: 173 FSNRENEIIYWASVGKSYQEIALILGVKLTTIKNHMGKVVRKLGVTNAKHAISIAVELQL 232

Query: 246 V 246
           +
Sbjct: 233 I 233


>gi|237715864|ref|ZP_04546345.1| transcriptional regulator [Bacteroides sp. D1]
 gi|229443511|gb|EEO49302.1| transcriptional regulator [Bacteroides sp. D1]
          Length = 221

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R
Sbjct: 151 DHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMR 210

Query: 243 NNIV 246
             IV
Sbjct: 211 AGIV 214


>gi|325299333|ref|YP_004259250.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
 gi|324318886|gb|ADY36777.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
          Length = 268

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 13/185 (7%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +V     +++ ++  V     F+  + +++ EK  +              F+   +N   
Sbjct: 96  IVFSHAKEDELIERHVLELRFFNFTKELSIKEKTNFSASC-------ILSFYRTGDNEKV 148

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                 RY S     A   + L L       I  +R  + G++           D++   
Sbjct: 149 KILHTTRYFS---CSANGSVSLGLCTYIPYPISHNR--QDGIIVNLLTGETVGRDIYEAS 203

Query: 183 DFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D + L+ R++E L+ I++G  S +IA  L IS  TVN +   I+        + A+  A+
Sbjct: 204 DRKILSRRQLEILSLIAKGVPSKQIADNLNISIYTVNRHRQDILATLKVANTAAAVEIAL 263

Query: 242 RNNIV 246
           R N++
Sbjct: 264 RMNLI 268


>gi|302531617|ref|ZP_07283959.1| predicted protein [Streptomyces sp. AA4]
 gi|302440512|gb|EFL12328.1| predicted protein [Streptomyces sp. AA4]
          Length = 941

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S     G   EL+ RE E    ++EG+T+ +IA  L +S  TV  ++A ++RK   ++R
Sbjct: 869 PSQRGRRGYGRELSPREREVAEMLAEGRTNRQIADGLFLSPRTVEQHVAKVLRKLGARSR 928

Query: 234 SGAIAY 239
           +     
Sbjct: 929 TDVARK 934


>gi|163736433|ref|ZP_02143852.1| transcriptional regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|163741032|ref|ZP_02148424.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161385385|gb|EDQ09762.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161390303|gb|EDQ14653.1| transcriptional regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 251

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 26/194 (13%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-----------------TELFCPVFHTLP 117
           D ++ S+   + V+    S       +LQ                    +   P    + 
Sbjct: 53  DFVILSNHCAEYVQGFVNSGLYFDAPMLQWALNNEGAGSWRMVQEQLAQQTLTPQAQKVI 112

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQA 170
           +      G+   Y +++F  A  R    +       + +D + EI        +L    A
Sbjct: 113 D-FNKAMGVRAGY-TVSFYSASQRFKGAISLAAEEDLSQDDVDEIWAKDGHDIILMNNVA 170

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++      +   +  LT R+ E L W+ +GKT+ +IA+++G++  TV  ++       A 
Sbjct: 171 HLKILTMPYDPPNRGLTKRQREALQWVGDGKTTQDIALLMGLTPATVEKHLRLAREALAV 230

Query: 231 KTRSGAIAYAVRNN 244
           +T + A+  A  +N
Sbjct: 231 ETTAHAVLKAALHN 244


>gi|119775211|ref|YP_927951.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767711|gb|ABM00282.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 238

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D   GK  +LT ++   L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A
Sbjct: 161 DQVAGKLADLTPQQYRVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 220

Query: 237 IAYAVRN 243
           +  A++ 
Sbjct: 221 VI-ALQQ 226


>gi|323357168|ref|YP_004223564.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323273539|dbj|BAJ73684.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 200

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 18/158 (11%)

Query: 91  ALSEKDKYYNVLQR-PTELFCPVFHTLPENITPPAGMD-NRYCSLTFDVARIRIGLMLLF 148
            L   D    +L+R P+       H  P  +    G   + +   +     +   +  + 
Sbjct: 59  GLDGVDTAARILRRVPSRCVIVTRHARPGVLRRALGAGVDGFLPKSRPADDVAAVIREVA 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              R +  +                 + D    +   LT RE++ L   + G+T  EIA 
Sbjct: 119 AGRRYVDPE----------------IAADALSDERSPLTDRELDVLRAGARGETVAEIAA 162

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  TV N+++S++ K    +R  A  +A     +
Sbjct: 163 SLHLSAGTVRNHVSSVLGKLGLASRQQATIHARERGWI 200


>gi|319902814|ref|YP_004162542.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
 gi|319417845|gb|ADV44956.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
          Length = 220

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK +      A  YA+
Sbjct: 149 KNDLLTAAERSILKEIALGKTTKEIAAEKNLSFHTVNSHRKNIFRKLSVNNAHEATKYAM 208

Query: 242 RNNIV 246
           +  IV
Sbjct: 209 KAGIV 213


>gi|302521038|ref|ZP_07273380.1| two component system response regulator [Streptomyces sp. SPB78]
 gi|302429933|gb|EFL01749.1| two component system response regulator [Streptomyces sp. SPB78]
          Length = 239

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 2/155 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L   +++  VL          F          AG    +   + D   +  G+  L   
Sbjct: 81  GLGAAEEFARVLPGTAVGMLTTFSEGEYVERALAGGAAGFLLKSGDPYELIAGVRALAAG 140

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  +       +  L        +           LT RE E L  ++ G ++  IA  L
Sbjct: 141 GAFLAPRVTRHV--LDGLGGRRLERAAGARRAVARLTPREREVLVLLAGGLSNAGIAERL 198

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +S  TV  Y++ ++ +     R  A   A    +
Sbjct: 199 RLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 233


>gi|240140620|ref|YP_002965100.1| putative transcriptional regulator, PAS domain S-box
           [Methylobacterium extorquens AM1]
 gi|240010597|gb|ACS41823.1| putative transcriptional regulator, PAS domain S-box
           [Methylobacterium extorquens AM1]
          Length = 500

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I +G T  EIA  LG+S +TV N++AS+ RK     RS  + +A    
Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484

Query: 245 I 245
           I
Sbjct: 485 I 485


>gi|226349997|ref|YP_002777110.1| two-component response regulator [Rhodococcus opacus B4]
 gi|226245909|dbj|BAH47173.1| two-component response regulator [Rhodococcus opacus B4]
          Length = 209

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+     A    +
Sbjct: 148 LSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDAGL 207

Query: 246 V 246
           +
Sbjct: 208 L 208


>gi|163853215|ref|YP_001641258.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163664820|gb|ABY32187.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 500

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I +G T  EIA  LG+S +TV N++AS+ RK     RS  + +A    
Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484

Query: 245 I 245
           I
Sbjct: 485 I 485


>gi|163119694|ref|YP_081082.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|145903205|gb|AAU25444.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
          Length = 212

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 9/155 (5%)

Query: 89  CMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            + +   D                    F      +         Y     +  RIR  +
Sbjct: 55  DVRMPNMDGVEAARLISETGAKPFILTTFDDDEYIVAAIRNGAKGYLLKNAEPERIRDAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +F    ++    L +I    A         D         T RE+  +  I+ G ++ 
Sbjct: 115 KSVFNGHIVMQDIILDKIKSNLAEHKEAEPKIDESL-----FTERELGIMALIARGLSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI+SI+ KT  + R+    Y
Sbjct: 170 EISKELFISEGTIANYISSILGKTGLEHRTQIAIY 204


>gi|134101186|ref|YP_001106847.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133913809|emb|CAM03922.1| protein kinase/transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 749

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    +++G ++ EIA  L I++ TV+ ++  I  K    +R    A+  + N
Sbjct: 683 PLTRREREIAELVTQGLSNKEIASRLVIAKRTVDAHVEHIFTKLGLNSRIQVAAWMAQQN 742


>gi|31792032|ref|NP_854525.1| nitrate/nitrite response transcriptional regulatory protein NarL
           [Mycobacterium bovis AF2122/97]
 gi|31617619|emb|CAD93729.1| POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY
           PROTEIN NARL [Mycobacterium bovis AF2122/97]
          Length = 216

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  +
Sbjct: 155 LSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRL 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|310643281|ref|YP_003948039.1| transcriptional regulatory protein degu (protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
 gi|309248231|gb|ADO57798.1| Transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
          Length = 216

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 17/137 (12%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L    +     +     L   +  I  G   + PK              +A      
Sbjct: 92  FHILKNGASGYVLKNAPDEELLLAIRTIHGGGTYIHPK--------------MATSLVRE 137

Query: 173 FKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           F   D     +     L+ RE+E L  +++G  + E+A  L IS  TV    A IM K  
Sbjct: 138 FIKKDTTSQTEDPYEILSKRELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLN 197

Query: 230 TKTRSGAIAYAVRNNIV 246
            K+R   + YA++  ++
Sbjct: 198 LKSRPELVQYALKKKML 214


>gi|289641922|ref|ZP_06474077.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508222|gb|EFD29166.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 459

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEI 206
             +  I+L     E+G +A+  A++F+           L T RE   +  +  G  + EI
Sbjct: 358 LAEDEILLARSDRELGAVASRAADLFRPVTAADDPVASLLTARERRIVELMVTGARNSEI 417

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           A  L +S +TV +++ S++RK  +  R+ A++  ++
Sbjct: 418 ADRLVLSEDTVKSHVRSVLRKLRSANRAEAVSRYLK 453


>gi|254563130|ref|YP_003070225.1| transcriptional regulator, PAS domain S-box [Methylobacterium
           extorquens DM4]
 gi|254270408|emb|CAX26408.1| putative transcriptional regulator, PAS domain S-box
           [Methylobacterium extorquens DM4]
          Length = 500

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I +G T  EIA  LG+S +TV N++AS+ RK     RS  + +A    
Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484

Query: 245 I 245
           I
Sbjct: 485 I 485


>gi|284041267|ref|YP_003391197.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283820560|gb|ADB42398.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 213

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 63/163 (38%), Gaps = 7/163 (4%)

Query: 87  VRCMALSEKDKYYNVLQRPTELF--CPVFHTLPENITP-PAGMDNRYCSLTFDVARIRIG 143
           V+   +   +    + QR  ++          PE I        + Y   + + + +   
Sbjct: 55  VQMPVMGGIELTIQLRQRFPQVKICLLTVADQPEAIKEAIRAGADGYVLKSAERSELETA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +    +      + ++      +       D+   +   ++ RE++ L  I++  + 
Sbjct: 115 LRTISKGNKFYSEQVMLQLANEVGIEVI----PDLDKPQKITISKRELDVLKLIAQEFSG 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS  TV  +   +M+K   +T  G + YA++ N+V
Sbjct: 171 TQIAEKLFISPTTVETHRKHLMQKLGVQTTIGLVKYAIKFNLV 213


>gi|163743438|ref|ZP_02150817.1| response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161383268|gb|EDQ07658.1| response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 265

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 19/130 (14%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKG-------RIILRDRLWEIGLLAAYQANMFKSYDVH 179
            +R+       AR R   +              +I+  R+ E+   A+  A      D  
Sbjct: 120 SDRFGGFNLGTARSRDSFIAHVTGKTDSLRFLCLIIHRRMEELRQTASSPAANPSEPDAE 179

Query: 180 WGKD------------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                             L+ RE E L   S+G TS E A +  IS +TV+ Y  SI RK
Sbjct: 180 GAGFDRPLIAPPPTALTRLSPREREVLYLFSQGLTSKECAAVCKISPHTVSEYANSIYRK 239

Query: 228 TATKTRSGAI 237
              + R  AI
Sbjct: 240 LNVRNRVEAI 249


>gi|17547031|ref|NP_520433.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17429332|emb|CAD16019.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 238

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 75/224 (33%), Gaps = 25/224 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS----IVSSDWPFDLVRCM 90
           R++  +        + ++   +G        +D+  E K       +  S  P  ++  +
Sbjct: 6   RLLIAEDHHLLRCGLRSMLSALG-------EYDVVGEAKDGREACQLAISLAPDLVLTDL 58

Query: 91  ALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGL 144
           ++   +       + +R  ++   V             +    + Y         +   L
Sbjct: 59  SMPGMNGIDMVATIKRRLPQIRVVVLTVYKSEEYVREALRVGVDGYVLKDASFEELVAAL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT 202
             +    R +  D      +      +    ++    K     LT RE   L  ++EG+T
Sbjct: 119 RAVMQGKRHLSAD------VYGNVVKSFVNGHEALAPKSTWETLTARERSVLQLVAEGRT 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++ + L +S  T+  Y A +M K      +G +  A+   ++
Sbjct: 173 NRQVGLYLNLSPKTIEKYRAHLMEKLGVGNVTGLVLAAIGLGLI 216


>gi|315185840|gb|EFU19605.1| transcriptional regulator, LuxR family [Spirochaeta thermophila DSM
           6578]
          Length = 709

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPA---GMDNRYCSLTFDVARIRIGLMLLFP 149
           + +  +   L+ P      V     E++         +    S  F +A     +  +  
Sbjct: 522 ARRLIHKKELESPLPFLTLVEDLDQEHVEEFLERIKAEREISSTQFRIATPEGVVYHVLA 581

Query: 150 KGRIILRDR----LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +G  I+R+     +  +GL      +     +  +   +  T RE E L    +G +  E
Sbjct: 582 QGGPIVREGRCGGVRVVGLEVEPFLSSIIMPEEVFFSHYHFTPREKEVLLLYIQGYSRKE 641

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTR 233
           IA  LGIS NTV  +++SI  +     R
Sbjct: 642 IAKRLGISENTVKVHLSSIYNEVGVSNR 669


>gi|294054984|ref|YP_003548642.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614317|gb|ADE54472.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 215

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E+ LL        KS +        LT RE + L  I+E  ++ EIA  L IS  T  N+
Sbjct: 128 EVALLLRDAMADPKSKESGINI---LTKRERQILQLIAESNSTREIASKLDISVKTAENH 184

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
             ++MRK      +    YA+ + ++
Sbjct: 185 RTNLMRKLDLHDVASLTRYAINHGLI 210


>gi|256838723|ref|ZP_05544233.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739642|gb|EEU52966.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 254

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 32/64 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE E L  I +G  S EIA  L +S  TVNN+  +I+ K        AI  A  
Sbjct: 190 DQQLTKREKEILLLIRQGFLSKEIAYKLNLSIYTVNNHRKNILAKLNVDNVIEAINRAES 249

Query: 243 NNIV 246
             I+
Sbjct: 250 FGIL 253


>gi|145559614|gb|ABP73639.1| SalRII [Salinispora tropica]
          Length = 225

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE E +  ++ G ++ +IA  L IS  TV  ++ +   K   ++R  A+       +
Sbjct: 152 LSGREFEVIELVAAGLSNAQIAGRLSISEGTVKRHLTNTYDKLDVRSRVAAVNRLAAMGL 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|312173141|emb|CBX81396.1| Nitrate/nitrite response regulator protein homolog [Erwinia
           amylovora ATCC BAA-2158]
          Length = 209

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  ++ G  + ++A  L IS  TV  +I +++RK   ++R  A  
Sbjct: 150 LTPREQEVLKEVASGLPNKQVAENLAISEQTVKVHIRNVLRKLNVRSRVAATV 202


>gi|289422732|ref|ZP_06424572.1| response regulator [Peptostreptococcus anaerobius 653-L]
 gi|289156911|gb|EFD05536.1| response regulator [Peptostreptococcus anaerobius 653-L]
          Length = 199

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+       LT +E E L  +++G ++ EIA I  +S  TV NYI+ I++K   + R+ A
Sbjct: 130 DIVINDHSPLTSQEEELLRKVAQGLSNKEIARISYLSDGTVRNYISIILQKLDAENRTDA 189

Query: 237 IAYAVRNNIV 246
           +  A   N +
Sbjct: 190 VRIAQEKNWI 199


>gi|119468892|ref|ZP_01611917.1| DNA-binding response regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
 gi|119447544|gb|EAW28811.1| DNA-binding response regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
          Length = 219

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 36/72 (50%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +Y        D    K   LT ++ + L  +++G  + +IA  L +S +T+ +++++I  
Sbjct: 131 SYALKQGAQQDKEESKISTLTNQQRKILFMLADGLLNKQIAYDLNLSESTIKSHVSTIFL 190

Query: 227 KTATKTRSGAIA 238
           K   K R+ A+ 
Sbjct: 191 KLGVKNRTQAVI 202


>gi|322614808|gb|EFY11737.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618915|gb|EFY15803.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623622|gb|EFY20461.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629079|gb|EFY25858.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631800|gb|EFY28554.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637463|gb|EFY34165.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642147|gb|EFY38757.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645829|gb|EFY42350.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649793|gb|EFY46218.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653193|gb|EFY49526.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660658|gb|EFY56894.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664810|gb|EFY61003.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668811|gb|EFY64963.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670683|gb|EFY66816.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679079|gb|EFY75134.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682106|gb|EFY78131.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685064|gb|EFY81061.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323193043|gb|EFZ78266.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196875|gb|EFZ82017.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203860|gb|EFZ88877.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207054|gb|EFZ92007.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209899|gb|EFZ94813.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214419|gb|EFZ99170.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220141|gb|EGA04605.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226305|gb|EGA10517.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230258|gb|EGA14378.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233996|gb|EGA18085.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238310|gb|EGA22368.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243997|gb|EGA28006.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246585|gb|EGA30559.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252172|gb|EGA36029.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257780|gb|EGA41459.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261204|gb|EGA44796.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264864|gb|EGA48363.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272428|gb|EGA55835.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 210

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    +     ++    AG       N + S  
Sbjct: 48  YPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKR 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+  I   + ++         + L        + +N       H   D  L+ REV  L
Sbjct: 108 KDLNDIYNAVKMILSGYSFFPSETL-------NFISNARPPKGGHH--DMPLSNREVTVL 158

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + ++
Sbjct: 159 RYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL 210


>gi|300771307|ref|ZP_07081183.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761977|gb|EFK58797.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 209

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T RE E L   ++G TS EIA +L IS +TV ++  +++ K   K  +  I  A+   
Sbjct: 146 KITRREKEILQEAAKGLTSTEIADVLFISSHTVESHRKNLIEKFKVKNIASVIGLALEYG 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|271965654|ref|YP_003339850.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270508829|gb|ACZ87107.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 963

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  G +  L+ R+ +     + G T+ EIA  + +S  TV+ ++ + MRK   ++R
Sbjct: 891 PPAPSRDGANDSLSARQQQVARLAAAGLTNQEIAREMFLSPKTVDKHLGAAMRKFGARSR 950

Query: 234 SGAIAY 239
           +    +
Sbjct: 951 TELARH 956


>gi|304392975|ref|ZP_07374906.1| glycerol metabolism activator [Ahrensia sp. R2A130]
 gi|303294973|gb|EFL89342.1| glycerol metabolism activator [Ahrensia sp. R2A130]
          Length = 279

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 76/210 (36%), Gaps = 17/210 (8%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
            L   +   M        + A +F  ++  L +E  +D ++           +A+     
Sbjct: 77  ALSSGLDLGMGTAGPVAILEAGNFRELQKLLSEETDIDLVLL---------DLAMPGVSG 127

Query: 98  YYNVLQ-RPTELFCPVF--HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
           +  ++  R      PV       +++T    +D          A +      +      +
Sbjct: 128 FSGLMTLRSEYAAIPVVIVSASDDSVTVARALDLGASGFVPKSAPME----TIREAITAV 183

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           +   +W+   L        +  D+   +   LT ++   L+ IS+G  + +IA  L +S 
Sbjct: 184 MEGDVWKPADLDLAAEGDPEIADL-MTRLQTLTPQQSRVLSMISQGLLNKQIAYELSVSE 242

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            TV  ++++++ K    +R+ A+    +  
Sbjct: 243 ATVKAHVSAVLSKLNVDSRTQAVIQISKLG 272


>gi|288918685|ref|ZP_06413032.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288349887|gb|EFC84117.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 855

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE +    ++ G ++ +IA  L IS  T   ++  I++K    +R+   A+
Sbjct: 790 VRLTRRERQVAQLVARGLSNRDIAATLVISPRTAETHVQQILKKLGLTSRAQVAAW 845


>gi|326317523|ref|YP_004235195.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323374359|gb|ADX46628.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 229

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             +M          D  LT R+ E L  + +G  +  IA  L +S +TV  ++ +I++K 
Sbjct: 150 AGSMAPREIRLAPADIGLTPRQGEILALVLDGMPNKPIASALHLSEHTVKEHLTAILQKL 209

Query: 229 ATKTRSGAIAY 239
             + R   IA 
Sbjct: 210 EARNRVELIAK 220


>gi|238653897|emb|CAV30841.1| Transcriptional Regulator, LuxR family [magnetite-containing
           magnetic vibrio]
          Length = 261

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 8/167 (4%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL-----TFDVAR 139
           D + C++ +E   +++   R  E   P    + E        +     L       D   
Sbjct: 96  DTLHCISSTEDQIFFSPETR--ENLTPEQKAIDEFAQRSGIKNGISFPLRAGPDINDWGG 153

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + +   +   +   +L +R   + L+A     + +S  +       LT +E + L+  ++
Sbjct: 154 LGLSTRMDDDEFSAVLDERRDYLRLIAQVFHAVTQSRPLAKNA-LLLTEKEKQALSLTAK 212

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + +IA  LG+S   V+ +IA    K A+ TR+ A+A A+R +I+
Sbjct: 213 GLKTKQIADKLGMSDKAVDQHIARATAKLASTTRTQAVAEAIRLHIL 259


>gi|222081078|ref|YP_002540441.1| two-component nodulation response regulator protein [Agrobacterium
           radiobacter K84]
 gi|221725757|gb|ACM28846.1| two-component nodulation response regulator protein [Agrobacterium
           radiobacter K84]
          Length = 784

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE + L  I+ G ++  IA  L IS  TV  ++ ++ RK     R+ A+  A    
Sbjct: 724 LSQREAQMLQLIAGGLSNKRIAQTLNISEVTVKFHLGNLFRKLGCNRRAEALRAATALG 782


>gi|160890178|ref|ZP_02071181.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492]
 gi|156860566|gb|EDO53997.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492]
          Length = 254

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +G+M + P    I  +R+    ++      M  +  V   K  +L+ RE E L  I +G 
Sbjct: 154 MGVMDILPDQTPI--ERIKRT-VVNRKTGEMLPTCTVSPDK--QLSNREKEILRLIRQGF 208

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            S EIA  LG+S  TVNN+  +I+ K        AI
Sbjct: 209 LSKEIAYQLGVSIYTVNNHRKNILSKLNANNIMEAI 244


>gi|126433529|ref|YP_001069220.1| response regulator receiver protein [Mycobacterium sp. JLS]
 gi|126233329|gb|ABN96729.1| response regulator receiver protein [Mycobacterium sp. JLS]
          Length = 880

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 2/117 (1%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           D  Y     D A        L  + +         +  LA               +   L
Sbjct: 747 DAGYLLSASDTAAQAAVFHDLAGRPQTGAHSAGRALK-LAVQCGGAVTPAIRSAARPLPL 805

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + RE E    ++EG T+ E+A  L +S  TV N+I     K   + R+   A AVR 
Sbjct: 806 SSREHEVAVLVAEGLTNREVADRLTVSVRTVENHIYRSCAKLDLRDRAELAA-AVRR 861


>gi|159185575|ref|NP_357562.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159140709|gb|AAK90347.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 747

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE + L  ++ G ++ +IA  L IS  TV  ++ ++ RK     RS AI  A
Sbjct: 687 LSQREAQMLQLLASGMSNKKIAQTLNISEVTVKFHLGNLFRKLDCNRRSEAIRAA 741


>gi|302038390|ref|YP_003798712.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300606454|emb|CBK42787.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 215

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 83/216 (38%), Gaps = 13/216 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++ +D   S+   +  + E  G     +      QE         + P+DLV  M +S 
Sbjct: 8   RILVVDDHPSFRRGVKDILEE-GFEGASMAECGNAQEMLDQ---VREQPYDLV-VMDISM 62

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
             +    + +  +   P+   L  ++ P    +++Y    F             P+  + 
Sbjct: 63  PGRSGPEVLKELKQLAPMLPVLILSMHP----EDQYAIRMFKAGAAGYLTKASAPEELVH 118

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKD----FELTGREVECLTWISEGKTSDEIAVIL 210
              ++   G   +       +  V  G D      L+ RE E L  I+ G+T  +IA  +
Sbjct: 119 AAKKVMAGGQYVSASVGEALALTVRTGVDKLAHERLSDREYEVLCLIASGQTVSDIAESI 178

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  T++ Y A I+ K   K  +    YA+++ +V
Sbjct: 179 HLSVTTISTYRARILDKMNLKNNAELTRYALQHGLV 214


>gi|260431508|ref|ZP_05785479.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415336|gb|EEX08595.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 239

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFP-----KGRIILRDRLWEIGLLAAYQANMFKSY 176
              G+ N+  S+       +  L          + +  +     ++ L+A Y       +
Sbjct: 106 LEHGVGNQGFSIPIRGPNGQFALFTANHSCSDAEWQNFIAKYGRDLILIAHYFNRKALEF 165

Query: 177 DVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + +   D    L+ RE++ +T ++ G +  ++A  L IS +T+  YI S   K      +
Sbjct: 166 EQNRRPDSPRALSPREIDAMTLLALGYSRAQVAHSLSISEHTLRVYIESARAKLGALNTT 225

Query: 235 GAIAYAVRNNIV 246
            AIA A+   ++
Sbjct: 226 HAIATALSRGLI 237


>gi|114763261|ref|ZP_01442685.1| putative transcriptional regulator protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114544059|gb|EAU47069.1| putative transcriptional regulator protein [Roseovarius sp.
           HTCC2601]
          Length = 241

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----------ELTGREVECLTWISE 199
               +LR  L +I   A Y    ++S       D           ELT ++   +  I  
Sbjct: 119 APAPMLRQALRDIASGATYVHPGYQSSAASSTGDVPFEALHPKLAELTPQQQRIMKLICA 178

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           GK + +IA  L ++  TV  +I +++R+   + R+ A  
Sbjct: 179 GKPNKQIAYELSLAEATVKAHITALLRRLGVQNRTQAAV 217


>gi|302519163|ref|ZP_07271505.1| two component transcriptional regulator [Streptomyces sp. SPB78]
 gi|302428058|gb|EFK99873.1| two component transcriptional regulator [Streptomyces sp. SPB78]
          Length = 235

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 6/132 (4%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +                L   V  +  G  LL P+    +  R+ E       +   
Sbjct: 101 FDAIMAGAAGYVLKQINGSDLLNAVRTVATGTSLLDPRMTSRVMARIREP------EPEK 154

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                   G+   L+ RE+E L  I  G T+ +IA  L ++  TV N ++SI+ K     
Sbjct: 155 PAPSRALPGELDRLSPRELEILDLIGLGLTNRQIAERLYLAEKTVKNRVSSILGKLGVGR 214

Query: 233 RSGAIAYAVRNN 244
           R  A   A R  
Sbjct: 215 RIQAAMIAERLR 226


>gi|256379005|ref|YP_003102665.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923308|gb|ACU38819.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ R++E LT +  G ++ +IA  L +S  TV +Y++ ++ K   + R+ A   A    +
Sbjct: 154 LSERDLEVLTRLGRGLSNADIARELFLSEATVKSYVSRMLVKIDCRNRTQAGVLAHEAGL 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|206970619|ref|ZP_03231571.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
 gi|206734255|gb|EDZ51425.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
          Length = 212

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 9/156 (5%)

Query: 87  VRCMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   ++  +    + +  +   L    F      +         Y     D  RIR  +
Sbjct: 56  VRMPNMNGVEATKLICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++  G+ +++D +     L   ++N+ +S +     D  L T RE+  +  I++G ++
Sbjct: 116 KGVY-NGQTVMQDVI-----LDKIKSNLMESKEEECKIDKSLFTERELSIIALIAKGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 170 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|152981542|ref|YP_001354963.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281619|gb|ABR90029.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 320

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE   L  I+ G +  E+A  L +S  T+  +I +I  K +  +R  A+  A 
Sbjct: 247 EQVALTKRESTILDLIARGDSYGEVARQLSLSVGTIQTHIKNIYDKLSVHSRGEAVYEAN 306

Query: 242 RNNIV 246
           R  ++
Sbjct: 307 RRGLL 311


>gi|134101534|ref|YP_001107195.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008185|ref|ZP_06566158.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914157|emb|CAM04270.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 237

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    + +G ++ EIA  L I+  TV N++ +I+ K   + R+ A A+A    +
Sbjct: 146 LSHREAEIAELLEQGLSNQEIARRLCIALATVKNHVHNILDKLGVRGRAEAAAWARVQRL 205


>gi|126650269|ref|ZP_01722497.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592919|gb|EAZ86901.1| two-component response regulator [Bacillus sp. B14905]
          Length = 208

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGI 212
           ++  L    LLAA   +  +          E  L+ +E E L  +++G T+  IA  +G+
Sbjct: 114 IQAALRGEILLAADFLDFVQQRSNLPNTQQEVLLSDKEQEILQLVAQGCTNKAIASAIGV 173

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ TV NY++ +  K   ++R+ A+  A
Sbjct: 174 TQRTVENYLSKLFVKLNVESRAEAVIVA 201


>gi|145593585|ref|YP_001157882.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
 gi|145302922|gb|ABP53504.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
          Length = 225

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE E +  ++ G ++ +IA  L IS  TV  ++ +   K   ++R  A+       +
Sbjct: 152 LSGREFEVIELVAAGLSNAQIAGRLSISEGTVKRHLTNTYDKLDVRSRVAAVNRLAAMGL 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|71282148|ref|YP_268761.1| LuxR family DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
 gi|71147888|gb|AAZ28361.1| DNA-binding response regulator, LuxR family [Colwellia
           psychrerythraea 34H]
          Length = 208

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D     D  LT RE E L  I++G  SD IA+ L +S+ T++++ A+I +K         
Sbjct: 139 DDSQKTDSLLTKREEEVLILIADGLGSDAIALRLDLSKRTIDSHRANIRKKLGLTNSVEL 198

Query: 237 IAYAVRNNIV 246
             YA+   ++
Sbjct: 199 TRYAIEQGLI 208


>gi|16077609|ref|NP_388423.1| two-component response regulator YdfH [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308372|ref|ZP_03590219.1| hypothetical protein Bsubs1_03053 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312693|ref|ZP_03594498.1| hypothetical protein BsubsN3_03024 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317617|ref|ZP_03598911.1| hypothetical protein BsubsJ_02988 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321893|ref|ZP_03603187.1| hypothetical protein BsubsS_03059 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314195|ref|YP_004206482.1| two-component response regulator YdfH [Bacillus subtilis BSn5]
 gi|68566110|sp|P96686|YDFI_BACSU RecName: Full=Transcriptional regulatory protein ydfI
 gi|1881349|dbj|BAA19376.1| ydfI [Bacillus subtilis]
 gi|2632842|emb|CAB12349.1| two-component response regulator [YdfH] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320020469|gb|ADV95455.1| two-component response regulator (YdfH) [Bacillus subtilis BSn5]
          Length = 213

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 1/101 (0%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L       I  + L +  +L   Q   F+        + +LT +EV  L  I++G  S  
Sbjct: 110 LFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRN-ETQLTEKEVIVLKAIAKGLKSKA 168

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  LG+S  TV + + SI  K    +R+ A+  A++  I+
Sbjct: 169 IAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGIL 209


>gi|94314741|ref|YP_587950.1| LuxR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358593|gb|ABF12681.1| Transcriptional regulator, LuxR family, ATP-dependent [Cupriavidus
           metallidurans CH34]
          Length = 914

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++ G  +  IA  + +S  T+ +++  I  K   ++R+ A+A      
Sbjct: 852 PLTTREQEVLQMLAAGHRNRVIAEKMFVSELTIKSHLRKINAKLGAQSRTEAVAIGRSLG 911

Query: 245 IV 246
           ++
Sbjct: 912 LL 913


>gi|302544316|ref|ZP_07296658.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461934|gb|EFL25027.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 268

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 49/142 (34%), Gaps = 11/142 (7%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--------DRLWEIGLL 165
              P         D    +L   V     G +L    G  I          + L   G L
Sbjct: 120 AHDPSCAIVILSADASDSALLAAVEAGACGYLLKSASGDEIASAIRSAAEGETLIPAGTL 179

Query: 166 AAYQANMF---KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
               +      +S     G+   LT RE E LT + +G  +  +A  L IS  TV  ++ 
Sbjct: 180 VEVLSRHRESARSTAEQTGRLESLTRREQEILTLMGQGLDNRAVAEQLSISYATVRTHVR 239

Query: 223 SIMRKTATKTRSGAIAYAVRNN 244
            I+ K   +++  A+A A    
Sbjct: 240 KILEKLEVRSQLEAVAKATEWG 261


>gi|295134050|ref|YP_003584726.1| two-component response regulator [Zunongwangia profunda SM-A87]
 gi|294982065|gb|ADF52530.1| two-component response regulator [Zunongwangia profunda SM-A87]
          Length = 214

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 40/70 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +     +  LT RE E L  I++  T+ EIA +L +S++T+ +Y  +++ K   +  +G 
Sbjct: 145 NSRKASEIRLTQREKEVLQLIAKEHTTQEIADMLFLSKHTIESYRKNLINKLEVRNLAGL 204

Query: 237 IAYAVRNNIV 246
             YA+ +N+V
Sbjct: 205 TRYAIEHNMV 214


>gi|238926539|ref|ZP_04658299.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
 gi|238885485|gb|EEQ49123.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
          Length = 209

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 12/176 (6%)

Query: 78  VSSDWPFDLV-RCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPA-GMDNRY 130
           + +  P DLV   +++        + +         +     H   E I          Y
Sbjct: 38  LLAQQPIDLVIMDISMPGMGGLACIREIRAHYPAVKILVLSMHEDEEYIYKAMQYGAMGY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T     +   L +L    R +  +    +  +         + +        LT RE
Sbjct: 98  LPKTSADNELFDALQVLSQGRRYLSPNAQQSLMDI-----MFRPAEEAADDPRSVLTARE 152

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E    +  G T  EIA  L +S  TV+ +   I  K     RS  +  A+RN ++
Sbjct: 153 REVFDELIHGYTITEIAEQLHLSVKTVDTHKKHIYEKLHCSRRSELVTLALRNGLL 208


>gi|85710358|ref|ZP_01041423.1| putative regulator in two-component regulatory system; LuxR family
           protein [Erythrobacter sp. NAP1]
 gi|85689068|gb|EAQ29072.1| putative regulator in two-component regulatory system; LuxR family
           protein [Erythrobacter sp. NAP1]
          Length = 211

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 16/181 (8%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-TLPENITPPAGMDNRYCS 132
           L   V+  WP   V  +  +        L+   E      H      ++    +   + +
Sbjct: 18  LSHAVAKVWPEAEV--VEANTAGAAKTELEGGAEALLLDLHMEDSNGLSVLMDLRQEFPA 75

Query: 133 LTFDV------ARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSY-----DVH 179
           L   +       R+      L     I     L E+   L A  + + +        D  
Sbjct: 76  LPIAIVSASEEPRVYAAAQQLGAAAFIPKSSGLDEMRDALSAVREGDAWFPENSVEEDDD 135

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   LT  +   L  + +G  + +IA  L +S  TV  +I +I RK     R+ A+  
Sbjct: 136 LARMASLTPAQRRILEAMRKGLLNKQIAYELDVSEATVKAHITAIFRKLGVNNRTQAVLV 195

Query: 240 A 240
           A
Sbjct: 196 A 196


>gi|260429733|ref|ZP_05783709.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260419216|gb|EEX12470.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 241

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 19/177 (10%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD I S + P  ++  + L +     +  QR           LP+             
Sbjct: 50  AALDLIESGELPDLVMFDLKLPDVCG-ISGFQRLR-------AALPDAPILVISSLTSVQ 101

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS----------YDVHWG 181
            +   +     G +      + +LR+ L EI     Y  + ++S          +D    
Sbjct: 102 VVQALMEEGAAGFLPKDASAQ-LLRNALQEIASGRKYVHSGYQSCPVAMVPEDRFDASHP 160

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           K  ELT ++   +  I  GK + +IA  L ++  TV  +I +++R+   + R+ A  
Sbjct: 161 KLAELTPQQKRIMKLICAGKPNKQIAYELSLAEATVKAHITALLRRLGVQNRTQAAV 217


>gi|254775035|ref|ZP_05216551.1| TPR repeat-containing protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 867

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              LA    +   + D    +    +GRE + +  ++ G ++ EIA  L IS  TV  ++
Sbjct: 785 AHALAGQCGSRTPALDAA-ARPLPFSGRERQIVNLVAAGLSNREIADRLVISVRTVEGHL 843

Query: 222 ASIMRKTATKTRSGAI 237
             +  K     R   I
Sbjct: 844 YRLFTKLGINNRDQLI 859


>gi|254429735|ref|ZP_05043442.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
 gi|196195904|gb|EDX90863.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
          Length = 848

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 134 TFDVARIRIGLM-LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            FD A    GLM  L+  G+++L D  +  GL  A       S  +    D  LT +E E
Sbjct: 740 VFDEAPGLAGLMNRLWSAGQLLLPD--FYTGLFPAVFNATPASDPLEVDPDSVLTPKENE 797

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +  G ++ +I+   G+S  T   ++ +I  K     R+ A+  A
Sbjct: 798 IFELLQSGMSNAQISECTGVSVTTTKWHLKNIYSKLGVSNRTEAVLRA 845


>gi|114769185|ref|ZP_01446811.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550102|gb|EAU52983.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
          Length = 205

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ RE++ L  +  G ++ EIA  L I   TV  ++ +I  K     R+ A  +A
Sbjct: 144 NVSAREMQTLEQLCIGLSNKEIARNLDIQEVTVKLHVKNIFSKLGVSNRTQAALFA 199


>gi|33867217|ref|NP_898775.1| putative response regulator (IpbT) [Rhodococcus erythropolis]
 gi|33669051|gb|AAP74045.1| putative response regulator (IpbT) [Rhodococcus erythropolis]
          Length = 209

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+     A    +
Sbjct: 148 LSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDAGL 207

Query: 246 V 246
           +
Sbjct: 208 L 208


>gi|117926978|ref|YP_867595.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117610734|gb|ABK46189.1| transcriptional regulator, LuxR family [Magnetococcus sp. MC-1]
          Length = 220

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +T RE E L  I+ G ++  IA  LGIS +TV  +  ++ RK     R  A  +A
Sbjct: 158 ITSREAEILRLITSGCSNKRIAYELGISLHTVKAHTYNLYRKIDASNRMDAANWA 212


>gi|326202031|ref|ZP_08191901.1| LOW QUALITY PROTEIN: transcriptional regulator, LuxR family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987826|gb|EGD48652.1| LOW QUALITY PROTEIN: transcriptional regulator, LuxR family
           [Clostridium papyrosolvens DSM 2782]
          Length = 266

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDFELT 187
            S+     +  +G + +  +   I ++    + LL+   +N F   K  + ++  D  LT
Sbjct: 141 LSVPIASKKENLGCISILSRENCINQEIALIVQLLSYKISNEFTKNKRINNNYLCDVRLT 200

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++  L  ++ G T    +  LGIS  TV  +  +I RK   ++   AI  A++  I+
Sbjct: 201 DSQIRVLKVLAWGCTDKCASAELGISLGTVRYHKTNIFRKLNVESSVQAIMKALKYGII 259


>gi|320450456|ref|YP_004202552.1| DNA-binding response regulator, LuxR family [Thermus scotoductus
           SA-01]
 gi|320150625|gb|ADW22003.1| DNA-binding response regulator, LuxR family [Thermus scotoductus
           SA-01]
          Length = 206

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + +    L    L  A      K  D+       LT RE E L  +++G +  E+A  L
Sbjct: 113 SKELSAPELKRRLLRVAQGEEKLKPPDLP-----SLTSREEEVLRLLAQGLSVKEMAKAL 167

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+S +TV +++ S+  K   + R  A+  A     +
Sbjct: 168 GLSPDTVKDHLESLYGKLLARNRVEALEKARSLGFL 203


>gi|302337582|ref|YP_003802788.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634767|gb|ADK80194.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 225

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 8/163 (4%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRY 130
           +V    P  ++  + +   D      +   E      +    F                Y
Sbjct: 45  VVRDTHPDIVLMDVRMPGMDGVEAARRLSAEFSDIKVVMLTTFDDDTYVREAMKYNAVGY 104

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   +  +     ++  D + +I  L   +     S D       + + RE
Sbjct: 105 LLKNIPPEDLIGSIRAVGSGNILLSPDVVGKI--LGREEHAPEPSPDAGDFTVGDFSRRE 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            E L +IS G  +  IA  L I+  TV N+I+ I  K  T+ R
Sbjct: 163 REVLYFISRGMDNTAIADRLFIAEQTVKNHISKIYAKLETRDR 205


>gi|300697826|ref|YP_003748487.1| LuxR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074550|emb|CBJ54101.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CFBP2957]
          Length = 88

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W     LT R+ + L   + GK++ EIA  L IS  TV  ++  I+ +   + R+   A 
Sbjct: 17  WPHHPMLTTRQQDILREAAYGKSNAEIAQALNISVETVKTHVRQILMRLEARNRTQLAAM 76


>gi|291003996|ref|ZP_06561969.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 755

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    +++G ++ EIA  L I++ TV+ ++  I  K    +R    A+  + N
Sbjct: 689 PLTRREREIAELVTQGLSNKEIASRLVIAKRTVDAHVEHIFTKLGLNSRIQVAAWMAQQN 748


>gi|291302996|ref|YP_003514274.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572216|gb|ADD45181.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 213

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ +  ++ G+T++EIA  L ++ +TV +++ S+  K   + R+    +A  N I
Sbjct: 152 LSERELDVVERVARGRTNNEIAEELFVAVSTVKSHLESVRAKINVRNRTEIAVWAWENKI 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|255039009|ref|YP_003089630.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
 gi|254951765|gb|ACT96465.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
          Length = 267

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              ++      + +          +LT RE E L  I +GK S EI+ +L IS +TVN +
Sbjct: 181 RSQVINFRTGELIQPVASRIDPGIKLTSREKEILGMIGKGKLSKEISALLDISVHTVNTH 240

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
              I+ K        A+  A    ++
Sbjct: 241 RQRILEKLHADNSIEALQSAKMIGLL 266


>gi|94495174|ref|ZP_01301755.1| regulatory protein, LuxR [Sphingomonas sp. SKA58]
 gi|94425440|gb|EAT10460.1| regulatory protein, LuxR [Sphingomonas sp. SKA58]
          Length = 893

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  REV+ LT +S G  + EI   LG++  TV  Y+  I  K   + R  A+  A +  I
Sbjct: 832 LANREVDILTMVSGGLRNREIGDRLGLTEGTVKWYMQQIYDKLGVRRRPQAVLRARQLGI 891

Query: 246 V 246
           +
Sbjct: 892 L 892


>gi|150389373|ref|YP_001319422.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949235|gb|ABR47763.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 212

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 16/177 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYY--NVLQRPTELFCPVFHTLPENITPPA----GMDNR 129
             VS   P  ++  + L + D       +++       +  T     +            
Sbjct: 45  HKVSDLKPDIVLLDIKLPDGDGAAGCREIKKRVPDVKVIILTAYAEDSIILEAVKAGAEG 104

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     D   I   +  +      +  + + ++                +   + +LT +
Sbjct: 105 YLLKDIDSKNIITAIRNVVGGKTSLANEAISKV----------LNEVKQNCSGEDDLTSQ 154

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   L  IS+GK++ +IA  + +S  TV N  + I +K     R+ A  Y  +  I+
Sbjct: 155 DKSILELISQGKSNKDIAKEIYVSEKTVRNNASRIFKKINAGNRTEAAIYWSKRKIL 211


>gi|317501835|ref|ZP_07960020.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896725|gb|EFV18811.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 199

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E +  I  GKT  EIA  L IS  T+ N+I SI  K   K    A   A+   
Sbjct: 134 PLTDREAEIIKAIGTGKTKHEIAQELYISERTLYNHIQSIYDKLGAKNAIEAYNKAIALG 193

Query: 245 IV 246
            +
Sbjct: 194 YI 195


>gi|144898190|emb|CAM75054.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 213

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 14/209 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL-VRCMALS 93
           R+I  D  V     +    E + A   ++     F E    + + +D   DL +  + + 
Sbjct: 2   RIILADDHVMLREGLRPFVERI-APGTIIQEAGSFTEAL--AQIEADPSVDLLILDIKMP 58

Query: 94  EKDKY---YNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRIGLMLL 147
             + +     +  R   + C +  ++ +       M    + +         +   L L+
Sbjct: 59  GMNGFQGLSTIKTRFPAIRCVILSSMADRDHVLEAMRLGADGFIPKHLSGGAMVSALQLV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R I    +       +  ++   S D+       LT RE + L  + EG  +  IA
Sbjct: 119 LSGERFIPSMLMDSANNQISGASDRSPSGDLLG----RLTPRERDILHLLREGLPNKVIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGA 236
             L +   TV +++ ++ RK   + R  A
Sbjct: 175 ARLDVREVTVKSHLGNMFRKLGVQNRLQA 203


>gi|302561339|ref|ZP_07313681.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302478957|gb|EFL42050.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             +    +   LT RE E L  + EG ++ +    L +S  TV  Y++ I+ K   + R 
Sbjct: 145 RGEEARRRLAGLTARESEVLALLGEGLSNADAGARLHMSEATVKTYVSRILTKLDCENRV 204

Query: 235 GAIAYAVRNNI 245
            A   A    +
Sbjct: 205 QAALLARDAGL 215


>gi|168231547|ref|ZP_02656605.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168240384|ref|ZP_02665316.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261008|ref|ZP_02682981.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168465653|ref|ZP_02699535.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194445419|ref|YP_002039793.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194448069|ref|YP_002044584.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471844|ref|ZP_03077828.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194734277|ref|YP_002113562.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|204930612|ref|ZP_03221542.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|238911321|ref|ZP_04655158.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|194404082|gb|ACF64304.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406373|gb|ACF66592.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458208|gb|EDX47047.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194709779|gb|ACF89000.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631799|gb|EDX50319.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|204320546|gb|EDZ05749.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205334067|gb|EDZ20831.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205340203|gb|EDZ26967.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205350008|gb|EDZ36639.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 210

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    +     ++    AG       N + S  
Sbjct: 48  YPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKR 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+  I   + ++         + L        + +N       H   D  L+ REV  L
Sbjct: 108 KDLNDIYNAVKMILSGYSFFPSETL-------NFISNTRPPKGGHH--DMPLSNREVTVL 158

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + ++
Sbjct: 159 RYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL 210


>gi|149914298|ref|ZP_01902829.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
 gi|149811817|gb|EDM71650.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
          Length = 223

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +    ++  LT RE   L   S+G T+ EIA  LGI+ + V   + ++  K   K R+ 
Sbjct: 153 VEPARPRNEALTHREKRILQLASDGGTNKEIAQELGITESQVKMVMRTLCAKLQAKNRTH 212

Query: 236 AIAYAVRNNIV 246
           A+  A R +++
Sbjct: 213 AVVRANRLDLI 223


>gi|83749754|ref|ZP_00946730.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|207723132|ref|YP_002253531.1| hypothetical protein RSMK00348 [Ralstonia solanacearum MolK2]
 gi|207743475|ref|YP_002259867.1| hypothetical protein RSIPO_01651 [Ralstonia solanacearum IPO1609]
 gi|83723574|gb|EAP70776.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|206588325|emb|CAQ35288.1| hypothetical protein RSMK00348 [Ralstonia solanacearum MolK2]
 gi|206594872|emb|CAQ61799.1| hypothetical protein RSIPO_01651 [Ralstonia solanacearum IPO1609]
          Length = 222

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 6/181 (3%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGM 126
            E   D+I +      LV  + L   D+   + +   RP      V             M
Sbjct: 35  DEAMFDAIEAHADAGLLVIGLPLPHLDELSAIGEIMHRPHARHVVVLAESESPDIIRTLM 94

Query: 127 DNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   L L+   G+ I    L     L                K 
Sbjct: 95  QMGLSGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGAPNPSLAGDPQTDPKL 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A + 
Sbjct: 155 LGITPRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQR 214

Query: 244 N 244
            
Sbjct: 215 G 215


>gi|113969001|ref|YP_732794.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|114048854|ref|YP_739404.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|117919108|ref|YP_868300.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|113883685|gb|ABI37737.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
 gi|113890296|gb|ABI44347.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
 gi|117611440|gb|ABK46894.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 209

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
           LT RE++ L  ++EG ++  I+  L IS  TV  ++ +++RK   K+R+  A+ Y
Sbjct: 152 LTPRELQILQQLAEGLSNRMISEHLHISEGTVKVHVKNLLRKANAKSRTEMAVRY 206


>gi|307315521|ref|ZP_07595072.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|306898775|gb|EFN29433.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 243

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 66/225 (29%), Gaps = 17/225 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L  +            +  L    G SH   +         L     + +P         
Sbjct: 11  LRTLQSAKHRGDLHPALDELCARYGLSHMTFLVVCSGGRSGLYPDYCTTYPGKWTEIYVD 70

Query: 93  SEKDKYYNVLQRPTELFCPV--------FHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                   V+      F PV                      D     LT  +   +   
Sbjct: 71  KRYFDIDPVIDVIRWGFLPVDWSSLDRRSAQAYRLFKEARSYDIGPHGLTIPIRGSKGER 130

Query: 145 MLLFPKGRIILRDR-------LWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLT 195
            L      +  RD        + E+ +L+ Y      S       G+   L+ RE +CL 
Sbjct: 131 CLFSVSSNLPKRDWSRLRASSIHELQILSHYLHETTLSASGLREVGRYRTLSRRETQCLQ 190

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ G+ S +IA  LGIS N V  Y+ S   K    T   A+A A
Sbjct: 191 LLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKA 235


>gi|126735912|ref|ZP_01751656.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. CCS2]
 gi|126714469|gb|EBA11336.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. CCS2]
          Length = 210

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 16/163 (9%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAG-MDNRYCSLTFDVARIRIG 143
           +    LS       +L++  +    +   H  PE I+         Y         I   
Sbjct: 56  LNMPGLSGLAATEMILEKQPDTRIVILSMHDSPEYISTALSHGARGYILKDVPTEEIHTA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  +       +               +  G++  LT RE   L  +++G+++
Sbjct: 116 IETVMGGGEYLCTGAKGSL------------QPKISDGRET-LTSREQTILLELAQGQSN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 163 KDVANTLNISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 205


>gi|16759521|ref|NP_455138.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142706|ref|NP_806048.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052771|ref|ZP_03345649.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425256|ref|ZP_03358006.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582337|ref|ZP_03364163.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213622215|ref|ZP_03374998.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647052|ref|ZP_03377105.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865277|ref|ZP_03387396.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289823975|ref|ZP_06543574.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25298756|pir||AE0570 probable transcription regulator (FimXZ protein) fimZ [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501813|emb|CAD05031.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138337|gb|AAO69908.1| probable transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 210

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    +     ++    AG       N + S  
Sbjct: 48  YPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKR 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+  I   + ++         + L        + +N       H   D  L+ REV  L
Sbjct: 108 KDLNDIYNAVKIILSGYSFFPSETL-------NFISNTRPPKGGHH--DMPLSNREVTVL 158

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + ++
Sbjct: 159 RYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL 210


>gi|284989383|ref|YP_003407937.1| LuxR family transcriptional regulator [Geodermatophilus obscurus
           DSM 43160]
 gi|284062628|gb|ADB73566.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus
           DSM 43160]
          Length = 755

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 37/102 (36%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R  L       R      L     +A        +          LT R+ E    +
Sbjct: 647 GRARRALGEQRWGARYAEGSALERAAAVALALGEEPAAGTPAPSGAGPLTRRQREVADLV 706

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G T  EIA  L IS  T  +++  I+ +   ++R+   A+
Sbjct: 707 AQGMTDREIAARLVISPRTAESHVEQILTRLGFRSRAQIAAW 748


>gi|134101531|ref|YP_001107192.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291008188|ref|ZP_06566161.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914154|emb|CAM04267.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 239

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 11/119 (9%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           DN    L   +     G +   P+   +L  R+ E+                  G D  L
Sbjct: 111 DNSVAELVSAIDSAAKGEVRCSPRIAAVLSRRVAELA-----------GELQPAGSDHGL 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + REVE    I +G ++ EIA  L I+  TV N++ +I+ K     R+ A A+  R  +
Sbjct: 160 SRREVEIAVLIEQGLSNQEIAHRLCIALATVKNHVHNILEKLGLHARADAAAWTRRQRL 218


>gi|56420621|ref|YP_147939.1| two component response regulator [Geobacillus kaustophilus HTA426]
 gi|261420284|ref|YP_003253966.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297529750|ref|YP_003671025.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319767094|ref|YP_004132595.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|56380463|dbj|BAD76371.1| two component response regulator [Geobacillus kaustophilus HTA426]
 gi|261376741|gb|ACX79484.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|297253002|gb|ADI26448.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
 gi|317111960|gb|ADU94452.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 209

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +       LT RE E +     G T+++IA  L IS  TV ++ A+IM+K   K +   I
Sbjct: 138 MEKEPRSPLTNREREIVRLTFLGYTNNQIANKLKISPKTVESHKANIMQKLGIKEKHELI 197

Query: 238 AYAVRNNI 245
            YA++N I
Sbjct: 198 QYALKNQI 205


>gi|213966347|ref|ZP_03394528.1| regulatory protein, LuxR:Response regulator receiver
           [Corynebacterium amycolatum SK46]
 gi|213950996|gb|EEB62397.1| regulatory protein, LuxR:Response regulator receiver
           [Corynebacterium amycolatum SK46]
          Length = 217

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 18/166 (10%)

Query: 86  LVRCMALSEKDKYYNVLQR-------PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           ++  + +   D    +L+R       P  +    F T    +   +   N Y   T    
Sbjct: 53  VLTDIHMPNMDG-VELLERIKKVENPPKFIAITSFDTDETMLKILSLGGNGYILKTARPE 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +F  G +I                 + K+        +++T  E E L  I 
Sbjct: 112 SVIGTIEDVFQGGTVISP----------ISATRLIKTLPSRNISSYKITQAEREVLGLIC 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            GK++ +IA  LG S  T+  +++S+  K    +R      A+   
Sbjct: 162 RGKSNHDIAKELGKSPGTIKKHLSSMFNKFGATSRLDLALKAIDAG 207


>gi|212636693|ref|YP_002313218.1| regulatory protein LuxR:response regulator receiver [Shewanella
           piezotolerans WP3]
 gi|212558177|gb|ACJ30631.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella
           piezotolerans WP3]
          Length = 209

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
            LT RE+E L  ++EG+++  +A  L IS  TV  ++ +++RK   K+R+  A+ Y
Sbjct: 151 NLTPRELEILQHLAEGQSNRVVAEQLHISEGTVKVHVKNLLRKANAKSRTEMAVRY 206


>gi|209863937|gb|ACI88882.1| AlnR5 two component response regulator [Streptomyces sp. CM020]
          Length = 201

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G   +LT REV+ L   + G+    IA  L +S  TV NY+ +I+ K   + R  A+  A
Sbjct: 136 GPAQQLTPREVDVLRLAAAGEDVRVIAKELHLSIGTVRNYLTTIVHKLGARNRVDAVRIA 195

Query: 241 VRNNIV 246
             N ++
Sbjct: 196 RDNGVI 201


>gi|149278022|ref|ZP_01884161.1| transcriptional regulator, LuxR family protein [Pedobacter sp.
           BAL39]
 gi|149231220|gb|EDM36600.1| transcriptional regulator, LuxR family protein [Pedobacter sp.
           BAL39]
          Length = 210

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 21/219 (9%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           AR++ ++   +       L ++  A  + +V      +     IV  D P  ++  + + 
Sbjct: 7   ARIVIIEDDQTIREGYAYLIDHTSA--YTVVNTYPSFDAARSRIV-KDQPDVILLDIQMP 63

Query: 94  EKDKYYNV------LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +    +      + +   +   V+ T    +   A   + Y +     A++   +  +
Sbjct: 64  GTNGIDALPVLKKMIPQVYIIMLTVYETEKAILDALANGASGYFTKNTPTAKLIEAIKDV 123

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +  D    + +             +   +D  LT RE + L  I+ GK   +IA
Sbjct: 124 MEGGGPMSPDVARTVIM------------SLQRNQDSPLTKRETQILELITTGKDRGQIA 171

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L I   TV  +  +I  K    T++ AI  A    +V
Sbjct: 172 KELFIEVETVKTHTKNIYAKLNVNTKAEAIQVAKDKRLV 210


>gi|315180008|gb|ADT86922.1| transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 212

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA 
Sbjct: 147 KPNPLSRREEAVLKLVAQGHSSKKIASLLNISYRTVETHRQNIKHKLDIHSTAELAHYAS 206

Query: 242 RNNIV 246
           +  ++
Sbjct: 207 QRGLL 211


>gi|260199910|ref|ZP_05767401.1| putative transcriptional regulatory protein [Mycobacterium
           tuberculosis T46]
 gi|289442302|ref|ZP_06432046.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           T46]
 gi|289415221|gb|EFD12461.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis
           T46]
          Length = 882

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E + +  +SE  ++ +IA  L +S  TV  ++  +  K    +R   +  A R  
Sbjct: 821 LTPTERDVVRLVSERLSNKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRG 879


>gi|302549213|ref|ZP_07301555.1| two-component system regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302466831|gb|EFL29924.1| two-component system regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 219

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 44/135 (32%), Gaps = 12/135 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L          D     L   V     G  LL P              L+  Y   
Sbjct: 92  VFEALRAGAAGFLVKDIVPEDLLHAVRVAARGEALLAPSITR---------KLIHRYVTQ 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +         ELT RE E +   + G ++D+IA  + IS  T   +I   M K    
Sbjct: 143 PPPTTSAALE---ELTSREREAVALAARGLSNDQIAGHMVISPMTAKTHINRAMTKLHAH 199

Query: 232 TRSGAIAYAVRNNIV 246
            R+  +  A  + +V
Sbjct: 200 DRAQLVVLAYESGLV 214


>gi|302538489|ref|ZP_07290831.1| two component system response regulator [Streptomyces sp. C]
 gi|302447384|gb|EFL19200.1| two component system response regulator [Streptomyces sp. C]
          Length = 226

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE + L  + +G ++ EIA  LGI   TV  ++ +I+ KT + +R  A   A R  +
Sbjct: 165 LTGRERDVLAALGDGLSNQEIAARLGIGTGTVKTHVGAILDKTGSASRVQAALLAHRTGL 224


>gi|254703683|ref|ZP_05165511.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 3 str. 686]
 gi|261754322|ref|ZP_05998031.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261744075|gb|EEY32001.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 213

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+    R  
Sbjct: 149 LTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIG 207


>gi|171911323|ref|ZP_02926793.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 242

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 70/222 (31%), Gaps = 17/222 (7%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  M AL    G +             +L ++  SD P  L+  + L        +
Sbjct: 21  KTYGERLMRALNRLDGITCGQRFTAVEDAVARLQAVGGSDPPAVLLLDVELPGMSGIEGI 80

Query: 102 LQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +   VF    +           Y   T  V  I   +      G  I 
Sbjct: 81  ASLKAHAPNLAIVILTVFEDDDKIFRAICAGAAGYLLKTAGVEDIAGAIRTAASGGSPIN 140

Query: 156 RDRLWEI-----GLLAAYQANMFKSYDVHWGKD------FELTGREVECLTWISEGKTSD 204
                 +      + A    +   +       +      + LT RE++ L  + +G T  
Sbjct: 141 PAIARRVLEMFSKVNAGRAGDQGNTVGSEGAVNRGGQVSYGLTPRELQILELLVQGHTIK 200

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + A  +GI   T + YI S+  K   ++R GAIA AV+  +V
Sbjct: 201 QAAGEMGIGYYTADEYIRSVYEKLQVRSRGGAIAKAVKERLV 242


>gi|134102177|ref|YP_001107838.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291007515|ref|ZP_06565488.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914800|emb|CAM04913.1| protein kinase/transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 786

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             +A   +  +VH      LT RE E    +++G+T+ EIA  L I++ TV  ++ +I+ 
Sbjct: 703 HARATTARRDNVH---PMPLTRREREIAELVAQGRTNKEIAEGLVIAQRTVEGHVQNILT 759

Query: 227 KTATKTRSGAIAY 239
           K    +R+    +
Sbjct: 760 KLDFTSRAQIAGW 772


>gi|302542477|ref|ZP_07294819.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460095|gb|EFL23188.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 8/168 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRYCSLTFDV 137
           P  ++  + +   D      Q   E    V      ++              +     D 
Sbjct: 61  PDVVLMDVQMPRLDGVSATRQVVAEGLADVLVLTTFDLDEYVFGALRAGAAGFLLKDSDA 120

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           AR+   +  +     +I       +    A       +          LT RE E L  +
Sbjct: 121 ARLVEAVRTVARGEGLIAPAVTRRLIKEFARSGTATTADPSVLAV---LTPREREVLGCL 177

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G ++ EIA  L ++  TV  +++ ++ K   ++R  A   A    +
Sbjct: 178 GRGMSNAEIATHLTMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGV 225


>gi|269126066|ref|YP_003299436.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268311024|gb|ACY97398.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 886

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE E    I+ G ++  IA  L IS  TV  ++A+I+ K    +R+    +AV
Sbjct: 812 LTPREREIARLIARGLSNRGIADELVISPATVARHVANILAKLGFGSRAQIAVWAV 867


>gi|218671400|ref|ZP_03521070.1| two-component response regulator protein [Rhizobium etli GR56]
          Length = 223

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +      V  G D  LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K   
Sbjct: 136 DALMGERVEEGSD-PLTPRERDTLGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGI 194

Query: 231 KTRSGAIAYAVRNNI 245
            T +G I YA+ + I
Sbjct: 195 ATTAGLIRYALDHGI 209


>gi|207739523|ref|YP_002257916.1| hypothetical protein RSIPO_04224 [Ralstonia solanacearum IPO1609]
 gi|206592902|emb|CAQ59808.1| hypothetical protein RSIPO_04224 [Ralstonia solanacearum IPO1609]
          Length = 74

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + W     LT R+ + L   + GK++ EIA  L IS  TV  ++  I+ +   + R+   
Sbjct: 1   MAWPHHPMLTTRQQDILRETAYGKSNAEIAQALNISVETVKTHVRQILMRLEARNRTQLA 60

Query: 238 AY 239
           A 
Sbjct: 61  AM 62


>gi|39996395|ref|NP_952346.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983275|gb|AAR34669.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
          Length = 216

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 7/170 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D     +  +  + +        R   +     H+    I        +   L  
Sbjct: 50  DIVLMDLTMPEMNGIDATRRIAADYPSVR---VLALSMHSDRRFIEEALSAGAQGFLLKD 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                 +  +      R  L  R+  + ++  Y     +           LT RE E L 
Sbjct: 107 CAFDELVNAIHEVVADRFYLSPRITGV-VIKDYLGRRGRP---ESASSIRLTPREREVLQ 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I+EGK + E+A  L +S  TV +    IMRK  T + +    +A+R  +
Sbjct: 163 LIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSIADLTKFAIREGL 212


>gi|308070133|ref|YP_003871738.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305859412|gb|ADM71200.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa
           E681]
          Length = 216

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 17/137 (12%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           FH L    +     +     L   +  I  G   + PK              +A      
Sbjct: 92  FHILKNGASGYVLKNAPDEELLLAIRTIHGGGTYIHPK--------------MATSLVRE 137

Query: 173 FKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           F   D     +     L+ RE+E L  +++G  + E+A  L IS  TV    A IM K  
Sbjct: 138 FIKKDTTSQSEDPYEILSKRELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLN 197

Query: 230 TKTRSGAIAYAVRNNIV 246
            ++R   + YA++  ++
Sbjct: 198 LRSRPELVQYALKKKML 214


>gi|149370972|ref|ZP_01890567.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149355758|gb|EDM44316.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 400

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +D+ L+ R+ + +  + +GKT+ EI   L IS NTV  ++  I        R+  
Sbjct: 346 EDYNLSERQNQIIVLVKQGKTNKEIGAALFISENTVKYHLKIIYDILGIGNRTEL 400


>gi|153835526|ref|ZP_01988193.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
 gi|148867896|gb|EDL67113.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
          Length = 212

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA 
Sbjct: 147 KPNPLSRREEAVLKLVAQGHSSKKIATLLDISYRTVETHRHNIKHKLDLHSTAELAKYAF 206

Query: 242 RNNI 245
              +
Sbjct: 207 ETGL 210


>gi|262279135|ref|ZP_06056920.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259486|gb|EEY78219.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 239

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 37/78 (47%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            E  +L+  +    ++  V     + LT RE E +  +S+G +   +A +LGIS  T+  
Sbjct: 157 REKRILSLLEPYFTQALPVDLSTQYGLTPREQEVVRLVSKGLSDKHVANLLGISFTTLRT 216

Query: 220 YIASIMRKTATKTRSGAI 237
           ++ + MRK     R+   
Sbjct: 217 HLNNAMRKIGCNNRTEMA 234


>gi|163740011|ref|ZP_02147416.1| two component transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis BS107]
 gi|163743180|ref|ZP_02150562.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161383597|gb|EDQ07984.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386756|gb|EDQ11120.1| two component transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis BS107]
          Length = 204

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  +  G ++ EIA  L +   T+  ++ ++ RK   K R+ A   A    
Sbjct: 143 KLSPREIEVLNGLCRGLSNKEIARELELQEVTIKLHVRTLCRKLEAKNRTQAALTAKEAG 202

Query: 245 I 245
           +
Sbjct: 203 L 203


>gi|153007753|ref|YP_001368968.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559641|gb|ABS13139.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 214

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    R +L   +W    +           +    +   LT ++   LT ++EG  + +I
Sbjct: 111 IGEAVRAVLAGDIWTPADIELDH-PHDPEIEALIARLRTLTPQQTRVLTMLAEGLLNKQI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  LG+S  TV  +++++++K    +R+ A+    R  
Sbjct: 170 AYELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIG 207


>gi|41407972|ref|NP_960808.1| hypothetical protein MAP1874c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396326|gb|AAS04191.1| hypothetical protein MAP_1874c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 854

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              LA    +   + D    +    +GRE + +  ++ G ++ EIA  L IS  TV  ++
Sbjct: 772 AHALAGQCGSRTPALDAA-ARPLPFSGRERQIVNLVAAGLSNREIADRLVISVRTVEGHL 830

Query: 222 ASIMRKTATKTRSGAI 237
             +  K     R   I
Sbjct: 831 YRLFTKLGINNRDQLI 846


>gi|6094276|sp|P56644|SGAR_HYPME RecName: Full=Probable transcriptional regulatory protein sgaR
          Length = 211

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  ++ G T+ +IA   GISRNTV  ++ ++  K     R+ A+A
Sbjct: 148 LTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVA 200


>gi|294791142|ref|ZP_06756299.1| putative two-component system response regulator [Scardovia
           inopinata F0304]
 gi|294457613|gb|EFG25967.1| putative two-component system response regulator [Scardovia
           inopinata F0304]
          Length = 214

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I +G T+ E+A  L I+  +   Y++ IM K    +R+  + +A  N +
Sbjct: 154 LTKREKETLILIGKGMTNAELAQELFITETSARTYVSRIMAKLNISSRAQLVIFAYENGL 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|240173027|ref|ZP_04751685.1| regulatory protein, LuxR [Mycobacterium kansasii ATCC 12478]
          Length = 1097

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E + +  +++G  ++EIA  L ISR TV  ++  +  K    +R           
Sbjct: 1039 LTPTERDVVRLVADGLANNEIAARLFISRRTVQTHLTHVYAKLGINSRVQLAHEGASRG 1097


>gi|169828201|ref|YP_001698359.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992689|gb|ACA40229.1| comA, srfB, comAA; two-component response regulator. potential
           cognate sensor kinase is comP [Lysinibacillus sphaericus
           C3-41]
          Length = 208

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++  L    LLAA   +  +      +  ++  L+ +E E L  +++G T+  IA  +G+
Sbjct: 114 IQAALRGEILLAADFLDFVQQRSNLPNSRQEVLLSDKEQEILQLVAQGCTNKAIASAIGV 173

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ TV NY++ +  K   ++R+ A+  A
Sbjct: 174 TQRTVENYLSKLFVKLNVESRAEAVIVA 201


>gi|111017809|ref|YP_700781.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
           jostii RHA1]
 gi|110817339|gb|ABG92623.1| possible protein kinase/ transcriptional regulator, LuxR family
           protein [Rhodococcus jostii RHA1]
          Length = 773

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 17/176 (9%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVF--HTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +++ + L+             E+   V      P       G            + +   
Sbjct: 594 VMQGLQLARSVDDRTGGAGCIEVLSWVAVDEGAPRRAATLMGAAEALARAGCSPSILYPR 653

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---------------KDFELTG 188
           L++   +     R  + +    A +   +   ++   G                   LT 
Sbjct: 654 LLVHHARCEEKARGAIGDRAFEAEFGRGLGMRFEEAAGYALDESGPTAAAVGPGSTPLTR 713

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE +    ++EG T+  IA  L IS+ T   ++  I+ K    +R+   A+ + + 
Sbjct: 714 RERQVAELVAEGLTNRAIADKLVISQRTAQGHVEHILSKLGFTSRTQIAAWVIEHR 769


>gi|89096396|ref|ZP_01169289.1| YocG [Bacillus sp. NRRL B-14911]
 gi|89089250|gb|EAR68358.1| YocG [Bacillus sp. NRRL B-14911]
          Length = 198

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++A  +    +  D  + ++  LT RE   L  +++GK ++EIA  L I   TV NY++
Sbjct: 114 SVMAGRRIYAPELMDDMYAEENPLTEREKAVLELVADGKNTNEIAAELSIKSGTVRNYVS 173

Query: 223 SIMRKTATKTRSGAIAYAVRNN 244
           +I+ K   + R  AI  +    
Sbjct: 174 AILEKLEVQNRIEAITRSREKG 195


>gi|94313637|ref|YP_586846.1| Two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357489|gb|ABF11577.1| Two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 264

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  ++EG+++ ++ + + +S  T+  Y AS+MRK      +  +  A+   +
Sbjct: 156 LTARERSVLKLVAEGRSNRQVGIYMNLSPKTIEKYRASLMRKLGITNLTELVLIAISMGL 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|310640465|ref|YP_003945223.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245415|gb|ADO54982.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 589

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 16/167 (9%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVL----QRP--TELFCPVFHTLPENITPPAGMDNRYCSL 133
           SD P  ++  + + + D            P    +    F  +       A     Y   
Sbjct: 425 SDPPDVVLMDVHMPQMDGITATKLIKESWPNIRVIMITTFDDISYATKSLALGAEGYVLK 484

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           T D   +   + L+   G +I ++              +F+         + LT RE+E 
Sbjct: 485 TIDPRELANTIRLVHHGGTMITQE----------VAGTLFQQMTGTMKNPYGLTERELEI 534

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L  ++EG     IA  + +S  TV NYI++I  K   ++R  AI  A
Sbjct: 535 LHCLTEGHRYKAIASKVHLSEGTVRNYISTIYSKMQVQSRDEAIEKA 581


>gi|297162432|gb|ADI12144.1| protein kinase [Streptomyces bingchenggensis BCW-1]
          Length = 762

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           ++  L  A Q ++        G+    LT RE E    ++ G ++ EIA  L I++ T  
Sbjct: 668 YDEALTYALQDHLPTRAPAGEGEQPSPLTPRETEIARLVARGLSNKEIAAALVIAQRTAE 727

Query: 219 NYIASIMRKTATKTRSGAIAY 239
            +I  I+ K    +R+    +
Sbjct: 728 GHIERILSKLGFNSRAQVAVW 748


>gi|297156374|gb|ADI06086.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 11/201 (5%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           L   +G++  + V  +          V    P  ++  + +   D     ++R  E   P
Sbjct: 20  LRTILGSAEDIEVVAEAHDGAAGAEAVRRHRPDVVLMDLRMPGVDG-LTAIERIREFADP 78

Query: 112 -------VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
                   F      +         +   T     +   + +      ++          
Sbjct: 79  PVIVVLTTFDADQYVLRALRAGATGFLIKTTPPEDLIGLVRVAAEGHTVLSPAAARR--- 135

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L A  ++   + D        LT RE E L  + EG ++ +I   L +S  T+  Y++ +
Sbjct: 136 LVAASSDGHSARDRARRLVESLTEREAEVLAGLGEGLSNAQIGARLYLSEATIKGYVSRL 195

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           + K     R+ A   A    +
Sbjct: 196 LDKLGCVNRTQAGLIAHEAGV 216


>gi|256786272|ref|ZP_05524703.1| response regulator [Streptomyces lividans TK24]
 gi|289770163|ref|ZP_06529541.1| response regulator [Streptomyces lividans TK24]
 gi|289700362|gb|EFD67791.1| response regulator [Streptomyces lividans TK24]
          Length = 233

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 2/110 (1%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             R+   ++        +  D L    L++        +          L  REV+ L  
Sbjct: 126 AHRLVQAVLAASRGDGDLPADLLGR--LISQVGTLHRGAAGRPGAPSLGLAPREVDVLRL 183

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG  + EIA  L  S  TV N +  +  +   + R+ A+AYA+R   +
Sbjct: 184 VAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALREGYI 233


>gi|218258057|ref|ZP_03474484.1| hypothetical protein PRABACTJOHN_00137 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225776|gb|EEC98426.1| hypothetical protein PRABACTJOHN_00137 [Parabacteroides johnsonii
           DSM 18315]
          Length = 202

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 4/120 (3%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           + +  +L + VA   +              D +         + +     +V   +   L
Sbjct: 80  EMKCIALLYAVADHALLRPYDDQISIYDSPDEIRHK----LERLHTPPEEEVENEEQQTL 135

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N +V
Sbjct: 136 SAREKEIVVCVVKGMTNREIADRLFLSTHTVVTHRRNIARKLQVHSASGLTVYAIVNKLV 195


>gi|163853742|ref|YP_001641785.1| regulatory protein LuxR [Methylobacterium extorquens PA1]
 gi|163665347|gb|ABY32714.1| regulatory protein LuxR [Methylobacterium extorquens PA1]
          Length = 216

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 21/182 (11%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +V      +L+  +    K     V  R      P +      +   AG       +   
Sbjct: 30  VVDVSNSSELINSLRSPLKTDLVIVGSRLLPAGDPTYLGA---LKRAAGTARLLLVVPHA 86

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEI----------GLLAAYQANMFKSYDVHWG----- 181
            A +    + L   G I+ R R  E+           L A       K  D   G     
Sbjct: 87  SADLFQDALSLGFHGLIVRRQRHEEMLEAVRTTLDGRLYAPTTILAVKPPDAGAGLRQPE 146

Query: 182 ---KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              + F LT R+ E L  I +G ++ EIA+ L I+  TV  ++++++R    + R+ A  
Sbjct: 147 RSVRTFGLTLRQREVLALIGKGLSNREIAIALSIAEATVKIHVSAVIRMLGVRNRTEAAL 206

Query: 239 YA 240
            A
Sbjct: 207 LA 208


>gi|254285696|ref|ZP_04960659.1| nitrate/nitrite response regulator NarP [Vibrio cholerae AM-19226]
 gi|150424193|gb|EDN16131.1| nitrate/nitrite response regulator NarP [Vibrio cholerae AM-19226]
          Length = 208

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L+  +      +        + +        LT RE++ ++ +++G  + +IA  L I
Sbjct: 114 ALLKQAMQGEKAFSESVERYLLNREHMSNPFEALTEREMQIMSEVAKGYRNRQIADRLFI 173

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIA 238
           S +TV  ++ S+++K    +R+ A  
Sbjct: 174 SESTVKVHMKSLLKKLDVPSRTAATI 199


>gi|149200778|ref|ZP_01877753.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
 gi|149145111|gb|EDM33137.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
          Length = 202

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 35/68 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G + +LT +E+  L   ++G T+ EIA  +G +  T+  ++ SI +K   + R+ A  
Sbjct: 135 KAGPEHDLTEKELFVLRLAADGLTNKEIARDMGTNEVTIKMHMRSICKKLNARNRAHAAM 194

Query: 239 YAVRNNIV 246
            +    ++
Sbjct: 195 ISRERALI 202


>gi|52143628|ref|YP_083200.1| response regulator [Bacillus cereus E33L]
 gi|51977097|gb|AAU18647.1| response regulator [Bacillus cereus E33L]
          Length = 212

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 9/156 (5%)

Query: 87  VRCMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR   ++  +    + +  +   L    F      +         Y     D  RIR  +
Sbjct: 56  VRMPNMNGVEATKLICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I        N+  S +     D  L T RE+  +  I++G ++
Sbjct: 116 KGVYNSQTVMQDVVLDKIK------CNLMGSKEDECKIDTSLFTERELSIIALIAKGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 170 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|320531246|ref|ZP_08032226.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136537|gb|EFW28505.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 241

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           T  + +       + +   +     I   +  +    +++          L  Y     +
Sbjct: 94  TDEDLLQGLGAGASGFLLKSAPAEEIIAAVRTVHSGAKVVAPT---PTTRLIDYALASVR 150

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D        L+ RE + L  + EG ++ +IA +L I+  TV ++I  +  KT T +R 
Sbjct: 151 GAD----GSVHLSERERDVLHLLCEGASNRKIASLLAIAEATVKSHITGLFHKTGTASRL 206

Query: 235 GAIAYAVRNN 244
             + +A ++ 
Sbjct: 207 EIVVWAFKHG 216


>gi|317497971|ref|ZP_07956276.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894724|gb|EFV16901.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 212

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   S  +      ELT +E+E L ++ EG    EIA  + IS+ TV  +I++I+ KT  
Sbjct: 128 DKTPSVKLGLADSSELTAKEIEVLRFVCEGLEYSEIAERMHISQRTVKFHISNILSKTGY 187

Query: 231 KTRSG-AIAYAVRNNIV 246
             ++  AIA   +N I+
Sbjct: 188 ANKTRLAIAVTNKNFII 204


>gi|325105483|ref|YP_004275137.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
 gi|324974331|gb|ADY53315.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
          Length = 219

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +S  ++  +++ +   + C          +        Y S T    +I   +  L   
Sbjct: 74  GISLIEQLKSLVPKTQFMVCSSLEDSNHIFSALKAGATGYISKTTSSEKIIQAISELHLG 133

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  +         ++A++Q +     D       +LT RE E L ++S G    EI   L
Sbjct: 134 GSPMSSQ--IARKVVASFQEHKVIKNDS----CKDLTNREFEILEFLSRGYRYKEIGDKL 187

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAI 237
            IS  TV  +I ++ +K    +   AI
Sbjct: 188 FISVETVRKHINNVYKKLQVNSAIEAI 214


>gi|300778489|ref|ZP_07088347.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum
           ATCC 35910]
 gi|300503999|gb|EFK35139.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum
           ATCC 35910]
          Length = 245

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE+E L ++ EG  S EIA +L IS NTV+ +  +I+ K   K  + A
Sbjct: 189 LSPRELEVLKFVGEGYASKEIADMLSISVNTVSRHRQNILEKLKVKNSTQA 239


>gi|45259328|emb|CAE51186.1| RemP protein [Streptomyces resistomycificus]
          Length = 221

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 15/193 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G S F +V         L   V  + P  +V  +  +  D          +        L
Sbjct: 25  GFSEFSVVSVAPDGLSALKE-VRRERPHLVVMGLCPAGSDSAQVARAIRRDFQHVRIVVL 83

Query: 117 PENITPP------AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
             N  P       A   N Y S       +R  L+ +  +G  +         + A    
Sbjct: 84  ATNQQPVYMREAFAAGANAYLSRNIGADELRDTLLTVHREGAALST-------VAAGQML 136

Query: 171 NMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            M      + G    L T RE + L+ +++ + +  IA  LGIS  TV NY++ I  K  
Sbjct: 137 EMLSGRPTNGGSPLSLLTERERQILSLVADEQATHRIAKRLGISPKTVRNYLSRIYAKLG 196

Query: 230 TKTRSGAIAYAVR 242
           T+ R     YA R
Sbjct: 197 TQNRVQTALYAKR 209


>gi|58584166|ref|YP_203182.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428760|gb|AAW77797.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 301

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 228 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 283


>gi|15607984|ref|NP_215359.1| nitrate/nitrite response transcriptional regulatory protein NarL
           [Mycobacterium tuberculosis H37Rv]
 gi|15840258|ref|NP_335295.1| LuxR family DNA-binding response regulator [Mycobacterium
           tuberculosis CDC1551]
 gi|121636767|ref|YP_976990.1| putative nitrate/nitrite response transcriptional regulatory
           protein narL [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148660621|ref|YP_001282144.1| putative nitrate/nitrite response transcriptional regulatory
           protein NarL [Mycobacterium tuberculosis H37Ra]
 gi|148822052|ref|YP_001286806.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis F11]
 gi|167967564|ref|ZP_02549841.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis H37Ra]
 gi|215426107|ref|ZP_03424026.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T92]
 gi|215429700|ref|ZP_03427619.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis EAS054]
 gi|218752509|ref|ZP_03531305.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis GM 1503]
 gi|219556707|ref|ZP_03535783.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T17]
 gi|224989238|ref|YP_002643925.1| putative nitrate/nitrite response transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800134|ref|YP_003033135.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 1435]
 gi|254231154|ref|ZP_04924481.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis C]
 gi|254363780|ref|ZP_04979826.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549820|ref|ZP_05140267.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260185739|ref|ZP_05763213.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CPHL_A]
 gi|260199864|ref|ZP_05767355.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T46]
 gi|289442253|ref|ZP_06431997.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T46]
 gi|289446409|ref|ZP_06436153.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CPHL_A]
 gi|289555375|ref|ZP_06444585.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 605]
 gi|289568806|ref|ZP_06449033.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T17]
 gi|289749363|ref|ZP_06508741.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T92]
 gi|289752898|ref|ZP_06512276.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis EAS054]
 gi|289760976|ref|ZP_06520354.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis GM 1503]
 gi|297633361|ref|ZP_06951141.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 4207]
 gi|297730346|ref|ZP_06959464.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN R506]
 gi|306774968|ref|ZP_07413305.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu001]
 gi|306782118|ref|ZP_07420455.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu002]
 gi|306783512|ref|ZP_07421834.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu003]
 gi|306787876|ref|ZP_07426198.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu004]
 gi|306792217|ref|ZP_07430519.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu005]
 gi|306796615|ref|ZP_07434917.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu006]
 gi|306802502|ref|ZP_07439170.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu008]
 gi|306806684|ref|ZP_07443352.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu007]
 gi|306966881|ref|ZP_07479542.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu009]
 gi|306971075|ref|ZP_07483736.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu010]
 gi|307078803|ref|ZP_07487973.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu011]
 gi|307083362|ref|ZP_07492475.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu012]
 gi|313657672|ref|ZP_07814552.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN V2475]
 gi|81816327|sp|O53856|NARL_MYCTU RecName: Full=Probable transcriptional regulatory protein NarL
 gi|2916903|emb|CAA17650.1| POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY
           PROTEIN NARL [Mycobacterium tuberculosis H37Rv]
 gi|13880417|gb|AAK45109.1| DNA-binding response regulator, LuxR family [Mycobacterium
           tuberculosis CDC1551]
 gi|121492414|emb|CAL70882.1| Possible nitrate/nitrite response transcriptional regulatory
           protein narL [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124600213|gb|EAY59223.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis C]
 gi|134149294|gb|EBA41339.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504773|gb|ABQ72582.1| putative nitrate/nitrite response transcriptional regulatory
           protein NarL [Mycobacterium tuberculosis H37Ra]
 gi|148720579|gb|ABR05204.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis F11]
 gi|224772351|dbj|BAH25157.1| putative nitrate/nitrite response transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321637|gb|ACT26240.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 1435]
 gi|289415172|gb|EFD12412.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T46]
 gi|289419367|gb|EFD16568.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CPHL_A]
 gi|289440007|gb|EFD22500.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 605]
 gi|289542560|gb|EFD46208.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T17]
 gi|289689950|gb|EFD57379.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T92]
 gi|289693485|gb|EFD60914.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis EAS054]
 gi|289708482|gb|EFD72498.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis GM 1503]
 gi|308216464|gb|EFO75863.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu001]
 gi|308325197|gb|EFP14048.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu002]
 gi|308331675|gb|EFP20526.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu003]
 gi|308335475|gb|EFP24326.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu004]
 gi|308339273|gb|EFP28124.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu005]
 gi|308342950|gb|EFP31801.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu006]
 gi|308346834|gb|EFP35685.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu007]
 gi|308350751|gb|EFP39602.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu008]
 gi|308355412|gb|EFP44263.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu009]
 gi|308359364|gb|EFP48215.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu010]
 gi|308363271|gb|EFP52122.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu011]
 gi|308366939|gb|EFP55790.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu012]
 gi|323720707|gb|EGB29783.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CDC1551A]
 gi|328459872|gb|AEB05295.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 4207]
          Length = 216

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  +
Sbjct: 155 LSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRL 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|325110042|ref|YP_004271110.1| LuxR family transcriptional regulator [Planctomyces brasiliensis
           DSM 5305]
 gi|324970310|gb|ADY61088.1| transcriptional regulator, LuxR family [Planctomyces brasiliensis
           DSM 5305]
          Length = 248

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E LT+++EGK+  E+A ++ +S+ +++++   IM +     R      A+R  +
Sbjct: 186 LTPRQLEVLTYLAEGKSVKEVAQVMHLSQKSIDSHKYRIMNRLHVHDRVHLSRIAIREGL 245

Query: 246 V 246
           +
Sbjct: 246 I 246


>gi|309782352|ref|ZP_07677078.1| negative regulator of exopolysaccharide production transcription
           regulator protein [Ralstonia sp. 5_7_47FAA]
 gi|308918888|gb|EFP64559.1| negative regulator of exopolysaccharide production transcription
           regulator protein [Ralstonia sp. 5_7_47FAA]
          Length = 251

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 6/181 (3%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGM 126
            E   D+I ++     LV  + L   D+   + +   RP      V             M
Sbjct: 64  DEGMFDAIETNADAGLLVIGLPLPHLDELSAIGEIMHRPHARHVVVLAESESPDIIRTLM 123

Query: 127 DNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   L L+   G+ I    L     L                K 
Sbjct: 124 QMGLSGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGAPNPALAGDPQTDPKL 183

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A + 
Sbjct: 184 LGITPRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQR 243

Query: 244 N 244
            
Sbjct: 244 G 244


>gi|218130412|ref|ZP_03459216.1| hypothetical protein BACEGG_02001 [Bacteroides eggerthii DSM 20697]
 gi|217987413|gb|EEC53743.1| hypothetical protein BACEGG_02001 [Bacteroides eggerthii DSM 20697]
          Length = 236

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIAV   +S +T+N++  +I RK        A  YA++  I
Sbjct: 169 LTSAERSILKEIALGKTTKEIAVERNLSFHTINSHRKNIFRKLGVNNAHEATKYAMKAGI 228

Query: 246 V 246
           V
Sbjct: 229 V 229


>gi|254478643|ref|ZP_05092015.1| transcriptional regulator, LuxR family protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035419|gb|EEB76121.1| transcriptional regulator, LuxR family protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 204

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 3/107 (2%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGK-DFELTGREVECLTWISE 199
           G + +    + I+ + L  I LLA   A  ++    +    K   +L   + + L   ++
Sbjct: 95  GYVDISTIDKKIVDEVLMVIKLLAEKIATEYEKIVKEKELNKIKIKLNDSQTKILALEAK 154

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G    +IA  LGI   TV  +   I+ K   K    A+A A++  ++
Sbjct: 155 GYRESDIAEALGIGVVTVKYHKRKIVEKLGVKNIKEAVAKAIKLGLI 201


>gi|262377214|ref|ZP_06070439.1| two-component system response regulator protein [Acinetobacter
           lwoffii SH145]
 gi|262307952|gb|EEY89090.1| two-component system response regulator protein [Acinetobacter
           lwoffii SH145]
          Length = 216

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y   +   + I   +  +      +  +      L A    +   + +    +  + 
Sbjct: 98  AMGYIPKSAHPSHIGEAIREVLEGEIWLPPN------LPANMNFDPRAADETALAERIQS 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 152 LTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|254819266|ref|ZP_05224267.1| regulatory protein, LuxR [Mycobacterium intracellulare ATCC 13950]
          Length = 1082

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E + +  + EG  + EI   L IS  TV  ++  +  K    +R   +  A R 
Sbjct: 1024 LTPMENDVVRLVREGLGNKEIGARLFISPRTVQTHLTHVYSKLGLTSRVQLVQEAGRR 1081


>gi|227540526|ref|ZP_03970575.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239608|gb|EEI89623.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
          Length = 209

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T RE E L   ++G TS EIA +L IS +TV ++  +++ K   K  +  I  A+   
Sbjct: 146 KITRREKEILQEAAKGLTSTEIADVLFISSHTVESHRKNLIEKFKVKNIASVIGLALEYG 205

Query: 245 IV 246
           ++
Sbjct: 206 LI 207


>gi|149920858|ref|ZP_01909320.1| hypothetical protein PPSIR1_38636 [Plesiocystis pacifica SIR-1]
 gi|149818257|gb|EDM77710.1| hypothetical protein PPSIR1_38636 [Plesiocystis pacifica SIR-1]
          Length = 268

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R++E    ++ G T+  IA  LGIS  TV +++  I  +    +R+    + V   
Sbjct: 203 PLSPRQLEVSQLVANGMTNAAIAEALGISPRTVTSHLDHIYGRLGIGSRAALTRWIVERG 262

Query: 245 I 245
           +
Sbjct: 263 L 263


>gi|229522242|ref|ZP_04411658.1| nitrate/nitrite response regulator protein [Vibrio cholerae TM
           11079-80]
 gi|229340227|gb|EEO05233.1| nitrate/nitrite response regulator protein [Vibrio cholerae TM
           11079-80]
          Length = 207

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L+  +      +        + +        LT RE++ ++ +++G  + +IA  L I
Sbjct: 114 ALLKQAMQGEKAFSESVERYLLNREHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFI 173

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIA 238
           S +TV  ++ S+++K    +R+ A  
Sbjct: 174 SESTVKVHMKSLLKKLDVPSRTAATI 199


>gi|229526813|ref|ZP_04416217.1| nitrate/nitrite response regulator protein [Vibrio cholerae bv.
           albensis VL426]
 gi|229336971|gb|EEO01989.1| nitrate/nitrite response regulator protein [Vibrio cholerae bv.
           albensis VL426]
          Length = 207

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L+  +      +        + +        LT RE++ ++ +++G  + +IA  L I
Sbjct: 114 ALLKQAMQGEKAFSESVERYLLNREHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFI 173

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIA 238
           S +TV  ++ S+++K    +R+ A  
Sbjct: 174 SESTVKVHMKSLLKKLDVPSRTAATI 199


>gi|153211868|ref|ZP_01947715.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 1587]
 gi|153800895|ref|ZP_01955481.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-3]
 gi|153824326|ref|ZP_01976993.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-2]
 gi|153829689|ref|ZP_01982356.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 623-39]
 gi|229514128|ref|ZP_04403589.1| nitrate/nitrite response regulator protein [Vibrio cholerae TMA 21]
 gi|229528499|ref|ZP_04417890.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           12129(1)]
 gi|124116944|gb|EAY35764.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 1587]
 gi|124123605|gb|EAY42348.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-3]
 gi|148874810|gb|EDL72945.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 623-39]
 gi|149741880|gb|EDM55909.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-2]
 gi|229334861|gb|EEO00347.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           12129(1)]
 gi|229348108|gb|EEO13066.1| nitrate/nitrite response regulator protein [Vibrio cholerae TMA 21]
          Length = 208

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L+  +      +        + +        LT RE++ ++ +++G  + +IA  L I
Sbjct: 114 ALLKQAMQGEKAFSESVERYLLNREHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFI 173

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIA 238
           S +TV  ++ S+++K    +R+ A  
Sbjct: 174 SESTVKVHMKSLLKKLDVPSRTAATI 199


>gi|83593270|ref|YP_427022.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576184|gb|ABC22735.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 254

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 16/199 (8%)

Query: 58  ASHFLLVRWDLF-QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-PVFHT 115
            SHF     D + Q   L    +  W F   + +      +   + +R   ++       
Sbjct: 34  MSHFDQAFLDRYSQAGHLSHDTAVQWVFRFSQPVPWVTPRRLAELSERQIRVWEEGEAFG 93

Query: 116 LPENITPPA--GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR---LWEIGLLAAYQA 170
           +   ++ P   G D     L F    +           R IL D+   L  +        
Sbjct: 94  VRNGLSVPVRFGRDGSAGGLFFSATGLGDD------DWRGILTDKGATLVALAYTFHEAM 147

Query: 171 NMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             F  +            LT RE E L W + G    E+A  LG++  T  +++ +  RK
Sbjct: 148 ERFPLFSTRVNPQDHVIHLTNRERESLIWSARGCQVGEVADRLGVADRTAEHHLGAARRK 207

Query: 228 TATKTRSGAIAYAVRNNIV 246
              +T + A+A A+   ++
Sbjct: 208 LMARTTAQAVARALAMGLL 226


>gi|28898681|ref|NP_798286.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839650|ref|ZP_01992317.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|153841882|ref|ZP_01993448.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260364886|ref|ZP_05777457.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|260879713|ref|ZP_05892068.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260898812|ref|ZP_05907253.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260900783|ref|ZP_05909178.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28806899|dbj|BAC60170.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149745434|gb|EDM56685.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149746824|gb|EDM57812.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308086611|gb|EFO36306.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093313|gb|EFO43008.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308106843|gb|EFO44383.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308111747|gb|EFO49287.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|328474754|gb|EGF45559.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 212

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +       K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + 
Sbjct: 139 QEIKPAHHKPNPLSRREEAVLRLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHST 198

Query: 234 SGAIAYAVRNNI 245
           +    YA    +
Sbjct: 199 AELAKYAFETGL 210


>gi|300785664|ref|YP_003765955.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299795178|gb|ADJ45553.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 345

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EL+ RE++ L  ++ G +  EIA  LGIS +T + ++++I  K    +R
Sbjct: 284 ELSERELDVLRLVAHGLSDQEIARRLGISAHTAHRHVSNIRGKLGVSSR 332


>gi|170692501|ref|ZP_02883664.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170142931|gb|EDT11096.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 490

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            L A +  + +           L+ RE++ L  IS G ++ + A  L +S +TV  ++ S
Sbjct: 408 ALVAERIPVARRAARSVSHGPRLSAREIDVLRAISRGASNKQAAQELTMSPSTVRTHVES 467

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           + RK    TR+ A   A    ++
Sbjct: 468 VFRKLECSTRAAATLKASTMGLI 490


>gi|134100444|ref|YP_001106105.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291005077|ref|ZP_06563050.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133913067|emb|CAM03180.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 221

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 43/82 (52%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LAA +A   +           LT RE +CL  + EG  +  +A  LG+S  TV  ++ S+
Sbjct: 124 LAASRAPKLRGTTDARRLASHLTARERQCLELLVEGAQTRAMARGLGVSSTTVRTHVQSV 183

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K    +R  A ++A+R++++
Sbjct: 184 LTKLGVHSRLEAASFALRHSLL 205


>gi|56681815|gb|AAW21508.1| nitrate/nitrite regulatory protein [Methylophaga
           aminisulfidivorans]
          Length = 226

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           + +       N Y         I   LM +      +    +    L +  + N     +
Sbjct: 93  KLLEALRYGANGYLQKDTPPDEILSQLMSVLHGNVAMNAGAV--TSLASHLRENKDDENN 150

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   +T RE E L +I++G  +  IA  LGIS  TV  Y+ S++RK    +R    
Sbjct: 151 PSSAILSHMTERERETLFYIAKGLNNKLIARELGISDGTVKVYVKSLLRKVNLHSRLELA 210

Query: 238 AYAVRN 243
           A+A RN
Sbjct: 211 AWAHRN 216


>gi|326388719|ref|ZP_08210310.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206793|gb|EGD57619.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 217

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               +   G    LT  +++ L  + EGK + +IA  LG+S  TV  ++ +IMRK   + 
Sbjct: 141 VNPVERVRGTVAGLTPTQLKVLLAVLEGKLNKQIAYDLGMSEATVKAHMTAIMRKLDVQN 200

Query: 233 RSGAIAYAVRNNI 245
           R+ A   A    +
Sbjct: 201 RTQAALAARSLGL 213


>gi|313206656|ref|YP_004045833.1| transcriptional regulator, luxr family [Riemerella anatipestifer
           DSM 15868]
 gi|312445972|gb|ADQ82327.1| transcriptional regulator, LuxR family [Riemerella anatipestifer
           DSM 15868]
 gi|315022153|gb|EFT35182.1| transcriptional regulator, LuxR family protein [Riemerella
           anatipestifer RA-YM]
 gi|325335902|gb|ADZ12176.1| transcriptional regulator [Riemerella anatipestifer RA-GD]
          Length = 252

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +L+ RE   L   + G T +EI+  L ++ +TV  +   I  K   +  S A+AYA
Sbjct: 187 EQKVKLSEREATVLELSARGFTINEISEKLFVTPDTVKFHRRKIFDKLNVQNISEALAYA 246

Query: 241 VRNNIV 246
             N +V
Sbjct: 247 KINKLV 252


>gi|311898017|dbj|BAJ30425.1| putative LuxR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 104

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E    + +G ++ EIA  L +S +TV  ++A I+ KT  +TR+ A   A R +
Sbjct: 32  ELTAREREVFDLLGKGLSNAEIADRLVVSGSTVKAHLARILIKTGAETRTRAALMAQRLH 91


>gi|309790969|ref|ZP_07685510.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308227001|gb|EFO80688.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 215

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           A     Y     D   +  G+ +    GR +    L E  +++AY      S D H    
Sbjct: 95  AAGAVGYVLKDADAVELIHGIRVALQGGRYLSP-TLAER-MISAYLHQ--PSPDQHIDWA 150

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L   ++G ++ EI   L IS  T   +  +++RK   K ++  + +A   
Sbjct: 151 EMLTARERQVLILAAQGLSNAEIGDRLTISPRTAETHRTNLLRKLGLKGQTDLMHFAHER 210

Query: 244 NIV 246
            ++
Sbjct: 211 GLL 213


>gi|226359606|ref|YP_002777384.1| two-component response regulator DevR [Rhodococcus opacus B4]
 gi|226238091|dbj|BAH48439.1| two-component response regulator DevR [Rhodococcus opacus B4]
          Length = 215

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 2/158 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--TLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           V  + +   D     L R      P  H   L       A +D      +  V +   G+
Sbjct: 50  VAVLDVRLPDGNGIELCRELHSLMPDLHCLILTSFTDEQAMLDAILAGASGYVVKDIRGM 109

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L      +     L +          +    D   G    LT +E   L  + EG T+ 
Sbjct: 110 ELAQAVHDVGAGKSLLDSRAAGVLMDKVRADADGKDGIFAHLTNQERTLLALLGEGLTNR 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +IA  + ++  TV NY++ ++ K   + R+ A   A +
Sbjct: 170 QIAARMFLAEKTVKNYVSRLLTKLGVERRTQAAVLATK 207


>gi|90577248|ref|ZP_01233059.1| transcriptional regulator, LuxR family protein [Vibrio angustum
           S14]
 gi|90440334|gb|EAS65514.1| transcriptional regulator, LuxR family protein [Vibrio angustum
           S14]
          Length = 214

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE   L  +++G +S +IA  L IS  TV  +  +I  K    + +    YA+   
Sbjct: 152 PLSRREERVLKHVAQGLSSKQIAKALEISYRTVETHRQNIKHKLELHSTAELAKYALEKG 211

Query: 245 IV 246
           ++
Sbjct: 212 LI 213


>gi|119714209|ref|YP_919351.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526118|gb|ABL79488.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 205

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 33/76 (43%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A          D        LT RE + L  ++ G  +  IA  L +S  TV N+++SI
Sbjct: 126 VANLALAAVTHQDARTAAFPTLTQREHDVLELLALGLPNAGIATRLFLSEKTVRNHVSSI 185

Query: 225 MRKTATKTRSGAIAYA 240
           + K   +TR  A   A
Sbjct: 186 LAKLGVETRHEAAEMA 201


>gi|296118869|ref|ZP_06837442.1| transcriptional regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967967|gb|EFG81219.1| transcriptional regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 294

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
             +  R  E    V   L  +    AG    +     +  ++R     L      +  + 
Sbjct: 150 VTMTARSLEQDLAVNSALRRSDGTKAGAGRGHVMNGAEWEQVRSTHSKLRMLANRVEDES 209

Query: 159 LW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           L  E+  L     +      V   +  +L+ RE++ L+ ++ G T+ E A  +GI   TV
Sbjct: 210 LRKELEALCDQMVS-----PVRVKQSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETV 264

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNN 244
            +Y+ S+MRK    TR  A+  A R  
Sbjct: 265 KSYLRSVMRKLGAHTRYEAVNAARRIG 291


>gi|254820469|ref|ZP_05225470.1| LuxR family transcriptional regulator [Mycobacterium intracellulare
           ATCC 13950]
          Length = 499

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 38/108 (35%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
           R C+   D          +F +             LLA  +    +S         ELT 
Sbjct: 379 RRCNRRIDARSQLGTAHEMFTRMGADAFAARAHRELLATGEKVNKRSGKTGNASGGELTA 438

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +E +      EG T+ EIA  L IS +TV  ++  +  K    +R   
Sbjct: 439 QEAQIARLAGEGLTNPEIAAQLFISSHTVEWHLRKVFAKLGITSRRQL 486


>gi|120600280|ref|YP_964854.1| two component LuxR family transcriptional regulator [Shewanella sp.
           W3-18-1]
 gi|146291788|ref|YP_001182212.1| two component LuxR family transcriptional regulator [Shewanella
           putrefaciens CN-32]
 gi|120560373|gb|ABM26300.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. W3-18-1]
 gi|145563478|gb|ABP74413.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens CN-32]
 gi|319425025|gb|ADV53099.1| two component transcriptional regulator for nitrate/nitrite
           response, NarP [Shewanella putrefaciens 200]
          Length = 209

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQAN 171
           N     G+ +R   LT   A+  +  +L       +L+D   ++        +L     +
Sbjct: 70  NAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVIS 129

Query: 172 MFKSYDVHWGKDF--------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                 ++  K+          LT RE++ L  ++EG ++  I+  L IS  TV  ++ +
Sbjct: 130 EEIEEYLYELKNVADEQEWISSLTPRELQILQQLAEGLSNRMISEHLHISEGTVKVHVKN 189

Query: 224 IMRKTATKTRSG-AIAY 239
           ++RK   K+R+  A+ Y
Sbjct: 190 LLRKANAKSRTEMAVRY 206


>gi|118465517|ref|YP_881567.1| TPR repeat-containing protein [Mycobacterium avium 104]
 gi|118166804|gb|ABK67701.1| tetratricopeptide repeat family protein [Mycobacterium avium 104]
          Length = 863

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              LA    +   + D    +    +GRE + +  ++ G ++ EIA  L IS  TV  ++
Sbjct: 781 AHALAGQCGSRTPALDAA-ARPLPFSGRERQIVNLVAAGLSNREIADRLVISVRTVEGHL 839

Query: 222 ASIMRKTATKTRSGAI 237
             +  K     R   I
Sbjct: 840 YRLFTKLGINNRDQLI 855


>gi|332142663|ref|YP_004428401.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552685|gb|AEA99403.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 225

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE+     I++G  + EIA  L IS NTV  ++ SI RKT  + R   I +
Sbjct: 159 LTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNRVELIKW 212


>gi|295108916|emb|CBL22869.1| ATP-dependent transcriptional regulator [Ruminococcus obeum A2-162]
          Length = 783

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKD-FELTGREVECLTWISEG 200
           L  +  K + I +D  ++  +L      A  +  Y    G++   L+   V+ L   +EG
Sbjct: 678 LFQMLEKDKFIWQDAEYKNQVLTECRQMAEAYPFYLSEEGEEQIALSTNAVKILKLQAEG 737

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             S  IA  + +S  TV  +     RK   K ++ AIA A R  ++
Sbjct: 738 MASAAIAQSMKLSEATVKYHCRETYRKLGVKNKTAAIAEARRRKLI 783


>gi|262191657|ref|ZP_06049834.1| nitrate/nitrite response regulator protein [Vibrio cholerae CT
           5369-93]
 gi|262032446|gb|EEY51007.1| nitrate/nitrite response regulator protein [Vibrio cholerae CT
           5369-93]
          Length = 201

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L+  +      +        + +        LT RE++ ++ +++G  + +IA  L I
Sbjct: 107 ALLKQAMQGEKAFSESVERYLLNREHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFI 166

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIA 238
           S +TV  ++ S+++K    +R+ A  
Sbjct: 167 SESTVKVHMKSLLKKLDVPSRTAATI 192


>gi|254294922|ref|YP_003060945.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Hirschia baltica ATCC 49814]
 gi|254043453|gb|ACT60248.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Hirschia baltica ATCC 49814]
          Length = 905

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  LT  E+E L +++ G ++ EIA +  IS NTV   + S+ +K     R  A+  A
Sbjct: 834 DAEGALTSGELEILNYLNNGLSNKEIARLTSISPNTVKFRLKSVFKKLDVSKRRDAVMIA 893

Query: 241 VRNNIV 246
               +V
Sbjct: 894 REKGLV 899


>gi|256396281|ref|YP_003117845.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362507|gb|ACU76004.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 262

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 77/246 (31%), Gaps = 23/246 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY---VGASHFLLVRWDLFQEQKLDSIVS 79
            S L    DL   ++     V     M +       V     +L R D++ +        
Sbjct: 8   RSELAKILDLAVFLVETADQVEPMQSMRSHLAEHFSVEPGAIVLSRDDVWAQTGCSEAEC 67

Query: 80  SD---WP----FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC- 131
                WP      LV   A +  ++     +R             + +    G +     
Sbjct: 68  RHDGVWPLLDRHPLVTHYARTRDERILAP-RRTVRSDVAWSPRWDDLVREAIGCETYLSM 126

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------ 185
            +       ++ L+    +        L  +  LA+       S  +   +         
Sbjct: 127 PVPAPAGTSQLYLLGTSHRNASWHHSLLATLAPLASAAVKRSISSCLAAARQDSGSPILE 186

Query: 186 -----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE   L  +++  T+D IA  L  S+ TV+ ++ +I RK  T  R   +  A
Sbjct: 187 ADTTILTRRERHVLELLAQSLTADAIAHRLKCSKRTVHKHLQNIYRKLGTADRLQTVLAA 246

Query: 241 VRNNIV 246
            +  +V
Sbjct: 247 QKLGLV 252


>gi|228938954|ref|ZP_04101554.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228971836|ref|ZP_04132457.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228978444|ref|ZP_04138821.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228781461|gb|EEM29662.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228787926|gb|EEM35884.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228820803|gb|EEM66828.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326939456|gb|AEA15352.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 212

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+     +   L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGI 212
           +    L +I       +N+ +S +     D  L T RE+  +  I++G ++ EI+  L I
Sbjct: 125 MQDVVLDKIK------SNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFI 178

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S  T+ NYI S++ KT  + R+    Y
Sbjct: 179 SEGTIANYITSVLGKTELEHRTQIAIY 205


>gi|256379888|ref|YP_003103548.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924191|gb|ACU39702.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 8/165 (4%)

Query: 87  VRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARI 140
           V  + +   D      +           V  T  E+      +      +         +
Sbjct: 52  VLDIRMPRLDGLAAARELKAVAPSTRVVVLTTFGEDDNIVRALSEGAAGFLLKDSAPEEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +      +       +  + A      +   +   +   LT REVE L  +  G
Sbjct: 112 LRAVRAVHAGEAYLSPMVTSRVVGMVAQVGQPRRQEAMRQVQR--LTDREVEVLELLGLG 169

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ ++   L +S  TV  Y++ ++ K     R  A   A    +
Sbjct: 170 MSNADVGQRLHMSEATVKTYVSRLLAKLGLTNRVQAALLARDAGL 214


>gi|254507428|ref|ZP_05119563.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
 gi|219549684|gb|EED26674.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
          Length = 209

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            R     LL  Y+ NM ++         +LT RE+  L  +  G ++ +IA    IS  T
Sbjct: 123 PRKVAAQLLFHYR-NMVETQSAPVT--VDLTTREIHILRSLMTGASNSQIAEDQFISEFT 179

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V +++  I +K   K R  A A+A R +++
Sbjct: 180 VKSHLYQIFKKLCVKNRVQAAAWA-RQHLL 208


>gi|170741524|ref|YP_001770179.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168195798|gb|ACA17745.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 234

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQA--NMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           LF   + +L  R++    +A      N   + ++   +  ++T R+ E L  +++G ++ 
Sbjct: 103 LFAAIKDLLSGRIYVPRWVADDDGGNNEILALEISPMERLKITARQREILYLLAQGMSNK 162

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           EI+ IL I+  T   +  +++R    + R+ A   AV+
Sbjct: 163 EISRILQIAEGTAKIHTTALLRALGARNRTEAATVAVK 200


>gi|257056771|ref|YP_003134603.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256586643|gb|ACU97776.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 923

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ ++      +++G T+ EIA  L IS  TV++++ +I  K   ++R    A
Sbjct: 868 LSPQQERIAQLVADGATNKEIATQLFISHRTVDHHLRNIFAKLDVRSRVQLAA 920


>gi|220912826|ref|YP_002488135.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219859704|gb|ACL40046.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 226

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ +E + L  + +G T+ +I   L ++  TV NY++SI+ K   + R+ A  +  RN
Sbjct: 164 LSAQEKKVLALVGQGLTNRQIGDELFLAEKTVKNYVSSILAKLGFERRTQAAVFVTRN 221


>gi|328886165|emb|CCA59404.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 223

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 9/178 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQR-------PTELFCPVFHTLPENITPPAGMDN 128
            +V+   P  ++  + + E D      +R       P  +    FH   + +        
Sbjct: 42  ELVARYAPDVVLMDIRMPEVDG-LTATERLRGTPGAPEVVVLTTFHADEQVLRALRAGAA 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +       A I   +  +     ++      ++    A Q           G+  EL  
Sbjct: 101 GFVLKDTPPAEIVAAVRRVAAGDPVLSPAVTRQLMTHVAGQPERTPRT-AAAGRLGELAD 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E    +  G ++ EIA  L +S  TV  +++ ++ K     R           ++
Sbjct: 160 REREVAVAVGRGLSNAEIATELYMSVPTVKTHVSRVLAKLGLNNRVQIALLVHDAGLL 217


>gi|325109956|ref|YP_004271024.1| LuxR family transcriptional regulator [Planctomyces brasiliensis
           DSM 5305]
 gi|324970224|gb|ADY61002.1| two component transcriptional regulator, LuxR family [Planctomyces
           brasiliensis DSM 5305]
          Length = 231

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  Y   M             L+ R+ E L +++ G T  E+A ++ +S  +V+++   I
Sbjct: 148 IRHYLDEMSHGSHTGGTPAETLSVRQKEVLRYLALGHTVKEVAAMMHLSVKSVDSHKYRI 207

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
           M+K     R     YA+R  +
Sbjct: 208 MKKLDLHDRVHLARYAIREGL 228


>gi|111019666|ref|YP_702638.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819196|gb|ABG94480.1| possible transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 775

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L+        S       D  LT RE E    +++G +S ++A  L ISR TV+ ++  
Sbjct: 688 MLSFALREHRVSPVEPRQADSLLTPREREVAELVAQGMSSKDVAAKLVISRRTVDVHVEH 747

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I  K    +R+    +  +  
Sbjct: 748 IFGKLGFNSRTQIATWVAQRR 768


>gi|327485685|gb|AEA80091.1| Nitrate/nitrite response regulator protein [Vibrio cholerae
           LMA3894-4]
          Length = 201

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L+  +      +        + +        LT RE++ ++ +++G  + +IA  L I
Sbjct: 107 ALLKQAMQGEKAFSESVERYLLNREHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFI 166

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIA 238
           S +TV  ++ S+++K    +R+ A  
Sbjct: 167 SESTVKVHMKSLLKKLDVPSRTAATI 192


>gi|304408345|ref|ZP_07389992.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304342634|gb|EFM08481.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 222

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 10/151 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM---LLFPKGRIILRDRLWEI 162
            EL   +  T P++I       +   +    +     G +     + +   ILR  L   
Sbjct: 66  LELTRRIMETHPDSIILIYTGFDIAPNFNILIEAGVSGFVNKATSWARLINILRCALQGE 125

Query: 163 GLLAAYQANMFKSYDVHWG-------KDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            +L        +  D+          +   +  RE   L  I++GK++ EIA ++ +S+ 
Sbjct: 126 TVLPTMLVKELRRTDIKVPVGSNDSLEHISINQREQAILQEIAQGKSNKEIAAMMFMSQR 185

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +   ++ I  K    +RS AI  A ++ ++
Sbjct: 186 MIEYNLSKIFEKLNVSSRSEAITEAKKHGLI 216


>gi|222085009|ref|YP_002543538.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722457|gb|ACM25613.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 213

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 2/132 (1%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLML--LFPKGRIILRDRLWEIGLLAAYQANMF 173
           LP+       M +    ++  +    +G +L  +     +   + +   G   +      
Sbjct: 77  LPDTRIVMLSMHDSREYISSSIMHGAVGYILKDVSTDEVVCAIETVASGGTYFSSGVRDI 136

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              D    +   LT RE   L  I  G+++ EIA  LGI+  T   +  ++ RK    T 
Sbjct: 137 LMADEAGMEASPLTPREHHILGLIVTGRSNREIAEELGITPATAETHRKNLKRKLGIATT 196

Query: 234 SGAIAYAVRNNI 245
           +G I YA+ + I
Sbjct: 197 AGLIRYALDHGI 208


>gi|134103752|ref|YP_001109413.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291007722|ref|ZP_06565695.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133916375|emb|CAM06488.1| protein kinase/transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 745

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSD 204
           +     +   +R      LA   A+     +V    D   +LT RE E    ++ G ++ 
Sbjct: 643 MLRVAELRSAEREGSSFTLAEAVADALGEREVVSPADVPAQLTRREREVADLVARGLSNR 702

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +IA  L I++ T +++I  I+ K    +R+   A+
Sbjct: 703 QIAQQLVIAKRTSDSHIEHILTKLGFSSRAQIAAW 737


>gi|121585556|ref|ZP_01675352.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           2740-80]
 gi|121725924|ref|ZP_01679224.1| nitrate/nitrite response regulator NarP [Vibrio cholerae V52]
 gi|147671981|ref|YP_001215452.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395]
 gi|153818114|ref|ZP_01970781.1| nitrate/nitrite response regulator NarP [Vibrio cholerae NCTC 8457]
 gi|153820709|ref|ZP_01973376.1| nitrate/nitrite response regulator NarP [Vibrio cholerae B33]
 gi|227812241|ref|YP_002812251.1| nitrate/nitrite response regulator NarP [Vibrio cholerae M66-2]
 gi|229506165|ref|ZP_04395674.1| nitrate/nitrite response regulator protein [Vibrio cholerae BX
           330286]
 gi|229509977|ref|ZP_04399457.1| nitrate/nitrite response regulator protein [Vibrio cholerae B33]
 gi|229516462|ref|ZP_04405909.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC9]
 gi|229605704|ref|YP_002876408.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           MJ-1236]
 gi|254849833|ref|ZP_05239183.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MO10]
 gi|298499474|ref|ZP_07009280.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MAK 757]
 gi|121550173|gb|EAX60187.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           2740-80]
 gi|121631689|gb|EAX64057.1| nitrate/nitrite response regulator NarP [Vibrio cholerae V52]
 gi|126511382|gb|EAZ73976.1| nitrate/nitrite response regulator NarP [Vibrio cholerae NCTC 8457]
 gi|126521752|gb|EAZ78975.1| nitrate/nitrite response regulator NarP [Vibrio cholerae B33]
 gi|146314364|gb|ABQ18904.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395]
 gi|227011383|gb|ACP07594.1| nitrate/nitrite response regulator NarP [Vibrio cholerae M66-2]
 gi|227015263|gb|ACP11472.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395]
 gi|229346343|gb|EEO11314.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC9]
 gi|229352422|gb|EEO17362.1| nitrate/nitrite response regulator protein [Vibrio cholerae B33]
 gi|229356516|gb|EEO21434.1| nitrate/nitrite response regulator protein [Vibrio cholerae BX
           330286]
 gi|229372190|gb|ACQ62612.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           MJ-1236]
 gi|254845538|gb|EET23952.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MO10]
 gi|297541455|gb|EFH77506.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MAK 757]
          Length = 208

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L+  +      +        + +        LT RE++ ++ +++G  + +IA  L I
Sbjct: 114 ALLKQAMQGEKAFSESVERYLLNREHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFI 173

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIA 238
           S +TV  ++ S+++K    +R+ A  
Sbjct: 174 SESTVKVHMKSLLKKLDVPSRTAATI 199


>gi|86742704|ref|YP_483104.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86569566|gb|ABD13375.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 300

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 43/110 (39%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +  +R     L      +    L      AA +                L+ RE + L  
Sbjct: 190 LEELRSVHSELRAIAGAMSDSALQRRIYAAAQRLVAVGESGPGKNSKVRLSTRETDVLAQ 249

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G T+ E+A  L +SR TV  Y+ S MRK    TR  A+  A +  ++
Sbjct: 250 VALGCTNAEVANRLSLSRETVKAYLQSAMRKLDAGTRYEAVVRARKAMLI 299


>gi|328883671|emb|CCA56910.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 219

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 3/160 (1%)

Query: 89  CMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            M + +       L+R      +         EN+            L        IG +
Sbjct: 60  QMPVLDGLSALPELRRAAPSSRVIVLTTFGERENVLRTLEHGGAGFLLKDTAPAELIGAV 119

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                G   L        +            +   G+   L+ +E E L  + EG ++ +
Sbjct: 120 RAAAAGDAYLSPAATRHVVERLAAGREMTRAEEARGRVAGLSEKEREVLALLGEGLSNAD 179

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
               L +S  TV  Y++ I+ K   + R  A   A    +
Sbjct: 180 AGRRLHMSEATVKTYVSRILAKLDCENRVQAALLARDAGL 219


>gi|300694201|ref|YP_003750174.1| transcription regulator protein, luxr family [Ralstonia
           solanacearum PSI07]
 gi|299076238|emb|CBJ35552.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 89

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              + W     LT R+ + L   + GK++ EIA  L IS  TV  ++  I+ +   + R+
Sbjct: 13  PIPMAWPHHPMLTTRQQDILREAAYGKSNAEIAQTLHISVETVKTHVRQILMRLEARNRT 72

Query: 235 GAIAY---AVRNN 244
              A    A+ ++
Sbjct: 73  ELAAMYQQALHHH 85


>gi|260467405|ref|ZP_05813576.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028801|gb|EEW30106.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 863

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L  I  G ++  IA  L IS  TV++++++++ K    +R  A A A  + +
Sbjct: 803 LTQRQMEVLQLIERGLSNKRIAEHLAISPKTVDHHVSAVLGKLDAISRGEATAAARDSGL 862

Query: 246 V 246
           +
Sbjct: 863 I 863


>gi|194017154|ref|ZP_03055766.1| response regulator [Bacillus pumilus ATCC 7061]
 gi|194011022|gb|EDW20592.1| response regulator [Bacillus pumilus ATCC 7061]
          Length = 199

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
            T  +      G D +   LT           L       +L+D   E   LA+   ++ 
Sbjct: 60  KTGLDAAEELKGTDVKIIILTTFARSGYFQRALKAGVSGYMLKDSPSED--LASAIRSVM 117

Query: 174 KSYDVHWGK--------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           K   V+  +        +  LT RE   L  +++GK + EIA  L I   TV NYI+ I+
Sbjct: 118 KGKKVYAPELMEDLYSDENPLTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIIL 177

Query: 226 RKTATKTRSGAIAYAVRNN 244
            K   K R  AI  +    
Sbjct: 178 DKLEVKNRIEAITRSKEKG 196


>gi|327193774|gb|EGE60651.1| two-component response regulator protein [Rhizobium etli CNPAF512]
          Length = 223

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I YA+ + 
Sbjct: 149 PLTPRERDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIRYALDHG 208

Query: 245 I 245
           I
Sbjct: 209 I 209


>gi|326330391|ref|ZP_08196700.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|326330396|ref|ZP_08196704.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951671|gb|EGD43703.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325951817|gb|EGD43848.1| transcriptional regulator, LuxR family protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 322

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
               + +        LT RE+  L  I+ G T+ +IA  L +S +TV +++  I+ K   
Sbjct: 243 RRRATPESVMTTTSGLTSRELGVLRLIATGATNTQIASALVLSESTVKSHVKHILHKLPA 302

Query: 231 KTRSGAI 237
             R+ A+
Sbjct: 303 ANRAEAV 309


>gi|296117403|ref|ZP_06835992.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976056|gb|EFG82845.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC
           23769]
          Length = 256

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + F LT +EVE +  + +G ++ EI+ I+ I  +TV  +I +I+ KT   +R+ A AY
Sbjct: 195 EKFYLTNKEVEVVFLLEKGASNWEISEIMHIGISTVKTHIVNILNKTGVGSRAAAAAY 252


>gi|229065659|ref|ZP_04200888.1| Response regulator [Bacillus cereus AH603]
 gi|228715632|gb|EEL67427.1| Response regulator [Bacillus cereus AH603]
          Length = 597

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 64/164 (39%), Gaps = 4/164 (2%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           +    +S  +    + QR  ++      T  +++     ++     Y   +     ++  
Sbjct: 434 ISMQGMSGIETLLEMKQRWPDMKVVFMTTFEDSLQAATALEHGAEGYMLKSIHPREMKEA 493

Query: 144 LMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           L L++  G  I +         + + +  + K         + LT RE+E L  +S G  
Sbjct: 494 LKLIYNGGIWIDQSVATRIFEEMKSQREQLEKIGSSQENFPYGLTKREMEILEHLSGGLR 553

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              IA  L +S  T+ NY +++  K +   R  AI  A + NIV
Sbjct: 554 YKSIAAKLFLSEGTIRNYCSTLYSKLSVNNREEAITRARKENIV 597


>gi|225377710|ref|ZP_03754931.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM
           16841]
 gi|225210459|gb|EEG92813.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM
           16841]
          Length = 186

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E + +  I+EG+   +IA  L IS  T++N++  I  K    +   A+  A++   
Sbjct: 122 LTDSEKQIIQLIAEGQKRKDIASTLYISERTLSNHLQHIFEKLDVTSAVEAVTKAIQLGY 181

Query: 246 V 246
           +
Sbjct: 182 I 182


>gi|27380416|ref|NP_771945.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27353580|dbj|BAC50570.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 121

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVRN 243
           T RE E +  I+ G  +  IA  L IS NTV  +I +IMRK   + R+  AI YA++ 
Sbjct: 28  TPRERELMMLIARGMQNKNIAYELKISENTVRAHIGNIMRKYRLQNRTQIAIIYALKT 85


>gi|150018604|ref|YP_001310858.1| two component LuxR family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905069|gb|ABR35902.1| two component transcriptional regulator, LuxR family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 220

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 5/187 (2%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G +H      D+ +++++D I   D   + +    L    K      +   L    F+
Sbjct: 31  ITGLAHDGKEALDILEKEQVD-IALVDLNMEGMSGQEL--ILKVKTTYPKMKILVLTTFY 87

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                +       + Y         I  G+  +     ++    +  +  + +  +N   
Sbjct: 88  DEENIVKAVMHGADGYLLKDAGTKVIVQGIFNVMNGQSMLDSKVMTALANIMSKCSNENT 147

Query: 175 SYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             + +   D    LT RE+E    +S+G T+ +IA  L IS  TV NYI++I  KT  K 
Sbjct: 148 DKNKYHNVDLLKNLTEREIEICQLLSDGYTNSQIAEFLYISEGTVKNYISTIYDKTEIKD 207

Query: 233 RSGAIAY 239
           R+     
Sbjct: 208 RTMLALK 214


>gi|328542623|ref|YP_004302732.1| Two component transcriptional regulator, LuxR family [polymorphum
           gilvum SL003B-26A1]
 gi|326412369|gb|ADZ69432.1| Two component transcriptional regulator, LuxR family [Polymorphum
           gilvum SL003B-26A1]
          Length = 233

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 8/153 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF-DVARIRI--GLMLL 147
            +S  +    + +R  ++   V   L +     A +    C     DV R  +      +
Sbjct: 76  DVSGSEGLVALRRRLPDVPITVVSALMKPRLVSASLAAGACGFVPKDVDREHMCAAFRKM 135

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     I      E       +  +  S      +   LT ++ + L  +  GK +  IA
Sbjct: 136 WSGEVYIPDGYTPEEA-----EGELVLSQQDILSRLATLTPQQTKILKLVCAGKPNKLIA 190

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             L I+  TV  ++ +I+RK    +R+ A+  A
Sbjct: 191 YDLSIAETTVKAHVTAILRKLGAHSRTQAVLVA 223


>gi|269958095|ref|YP_003327884.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306776|gb|ACZ32326.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 223

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVHWGKDFE 185
            Y     +   +   +  +     + L   L         A   A           +   
Sbjct: 99  GYVVKGVESRELVHAIETVAHGDALFLGPGLARRVLAHFTATRAAASAPRVTNPVLEAAR 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G  + EI+  L ++  TV N +++I+ K    +R  A+ +A    +
Sbjct: 159 LTDRETEVLELMAAGWGNAEISQRLYLAPKTVRNNVSTILGKLQASSRGEAVVWARAQGL 218


>gi|226364088|ref|YP_002781870.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242577|dbj|BAH52925.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 379

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L+ I+ G T+++IA  L IS  TV +++  I++K    TR+ A  
Sbjct: 319 LTFREREILSHIATGATNNQIAQTLVISEGTVKSHVKHILKKLRVPTRAAAAV 371


>gi|217969732|ref|YP_002354966.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507059|gb|ACK54070.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 226

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y      VA + + +  +      +       +        NM             L
Sbjct: 100 ARGYLLKDAAVAELEMAIAAVMRGDVYLSPAVSRHL------VGNMLARPPEDERAASVL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T R+ E L  I  G  + EIA  L +S  TV  + A IM +   +  +  +  A R  ++
Sbjct: 154 TPRQTEILELIGSGLGTKEIARRLDLSVKTVEAHRAQIMERLGVRDIANLLLEAARRGLI 213


>gi|111026453|ref|YP_708736.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110825296|gb|ABH00578.1| protein kinase/ transcriptional regulator, LuxR family [Rhodococcus
            jostii RHA1]
          Length = 1097

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE +    ++ G T+ EIA  L IS  T   ++  ++ K    +R+   A+ V +
Sbjct: 1039 LTKREQQVADLVARGMTNKEIAAQLVISPRTAQGHVEHVLTKLGFSSRAQIAAWVVEH 1096


>gi|94495818|ref|ZP_01302397.1| probable transcriptional regulator [Sphingomonas sp. SKA58]
 gi|94424510|gb|EAT09532.1| probable transcriptional regulator [Sphingomonas sp. SKA58]
          Length = 491

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 1/155 (0%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+E+  +     R       +   L    +     D     +  D+   R   + L   
Sbjct: 329 DLAERTAFRGRDARLRAKDGGITDCLVSAASISLRKDTCILWVIQDIHERRHSELELIGA 388

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVI 209
              +++D  W    +    AN+   +      +  ELT RE E L+ +  G     IA  
Sbjct: 389 IEAVMKDTNWFSRTVVEKLANLRAPHGAARPVETSELTRREKEVLSLLCGGGDDAAIAKE 448

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +G+SRNT+ N++A +  K     R+ AI +A    
Sbjct: 449 MGVSRNTLRNHVARVYAKIGVNRRAQAILWARERG 483


>gi|88797548|ref|ZP_01113137.1| two-component system, response regulator [Reinekea sp. MED297]
 gi|88779720|gb|EAR10906.1| two-component system, response regulator [Reinekea sp. MED297]
          Length = 218

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT +++  L  + +G+ + +IA  L IS  TV  ++ +I RK     R+ A+  A + +
Sbjct: 152 ELTDQQLRVLRHLQDGRLNKQIAYDLDISEATVKAHVTAIFRKLNVLNRTQAVILANKLH 211

Query: 245 I 245
           +
Sbjct: 212 V 212


>gi|113969064|ref|YP_732857.1| LuxR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883748|gb|ABI37800.1| transcriptional regulator, LuxR family [Shewanella sp. MR-4]
          Length = 221

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|308050738|ref|YP_003914304.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632928|gb|ADN77230.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 215

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D    +   L+ R+   L   +EG  + +IA  LG+S  TV  + ++I  K   +TR+
Sbjct: 137 ELDEMAVRIASLSPRQHRILMLFAEGLLNKQIATRLGLSEATVKAHASAIFLKLGVRTRT 196

Query: 235 GAIA 238
            A+ 
Sbjct: 197 QAVI 200


>gi|291618350|ref|YP_003521092.1| NarP [Pantoea ananatis LMG 20103]
 gi|291153380|gb|ADD77964.1| NarP [Pantoea ananatis LMG 20103]
 gi|327394743|dbj|BAK12165.1| nitrate/nitrite response regulator protein NarP [Pantoea ananatis
           AJ13355]
          Length = 210

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVEC 193
           V     G +L   +  I+LR  +  +     +   +  +  +    D     LT RE   
Sbjct: 98  VDAGADGYLLKDSEPEILLRQIMQALQGETVFSDAVRHALSMRHNSDDPFRLLTERERGV 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    +   
Sbjct: 158 MQEVARGLSNKDVAHALHISEETVKVHIRNVLRKLDVRSRVAATIMWIERR 208


>gi|171057984|ref|YP_001790333.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775429|gb|ACB33568.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 273

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 9/174 (5%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLT- 134
           I +S+   D++RC+       +         LF  +   +   I  PP        +L  
Sbjct: 82  ISASERAADVIRCID-GGAMGFVPKRASNEMLFEALHLVMSGGIYVPPMARGLGGPNLPS 140

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGR 189
              A++  GL    P        R    G+ A      + S  +   +        LT R
Sbjct: 141 VPDAQVFPGLPAQGPLSIAAAGPRDRPDGVHAGMSIGPWSSRGMALPRPASLDALGLTPR 200

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + + L  + EGK +  IA  LG+S  TV +++A+++R    ++R  A+  AVR+
Sbjct: 201 QAKVLMLLMEGKANKVIAKELGLSVETVKDHVAAVLRCLGVRSRMQAVI-AVRH 253


>gi|58613938|gb|AAW79571.1| transcriptional activator [Pseudomonas fluorescens]
          Length = 234

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 16/145 (11%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI-----GLMLLFPKGRII 154
           NV+ RP  L    +    +      G++  +     DV  +RI     G      + RI+
Sbjct: 100 NVIARPQLLGSEFYVDFLKPAGMYHGINIYFFDKGVDVGDLRIWRGAGGQSFTLREERIL 159

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                     L+ Y     +S          L+GRE +    ++ G +  E+A  LGI+ 
Sbjct: 160 NS--------LSPY---FVRSLSPTLHPVQGLSGREADVARLVANGASDKEVARQLGIAF 208

Query: 215 NTVNNYIASIMRKTATKTRSGAIAY 239
            TV  ++ + M K     R+    +
Sbjct: 209 TTVRTHLNNAMCKLDCVNRTQLARH 233


>gi|332296491|ref|YP_004438414.1| two component transcriptional regulator, LuxR family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179594|gb|AEE15283.1| two component transcriptional regulator, LuxR family
           [Thermodesulfobium narugense DSM 14796]
          Length = 231

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G ++ EIA  L IS  TV  Y   I  K   + RS  + YA+   +
Sbjct: 154 LSSREDQVLRLLALGYSAKEIAQTLQISPKTVQTYRQRITTKLDLRRRSDIVRYAISKGL 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|268610997|ref|ZP_06144724.1| transcriptional regulator, LuxR family protein [Ruminococcus
           flavefaciens FD-1]
          Length = 253

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +ELT RE + L  I  G+++  IA IL IS +TV  +I ++  K + ++R   I+
Sbjct: 193 YELTTREAQVLELICSGESNQNIANILSISVSTVKKHIYNLFDKISVQSRGQLIS 247


>gi|116621568|ref|YP_823724.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224730|gb|ABJ83439.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 225

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            ++  +    +L+    +   +     +    ++        +         +   L  +
Sbjct: 60  GMNGIEATTELLRHCPSVKVIILSMYDDENSVVSAIRSGARAFVLKKASSNELLDALRTV 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +         LL   Q    +++D        L+ RE++ L  ++EGKTS +IA
Sbjct: 120 ARGGSYLSSQVSDR--LLQRIQRGDLETHD--RSPLESLSPRELQVLRLVAEGKTSKDIA 175

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V+L +   TV +Y  ++M+K      +G    A+   I
Sbjct: 176 VLLDLGLQTVRSYRKTMMKKLGVNNVAGLTQLALAAGI 213


>gi|331694577|ref|YP_004330816.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949266|gb|AEA22963.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 748

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  G    LT RE E    ++ G T+ EIA  L +S  TV  ++   + K   +TR
Sbjct: 672 PEDPWRAGPGAGLTRREREIAALVATGMTNREIAGRLQLSVRTVEVHVDHALTKVGLRTR 731

Query: 234 SGAIAYAVRNNI 245
           +   A+  ++ +
Sbjct: 732 TQLAAWLHQDGL 743


>gi|223936278|ref|ZP_03628191.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895140|gb|EEF61588.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 247

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 65/183 (35%), Gaps = 15/183 (8%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPEN 119
           +      +E     I+  + P  ++  + L           +     +    +   + + 
Sbjct: 60  VCACTSGEEAL--RIIPQEQPDVILMDIFLPRMSGIECTARLKVLLPQTQIVILTAMDDQ 117

Query: 120 ITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                 ++   + Y       A +R  L+ +   G  +        G +A      F+  
Sbjct: 118 ELVFLALEAGADGYLLKRTKPADLRTALLEVLRGGAPM-------TGQIARRVIESFRRN 170

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             +  +   L+ RE + L  +S+G ++  IA  L +S +TV +++  +  K    +R+ A
Sbjct: 171 AKNRDESVRLSVREEQILLLLSQGYSNKLIASKLELSIDTVCSHLKHVFYKLHVSSRTEA 230

Query: 237 IAY 239
           +  
Sbjct: 231 VVR 233


>gi|319795753|ref|YP_004157393.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315598216|gb|ADU39282.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 202

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L  +++G+ + +IA  L I+  TV  +I +++     + R+  +  A R  +
Sbjct: 138 LTPRQLEVLLLVAQGRQNKQIAAELQIAERTVKLHITALLDAMDARNRTHLLVQARRAGL 197


>gi|239945320|ref|ZP_04697257.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991779|ref|ZP_04712443.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448782|ref|ZP_06588172.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351729|gb|EFE78633.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 244

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 59/178 (33%), Gaps = 4/178 (2%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+    +V  D    ++  +  +E+ +       P  +    FH   + +         +
Sbjct: 58  ERLRPDVVLMDIRMPVMDGLTATERLRRRP--DAPEVVVLTTFHADEQVLRAIRAGAAGF 115

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFELTG 188
                  ARI   +  +     ++      ++   AA     +     +    +  +L  
Sbjct: 116 VLKDTPPARIVDSVRRVAAGDPVLSPAVTRQLMARAAGGGHGDRADRTERARRRFGQLAE 175

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E    +  G ++ EIA  L +S  TV  +++ I+ K     R           ++
Sbjct: 176 REQEVAVAVGRGGSNAEIAASLYLSVATVKTHVSRILAKLELNNRVQIALLVHDAGLL 233


>gi|91782267|ref|YP_557473.1| ATP-dependent transcription regulator LuxR [Burkholderia xenovorans
           LB400]
 gi|91686221|gb|ABE29421.1| ATP-dependent transcriptional regulator, MalT related, LuxR family
           [Burkholderia xenovorans LB400]
          Length = 251

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 11/170 (6%)

Query: 85  DLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           DLV  + L+  D Y       +        +    P ++  P  +  R         R R
Sbjct: 84  DLVSLL-LASMDAYSRAGRGREAARAFSRAISLAHPGSLVYPFILYQRAVCKVIANTRAR 142

Query: 142 IGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              ++   +   +  DRL EI     G   +  A+  +       +   LT RE + L  
Sbjct: 143 DFGLIRQAEISFL--DRLHEICSQSDGDALSQTAHPAELTAGPVDEVQPLTARETQLLRL 200

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG ++  +A  L +S  TV  ++ ++  K   + RS A+A A    ++
Sbjct: 201 VNEGLSNQTVADQLSLSLPTVKWHLRNLYDKLGVRNRSAALAKARAYGLL 250


>gi|126175697|ref|YP_001051846.1| response regulator receiver protein [Shewanella baltica OS155]
 gi|125998902|gb|ABN62977.1| transcriptional regulator, LuxR family [Shewanella baltica OS155]
          Length = 249

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 14/168 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARI 140
            F L+     +  +K   +L        PV  +    +++   + M      L F   R 
Sbjct: 75  SFYLITQKGSALDNKGIPLLASRLVSHFPVALYQVERDSLDQESAMLLGIRGLLFADQR- 133

Query: 141 RIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVE 192
              L L+    R ++ + LW +  LL+     + +  D +     +       LT RE  
Sbjct: 134 ---LDLMLTGLRKMVAEELWYDRTLLSKVFRRVVQKLDGNNEMPSDSVAMLQMLTSRERT 190

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 191 IIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 238


>gi|330447815|ref|ZP_08311463.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492006|dbj|GAA05960.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 214

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE   L  +++G +S +IA  L IS  TV  +  +I  K    + +    YA+   
Sbjct: 152 PLSRREEGILKHVAQGLSSKQIAKALDISYRTVETHRQNIKHKLDLHSTAELAKYALEKG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|256390270|ref|YP_003111834.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356496|gb|ACU69993.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 205

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSD 204
            P    I    +  + LLA Y +   + Y V   +      LT RE + +  +++G ++ 
Sbjct: 107 APDEASIDEREIALMELLAQYLSPRLREYFVRSKEVRDGSSLTDREAQVVRLVAQGMSNR 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            IA  L I  +TV  ++ S M+KT    R+      +R
Sbjct: 167 LIAAELHIRVDTVKKHVMSAMQKTGAGNRTQLALIHLR 204


>gi|281419800|ref|ZP_06250799.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
 gi|281406176|gb|EFB36856.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
          Length = 318

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +L+ RE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ 
Sbjct: 248 DEQLSDREKDVIVALVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPAGLTIYAIV 307

Query: 243 NNIV 246
           NN+V
Sbjct: 308 NNLV 311


>gi|255746558|ref|ZP_05420505.1| nitrate/nitrite response regulator protein [Vibrio cholera CIRS
           101]
 gi|262158852|ref|ZP_06029965.1| nitrate/nitrite response regulator protein [Vibrio cholerae INDRE
           91/1]
 gi|262168521|ref|ZP_06036217.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC27]
 gi|255736312|gb|EET91710.1| nitrate/nitrite response regulator protein [Vibrio cholera CIRS
           101]
 gi|262023050|gb|EEY41755.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC27]
 gi|262029425|gb|EEY48076.1| nitrate/nitrite response regulator protein [Vibrio cholerae INDRE
           91/1]
          Length = 201

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L+  +      +        + +        LT RE++ ++ +++G  + +IA  L I
Sbjct: 107 ALLKQAMQGEKAFSESVERYLLNREHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFI 166

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIA 238
           S +TV  ++ S+++K    +R+ A  
Sbjct: 167 SESTVKVHMKSLLKKLDVPSRTAATI 192


>gi|332672006|ref|YP_004455014.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332341044|gb|AEE47627.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 212

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 12/183 (6%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPP 123
             + L  +V+   P   V  + +   D     ++   E      L    F          
Sbjct: 35  DGRALVDLVARTAPDVAVVDVRMPVLDGIAATVRVVAEHPGTRVLILTTFDLDEYVYDAL 94

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        R+   + L+     ++  +    +        +  +   V     
Sbjct: 95  RAGASGFLLKDVTAERLVDAVRLVADGSMLLGANVTRRL------VEDFARRGRVPSTTL 148

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE +    ++ G ++ EIA  L I   TV  +++  +RK   + R   +      
Sbjct: 149 DALTPREHDVALAVARGLSNGEIAAELFIGEATVKTHVSECLRKLGCRDRVQLVVTVHEA 208

Query: 244 NIV 246
            ++
Sbjct: 209 GLL 211


>gi|330961081|gb|EGH61341.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 99

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  + A  +               LT R+ + L  + +G T+ EIA  L  S +TV +++
Sbjct: 14  LQRIQALLSGELPEPRTIASTPLTLTSRQRQVLGLLCQGLTNKEIASQLWRSEHTVRSHV 73

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I+       R+ A   A R  +V
Sbjct: 74  QAILTILQASCRTEAADTARRLGLV 98


>gi|319780563|ref|YP_004140039.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166451|gb|ADV09989.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 862

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 136 DVARIRIGLMLLFPKGRIIL--RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              R  + +        +    R+ +   G++   +                LT R++E 
Sbjct: 754 PAQRAALEIFETLGAKPVASHVREIMRRNGVIRIARGPR----QTTRANSAGLTQRQMEV 809

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I  G ++  IA  L IS  TV++++++++ K    +R  A A A  + ++
Sbjct: 810 LQLIERGFSNKRIAEHLTISPKTVDHHVSAVLGKLDAISRGEATAAARDSGLI 862


>gi|296101290|ref|YP_003611436.1| LuxR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055749|gb|ADF60487.1| LuxR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 206

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ R+ E L  + +G ++ +I  +LGI+  TV N++ ++ R+   + R+ A 
Sbjct: 147 LSPRQREILHLVVQGNSNKQICRVLGIAEGTVKNHLHALFRQLGVRNRTEAA 198


>gi|238060047|ref|ZP_04604756.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237881858|gb|EEP70686.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 264

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 173 FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            +   V     F+ LT RE + L  ++ G+T+  IA   G+S  TV N ++++  K    
Sbjct: 189 LQRQPVELPPPFDRLTPRERDILRHLATGETNARIARRFGLSEKTVRNQLSAVFAKLGVT 248

Query: 232 TRSGAIAYAVRNNI 245
            R  A   A    +
Sbjct: 249 DRVQAALLARDAGL 262


>gi|218528264|ref|YP_002419080.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218520567|gb|ACK81152.1| transcriptional regulator, LuxR family [Methylobacterium
           chloromethanicum CM4]
          Length = 500

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I +G T  EIA  LG+S +TV N++AS+ RK     RS  + +A    
Sbjct: 425 KLTRRERDLLLGICKGATDSEIAAELGLSLSTVRNHLASLYRKIGVNRRSAVVVWARERG 484

Query: 245 I 245
           I
Sbjct: 485 I 485


>gi|227818570|ref|YP_002822541.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36958825|gb|AAQ87250.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234]
 gi|227337569|gb|ACP21788.1| transcriptional regulator, LuxR family [Sinorhizobium fredii
           NGR234]
          Length = 240

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 17/205 (8%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
             L  T+S  + + ++ E VG     L R D  Q+   D +V        +    ++  D
Sbjct: 40  DALAMTLSGLVGIQSI-ESVGTLDAALARLD--QDGPPDVVVLD------LNLPDVNGLD 90

Query: 97  KYYNVLQRPTELFCPVFHTLPEN-ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
               + Q   ++   V  +L E  +            +    AR              I 
Sbjct: 91  GVVRLRQAAPQIPIVVVSSLDELRVIRALLKAGINGFVPKHAARDEFRAAFAAIARGEIH 150

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
             ++       A +       D    +   LT ++ + L  +  G  + +IA  L I+  
Sbjct: 151 APQM-------ALEPGSPSLSDEAVARLGLLTRQQAKILQLVCAGLMNKQIAYELSIAET 203

Query: 216 TVNNYIASIMRKTATKTRSGAIAYA 240
           TV  ++ +IMRK   +TR  A+ +A
Sbjct: 204 TVKAHVTAIMRKLGVQTRMQAVLFA 228


>gi|92109679|ref|YP_571965.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91802761|gb|ABE65133.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 234

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           + L   +      S       +  L+ +E   L+W S GK+ + IA +LGI   TV  Y+
Sbjct: 150 LALAYIHIHLSLASASSLKVGEVSLSAQEATSLSWSSHGKSMNVIADLLGIKPRTVQFYL 209

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +   K        A+  A+   ++
Sbjct: 210 DNARDKLGASNLQQAVRIAMEKKLI 234


>gi|307610855|emb|CBX00470.1| hypothetical protein LPW_21881 [Legionella pneumophila 130b]
          Length = 191

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
               S    V R    ++ +  K   +    L  IG L  +   + +S  +H      LT
Sbjct: 80  GESLSAYEHVLRHDGTIVNIVSKKSPLFDKELNLIG-LVGFSIELPQSNVIHI-----LT 133

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            RE   L  +SEG T  + A  LGIS  TV  +I +  +K   KTR+  IA
Sbjct: 134 PREYNTLLLLSEGYTDKQTAKKLGISPRTVEAHINNSKQKLGIKTRAELIA 184


>gi|260204041|ref|ZP_05771532.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis K85]
 gi|289573466|ref|ZP_06453693.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis K85]
 gi|289537897|gb|EFD42475.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis K85]
          Length = 216

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  +
Sbjct: 155 LSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQRL 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|226306044|ref|YP_002766004.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226185161|dbj|BAH33265.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 285

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+   AN+ +        D  LT REV+ L+ ++ G T+ E    L +   TV +Y+ S 
Sbjct: 204 LSQRLANLLRPT-ADAESDVALTPREVDVLSQVALGCTNIEAGQRLSLRPETVKSYLRSA 262

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           M K    +R  A+  A R  ++
Sbjct: 263 MGKLDASSRHEAVVTARRLGLL 284


>gi|117921851|ref|YP_871043.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614183|gb|ABK49637.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3]
          Length = 221

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|290957234|ref|YP_003488416.1| response regulator [Streptomyces scabiei 87.22]
 gi|260646760|emb|CBG69857.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 241

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
            R+   ++        +  D L   G L      + +S     G     L  RE++ L  
Sbjct: 135 HRLAQAVLAASRGDGDLPADLL---GRLINQVGTLQRSVAGRTGAPLSGLVPREIDVLRL 191

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG  + EIA  L  S  TV N +  +  +   + R+ A+AYA+R   +
Sbjct: 192 VAEGMDTGEIASKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALREGYI 241


>gi|332671746|ref|YP_004454754.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332340784|gb|AEE47367.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484]
          Length = 857

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + +G ++ EIA  L IS  TV N++  ++ K     R+  +A AV+
Sbjct: 801 LTAREHEVARLVGDGLSNPEIAERLTISVKTVENHLNRVLHKLGVADRAD-VARAVQ 856


>gi|311898395|dbj|BAJ30803.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 3/133 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F                +     +   +  G+  +     ++         L++++ A  
Sbjct: 83  FDLDAYVWGALRAGAAGFLLKDLEAEALVDGVRTVARGDGMLAPSVTRR--LISSF-ARP 139

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                V  G    LT +E E L  +  G ++ EIA+ L  +  T   +++ I+ K   ++
Sbjct: 140 GAPDPVGPGALDGLTPKEREVLGCLGAGLSNAEIALRLRTAEATTKTHVSRILAKLGLRS 199

Query: 233 RSGAIAYAVRNNI 245
           R  A   A    +
Sbjct: 200 RVQAAILAQELGV 212


>gi|302131479|ref|ZP_07257469.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 222

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 3/141 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +     HT P+ I        R   L    A      +      +  L   +    +L  
Sbjct: 79  VLILSMHTDPDMIIRALDAGARGYLLKDTTATELEQALEALRNDQRYLSPAIAHT-VLER 137

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR--NTVNNYIASIM 225
                         + + LT R++E L  I  GK++ EIA  LG+S    TV  + + IM
Sbjct: 138 AVHGTRAERARAARERYNLTARQLEILRLIVRGKSTREIASGLGLSLSIKTVETHRSQIM 197

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           ++      +G + + VR  I+
Sbjct: 198 KRLQIFDVAGLVLFCVRERII 218


>gi|300727173|ref|ZP_07060591.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
 gi|299775559|gb|EFI72151.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
          Length = 199

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ +++G  + EIA  L I   TV  +  +I  K   K+ S    YAV +  
Sbjct: 134 LSDREIEVLSLVAQGHINKEIAEKLNIGLTTVITHRKNIQEKLGMKSVSALTIYAVMHGY 193

Query: 246 V 246
           V
Sbjct: 194 V 194


>gi|241662724|ref|YP_002981084.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|240864751|gb|ACS62412.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 219

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 6/181 (3%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGM 126
            E   D+I ++     LV  + L   D+   + +   RP      V             M
Sbjct: 32  DEGMFDAIETNADAGLLVIGLPLPHLDELSAIGEIMHRPHARHVVVLAESESPDIIRTLM 91

Query: 127 DNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   L L+   G+ I    L     L                K 
Sbjct: 92  QMGLSGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGAPNPALAGDPQTDPKL 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A + 
Sbjct: 152 LGITPRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQR 211

Query: 244 N 244
            
Sbjct: 212 G 212


>gi|167763839|ref|ZP_02435966.1| hypothetical protein BACSTE_02219 [Bacteroides stercoris ATCC
           43183]
 gi|298480014|ref|ZP_06998213.1| transcriptional regulator [Bacteroides sp. D22]
 gi|167697955|gb|EDS14534.1| hypothetical protein BACSTE_02219 [Bacteroides stercoris ATCC
           43183]
 gi|298273823|gb|EFI15385.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 183

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L+ R++E +  + +GK   EIA  L IS NTVNN+  +  RK    + +  + YA+ 
Sbjct: 119 NSKLSDRQIEVMRMLYDGKNDSEIAEKLFISLNTVNNHRKNSFRKVGVHSMAEFMRYAMT 178

Query: 243 NNI 245
           NN+
Sbjct: 179 NNL 181


>gi|163752091|ref|ZP_02159298.1| transcriptional regulator, LuxR family protein [Shewanella benthica
           KT99]
 gi|161328037|gb|EDP99208.1| transcriptional regulator, LuxR family protein [Shewanella benthica
           KT99]
          Length = 210

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 16/173 (9%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            ++  +  IV      D+     + ++    +   R   L  P        I P      
Sbjct: 44  IKKGGVSLIVIDLATVDVQNAYQI-QRHVEKDYSSRVVFLHYPRQIDARFLIHPTVTAGI 102

Query: 129 RYCSLTF-DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
            YC  +  DV +    ++    +G+ ++  +L         Q+N+  S +        LT
Sbjct: 103 FYCDASLEDVGQGLANIL----RGKSVIPAQLIHNS--GDDQSNLEGSDN--------LT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G T+  IA  L +S +T+  ++    RK    +R  AIA+A
Sbjct: 149 IREREVLQALLSGSTNVNIASQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWA 201


>gi|21222655|ref|NP_628434.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|8439479|emb|CAB94221.1| putative response regulator [Streptomyces coelicolor A3(2)]
          Length = 219

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 2/110 (1%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             R+   ++        +  D L    L++        +          L  REV+ L  
Sbjct: 112 AHRLVQAVLAASRGDGDLPADLLGR--LISQVGTLHRGAAGRPGAPSLGLAPREVDVLRL 169

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG  + EIA  L  S  TV N +  +  +   + R+ A+AYA+R   +
Sbjct: 170 VAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALREGYI 219


>gi|325279884|ref|YP_004252426.1| transcriptional regulator, LuxR family [Odoribacter splanchnicus
           DSM 20712]
 gi|324311693|gb|ADY32246.1| transcriptional regulator, LuxR family [Odoribacter splanchnicus
           DSM 20712]
          Length = 206

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  +        L+ RE E +T + +G T+ EIA  L +S +TV  +  +I RK    + 
Sbjct: 125 EETEEELAGQEVLSSREKEIITCVVKGMTNKEIADALYLSAHTVITHRRNIARKLQIHSP 184

Query: 234 SGAIAYAVRNNIV 246
           +G   YA+ N +V
Sbjct: 185 AGLTIYAIVNKLV 197


>gi|319902473|ref|YP_004162201.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
 gi|319417504|gb|ADV44615.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
          Length = 258

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + L      G + +  R        ++    +K  +     +  LT RE + L +  +G 
Sbjct: 159 VSLSSATGHGNVTMNQRNSSAHYEYSFVTRRWKEVN-----NIALTERESDILRYSIKGL 213

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EI   L I  +TV  +   I  K  T   + AI  AV   ++
Sbjct: 214 SNTEIGEKLFIDASTVKFHKRKIFDKLHTDNITEAINVAVCKKLI 258


>gi|307700729|ref|ZP_07637754.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
 gi|307613724|gb|EFN92968.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
          Length = 189

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 68/185 (36%), Gaps = 10/185 (5%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF-------CPVFHTLPENIT 121
           F    +  +V    P  ++  + + + D      ++  E F          F        
Sbjct: 6   FDGHHVLDLVQKHHPDVVLMDVEMPKMDG-IEATRQIKERFPNLGVIMLTNFRHDTWLKE 64

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + + +     A +   + L+   GR +         L+A Y+   F     +  
Sbjct: 65  ALEAGADGFLTKDAPRADLSAAIKLVAKGGRFMSAKPFN--MLIANYEDPNFIPDPKYTA 122

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT  E +    + +GK++ +IA  L    +T+  ++ SIM+K   ++R+  + ++ 
Sbjct: 123 GKQALTPAERDVWQEVLKGKSNAQIAKTLHSQESTIKTHMTSIMQKFQVRSRAELLVFSA 182

Query: 242 RNNIV 246
           +N  +
Sbjct: 183 KNGAI 187


>gi|303257286|ref|ZP_07343300.1| transcriptional regulatory protein FixJ [Burkholderiales bacterium
           1_1_47]
 gi|302860777|gb|EFL83854.1| transcriptional regulatory protein FixJ [Burkholderiales bacterium
           1_1_47]
          Length = 218

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P   ++L   + E    +             + +   LT RE E     ++GKT+ EI+ 
Sbjct: 116 PTNPLLLNKVIAEASQKSLSTQPKNSQRKEEYARYRSLTPREKEIFKLAADGKTNKEISS 175

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGA 236
           +L I+  TV  +  +   K    +   A
Sbjct: 176 LLNIALPTVKMHRGNAFDKLNVHSSVEA 203


>gi|146277025|ref|YP_001167184.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555266|gb|ABP69879.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 247

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 7/145 (4%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
            V +   E+   V       +      ++    +       R  L        I+   RL
Sbjct: 88  PVTEVSREIATLVAEAGVAPVVVIGAANDLREMIAAFDCGARSYLPSSVGIDDIVEASRL 147

Query: 160 WEI-------GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
                       L A +  +    + H   +  LT R+      +  GK++  IA  L +
Sbjct: 148 ASFDGIFLPTASLTALRGALPDREESHMAVNEHLTERQRAVCDALRRGKSNKIIAGELNL 207

Query: 213 SRNTVNNYIASIMRKTATKTRSGAI 237
             +TV  +I +IM+K   K R+ A 
Sbjct: 208 CESTVKVHIRNIMKKLGAKNRTEAA 232


>gi|325676632|ref|ZP_08156309.1| LuxR family protein kinase/transcriptional regulator [Rhodococcus
           equi ATCC 33707]
 gi|325552560|gb|EGD22245.1| LuxR family protein kinase/transcriptional regulator [Rhodococcus
           equi ATCC 33707]
          Length = 787

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +   LT RE +    +++G T+ EIA  L IS+ T   ++  ++ K    +R+   
Sbjct: 719 VPAEESPGLTRRERQVADLVAQGMTNREIAETLVISQRTAEGHVERVLAKLGFGSRTQIA 778

Query: 238 AYAVRNN 244
           A+    N
Sbjct: 779 AWVAERN 785


>gi|226363129|ref|YP_002780911.1| serine/threonine protein kinase [Rhodococcus opacus B4]
 gi|226241618|dbj|BAH51966.1| putative serine/threonine protein kinase [Rhodococcus opacus B4]
          Length = 1088

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%)

Query: 178  VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               G    LT RE E    I+EG T+  IA  L IS  T   ++  I+ K    +R+   
Sbjct: 1020 PESGASTRLTKREHEVADLIAEGLTNQAIADRLVISPRTAQGHVEHILAKLGFTSRTQVA 1079

Query: 238  AYAVRN 243
            A+ V  
Sbjct: 1080 AWVVEQ 1085


>gi|154493931|ref|ZP_02033251.1| hypothetical protein PARMER_03275 [Parabacteroides merdae ATCC
           43184]
 gi|154086191|gb|EDN85236.1| hypothetical protein PARMER_03275 [Parabacteroides merdae ATCC
           43184]
          Length = 202

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N +
Sbjct: 135 LSAREKEIVVCVVKGMTNREIADRLFLSTHTVVTHRRNIARKLQVHSASGLTVYAIVNKL 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|153011292|ref|YP_001372506.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151563180|gb|ABS16677.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 251

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI----AYAV 241
            T REV+ LT +  G ++  IA  L +S NTV  ++  IMRK   + R+  +    A A 
Sbjct: 185 FTPREVDVLTELQRGHSNKVIAEKLNLSGNTVKMHLQHIMRKLHVQNRTEVVLLLGAKAT 244

Query: 242 RNN 244
            N 
Sbjct: 245 ANG 247


>gi|196033655|ref|ZP_03101067.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196044984|ref|ZP_03112217.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|218902956|ref|YP_002450790.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225863697|ref|YP_002749075.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|228931489|ref|ZP_04094404.1| Response regulator [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229090808|ref|ZP_04222037.1| Response regulator [Bacillus cereus Rock3-42]
 gi|229121388|ref|ZP_04250618.1| Response regulator [Bacillus cereus 95/8201]
 gi|229184030|ref|ZP_04311244.1| Response regulator [Bacillus cereus BGSC 6E1]
 gi|300117584|ref|ZP_07055367.1| response regulator [Bacillus cereus SJ1]
 gi|195994089|gb|EDX58045.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196023986|gb|EDX62660.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|218536231|gb|ACK88629.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225789961|gb|ACO30178.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|228599469|gb|EEK57075.1| Response regulator [Bacillus cereus BGSC 6E1]
 gi|228662077|gb|EEL17687.1| Response regulator [Bacillus cereus 95/8201]
 gi|228692511|gb|EEL46241.1| Response regulator [Bacillus cereus Rock3-42]
 gi|228828170|gb|EEM73890.1| Response regulator [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|298725019|gb|EFI65678.1| response regulator [Bacillus cereus SJ1]
          Length = 212

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 11/157 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           VR   ++  +    + +  TE    +  T  ++      + N    Y     D  RIR  
Sbjct: 56  VRMPNMNGVEATKLICEE-TETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKT 202
           +  ++    ++    L +I        N+  S +     D  L T RE+  +  I++G +
Sbjct: 115 IKGVYNGQTVMQDVVLDKIK------CNLMGSKEDECKIDTSLFTERELSIIALIAKGFS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 169 NKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|229589824|ref|YP_002871943.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361690|emb|CAY48571.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 219

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 54/151 (35%), Gaps = 7/151 (4%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLMLLF 148
            LS       + Q   +    V    P+       +        L        +  M   
Sbjct: 61  GLSGLQVLDELRQLRLDCQVVVLTASPDRAELLTALRLGASGYVLKETEPDALLAYMRNC 120

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            KG I+L   L  I LLA           +  G    LT RE + L  I+ G ++ +I  
Sbjct: 121 HKGAIVLDSTL--IALLADQAEPSPSCDPIDSG---NLTEREGQTLALIAAGMSNKQIGR 175

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LGIS  TV  Y+ S+++K    +R    A+
Sbjct: 176 ELGISDGTVKIYVRSLLQKLGLHSRLELAAW 206


>gi|226314223|ref|YP_002774119.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226097173|dbj|BAH45615.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 858

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 78/217 (35%), Gaps = 8/217 (3%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            D+      L       +   ++   +    ++ +     QEQ+   I++   P  +   
Sbjct: 632 GDIALAKTELSKLPPSILNQPSIQRELEVLTYVRLLLAQQQEQEALRILTILKPSSIREE 691

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI-RIGLMLLF 148
           + +S+ D    +LQ      C         +     +    C +   +     +  +L  
Sbjct: 692 LLISQVD--IAILQALAHQQCGNKKEALAFLHEALLIGGNNCYVRSFLDEGTAMSHLLHD 749

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTS 203
            + R+  R +     + AAY   +   +     K        LTG+E+  L+ ++EG ++
Sbjct: 750 YQLRLKKRSQQPGPSVPAAYVNQLLSLFPKKMEKRKAPLIEPLTGKEMIILSMLAEGASN 809

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             IA  LG +  TV  Y+  I  K     R+ A+  A
Sbjct: 810 KMIADELGNTLGTVKVYLHRIYGKLGVTNRTQALLKA 846


>gi|18699286|gb|AAL78509.1|AF456804_1 probable transcriptional activator TraR [Sinorhizobium meliloti]
 gi|38374154|gb|AAR19282.1| TraR [Sinorhizobium meliloti]
          Length = 234

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 24/233 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+  +            +       G   F  ++ + FQ +  +S     +P        
Sbjct: 8   LIDMLEAAQDEQMIKSALRNFAHACGYDRFAYLQKEAFQVKTFNS-----YPGSWEGIYL 62

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY----------CSLTFDVARIR 141
            S+      V+          F T  +     +    R+          C +T  V    
Sbjct: 63  GSDYSSIDPVVTEAKRRGDVFFWTADDWPARGSSPLRRFRDEAIDHGIRCGVTMPVEGSY 122

Query: 142 IGLMLL---FPKGRIILRDRLW-----EIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              M+L    P+  I +   L      ++ +   Y+  M  +      K   L+ RE+ C
Sbjct: 123 GSAMMLTFASPERNIDISGALDPKKAIQMVMTVHYRLKMIAAKTAVNPKQM-LSPREMLC 181

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKT+ E A++ GI+  TV +Y+     K   ++    +A A    +V
Sbjct: 182 LVWATRGKTAPETAMLTGINPRTVQHYLDKARAKLGAESVPQLVAIAKDRGLV 234


>gi|94984291|ref|YP_603655.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554572|gb|ABF44486.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 200

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 23/174 (13%)

Query: 77  IVSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRY 130
           +     P  LV  + +      D    +  R  E+   +  T          ++     Y
Sbjct: 42  LACELRPDVLVTDIEMPRLSGLDLAERLRTRCPEVRVVIVTTFARAGYLRRALEVGARGY 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  + +   +  +   GR I      + GL A             WG+   LT RE
Sbjct: 102 LLKDAPASDLAGAIRQVHAGGRAI------DPGLAA-----------EAWGERDPLTERE 144

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            + L     G ++  IA  L +S  TV NY++  + K   + R  A   A    
Sbjct: 145 RQVLRAAEGGASTAVIAARLNLSEGTVRNYLSEAISKLGCENRIEAARKAREQG 198


>gi|289644029|ref|ZP_06476128.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289506154|gb|EFD27154.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 73

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        LT RE E    +  G  +++I   L IS  TV ++I +I+RK     RS A
Sbjct: 2   DAPEESPGILTSREREVADLMCAGLPNEQIGERLVISPATVKSHIRAILRKLGAANRSHA 61

Query: 237 IAYAVRN 243
           IA  +R+
Sbjct: 62  IAIHLRH 68


>gi|262198719|ref|YP_003269928.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262082066|gb|ACY18035.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM
           14365]
          Length = 373

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + LT RE +   WI +GK + +IA ILGI   TV  +   I  K   + R+   +
Sbjct: 301 YPLTAREAQVAWWICQGKNNPDIATILGIRPATVKKHTERIYFKLGVENRTSLAS 355


>gi|291326201|ref|ZP_06123556.2| nitrate/nitrite response regulator protein NarL [Providencia
           rettgeri DSM 1131]
 gi|291315361|gb|EFE55814.1| nitrate/nitrite response regulator protein NarL [Providencia
           rettgeri DSM 1131]
          Length = 212

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++ G  + EI+ +L IS  TV  +I +I++K   ++R  A    +R+ 
Sbjct: 154 LTRRESEILHEMAVGLKNREISNLLFISEETVKVHIRNILKKLRVRSRLEASLIYMRSR 212


>gi|148273146|ref|YP_001222707.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831076|emb|CAN02021.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 224

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL           D        LT RE    T +  G ++ EIA  L I+  TV  ++  
Sbjct: 141 LLERLAVERTAPPDPDTAALDVLTDRERVVFTRLVTGASNPEIARDLSIAEVTVKTHVGH 200

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
           I+ K A + R   + +A R  +
Sbjct: 201 ILTKLAVRDRVHLVIWAHRRGL 222


>gi|159045392|ref|YP_001534186.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157913152|gb|ABV94585.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 236

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 6/161 (3%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           +    + ++ +      + P             G+ N+  S+       +  +  +  + 
Sbjct: 74  IKGTYQRFHPVDWKQLDWSPKAAREFMGEALETGVGNQGLSVPVRGPNGQFAVFSVNNRA 133

Query: 152 -----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDE 205
                    ++ L    L A +        +       + L+ RE + LT ++ G +  +
Sbjct: 134 TDAAWESYQKEYLKTFILAAHFINQRALELEEDINPTAKPLSPRESDALTHLANGLSRGQ 193

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +A  L IS +T+  YI S   K      + A+A A+   ++
Sbjct: 194 VAEKLKISEHTLRVYIESARFKLGAANTTHAVARAMVRGLI 234


>gi|167621873|ref|YP_001676658.1| LuxR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351614|gb|ABZ74344.1| transcriptional regulator, LuxR family [Caulobacter sp. K31]
          Length = 74

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R  E L   S+G T+ +I   LG+S  TVN Y++   ++   + R+ A+  AV+   
Sbjct: 6   LTPRLREVLILASDGLTAIQIGDALGLSYRTVNQYLSDAYKRLGARNRTQAVTIAVQRGE 65

Query: 246 V 246
           +
Sbjct: 66  I 66


>gi|27762474|gb|AAO23018.1| putative regulatory protein MdlX [Pseudomonas putida]
          Length = 233

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 2/116 (1%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           PA M++      FD  R    L +   KG     +R  E  LL+  Q  + K++      
Sbjct: 118 PADMEHGLNVFFFDGDRDIGDLRVWRSKGSKPFSER--EERLLSTLQPYVQKAFSPAPTL 175

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              L+ RE E    +++G +  E+A  L I+ +TV  ++ + M K   + R+    
Sbjct: 176 SQRLSLREAEVAELVAQGASDKEVARRLDIAFSTVRTHLKNAMAKLECQNRTQLAR 231


>gi|17545904|ref|NP_519306.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428199|emb|CAD14887.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
 gi|299067237|emb|CBJ38434.1| putative transcription regulator protein [Ralstonia solanacearum
           CMR15]
          Length = 222

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 6/181 (3%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGM 126
            E   D+I +      LV  + L   D+   + +   RP      V             M
Sbjct: 35  DEGMFDAIEAHADAGLLVIGLPLPHLDELSAIGEIMHRPHARHVVVLAESESPDIIRTLM 94

Query: 127 DNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   L L+   G+ I    L     L                K 
Sbjct: 95  QMGLSGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGTPNPSLAGDPQTDPKL 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A + 
Sbjct: 155 LGITPRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQR 214

Query: 244 N 244
            
Sbjct: 215 G 215


>gi|312890670|ref|ZP_07750204.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311296836|gb|EFQ73971.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 305

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 31/98 (31%), Gaps = 4/98 (4%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW----GKDFELTGREVECLTWISEGK 201
            LF     I R  L        Y        D        K   LT +E E    + +G 
Sbjct: 204 FLFISAVFIRRSILLHRLEKRLYLGQAPFQNDPVKVEANCKRHNLTRKETEISGMVCQGM 263

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              EIA  L IS  TV+ +I +I  K     R      
Sbjct: 264 IYREIADKLFISLRTVDKHIENIFDKVGVSNRVELARK 301


>gi|307546152|ref|YP_003898631.1| LuxR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218176|emb|CBV43446.1| two component transcriptional regulator, LuxR family [Halomonas
           elongata DSM 2581]
          Length = 221

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 4/172 (2%)

Query: 71  EQKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTELF-CPVFHTLPENITPPAGMDN 128
            +    +V+     DL+   + +     +  ++Q   +    PV      +         
Sbjct: 39  MEATTEVVTRHPDADLILLDLHMPGAHGFSGLIQLRGQTPDIPVAVVSGSDELHVVRRAI 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +  F        L L+      IL   +W    +A       +           LT 
Sbjct: 99  DYGASGFIPKSA--SLALIAEAVGEILDGEVWLPEEMAEALGEADEEDTRFAEAIASLTP 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++   L  ++EG  + +IA  L +S  T+  ++ +I+RK    +R+ A+  A
Sbjct: 157 QQFRVLNMLTEGLLNKQIAFELNVSEATIKAHVTAILRKLGVHSRTQAVIAA 208


>gi|297160246|gb|ADI09958.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 190

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   LT RE+E L   S+G+ S +IA  L +S  TV NY+ S++ K   + R  AI  A
Sbjct: 125 DKPQPLTPRELEVLLLASQGEGSAQIAARLYLSVGTVRNYLTSVVTKLNARNRVDAIRIA 184

Query: 241 VRNN 244
               
Sbjct: 185 REAG 188


>gi|296877409|ref|ZP_06901446.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|296431570|gb|EFH17380.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
          Length = 199

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            +LA  +    +  +        L+ +E   L  +++G ++ EIA  L +S  T+ NY++
Sbjct: 116 AVLAGQKEYSPELMEGILTHPNPLSPQEKAVLKEVAKGASNQEIADRLFLSNGTIRNYMS 175

Query: 223 SIMRKTATKTRSGAIAYAVRNN 244
           +I+ K   + R+ A   A    
Sbjct: 176 AILTKLDAENRTEAAKIAQEKG 197


>gi|282879611|ref|ZP_06288342.1| hemerythrin HHE cation binding domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306559|gb|EFA98588.1| hemerythrin HHE cation binding domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 318

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 7/146 (4%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV--ARIRIGLMLLFPKGRIILRDRLWE 161
           +  EL   +   LP N      M+N+  +  +D+      + L  +      I   R  E
Sbjct: 170 KLKELKNIIIKYLPSNG----LMNNQLTATLYDIYNCEQWLTLHSMVEDEIFIPAIRHIE 225

Query: 162 IGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
             L  +  +    S           L+ RE E +  + +G T+ EIA  L IS NTV  +
Sbjct: 226 KKLRQSDVSIKISSMLSQVPHSQEILSEREKEVIVSLVQGMTNKEIADHLFISINTVITH 285

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
             +I RK    + SG   YA+ NN++
Sbjct: 286 RRNIARKLQIHSPSGLTIYAIVNNLI 311


>gi|284030063|ref|YP_003379994.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809356|gb|ADB31195.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 62/176 (35%), Gaps = 11/176 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPT-----ELFCPVFHTLPENITPPAGMDN-R 129
            + +   P  ++  + +   D               ++       L E +    G     
Sbjct: 44  ELATRLHPDVVLMDIRMPGTDGLTATRVVCARLPATKVLVLTTFDLDEYVYEALGAGATG 103

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +   +  V  I   +  +     ++  +      L+A       +     +    +L+ R
Sbjct: 104 FLLKSAPVTDILRAIHTVHEGQAMLSPEITRR--LIAEVSRGRTRRTPEAFE---QLSPR 158

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+E +  +  G +++E+A  L +S +TV  Y++ I  K   + R+  +  A  + +
Sbjct: 159 ELELVGAVLRGLSNEELAAELFLSLSTVKTYLSRIFSKLDVRDRTQLVILAYESGL 214


>gi|17549362|ref|NP_522702.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431615|emb|CAD18292.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 177

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+ + L  ++ GK++ EIA  L IS  TV +++  I+ +   + R+   A 
Sbjct: 112 LTPRQQDILREVASGKSNVEIAQTLHISVETVKSHMQQILMRLEARNRTELAAM 165


>gi|319937288|ref|ZP_08011695.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319807654|gb|EFW04247.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 67

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E  T ++  KT+ +IA  L IS  TV N+I+++++K   ++R  A+   ++   
Sbjct: 5   LTKREKEIFTLLTFNKTTKQIAEELCISEKTVRNHISNVIQKLGVESRIQAVLELIKMKE 64

Query: 246 V 246
           +
Sbjct: 65  I 65


>gi|315649798|ref|ZP_07902881.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315274772|gb|EFU38153.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 216

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 2/136 (1%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L    F      +       + Y        RI  G+  ++    +I  D   ++  +  
Sbjct: 80  LMLTTFDNDDYIVEALRNGASGYLLKNIPPDRIIQGIKTVYDGNMLIHPDIARKLTGMLR 139

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                    DV       LT  E   +  I+EG ++ EIA  L +S  T+ NY+  I+ K
Sbjct: 140 PAPQSVSQSDVLGS--LGLTPAEKNIVGLIAEGLSNKEIAGQLYLSEGTIKNYVTEILGK 197

Query: 228 TATKTRSGAIAYAVRN 243
              + R+    + ++ 
Sbjct: 198 LNLRDRTQIAIFYLKK 213


>gi|312138909|ref|YP_004006245.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311888248|emb|CBH47560.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 771

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +   LT RE +    +++G T+ EIA  L IS+ T   ++  ++ K    +R+   
Sbjct: 703 VPAEESPGLTRRERQVADLVAQGMTNREIAETLVISQRTAEGHVERVLAKLGFGSRTQIA 762

Query: 238 AYAVRNN 244
           A+    N
Sbjct: 763 AWVAERN 769


>gi|293374136|ref|ZP_06620470.1| transcriptional regulator, LuxR family [Turicibacter sanguinis
           PC909]
 gi|325837421|ref|ZP_08166403.1| spore germination protein GerE [Turicibacter sp. HGF1]
 gi|292647239|gb|EFF65215.1| transcriptional regulator, LuxR family [Turicibacter sanguinis
           PC909]
 gi|325490953|gb|EGC93251.1| spore germination protein GerE [Turicibacter sp. HGF1]
          Length = 70

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    +    T+ EIA  L IS  TV N+I++++ K   K RS AI   ++  +
Sbjct: 8   LTKREQEIFNLLVRNMTTSEIAEELKISEKTVRNHISNVILKLNVKGRSQAIIELLKLGV 67

Query: 246 V 246
           +
Sbjct: 68  I 68


>gi|196231881|ref|ZP_03130737.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224003|gb|EDY18517.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 195

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE   L  I+EG ++ E+A  + I+  TV ++ A +M+K      +    YAVR  
Sbjct: 130 HLTDRERAILQMIAEGMSNKEMAERISIAPKTVEHHRAQVMQKLGMHDVATLTRYAVRMG 189

Query: 245 IV 246
           +V
Sbjct: 190 LV 191


>gi|157693347|ref|YP_001487809.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682105|gb|ABV63249.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 199

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
            T  +      G D +   LT           L       +L+D   E   LA+   ++ 
Sbjct: 60  KTGLDAAEELKGTDVKIIILTTFARSGYFQRALKAGVSGYMLKDSPSED--LASAIRSVM 117

Query: 174 KSYDVHWGK--------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           K   V+  +        +  LT RE   L  +++GK + EIA  L I   TV NYI+ I+
Sbjct: 118 KGKKVYAPELMEDLYSDENPLTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIIL 177

Query: 226 RKTATKTRSGAIAYAVRNN 244
            K   K R  AI  +    
Sbjct: 178 DKLEVKNRIEAITRSKEKG 196


>gi|83859075|ref|ZP_00952596.1| two-component system regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852522|gb|EAP90375.1| two-component system regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 220

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT  ++  L  ++ G+ + +IA  +GIS  TV  ++ +I RK     R+ A+  A
Sbjct: 152 QLTPAQMRVLHGLAAGRLNKQIAFDMGISEATVKAHVTAIFRKLDVINRTQAVLVA 207


>gi|328765792|gb|EGF75911.1| hypothetical protein BATDEDRAFT_93225 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 152

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  IS G+T+ EIA  +GIS  TV  Y+   ++K     R+  +A   R  I
Sbjct: 91  LSNREFEVMNKISYGETTKEIASSMGISELTVKQYVKLALKKLNAANRAHGVAELFRLGI 150


>gi|313680133|ref|YP_004057872.1| two component LuxR family transcriptional regulator [Oceanithermus
           profundus DSM 14977]
 gi|313152848|gb|ADR36699.1| two component transcriptional regulator, LuxR family [Oceanithermus
           profundus DSM 14977]
          Length = 196

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 24/214 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++  D    + + + A  E  G S  ++       E     +V +  P  ++  + +  
Sbjct: 2   RLLIADDHPLFRIGLRAALEKEGFS--VVAEAGDGDEAV--RLVETHQPEVVILDIRMPR 57

Query: 95  KDK--YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            D       L++       V  T            +   +  +         +      R
Sbjct: 58  MDGIEACAALRQKGYSGLVVMLTTFTEAAIQNKAASAGANAYYSKE------VSPAELAR 111

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            ILR       L    + + F    V       LT RE E L  ++ G T+ E+  ILG+
Sbjct: 112 RILR-------LTQNPEDSSFTPPPVPS-----LTPREREVLDLLARGLTAREMGDILGL 159

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +TV +Y+  +  K     R  A+  A R   +
Sbjct: 160 KPDTVRDYLKRLYGKLDAGNRIEALEQARRLGFL 193


>gi|300691836|ref|YP_003752831.1| transcription regulator protein [Ralstonia solanacearum PSI07]
 gi|299078896|emb|CBJ51557.1| putative transcription regulator protein [Ralstonia solanacearum
           PSI07]
          Length = 222

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 6/181 (3%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGM 126
            E   D+I +      LV  + L   D+   + +   RP      V             M
Sbjct: 35  DEGMFDAIEAHADAGLLVIGLPLPHLDELSAIGEIMHRPHAHHVVVLAESESPDIIRTLM 94

Query: 127 DNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   L L+   G+ I    L     L    +           K 
Sbjct: 95  QMGLSGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGAPSPSLAGDPQTDPKL 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A + 
Sbjct: 155 LGITPRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQR 214

Query: 244 N 244
            
Sbjct: 215 G 215


>gi|289705339|ref|ZP_06501735.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557854|gb|EFD51149.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 221

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  M +   D      +   E      L    F +    +         Y      
Sbjct: 48  PDVVLMDMQMPRMDGVEATARISAEAPGVRVLAITTFSSEQYLVPALRAGAAGYLVKDAP 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            A +   +  +     +       ++   + A   +              LT RE++ + 
Sbjct: 108 PAEVVDAIRRVHAGDAVFSAPVAADLVEAVTAAPEHAAPCPAEPLAPHERLTERELDVVR 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G ++ EIA  L ++  TV ++I  ++ K   + R   +  A R  +V
Sbjct: 168 ELAKGASNAEIAGALFLAEATVKSHIGKVLDKWQVRDRVQILIRAARAGLV 218


>gi|291614280|ref|YP_003524437.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584392|gb|ADE12050.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 219

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 8/176 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQ-----RPTELFCPVFHTLPENITPPAGMDNRY 130
            +  S  P  ++  +++   +   ++ +        ++     H   E I       +  
Sbjct: 44  RLAGSLSPTLILMDLSMPGTNGTESIREIKKRYPAIKIMVLTVHKAEEYIREALHAGSDG 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L        I  +     G+  L   + E  +          +    W     LT RE
Sbjct: 104 YVLKHATHDELILAIKSVLNGKTYLSPDIAEKVVNGYLDGGKGINPASAWDT---LTLRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I+EG+ +  IA  L +S  TV  + +++MRK      +   +YA+   +V
Sbjct: 161 REVLKLIAEGQGNKHIASYLCVSVKTVEKHRSNLMRKLNLHNAAVLTSYAIEKGMV 216


>gi|91223385|ref|ZP_01258650.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|91191471|gb|EAS77735.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
          Length = 214

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 151 GRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +L+  LW   + L     N   +      +  ELT RE + L  +  G ++ +IA  
Sbjct: 114 AEYVLKGGLWLPRMYLEKLVLNYRHANLSEEQQHDELTCREKQILELLVYGISNQQIASR 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAI 237
           L +S +TV ++I  + +K    +R  A+
Sbjct: 174 LFLSESTVKSHIYKLYKKLDVHSRHDAV 201


>gi|85706509|ref|ZP_01037602.1| two-component response regulator [Roseovarius sp. 217]
 gi|85668921|gb|EAQ23789.1| two-component response regulator [Roseovarius sp. 217]
          Length = 232

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   + +   I+  L  +        RD L       A  A +  +       DF LT 
Sbjct: 110 GYIPKSANAQEIKHALSRVISGEVAFPRDILARTLAEPAASAVVTATD---RDSDFGLTR 166

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE E +T +  G    +IA  L I+R TV  ++A+ ++KT  K+R  A+ +A+ N
Sbjct: 167 REAEIMTMLGGGAPVSDIADALDITRQTVRVHLANAIKKTGLKSREAAVRFAMEN 221


>gi|323496086|ref|ZP_08101146.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323318830|gb|EGA71781.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 214

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE+  L  +  G ++ +IA    IS  TV +++  I +K   K R  A A+A R 
Sbjct: 152 VDLTTREIHILRSLMTGASNSQIAEEQFISEFTVKSHLYQIFKKLCVKNRVQASAWA-RQ 210

Query: 244 NIV 246
           N++
Sbjct: 211 NLL 213


>gi|311897256|dbj|BAJ29664.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 219

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 46/107 (42%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V +   G  LL     +     L +    +   A +    +    +  +LT +E   L  
Sbjct: 107 VLKAIRGTDLLSAVRDVAAGKSLLDPVATSRVLARLRDGGEKEDERIAQLTKQERRILDL 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           I EG T+ +I   L ++  TV NY++S++ K   + R+ A AY  R 
Sbjct: 167 IGEGMTNRQIGNELHLAEKTVKNYVSSLLAKMGMERRTQAAAYVARR 213


>gi|312890682|ref|ZP_07750216.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311296848|gb|EFQ73983.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 305

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           K   LT +E E    + +G    +IA  L IS  TV+ +I +I  K     R      
Sbjct: 244 KRHNLTRKETEISGMVCQGMIYRDIADKLFISPRTVDKHIENIFEKVGVTNRVELARK 301


>gi|293400727|ref|ZP_06644872.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305753|gb|EFE46997.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 205

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 35/62 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + ++L  RE + ++ ++ G  + EIA  L +S  TV NY+++++ K   + R+    +  
Sbjct: 142 EQYDLNDREQQFISLVANGLNNKEIAETLFLSEGTVRNYLSNLLDKLGLRDRTQLAIFFY 201

Query: 242 RN 243
           ++
Sbjct: 202 QH 203


>gi|188496895|dbj|BAG32345.1| putative response regulator [Streptomyces kasugaensis]
          Length = 217

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 45/147 (30%), Gaps = 1/147 (0%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           +  +     L    F      +    G    +       A +   +         +    
Sbjct: 70  HRTVPDTRVLILTTFGEQQNVLRALTGGSAGFLLKDSAPAELMRAVRAAAAGDAYLSPGA 129

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
              + + +          +    +   LT RE+E L  + EG ++ +    + +S  TV 
Sbjct: 130 TRHV-VDSLASGRSAHRAEQARRRLETLTDRELEVLALLGEGLSNADAGQRIHMSEATVK 188

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            Y++ I+ K   + R  A   A    +
Sbjct: 189 TYVSRILAKLECENRVQAALLARDAGL 215


>gi|88801325|ref|ZP_01116853.1| putative nitrate/nitrite DNA-binding response regulator
           [Polaribacter irgensii 23-P]
 gi|88781983|gb|EAR13160.1| putative nitrate/nitrite DNA-binding response regulator
           [Polaribacter irgensii 23-P]
          Length = 221

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              +   + Y S     A I   +  +    +    D   E  LL +      ++ D+  
Sbjct: 97  EVLSLGASGYISKNNAGAHIVHAIKAVANGEQYFSSDIQKE--LLKSISGQKARTGDMPQ 154

Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              F+ LT RE   L  +S+  ++ EIA  + IS +TV +Y   ++RK   K   G   Y
Sbjct: 155 DLLFDSLTEREKNVLRLVSKELSTSEIAEKMNISHHTVESYRKKLLRKLNVKNSVGLAIY 214

Query: 240 AVRNNIV 246
           AV+ N+V
Sbjct: 215 AVKYNLV 221


>gi|296130130|ref|YP_003637380.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296021945|gb|ADG75181.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 208

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H      LT  E+  L  I EG ++ EIA  LG++  TV N+I S++ K   + R+   A
Sbjct: 133 HEDPTESLTPSELRVLDLIGEGMSNREIAERLGVAEKTVKNHITSLLAKMGLQRRTQVAA 192

Query: 239 Y-AVRNN 244
           + A R N
Sbjct: 193 WVASRKN 199


>gi|222082949|ref|YP_002542314.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727628|gb|ACM30717.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 219

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L   ++G+TS ++A  LGIS  T   +  ++MRK    + +   AYAVR
Sbjct: 154 PIPLTLRERQVLLLSAQGQTSRQMAERLGISPLTARKHRENLMRKLNLHSTAEVTAYAVR 213

Query: 243 NNI 245
             +
Sbjct: 214 LGL 216


>gi|253700593|ref|YP_003021782.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251775443|gb|ACT18024.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 216

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 15/220 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++  D    +   M AL E       ++V  +      +  +     P  +V  ++
Sbjct: 1   MGIRIVLADDHAMFREGMRALLEREED---MVVVAEAGDGVSVVEMTLEAMPDIVVLDLS 57

Query: 92  LSEK---DKYYNVLQRP--TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +      +    + ++     +     H   + I        +   L     +  I  + 
Sbjct: 58  MPGMKGIEAASIIHEKAPGVGIIILSMHNDRQYIIEALKQGVKSFILKEWAFQELITAVR 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                   L  RL +I +++ +               + LT RE +    +  GK   EI
Sbjct: 118 FVYNDSSYLSPRLSDI-IISGFADEGKNPC------KYSLTPREEQAYRLLVVGKNCKEI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  Y   IM+K      +  + +AV+  IV
Sbjct: 171 AYELNISSKTVETYRLKIMKKLNLSNIAQLVNHAVQEGIV 210


>gi|163738954|ref|ZP_02146367.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis BS107]
 gi|163741802|ref|ZP_02149192.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis 2.10]
 gi|161384975|gb|EDQ09354.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis 2.10]
 gi|161387759|gb|EDQ12115.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis BS107]
          Length = 239

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            ++ L+  Y       ++     +    L+ RE++ LT ++ G +  ++A  L IS +T+
Sbjct: 149 RDLILIGHYFNRKALEFEPDRSPEHVQPLSPREIDALTLLAMGYSRAQVAKTLTISEHTL 208

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             YI S   K      + AIA A+   ++
Sbjct: 209 RVYIESARFKLGAINTTHAIARALSLGLI 237


>gi|87200639|ref|YP_497896.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87136320|gb|ABD27062.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 207

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  +    +   LT  +++ L  + EGK + +IA  LG+S  TV  ++ +IMRK   + R
Sbjct: 132 EPIEQVRREVAGLTPTQLKVLLAVLEGKLNKQIAYDLGMSEATVKAHMTAIMRKLDVQNR 191

Query: 234 SGAIAYAVRNNI 245
           + A   A    +
Sbjct: 192 TQAALVARSLGL 203


>gi|320106448|ref|YP_004182038.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924969|gb|ADV82044.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 224

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +S G ++  +A  L IS +TV  ++ +I+ K     R  A+  A+R  I
Sbjct: 162 LSARELEVLRSVSRGWSNKIVADKLAISEDTVKGHMRTILAKLGANDRLDAVMTALRRGI 221

Query: 246 V 246
           +
Sbjct: 222 L 222


>gi|260770566|ref|ZP_05879499.1| nitrate/nitrite response regulator protein [Vibrio furnissii CIP
           102972]
 gi|260615904|gb|EEX41090.1| nitrate/nitrite response regulator protein [Vibrio furnissii CIP
           102972]
          Length = 67

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE + L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A  
Sbjct: 5   LTDREAQILGEVAKGYRNKQIADRLFISESTVKVHMKSLLKKLRVPSRTAATV 57


>gi|297563666|ref|YP_003682640.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848114|gb|ADH70134.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 223

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                   +          ELT +E + L  I EG T+ +I   L ++  TV NY+++++
Sbjct: 141 TGAMLERLRGAQAEPDPLAELTPQERQILDLIGEGMTNRQIGERLYLAEKTVKNYVSALL 200

Query: 226 RKTATKTRSGAIA 238
            K   K R+ A  
Sbjct: 201 SKLDLKRRTQAAV 213


>gi|196041201|ref|ZP_03108496.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
 gi|196027909|gb|EDX66521.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
          Length = 212

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 5/146 (3%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E  K+         L    F      +         Y     D  RIR  +  ++    +
Sbjct: 65  EATKFICEETETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTV 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +    L +I        +  K  +    K    T RE+  +  I++G ++ EI+  L IS
Sbjct: 125 MQDVVLDKIK--CNLMGS--KEDECKIDKSL-FTERELSIIALIAKGFSNKEISKQLFIS 179

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAY 239
             T+ NYI S++ KT  + R+    Y
Sbjct: 180 EGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|153806156|ref|ZP_01958824.1| hypothetical protein BACCAC_00411 [Bacteroides caccae ATCC 43185]
 gi|149130833|gb|EDM22039.1| hypothetical protein BACCAC_00411 [Bacteroides caccae ATCC 43185]
          Length = 203

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 4/167 (2%)

Query: 83  PFDLVRCMALSEKDKYYN-VLQRPTELFC--PVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           P   V+ + L   +  ++ +  +  E+    P F    +       +  +   L   V  
Sbjct: 30  PNAKVQPIELLSAEALHDCLRTQCPEMLIVNPTFGDYFDVNKFREEVSGKKIRLIALVTS 89

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                +L      I + D L  +    A   +M    D    +D  L+ RE E +  + +
Sbjct: 90  FVDASLLSKYDESISIFDDLETLSKKIAGLLDMSSEEDEVDSQD-ALSQREKEIVICVVK 148

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ EIA  L +S +TV  +  +I +K    + +G   YA+ N +V
Sbjct: 149 GMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIVNKLV 195


>gi|238064585|ref|ZP_04609294.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237886396|gb|EEP75224.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 256

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++G ++ +IA  L IS +     +AS++ K  +  R+ A+  A+++ 
Sbjct: 190 KLTSRESEALALLADGLSNKQIARRLSISDHGAKRLVASLLLKLGSPNRTMAVVTAIKSG 249

Query: 245 IV 246
           ++
Sbjct: 250 LI 251


>gi|89092871|ref|ZP_01165823.1| probable transcriptional regulator [Oceanospirillum sp. MED92]
 gi|89082896|gb|EAR62116.1| probable transcriptional regulator [Oceanospirillum sp. MED92]
          Length = 222

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R++  L  +S+G+++ +IA  L I+  TV  ++++I+RK     R  A+  A
Sbjct: 157 LTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRKLGVHNRIQAVLSA 211


>gi|325570815|ref|ZP_08146498.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325156325|gb|EGC68507.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 207

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                +         + RE   +  ++ GK + EIA  L +S  TV NYI+ ++ K   +
Sbjct: 134 QLMKNEPSIDNQASFSEREFAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLGLR 193

Query: 232 TRSGAIAYAVRN 243
            R+    Y  ++
Sbjct: 194 DRTQLAIYFYQH 205


>gi|212634670|ref|YP_002311195.1| regulatory protein LuxR:response regulator receiver [Shewanella
           piezotolerans WP3]
 gi|212556154|gb|ACJ28608.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella
           piezotolerans WP3]
          Length = 219

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A
Sbjct: 146 DQMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 237 IAYAVRN 243
           +  A++ 
Sbjct: 206 VI-ALQQ 211


>gi|154252488|ref|YP_001413312.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154156438|gb|ABS63655.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 214

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 57/172 (33%), Gaps = 13/172 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V     +         +RP  L   +     + +     M  R  +L   V      + L
Sbjct: 31  VENFDSAASFLASRATERPGCLVVDIRMPDMDGLELQEEMVRRQIALPVIVMTGHADVPL 90

Query: 147 LFPK--------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVEC 193
                             D L    +  A +A   +  D  + K  +     LT RE E 
Sbjct: 91  AVRAMKAGAVDFIEKPFNDELLLDSVARALEAGRQQRDDAGFAKAAKHRVAGLTQREREV 150

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +  GK +  IA  L IS  TV  + A++M K   +T S  +  A+   +
Sbjct: 151 LEHLVAGKANKMIAYDLDISPRTVEVHRANLMEKMQARTLSDLVRMALEAGV 202


>gi|114799870|ref|YP_759311.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114740044|gb|ABI78169.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC
           15444]
          Length = 876

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E+G+          +Y         LT RE + L  I +G ++ EI+  LG S  TV ++
Sbjct: 787 ELGVTRRLPRPRRGTYSAAREHPLGLTRREQDVLRLIVKGCSNREISEELGRSPRTVEHH 846

Query: 221 IASIMRKTATKTRSGAIAYAVRN 243
           +++++ K   + R  A+   V+N
Sbjct: 847 VSAVLSKLNAQNRM-AVMLRVQN 868


>gi|111026189|ref|YP_708472.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|40787202|gb|AAR90120.1| response regulator [Rhodococcus sp. DK17]
 gi|110825032|gb|ABH00314.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 209

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+     A    +
Sbjct: 148 LSSRELDVLKMIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDAGL 207

Query: 246 V 246
           +
Sbjct: 208 L 208


>gi|158315625|ref|YP_001508133.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111030|gb|ABW13227.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 217

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                 Y     D   +R  +  +     I   R     + LLA         +      
Sbjct: 98  CAGARGYLLKGADQDELRRAITAVAHGEAIFGSRVAARVLALLA---------HPPREVP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE + L  ++ G+ +  IA +L +S  TV N++++I  K     R+ AI  A  
Sbjct: 149 FPQLTDRERQVLDELARGRNNASIARVLNVSTRTVANHVSTIFAKLQLADRAEAIVRARE 208

Query: 243 NNI 245
             +
Sbjct: 209 AGL 211


>gi|326793852|ref|YP_004311672.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544616|gb|ADZ89836.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 217

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + LNR ++Q    V ++    D L  +  L   +            VG ++  L   +  
Sbjct: 1   MTLNRNNKQ----VINIMLVDDHLLVLDGLYARLDLEDY----INIVGTANNGLEALEKA 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           +E K D +V  D    ++  +  +++        +   L   + H     ++      + 
Sbjct: 53  KELKPD-VVLMDVSMPVLNGLEAAKRFNAEQPNTKI--LMLSMHHDREYILSLLQSGASG 109

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      V  +   +  ++  G          +     + A   +S          LT R
Sbjct: 110 YVLKDVSVNELITAIETVYQGGTYFSAGASQSL-----FVAVEKESDTQAEA----LTKR 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + L  ++ G+ + E+A  L IS  TV  +  +I  K    T +G   YA+   +
Sbjct: 161 ETDVLVELASGRANKEVARSLNISVRTVETHRQNIKNKLNIHTTAGLTKYAIDKGL 216


>gi|225872721|ref|YP_002754178.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794134|gb|ACO34224.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 203

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 54/173 (31%), Gaps = 22/173 (12%)

Query: 78  VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           V+   P  LV  + + E         V +R       +  T          +D     Y 
Sbjct: 45  VADHQPDVLVTDIEMPEMTGLTLAAEVRERYPSTRIIILTTFARPGYLRRALDAGAKGYL 104

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A +   +  +    R+I          LAA         D        LT RE 
Sbjct: 105 LKDRPAAELADAVRRVHQGLRVIDP-------QLAA---------DAWESGPDPLTERER 148

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + L    EGK S +IA  L +S  TV NY++  + K     R  A   A    
Sbjct: 149 QILWRAGEGKASQDIAAELHLSEGTVRNYLSEAISKLGAANRVDAARIARSKG 201


>gi|209886605|ref|YP_002290462.1| response regulator [Oligotropha carboxidovorans OM5]
 gi|209874801|gb|ACI94597.1| response regulator [Oligotropha carboxidovorans OM5]
          Length = 229

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 45/133 (33%), Gaps = 11/133 (8%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +          D    ++   + RI  G   L P    I +  L             
Sbjct: 107 FEAIAAGAQGYLLKDRHPDTMVQYLHRIDNGEPPLSPS---IAQRMLQHFA--------Q 155

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K           LT RE + L  +  G    E A +LG++ +TV  Y+  I RK    +
Sbjct: 156 VKPQTSDPESACSLTARETDVLRLLGRGLRVAETARVLGLTPHTVAGYVKVIYRKLNISS 215

Query: 233 RSGAIAYAVRNNI 245
           R+ A   A R  +
Sbjct: 216 RAEAAIEANRRGL 228


>gi|167586004|ref|ZP_02378392.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 281

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWIS 198
              ++LL       +   L    L+  ++A++ +             L+ R+ + + ++ 
Sbjct: 111 AFEMVLLGGHYIPPIALNLLPSLLVTRHEAHVQELAGTIPRRSATRVLSPRQAQIMRFVH 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 171 MGNTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 210


>gi|74318804|ref|YP_316544.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058299|gb|AAZ98739.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 210

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE+E +  + EG ++  IA  + +S NTV N++ +IM K   + R      A++
Sbjct: 148 LTAREMEIVDHVKEGLSNKAIAYKMTLSENTVRNHLRNIMEKLGLRNRVQVATLALK 204


>gi|121606652|ref|YP_983981.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595621|gb|ABM39060.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 232

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I+ G ++  IA  L I+  TV  ++  I+RK    +R  A  YA    +
Sbjct: 172 LSARERDVLGLIALGDSNKLIARKLDIAETTVKIHVQHILRKLQLTSRVQAAVYAANREL 231


>gi|307946995|ref|ZP_07662330.1| putative transcriptional regulatory protein SgaR [Roseibium sp.
           TrichSKD4]
 gi|307770659|gb|EFO29885.1| putative transcriptional regulatory protein SgaR [Roseibium sp.
           TrichSKD4]
          Length = 216

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
              L E    P  +   + +       +  G     P+   +  + L E     A    +
Sbjct: 75  IEVLREQSGAPRILVYGHETGDLPRKALAAGAAGFSPRNGPV--EGLLETCAAVAAGQMV 132

Query: 173 FKSYDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           F   DV   H      LT RE   L  +S+G ++ ++A   GIS NTV  +++++  K +
Sbjct: 133 FPFLDVRELHSDPIHLLTKREKALLEALSKGLSNRQLASEFGISANTVKFHLSNLYEKLS 192

Query: 230 TKTRSGAIAY 239
             +R+ A+A+
Sbjct: 193 VTSRTQAVAF 202


>gi|297158406|gb|ADI08118.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 202

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           AR+   ++   P   ++   R   +G      +    ++D+    D  LT REVE L  +
Sbjct: 97  ARVDGFVLKTAPPDDLVSAIRKVAVGERVLDASLAVTAWDLA---DNPLTPREVEVLRLV 153

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  + EIA  + ++  TV NY+ +I+ K   + R+ A+  A     +
Sbjct: 154 AQGAEATEIAAQVHLTAGTVRNYLTAIVTKLNARNRTDAVRIATEAGWI 202


>gi|295837594|ref|ZP_06824527.1| two-component system response regulator TcsR2 [Streptomyces sp.
           SPB74]
 gi|295826582|gb|EDY45254.2| two-component system response regulator TcsR2 [Streptomyces sp.
           SPB74]
          Length = 214

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 33/70 (47%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  L+ RE E L + ++G    EIA   G+S  TV NY++S + K   + R 
Sbjct: 143 AADAIAAGDSPLSAREAEVLEYAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRH 202

Query: 235 GAIAYAVRNN 244
            A+  A    
Sbjct: 203 AAVRAARSRG 212


>gi|288927582|ref|ZP_06421429.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330416|gb|EFC69000.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 198

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I +G  + EIA  L I   TV  +  +IM K   K+ S    YAV +  
Sbjct: 133 LSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 192

Query: 246 V 246
           V
Sbjct: 193 V 193


>gi|312195733|ref|YP_004015794.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227069|gb|ADP79924.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 404

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA  A   +  +       E+T RE+  L  +++G T+  IA  L IS  TV N++ S+ 
Sbjct: 225 AADHAGQPREAEQVAAT-LEITPREITVLVALADGLTAAGIARRLNISVRTVGNHLTSLY 283

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK     R  A+  A    ++
Sbjct: 284 RKLDAPDRLTAVLRAHHLGLL 304



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 50/170 (29%), Gaps = 33/170 (19%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENIT----PPAGMDNRYCSLTFDVARIRIGLMLL 147
            S +   +    R  E         P  IT       G+     +   +++   +G  L 
Sbjct: 221 SSGRAADHAGQPREAEQVAATLEITPREITVLVALADGLTAAGIARRLNISVRTVGNHLT 280

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFK---------------------------SYDVHW 180
               ++   DRL    +L A+   +                             S D   
Sbjct: 281 SLYRKLDAPDRL--TAVLRAHHLGLLPPRGLPRPSPSQVPRPRAPEADPRRTPLSPDRPA 338

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                LT RE +     + G  +  IA  L +S  TV N++  + RK   
Sbjct: 339 AAGTALTARERQVAGLAAAGLANRRIAGELALSVRTVENHLRLVYRKLGV 388


>gi|290956391|ref|YP_003487573.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645917|emb|CBG69008.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 218

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D    +   LT RE + L  + EG ++ EI   L IS  T   +++ I+       R 
Sbjct: 141 QADEARRRVTALTDRERDVLLLLREGSSNAEIGKALLISEGTAKTHVSRILSALGCTNRV 200

Query: 235 GAIAYAVRNNI 245
            A   A    I
Sbjct: 201 QAAILAHDAGI 211


>gi|260911715|ref|ZP_05918291.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634140|gb|EEX52254.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 206

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I +G  + EIA  L I   TV  +  +IM K   K+ S    YAV +  
Sbjct: 141 LSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRKNIMDKLGMKSVSALTIYAVMHGY 200

Query: 246 V 246
           V
Sbjct: 201 V 201


>gi|302555170|ref|ZP_07307512.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472788|gb|EFL35881.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 230

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 3/176 (1%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++    +V  D     V  +  +E+ +       P  +    FH   + +         +
Sbjct: 46  DRTHPDVVLMDLRMPTVDGLTATERLRARK--DAPQVIVLTTFHADEQVLRALRAGAAGF 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  A I   +  +     ++      ++   A               +   L  RE
Sbjct: 104 VLKDTPPAEILAAVRRVAAGDPVLSPTVTRQLMRHA-VGTAADTRRTRARDRMAALNDRE 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E    +  G ++ EIA  L +S  TV  +++ ++ K     R      A    ++
Sbjct: 163 REVAVGVGRGLSNAEIATGLFMSVATVKTHVSRVLAKLDLNNRVQIALLAYDAGLL 218


>gi|187923376|ref|YP_001895018.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714570|gb|ACD15794.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 292

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 77/228 (33%), Gaps = 22/228 (9%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +LN + E+R    + L  + D LAR             +      +     LLV W+ + 
Sbjct: 5   ILNSDAERRDGLKA-LLRQIDRLARFNEAQDWRQVERTLKRQRPDL-----LLVDWEDWM 58

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
                  + S +P      + ++      +       +   V   +P +  P        
Sbjct: 59  SIADVRHLLSHYP-----DLRVAVLSDQISPAAVRDLMDEGVLGVVPRDTDP-------- 105

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
           C +      + +G   + P    +      +I  +  +                 L+ R+
Sbjct: 106 CLIVRAFEMVLLGGHYVPPGALALDPPLPPDIT-IRPFDEKSPPPRRARLAN--VLSPRQ 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + +  +  G T+  IA  LGIS  TV  ++ SI ++     R+ A+A
Sbjct: 163 QQIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAVA 210


>gi|153820697|ref|ZP_01973364.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           B33]
 gi|126521740|gb|EAZ78963.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           B33]
          Length = 195

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +L+  +      +        + +        LT RE++ ++ +++G  + +IA  L I
Sbjct: 101 ALLKQAMQGEKAFSESVERYLLNREHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFI 160

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIA 238
           S +TV  ++ S+++K    +R+ A  
Sbjct: 161 SESTVKVHMKSLLKKLDVPSRTAATI 186


>gi|89890302|ref|ZP_01201812.1| putative transcriptional regulator, luxR family [Flavobacteria
           bacterium BBFL7]
 gi|89517217|gb|EAS19874.1| putative transcriptional regulator, luxR family [Flavobacteria
           bacterium BBFL7]
          Length = 230

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            W K   LT RE E L   ++GK++ E++ IL +S ++V+ +  +I +K      S  + 
Sbjct: 163 RWNKFQTLTKREKEILKLFAKGKSNKEVSEILILSVHSVHTHKKNIYQKLDISKASELVK 222

Query: 239 YAVRNNIV 246
            ++   I+
Sbjct: 223 ISLALEII 230


>gi|86360200|ref|YP_472089.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86284302|gb|ABC93362.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 223

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I YA+ + 
Sbjct: 149 PLTPRERDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIRYALDHG 208

Query: 245 I 245
           I
Sbjct: 209 I 209


>gi|83952460|ref|ZP_00961191.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius
           nubinhibens ISM]
 gi|83836133|gb|EAP75431.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius
           nubinhibens ISM]
          Length = 251

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 18/171 (10%)

Query: 93  SEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           +E  +       RP +   P    L  +     G+  +  ++       ++ L+ +    
Sbjct: 79  AEAQRRVTPFDWRPLDWQRPAARALRADA-VAHGIGPQGFTIPAHGPNGQLALLSITADR 137

Query: 152 RI-----ILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFE----------LTGREVECLT 195
                  + R   + + L A    +   S  D   G+D +          L+ RE + +T
Sbjct: 138 DDATWTDLTRANRFALILAAHALHHKIMSQPDAGLGEDPDSAAATPPAPRLSPRETDVIT 197

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G +  +IA  L IS +T+ +YI +   K        A+A A+   ++
Sbjct: 198 LLARGDSRGQIATKLAISEHTLRSYIETARHKLGAVNTPHAVARAIAMGMI 248


>gi|307320272|ref|ZP_07599691.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306894151|gb|EFN24918.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
          Length = 244

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ELT RE++ L  +S G  +  IA    +S +TV  ++ +I+ K     R+ A+A 
Sbjct: 182 ELTARELQILEMVSRGLQNKLIAAEFRLSEHTVKIHLHNIITKLGAHNRTEAVAR 236


>gi|296102698|ref|YP_003612844.1| two component transcriptional regulator, luxr family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057157|gb|ADF61895.1| two component transcriptional regulator, luxr family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 203

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM----FKSYDVHWGKDFELTGR 189
           T D  R      +     + +  D+L E   LA  ++      ++       +  +LT R
Sbjct: 87  TVDACRRAFRNGVFEFFTKPLDADKLIETVGLAFEESQRRFAGWQETSRVKARFAQLTAR 146

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           E E L  + +G ++ E+A  L +S  TV  + A+   K    +   AI 
Sbjct: 147 EHEVLGELMKGLSNKEVAARLNLSPRTVEAHRAAAFTKLGVGSLVQAIR 195


>gi|323529168|ref|YP_004231320.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323386170|gb|ADX58260.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 202

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 22/176 (12%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF---CPVFHTLPENITP---PAGMDNRY 130
           +V  + P  ++  + L   D    + +   E       V    PE++          N Y
Sbjct: 42  MVLREKPDLVIIDLDLPRLDGLSMIRRIREENLKICILVLSAKPEDVMAGYTRTAGANGY 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                +++ +   L  +         D                 +  V       L+ RE
Sbjct: 102 VGKGRNMSELITALKTILFGYDCFPADA----------------TGSVPENAFSSLSARE 145

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VE L  ++ G ++ +IA  L +S  TV+ Y + I  K    + +  I +A  + ++
Sbjct: 146 VEVLQHLARGASNRDIASRLYLSDKTVSTYKSRIQEKLGVSSLAALIEFAALHKLI 201


>gi|254491848|ref|ZP_05105027.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010]
 gi|224463326|gb|EEF79596.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010]
          Length = 168

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 10/153 (6%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           E  +     +   ++     H  P   +         Y +       +   +  +     
Sbjct: 23  EVLRRIRANREDAKVLMFSMHEDPVFASRAMQAGARGYITKNNAADHLVEAVEKVLDGKI 82

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +  D   ++ +L         + D       +L+ RE+E L  + EGK+ +EI+ +LGI
Sbjct: 83  YLSPDMAQQLAML---------NIDAGTSALSDLSRRELEILRLLGEGKSMNEISDVLGI 133

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV N +  I  K      +  + +A+ + +
Sbjct: 134 SYKTVANNLTQIKSKLDISKTAELMRFAISHGL 166


>gi|148985585|ref|ZP_01818774.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147922305|gb|EDK73426.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301800762|emb|CBW33411.1| response regulator protein [Streptococcus pneumoniae OXC141]
          Length = 199

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V   +   LT +E+  L  I+ G ++ EIA  L  S  T+ NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYFSNGTIRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|296332888|ref|ZP_06875348.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673234|ref|YP_003864906.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150168|gb|EFG91057.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411478|gb|ADM36597.1| two-component response regulator (paired with YdfH) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 213

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D +LT +EV  L  I++G  S  IA  LG+S  TV + + SI  K    +R+ A+  A
Sbjct: 144 SSDTQLTEKEVIVLKAIAKGFKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIA 203

Query: 241 VRNNIV 246
           ++  I+
Sbjct: 204 MQRGIL 209


>gi|157059879|dbj|BAF79686.1| putative LuxR family two-component system response regulator
           [Streptomyces kasugaensis]
          Length = 217

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 45/147 (30%), Gaps = 1/147 (0%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           +  +     L    F      +    G    +       A +   +         +    
Sbjct: 70  HRTVPDTRVLILTTFGEQQNVLRALTGGSAGFLLKDSAPAELMRAVRAAAAGDAYLSPGA 129

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
              + + +          +    +   LT RE+E L  + EG ++ +    + +S  TV 
Sbjct: 130 TRHV-VDSLASGRSAHRAEQARRRLETLTDRELEVLALLGEGLSNADAGQRIHMSEATVK 188

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            Y++ I+ K   + R  A   A    +
Sbjct: 189 TYVSRILAKLECENRVQAALLARDAGL 215


>gi|23006109|ref|ZP_00048587.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 56

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L W+S GK S +I  ILG+S  TV  ++  I  K   + R+ A A A R+
Sbjct: 2   LLWLSRGKASRDIGEILGLSPRTVTKHLEGIYAKLGVENRTAASAIAARH 51


>gi|331700012|ref|YP_004336251.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954701|gb|AEA28398.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 932

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEG 200
           L +L  +G       L  I   A          D    +      +T RE + L  ++EG
Sbjct: 827 LPVLEARGLDRSAAALRGIMRRAGVAVPRRGRGDAEVPQPLRALGVTSRETDVLLLVAEG 886

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             + EIA  L +S  TV  ++  ++ KT ++ R+  +A A R
Sbjct: 887 CGNREIAERLFLSPRTVEKHVERLLAKTGSQRRAELVAAATR 928


>gi|291447895|ref|ZP_06587285.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
 gi|291350842|gb|EFE77746.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 933

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 31/77 (40%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           D      LL   Q               +L+ RE E     S G T+ EIA  L +S  T
Sbjct: 850 DATRARALLRTRQPAKKGRPPGRPSHSDQLSPREAEVAQLASSGLTNREIAATLHLSPRT 909

Query: 217 VNNYIASIMRKTATKTR 233
           V  +IA  MRKT   +R
Sbjct: 910 VEQHIAGAMRKTGALSR 926


>gi|239944429|ref|ZP_04696366.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
 gi|239990886|ref|ZP_04711550.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           11379]
          Length = 936

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 31/77 (40%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           D      LL   Q               +L+ RE E     S G T+ EIA  L +S  T
Sbjct: 853 DATRARALLRTRQPAKKGRPPGRPSHSDQLSPREAEVAQLASSGLTNREIAATLHLSPRT 912

Query: 217 VNNYIASIMRKTATKTR 233
           V  +IA  MRKT   +R
Sbjct: 913 VEQHIAGAMRKTGALSR 929


>gi|269126099|ref|YP_003299469.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311057|gb|ACY97431.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 222

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 11/153 (7%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
             D    +  R  EL   V     ++      M+    +           +    P   +
Sbjct: 63  GLDLVRTLRTRDRELGAVVLGPPEDDEALFRAMEAEASA----------YVTTSAPAAEV 112

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +   R   +   +   A + ++       +  L+ RE + L  + EG++   IA  + +S
Sbjct: 113 VAAIRHAAVAPGSFTSAGLAQALARRRTGEL-LSPRERQVLALLMEGRSIAAIADSMHLS 171

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +T   Y A +  K     R+ A+  A+R  ++
Sbjct: 172 HSTAKTYAARLYEKLGAANRTQAVMTALRLGLI 204


>gi|254441153|ref|ZP_05054646.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198251231|gb|EDY75546.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 204

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  ++EGK++ EIA  L I   TV  ++ ++ RK     R+ A       N
Sbjct: 143 KLTERELQMLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALIGREAN 202

Query: 245 I 245
           +
Sbjct: 203 L 203


>gi|149280407|ref|ZP_01886527.1| DNA-binding response regulator, LuxR family protein [Pedobacter sp.
           BAL39]
 gi|149228821|gb|EDM34220.1| DNA-binding response regulator, LuxR family protein [Pedobacter sp.
           BAL39]
          Length = 211

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L   + G T+ ++A  L IS +TV ++  +++ K   K+ +  I  A+   
Sbjct: 148 KLTRREKEILHEAARGLTTAQMAETLFISPHTVESHRKNLIEKFGVKSIASVIKLALEYG 207

Query: 245 IV 246
           I+
Sbjct: 208 II 209


>gi|167031635|ref|YP_001666866.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166858123|gb|ABY96530.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 258

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 7/157 (4%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR-IGLML 146
             + L+ + +  +V++   E F   +    +     AG+  +  +L       R +G + 
Sbjct: 85  EAIMLTGRAEKQDVIRALREGFADYYQKPMDLDELLAGVRRQEEALLERQRNFRDLGGLN 144

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------DFELTGREVECLTWISEG 200
              +      D L++    A  Q    ++ DV   +        +L+ R++E    +S+G
Sbjct: 145 QRLQELADSVDELYQDLEKARGQGTHRRASDVEESESELPAAFEKLSPRQLEVARLVSKG 204

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           KT+ +IA  LGI+ NTV  Y++ ++R T    R+   
Sbjct: 205 KTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLA 241


>gi|325068150|ref|ZP_08126823.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Actinomyces oris
           K20]
          Length = 226

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           P  L+  + +   D      +   E     +      +  E I     M  R   +  DV
Sbjct: 47  PDILLMDIQMPGGDGLSAAERILAEDAGARIVFLTTFSDDEYIVRALKMGARGYLIKQDV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLA----------AYQANMFKSYDVHWGKDFELT 187
           A++   L  +     ++  + L     +           A +     + D+       LT
Sbjct: 107 AQVAPALRSVMAGVCVLEGEVLERSTTMGLGGRTGGRGPAEEGPGASAKDLRSTAFAALT 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE E +  ++EG  + E A  L +S  TV N+I++I+ K   + R+       R
Sbjct: 167 DREYEVVEAVAEGLDNAEAAARLFMSEGTVRNHISAILAKLGLRNRTQVAVMYYR 221


>gi|315103380|gb|EFT75356.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
          Length = 210

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G LA   A               LT RE + L   ++G ++ +IA  L +S  TV   ++
Sbjct: 128 GALAPAVATRLMVR--MRSPRTSLTAREFDVLEASAQGLSNAQIAEFLVVSEATVKTDLS 185

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K    +RS A+A A     +
Sbjct: 186 HIYTKLGVTSRSAAVAKARDIGFI 209


>gi|229085929|ref|ZP_04218153.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228697365|gb|EEL50126.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 189

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + ++ DRL EI L+   +   +      + +  ELT  E + L  +  G    EIA +L
Sbjct: 90  NKNVMPDRLLEI-LIKIKEGGYYFPMSTDYVE--ELTDSEKQILQLLCGGYKRKEIATML 146

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             S  T++N+I  I  K    +   A+   ++   +
Sbjct: 147 YASERTISNHIQHIFNKLDVSSALEAVTKGIQLGYI 182


>gi|226363982|ref|YP_002781764.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242471|dbj|BAH52819.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 372

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E LT ++ G T+  I+  L IS  TV +++  I +K    TR+   A
Sbjct: 309 LTAREREVLTLMATGATNATISRRLCISDGTVKSHVQRIFKKLGVSTRAEVAA 361


>gi|207724858|ref|YP_002255255.1| hypothetical protein RSMK03311 [Ralstonia solanacearum MolK2]
 gi|206590083|emb|CAQ37044.1| hypothetical protein RSMK03311 [Ralstonia solanacearum MolK2]
          Length = 74

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + W     LT R+ + L   + GK++ EIA  L IS  TV  ++  I+ +   + R+   
Sbjct: 1   MAWPHHPMLTTRQQDILREAAYGKSNAEIAQALNISVETVKTHVRQILMRLEARNRTQLA 60

Query: 238 AY 239
           A 
Sbjct: 61  AM 62


>gi|291300583|ref|YP_003511861.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569803|gb|ADD42768.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 222

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N  +          EL+ +E + L  I  G T+ +IA  + ++  TV NY++ ++ K   
Sbjct: 139 NRLRREQSQVDPLCELSQQERKVLELIGLGLTNRQIAGRMFLAEKTVKNYVSHLLAKLGM 198

Query: 231 KTRSGAIAYA--VRNN 244
            +R+ A   A  VR  
Sbjct: 199 TSRTQAAVLATEVRTG 214


>gi|237734801|ref|ZP_04565282.1| transcriptional regulator [Mollicutes bacterium D7]
 gi|229382129|gb|EEO32220.1| transcriptional regulator [Coprobacillus sp. D7]
          Length = 71

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  LT RE E    + + +++ +IA  LGIS  TV N+I+++++K    +R  A+
Sbjct: 6   NIILTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAV 60


>gi|149375232|ref|ZP_01893004.1| ATP-dependent transcriptional regulator [Marinobacter algicola
           DG893]
 gi|149360596|gb|EDM49048.1| ATP-dependent transcriptional regulator [Marinobacter algicola
           DG893]
          Length = 907

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  I++G  + +IA  +G++  TV  +I ++  K A  +R+ A+A A    
Sbjct: 845 PLSQRELEVLDLINQGLANKDIANTMGVAPTTVKAHIRNLYGKLAVGSRTEALAKARELR 904

Query: 245 IV 246
           ++
Sbjct: 905 LL 906


>gi|120611166|ref|YP_970844.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120589630|gb|ABM33070.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 229

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           D  LT R+ E L  + +G  +  IA  L +S +TV  ++ +I++K   + R   IA 
Sbjct: 164 DIGLTPRQGEILALVLDGLPNKPIASSLHLSEHTVKEHLTAILQKLEARNRVELIAK 220


>gi|126173037|ref|YP_001049186.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|153002219|ref|YP_001367900.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS185]
 gi|160876940|ref|YP_001556256.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|125996242|gb|ABN60317.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
 gi|151366837|gb|ABS09837.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
 gi|160862462|gb|ABX50996.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315269144|gb|ADT95997.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 209

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 16/137 (11%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           N     G+ +R   LT   A+  +  +L       +L+D   ++ L     A +      
Sbjct: 70  NAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVIS 129

Query: 179 HWGKDF---------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              +++                LT RE++ L  ++EG ++  I+  L IS  TV  ++ +
Sbjct: 130 DEVEEYLYELKDATDEQEWISSLTPRELQILEQLAEGLSNRMISEHLHISEGTVKVHVKN 189

Query: 224 IMRKTATKTRSG-AIAY 239
           ++RK   K+R+  A+ Y
Sbjct: 190 LLRKANAKSRTEMAVRY 206


>gi|299821741|ref|ZP_07053629.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817406|gb|EFI84642.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 213

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 8/155 (5%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGL 144
           VR   ++  +    +    TE    +  T  ++      + N      L  +  +I I  
Sbjct: 55  VRMPVMNGVEAAKRITAE-TETKVIILTTFDDDAYIIDAIRNGAEGYLLKNNDPKIIIAA 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +    + + I++  +WE  +  A   N  K+   H  K   LT RE + +  ++ G ++ 
Sbjct: 114 VRGVVQNQNIMQAEIWE-KVKVALSGNQTKA---HMAK-LPLTSREQDVIQAVASGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EIA  L IS  TV N I++++ K   + R+    +
Sbjct: 169 EIAKKLFISEGTVANNISALLNKLGLEHRTQLAIF 203


>gi|260904164|ref|ZP_05912486.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 222

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 49/168 (29%), Gaps = 14/168 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCP-------------VFHTLPENITPPAGMDNR 129
           P  ++  + +   D          +   P             V   L          D  
Sbjct: 49  PDLILMDIRMPVMDGLEATRALMAQTLHPEVLILTAFGTDEFVLQALRSGAAGYILKDTP 108

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
              L   V     G   L P     L  R           A+ + S  +       LT R
Sbjct: 109 PEDLIHAVRAAANGTRTLSPSAVESLLGR-DTTSATGVAGASNWNSVPIGPDPLEPLTTR 167

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E E    +++G T+ ++A  L +S  TV  ++A I  K    TR    
Sbjct: 168 EREIAEAVAQGMTNAQVARALFVSTATVKTHLARIFYKLDVSTRVQLA 215


>gi|41350132|gb|AAS00394.1| transcriptional regulator, LuxR family [Saccharopolyspora spinosa
           NRRL 18395]
          Length = 774

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 167 AYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           AY        +    K+    L+ RE E    + +G ++ +IA  L IS+ T   ++ +I
Sbjct: 689 AYARGKPPRTEAAPRKEPHTRLSRREREIAELVRQGMSNKQIASNLVISQRTAEAHVENI 748

Query: 225 MRKTATKTRSGAIAYAVR 242
           + K    +RS    +A+ 
Sbjct: 749 LVKLGFTSRSQIAVWAIE 766


>gi|329947896|ref|ZP_08294828.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523520|gb|EGF50618.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 203

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 22/162 (13%)

Query: 89  CMALSEKDKYYNVLQR------PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + +  +D      +          L    F                +         +  
Sbjct: 56  DIDMPGRDGLAATAEVVGSGVPCRCLIVTTFGRPGYLSRGMEAGAAGFIVKDTPPEELAE 115

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R+I  +   E  LL                    LT RE E L   + G  
Sbjct: 116 AIRKVHAGLRVIDPELAQESVLLG----------------PNPLTDREKEVLQAAATGAD 159

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + EIA  L +   TV NY++S + KT  + R+ A   A  N 
Sbjct: 160 AREIAARLHLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201


>gi|312888593|ref|ZP_07748162.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311298907|gb|EFQ76007.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 307

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           K F L+ RE + +  I +     EIA  L IS  TVN ++ +I  K    TRS  +  
Sbjct: 246 KRFALSPRENDVVNMICQRLRYKEIAEKLFISERTVNKHVQNIFNKVEVTTRSELVRK 303


>gi|298505405|gb|ADI84128.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 216

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 7/170 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            IV  D     +  +  + +        R   +     H+    I        +   L  
Sbjct: 50  DIVLMDLTMPEMNGIDATRRIAADYPSVR---VLALSMHSDRRFIEEALSAGAQGFLLKD 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                 +  +      R  L  R+  + ++  Y     +           LT RE E L 
Sbjct: 107 CAFDELVNAIHEVVADRFYLSPRITGV-VIKDYLGRRGRP---ESASSIRLTPREREVLQ 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I+EGK + E+A  L +S  TV +    IMRK  T + +    +A+R  +
Sbjct: 163 LIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSIADMTKFAIREGL 212


>gi|295836922|ref|ZP_06823855.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|295826276|gb|EFG64766.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 404

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           LT RE E    ++EG ++ EIA  L IS+ T + ++  I+ K    +R+ 
Sbjct: 347 LTRREREVAGLVAEGLSNREIAERLVISKRTADAHVEHILAKLGVASRAE 396


>gi|269127816|ref|YP_003301186.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268312774|gb|ACY99148.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 201

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D  LT RE+E L    EG +  +IA  L ++  TV N+++ I RK   + R  AI  
Sbjct: 135 AAADSPLTPRELEVLRLAGEGASVAQIADTLVLTIGTVRNHLSRINRKIGARNRVHAIRI 194

Query: 240 A 240
           A
Sbjct: 195 A 195


>gi|255535277|ref|YP_003095648.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
 gi|255341473|gb|ACU07586.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
          Length = 226

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        L+GRE+E L  I++  ++++I   L IS  TV  +  +I  KT TK+  G 
Sbjct: 153 DAKDDNKPVLSGRELEVLKLIAKEFSNEQIGEQLFISERTVEAHRRNIFMKTKTKSIVGL 212

Query: 237 IAYAVRNNIV 246
           I YA+   IV
Sbjct: 213 IKYAITEGIV 222


>gi|254477704|ref|ZP_05091090.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11]
 gi|214031947|gb|EEB72782.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11]
          Length = 261

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 24/218 (11%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP----- 105
              + +G    L+ +    Q       +++D P D +         +    +        
Sbjct: 44  RAADKIGVKSILVAQAVGIQ--GDIRWMNTDMPSDWIEEYLACGYVEVDPPVLNLSKQKG 101

Query: 106 -TELFCPVFHTLPENITPPAGMDNRYCSLTF----------DVARIRIGLMLLFPKGRII 154
              + C V H    +      +++   +  F               R   +         
Sbjct: 102 NMSVDCGVLHRGDASDKREWDLNHGLKAAGFGSLFCSCYKDATGYDRFVTLAYDGHHLED 161

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWG------KDFELTGREVECLTWISEGKTSDEIAV 208
                 E+ L +A   +  +   V  G      +   LT R+ E L+ ++EG  +  IA 
Sbjct: 162 QPASQVELQLFSALLVSTIERDTVAPGNGYQPVRPSPLTQRQREVLSLLAEGMMTARIAE 221

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LG+S   V+ + A+  +     TR  A+A A+    +
Sbjct: 222 TLGLSEAAVSLHFANARKALGASTREHALALALTRGFI 259


>gi|29829674|ref|NP_824308.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606783|dbj|BAC70843.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 204

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A    
Sbjct: 143 PLTDREREVLRAAADGATNAELATALHLSQGTVRNYLSTAIQKLAVRNRTEAVRTARDKG 202


>gi|145222280|ref|YP_001132958.1| response regulator receiver protein [Mycobacterium gilvum PYR-GCK]
 gi|145214766|gb|ABP44170.1| response regulator receiver protein [Mycobacterium gilvum PYR-GCK]
          Length = 385

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              G    +T RE++ LT    G T+ +IA  L IS  T  +++ S   K     R+   
Sbjct: 301 TRTGLPMGITPRELDALTLAVCGLTNGQIAAQLFISARTAGHHLESASAKLGAPNRAACA 360

Query: 238 AYAVRNNIV 246
           ++AV   ++
Sbjct: 361 SHAVALGLL 369


>gi|110636531|ref|YP_676738.1| two component LuxR family transcriptional regulator [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279212|gb|ABG57398.1| two component transcriptional regulator, LuxR family [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 215

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +S G ++  IA  L IS  TV  +  ++M+K      +  I  A+  NI
Sbjct: 155 LTKRELEVLKEVSMGLSTKLIADKLFISVRTVETHRINLMKKLDVHNSAELIKKAMDLNI 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|327480883|gb|AEA84193.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 219

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 48/106 (45%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           R    +L    R +L  + +    LA   A    S     G+  ++T RE+E    ++ G
Sbjct: 104 RCAPDVLVEAVRKVLAGQTFIEQPLATDLACQRPSRSPVKGRLADMTPREMEIFIMLARG 163

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + EIA  L IS  TV+N++A +  K    +++  +  A+   ++
Sbjct: 164 IGNREIAERLCISSKTVSNHLALLKSKLEVSSQAELVHLAIDQGLL 209


>gi|303234262|ref|ZP_07320907.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302494626|gb|EFL54387.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 208

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 35/73 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
               +   K  ELT RE+E L  ++ G  +D+IA  LGI  NTV  +I  ++ KT   +R
Sbjct: 132 PEVKLGMAKSTELTPREIEVLRLLTTGAGNDQIAEELGILLNTVKTHIQHMLDKTEFTSR 191

Query: 234 SGAIAYAVRNNIV 246
           +     A     V
Sbjct: 192 TQLAIQARITGFV 204


>gi|295396479|ref|ZP_06806640.1| possible ATP-dependent transcription regulator LuxR [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294970671|gb|EFG46585.1| possible ATP-dependent transcription regulator LuxR [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 851

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 165 LAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           +A    ++ ++ D      +  +++ RE + L  ++ GK++ +IA  + +  NTV  ++ 
Sbjct: 767 IAGTHIDVIETTDEAESHTQSLQMSERETQILQLLASGKSNRQIADSVFLGVNTVKWHLK 826

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++ R+     R   +  A +  +V
Sbjct: 827 NLYRRLGVSNRDDCVKVARQRGMV 850


>gi|282856682|ref|ZP_06265948.1| two-component response regulator [Pyramidobacter piscolens W5455]
 gi|282585447|gb|EFB90749.1| two-component response regulator [Pyramidobacter piscolens W5455]
          Length = 203

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E LT I +G +  EIA  L I+ N+V  + ++I+ KT  ++ +    +AV N 
Sbjct: 138 ELTRREREVLTLICDGLSRREIAERLNITINSVKTHFSNILSKTGYESVAKLAIFAVSNG 197

Query: 245 IV 246
            +
Sbjct: 198 FI 199


>gi|217974804|ref|YP_002359555.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217499939|gb|ACK48132.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 209

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           N     G+ +R   LT   A+  +  +L       +L+D   ++ L     A +      
Sbjct: 70  NAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVIS 129

Query: 179 HWGKDF---------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              +++                LT RE++ L  ++EG ++  I+  L IS  TV  ++ +
Sbjct: 130 DEVEEYLYELKDATDEQEWISSLTPRELQILEQLAEGLSNRMISEHLHISEGTVKVHVKN 189

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           ++RK   K+R+      + +
Sbjct: 190 LLRKANAKSRTEMAVRYLNH 209


>gi|171058257|ref|YP_001790606.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775702|gb|ACB33841.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 219

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 2/157 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI--GLMLLF 148
                D    +     E+   V        T  A +D          ARI      + + 
Sbjct: 59  DSQGLDSLQRLRSVVPEVPIVVMSADERPETILAAIDQGAAGFIPKTARIGAIESALRVV 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G I L   ++                     +   LT R+++ L  ++ G+++ +I+ 
Sbjct: 119 LDGGIFLPQGIYRSIAPPLADGPEVDEAQAALMQSLGLTPRQLDVLRLMALGQSNKQISR 178

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L ++ +T+  ++A + R+    +RS  +  A R  +
Sbjct: 179 ALSVAESTIKTHVAVVFRRLDVTSRSQVMVAAARMGL 215


>gi|167622824|ref|YP_001673118.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167352846|gb|ABZ75459.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 211

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
            LT RE+E L  ++EG+++  +A  L IS  TV  ++ +++RK   K+R+  A+ Y
Sbjct: 151 NLTPRELEILQHLAEGQSNRIVAEQLHISEGTVKVHVKNLLRKANAKSRTEMAVRY 206


>gi|121535101|ref|ZP_01666918.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
 gi|121306351|gb|EAX47276.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
          Length = 190

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L ++  G +  EIA +L IS  TV+ +   IM K     +S  + YA+++ +
Sbjct: 124 LSFREREVLKYMVRGYSLSEIAKMLCISVKTVDTHKTRIMNKLGYTEKSQLVEYALKHGL 183

Query: 246 V 246
           +
Sbjct: 184 L 184


>gi|15827939|ref|NP_302202.1| transcriptional regulator [Mycobacterium leprae TN]
 gi|221230416|ref|YP_002503832.1| putative transcriptional regulator [Mycobacterium leprae Br4923]
 gi|13093492|emb|CAC30706.1| possible transcriptional regulator [Mycobacterium leprae]
 gi|219933523|emb|CAR71848.1| possible transcriptional regulator [Mycobacterium leprae Br4923]
          Length = 1106

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E   +  +SEG  + +IA  L +S  TV+ ++  I  K    +R   +  A R+N
Sbjct: 1048 LTPAEHNVIRLVSEGLDTKDIAARLFVSVRTVHTHLTRIYSKLGLTSRVQLVQEAARHN 1106


>gi|186687224|ref|YP_001870367.1| two component LuxR family transcriptional regulator [Nostoc
           punctiforme PCC 73102]
 gi|186469527|gb|ACC85326.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 217

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+  E++ ++ +++G ++  IA  L I+ +TV  +I  I  K   K R  A+  A +
Sbjct: 146 QDHLSATEMQIISLMADGSSNKLIAERLFITESTVKGHINKIFAKLDVKDRVNALIEASK 205

Query: 243 NNIV 246
              +
Sbjct: 206 LGYI 209


>gi|261346511|ref|ZP_05974155.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM
           4541]
 gi|282565504|gb|EFB71039.1| transcriptional regulator, LuxR family [Providencia rustigianii DSM
           4541]
          Length = 248

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSY------DVHWGKDFELTGREVECLTWIS 198
           +L     R  L++    I  +A    ++  +              F LT RE E +  I 
Sbjct: 141 LLSEESKRAPLKEAFDIIRSIARLHKDVVPNSVSSDYRHTDLQTCFGLTPRECEVVELIL 200

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           EGK S +IA  L IS  TV N+  +I +K    +
Sbjct: 201 EGKGSPQIADTLFISLGTVKNHRKNIYQKLGIGS 234


>gi|261408228|ref|YP_003244469.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261284691|gb|ACX66662.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 202

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  ++ G ++ EIA  L IS  TV N ++ I+ K   + R+    Y  R +
Sbjct: 142 DLTPRENDILELVALGCSNREIAEQLFISEGTVRNTLSIILDKLELRDRTQLAIYYWRQS 201

Query: 245 I 245
           +
Sbjct: 202 L 202


>gi|148555161|ref|YP_001262743.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148500351|gb|ABQ68605.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 899

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
               G+ +++ +L   V       + LF   +     RL +    A              
Sbjct: 778 EGLIGIVSQFGALLPPVLAACEESLHLFEPAQRSTVARLRQTTPAARRGGTAIPP----A 833

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D  +T RE++ L  +++G +S E+A  LG++ +T+  +  +I RK    TRS AI+ A
Sbjct: 834 ASDIIVTPREIDVLRGLADGLSSKEMARSLGVAESTIKTHRINIYRKLNVATRSRAISAA 893

Query: 241 VRNNIV 246
               ++
Sbjct: 894 RNLRLI 899


>gi|289524366|ref|ZP_06441220.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502394|gb|EFD23558.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 167

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + +L+ RE+E L  + +G+ +  IA    IS++TV+ +  +IM K      +    Y
Sbjct: 95  LAAENKLSPREMEVLRLLVKGEHTKSIASKPSISKSTVDTHRKNIMEKLNCANIADLTRY 154

Query: 240 AVRNNIV 246
           A+R  +V
Sbjct: 155 AIREGLV 161


>gi|256421934|ref|YP_003122587.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036842|gb|ACU60386.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 222

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 6/171 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V +D    L+  +  +      N   +   +   +F      +         Y     
Sbjct: 52  DVVMTDLKMPLMDGITATRALLQRNPDIKI--IALSMFDEEELIVEMLEAGAKGYLLKNA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   I   +  ++       R     +   A    + F             T RE E + 
Sbjct: 110 DKQEIIEAINSVYEDHIFYCRQTSARLA--AMIVKSRFNPP--RENNAVTFTDREKEIIR 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I +  T+ EI   + +S+ TV  +   I+ K   K  +G + +A++NN++
Sbjct: 166 LICQQFTAQEIGDKIFLSKRTVEGHRTRILEKMNVKNTAGVVVFALKNNLI 216


>gi|297202175|ref|ZP_06919572.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713613|gb|EDY57647.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 205

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A    
Sbjct: 144 PLTDREREVLRAAADGSTNAELAQTLHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKG 203


>gi|186473154|ref|YP_001860496.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184195486|gb|ACC73450.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 209

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 22/177 (12%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPE---NITPPAGMDNR 129
            +V S  P   V  + L   D    + +   +   +   V    P+   ++       N 
Sbjct: 48  RMVLSLKPDLAVLDLDLPSLDGLSMIRRIRAQDDSMRILVLSAKPDHVMSLHTQQAGANG 107

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y S   ++  +      +                LL          +    G    L+ R
Sbjct: 108 YVSKGRELTEMLTAARTV----------------LLGFDCFPANAPHANKAGGLDVLSPR 151

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L +++ G ++ EIA  L +S  TV+ Y   +  K    + +  I +A  + ++
Sbjct: 152 EMEVLQYLARGVSNKEIASRLFLSDKTVSTYKTRLCEKLGLSSLAALIEFATLHKLI 208


>gi|330972050|gb|EGH72116.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 220

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 3/140 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +        P+ I     +  +   L    A      +         L   +    +  A
Sbjct: 79  VLILSMQNDPDMIMRALDIGAQGYLLKDTTAAELEQALGALRGNERYLSPAIAHTVIERA 138

Query: 168 YQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +    +S      K+ + LT R++E L  I  GK++ EIA  LG+S  T+  + A +M+
Sbjct: 139 LRGK--RSDRARSAKERYHLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMK 196

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +      +G + + VR  I+
Sbjct: 197 RLQIFDVAGLVLFCVRERII 216


>gi|111022297|ref|YP_705269.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110821827|gb|ABG97111.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1084

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 1/107 (0%)

Query: 138  ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             R    ++          R R  ++G  A+Y            G    LT RE +    I
Sbjct: 976  ERSARRMLTEHAFEEARQRGRAMDLGSAASYALEEDPRKPTPPG-PATLTKREQQVAELI 1034

Query: 198  SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +EG T+  IA  L IS  T   ++  I+ K    +R+   A+ V   
Sbjct: 1035 AEGLTNKAIAARLVISHRTAQGHVEHILTKLGFTSRAQVAAWVVEER 1081


>gi|99080669|ref|YP_612823.1| two component LuxR family transcriptional regulator [Ruegeria sp.
           TM1040]
 gi|99036949|gb|ABF63561.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           TM1040]
          Length = 204

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 68/202 (33%), Gaps = 20/202 (9%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV-RCMALSEKDKYYNVLQRPTELF 109
           A+  Y+ A   + V+         D+ + +D  FDLV     +   +    + +      
Sbjct: 15  AIAAYLTADGEIDVKAVCDAHAAFDA-MQTDVSFDLVILDYQMPGMNSIEVLKRALVANG 73

Query: 110 CPVFHTLPENITPPAGMDN------RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
                 L  + +P    +        +   T     +   +  +      I  D L E  
Sbjct: 74  GKGVAILSGSGSPGLAKEVLDAGAVGFVPKTISGLTLLNAVKFMCAGEIFIPHDLLREST 133

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +     A      D        L+ R+++ L  +   KT+ EIA  L +   T+  ++ +
Sbjct: 134 V-----APTHPLLD-------GLSPRQIQVLEGVCNAKTNKEIARELELEEVTIKFHVRT 181

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
           + RK   + R+ A   A    +
Sbjct: 182 LCRKLEVQNRTQAALAAKSAGL 203


>gi|327406023|ref|YP_004346861.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327321531|gb|AEA46023.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 205

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 172 MFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           + +S++       +L + RE E L  +S+G    EIA  L I+ +TV  ++  I  K   
Sbjct: 133 VLQSFNKAENPVLQLISKREREVLDLLSKGYLYKEIADKLNITLSTVKRHLNHIYEKLQV 192

Query: 231 KTRSGAI 237
           + ++ A+
Sbjct: 193 QNKTEAV 199


>gi|295676073|ref|YP_003604597.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
 gi|295435916|gb|ADG15086.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
          Length = 293

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
             V   + E +      D   C +   +  + +G   + P    I      +  +    +
Sbjct: 85  ALVRALMDEGVLGVVPRDTDPCLIVRALEMVLLGGHYVPPGALAIDPPLPTDTAIRTFDE 144

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +     +        L+ R+ + +  +  G T+  IA  LGIS  TV  ++ SI ++  
Sbjct: 145 ESPPPRRNKLSS---GLSPRQEQIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLG 201

Query: 230 TKTRSGAIA 238
              R+ A+A
Sbjct: 202 APNRAAAVA 210


>gi|281419799|ref|ZP_06250798.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
 gi|281406175|gb|EFB36855.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
          Length = 209

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ +++GK + EIA  L I   TV  +   I  K   K+ S    YAV +  
Sbjct: 144 LSDREIEVLSLVAQGKINKEIADQLCIGLTTVITHRKKIQEKLGLKSVSSLTIYAVMHGF 203

Query: 246 V 246
           V
Sbjct: 204 V 204


>gi|254438204|ref|ZP_05051698.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198253650|gb|EDY77964.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 204

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  ++EGK++ EIA  L I   TV  ++ ++ RK     R+ A       N
Sbjct: 143 KLTERELQMLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALIGREAN 202

Query: 245 I 245
           +
Sbjct: 203 L 203


>gi|163755235|ref|ZP_02162355.1| DNA-binding response regulator, LuxR family protein [Kordia
           algicida OT-1]
 gi|161324655|gb|EDP95984.1| DNA-binding response regulator, LuxR family protein [Kordia
           algicida OT-1]
          Length = 226

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I    T++EIA  L IS  TV  +  +++ KT +K  +G + Y ++  +
Sbjct: 160 LTKREKEILELICNQYTTNEIAEKLFISPRTVEGHRNNLLLKTESKNVAGLVIYGIQKKL 219

Query: 246 V 246
           +
Sbjct: 220 I 220


>gi|78357716|ref|YP_389165.1| two component LuxR family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220121|gb|ABB39470.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 215

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 61/177 (34%), Gaps = 13/177 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPP----AGMDNRY 130
           +V    P  ++  + +   D    + +  R       +  T                + Y
Sbjct: 43  VVERCAPDVVLMDIGMPRMDGADAIREIKRRFPRTKVIALTAHNKSALIFRTLHAGADGY 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGR 189
              T +   +   +  +    R I  D      +  +   ++  S  + +    + ++ R
Sbjct: 103 MLKTGNCETLVGAIQTVLEGRRYISPD------ISQSLIDSLAGSDPMDFANPIDTISVR 156

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  I+ G  + EIA  L IS  TV  + AS+ RK    + +     ++   ++
Sbjct: 157 EKQVLKLIARGMGNKEIAAELCISHKTVEKHKASLKRKLRVNSNAEMATLSMEYGLL 213


>gi|326385167|ref|ZP_08206835.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196132|gb|EGD53338.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 212

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G++  LT RE E L  I +G ++ +I    G+S N+V  YI +  R+    TR+ A+ +
Sbjct: 139 PGREEGLTQREAEILALIVQGLSNADIVEQTGLSINSVKTYIRTCYRRIGVNTRAQAVLW 198

Query: 240 AVRNNIV 246
            V +  V
Sbjct: 199 GVNHGFV 205


>gi|300868966|ref|ZP_07113570.1| GAF modulated transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
 gi|300333033|emb|CBN58762.1| GAF modulated transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
          Length = 233

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 20/218 (9%)

Query: 32  LLARMIPLDCTVSWTMRM-YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           L   +           R+   ++EY  A    L  +D  + +  D         +L   M
Sbjct: 7   LFQILTQAKDEQELRSRICAEVSEYFTAKRSGLFFFDAPKRRIRDR--------NLQNLM 58

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL---PENITPPAGMDNRYCSLTFD-VARIRIGLML 146
            L+   ++  VL+   E   PV   L   P+         + +  +T   V + ++   +
Sbjct: 59  ELALSTEHNPVLRYLVERHTPVHEALVVSPKAWQLICPRADHWHVMTGPIVNQGQLVGAV 118

Query: 147 LFPKGRII---LRDRLWEIGLLAAYQAN---MFKSYDVHWGKDFELTGREVECLTWISEG 200
            F + R +       L ++  L  + +      +S       +  LT RE++    +++G
Sbjct: 119 GFTRDRSMGSFDTQNLMDLSALCLHLSTWVARVRSPHQLLHTN-RLTSRELQIAELVAQG 177

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            T+ EI   L I+ N+V   +  + RK    +R+  +A
Sbjct: 178 LTNAEIGERLWITENSVKQALKRMFRKLEVSSRAQMVA 215


>gi|288923606|ref|ZP_06417715.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288345043|gb|EFC79463.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 152

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +    G  +   +     A     L++L P+           I LLA +  ++  +    
Sbjct: 1   MLRQLGTQDNIVATIMTPAGRAGLLLVLTPRPGTFTSADRDVIALLARHIGHLLHARLPR 60

Query: 180 WGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                 L   + RE + +  ++ G ++ +IA  L ++ +TV +++ ++MR T    R+  
Sbjct: 61  TPAPTALAALSHRERDVIELVASGHSNQQIADTLDVTVHTVKHHVTNVMRTTQCANRTQL 120

Query: 237 I 237
            
Sbjct: 121 A 121


>gi|89893086|ref|YP_516573.1| hypothetical protein DSY0340 [Desulfitobacterium hafniense Y51]
 gi|89332534|dbj|BAE82129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 234

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 5/139 (3%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           ++     H   E I            L        I  +     G   L   + +  L+ 
Sbjct: 97  QILILTMHDDEEYIFKILQAGASGYILKSAYDNDLINAIRTIYHGNAYLGPSITKT-LIH 155

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +        +       +LT RE   L+ ++ G ++ EIA  L +S  TV +Y + I  
Sbjct: 156 EFAQRSLHGNESG----TDLTVREQNFLSLMAMGYSNKEIAEELSVSVKTVESYRSKIKD 211

Query: 227 KTATKTRSGAIAYAVRNNI 245
           K   KTR   + YA++  +
Sbjct: 212 KLNLKTRHELVRYALKKGL 230


>gi|126174023|ref|YP_001050172.1| response regulator receiver protein [Shewanella baltica OS155]
 gi|153000313|ref|YP_001365994.1| response regulator receiver protein [Shewanella baltica OS185]
 gi|160874947|ref|YP_001554263.1| LuxR family transcriptional regulator [Shewanella baltica OS195]
 gi|217973656|ref|YP_002358407.1| LuxR family transcriptional regulator [Shewanella baltica OS223]
 gi|304411428|ref|ZP_07393042.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|307305250|ref|ZP_07584998.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
 gi|125997228|gb|ABN61303.1| transcriptional regulator, LuxR family [Shewanella baltica OS155]
 gi|151364931|gb|ABS07931.1| response regulator receiver protein [Shewanella baltica OS185]
 gi|160860469|gb|ABX49003.1| transcriptional regulator, LuxR family [Shewanella baltica OS195]
 gi|217498791|gb|ACK46984.1| transcriptional regulator, LuxR family [Shewanella baltica OS223]
 gi|304350283|gb|EFM14687.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|306911553|gb|EFN41978.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
 gi|315267183|gb|ADT94036.1| transcriptional regulator, LuxR family [Shewanella baltica OS678]
          Length = 211

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE E L  +  G T+ +IA  L +S +T+  ++  + RK    +R  AIA+A
Sbjct: 147 PLTIREREVLQALLTGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWA 202


>gi|240171514|ref|ZP_04750173.1| two-component transcriptional regulatory protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 218

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA      +    H      LT +E   L  +SEG T+ +IA  + ++  TV NY++ ++
Sbjct: 130 AAALMAKLRGGAEHHDPLSGLTEQERTLLGHLSEGLTNRQIAARMFLAEKTVKNYVSRLL 189

Query: 226 RKTATKTRSGAIAYAVRNN 244
            K   + R+ A  +A R  
Sbjct: 190 AKLGMERRTQAAVFASRLG 208


>gi|256819971|ref|YP_003141250.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
 gi|256581554|gb|ACU92689.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
          Length = 218

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L    EG  S EI+  L IS +TVN +  +I+ K        AI 
Sbjct: 165 LTPREREILALAKEGMFSKEISEKLNISVHTVNRHRQNILEKLQVGNIIEAIR 217


>gi|256824328|ref|YP_003148288.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687721|gb|ACV05523.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 244

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 2/130 (1%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           +  L    +     D     L   +  +  G  ++ P     L +R   +  L    A++
Sbjct: 97  YAALEAGASGFLLKDAGPEELLAAIRAVASGDAVVAPSTTKRLLERF--VPTLTPEVADV 154

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               +        LT RE E    ++ G ++ EIA  L ++  T+  +I  ++ K   + 
Sbjct: 155 ASPAEQQEYLREVLTEREYEVFEAVAAGLSNTEIAKELFVAEATIKTHIGRLLFKLGCRD 214

Query: 233 RSGAIAYAVR 242
           R   +  A  
Sbjct: 215 RVQLVITAYE 224


>gi|224536867|ref|ZP_03677406.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521533|gb|EEF90638.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 215

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ISEG  S+EIA  L IS NTV  +   IM K   K  S  +  A+++ +
Sbjct: 153 LSKREQEVLKCISEGLKSNEIATKLYISVNTVEFHRKQIMLKLEAKNASDMLIKAIKSGV 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|53715925|ref|YP_106553.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|121597681|ref|YP_990662.1| LuxR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124382610|ref|YP_001025150.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126447294|ref|YP_001079501.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|238562340|ref|ZP_00440625.2| transcriptional regulator, LuxR family [Burkholderia mallei GB8
           horse 4]
 gi|254176191|ref|ZP_04882849.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           10399]
 gi|254203568|ref|ZP_04909929.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH]
 gi|254205440|ref|ZP_04911793.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU]
 gi|52421895|gb|AAU45465.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           23344]
 gi|121225479|gb|ABM49010.1| transcriptional regulator, LuxR family [Burkholderia mallei SAVP1]
 gi|126240148|gb|ABO03260.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC
           10247]
 gi|147745807|gb|EDK52886.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH]
 gi|147755026|gb|EDK62090.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU]
 gi|160697233|gb|EDP87203.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           10399]
 gi|238522869|gb|EEP86311.1| transcriptional regulator, LuxR family [Burkholderia mallei GB8
           horse 4]
 gi|261826888|gb|ABM99117.2| transcriptional regulator, LuxR family [Burkholderia mallei NCTC
           10229]
          Length = 917

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 837 AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 896

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 897 ASSRKHAVRRALVLGLL 913


>gi|226312417|ref|YP_002772311.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095365|dbj|BAH43807.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 214

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I  G ++ E+A  L IS  TV N+  +IM+K    ++   I YA++N  
Sbjct: 150 LTLREKELVRLIVLGYSNKEMADKLLISVKTVENHKTNIMQKLGLDSKHQLIQYAIKNRY 209

Query: 246 V 246
           +
Sbjct: 210 L 210


>gi|157960657|ref|YP_001500691.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157845657|gb|ABV86156.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 209

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
            LT RE+E L  ++EG+++  +A  L IS  TV  ++ +++RK   K+R+  A+ Y
Sbjct: 151 NLTPRELEILQHLAEGQSNRIVAEQLHISEGTVKVHVKNLLRKANAKSRTEMAVRY 206


>gi|72163349|ref|YP_291006.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71917081|gb|AAZ56983.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 221

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                   +           LT +E + L  I EG T+ +I   L ++  TV NY++S++
Sbjct: 138 TGRMLERLRQNGGKPDPLAALTPQERQILDLIGEGLTNRQIGERLFLAEKTVKNYVSSLL 197

Query: 226 RKTATKTRSGAIA 238
            K   K R+ A  
Sbjct: 198 GKLDLKRRTQAAV 210


>gi|24374189|ref|NP_718232.1| LuxR family DNA-binding response regulator [Shewanella oneidensis
           MR-1]
 gi|24348702|gb|AAN55676.1|AE015706_4 DNA-binding response regulator, LuxR family [Shewanella oneidensis
           MR-1]
          Length = 220

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D    K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+
Sbjct: 144 STDKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRT 203

Query: 235 GAIA 238
            A+ 
Sbjct: 204 QAVI 207


>gi|304410764|ref|ZP_07392382.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307304859|ref|ZP_07584609.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304351248|gb|EFM15648.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306912261|gb|EFN42685.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 209

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 16/137 (11%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           N     G+ +R   LT   A+  +  +L       +L+D   ++ L     A +      
Sbjct: 70  NAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKNAMLGHRVIS 129

Query: 179 HWGKDF---------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              +++                LT RE++ L  ++EG ++  I+  L IS  TV  ++ +
Sbjct: 130 DEVEEYLYELKDATDEQEWISSLTPRELQILEQLAEGLSNRMISEHLHISEGTVKVHVKN 189

Query: 224 IMRKTATKTRSG-AIAY 239
           ++RK   K+R+  A+ Y
Sbjct: 190 LLRKANAKSRTEMAVRY 206


>gi|300697452|ref|YP_003748113.1| Hrp family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074176|emb|CBJ53721.1| transcription regulator for hrp genes expression [Ralstonia
           solanacearum CFBP2957]
          Length = 197

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L A +       D    +   LT R+ + L   + GK++ EIA  L IS  TV +++  I
Sbjct: 110 LEARRHGCAPRPDT-GARLSALTPRQHDILREAAHGKSNVEIAQTLHISVETVKSHVRQI 168

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + +   + R+   A   + N++
Sbjct: 169 LMRLEARNRTELAAI-YQQNVI 189


>gi|296101648|ref|YP_003611794.1| two-component system, NarL family, response regulator, fimbrial Z
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056107|gb|ADF60845.1| two-component system, NarL family, response regulator, fimbrial Z
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 210

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F L++ +    KD     L   +E F                  N + S   D+  I   
Sbjct: 65  FALLKRIRNLNKDIKVLFLSSKSESF--------YAGRAIRAGANGFVSKRKDLGEIYNA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++         + L  I  L + +             D  L+ REV  L +++ G ++
Sbjct: 117 VEMILMGYSFFPSETLNFINHLGSGKG---------MASDMPLSNREVTVLRYLANGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  T++ + ++I  K   ++    I YA  + ++
Sbjct: 168 KEIAEQLLLSNKTISAHKSNIYSKLGVQSIVELIDYAKAHELL 210


>gi|270264144|ref|ZP_06192411.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041793|gb|EFA14890.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 247

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              L+  YQ+     Y          + RE + L   S GK+  EIA+ILG+   T+  +
Sbjct: 153 HEKLITDYQSVSSARYFERINDKEIFSDRENDVLYLASMGKSYPEIALILGVKLTTIKYH 212

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           I + ++K        AI   V   ++
Sbjct: 213 IGNAVKKLGVTNAKHAIRLGVELQLI 238


>gi|229491816|ref|ZP_04385637.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis
           SK121]
 gi|229321497|gb|EEN87297.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis
           SK121]
          Length = 292

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ LT    G T+++IA +LG++  TV +Y+ S M K    TR  A+  A R  +
Sbjct: 231 LTKREIDVLTVAGAGMTNNQIAGVLGLALFTVKSYMKSAMHKLGASTRLEAVVLARRGGM 290

Query: 246 V 246
           +
Sbjct: 291 I 291


>gi|212702417|ref|ZP_03310545.1| hypothetical protein DESPIG_00433 [Desulfovibrio piger ATCC 29098]
 gi|212674078|gb|EEB34561.1| hypothetical protein DESPIG_00433 [Desulfovibrio piger ATCC 29098]
          Length = 222

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           + A  + N  +      G D   L+ RE E    +++G +  +I   L IS  TV  +  
Sbjct: 137 MAALMRQNRQRLSPAEGGPDIGMLSPREKEIFRLLADGYSVRQIGDALNISPKTVETHKY 196

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S++ K    + +     A+R  +V
Sbjct: 197 SVLTKLRASSINELTKMAIRLGLV 220


>gi|317503418|ref|ZP_07961460.1| transcriptional regulator [Prevotella salivae DSM 15606]
 gi|315665470|gb|EFV05095.1| transcriptional regulator [Prevotella salivae DSM 15606]
          Length = 214

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I++G  + EIA  L I   TV ++  +I+ K   K+ S    YAV +  
Sbjct: 149 LSDREIEVLSLIAQGFINKEIANQLNIGLTTVISHRKNIVEKLGMKSVSALTIYAVMHGY 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|299069551|emb|CBJ40823.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CMR15]
          Length = 177

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+ + L  ++ GK++ EIA  L IS  TV +++  I+ +   + R+   A 
Sbjct: 112 LTPRQQDILREVASGKSNVEIAQTLHISVETVKSHMQQILMRLEARNRTELAAM 165


>gi|288927583|ref|ZP_06421430.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330417|gb|EFC69001.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 318

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 11/215 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +  LD   +    +  L +    S   +     ++E+ +   V S           +   
Sbjct: 104 VAALDEKDNLARLILKLYDEYAHS---IRSHMKYEEKMVFPYVDSLLNNKAQNNYDIETF 160

Query: 96  DKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
            K++     +  EL   +   LP +       +N+  ++ +D+      L+        I
Sbjct: 161 SKHHGQTDVKLRELKNIIIKYLPSDGLH----NNQLTAVLYDIYNNEEWLLHHGQVEDEI 216

Query: 155 LRDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
               +  +   +       K  ++          L+ RE E +  + +G T+ EIA  L 
Sbjct: 217 FVPAIRRLEAKSKQNDVSVKISNMINQTNDNVDNLSEREKEVIISLVQGMTNKEIADHLC 276

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS NTV  +  +I RK    + +G   YA+ NN+V
Sbjct: 277 ISINTVITHRRNIARKLQIHSPAGLTIYAIVNNLV 311


>gi|257095330|ref|YP_003168971.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047854|gb|ACV37042.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 904

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 93/275 (33%), Gaps = 36/275 (13%)

Query: 1   MNFEIQQVNIVLNREDEQR---TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE--- 54
           M+F +  V   L + D  R    +    L  ++DL A      C     +R   L E   
Sbjct: 634 MSFLLAAVYQALGQADRARAIVDAVCERLAEKADLPALFRARACQADLALRQGRLAEAQD 693

Query: 55  ---------------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          +  A H  L R  + +               L++ +      ++ 
Sbjct: 694 WARSFDPGPVQFVYRFFSAPHLTLARVWIAEGSDESR----KQAARLLQLLEAQLTSRHN 749

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
                       +      + +       R  +LT     IR   + +     ++   +L
Sbjct: 750 VRFLAEALALQALLEYALGDESAAVERLGRALALTRTGGFIR---LFVDLGQELVKPLKL 806

Query: 160 WEIGL-LAAYQANMFKSYDVHW----GKD---FELTGREVECLTWISEGKTSDEIAVILG 211
            E  +  A Y   +  + +  W    G+     +LT RE++ L  ++   ++ EI+  L 
Sbjct: 807 LEASIGNARYAGQILAALNDDWLVTAGRQQVGADLTRRELKILKLLAVRLSNIEISEELC 866

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ISR TV  +  +I RK    +R  A+  A   NI+
Sbjct: 867 ISRATVKRHTQNIYRKLRASSRREAVVRARTLNIL 901


>gi|254741101|ref|ZP_05198789.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Kruger B]
          Length = 212

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           VR   ++  +    + +  TE    +  T  ++      + N    Y     D  RIR  
Sbjct: 56  VRMPNMNGVEATKLICEE-TETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKT 202
           +  ++    ++    L +I        N+ +S +     D  L T RE+  +  I++G +
Sbjct: 115 IKGVYNGQTVMQDVVLDKIK------CNLMESKEDECKIDKCLFTERELSIIALIAKGFS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 169 NKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|320450528|ref|YP_004202624.1| two component transcriptional regulator, LuxR family [Thermus
           scotoductus SA-01]
 gi|320150697|gb|ADW22075.1| two component transcriptional regulator, LuxR family [Thermus
           scotoductus SA-01]
          Length = 209

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--------ELTGREVECLTWISE 199
           +     + ++ L  +  LA  +  +  +  +    +          L+ RE E L  +++
Sbjct: 101 YVSKAAVDQELLDAVLALARGERYLNPALAMRLAMEIVREEGEEEPLSPREEEVLRLLAK 160

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G +  E+A  L IS  TV  Y    M K   K+RS  + YAV+  
Sbjct: 161 GLSHKEVAEHLSISEKTVATYRERGMEKLGLKSRSDLLRYAVKRG 205


>gi|319950402|ref|ZP_08024318.1| response regulator receiver protein [Dietzia cinnamea P4]
 gi|319435918|gb|EFV91122.1| response regulator receiver protein [Dietzia cinnamea P4]
          Length = 287

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           LRDRL   G   A         +V       L+ RE++ L  ++ G ++ E+   L +S 
Sbjct: 195 LRDRLLAAGSALAGVGRSPDVGEVPASAKSVLSPREIDVLAQVALGLSNAEVGARLSLSP 254

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+  Y+ +I  K  T++R  ++A A    ++
Sbjct: 255 ETIKAYLRNIGTKLGTRSRMESVARARLLGLL 286


>gi|271961819|ref|YP_003336015.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504994|gb|ACZ83272.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 8/161 (4%)

Query: 83  PFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVAR 139
           P  ++  + + + D       L    ++       + E I          +     D   
Sbjct: 49  PDVVLMDIRMPKLDGISATRELSGIADVLILTTFDIDEYIFGALRAGAAGFLLKNTDADA 108

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   + ++     +I         L++A+   + +      G    LT RE E L  I  
Sbjct: 109 LVEAVRVVARGDGLISPSVTRR--LISAFGTAVPERRPQEVG---GLTPREREVLACIGR 163

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G ++ EI+V L ++  T   +++ ++ K   ++R  A   A
Sbjct: 164 GMSNAEISVELDMAEATTKTHVSRLLNKLGLRSRVQAAILA 204


>gi|111017160|ref|YP_700132.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
           jostii RHA1]
 gi|110816690|gb|ABG91974.1| possible protein kinase/ transcriptional regulator, LuxR family
           protein [Rhodococcus jostii RHA1]
          Length = 785

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +A                   LT RE +    +++G T+  IA  L IS+ T   ++  
Sbjct: 700 AVAHALDEQPPETVSASNGATHLTRREWQVAELVADGLTNKAIAARLVISQRTAQGHVEH 759

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           I+ K    +R+   A+ V +
Sbjct: 760 ILAKLGFNSRTQIAAWIVEH 779


>gi|32967994|gb|AAP92509.1| transcriptional regulator [Streptomyces vinaceus]
          Length = 236

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 35/75 (46%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++         +   L+ RE + L  + +G+++ EIA  L +S  TV ++++ ++ K   
Sbjct: 153 HLVPRRTDRPAELELLSEREQQVLLLVGDGRSNREIARTLRVSEATVKSHVSRVLAKLEL 212

Query: 231 KTRSGAIAYAVRNNI 245
           + R  A     R  +
Sbjct: 213 RDRVHAAQLVWRLGL 227


>gi|39934752|ref|NP_947028.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192290274|ref|YP_001990879.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|39648602|emb|CAE27123.1| ptwo-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
 gi|192284023|gb|ACF00404.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 208

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 12/173 (6%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN--ITPPAG 125
              + L ++  S  P  ++  + +  +     + +    +   P+F    +         
Sbjct: 38  ADGESLLAVARSRSPACILLDVHIPGRSGLDILAELHAEDYPAPIFMISGKGDIAMAVNA 97

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           + N          R +  +  +        R R        A Q +   SY+    +   
Sbjct: 98  IKNGALDFIEKPFRGKEIVSRVEEAIEAFSRRR-------DAGQGSKAPSYNFPGKEP-- 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L   S G T+ E    LGIS  T+  + A+IM+K   +  +  + 
Sbjct: 149 LTLREREVLELFSAGNTNKEAGRQLGISPRTIEYHRANIMKKLGARNATDLVR 201


>gi|271965668|ref|YP_003339864.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508843|gb|ACZ87121.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           + H L          D     +   V R+  G  +L P+    L DR       AA QA 
Sbjct: 93  ILHALRAGAAGFLLKDTPPAQIVEAVRRVAAGDPVLSPRITRRLMDR-------AATQAG 145

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            ++           L+ RE E +  ++ G+T+ EIAV L +   TV  +++ I+ K    
Sbjct: 146 AYQRARAALAT---LSPRENEVVLAVARGRTNAEIAVELYMKVTTVKAHVSHILSKLELD 202

Query: 232 TRSGAIAYAVRNNI 245
            R+     A    +
Sbjct: 203 NRTQIALLAHDAGL 216


>gi|254192581|ref|ZP_04899020.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           S13]
 gi|169649339|gb|EDS82032.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           S13]
          Length = 921

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 841 AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 900

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 901 ASSRKHAVRRALVLGLL 917


>gi|73543101|ref|YP_297621.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72120514|gb|AAZ62777.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 231

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 17/167 (10%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPVFH---TLPENITPPAGMDNRYCSLTFD 136
           P  ++  + +           + ++  E+   V      L             Y      
Sbjct: 69  PDLVITDIGMRGMGGIALTAALHEQYPEIAVLVVSMHDNLEYARQAVRAGARGYVLKDAP 128

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +         +L  R++    +A   A    +     G    LT RE + L  
Sbjct: 129 ADELMAAI-------EAVLAGRVFYSARIARGMAEQMPAT----GPLDALTRRERDILGC 177

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           I  G  + EIA  LG+S  TV  +  ++ RK   + R+G + YAV  
Sbjct: 178 IGRGMANKEIATQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVEQ 224


>gi|88856025|ref|ZP_01130687.1| putative LuxR-family transcriptional regulator [marine
           actinobacterium PHSC20C1]
 gi|88814892|gb|EAR24752.1| putative LuxR-family transcriptional regulator [marine
           actinobacterium PHSC20C1]
          Length = 532

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R   R +  E+G L      M  + ++     F L+ RE      +  G +S +IA  L 
Sbjct: 434 RASARSQPLEVGALIKRLDGM--TVNLRPQDSFALSDRERAIARELVRGSSSAQIAESLY 491

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IS NTV +++ +I RK    +R+ AI  +    +
Sbjct: 492 ISVNTVKSHLKNIYRKLGVTSRAEAIHKSRELGL 525


>gi|254234270|ref|ZP_04927593.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719]
 gi|126166201|gb|EAZ51712.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719]
          Length = 243

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 22/233 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKLDSIVSSDWPFDLVR 88
           D +AR+     T +    M   +  +G    ++        +++ +D +       D   
Sbjct: 10  DSVARLRKAATTEAVCREMVEFSARLGFDRVIVCSLFPRPDEDELIDELFFVH--GDWAE 67

Query: 89  CMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             +  ++D Y     V +   EL  P F +   +  P   M  R      D+ ++    +
Sbjct: 68  GRSAQQRDAYLLHCPVTRHILELDEPFFWSKSPSEDPER-MTYRIVRGVRDLGQVNGMQV 126

Query: 146 LLFPKGRI-----ILRDRLWEIG----LLAAYQANMFKSY-----DVHWGKDFELTGREV 191
            +F +  +        +RL           A+   +F +       V  G    L+ RE 
Sbjct: 127 PVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERER 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 187 EVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|304411116|ref|ZP_07392732.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|307301761|ref|ZP_07581519.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
 gi|304350651|gb|EFM15053.1| transcriptional regulator, LuxR family [Shewanella baltica OS183]
 gi|306913799|gb|EFN44220.1| transcriptional regulator, LuxR family [Shewanella baltica BA175]
          Length = 221

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 14/168 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARI 140
            F L+     +  +K   +L        PV  +    +++   + M      L F   R 
Sbjct: 47  SFYLITQKGSALDNKGIPLLASRLVSHFPVALYQVERDSLDQESAMLLGIRGLLFADQR- 105

Query: 141 RIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVE 192
              L L+    R ++ + LW +  LL+     + +  D +     +       LT RE  
Sbjct: 106 ---LDLMLTGLRKMVAEELWYDRTLLSKVFRRVVQKLDGNNEMPSDSVAMLQMLTSRERT 162

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 163 IIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|283851842|ref|ZP_06369119.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
 gi|283572758|gb|EFC20741.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
          Length = 221

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           A   + Y   T     +   +M +    + +  D      + A              G  
Sbjct: 105 AAGADGYLLKTASTDELATAIMAVATGKKYLSPD------VSANVVDGFVNPDGGSHGSK 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L ++ E + + EI  +L IS  TV  + AS+ +K    T      Y ++N
Sbjct: 159 VNLSRREREVLRFVMESRGNKEIGELLFISHRTVEKHKASLKKKLLCDTDVELAIYCMKN 218

Query: 244 NIV 246
           +I+
Sbjct: 219 DIL 221


>gi|257792389|ref|YP_003182995.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257476286|gb|ACV56606.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 470

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 169 QANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           + +MF S D      G    LT REVE L  + +G++   IA  L IS NTV ++   I 
Sbjct: 393 ERSMFASIDEGCERLGSQRGLTAREVEVLQLLCKGRSKSYIAESLFISENTVRSHSKHIY 452

Query: 226 RKTATKTRSG 235
            K    ++  
Sbjct: 453 AKLDVHSKQE 462


>gi|251768274|ref|ZP_02270085.2| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20]
 gi|243060341|gb|EES42527.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20]
          Length = 894

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 814 AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 873

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 874 ASSRKHAVRRALVLGLL 890


>gi|326802259|ref|YP_004320078.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326553023|gb|ADZ81408.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 214

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +   V   +D++LT RE   L ++  G +   I   LGIS  T+ +++  + RK    + 
Sbjct: 142 ERRSVKINRDYQLTLREKTILNYLVNGLSYKMIGHELGISYETIRSHMKKVYRKLEVSSL 201

Query: 234 SGAIAYAVRNNIV 246
           +  +A A++  IV
Sbjct: 202 TEVVAKAIKQEIV 214


>gi|307717986|ref|YP_003873518.1| transcriptional regulator protein [Spirochaeta thermophila DSM
           6192]
 gi|306531711|gb|ADN01245.1| putative transcriptional regulator protein [Spirochaeta thermophila
           DSM 6192]
          Length = 709

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 30/231 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + + N  LNRE ++R      L  R      M      + W +    +      ++    
Sbjct: 467 LARSNETLNREIDKRRQVEEELRKREHYFREMALFLPVLIWELDEEGMVS---FANHTAR 523

Query: 65  RWDLFQEQKLDSIVSSDWPFD-LVRCMALSEKDKYYNVLQRPTELFCPVFHTL-PENITP 122
           R  L Q++ L+    S +PF  LV  +     +++   ++   E+    F    PE +  
Sbjct: 524 R--LIQKKGLE----SPFPFLMLVEDLDQEHVEEFLERIKAGREVSSTQFRIATPEGVVH 577

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                         V   R G + +              +GL      +     +  +  
Sbjct: 578 HVLAQGGPI-----VHEGRCGGVRV--------------VGLEVEPFLSSIIMPEEIFFS 618

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  T RE E L    +G +  EIA  LGIS NTV  +++SI  +     R
Sbjct: 619 HYHFTPREKEVLLLYIQGYSRKEIAKRLGISENTVKVHLSSIYNEVGVSNR 669


>gi|297203424|ref|ZP_06920821.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297148400|gb|EDY61596.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 227

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 58/176 (32%), Gaps = 3/176 (1%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++    +V  D     V  +  +E+ +       P  +    FH   + +         +
Sbjct: 44  DRTRPDVVLMDIRMPSVDGLTATERLRGRP--DAPQVVVLTTFHADEQVLRALRAGAAGF 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  A I   +  +     ++      ++   AA  A   +       +   L  RE
Sbjct: 102 VLKDTPPAEILAAVRRVAAGDPVLSPTVTRQLMAHAAGTAADTRRA-RARERIAALNDRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E    + +G ++ EIA  L +S  TV  +++ ++ K     R      A    ++
Sbjct: 161 REVAVAVGQGLSNAEIAAALYMSVATVKTHVSRVLAKLDLNNRVQIALLAYDAGLL 216


>gi|192361059|ref|YP_001981583.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus
           Ueda107]
 gi|190687224|gb|ACE84902.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus
           Ueda107]
          Length = 198

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 26/190 (13%)

Query: 65  RWDLFQEQKLDSIVSSDWPFD-LVRCMALSEKDKYYNVLQRPTELFCP----VFHTLPEN 119
                ++     ++     FD L+  + +  +     + Q   +   P    +  T   +
Sbjct: 27  EITQAEDGDRAWLMMKQQSFDILLTDIEMPGRSG-LELAQWVLQQKLPTKIIIITTFGRS 85

Query: 120 ITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                 +D     +        ++   +  +    R+I      E+ ++A          
Sbjct: 86  GYIRRAIDMGVSGFLLKDAPSDQLIDAIYKIMEGKRVID----GELAMMA---------- 131

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G+   L  +E   L   +EGKT+ EI+  L +S  TV NY++  + K     R  A
Sbjct: 132 ---LGETDPLNDKERRALRLAAEGKTTAEISNTLHLSEGTVRNYLSEAIAKLNAANRVDA 188

Query: 237 IAYAVRNNIV 246
              A +   +
Sbjct: 189 ARIARQKGWI 198


>gi|313792636|gb|EFS40722.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803170|gb|EFS44366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313829121|gb|EFS66835.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313839557|gb|EFS77271.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314963942|gb|EFT08042.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|315079093|gb|EFT51100.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315081562|gb|EFT53538.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315109751|gb|EFT81727.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327334500|gb|EGE76211.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1]
 gi|327457479|gb|EGF04134.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
          Length = 202

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  RE E L  +++G ++ +IA  L +S+ TV NY+++ M K    +R+ A+  A    
Sbjct: 141 PLNDRETEILRLVADGSSTAQIASRLYLSKGTVRNYLSTAMSKLDADSRTAAVTRAREEG 200


>gi|282860668|ref|ZP_06269734.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282564404|gb|EFB69940.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 220

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 54/157 (34%), Gaps = 3/157 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +    +   +  +   L    F       T      + +         +   +  +   
Sbjct: 63  GIEATRQVIRISPQSRVLILTTFDLDEYAFTALKAGASGFLLKNTRPEELLTAIRSVAAG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209
             ++         LL   + ++         +    L+ RE E L  +  G ++ EIA  
Sbjct: 123 DAVVSPRITRR--LLENLRPHIPDGSSADRDEWLSRLSAREREVLIKVGCGLSNTEIAAT 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L ++  TV +++  I++K   + R  A+ +A  + ++
Sbjct: 181 LYLAEATVKSHLGRILQKLELRDRIQAVIFAYESRLI 217


>gi|240141168|ref|YP_002965648.1| putative regulatory protein, LuxR family [Methylobacterium
           extorquens AM1]
 gi|240011145|gb|ACS42371.1| Putative regulatory protein, LuxR family [Methylobacterium
           extorquens AM1]
          Length = 165

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                  + F LT R+ E L  I +G ++ EIA+ L I+  TV  ++++++R    + R+
Sbjct: 92  RQPERSVRTFGLTLRQREVLALIGKGLSNREIAIALSIAEATVKIHVSAVIRMLGVRNRT 151

Query: 235 GAIAYA 240
            A   A
Sbjct: 152 EAALLA 157


>gi|187928121|ref|YP_001898608.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187725011|gb|ACD26176.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 222

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 6/181 (3%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGM 126
            E   D+I ++     LV  + L   D+   + +   RP      V             M
Sbjct: 35  DEGMFDAIETNADAGLLVIGLPLPHLDELSAIGEIMHRPHARHVVVLAESESPDIIRTLM 94

Query: 127 DNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   L L+   G+ I    L     L                K 
Sbjct: 95  QMGLSGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGAPNPALAGDPQTDPKL 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A + 
Sbjct: 155 LGITPRQYEILVLLSRGHPVKTISRMLNISEVTAKAHISTLYRRLKVRSRTEAVYVANQR 214

Query: 244 N 244
            
Sbjct: 215 G 215


>gi|270313641|gb|ACZ73896.1| FixJ [Azospirillum brasilense]
          Length = 230

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L W+ EGK++  IA  L IS  TV  + A +M K    +    +  A+   I
Sbjct: 166 LTPRERDVLQWLVEGKSNKVIAFELSISPRTVEIHRARVMEKMRADSLPSLVRMALAAGI 225


>gi|237507372|ref|ZP_04520087.1| GerE family regulatory protein [Burkholderia pseudomallei MSHR346]
 gi|234999577|gb|EEP49001.1| GerE family regulatory protein [Burkholderia pseudomallei MSHR346]
          Length = 921

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 841 AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 900

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 901 ASSRKHAVRRALVLGLL 917


>gi|88799767|ref|ZP_01115341.1| two-component response regulator NarL [Reinekea sp. MED297]
 gi|88777501|gb|EAR08702.1| two-component response regulator NarL [Reinekea sp. MED297]
          Length = 213

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 11/174 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV---LQRPTELFCPVFHTLPENITPPAGM---DNR 129
            IV+   P  ++  + +  +D    +        +    VF    +       +    + 
Sbjct: 41  RIVTEHEPDLILLDLNMPGQDGLQTLNKLRDAGVDARIIVFTVSDDQADIHRAIHNGADG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     D       +       +++       I  +     +     ++H     +LT R
Sbjct: 101 YLLKDIDPEEFLESIKRCMQGEQVVSPG----IQDVVRSALSKRLPENLHPALR-DLTDR 155

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E + L  I+ G  +  I   L I+  TV  ++  ++ K   ++R  A  +A  +
Sbjct: 156 EKDVLRLIAAGLPNKSIGQNLDIAEGTVKVHVKRVLSKLGLRSRVEAAIFAHEH 209


>gi|329939589|ref|ZP_08288890.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301159|gb|EGG45054.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 204

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K   + R+ A+  A    
Sbjct: 143 PLTDREREVLRAAADGATNAELATALHLSQGTVRNYLSTAIQKLTARNRTEAVRIAREKG 202


>gi|315222100|ref|ZP_07864010.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315188850|gb|EFU22555.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 227

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 82  WPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTF 135
            P  ++  + +   D       V ++  ++   +  T  ++    + +    + Y     
Sbjct: 47  HPDVILMDIRMPVMDGVLCTKAVKEQYPDIKIIILTTFDDDDFIFSALKYGASGYILKGV 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  ++  G +I  +   ++  + +  A    +  V      +++  E + + 
Sbjct: 107 STEELHQAIQTVYKGGAMINPNIATKVFKIFSQMAQSNFAISVAEENVEDMSQTEWKIIQ 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I  G ++ EIA  L +S  TV NY++ I+ +   + R+    +AV+  +
Sbjct: 167 QIGFGVSNKEIAAKLFLSEGTVRNYLSGILAELNLRDRTQLAIWAVQTGV 216


>gi|163749108|ref|ZP_02156358.1| transcriptional regulator, LuxR family protein [Shewanella benthica
           KT99]
 gi|161331178|gb|EDQ02067.1| transcriptional regulator, LuxR family protein [Shewanella benthica
           KT99]
          Length = 221

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 22/203 (10%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           +  L E +G    ++ +    + ++       +  F L+     +   K   +L      
Sbjct: 19  LAILAESIGLKTRIVKQVSELEPERD------NNCFYLIEQEGAALDSKGIPLLASRLVS 72

Query: 109 FCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
             PV  +    E + P + +      L +   R    + LL    R ++ D LW    L 
Sbjct: 73  HVPVALYQVNREKLEPESALLLGIRGLLYADQR----MDLLLTGLRKMVADELWYDRALI 128

Query: 167 AYQANMFKSYDVHWGKDFE---------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           +       S  +   KD+          LT RE   +  +S G  + EIA  L IS +TV
Sbjct: 129 SKMFRQLVSR-LDRTKDYSQDNAAMLQMLTKRERTIIQIVSSGARNKEIAHRLCISEHTV 187

Query: 218 NNYIASIMRKTATKTRSGAIAYA 240
             +I+SI RKT ++ R   + +A
Sbjct: 188 KAHISSIFRKTQSRNRVELLRWA 210


>gi|331697666|ref|YP_004333905.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952355|gb|AEA26052.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 220

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 16/132 (12%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
             +F  +          D    +L   V     G  L+ P+      +RL          
Sbjct: 90  QALFGAIVAGAAGYLLKDVAGTNLVGAVRTAAAGGSLIDPETAARALERLRTP------- 142

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                       +   L+ +E   L  I+ G T+ +I   L ++  TV NY++S++ K  
Sbjct: 143 ---------EDPRYESLSPQERRILDLIATGLTNRQIGAELFLAEKTVKNYVSSLLHKLG 193

Query: 230 TKTRSGAIAYAV 241
              R+ A  YA 
Sbjct: 194 FARRTEAAVYAA 205


>gi|239994578|ref|ZP_04715102.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii ATCC 27126]
          Length = 225

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE+     I++G  + EIA  L IS NTV  ++ SI RKT  + R   I +
Sbjct: 159 LTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNRVELIKW 212


>gi|242311949|ref|ZP_04810966.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106b]
 gi|242135188|gb|EES21591.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106b]
          Length = 921

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 841 AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 900

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 901 ASSRKHAVRRALVLGLL 917


>gi|217424211|ref|ZP_03455710.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           576]
 gi|217392676|gb|EEC32699.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           576]
          Length = 921

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 841 AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 900

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 901 ASSRKHAVRRALVLGLL 917


>gi|253699733|ref|YP_003020922.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251774583|gb|ACT17164.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 216

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 73/227 (32%), Gaps = 28/227 (12%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + +++ +D        +  L E       ++   D    +K   + +   P  ++  M +
Sbjct: 1   MIKVMVVDDHSIVREGIRILLERF-PDLSVVAEADNG--RKASELAADLAPHVVLMDMTM 57

Query: 93  SEK---DKYYNVLQRPTELFCPVF----------HTLPENITPPAGMDNRYCSLTFDVAR 139
                 D    +L    E+   +                        D     L   V +
Sbjct: 58  PGLNGIDATQRLLAACPEVRVLILSMHKDKRFVSQAFRAGARGYLLKDCASAELVQAVRQ 117

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +  G M +              IG++           +     +  LT RE E L  I+E
Sbjct: 118 VACGEMYVCHGI----------IGVVVHDYVTRLP--ESLTQPEVPLTPREREVLQLIAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  +   A  L I+  TV+ +   IM+K   ++ +    YA+R  ++
Sbjct: 166 GNNAKNAAYQLNINVKTVDTHRQQIMKKLKMRSVAELTKYAIREGLI 212


>gi|76817917|ref|YP_336593.1| GerE family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|254262602|ref|ZP_04953467.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710a]
 gi|76582390|gb|ABA51864.1| GerE family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|254213604|gb|EET02989.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710a]
          Length = 921

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 841 AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 900

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 901 ASSRKHAVRRALVLGLL 917


>gi|331696106|ref|YP_004332345.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950795|gb|AEA24492.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 446

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 62/171 (36%), Gaps = 13/171 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVF-HTLPENIT-----PPAGMDNRYCSLTFDVARI 140
           V     +E  +     QR   L C V     P+        P AG + R  + +    R 
Sbjct: 247 VEEYFSAELLERVTSAQRRLLLHCGVLDEVTPDGAEALTGSPGAGEELRALAASTLFLRR 306

Query: 141 RIGLMLLFPKGRIILRDRLW--EIGLL-----AAYQANMFKSYDVHWGKDFELTGREVEC 193
                 + P  R +L D L   E G+L      A++A +             L+ RE+  
Sbjct: 307 TPRGFRIHPALRPVLHDVLVREEPGMLPVLAERAHRAAVRDDAGPVLVAGEPLSPRELAV 366

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  ++   T  EIA  + +S NTV  ++ S+ RK     R  A+       
Sbjct: 367 LRALAGPLTLREIAAEMHLSHNTVKTHVRSVFRKLRVHERRAAVVAGRERG 417


>gi|302186676|ref|ZP_07263349.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
          Length = 220

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 8/159 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-DNRYCSLTFDVARIRIGLMLLFP 149
            L   +    +  R   +        P+ I     +  + Y       A +   L  L  
Sbjct: 63  GLDALEHLLKMQPRCK-VLILSMQNDPDMIMRALDIGTHGYLLKDTTAAELEQALGALRN 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIA 207
             R +       I  +    A      D  W   + + LT R++E L  I  GK++ EIA
Sbjct: 122 NERYLSPA----IAEMVIECALRGTPSDRAWAAKERYRLTARQLEILRLIVRGKSTREIA 177

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             LG+S  T+  + A +M++      +G + + VR  I+
Sbjct: 178 DGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRERII 216


>gi|282865409|ref|ZP_06274461.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282559882|gb|EFB65432.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 203

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G T+ EIA  + +S  TV NY+++ ++KTA + R+ A+  A    
Sbjct: 142 PLTDREREVLRAAADGATNVEIAGAMHLSPGTVRNYLSTAIQKTAARNRTEAVRVAGEKG 201


>gi|84687744|ref|ZP_01015616.1| two component transcriptional regulator, LuxR family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664245|gb|EAQ10737.1| two component transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 215

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 11/176 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGM- 126
           E  LD +     P  ++  + L +    +    +++   E    +  +  E     + + 
Sbjct: 33  EAALDHLARDTAPDVILLDLNLPDVHGLEGLVRLVKSSAETPVIIVSSETEPRVVRSAIR 92

Query: 127 --DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y          R+ L  +           L      A   A      +    +  
Sbjct: 93  VGAAGYVPKHSSRDTFRLALTQIMRGEVYAPEVALSHQSANAPLTAR-----EDALVRIS 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT ++   L  I  G+ + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A
Sbjct: 148 HLTRQQARILQLICAGQMNKQIAYELSIAETTVKAHVTAIMRKLGVQSRTQAVLIA 203


>gi|317490255|ref|ZP_07948743.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833553|ref|ZP_08166002.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|316910749|gb|EFV32370.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485477|gb|EGC87946.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 470

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 169 QANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           + +MF S D      G    LT REVE L  + +G++   IA  L IS NTV ++   I 
Sbjct: 393 ERSMFASIDEGCERLGSQRGLTAREVEVLQLLCKGRSKSYIAESLFISENTVRSHSKHIY 452

Query: 226 RKTATKTR 233
            K    ++
Sbjct: 453 AKLDVHSK 460


>gi|313675451|ref|YP_004053447.1| two component transcriptional regulator, luxr family [Marivirga
           tractuosa DSM 4126]
 gi|312942149|gb|ADR21339.1| two component transcriptional regulator, LuxR family [Marivirga
           tractuosa DSM 4126]
          Length = 213

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 43/77 (55%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q    +++   + K ++L+ RE+E +  + +G T+ EIA  + +S  T+  +  +I++K 
Sbjct: 137 QTEPLENFSDDFLKKYKLSRREIEIIQLLKKGLTNQEIADKIFLSVLTIQTHRKNIIQKL 196

Query: 229 ATKTRSGAIAYAVRNNI 245
                +G IA+A  +NI
Sbjct: 197 EVNNSAGLIAFAHEHNI 213


>gi|295394806|ref|ZP_06805021.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972402|gb|EFG48262.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 202

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L     G +   IA  L +S  TV N+++S + K     RS A   A +  
Sbjct: 141 PLTEREREVLAVAHTGASVRTIADSLFLSEGTVRNHLSSAISKLGVDNRSTAAIEAAKRG 200


>gi|323525663|ref|YP_004227816.1| ATP-dependent transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382665|gb|ADX54756.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. CCGE1001]
          Length = 921

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +++  ++  IA+ L I+  TV   + +I  K    +R  A+ +A + ++
Sbjct: 860 LTQREIEILGLVAQAMSNKRIALALNITLETVKWNLRNIFAKLGVSSRYDAMVWARKQDL 919

Query: 246 V 246
           +
Sbjct: 920 I 920


>gi|218891648|ref|YP_002440515.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218771874|emb|CAW27653.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 213

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +P+   L AR+I  D    +   +  +         +       +  +L S VS + P  
Sbjct: 1   MPSTRSLPARVIVADDYPLFRDGLRRVVRRYLPQAAVSEAGSFDEVLRLASSVSPEPPVL 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-------NRYCSLTFDVA 138
            V  + L         ++R    +      +   +  P  +D       + Y   + +  
Sbjct: 61  FVLDLLLPG-FAASQSIERLRRAYRHSAIVIVSMLDDPRLVDEVLAAGADGYLGKSLEAG 119

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   L  L     ++   RL       + Q  +  +          LT R+   L  I+
Sbjct: 120 EIGTALQTLGSGEPVV---RLRGGSSAGSRQRALLDA----------LTPRQQAVLRLIA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +G ++ EI   L IS  TV  +++S++R     TR+
Sbjct: 167 DGLSNKEIGRALSISPFTVRVHVSSLLRALEVNTRT 202


>gi|218513661|ref|ZP_03510501.1| two-component response regulator protein [Rhizobium etli 8C-3]
          Length = 115

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R+R     L  +   +         G D  LT RE + L  I  G+++ EIA +LGIS  
Sbjct: 13  RNRRGWRHLFLSGVFDALMRERAEEGSD-PLTPREHDTLGLIVAGRSNREIAEVLGISAA 71

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T   +  ++ +K    T +G I YA+ + I
Sbjct: 72  TAETHRKNLKKKLGIATTAGLIRYALDHGI 101


>gi|148657072|ref|YP_001277277.1| regulatory protein LuxR [Roseiflexus sp. RS-1]
 gi|148569182|gb|ABQ91327.1| regulatory protein, LuxR [Roseiflexus sp. RS-1]
          Length = 824

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE + L  ++ G T  +IA  L IS NTV  ++ S+  K    +R+ A+A A   +
Sbjct: 760 PLSERERDILRLMARGLTYRQIASELMISINTVRYHVKSLYSKLQVSSRTLALARARDLH 819

Query: 245 IV 246
           ++
Sbjct: 820 LL 821


>gi|271964324|ref|YP_003338520.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270507499|gb|ACZ85777.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 776

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    ++EG T+ +IA  L + + TV++++  I+ K     R+   A+A R  
Sbjct: 707 PLTRREREVAELVAEGLTNRQIAHRLMVVQRTVDSHVEHILAKLGFSARTQVAAWATRRR 766


>gi|255599174|ref|XP_002537168.1| Response regulator uvrY, putative [Ricinus communis]
 gi|223517249|gb|EEF25214.1| Response regulator uvrY, putative [Ricinus communis]
          Length = 112

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    ++ GK+++EIA  L +S  TV  ++ +I +K   +  +     A+R  +
Sbjct: 50  LSEREFEVFMSLARGKSTNEIAETLFLSPRTVGTHLYNIKQKLNAQNSAEIALIAMRCGL 109

Query: 246 V 246
           +
Sbjct: 110 L 110


>gi|53723309|ref|YP_112294.1| GerE family regulatory protein [Burkholderia pseudomallei K96243]
 gi|226199224|ref|ZP_03794784.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|52213723|emb|CAH39777.1| GerE family regulatory protein [Burkholderia pseudomallei K96243]
 gi|225928631|gb|EEH24658.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 921

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 841 AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 900

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 901 ASSRKHAVRRALVLGLL 917


>gi|308176496|ref|YP_003915902.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743959|emb|CBT74931.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 220

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 6/150 (4%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L   +    +      +    F              + +   + +   I +G+       
Sbjct: 59  LDGIEATKALHGSCRVVVLTTFDDDQYLFGALQAGAHGFLLKSAEPQAIIMGVRAAGRGE 118

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            ++      +  + +   A               LTGRE E L  ++EG ++ ++A  LG
Sbjct: 119 SVL------DPQVTSRILARALAPEPGTAKLPDGLTGREREVLDGLAEGLSNPQLAQRLG 172

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           I ++TV  +++ ++ K    TR  A   A 
Sbjct: 173 IGQSTVKTHVSQVLAKLGVSTRLQAAKIAY 202


>gi|295107220|emb|CBL04763.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 126

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE +    I+EG T+D+IA+ L IS +TV ++I +I  K     R+  +A
Sbjct: 67  LTSRERDVALLIAEGFTNDQIALRLCISLSTVKSHIQNIFAKAHVPNRTALVA 119


>gi|260591671|ref|ZP_05857129.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
 gi|260536471|gb|EEX19088.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
          Length = 349

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 86/222 (38%), Gaps = 14/222 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R +L A +   D      +R+     Y   +H  +     ++E+ +   V S    +   
Sbjct: 131 RKELTAALDENDNLARLILRL-----YDEYAH-SIRNHMQYEEKNVFPYVDSLLKGETND 184

Query: 89  CMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              +    K+++    +  EL   +   LP +       +NR  +  +D+      L   
Sbjct: 185 TYDVETYSKHHSQTDIKLRELKSIIIKYLPSDSHH----NNRLTATLYDIYNCEEWLNQH 240

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSD 204
                 I    +  +   +       K  ++   +   +  L+ RE + +  +++G T+ 
Sbjct: 241 ARVEEEIFIPVIRRLEQKSKQNDVSVKISNMITQNPESNEVLSDREKDVIVSVAQGMTNK 300

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS NTV  +  +I RK    + +G   YA+ NN+V
Sbjct: 301 EIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNLV 342


>gi|152996834|ref|YP_001341669.1| response regulator receiver protein [Marinomonas sp. MWYL1]
 gi|150837758|gb|ABR71734.1| response regulator receiver protein [Marinomonas sp. MWYL1]
          Length = 211

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 41/78 (52%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +         S  +H  +  +L+ RE++  +++S+G ++ +IA+ +GI+  TV  ++ 
Sbjct: 127 AFIQQLIMQSATSEPLHNDELDDLSERELKVSSFVSKGLSNKQIALEMGITERTVKAHLT 186

Query: 223 SIMRKTATKTRSGAIAYA 240
           SI +KT TK R      A
Sbjct: 187 SIFKKTNTKDRLALALLA 204


>gi|86750958|ref|YP_487454.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86573986|gb|ABD08543.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 209

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K+    +     LT RE E L   + G T+ E    LGIS  T+  + A+IM+K   + 
Sbjct: 136 VKAPSYVFPGKEPLTLREREVLELFASGNTNKEAGRQLGISPRTIEYHRANIMKKLGARN 195

Query: 233 RSGAIA 238
            +  + 
Sbjct: 196 ATDLVR 201


>gi|54297872|ref|YP_124241.1| hypothetical protein lpp1927 [Legionella pneumophila str. Paris]
 gi|53751657|emb|CAH13079.1| hypothetical protein lpp1927 [Legionella pneumophila str. Paris]
          Length = 223

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE EC+  +  GK++  I  +L +S+ TV +YI +I  K   + ++  +  AV N
Sbjct: 145 YGLTEREHECVFLLIRGKSAKGIGALLSLSKRTVESYIENIKNKMDCRNKAEILVKAVSN 204

Query: 244 N 244
            
Sbjct: 205 G 205


>gi|158520046|ref|YP_001527916.1| two component LuxR family transcriptional regulator [Desulfococcus
           oleovorans Hxd3]
 gi|158508872|gb|ABW65839.1| two component transcriptional regulator, LuxR family [Desulfococcus
           oleovorans Hxd3]
          Length = 214

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 12/134 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L   +      D  +  L   V  +  G   L P     +R  L            
Sbjct: 90  VLGMLKAGVAGYLIKDCAFEELARAVVVVHRGETYLSPAIADTVRKVL------------ 137

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +       +  ELT RE + L  I+EG  + +IA  L IS  TV  Y +SIM+K    
Sbjct: 138 VTRIDQDPLTRVEELTERERQVLQMIAEGIKTKDIAESLHISVKTVETYRSSIMQKLGLF 197

Query: 232 TRSGAIAYAVRNNI 245
           + +    +AVR  I
Sbjct: 198 SVAELTKFAVREGI 211


>gi|119386432|ref|YP_917487.1| response regulator receiver protein [Paracoccus denitrificans
           PD1222]
 gi|119377027|gb|ABL71791.1| transcriptional regulator, LuxR family [Paracoccus denitrificans
           PD1222]
          Length = 290

 Score = 76.2 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 7/149 (4%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-DRLWE- 161
           R      P      +       +      +  DV RIR G+++    G    R D LW  
Sbjct: 99  RLAGRLSPREERAMDVFARYGHVAGYAVGMGDDVERIRAGVIVSGTIGMRQDRLDALWAQ 158

Query: 162 ----IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
               +G L+        +   H  ++  LT R+ E L  IS G T+ EIA IL ++  TV
Sbjct: 159 HGRLVGALSGVMHLRISTL-PHAERECVLTLRQREVLECISAGHTTQEIAQILEVTPATV 217

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++    R    KT + AI  A  +  +
Sbjct: 218 EKHLRLARRALGAKTTAQAILLAASSKQI 246


>gi|326626887|gb|EGE33230.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 270

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    +     ++    AG       N + S  
Sbjct: 108 YPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKR 167

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+  I   + ++         + L        + +N       H   D  L+ REV  L
Sbjct: 168 KDLNDIYNAVKMILSGYSFFPSETL-------NFISNTRTPKGGHH--DMPLSNREVTVL 218

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + ++
Sbjct: 219 RYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL 270


>gi|323128869|gb|ADX16299.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 270

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    +     ++    AG       N + S  
Sbjct: 108 YPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKR 167

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+  I   + ++         + L        + +N       H   D  L+ REV  L
Sbjct: 168 KDLNDIYNAVKMILSGYSFFPSETL-------NFISNTRTPKGGHH--DMPLSNREVTVL 218

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + ++
Sbjct: 219 RYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL 270


>gi|294631223|ref|ZP_06709783.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292834556|gb|EFF92905.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 204

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A    
Sbjct: 143 PLTDREREVLRAAADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRTAREKG 202


>gi|212694892|ref|ZP_03303020.1| hypothetical protein BACDOR_04426 [Bacteroides dorei DSM 17855]
 gi|237710761|ref|ZP_04541242.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|237727151|ref|ZP_04557632.1| transcriptional regulator [Bacteroides sp. D4]
 gi|265750433|ref|ZP_06086496.1| 6-phosphogluconate dehydrogenase [Bacteroides sp. 3_1_33FAA]
 gi|212662570|gb|EEB23144.1| hypothetical protein BACDOR_04426 [Bacteroides dorei DSM 17855]
 gi|229434007|gb|EEO44084.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|229455483|gb|EEO61204.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|263237329|gb|EEZ22779.1| 6-phosphogluconate dehydrogenase [Bacteroides sp. 3_1_33FAA]
          Length = 203

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D   G+   L+ RE E +  +  G T+ E A  L +S +TV  +  +I RK    + +G
Sbjct: 124 VDETDGEQETLSQREKEIICCVVRGMTNKETAEKLFLSIHTVITHRRNIARKLQIHSPAG 183

Query: 236 AIAYAVRNNIV 246
              YA+ N +V
Sbjct: 184 LTIYAIVNKLV 194


>gi|38230162|gb|AAR14178.1| AHL receptor-like protein [Aeromonas veronii]
          Length = 75

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 30/47 (63%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                LT RE ECL W SEGKTS EIA ILGI+  TVN ++  + R+
Sbjct: 28  DPQEPLTERETECLFWASEGKTSGEIACILGITERTVNYHLNPVTRR 74


>gi|309792191|ref|ZP_07686663.1| two-component transcriptional regulator, LuxR family protein
           [Oscillochloris trichoides DG6]
 gi|308225732|gb|EFO79488.1| two-component transcriptional regulator, LuxR family protein
           [Oscillochloris trichoides DG6]
          Length = 204

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 4/138 (2%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
            +     H    N+            L    A   I  + +       L D L    +++
Sbjct: 67  HVLILSVHDDASNLRQALAAGASGYILKSTAANALIQAIRIVAANGFYL-DPLLTPHVVS 125

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y      + ++      EL+ RE E +  + EG ++ +IA+ L +S  TV  Y A  + 
Sbjct: 126 QYVQRSPATTNLLGS---ELSEREREVVQRVVEGYSNKDIALQLNLSIKTVETYRARALD 182

Query: 227 KTATKTRSGAIAYAVRNN 244
           K     R+  + YA+   
Sbjct: 183 KLGLSGRAELVRYAIEQG 200


>gi|308067670|ref|YP_003869275.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
 gi|305856949|gb|ADM68737.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
          Length = 199

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 37/75 (49%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++A  +    +  D  + +   LT RE   L  I++GK + EIA  L ++  TV NYI+
Sbjct: 115 SIMAGRRIYAPELVDDAYAEVNPLTEREKTVLALIADGKNTKEIAGELYLTTGTVRNYIS 174

Query: 223 SIMRKTATKTRSGAI 237
            I+ K     R  AI
Sbjct: 175 VILDKLGVSNRIEAI 189


>gi|300934384|ref|ZP_07149640.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Corynebacterium resistens DSM
           45100]
          Length = 241

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E    I++G  + EIA  L IS  TV  ++A I+ K     R       +R
Sbjct: 184 LSPREKEIALLIAQGLGNAEIAEKLFISMPTVKTHVARILEKLQASNRVQIAIAVIR 240


>gi|317049512|ref|YP_004117160.1| LuxR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951129|gb|ADU70604.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 262

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 39/76 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            +++  +     +  L+ RE E L W S GKT  E+A +L ++ +T+  ++   ++K   
Sbjct: 172 QVYRKSEEVAAANTLLSTREAEILYWSSTGKTYAEVAEMLQLTVSTIKFHMGKTVKKLGV 231

Query: 231 KTRSGAIAYAVRNNIV 246
           K    AI+ A   N++
Sbjct: 232 KNAKHAISLASELNLI 247


>gi|257056288|ref|YP_003134120.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256586160|gb|ACU97293.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 239

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            +   N  +           L+ +E   L  I EG T+ EIA  L ++  TV NY++ ++
Sbjct: 131 TSALMNRIRREREESDPVSGLSEQERAVLDLIGEGLTNREIAARLYLAEKTVKNYVSRLL 190

Query: 226 RKTATKTRSGAIAYA 240
            K   + R+ A   A
Sbjct: 191 GKLGMQRRTQAAVLA 205


>gi|89891291|ref|ZP_01202798.1| putative response regulator, luxR family [Flavobacteria bacterium
           BBFL7]
 gi|89516603|gb|EAS19263.1| putative response regulator, luxR family [Flavobacteria bacterium
           BBFL7]
          Length = 218

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  I E  T+ EIA  L +S+ TV+ +  +++ KT  +  +G +AYA++N I
Sbjct: 154 LSPRELDVLQLICEQFTTAEIADKLCVSKRTVDGHRNNLLIKTKMRNVAGLVAYAIQNAI 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|84495578|ref|ZP_00994697.1| two-component response regulator [Janibacter sp. HTCC2649]
 gi|84385071|gb|EAQ00951.1| two-component response regulator [Janibacter sp. HTCC2649]
          Length = 207

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE + L  +++G  + ++A  LGI+  TV  ++  + R+     R+ A  +A  +
Sbjct: 146 LSPRETQVLRLVAQGLANKQVARALGITERTVKAHLGRVFREIGVLDRTSAALWARDH 203


>gi|271962335|ref|YP_003336531.1| LuxR family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270505510|gb|ACZ83788.1| transcriptional regulator, LuxR family [Streptosporangium roseum
           DSM 43021]
          Length = 967

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  +++G+++ +IA  L IS  TV+ ++++I+ K    TR  A A A R  ++
Sbjct: 907 TPREQEVLRLVTQGRSNRDIAAELFISAKTVSVHVSNILGKLGVSTRGEAAAAAHRLALI 966


>gi|117618841|ref|YP_856117.1| LuxR family DNA-binding response regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560248|gb|ABK37196.1| DNA-binding response regulator, LuxR family [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 212

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           + +       + Y     +   +   L  +    +I+          L  Y  N+++  D
Sbjct: 93  DVVALLKAGADGYLLKDTEPEMLLAQLADVMTGKQILSEP-------LRPYLENIYE-LD 144

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               K   LT RE++ L  I++G ++ ++A +L IS  TV  ++ S+++K   ++R  A 
Sbjct: 145 HLQQKLESLTRREMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLLKKLEAQSRVEAA 204

Query: 238 AYAVRNN 244
              +   
Sbjct: 205 VMYLEQR 211


>gi|17549413|ref|NP_522753.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431666|emb|CAD18343.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 89

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            ++      + W +   LT R+ + L   + GK++ EIA  L IS  TV  ++  I+ + 
Sbjct: 7   VSHADAPIPMAWPQHPMLTTRQQDILREAAFGKSNAEIAQSLHISIETVKTHVRQILMRL 66

Query: 229 ATKTRSGAIAY---AVRNN 244
             + R+   A    A+ ++
Sbjct: 67  EARNRTELAAMYQQALHHH 85


>gi|126456123|ref|YP_001077126.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|126229891|gb|ABN93304.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106a]
          Length = 898

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 818 AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 877

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 878 ASSRKHAVRRALVLGLL 894


>gi|91975978|ref|YP_568637.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682434|gb|ABE38736.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 209

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT RE E L   + G T+ E    LGIS  T+  + A+IM+K   +  +  + 
Sbjct: 148 PLTLREREVLELFASGNTNKEAGRQLGISPRTIEYHRANIMKKLGARNATDLVR 201


>gi|262381581|ref|ZP_06074719.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296758|gb|EEY84688.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 254

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 32/64 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE E L  I +G  S EIA  L +S  TVNN+  +I+ K        AI  A  
Sbjct: 190 DQQLTKREKEILLLIRQGFLSKEIASKLNLSIYTVNNHRKNILAKLKVDNVIEAINRAES 249

Query: 243 NNIV 246
             I+
Sbjct: 250 FGIL 253


>gi|146306323|ref|YP_001186788.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145574524|gb|ABP84056.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 215

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A   A + +           LT ++   LT + EG  + +IA  L +S  TV  ++ +I
Sbjct: 132 MAEESAPVSEEAKAAGAGLASLTPQQFRVLTMVCEGLLNKQIAYELSVSEATVKAHVTAI 191

Query: 225 MRKTATKTRSGAI 237
            RK   +TR+ A 
Sbjct: 192 FRKLGVRTRTQAA 204


>gi|306835684|ref|ZP_07468690.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304568402|gb|EFM43961.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 219

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 2/156 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++      +       +    F    + ++           L      + +  +    K
Sbjct: 64  GIAAAQAILSRTPDCRIIMLTTF-NEEDLVSQSIAAGAHGFLLKDADPEVLVQAVRDVAK 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVI 209
           G  +L  ++    L    +A        H  +   L T RE+E LT I+ G T+ EIA  
Sbjct: 123 GESVLASQVTGPVLEGYRKALTHSQLSPHERQGLSLVTRREMEVLTLIARGATNGEIAGH 182

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + I+  TV  +++++M K A + R   +  A +  I
Sbjct: 183 MSIADTTVKTHVSALMSKLAARDRVALVLLAHKAGI 218


>gi|312114265|ref|YP_004011861.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219394|gb|ADP70762.1| two component transcriptional regulator, LuxR family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 219

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 36/84 (42%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +  + A        S   +     +L+ REVE L + S G ++  IA IL IS  +V  Y
Sbjct: 131 DPSIAAHAVDRTLDSPSENATAGADLSEREVEVLRFASVGHSNKAIANILTISVRSVETY 190

Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244
            A  M K     R G + YA+   
Sbjct: 191 KARAMDKLGLDNRVGLVGYAIEKG 214


>gi|227501523|ref|ZP_03931572.1| possible response regulator [Corynebacterium accolens ATCC 49725]
 gi|227077548|gb|EEI15511.1| possible response regulator [Corynebacterium accolens ATCC 49725]
          Length = 219

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 1/97 (1%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAV 208
           KG  +L  ++    L    +A        H  +   L T RE+E LT I+ G T+ EIA 
Sbjct: 122 KGESVLAAQVTGPVLEGYRKALTHSQLSPHERQGLSLVTRREMEVLTLIARGATNSEIAG 181

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + I+  TV  +++++M K A + R   +  A +  I
Sbjct: 182 HMSIADTTVKTHVSALMSKLAARDRVALVLLAHKAGI 218


>gi|167829868|ref|ZP_02461339.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
          Length = 89

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 9   AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 68

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 69  ASSRKHAVRRALVLGLL 85


>gi|126653823|ref|ZP_01725686.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905]
 gi|126589660|gb|EAZ83797.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905]
          Length = 229

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 37/68 (54%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              K   L+ RE+E +  I+ G ++ E+A  + +S  T+N Y+ S ++K   K R+ AI+
Sbjct: 162 DHKKGSILSKRELEVMRQIALGDSTKEMADFMNLSELTINQYVKSAIKKLQAKNRTHAIS 221

Query: 239 YAVRNNIV 246
              +  ++
Sbjct: 222 ILYQEGVI 229


>gi|299133992|ref|ZP_07027185.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
 gi|298590739|gb|EFI50941.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
          Length = 262

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE   L  I EG ++  IA  + IS  TV  ++ SI+RK    +R+ A  + + + 
Sbjct: 171 QLSLREKVVLRCIIEGGSNKMIARKIAISEATVKVHVKSILRKIRVHSRTQAAIWGMNSG 230


>gi|296118527|ref|ZP_06837105.1| ATP-dependent transcriptional regulator, LuxR family
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295968426|gb|EFG81673.1| ATP-dependent transcriptional regulator, LuxR family
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 915

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG---AIAYAVR 242
           LT +E+E     + G T+ EIA  L +S  TV  ++  I RK   +TR+    A+A A+R
Sbjct: 855 LTTQELEVAQNAASGLTNKEIAAQLFLSPKTVEFHLTRIYRKLQIRTRTELPAALAQALR 914


>gi|260221013|emb|CBA29154.1| hypothetical protein Csp_A10720 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 75

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT R+   L  + +G+++ EI   L +S  TV  ++A+I+R    + R+ A+  A R+ 
Sbjct: 9   PLTQRQELVLRELLDGRSNKEIGTTLNVSEETVKTHVAAILRHFDVQNRTQAVVAAARSG 68


>gi|207724821|ref|YP_002255218.1| hypothetical protein RSMK03196 [Ralstonia solanacearum MolK2]
 gi|206590046|emb|CAQ37007.1| hypothetical protein RSMK03196 [Ralstonia solanacearum MolK2]
          Length = 161

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            ++A Q +   +          LT R+ + L   + GK++ EIA  L IS  TV  ++  
Sbjct: 74  AVSAAQPSAVSAPAAASKPRSALTPRQQDILREAASGKSNVEIARALQISVETVKTHMQQ 133

Query: 224 IMRKTATKTRSGAIAY 239
           I+ +   + R+  +A 
Sbjct: 134 ILMRLEARNRTELVAM 149


>gi|307730304|ref|YP_003907528.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307584839|gb|ADN58237.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 292

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 15/188 (7%)

Query: 63  LVRWDLFQE-QKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRP-------TELFCP- 111
           L R++  Q+ ++++  +   WP  LV      +S  D  + +   P       T+   P 
Sbjct: 26  LARFNEAQDWRQVERGLKRQWPDLLVIDWQDWMSVADVRHLLSHYPDLRIAVLTDRISPE 85

Query: 112 -VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
            V   + E +      +   C +      + +G   + P G + L   L     +  +  
Sbjct: 86  VVGELMDEGVRGVVARETDPCLIVRAFEMVLLGGHYV-PSGALPLNPPLPADTAIRPFDD 144

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                          L+ R+ + +  +  G T+  IA  LGIS  TV  ++ SI ++   
Sbjct: 145 KNPPPRRARLSN--GLSPRQEQIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGA 202

Query: 231 KTRSGAIA 238
             R+ A+A
Sbjct: 203 PNRAAAVA 210


>gi|269796804|ref|YP_003316259.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269098989|gb|ACZ23425.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 881

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 34/79 (43%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
              +  E   +AA     +     H+    +LT RE E    +S+G T+ EIA  L +S 
Sbjct: 792 ASAQFAEAQQIAADLGPGYLERLDHFEVGADLTHREQEVARLVSQGWTNQEIADTLVLSV 851

Query: 215 NTVNNYIASIMRKTATKTR 233
            TV N++    RK     R
Sbjct: 852 RTVENHLHRAYRKVGVDNR 870


>gi|241766529|ref|ZP_04764392.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241363243|gb|EER58807.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 239

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 70/194 (36%), Gaps = 15/194 (7%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-----LF 109
            + A+  + V  +     +   +  +  P  ++  + +      +       +     + 
Sbjct: 23  RLEATEHICVAGEAASVGESLPLAHALAPDIVLTDIRMPAASGIHLAAVFREQFPRVRVL 82

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
               H   E +     +  R   L    A+  I  +    +G       L ++   A   
Sbjct: 83  VLSMHDDAEYVRRAVSLGARGYVLKDAPAQQLIEAIEAVHQGGCYFSPGLEQLLDDAGSV 142

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   +S          LT RE   L W+SEG+++ EIA ++G S  TV  +   + RK  
Sbjct: 143 ARSNRS----------LTPREASVLQWVSEGRSNKEIAALMGTSVRTVETHRLHLRRKLR 192

Query: 230 TKTRSGAIAYAVRN 243
            + ++  + YAV +
Sbjct: 193 IEGQAALMKYAVDH 206


>gi|212709063|ref|ZP_03317191.1| hypothetical protein PROVALCAL_00095 [Providencia alcalifaciens DSM
           30120]
 gi|212687975|gb|EEB47503.1| hypothetical protein PROVALCAL_00095 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 34/66 (51%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             ++DV        T +E E +  + EG ++  IA++LG+S +TV  ++ +I  K     
Sbjct: 147 LMTFDVKPDSLVSYTPKEQEIIHLVREGASNKRIALLLGVSLSTVKTHLRNIFTKANVNN 206

Query: 233 RSGAIA 238
           R+  ++
Sbjct: 207 RTELVS 212


>gi|163737655|ref|ZP_02145072.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis BS107]
 gi|163740771|ref|ZP_02148164.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161385762|gb|EDQ10138.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis 2.10]
 gi|161389181|gb|EDQ13533.1| transcriptional regulator, LuxR family/sensory box protein
           [Phaeobacter gallaeciensis BS107]
          Length = 210

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 177 DVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           D+   + ++ LT RE E  + + EGKTS EIA  LG+S  TV  + A +++K      + 
Sbjct: 132 DLSRSRPYQPLTRREREVYSLLCEGKTSKEIARSLGLSYRTVEVHRARLLKKMGVSNTAA 191

Query: 236 A 236
            
Sbjct: 192 L 192


>gi|149370505|ref|ZP_01890194.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149356056|gb|EDM44613.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 214

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE ++ I+E  T+ EIA  L +S++T+ +Y  +++ K   +  +G   YA++   
Sbjct: 152 LTKREVEVISLIAEEFTTQEIADQLFLSKHTIESYRKNLITKLNVRNLAGLTKYAIKKGY 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|111019720|ref|YP_702692.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819250|gb|ABG94534.1| possible transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 785

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ELT R+ E    +++G T+ EIA  L IS  T   ++ +I+ K    +R+  + +
Sbjct: 718 ELTRRQREVAELVTDGLTNGEIASRLFISPRTAEGHVENILTKLGFTSRAQIVNW 772


>gi|302554479|ref|ZP_07306821.1| response regulator [Streptomyces viridochromogenes DSM 40736]
 gi|302472097|gb|EFL35190.1| response regulator [Streptomyces viridochromogenes DSM 40736]
          Length = 222

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE++ L  ++EG  + EIA  L  S  TV N +  +  +   + R+ A+A+A+R   
Sbjct: 162 MTPRELDVLRLVAEGLDTGEIASKLSYSERTVKNVMHGLTTRLHLRNRAHAVAHALREGY 221

Query: 246 V 246
           +
Sbjct: 222 I 222


>gi|284044064|ref|YP_003394404.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948285|gb|ADB51029.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 981

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 162 IGLLAAYQANMFKSYDVHWGKD------FELTGREVECLTWISEGKTSDEIAVILGISRN 215
           IGLL  +     +                 L+ RE E    ++ G T+ EIA  L +S  
Sbjct: 872 IGLLRPHAVRELRGLGRRVAAPAVGTGVPSLSEREREIAALVAAGGTNREIAAALVVSPR 931

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAV 241
           TV  ++ +++RK     R+  +A A+
Sbjct: 932 TVETHVRNLVRKLGVADRTE-VAAAI 956


>gi|267027596|gb|ACY78510.1| LuxR type regulator [Corynebacterium stationis]
          Length = 279

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V   +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  
Sbjct: 208 SPVRVKQSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYE 267

Query: 236 AIAYAVRNN 244
           A+  A R  
Sbjct: 268 AVNAARRIG 276


>gi|146299551|ref|YP_001194142.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146153969|gb|ABQ04823.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 209

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 91/215 (42%), Gaps = 27/215 (12%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM----------------ALS 93
             L +    +HF +  +  F++    SIV++   F +VR +                 LS
Sbjct: 4   VCLADNHPVTHFGVKSY--FKDHDQISIVANVGNFSMVRDILQTKEIDILILDLDLEGLS 61

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR-IGLMLL-FPKG 151
              +  ++L+   +    +F  L E +  P  +            ++  +GL ++   +G
Sbjct: 62  SIFEVKSILKNFPKTKIVIFSDLAEQMYAPNAIKAGVSGYVHKTEKLETLGLSIIKVHEG 121

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           +II+ + + +   L A Q+   + Y        +L+ RE+E L ++S+GK ++EI+ IL 
Sbjct: 122 KIIINETVRKNMALIAKQSKSERLYR-------KLSNREIEVLRYLSDGKKNNEISKILS 174

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  T++ Y   ++ K         +  A    I+
Sbjct: 175 LNEKTISTYKLRLLTKLNVTNLVDLVNKAKTLEII 209


>gi|307296141|ref|ZP_07575972.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Sphingobium chlorophenolicum L-1]
 gi|306878312|gb|EFN09534.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Sphingobium chlorophenolicum L-1]
          Length = 844

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 4/119 (3%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             D  +C    D      GL  L  +  ++         +L   ++      D    +  
Sbjct: 725 AGDRGFCRTAVDCG---WGLTSLLSEPDLLSAAHGPAAEVLGRLRSRYGICADTAGDQPV 781

Query: 185 E-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + LT RE E L  +  G TS  IA  + +S +T   +I +I  K   + RSGA++ A R
Sbjct: 782 DPLTARESEVLALLDSGLTSQAIADHIDLSLSTTKWHIQNIYNKLGVRNRSGALSRARR 840


>gi|88812156|ref|ZP_01127408.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Nitrococcus mobilis Nb-231]
 gi|88790660|gb|EAR21775.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Nitrococcus mobilis Nb-231]
          Length = 224

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT R+ E L  + EGK++  IA  L +  +TV  ++  IM+K     R+ A   A R
Sbjct: 150 LTPRQSEVLQLLREGKSNKIIAYELKMQESTVKVHVRQIMKKFKAINRTHAAFLANR 206


>gi|167753189|ref|ZP_02425316.1| hypothetical protein ALIPUT_01460 [Alistipes putredinis DSM 17216]
 gi|167659503|gb|EDS03633.1| hypothetical protein ALIPUT_01460 [Alistipes putredinis DSM 17216]
          Length = 203

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 2/116 (1%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
               +     R+  + +F     ++ D L  +   A    +     +     +  L+ RE
Sbjct: 80  LGKGYSAQFARMRQIDIFGGEERLVHD-LLCLRSEAPRPDHALPRQNGAPAANL-LSVRE 137

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E LT I++G  + +IA  L I   TV ++  +IM+K   ++ +  +  AV    V
Sbjct: 138 TEVLTLIAQGLLNKQIADRLQIGLTTVISHRRNIMQKLGVQSVAALVICAVSMGYV 193


>gi|217972053|ref|YP_002356804.1| LuxR family transcriptional regulator [Shewanella baltica OS223]
 gi|217497188|gb|ACK45381.1| transcriptional regulator, LuxR family [Shewanella baltica OS223]
          Length = 221

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|17549072|ref|NP_522412.1| transcription regulator PRHJ transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|3688537|emb|CAA07191.1| PrhJ [Ralstonia solanacearum]
 gi|17431323|emb|CAD18002.1| transcription regulator prhj transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|219566941|dbj|BAH04972.1| transcription regulator [Ralstonia solanacearum]
          Length = 174

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G +   + +  +       +   LT R+ + L   + GK++ EIA  L IS  TV +++
Sbjct: 83  LGRILDARRHGPEPRPDGGARLSALTPRQHDILREAAHGKSNVEIAQTLHISVETVKSHV 142

Query: 222 ASIMRKTATKTRSGAIA 238
             I+ +   + R+   A
Sbjct: 143 RQILMRLDARNRTELAA 159


>gi|120597637|ref|YP_962211.1| response regulator receiver protein [Shewanella sp. W3-18-1]
 gi|146294224|ref|YP_001184648.1| response regulator receiver protein [Shewanella putrefaciens CN-32]
 gi|120557730|gb|ABM23657.1| transcriptional regulator, LuxR family [Shewanella sp. W3-18-1]
 gi|145565914|gb|ABP76849.1| transcriptional regulator, LuxR family [Shewanella putrefaciens
           CN-32]
          Length = 209

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 144 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 198


>gi|109898298|ref|YP_661553.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109700579|gb|ABG40499.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 213

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   +  +  I   +  L    + +  + + ++  +   Q   F       GK  +LT 
Sbjct: 101 GYIPKSTPLPVIADAVRELLEGEQWLPNELVEQVQKIEDSQEQAF------AGKLAQLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            +++ L  +++G  + +IA  LG+S +T+  ++++++ K     R+ A
Sbjct: 155 HQLKVLQLMADGLLNKQIAYELGVSESTIKQHVSAVLHKLGFNNRTQA 202


>gi|319427568|gb|ADV55642.1| transcriptional regulator of curli operon, CsgD [Shewanella
           putrefaciens 200]
          Length = 221

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|312890536|ref|ZP_07750072.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296994|gb|EFQ74127.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 206

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE+E    I +   + +IA  L IS  TV  +  +I+RK       G + YA  N I
Sbjct: 146 FTTREIEIFRLIVKEFNNKQIAQKLFISERTVETHRRNILRKADAVNIVGLVKYAYENKI 205

Query: 246 V 246
           V
Sbjct: 206 V 206


>gi|288961802|ref|YP_003452112.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914082|dbj|BAI75568.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 300

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 3/122 (2%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILR---DRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             Y       A   + L L+     ++     D      L    +      ++       
Sbjct: 167 RGYLLNRMAPAAFVLSLRLIHAGEPVVPEECFDYFSPSALRRGAEDGSVPQHETELLGYP 226

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  R    L  I +G ++ EIA  + ++ + V  ++  IM+    + R+ A  +A ++ 
Sbjct: 227 GLYPRHARILKLIMDGCSNKEIAREMAMTEDLVKLHVRHIMQTINVRNRTQAALWAAQSG 286

Query: 245 IV 246
           I+
Sbjct: 287 II 288


>gi|239927963|ref|ZP_04684916.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 219

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 3/176 (1%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++    +V  D     V  +A +E  +       P  +    FH   + +         +
Sbjct: 41  DRTRPDVVLMDIRMPTVDGLAATETLR--RRADAPQVVVLTTFHADEQVLRALRAGAAGF 98

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  A I   +  +     ++      ++   AA  A   +       +   L  RE
Sbjct: 99  VLKDTPPAEILAAVRRVAAGDPVLSPAVTRQLMAHAAGTAADTRRAHARQ-RIAALNDRE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E    +  G  + EIA  L +S  TV  +++  + K     R      A    ++
Sbjct: 158 REVAVAVGRGLANAEIAARLFMSVATVKTHVSRTLAKLGLNNRVQIALLAHDAGLL 213


>gi|167623632|ref|YP_001673926.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167353654|gb|ABZ76267.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 219

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 66/169 (39%), Gaps = 15/169 (8%)

Query: 77  IVSSDWPFDLVR-CMALSEKDKYYNVL---QRPTELFCPVFHTLPENITP---PAGMDNR 129
           + SSD  +D+V   + +     Y  ++       EL   V     +N+T         + 
Sbjct: 47  LESSDIEYDVVLLDLQMPGSHGYSTLIHLRTHFQELPVVVISAHEDNLTISRAIHYGSSG 106

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +   +  +  +   L  +      + +    E+  +   + N   S      K  +LT +
Sbjct: 107 FIPKSSSMETLAEALEAVLFGDIWLPQG--VELQEINEDETNQMAS------KLADLTPQ 158

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 159 QYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|312887768|ref|ZP_07747356.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311299754|gb|EFQ76835.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 316

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   I I  + +    + I + R     +L  +  N+  +        + LT  E+E   
Sbjct: 202 NTGIIAISFLFIV---KSIKKARSEYRRMLQLHMDNVNPAIIQENFIRYGLTKMEIEIAQ 258

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            I +G  + +IA  L IS  TV  +I +  +K   K RSG I
Sbjct: 259 LILKGMGNKDIAEALHISEETVKKHIYNTFKKVKVKNRSGLI 300


>gi|289168290|ref|YP_003446559.1| response regulator [Streptococcus mitis B6]
 gi|288907857|emb|CBJ22697.1| response regulator [Streptococcus mitis B6]
          Length = 198

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y    ++     +G+       + +  D L +  L   Y      S +V       LT 
Sbjct: 84  GYSKKMYEHRAKVMGVYGFL--DKSMDPDELVK-KLEKIYLGGKVFSDEVMVEM---LTP 137

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE+E L  +  G T D++   + +S+ TV+N++A+I  K     R  AI  A +  
Sbjct: 138 REIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIAEQLG 193


>gi|188575417|ref|YP_001912346.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519869|gb|ACD57814.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 204

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           LL A  A   K       K  +      L+ RE + L+ +  G T+  +A  LGI+  TV
Sbjct: 115 LLPAMVAEPAKQIPTRRRKPLQDDRLGALSKREKQVLSLLPRGLTNASLAAELGIAPGTV 174

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
              +  I++K   K R+ A  YAV++ +
Sbjct: 175 KVQVERILQKLEVKDRTQAAVYAVQSRL 202


>gi|167744316|ref|ZP_02417090.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167924475|ref|ZP_02511566.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
          Length = 87

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 7   AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 66

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 67  ASSRKHAVRRALVLGLL 83


>gi|111219694|ref|YP_710488.1| putative transcriptional regulator [Frankia alni ACN14a]
 gi|111147226|emb|CAJ58876.1| putative transcriptional regulator [Frankia alni ACN14a]
          Length = 769

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 23/195 (11%)

Query: 50  YALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
            +L +++GAS    ++ WD     +L+            R + +          ++P  L
Sbjct: 590 ASLRDWLGASACVEVMVWDAVDLGRLEY---------AARLLGIGRMLCRAMGGRQP--L 638

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
           F   F T              Y         +            + + + +  +  +++ 
Sbjct: 639 FGSAFLTARRA---------EYVEGIRHATGVENFQREFAAGLALDIEEAIDFVLDMSSV 689

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +A++    D   G    LT RE E    I +G ++ +IA  L ISR TV  ++  I+ K 
Sbjct: 690 RASLTVPPDRSHGD--ALTAREREISRLIYQGLSNADIAGSLTISRRTVEGHVNRILAKL 747

Query: 229 ATKTRSGAIAYAVRN 243
             ++RS    +  R 
Sbjct: 748 NFRSRSQVAVWMARR 762


>gi|299770091|ref|YP_003732117.1| response regulator [Acinetobacter sp. DR1]
 gi|298700179|gb|ADI90744.1| response regulator [Acinetobacter sp. DR1]
          Length = 239

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++  +     + LT RE E +  +S+G +  E+A +LGI   T+  ++ + MRK     R
Sbjct: 171 QALPLDLSTQYGLTPREQEVVHLVSKGLSDKEVASLLGIGFTTLRTHLNNAMRKIGCNNR 230

Query: 234 SGAI 237
           +   
Sbjct: 231 TEMA 234


>gi|298250649|ref|ZP_06974453.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548653|gb|EFH82520.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 219

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 171 NMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            + + Y+ H     E LT RE   L  I +G  + EIA  L IS  TV  Y+ S+  K  
Sbjct: 134 EVLEKYEGHALIQVERLTNREFAVLRLIIQGTRNSEIAQRLAISIKTVEAYLTSLYGKLG 193

Query: 230 TKTRSGAIAYAVRNNIV 246
            ++R+  IA A +  ++
Sbjct: 194 VQSRAEVIALAQKQGLL 210


>gi|257063010|ref|YP_003142682.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790663|gb|ACV21333.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 505

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 3/111 (2%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           ++      F       G +      R+   D R  E+ ++  ++A   +  DV    ++ 
Sbjct: 382 EDGGFLFEFSDRTKSDGDVSPTVADRMRDPDPRDMEVSVVIFHEAVNRRCADVAG--EYG 439

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE E L  I +G +  E+A  L IS  TV  +I  I RK     R   
Sbjct: 440 LSNREEEVLVHIMQGNSIQEVADKLFISPGTVKTHINHIYRKMGVTRRYEL 490


>gi|194291803|ref|YP_002007710.1| response regulator, luxr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225707|emb|CAQ71653.1| putative Response regulator, LuxR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 220

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L  ++ G+++  IA  +G+S NTV  ++A+I+      +R  AI  A R  +
Sbjct: 156 LTPRQLEVLHQLTLGRSNKVIAYHMGLSENTVRVHVAAILDHLGVVSRVEAILEAQRRGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|167755832|ref|ZP_02427959.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402]
 gi|167704771|gb|EDS19350.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402]
          Length = 67

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  LT RE E    + + +++ +IA  LGIS  TV N+I+++++K    +R  A+
Sbjct: 2   NIILTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAV 56


>gi|120406868|ref|YP_956697.1| regulatory protein LuxR [Mycobacterium vanbaalenii PYR-1]
 gi|119959686|gb|ABM16691.1| regulatory protein, LuxR [Mycobacterium vanbaalenii PYR-1]
          Length = 1085

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E++ +  +SEG ++ +IA  L +S  TV  ++  +  K    +R      A R+
Sbjct: 1027 LTPTELDVVGLVSEGLSNKDIAARLFVSPRTVQTHLTHVYTKLCLASRVQLAQEAARH 1084


>gi|66046528|ref|YP_236369.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257235|gb|AAY38331.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
          Length = 220

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 3/140 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +        P+ I     +  +   L    A      +         L   +    +  A
Sbjct: 79  VLILSMQNDPDMIMRALDIGAQGYLLKDTTAAELEQALGALRGNERYLSPGIAHTVIERA 138

Query: 168 YQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +    +S      K+ + LT R++E L  I  GK++ EIA  LG+S  T+  + A +M+
Sbjct: 139 LRGK--RSDRARSAKERYHLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMK 196

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +      +G + + VR  I+
Sbjct: 197 RLQIFDVAGLVLFCVRERII 216


>gi|319788214|ref|YP_004147689.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466726|gb|ADV28458.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 200

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 56/171 (32%), Gaps = 23/171 (13%)

Query: 82  WPFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTF 135
            P  LV  + +      D    + +    +   +  T          +D     Y     
Sbjct: 47  QPDLLVTDIEMPGLGGLDLAARIARHELPVKVVIVTTFARAGFLRRALDAGVRGYLLKDA 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              R+   L  +   GR I      E+ L A             W +   L  RE + L 
Sbjct: 107 PPERLAEALRTVHRGGRAIDP----ELALEA-------------WTEADPLNERERQVLR 149

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              EG +S  IA  LG+S  TV NY++  + K     R  A   A +  ++
Sbjct: 150 LAGEGLSSTRIAERLGLSHGTVRNYLSEAIGKLGAANRVEAHRIARQRGLL 200


>gi|311696074|gb|ADP98947.1| two component transcriptional regulator, LuxR family [marine
           bacterium HP15]
          Length = 257

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R++  L  +S+G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 192 LTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRKLGVHNRVQAILSA 246


>gi|317132401|ref|YP_004091715.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470380|gb|ADU26984.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
          Length = 208

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 31/208 (14%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           L+V  D      L +IV +D        +++           R  E   P    +   + 
Sbjct: 4   LIVDDDPLVSTSLKTIVEAD------EEISVCGTGGSAADAARLYEQLVPDILLMDIRMG 57

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL-------------AAY 168
              G+D     ++       + L        II   R+   G L             A Y
Sbjct: 58  KQTGLDAGREVISRHHDARVLFLTTFADDDYIIEALRIGAKGYLLKQNFESIVPALKAVY 117

Query: 169 QANMFKSYDV---------HWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNT 216
                   D+         H   DF    LT +E   L  I+EG ++ EIA  + +S  T
Sbjct: 118 AGQTVFGEDIVAKIPSYFGHVPPDFSAYGLTEKESGLLALIAEGLSNKEIASRVFLSEGT 177

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNN 244
           V N I++I+ K   + R+    +  +  
Sbjct: 178 VRNSISAILEKLHLRGRTQLAVFYYKCG 205


>gi|262370891|ref|ZP_06064215.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
 gi|262314253|gb|EEY95296.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
          Length = 216

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y   +   + I   +  +      +  +      L A    +   + +    +  + 
Sbjct: 98  AMGYIPKSAHPSHIGEAIREVLDGEIWLPPN------LPANMNFDPRAADETALAERIQS 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 152 LTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|304383484|ref|ZP_07365946.1| transcriptional regulator [Prevotella marshii DSM 16973]
 gi|304335403|gb|EFM01671.1| transcriptional regulator [Prevotella marshii DSM 16973]
          Length = 212

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +  IR  L+      R I + R+ E+         +        GKD  LT  E E L 
Sbjct: 106 SLPEIREALLFALRGQRYICQ-RMAEL---------LLTPVPSACGKDL-LTKTETEILK 154

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G T+ EIA     S +TVN +  +I RK A  T   A  YA+R  ++
Sbjct: 155 DIALGMTTREIADKRYSSFHTVNTHRKNIFRKIAVNTAYEATKYALRAGLI 205


>gi|291540325|emb|CBL13436.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis XB6B4]
          Length = 261

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            H   +FEL+ RE E L  +  G ++ +IA  +GIS +TV  ++  I  K    TR+  
Sbjct: 191 THLAAEFELSEREKEALLCMDGGMSNAQIAENMGISLSTVKKHVYHIFEKVGVDTRAQL 249


>gi|254563681|ref|YP_003070776.1| two-component LuxR family transcriptional regulator
           [Methylobacterium extorquens DM4]
 gi|254270959|emb|CAX26964.1| putative two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens DM4]
          Length = 216

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 21/182 (11%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +V      +L+  +    K     V  R      P +      +   AG       +   
Sbjct: 30  VVDVSNSSELINSLRSPLKTDLVIVGSRLLPAGDPTYLGA---LKRAAGTARLLLVVPHA 86

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEI----------GLLAAYQANMFKSYDV-------- 178
            A +    + L   G I+ R R  E+           L A       K  D         
Sbjct: 87  SADLFQDALSLGFHGLIVRRQRHEEMLEAVRTTLDGRLYAPTTILAVKPPDAGAALRQPE 146

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              + F LT R+ E L  I +G ++ EIA+ L I+  TV  ++++++R    + R+ A  
Sbjct: 147 RSVRTFGLTLRQREVLALIGKGLSNREIAIALSIAEATVKIHVSAVIRMLGVRNRTEAAL 206

Query: 239 YA 240
            A
Sbjct: 207 LA 208


>gi|269955052|ref|YP_003324841.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303733|gb|ACZ29283.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 216

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 22/222 (9%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+I +D  +     +  L   VG      V       + + ++V+   P  +V  + +  
Sbjct: 2   RVIVVDDALLTRAGLVRLLAEVGVD----VVAQAADARDIQALVADHDPDVVVLDIRMPP 57

Query: 95  KD------KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV-ARIRIGLMLL 147
                       + +   EL   V     E       ++     + + +  R+    +L+
Sbjct: 58  TFTDEGLLAASALHRERPELGLLVLSQYLETEYAMRLIEEHPEGVGYLLKDRLFDIAVLV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               RI   + + +  ++A       +   V       LT RE E L  I+EG ++  IA
Sbjct: 118 DALRRIAEGETVIDPTIVARLLGRRRRQDPVDR-----LTPREREVLALIAEGLSNQAIA 172

Query: 208 VILGISRNTVNNYIASIMRKTATKT------RSGAIAYAVRN 243
             L ++  TV  ++ SI  K           R  A+   +R+
Sbjct: 173 QRLVVTERTVETHVTSIFMKLELADDATTHRRVQAVLRYLRH 214


>gi|223935182|ref|ZP_03627100.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896066|gb|EEF62509.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 267

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 67/223 (30%), Gaps = 23/223 (10%)

Query: 35  RMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++  D        + AL       + VG +        + Q+   D I+  D    L+ 
Sbjct: 32  RVLLADDHTVVRQGLRALLSGEKDIQIVGEAGTGREAVQMAQKLTPDVILM-DIAMPLMN 90

Query: 89  CMALSEKDKYYNVLQRPTELFCP-----VFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  + K        +   L        V        +           L   V     G
Sbjct: 91  GLEATRKIAEVAPSAKVLVLSSYGEDDYVQKLTEAGASGYLIKHAAANDLVAAVRETHKG 150

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                P     LRD           Q     +        FELT RE+E L  I  GK +
Sbjct: 151 NAFFSPGIAKRLRD-----------QVRAGFANGNGTKASFELTERELETLGHIVAGKPN 199

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  +GIS  TV  +   +M K      +    YA+   ++
Sbjct: 200 KVIACDMGISIKTVEKHRQQVMNKLNIHEVASLTRYAIAKGMI 242


>gi|172041269|ref|YP_001800983.1| LuxR family transcriptional regulator [Corynebacterium urealyticum
           DSM 7109]
 gi|171852573|emb|CAQ05549.1| putative transcriptional regulator (LuxR family) [Corynebacterium
           urealyticum DSM 7109]
          Length = 291

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIA 207
                +L  R+ +  L    +A   +       K   +L+ RE++ L+ ++ G T+ E A
Sbjct: 192 HSKLRMLAGRVEDETLRRDLEALCTQMVSPVRVKQTTKLSARELDVLSCVALGHTNVEAA 251

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             +GI   TV +Y+ S+MRK    TR  A+  A R  
Sbjct: 252 EEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 288


>gi|329923008|ref|ZP_08278524.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941781|gb|EGG38066.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 202

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  ++ G ++ EIA  L IS  TV N ++ I+ K   + R+    Y  R +
Sbjct: 142 DLTPRENDILGLVALGCSNREIAEQLFISEGTVRNTLSIILDKLELRDRTQLAIYYWRQS 201

Query: 245 I 245
           +
Sbjct: 202 L 202


>gi|331699627|ref|YP_004335866.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954316|gb|AEA28013.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 899

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           ++  +          R G+ LL      + R         A         +    G    
Sbjct: 785 VEAGFGRALVAAGERRPGVDLLRTAHDRLTRLGAAPFAERADELLRAAGLHPPAAGGALA 844

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E+     ++EG+T+ E+   L ++  TV  ++++I  K    +R    A+
Sbjct: 845 LTPQELAVARLVAEGRTNSEVGASLFVTGRTVAFHLSNIYAKLGISSRRQLAAH 898


>gi|296283884|ref|ZP_06861882.1| transcriptional regulator, AraC type [Citromicrobium bathyomarinum
           JL354]
          Length = 822

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +  ++            EL+ RE + L  ++ G +  E+A  LGIS + V  ++  + +
Sbjct: 743 HFLRSVMNRDRAARASASELSKRETDVLRALATGGSDKELARELGISDHGVRFHLKGVFK 802

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K     R  A+  A     +
Sbjct: 803 KLGVHDRLSAVVRAQEKGWI 822


>gi|292488978|ref|YP_003531865.1| Nitrate/nitrite response regulator protein [Erwinia amylovora
           CFBP1430]
 gi|292900115|ref|YP_003539484.1| nitrate/nitrite responsive two-component response regulator
           [Erwinia amylovora ATCC 49946]
 gi|291199963|emb|CBJ47087.1| putative nitrate/nitrite responsive two-component response
           regulator [Erwinia amylovora ATCC 49946]
 gi|291554412|emb|CBA21869.1| Nitrate/nitrite response regulator protein homolog [Erwinia
           amylovora CFBP1430]
          Length = 209

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E L  ++ G  + ++A  L IS  TV  +I +++RK   ++R  A  
Sbjct: 150 LTAREQEVLKEVASGLPNKQVAENLAISEQTVKVHIRNVLRKLNVRSRVAATV 202


>gi|269968356|ref|ZP_06182375.1| Nitrate/nitrite response regulator protein narP [Vibrio
           alginolyticus 40B]
 gi|269827042|gb|EEZ81357.1| Nitrate/nitrite response regulator protein narP [Vibrio
           alginolyticus 40B]
          Length = 76

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE + L  ++ G  + +IA  L IS +TV  ++ S+++K    +R+ A  
Sbjct: 14  LTDRESQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATV 66


>gi|229107368|ref|ZP_04237236.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228676097|gb|EEL31074.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 194

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + I+ D+L +I L+   +   +      + +  ELT  E + L  + +G    EIA +L
Sbjct: 98  NKNIMPDKLLQI-LIEINEGTCYFPMSTDYVE--ELTHSEKQILQLLCDGYKRKEIASML 154

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             S  T++N+I  I  K    +   A+   +++  +
Sbjct: 155 YASERTISNHIQHIFDKLDVSSSLEAVTKGIKSGYI 190


>gi|257067005|ref|YP_003153261.1| two component transcriptional regulator, LuxR family [Anaerococcus
           prevotii DSM 20548]
 gi|256798885|gb|ACV29540.1| two component transcriptional regulator, LuxR family [Anaerococcus
           prevotii DSM 20548]
          Length = 198

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           KS +        LT RE+E L  + +G    +IA  L IS  T+ N+IA+I  K   K  
Sbjct: 122 KSKESTKSIKDPLTNRELEVLEELIKGSRKKDIAQKLYISERTLYNHIANIYEKLGAKNI 181

Query: 234 SGAIAYAVRNNIV 246
             A   A+    +
Sbjct: 182 VEAYNKAMELGYI 194


>gi|237785039|ref|YP_002905744.1| LuxR family transcriptional regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757951|gb|ACR17201.1| transcriptional regulator, LuxR family [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 279

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +  +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 210 VRVKQTTKLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 269

Query: 238 AYAVRNN 244
             A R  
Sbjct: 270 NAARRIG 276


>gi|296123997|ref|YP_003631775.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296016337|gb|ADG69576.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 217

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-AGMDNRY 130
           + L  +V  D     +    L E+ ++    +RP ++     +   +++          +
Sbjct: 46  RTLPDVVVLDLSIPHLNGFELLEQLQH---QKRPPKVLVVTANEDLDSLQRSWNLGAAGH 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +       + + +  +    ++       +     A +   F            L+ RE
Sbjct: 103 LAKRSAADELIVAIRKIAAGEKVFPSKEESK-----AVKTLGFNETSGRLTGAESLSERE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            E L  I+ G  + EIA  L IS  TV  Y +  M+K + + R+  + +A++  
Sbjct: 158 TEVLKLIAAGHMAKEIAAKLDISLKTVETYKSRGMQKLSLRGRTELVRFAMKMG 211


>gi|303240539|ref|ZP_07327055.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302591941|gb|EFL61673.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 210

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 37/68 (54%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               +F LT RE+E +  IS+GK+  EI  ++ +S  TV N +  ++ +     R     
Sbjct: 143 REALEFNLTDREIEIIKHISDGKSYKEIGEVIHLSEGTVRNMVYELLGRFNLNDRIQLAV 202

Query: 239 YAVRNNIV 246
           +AV+NNI+
Sbjct: 203 FAVKNNII 210


>gi|289768026|ref|ZP_06527404.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289698225|gb|EFD65654.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 895

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            LL       L +     G   A+   +    D+      EL+GRE + L  ++   +++
Sbjct: 794 PLLATAPLHELAEGWLRPGRPRAHGEPVRSGPDLALLVPVELSGRERDVLRRLARMMSAE 853

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S NTV  ++ S  RK A   R  A+  A    ++
Sbjct: 854 EIAADLYVSVNTVKTHLKSAYRKLAVNRRGDAVRRARDLGLL 895


>gi|269793570|ref|YP_003313025.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269095755|gb|ACZ20191.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 862

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 41/108 (37%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
              L      +    +L   +     RD   ++G   A  A              +LT R
Sbjct: 745 AEILLAAGEPLEAVNLLRSAREIFDRRDMRLQLGRAQAGLARAEAMLARLSEPLGQLTPR 804

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E E L  +  G  + EIA  L +S+ T  N+++ ++RK    +R  A 
Sbjct: 805 EREVLELVVAGLKNGEIAERLTLSKRTAENHVSRLLRKLGVSSREEAA 852


>gi|167851329|ref|ZP_02476837.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|167899971|ref|ZP_02487372.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
          Length = 85

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 5   AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 64

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 65  ASSRKHAVRRALVLGLL 81


>gi|127512655|ref|YP_001093852.1| LuxR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637950|gb|ABO23593.1| transcriptional regulator, LuxR family [Shewanella loihica PV-4]
          Length = 208

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +LR +      L +  A+  +           LT RE E L  +  G T+ +IA  L +S
Sbjct: 118 VLRGQTVIPHALLSASADQEQLDGAD-----NLTIREREVLQALLSGSTNVDIANQLFVS 172

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
            +T+  ++  + RK    +R  AIA+A
Sbjct: 173 ESTIKTHLYRVFRKIGVSSRGQAIAWA 199


>gi|298247497|ref|ZP_06971302.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297550156|gb|EFH84022.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1055

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 6/160 (3%)

Query: 88   RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            R + L+E + +        E    V  +  ++ T      N + +L+       + L+L 
Sbjct: 899  RLLMLTESEGHIRPYLDAGEAMEQVLQSFLDDTTGMEDTANAFPTLSIS----HVSLLLQ 954

Query: 148  FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDE 205
              K     R R            +M    D    +     LT +E   L  +  G+T  E
Sbjct: 955  SFKEEKTRRARKKMEQASQVEPTHMLTPGDKPLSQVLLEPLTTQEQRVLRLLIAGQTYAE 1014

Query: 206  IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +A  L +SRNT+  ++ SI RK     R  AI  A R ++
Sbjct: 1015 MAETLIVSRNTIKTHVTSIYRKLGVNRRLDAIVLAQRLHL 1054


>gi|293610601|ref|ZP_06692901.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|292826945|gb|EFF85310.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|325123833|gb|ADY83356.1| two component transcriptional regulator, LuxR family [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 216

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y   +   + I   +  +      +  +      L +    +   + +    +  + 
Sbjct: 98  AMGYIPKSAHPSHIGEAIRQVLEGDIWLPPN------LPSNLNLDPRAADETALAERIQS 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 152 LTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|150377494|ref|YP_001314089.1| autoinducer-binding domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150032041|gb|ABR64156.1| Autoinducer-binding domain protein [Sinorhizobium medicae WSM419]
          Length = 320

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 8/145 (5%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMD-NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +        V H +   +T P          LTF  +  +  +  L      I      +
Sbjct: 183 ELRRFKDQAVAHGIRSGVTVPVEGSFGSKMMLTFASSERKADVSKLQDAQDAI------Q 236

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             L+  Y+  +  +  +   K   L+ RE  CL W  +GK   E A I GI   TV +Y+
Sbjct: 237 AVLVIHYRLKILAAVTIVSPKTM-LSPREAMCLMWAMKGKNGPETAKITGIKPRTVQHYL 295

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +  RK   ++    +A A  + +V
Sbjct: 296 DNARRKLGAQSVPHLVAIARDHGLV 320


>gi|150005395|ref|YP_001300139.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254883802|ref|ZP_05256512.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294777176|ref|ZP_06742633.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|319643530|ref|ZP_07998153.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|149933819|gb|ABR40517.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254836595|gb|EET16904.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294449045|gb|EFG17588.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|317384935|gb|EFV65891.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 203

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D   G+   L+ RE E +  +  G T+ E A  L +S +TV  +  +I RK    + +G
Sbjct: 124 VDETDGEQEALSQREKEIICCVVRGMTNKETAEKLFLSIHTVITHRRNIARKLQIHSPAG 183

Query: 236 AIAYAVRNNIV 246
              YA+ N +V
Sbjct: 184 LTIYAIVNKLV 194


>gi|114706362|ref|ZP_01439264.1| probable transcriptional regulator protein, LuxR family
           [Fulvimarina pelagi HTCC2506]
 gi|114538223|gb|EAU41345.1| probable transcriptional regulator protein, LuxR family
           [Fulvimarina pelagi HTCC2506]
          Length = 260

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE+  L  +++GK +  +A  L I+ +TV  ++  +M K     R+ A A
Sbjct: 191 LTPRELSVLELVAQGKPNKLVANRLSITEHTVKLHLHKLMGKLHVTNRTEAAA 243


>gi|111017070|ref|YP_700042.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110816600|gb|ABG91884.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 215

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L +    AA    +  +     G    LT +E   L  + EG T+ +IA  + ++  TV 
Sbjct: 124 LLDSRAAAALMVKVRANAGEKDGIFGHLTNQERTLLALLGEGLTNRQIAARMFLAEKTVK 183

Query: 219 NYIASIMRKTATKTRSGAIAYAVR 242
           NY++ ++ K   + R+ A   A +
Sbjct: 184 NYVSRLLTKLGVERRTQAAVLATK 207


>gi|329767671|ref|ZP_08259190.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341]
 gi|328839021|gb|EGF88609.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341]
          Length = 199

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +     L+ +E   L  I EG ++ EIA  L +S  T+ NYI++I+ K   K R+ A+  
Sbjct: 133 FTNHNPLSNQEKIILLKIKEGLSNKEIANELFLSEGTIRNYISNILTKLNCKNRTEAVKK 192

Query: 240 AVRNN 244
           +    
Sbjct: 193 STEEG 197


>gi|256831896|ref|YP_003160623.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256685427|gb|ACV08320.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 218

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 5/142 (3%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   V     + +         Y +       +   ++ +   G  +   RL    L 
Sbjct: 81  KFLALSVSDAAEDVVAVIRAGARGYVTKNIAPDELADAMVRV-RDGDAVFSPRLAGFVLD 139

Query: 166 A-AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           A   Q     + D    +   L+ RE E +  I+ G    E+A  L IS  TV ++++++
Sbjct: 140 AFGTQHADIATTDDELDR---LSAREQEVMRLIARGYAYREVASELFISVKTVESHVSAV 196

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           +RK    +R     +A    ++
Sbjct: 197 LRKLQLSSRHELTRWAAARRLL 218


>gi|72162244|ref|YP_289901.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71915976|gb|AAZ55878.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 215

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 2/156 (1%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+       +   P  +    F                +         +   +  ++  
Sbjct: 62  GLTAAAHLAELPNAPKVVLLTTFDLDEYVHRGLRAKAVGFLLKDTPPRDLITAVRTVYEG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++         +L  + A    S      +   L+ RE   L  ++ G ++ EIA  L
Sbjct: 122 NAMLAPSVTKR--MLERFAAPSGNSAAEAARRLEVLSERERAVLVGVARGLSNAEIAAEL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+   TV  +++ I+ K     R      A    +V
Sbjct: 180 GMREATVKAHVSRILTKLEKNNRVQIAILAHDAGLV 215


>gi|293606796|ref|ZP_06689147.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292814800|gb|EFF73930.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 221

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 14/167 (8%)

Query: 86  LVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           LV  M++  +D    + Q          L   +               + Y +       
Sbjct: 55  LVLDMSMPGRDGVDLIRQIKHCHPDLRILVLTMHGEQQYAAQAIKAGASGYLTKDSAADE 114

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   GR +       I       +++             L+ RE+     ++ 
Sbjct: 115 LVQAVRKVAAGGRYLSPSLAESIAFERQEHSDVLP--------HLLLSDRELSVFRHLAS 166

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + +IA  L +S  TV+ Y + I+ K   + ++  + YA+R++++
Sbjct: 167 GLNNSDIARRLFLSDKTVSTYKSRILTKMNLRNQTDLVRYAIRHHLI 213


>gi|241889344|ref|ZP_04776645.1| two-component response transcriptional regulator [Gemella
           haemolysans ATCC 10379]
 gi|241863887|gb|EER68268.1| two-component response transcriptional regulator [Gemella
           haemolysans ATCC 10379]
          Length = 199

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +  +     LT +E   L  I EG  + EIA  L +S  T+ NYI++
Sbjct: 117 VLAGNKEYSPELMENIFNSHNPLTNQEKIILLKIKEGLPNKEIANELFLSEGTIRNYISN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   K R+ A+  +    
Sbjct: 177 ILTKLNCKNRTEAVKKSTEEG 197


>gi|256393953|ref|YP_003115517.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256360179|gb|ACU73676.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 866

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT R+ + L  I++G T+  IA  L IS  TV++++++I+ K     R+ A   
Sbjct: 797 REHPLGLTRRQHDVLGLIADGHTNARIAEQLFISAKTVDHHVSAILAKLQAPDRAAAGRI 856

Query: 240 AVRNNI 245
           A R+ +
Sbjct: 857 A-RSGV 861


>gi|288960823|ref|YP_003451163.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913131|dbj|BAI74619.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 883

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 46/124 (37%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           P        +++   A      +  F      L +R  +  +     A      ++H   
Sbjct: 758 PEACAVLGEAISLAQASGMCRSLRAFANHGRDLSEREPKETVDRGNPAIPTTPKELHALG 817

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT +E E LT +S   ++ EIA  + I   T+  ++ ++  K     R  A+A A  
Sbjct: 818 AGLLTTKEREVLTLLSRNLSNKEIARAMDIGEQTIKWHMKNLFGKLNAAGRKHAVARARL 877

Query: 243 NNIV 246
             +V
Sbjct: 878 LGLV 881


>gi|91794445|ref|YP_564096.1| regulatory protein, LuxR [Shewanella denitrificans OS217]
 gi|91716447|gb|ABE56373.1| transcriptional regulator, LuxR family [Shewanella denitrificans
           OS217]
          Length = 222

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   +  +S G  + EIA  L IS +TV  +++S+ RKT ++ R   + +A
Sbjct: 157 LTNRERTIIQLVSSGARNKEIAHRLCISEHTVKAHLSSVFRKTQSRNRVELLRWA 211


>gi|28871830|ref|NP_794449.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28855083|gb|AAO58144.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 199

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +R   +   + R  +           +L+        + A  +               LT
Sbjct: 87  DRDAIVCEAIQRGAVEFHSKTECPEHLLQ-------RIQALLSGEPPEPRTIASTPLTLT 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ + L  + +G T+ EIA  L  S +TV +++ +I+       R+ A   A R  +V
Sbjct: 140 SRQRQVLGLLCQGLTNKEIASQLWRSEHTVRSHVQAILTILQASCRTEAADTARRLGLV 198


>gi|72162179|ref|YP_289836.1| regulatory protein LuxR [Thermobifida fusca YX]
 gi|71915911|gb|AAZ55813.1| regulatory protein, LuxR [Thermobifida fusca YX]
          Length = 917

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 68/196 (34%), Gaps = 25/196 (12%)

Query: 60  HFLLVRWDLFQEQKLDSIVSS--DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           H++     + + Q+ ++ ++S   W         L+       ++ R   L      T  
Sbjct: 725 HYVEAAVHIGETQRAEAALASFEQWANATQSPNDLA-------LVARCRALLSD-GETAR 776

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-----------EIGLLA 166
           E       +  R      + AR R+    L  + R+    R             E  LL 
Sbjct: 777 EYFEEALNLHRRGGGGGIEEARTRMAYGTLLRRSRLPSAARPHLRAAVEAFTRLETPLLL 836

Query: 167 AYQANMFKS----YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                  ++     D        LT ++ +    ++EG T+ EIA  L IS  TV +++ 
Sbjct: 837 QQAKEQLRATGEALDDTPAPTAGLTPQQEQIARLVAEGATNREIAQRLYISPRTVEHHLR 896

Query: 223 SIMRKTATKTRSGAIA 238
           +I R+   ++R     
Sbjct: 897 NIFRQLQIRSRVELAR 912


>gi|85059257|ref|YP_454959.1| putative two-component response regulator [Sodalis glossinidius
           str. 'morsitans']
 gi|84779777|dbj|BAE74554.1| putative two-component response regulator [Sodalis glossinidius
           str. 'morsitans']
          Length = 211

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------LTGRE 190
           +A   +G +L   + +++L   L  + +  +Y         +H     E      LT RE
Sbjct: 96  LAAGALGYVLKNSRQQVLLA-ALQTVAVNKSYIDPALNREMIHTALSMEAENQELLTPRE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  I++G T+  IA  L IS  TV  +  +IMRK      +  +  + R  +
Sbjct: 155 RQILKLIADGYTNRLIAEQLCISVKTVETHRLNIMRKLNVHKVTELLNCSRRLGL 209


>gi|302036302|ref|YP_003796624.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604366|emb|CBK40698.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 216

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 8/176 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++    +V  D     +  +  + + +      R   L   ++                Y
Sbjct: 46  KELDPDVVLMDIAMAGMNGLEATRRIR--QESPRTKILMLSMYTNEEYLKEALRAGAAGY 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D   + + +  ++     +         +         +  +   G    LTGR+
Sbjct: 104 LLKDADRNELELAIKAVWRSETYLTP------SMTKFAVDAYCQQGEAQTGPLARLTGRQ 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I+EG ++ +IA  L +S  TV  + A +M +       G +  A+R  +V
Sbjct: 158 REILQLIAEGCSTKQIAQRLDLSVKTVETHRAQLMERLDIHDVPGLVRLAIRTGLV 213


>gi|312198687|ref|YP_004018748.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311230023|gb|ADP82878.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 1019

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 162  IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              L+A       ++ D+       L+ RE +    +++G T+ +IA  L IS  T  N++
Sbjct: 935  AALVAELGDGAERASDLRARV---LSPREEQVARLVADGLTNRQIAARLVISERTAQNHV 991

Query: 222  ASIMRKTATKTRSGAIAYAVR 242
              I+ K     RS    + VR
Sbjct: 992  QHILTKLGFSARSQIATWVVR 1012


>gi|302545604|ref|ZP_07297946.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463222|gb|EFL26315.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 231

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 62/178 (34%), Gaps = 11/178 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------VFHTLPENITPPAGMDN 128
             V  + P  ++  + + + D    VL+    +  P        F      +T       
Sbjct: 48  ETVRRERPDVVLLDIRMPDVDG-LTVLRELRTMPDPPVVAMLTTFDADEYILTALHSGAA 106

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     +  ++   +  L   G ++          L           D    +   LT 
Sbjct: 107 GFLLKDTEPEQLAHLVRTLAAGGVVLSPKASRT---LLHSHPGTEAVVDEKAARVRLLTA 163

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  ++EG ++ +I   + +   TV +++++++ K    +R  A   A R  ++
Sbjct: 164 RERDVLVLVAEGLSNADIGARIHLGVGTVKDHVSAMLTKLRVTSRVQAALLAQRAGLL 221


>gi|291301049|ref|YP_003512327.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570269|gb|ADD43234.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 914

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ RE E L  + E  T+ +IA  L IS  TV N+++S++RK     R    A A
Sbjct: 8   PISKREAEVLAVLGEHLTNAQIAHRLHISVRTVENHVSSLLRKLGAANRQALAAIA 63


>gi|16763929|ref|NP_459544.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56414302|ref|YP_151377.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161615245|ref|YP_001589210.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167550921|ref|ZP_02344677.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167990544|ref|ZP_02571644.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168818830|ref|ZP_02830830.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|197251803|ref|YP_002145532.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263357|ref|ZP_03163431.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197363222|ref|YP_002142859.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198246048|ref|YP_002214503.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200391104|ref|ZP_03217715.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205351850|ref|YP_002225651.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856027|ref|YP_002242678.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|120173|sp|P26319|FIMZ_SALTY RecName: Full=Fimbriae Z protein
 gi|153968|gb|AAA27065.1| fimbriae Z [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|349137|gb|AAA75422.1| FimZ [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16419060|gb|AAL19503.1| fimbrial protein Z [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56128559|gb|AAV78065.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161364609|gb|ABX68377.1| hypothetical protein SPAB_03014 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197094699|emb|CAR60229.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197215506|gb|ACH52903.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197241612|gb|EDY24232.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197940564|gb|ACH77897.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199603549|gb|EDZ02095.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205271631|emb|CAR36457.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205324155|gb|EDZ11994.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330873|gb|EDZ17637.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205344205|gb|EDZ30969.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206707830|emb|CAR32115.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261245828|emb|CBG23626.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267992273|gb|ACY87158.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157157|emb|CBW16641.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911582|dbj|BAJ35556.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084822|emb|CBY94612.1| Transcriptional regulatory protein degU Protease production
           enhancer protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321226131|gb|EFX51182.1| Transcriptional regulator of fimbriae expression FimZ LuxR/UhpA
           family [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|332987498|gb|AEF06481.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 210

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    +     ++    AG       N + S  
Sbjct: 48  YPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKR 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+  I   + ++         + L        + +N       H   D  L+ REV  L
Sbjct: 108 KDLNDIYNAVKMILSGYSFFPSETL-------NFISNTRTPKGGHH--DMPLSNREVTVL 158

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + ++
Sbjct: 159 RYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL 210


>gi|291436295|ref|ZP_06575685.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291339190|gb|EFE66146.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 224

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 3/176 (1%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++    +V  D     V  +A +E  +       P  +    FH   + +         +
Sbjct: 46  DRTRPDVVLMDIRMPTVDGLAATETLR--RRADAPQVVVLTTFHADEQVLRALRAGAAGF 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  A I   +  +     ++      ++   AA  A   +       +   L  RE
Sbjct: 104 VLKDTPPAEILAAVRRVAAGDPVLSPAVTRQLMAHAAGTAADTRRAHARQ-RIAALNDRE 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E    +  G  + EIA  L +S  TV  +++  + K     R      A    ++
Sbjct: 163 REVAVAVGRGLANAEIAARLFMSVATVKTHVSRTLAKLGLNNRVQIALLAHDAGLL 218


>gi|291298065|ref|YP_003509343.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567285|gb|ADD40250.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 204

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 169 QANMFKSYDVHWG----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             ++    DV  G        LT RE E L+    G T  EIA  L +S  TV NY+A+ 
Sbjct: 123 CGHLVMDSDVALGLLRANHSPLTAREREVLSITHGGATPKEIASKLQLSVGTVRNYLANA 182

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K   + R  AI  A     +
Sbjct: 183 CAKLGARNRIEAIRVAQSAGWI 204


>gi|284988779|ref|YP_003407333.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284062024|gb|ADB72962.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 230

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 2/135 (1%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L  P   + PE +         +        R+  G+  L      +         L+  
Sbjct: 85  LAEPETESEPELVEILQAGVRGFLPRRSGAQRLVDGVRALARHEAALDPAATSH--LVHH 142

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             +   +   +       LT R+ E    +++G +++EIA  L +S  TV +++ + MR+
Sbjct: 143 LTSGPQRRSALEPRALDRLTYRQREVAELVAQGLSNEEIAGRLFLSLATVKSHLTASMRR 202

Query: 228 TATKTRSGAIAYAVR 242
              ++R+       R
Sbjct: 203 LGVRSRTELAILVTR 217


>gi|260772003|ref|ZP_05880920.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP
           69.14]
 gi|260612870|gb|EEX38072.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP
           69.14]
          Length = 209

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 34/69 (49%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A+M    +    K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK  
Sbjct: 134 ADMPNQGNDLAEKIATLTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLN 193

Query: 230 TKTRSGAIA 238
              R+ A+ 
Sbjct: 194 VTNRTQAVI 202


>gi|261341125|ref|ZP_05968983.1| positive transcription regulator EvgA [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316417|gb|EFC55355.1| positive transcription regulator EvgA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 210

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 17/163 (10%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F L++ +    KD     L   +E F                  N + S   D+  I   
Sbjct: 65  FALLKRIRNLNKDIKVLFLSSKSEAF--------YAGRAIRAGANGFVSKRKDLGEIYNA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++         + L  I  L +               D  L+ REV  L +++ G ++
Sbjct: 117 VEMILNGYSFFPSETLSFINHLGSRTGAAV---------DMPLSNREVTVLRYLANGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  T++ + ++I  K   ++    I YA  + ++
Sbjct: 168 KEIAEQLLLSNKTISAHKSNIYSKLGVQSIVELIDYAKAHELL 210


>gi|213692504|ref|YP_002323090.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523965|gb|ACJ52712.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458651|dbj|BAJ69272.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 217

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           I    G+  +   +  DVA +   L  +     ++  + L ++       A+   S D  
Sbjct: 92  IAQAMGLGAKGYLIKQDVAAVGPALQAVMAGQVVLGAEVLGKLTERTPDPADSDDSGDTA 151

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  L  RE E    ++EG  + +IA  L +S  TV N I++I+ K     R+    
Sbjct: 152 DSIEGLLGEREREITALVAEGLDNRDIAARLFLSEGTVRNRISAILDKLGLTNRTQLAI 210


>gi|157151124|ref|YP_001451003.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075918|gb|ABV10601.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 199

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 37/81 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   ++G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAADGLSNKEIAEKLFLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLDAENRTEAVRIGQEKG 197


>gi|29899136|gb|AAP03103.1| putative 2-component system response regulator [Streptomyces
           griseochromogenes]
          Length = 222

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + +  I+ G+T+ E+A  L IS +TV +++A+I  K   + R    A+A  + 
Sbjct: 154 QLSERETQVIRAIARGRTNQEVAAELFISLSTVKSHLATIQNKLQVRNRVEIAAWAWESR 213

Query: 245 I 245
           +
Sbjct: 214 L 214


>gi|325982862|ref|YP_004295264.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
 gi|325532381|gb|ADZ27102.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
          Length = 205

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----- 183
            +  +   V  I+ G +      + ++R++L  + + AA+     +  D+   K+     
Sbjct: 85  GHGDIPMSVRAIKGGAVDFLT--KPVIREKLL-VCVRAAFAEAKKRISDIARNKEMMSCL 141

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +LTGRE E +T   +G T+ EIA  LGIS  TV  + + IM+KT    
Sbjct: 142 IKLTGREREVMTLAVQGHTNKEIASCLGISHRTVEIHKSKIMQKTGASN 190


>gi|190572437|ref|YP_001970282.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010359|emb|CAQ43967.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 200

 Score = 76.2 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 31/66 (46%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            W +   LT RE   L    EG+T+ EIA  LG+S  TV NY++  + K     R  A  
Sbjct: 133 AWSQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYR 192

Query: 239 YAVRNN 244
            A +  
Sbjct: 193 MARQKG 198


>gi|254524756|ref|ZP_05136811.1| two-component system response regulator, LuxR family
           [Stenotrophomonas sp. SKA14]
 gi|219722347|gb|EED40872.1| two-component system response regulator, LuxR family
           [Stenotrophomonas sp. SKA14]
          Length = 200

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 31/66 (46%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            W +   LT RE   L    EG+T+ EIA  LG+S  TV NY++  + K     R  A  
Sbjct: 133 AWSQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYR 192

Query: 239 YAVRNN 244
            A +  
Sbjct: 193 LARQKG 198


>gi|197295227|ref|YP_002153768.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|195944706|emb|CAR57310.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 491

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +  L   +A + +            L+ RE++ L  IS G ++ ++A  L +S +TV  +
Sbjct: 406 VAALVTGEAPVPRRIAPRASDAGPRLSAREIDVLRAISRGASNKQVAQALAMSPSTVRTH 465

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +    RK    TR+ A   A    ++
Sbjct: 466 VEKAFRKLECSTRAAATLKASALGLL 491


>gi|186471314|ref|YP_001862632.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197623|gb|ACC75586.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 210

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 41/77 (53%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A +F+++         L+ RE + L  ++ GK+ +EIA I  +S  T++ +   +M+K  
Sbjct: 132 AMVFETHRGDMPPHEVLSDREFQVLQMLAAGKSINEIADICALSAKTISTHKMRLMQKLG 191

Query: 230 TKTRSGAIAYAVRNNIV 246
               +  I YA+R+ ++
Sbjct: 192 LANNAEVIRYAIRHGLI 208


>gi|81428161|ref|YP_395161.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609803|emb|CAI54849.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 201

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE + L  ++ G ++ E+A  L +S  TV NY+++I+ K A   R  AI  A 
Sbjct: 137 PQNPLSQRETDVLQAVANGLSNKEVASQLFLSDGTVRNYMSTILSKLAASNRIEAIQIAR 196

Query: 242 RNN 244
            N 
Sbjct: 197 HNG 199


>gi|229496646|ref|ZP_04390360.1| transcriptional regulator, LuxR family domain protein
           [Porphyromonas endodontalis ATCC 35406]
 gi|229316543|gb|EEN82462.1| transcriptional regulator, LuxR family domain protein
           [Porphyromonas endodontalis ATCC 35406]
          Length = 199

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 42/78 (53%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             +  ++ ++    +  L+ RE + + ++++G T+ EI+  L IS +TV  +  +I +K 
Sbjct: 115 VVSQAENEEMDLDNERLLSPREKDVVAYVAKGLTNKEISAKLSISIHTVITHRRNIAKKL 174

Query: 229 ATKTRSGAIAYAVRNNIV 246
              + SG   YA+ N +V
Sbjct: 175 KIHSPSGLTIYAIVNKLV 192


>gi|332520099|ref|ZP_08396563.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
 gi|332044658|gb|EGI80852.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
          Length = 227

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           ++     N+    D     +F+    T RE+E L  I +  T+++IA  L IS  TV  +
Sbjct: 134 VIQFIHENLTNPNDKKVKSNFDTSYFTKREIEVLELICQQSTTNDIAEKLFISPRTVEGH 193

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
             +++ KT +K  +G + Y ++N +V
Sbjct: 194 RNNLLLKTESKNVAGLVIYGLKNKLV 219


>gi|299069217|emb|CBJ40477.1| transcription regulator for hrp genes expression [Ralstonia
           solanacearum CMR15]
          Length = 166

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G +   + +  +       +   LT R+ + L   + GK++ EIA  L IS  TV +++
Sbjct: 75  LGRILDARRHGPEPRPDGGARLSALTPRQHDILREAAHGKSNVEIAQTLHISVETVKSHV 134

Query: 222 ASIMRKTATKTRSGAIA 238
             I+ +   + R+   A
Sbjct: 135 RQILMRLDARNRTELAA 151


>gi|291517024|emb|CBK70640.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bifidobacterium longum subsp.
           longum F8]
          Length = 217

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           I    G+  +   +  DVA +   L  +     ++  + L ++       A+   S D  
Sbjct: 92  IAQALGLGAKGYLIKQDVAAVGPALQAVMAGQVVLGAEVLGKLTERTPDPADSDDSRDTA 151

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  L  RE E    ++EG  + +IA  L +S  TV N I++I+ K     R+    
Sbjct: 152 DSIEGLLGEREREITALVAEGLDNRDIAARLFLSEGTVRNRISAILDKLGLTNRTQLAI 210


>gi|254441976|ref|ZP_05055460.1| transcriptional regulator, LuxR family protein [Octadecabacter
           antarcticus 307]
 gi|198250584|gb|EDY74908.1| transcriptional regulator, LuxR family protein [Octadecabacter
           antarcticus 307]
          Length = 146

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  ++EGK++ EIA  L I   TV  ++ ++ RK     R+ A       N
Sbjct: 85  KLTERELQMLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALIGREAN 144

Query: 245 I 245
           +
Sbjct: 145 L 145


>gi|37223205|gb|AAQ90198.1| LuxR [Aliivibrio fischeri]
          Length = 222

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 51  ALTEYVGASH---FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
            L+E     H   +L          K D  +  ++P    +    +   +Y  V+     
Sbjct: 28  CLSEIAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGLLEYDPVVDYSKS 87

Query: 108 LFCP----VFHTLPENITPPAGMDNR-------YCSLTFDVARIRIGLMLLFPKGRIILR 156
              P    VF         P  +            S     A    G++      + I  
Sbjct: 88  HHSPINWNVFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGMLSFAHSDKDIYT 147

Query: 157 DRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           D L+         +L +   N  K        D  LT RE ECL W SEGK++ +I+ IL
Sbjct: 148 DSLFLHASTNVPLMLPSLVDNYQKINLTRKKSDSILTKREKECLAWASEGKSTWDISKIL 207

Query: 211 GISRNTVNN 219
           G S  TV  
Sbjct: 208 GCSERTVTF 216


>gi|313106105|ref|ZP_07792362.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310878864|gb|EFQ37458.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 243

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 22/233 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKLDSIVSSDWPFDLVR 88
           D +AR+     T +    M      +G    ++        +++ +D +       D   
Sbjct: 10  DSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVH--GDWAE 67

Query: 89  CMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             +  E+D Y     V +   EL  P F +   +  P   M  R      D+ ++    +
Sbjct: 68  GRSAQERDAYLLHCPVTRHILELDEPFFWSKSPSEDPER-MTYRIVRGVRDLGQVNGMQV 126

Query: 146 LLFPKGRI-----ILRDRLWEIG----LLAAYQANMFKSY-----DVHWGKDFELTGREV 191
            +F +  +        +RL           A+   +F +       V  G    L+ RE 
Sbjct: 127 PVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERER 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 187 EVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|302559828|ref|ZP_07312170.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477446|gb|EFL40539.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 200

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            + +   RL EI                 D     D  LT RE E L   ++G    EIA
Sbjct: 102 PKTVSAQRLAEIIRTVHAGNRYVDPELAADAIAAGDSPLTAREAEVLELAADGAPVAEIA 161

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
               +S+ TV NY++S + K   + R  A+  A    
Sbjct: 162 ERAALSQGTVRNYLSSAVTKLGAENRHAAVRLARERG 198


>gi|300788042|ref|YP_003768333.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797556|gb|ADJ47931.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 13/162 (8%)

Query: 87  VRCMALSEKDK-------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +  + +   D            ++ P  +       L E +        R   L     +
Sbjct: 53  LFDIRMPGMDGIEATRRLAGPGVENPLAVVVITTFDLDEYVYAALRAGARGFLLKNAGTQ 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWIS 198
                +L          D L    + A        +      +  E LT RE + L  ++
Sbjct: 113 -----LLAQAVHAAATGDALIAPSVTARLLDAFAGTGSGAPSQPIEPLTDREEQVLLSVA 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            G+T+ EI   L I+ +TV  +IAS+M K   + R     +A
Sbjct: 168 RGRTNREITEELYITLSTVKTHIASLMAKLGARNRVEIAIWA 209


>gi|229821170|ref|YP_002882696.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567083|gb|ACQ80934.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 223

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 1/165 (0%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +A +           P  L    F      +         Y     
Sbjct: 49  DVVLMDIRMPVLDGIAATRAL-VDRPGATPAVLVLTTFGADRTVVDALRAGAAGYVLKDT 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A I   +  +     ++       +  +A    +  ++          LT RE +   
Sbjct: 108 PPAEIVEAVRRVAAGEAVLSPAVTRSLIDVATAADSEPEAGAAARRSLAALTERERDVAD 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +++G ++ EIA  L +S ++V  +++S + K     R      A
Sbjct: 168 AVADGLSNGEIAARLYLSTSSVKTHLSSALTKLGLVNRVQLAILA 212


>gi|254502437|ref|ZP_05114588.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222438508|gb|EEE45187.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 203

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 172 MFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           M +      G  FE    LT RE+E L  I++G ++ E    LGIS  TV  + A IM K
Sbjct: 124 MKQRQSSDDGMQFEGVDLLTRRELEVLKEITDGASNKEAGRTLGISPRTVEVHRARIMEK 183

Query: 228 TATKTRSGAIAYAVRNN 244
              +  +  +   + + 
Sbjct: 184 LGARNAAELVRIVLGHG 200


>gi|171911633|ref|ZP_02927103.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 222

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 1/108 (0%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195
           V +   G   L     ++   R     L A+   +  +S         E L+ RE E   
Sbjct: 110 VMKDADGPTFLTAVRTVLAGQRYMSSRLAASVLESFGQSKPRGSSSPIEKLSDREFEVFR 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              EGKT+ EIA  L +S  TV+ +   I  K    T +  I  AVR+
Sbjct: 170 LFGEGKTAKEIAAQLNLSPKTVSVHRDHIKEKLGFSTSAEMIRQAVRH 217


>gi|78485726|ref|YP_391651.1| two component LuxR family transcriptional regulator [Thiomicrospira
           crunogena XCL-2]
 gi|78364012|gb|ABB41977.1| two component transcriptional regulator, LuxR family
           [Thiomicrospira crunogena XCL-2]
          Length = 232

 Score = 75.8 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 7/180 (3%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+K   I+  D     +  +A+  + K     + P ++        P        +    
Sbjct: 48  EEKQPDILIIDLSMPKLSGLAVITQLKK---QKNPIKIIVLTAAEAPNVWKEVLDLGVEG 104

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDV--HWGKDFEL 186
            +L        +  +         +   +       LA  +       D      +  +L
Sbjct: 105 LALKSVSKAELVSGIKSVIADENFIHSEIQPALDAYLAELEGQKTPEEDSGDKPSRPKKL 164

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + +  ++EG  + +IA +L IS  TV+ +  +IM K      +  + YA    ++
Sbjct: 165 SVREKQVIKLVAEGYKTKDIADMLEISDRTVSKHRENIMTKLGMTASAELVNYASHIGLL 224


>gi|332304648|ref|YP_004432499.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332171977|gb|AEE21231.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 212

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT ++ + L  I +G  + +IA  L ++  TV  +I+++ RK    TR+ A+    + N
Sbjct: 150 ELTPKQFQVLKLIHDGLLNKQIAHELNVTEATVKAHISAVFRKLEVNTRTQAVLLLKKLN 209

Query: 245 I 245
           +
Sbjct: 210 L 210


>gi|321157306|emb|CBW39288.1| Response regulator [Streptococcus pneumoniae]
          Length = 198

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + +  D L +  L   Y      S +V       LT RE+E L  +  G T D++   +
Sbjct: 104 DKSVDPDELVK-KLEKIYLGGKVFSDEVMVEV---LTPREIEILELVRNGLTIDDVCDKV 159

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +S+ TV+N++A+I  K     R  AI  A +  
Sbjct: 160 YVSKRTVSNHLANIFSKLGVTNRQEAIHIAEQLG 193


>gi|281424279|ref|ZP_06255192.1| transcriptional regulator, LuxR family protein [Prevotella oris
           F0302]
 gi|281401548|gb|EFB32379.1| transcriptional regulator, LuxR family protein [Prevotella oris
           F0302]
          Length = 214

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I++G  + EI   L I   TV ++  +I+ K   K+ S    YAV +  
Sbjct: 149 LSDREIEVLSLIAQGYINKEIGNQLNIGLTTVISHRKNIVEKLGMKSVSALTIYAVMHGY 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|290962713|ref|YP_003493895.1| regulator [Streptomyces scabiei 87.22]
 gi|260652239|emb|CBG75372.1| putative regulator [Streptomyces scabiei 87.22]
          Length = 99

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +    D  L+ RE+E L   + G +  +++  L IS  TV  ++ SI  K   K R+  +
Sbjct: 1   MAMDSDGRLSARELEILLLAAHGMSDADMSRRLSISPRTVAAHMRSIREKLCAKNRTHLV 60

Query: 238 AYAVRNNIV 246
             A+   I+
Sbjct: 61  VTALCAGIL 69


>gi|118578818|ref|YP_900068.1| two component LuxR family transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118501528|gb|ABK98010.1| two component transcriptional regulator, LuxR family [Pelobacter
           propionicus DSM 2379]
          Length = 240

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 1/162 (0%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D+V  + L+ ++    V +R       +   L  +        +   +        R   
Sbjct: 78  DIVLMVVLNRREASIGVTKRLKAQHPDIGVILVTSCEDTTFARDIIRAGASGYLPTRAAQ 137

Query: 145 MLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
             L      I R  L+    +                     LT RE E L +I++G T+
Sbjct: 138 SELINAIHAIRRGDLYIHPSMTRCLLYGQTSPAVARVPPRKPLTRREAEILGYIAQGHTN 197

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA +L +S  TV ++ A +  K     R   + +A   +I
Sbjct: 198 RQIAELLFVSVRTVESHRARLQGKLNAHCRMDLVRHAANLDI 239


>gi|325961975|ref|YP_004239881.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468062|gb|ADX71747.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 208

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 17/198 (8%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +D  +     + AL   +G    L V  +    ++   +V    P  +V  +A+      
Sbjct: 9   VDDHLVVRSGLRAL---LGTQPDLQVTAEAASGEEALRLVQEHGPAVVVMDLAMGPGMDG 65

Query: 99  YNVLQRPTEL----FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
              +++  E        VF T   +      +D              +       +    
Sbjct: 66  IEAIRKIRERNPRQAILVFTTYDSDADIVRAVDAGA--------MGYLLKDAAPEEIFAA 117

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           +R  +    +++   A+    +      +  LT RE E L+ +++G ++ E+   L IS 
Sbjct: 118 IRGAVQGKSVMSPPVASRL--FQQLRNPEEVLTPREAELLSLLTQGLSNRELGQRLFISE 175

Query: 215 NTVNNYIASIMRKTATKT 232
            TV  ++A I  K    T
Sbjct: 176 ATVKTHLAHIYAKLGVDT 193


>gi|289165158|ref|YP_003455296.1| transcriptional regulator [Legionella longbeachae NSW150]
 gi|288858331|emb|CBJ12199.1| putative transcriptional regulator [Legionella longbeachae NSW150]
          Length = 282

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL  RE ECL W   GK++ E + ILG+ R TV NY+  +  K    +   AI  A+++ 
Sbjct: 220 ELKDRERECLFWARYGKSTSETSEILGLKRATVKNYLEGVREKFHVSSVQEAITLALQHQ 279

Query: 245 IV 246
           I+
Sbjct: 280 II 281


>gi|261880311|ref|ZP_06006738.1| transcriptional regulator [Prevotella bergensis DSM 17361]
 gi|270333001|gb|EFA43787.1| transcriptional regulator [Prevotella bergensis DSM 17361]
          Length = 318

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +   G    L+GRE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G 
Sbjct: 242 NNSPGSQENLSGREKDVIIALVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGL 301

Query: 237 IAYAVRNNIV 246
             YA+ NN+V
Sbjct: 302 TIYAIVNNLV 311


>gi|302535729|ref|ZP_07288071.1| luxR family two component system response regulator [Streptomyces
           sp. C]
 gi|302444624|gb|EFL16440.1| luxR family two component system response regulator [Streptomyces
           sp. C]
          Length = 203

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 22/200 (11%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE--- 107
           AL   +G    L+V  +     +  ++  +  P   V  + +   D          E   
Sbjct: 18  ALAALLGLEDDLVVVAEAASGPEALAMARAHRPDVAVLDLQMPGADGVSVATSLRAELPD 77

Query: 108 --LFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
                   H  P ++        R  +  T    R+   +  +   GR +  +       
Sbjct: 78  CKTMIVTSHGRPGHLKRALAAGVRAFAPKTVSAQRLAELIRTVHAGGRYVDPE------- 130

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LAA         D     D  LT RE E L   ++G    EIA    +S+ TV NY++S 
Sbjct: 131 LAA---------DAISAGDSPLTAREAEVLELAADGAPIAEIAERASLSQGTVRNYLSSA 181

Query: 225 MRKTATKTRSGAIAYAVRNN 244
             K   + R  A+  A +  
Sbjct: 182 ATKLGAENRHTAVRLARQRG 201


>gi|145299701|ref|YP_001142542.1| two-component system nitrate/nitrite response regulator NarP
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852473|gb|ABO90794.1| two-component system nitrate/nitrite response regulator NarP
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 212

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           + +       + Y     +   +   L  +    +I+          L  Y  N+++  D
Sbjct: 93  DVVALLKAGADGYLLKDTEPEMLLAQLADVMTGKQILSEP-------LRPYLENIYE-LD 144

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               K   LT RE++ L  I++G ++ ++A +L IS  TV  ++ S+++K   ++R  A 
Sbjct: 145 HLQQKLESLTSREMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLLKKLEAQSRVEAA 204

Query: 238 AYAVRNN 244
              +   
Sbjct: 205 VMYLEQR 211


>gi|114706302|ref|ZP_01439204.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506]
 gi|114538163|gb|EAU41285.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506]
          Length = 205

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE E L+ ++ G T+ +IA   GIS+NTV  Y+ ++  K   + R+ A+A
Sbjct: 145 KLTVRERELLSMLALGWTNVQIAARTGISQNTVKYYLKNLYEKLDVQNRAMAVA 198


>gi|51244367|ref|YP_064251.1| two-component system response regulator [Desulfotalea psychrophila
           LSv54]
 gi|50875404|emb|CAG35244.1| related to two-component system response regulator [Desulfotalea
           psychrophila LSv54]
          Length = 197

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +L+ RE E  + ++EG ++ EIA  + +S  TV  +++SI  KT  + R
Sbjct: 139 KLSKREQEVASCVAEGMSNQEIADKMYVSLRTVKAHLSSIYEKTGLRNR 187


>gi|326389101|ref|ZP_08210683.1| LuxR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206701|gb|EGD57536.1| LuxR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 196

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 38/85 (44%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           ++ L         K  +    K   L  R+ E L  I+ GK + +IA  L IS  TV  +
Sbjct: 112 QVELSGGLHDQNRKRSESAREKVEALPKRQREILECIAAGKLNKQIAWELQISERTVKLH 171

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
            A++++    KT + AI  A+   +
Sbjct: 172 RAAVLKALGVKTSADAIRMAIEAGL 196


>gi|325527607|gb|EGD04913.1| Two component LuxR family transcriptional regulator [Burkholderia
           sp. TJI49]
          Length = 263

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 12/174 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            ++  D     +  +  S   K      R   L   V               + Y     
Sbjct: 56  DLILMDLSMRGMNGIDASATIKRRTPTIRIVVLT--VHQNEEYVREALRAGVDGYVLKDV 113

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDFELTGREVE 192
               + + + ++    R +  +       +  Y  + F   +           LT RE  
Sbjct: 114 SFDELLLAMRMVMQGKRHLSAE-------VCGYMVDSFVTGREAPAPRKAWDVLTARERS 166

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I+EG+T+ ++   L +S  T+  Y AS+M K      +  +  A+   ++
Sbjct: 167 VLKLIAEGRTNRQVGQYLNLSPKTIEKYRASMMHKLHLANLTELVLVAMNMGLL 220


>gi|156975758|ref|YP_001446665.1| hypothetical protein VIBHAR_03493 [Vibrio harveyi ATCC BAA-1116]
 gi|156527352|gb|ABU72438.1| hypothetical protein VIBHAR_03493 [Vibrio harveyi ATCC BAA-1116]
          Length = 213

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 1/99 (1%)

Query: 147 LFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +      I +  LW   + L     N   S      +   LT RE + L  ++ G ++ +
Sbjct: 110 ISESVEYIFQGGLWLPRVYLETLINNYRHSNVSMECQHDSLTSRERQILELLAYGISNQQ 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA  L +S +TV ++I  + +K     R  AI     N 
Sbjct: 170 IASQLFLSESTVKSHIYKLYKKLDVHCRHDAIKIVRMNG 208


>gi|320109005|ref|YP_004184595.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319927526|gb|ADV84601.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 203

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 62/176 (35%), Gaps = 24/176 (13%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNR--- 129
            ++  + P  LV  + + E         V +   +    +  T          M++    
Sbjct: 43  RMMLKEPPDVLVTDIEMPEMTGLELAAAVREAGLKTRVVMLTTFARAGYLRRAMESGVLG 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTG 188
           Y       A +   +  +    R+I  D       LAA            WG + + LT 
Sbjct: 103 YLLKDRPAAELADAVRRVHRGLRVIDPD-------LAA----------EAWGSEVDPLTE 145

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE + L    EG+T+ E+A  LG+S  TV NY++  M K     R  A   A    
Sbjct: 146 RERQILLRAGEGRTTAEVARELGLSEGTVRNYLSEAMSKLGAVNRIDAARMARAKG 201


>gi|300782911|ref|YP_003763202.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792425|gb|ADJ42800.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 207

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ RE E L  ++ G ++ EIA  L  S+ TV + +  +  +   + RS A+AYA+R  +
Sbjct: 147 MSDRETEVLKLVAAGHSTQEIADELCYSQRTVKSILHDVTNRFQLRNRSHAVAYALREGL 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|291300164|ref|YP_003511442.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569384|gb|ADD42349.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  +++G ++ +IA  L +   TV +++++I+ K     R  A   A R  +
Sbjct: 153 LTDRERAVLVHLADGLSNADIAARLYLGVGTVKDHVSAILAKLEVANRVQAALLAERAGL 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|255320308|ref|ZP_05361493.1| two component transcriptional regulator, LuxR family [Acinetobacter
           radioresistens SK82]
 gi|262380505|ref|ZP_06073659.1| response regulator [Acinetobacter radioresistens SH164]
 gi|255302747|gb|EET81979.1| two component transcriptional regulator, LuxR family [Acinetobacter
           radioresistens SK82]
 gi|262297951|gb|EEY85866.1| response regulator [Acinetobacter radioresistens SH164]
          Length = 216

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y   +   + I   +  +      +  +      L      +   + +    +  + 
Sbjct: 98  AMGYIPKSAHPSHIGEAIRQVLEGEIWLPPN------LPTNVSFDPRATDETELAERIQS 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+  A++
Sbjct: 152 LTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV-LAIK 207


>gi|206890511|ref|YP_002248221.1| response regulator UvrY [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742449|gb|ACI21506.1| response regulator UvrY [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 213

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +L+ RE +    I++GK+  EI+  L IS  TV+ Y A I+ K   +  +  I YA+
Sbjct: 148 PHEKLSEREFQVFLMIAKGKSLIEISKELSISIKTVSTYRARILEKLGLENNAEIINYAI 207

Query: 242 RNNIV 246
           ++ ++
Sbjct: 208 KHGLI 212


>gi|152999376|ref|YP_001365057.1| response regulator receiver protein [Shewanella baltica OS185]
 gi|151363994|gb|ABS06994.1| response regulator receiver protein [Shewanella baltica OS185]
          Length = 221

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|160873996|ref|YP_001553312.1| LuxR family transcriptional regulator [Shewanella baltica OS195]
 gi|160859518|gb|ABX48052.1| transcriptional regulator, LuxR family [Shewanella baltica OS195]
 gi|315266225|gb|ADT93078.1| transcriptional regulator, LuxR family [Shewanella baltica OS678]
          Length = 221

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE   + ++S G  + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|229014836|ref|ZP_04171934.1| Response regulator [Bacillus mycoides DSM 2048]
 gi|228746456|gb|EEL96361.1| Response regulator [Bacillus mycoides DSM 2048]
          Length = 290

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 64/164 (39%), Gaps = 4/164 (2%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           +    +S  +    + QR  ++      T  +++     ++     Y   +     ++  
Sbjct: 127 ISMQGMSGIETLLEMKQRWPDMKVVFMTTFEDSLQAATALEHGAEGYMLKSIHPREMKEA 186

Query: 144 LMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           L L++  G  I +         + + +  + K         + LT RE+E L  +S G  
Sbjct: 187 LKLIYNGGIWIDQSVATRIFEEMKSQREQLEKIGSSQENFPYGLTKREMEILEHLSGGLR 246

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              IA  L +S  T+ NY +++  K +   R  AI  A + NIV
Sbjct: 247 YKSIAAKLFLSEGTIRNYCSTLYSKLSVNNREEAIKRARKENIV 290


>gi|256376144|ref|YP_003099804.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920447|gb|ACU35958.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 214

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 5/168 (2%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+    +V +D     V  + +    +   +   P  +    F       +   G    +
Sbjct: 45  ERHRPDVVLTDVQMPGVDGLEVVR--RVTALPDAPAVVVLTTFDLDEYVHSALRGGATGF 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   + ++     +I       + L  A + +              LT RE
Sbjct: 103 LLKDTPPRDLVRAVHVVARGEAMISPGVTRRLLLEFAAEPDGRTEARRRLS---GLTPRE 159

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            E    +  G ++  IA  L +S +TV  +I  IM K     R+    
Sbjct: 160 REVAEAVGRGASNAGIARELFLSESTVKVHIGRIMAKLDAANRTQVAI 207


>gi|218886230|ref|YP_002435551.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757184|gb|ACL08083.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 231

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  ++EG  + EIA +L +S  TV  + A++ RK +  +++ A A+A    
Sbjct: 158 LTPREREVLHLVAEGYRNREIAGLLVVSDRTVEKHRANLFRKLSLHSQADARAWAEERG 216


>gi|223939687|ref|ZP_03631560.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891644|gb|EEF58132.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F S         +L+  E E L  +S+G    EIA  +GIS +TV  Y+ ++  K    
Sbjct: 136 QFFSKPQDVSPVSQLSPGEREFLQLLSKGYVYKEIAEKMGISTDTVRYYVRTVYEKLHVH 195

Query: 232 TRSGAIAY 239
           +R+ A+  
Sbjct: 196 SRTEAVVK 203


>gi|313204085|ref|YP_004042742.1| transcriptional regulator, luxr family [Paludibacter
           propionicigenes WB4]
 gi|312443401|gb|ADQ79757.1| transcriptional regulator, LuxR family [Paludibacter
           propionicigenes WB4]
          Length = 220

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK   LT  E+E +   ++GKT+ EIA    +S +T+N +  +I RK         I +A
Sbjct: 148 GKRDLLTHTELELIQLFTQGKTAKEIADSRCLSHHTINTHRKNIFRKLEINNVQELIKFA 207

Query: 241 VRNNIV 246
           ++N +V
Sbjct: 208 LKNGLV 213


>gi|255039276|ref|YP_003089897.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254952032|gb|ACT96732.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 212

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 36/66 (54%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +   LT RE+E + +I +G T+++I+  L +S  TV  +  +I  K      +  I +
Sbjct: 147 FTQKLNLTFREIEIIGFIKKGYTNEQISAALNLSFFTVKTHRKNIHFKLGINNVAELIEF 206

Query: 240 AVRNNI 245
           A++N I
Sbjct: 207 AIQNGI 212


>gi|227489471|ref|ZP_03919787.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227090649|gb|EEI25961.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 280

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V      +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 211 VRIKPTTKLSARELDVLSCVALGHTNVEAAKEMGIGAETVKSYLRSVMRKLGAHTRYEAV 270

Query: 238 AYAVRNN 244
             A R  
Sbjct: 271 NAARRIG 277


>gi|220923689|ref|YP_002498991.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948296|gb|ACL58688.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 223

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-------FELTGREVECL 194
           +GL  L    R I    ++   LLA   A+     D+             ELT R+ + L
Sbjct: 111 LGLAELTKALRAIAEGTIYAPQLLAEISADPDNRSDLPDSGPNPKPKGTAELTRRQRDVL 170

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
             + +GK++ EIA  L +   TV  ++A++ R     TR
Sbjct: 171 ALLVQGKSNKEIARALNLGEGTVKVHMAALFRTLGVSTR 209


>gi|194364036|ref|YP_002026646.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194346840|gb|ACF49963.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 200

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 31/66 (46%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            W +   LT RE   L    EG+T+ EIA  LG+S  TV NY++  + K     R  A  
Sbjct: 133 AWSQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYR 192

Query: 239 YAVRNN 244
            A +  
Sbjct: 193 LARQKG 198


>gi|94311470|ref|YP_584680.1| ATP-dependent transcription regulator LuxR [Cupriavidus
           metallidurans CH34]
 gi|93355322|gb|ABF09411.1| putative ATP-dependent transcriptional regulator, LuxR-family
           [Cupriavidus metallidurans CH34]
          Length = 925

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE E L  I++  ++  +A  L IS  TV  ++ +I  K     R  A+A
Sbjct: 855 LSEREAEVLKLIAQAMSNKMVARTLSISPETVKWHLKNIYIKLGVSGRDEAVA 907


>gi|323705213|ref|ZP_08116789.1| transcriptional regulator, LuxR family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535639|gb|EGB25414.1| transcriptional regulator, LuxR family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 121

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             LT RE+E L +I +G  +++IA IL I +NTV N+I  I +K   K +  
Sbjct: 48  INLTKREMEILFYIFKGYKNNQIANILHIKKNTVKNHIYHIYKKFNAKNKIE 99


>gi|307947515|ref|ZP_07662848.1| two component LuxR family transcriptional regulator [Roseibium sp.
           TrichSKD4]
 gi|307769333|gb|EFO28561.1| two component LuxR family transcriptional regulator [Roseibium sp.
           TrichSKD4]
          Length = 236

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT RE E L ++++G ++ E A  L +S  TV  +  +I RKT   T S  +  A R 
Sbjct: 153 YGLTTRETEILRFVADGMSNKETANRLNLSVRTVETHRLNIRRKTKAYTLSDLVRVARRL 212

Query: 244 NIV 246
            +V
Sbjct: 213 RLV 215


>gi|256390814|ref|YP_003112378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357040|gb|ACU70537.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN------MFKSYD 177
               + +      V+ I  G+ ++     +I         L+A + +             
Sbjct: 96  RAGASGFLVKDMAVSDILAGIRVVAAGDALIAPKVTRR--LIAQFASRPRPATAPPTVPA 153

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   +TGRE E LT++  G ++ EI V +GIS  TV  Y+  ++ K   + R+  +
Sbjct: 154 APPRRIEAITGREREALTFVGRGLSNAEIQVAMGISAATVKTYVTRLLAKLDARDRAQLV 213

Query: 238 AYAVRNNIV 246
             A  N +V
Sbjct: 214 IAAYENGLV 222


>gi|146343765|ref|YP_001208813.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146196571|emb|CAL80598.1| putative Transcriptional regulatory protein, luxR family
           [Bradyrhizobium sp. ORS278]
          Length = 199

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----G 181
           + R+  +  D A ++   +          + RL  +   +A  A   ++  VH      G
Sbjct: 78  ERRHVQMVVDNALLQTERVCALVGRMAGAQARLGPVS--SAVTAREQEAAPVHALVRSGG 135

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE E L  ISEG ++ E A+ +GIS  T  ++ A  MRK   +  +  +  A+
Sbjct: 136 SSKSLTPREREVLKLISEGHSNKEGALRMGISPRTFESHRAEAMRKLGARNTAELVRAAL 195


>gi|27382418|ref|NP_773947.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355589|dbj|BAC52572.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 225

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 14/169 (8%)

Query: 83  PFDLVRCMALSEKDKYY---NVLQRPTELFCPVF--HTLPENITPPAGMDNRYCSLTFDV 137
           P   +   ++           +   P +    +F  H              R      D 
Sbjct: 64  PHVAIVDFSMPRMTGVEVARRIRDYPLQTEVLIFTVHKSGLLAQQAFEAGARAFLTKSDA 123

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R  +  +      +    +           + +     +   G+   LT RE   +  +
Sbjct: 124 NRSLLAAVDALLVHKRFCSES-------CRNELDHGAGGEADRGR--GLTPREQLVVKLV 174

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG ++  I+ IL +S  T   + A+ MRK    + +G + YAVR  +V
Sbjct: 175 AEGYSNKGISAILNLSVKTTEAHRAAAMRKLDVNSTAGLVRYAVRAQLV 223


>gi|83745669|ref|ZP_00942727.1| Hypothetical Protein RRSL_04734 [Ralstonia solanacearum UW551]
 gi|83727746|gb|EAP74866.1| Hypothetical Protein RRSL_04734 [Ralstonia solanacearum UW551]
          Length = 181

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+ + L   + GK++ EIA  L IS  TV  ++  I+ +   + R+  +A 
Sbjct: 116 LTPRQQDILREAASGKSNVEIARALQISVETVKTHMQQILMRLEARNRTELVAM 169


>gi|296268352|ref|YP_003650984.1| LuxR family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296091139|gb|ADG87091.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM
           43833]
          Length = 973

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           LT RE E L  ++ G+T+ EIA  L IS  TV+ ++++I+ K  
Sbjct: 912 LTPREREVLRLVAAGRTNREIAAELFISAKTVSVHVSNILAKLG 955


>gi|315505327|ref|YP_004084214.1| transcriptional regulator, luxr family [Micromonospora sp. L5]
 gi|315411946|gb|ADU10063.1| transcriptional regulator, LuxR family [Micromonospora sp. L5]
          Length = 207

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG  ++EIA  L  S  TV N I  +  +   + RS A+AYA+R+ +
Sbjct: 147 LTAREIDVLRLMAEGFDTNEIADELRYSERTVKNVIYGLNHRLKLRNRSHAVAYALRSGM 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|291301198|ref|YP_003512476.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570418|gb|ADD43383.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 826

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 34/57 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE + LT ++ G+ +  IAV LGI+R TV  +I + MRK   KTR+ A   A  
Sbjct: 763 LTSREQQVLTMVAAGEPTRRIAVALGITRETVETHIRAGMRKLGAKTRTEAAVRAAE 819


>gi|256422119|ref|YP_003122772.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256037027|gb|ACU60571.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 222

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
            +   V+    +         + Y       + +   +  L   G  +       +    
Sbjct: 93  FMMLTVYEDDDKIFQALEAGASGYILKKTPPSELLSAIRDLHEGGSPMSSQIARRVVAYF 152

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             QA    + +        LT RE E L  +S+G    EIA  L IS  TV  ++ +I  
Sbjct: 153 QKQAKPNPALEA-------LTSREKEILDQLSKGFLYKEIASNLFISIETVRRHVHNIYE 205

Query: 227 KTATKTRSGAI 237
           K   ++R+ A+
Sbjct: 206 KLHVRSRTDAV 216


>gi|284033687|ref|YP_003383618.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283812980|gb|ADB34819.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 840

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 12/133 (9%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL--LAAYQANMF 173
           LP+    P    +R+ +L               P+ ++   + L  +G    A   A   
Sbjct: 699 LPDFAAAPYRDGDRWRALGCPYEAALFLAQDEDPQRQVAGLEELQLLGAWGAAHRVARQL 758

Query: 174 KSYDVHW----------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +   V                 LT RE E L  +++   + EIA  L IS  TV++++++
Sbjct: 759 RREGVARVPRGPRPATRSNPAGLTDRETEVLALVAQHLRNAEIAARLHISAKTVDHHVSA 818

Query: 224 IMRKTATKTRSGA 236
           ++ K    TR  A
Sbjct: 819 VLGKLGVSTRQEA 831


>gi|83593935|ref|YP_427687.1| two component LuxR family transcriptional regulator [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576849|gb|ABC23400.1| two component transcriptional regulator, LuxR family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 226

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT R+ E L  +S+G ++ EI   LG++ +TV  ++  I++      R+ A+  A
Sbjct: 165 DLTRRQREVLALMSQGLSNLEIGNRLGLNLSTVKTHVTGILKALDAGNRTQAVLMA 220


>gi|148265357|ref|YP_001232063.1| putative GAF sensor protein [Geobacter uraniireducens Rf4]
 gi|146398857|gb|ABQ27490.1| putative GAF sensor protein [Geobacter uraniireducens Rf4]
          Length = 337

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 153 IILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + R+R   + LL  Y  +  +    D      F+L+ RE E    + +G ++ EIA +L
Sbjct: 243 PLGRNRRGRLILLERYPAEHRLHPKLDA-----FKLSRREKEIAVLVIQGYSNREIADLL 297

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAY--AVRNNIV 246
            IS  TV +++  +  K   + R    A    +R+ I+
Sbjct: 298 FISEQTVKDHLHVMFEKAGIRRRGELAAKVLGLRSGII 335


>gi|109900326|ref|YP_663581.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109702607|gb|ABG42527.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 212

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 47/101 (46%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +++    + I+   +W    L A  A +         +  ELT ++ + L  I +G  + 
Sbjct: 110 LMIADALKTIMSGEIWLTEELKAQIAQIDGEELNLAQRIAELTPKQFQVLKLIHDGLLNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  L ++  TV  +I+++ RK    TR+ A+    + N+
Sbjct: 170 QIAHELNVTEATVKAHISAVFRKLEVNTRTQAVLLLKKLNL 210


>gi|310827838|ref|YP_003960195.1| hypothetical protein ELI_2249 [Eubacterium limosum KIST612]
 gi|308739572|gb|ADO37232.1| hypothetical protein ELI_2249 [Eubacterium limosum KIST612]
          Length = 206

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 34/56 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + ++ R++E +  +++G ++ EI+  L +S  TV NYI++I+ K   + R+    +
Sbjct: 146 YSISERDLEIIEGVAQGLSNREISETLFLSEGTVRNYISNILDKLELRDRTQLAIF 201


>gi|117920179|ref|YP_869371.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|117612511|gb|ABK47965.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 220

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A
Sbjct: 146 DKMANKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 237 IA 238
           + 
Sbjct: 206 VI 207


>gi|88811894|ref|ZP_01127147.1| DNA-binding response regulator, LuxR family protein [Nitrococcus
           mobilis Nb-231]
 gi|88790778|gb|EAR21892.1| DNA-binding response regulator, LuxR family protein [Nitrococcus
           mobilis Nb-231]
          Length = 245

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          +     L   +  +R G + L P    ++ D L E         +
Sbjct: 109 VQRALKAGARGYLLKEATNTELELAIESVRKGKIYLSP---AVVTDVLDE-------CLD 158

Query: 172 MFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                    G + E LT R+ + L  I EG T+ +IA +L +S  TV  + + +M +   
Sbjct: 159 YLGQTSKQEGGELEVLTPRQRQILQLIVEGNTNSDIADLLHLSIKTVEAHRSELMHRLDI 218

Query: 231 KTRSGAIAYAVRNNIV 246
                 + YA+R  I+
Sbjct: 219 HDVPSLVRYAMRMGII 234


>gi|326771790|ref|ZP_08231075.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
 gi|326637923|gb|EGE38824.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
          Length = 203

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 16/174 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +     P  ++  + +   D      ++L+R       +  T          + +    
Sbjct: 41  PVALEHRPDVVLMDVDMPGTDGLSATASLLERLPATRVLIVTTFGRPGFLRRAIQSGA-- 98

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                      ++   P   +    R    GL          +  + +G D  LT RE E
Sbjct: 99  --------HGFVVKDAPATELAESVRRVHAGL--RVVDPALAADSLVFG-DSPLTARETE 147

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L   ++G T  E+A  + +S  T  N+++  M KT   TR+ A+  A +   +
Sbjct: 148 VLQAAADGATVSEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQKGWI 201


>gi|239817344|ref|YP_002946254.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803921|gb|ACS20988.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 237

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ELT R+++ L W+ +GK + EIA +  +S  TV N++++I+     ++R+  I+
Sbjct: 181 ELTPRQMQVLQWVLDGKANKEIAQLANLSEGTVKNHVSTILLLFGVRSRAQLIS 234


>gi|227541066|ref|ZP_03971115.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227183326|gb|EEI64298.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 280

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V      +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 211 VRIKPTTKLSARELDVLSCVALGHTNVEAAKEMGIGAETVKSYLRSVMRKLGAHTRYEAV 270

Query: 238 AYAVRNN 244
             A R  
Sbjct: 271 NAARRIG 277


>gi|148658579|ref|YP_001278784.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570689|gb|ABQ92834.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 221

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  + EG T+ EIAV LG++  TV  ++ SI+RK    +R  A+ +A R+ I
Sbjct: 146 LSERESAVLRLMVEGATNREIAVELGLAVKTVEAHVHSILRKLRQPSRRAALVWARRHRI 205


>gi|56479349|ref|YP_160938.1| LuxR family DNA-binding response regulator [Aromatoleum aromaticum
           EbN1]
 gi|56315392|emb|CAI10037.1| DNA-binding response regulator, LuxR family [Aromatoleum aromaticum
           EbN1]
          Length = 215

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE + L  I+EG TS  IA  L ++ +TV  +  +IMRK    + +    YA+R+ I
Sbjct: 151 ITARERQVLQLIAEGYTSTRIADRLHLAPSTVEVHRRNIMRKLDLHSVAELTKYAIRSGI 210


>gi|271970021|ref|YP_003344217.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270513196|gb|ACZ91474.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 951

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + E++ RE E L  +    ++ EIA  L IS  TV ++++S++RK     R      A
Sbjct: 4   EVEISPREAEVLELVGAHLSNAEIAARLCISVRTVESHVSSLLRKLEVPDRRALARRA 61


>gi|290959189|ref|YP_003490371.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648715|emb|CBG71828.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 200

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            + +   RL EI                 D     D  LT RE E L   ++G    EIA
Sbjct: 102 PKTVSAQRLAEIIRTVHAGNRYVDPELAADAISSGDSPLTAREAEVLELAADGAPVAEIA 161

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
               +S+ TV NY++S + K   + R  A+  A    
Sbjct: 162 ERAALSQGTVRNYLSSAVSKLGVENRHAAVRLARERG 198


>gi|302529224|ref|ZP_07281566.1| two component system response regulator [Streptomyces sp. AA4]
 gi|302438119|gb|EFL09935.1| two component system response regulator [Streptomyces sp. AA4]
          Length = 213

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 10/186 (5%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK------YYNVLQRPTELFCPVFHTLPEN 119
            +    ++  ++V    P  ++  + + E D              P  +    F      
Sbjct: 31  AEAGDGREALALVREHRPDLVLTDVQMPEVDGLEVTRLVTAEPDAPAVVVLTTFDLDEYV 90

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                     +         +   + ++     ++         LL  + +    +    
Sbjct: 91  HEALRHGATGFLLKDTPPRELVKAMHVVGDGEAMLSPSITRR--LLTHFASAATPTS--A 146

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   LT RE E    + +G ++ EIA  LG+S  TV  ++  IM KT    R+     
Sbjct: 147 RTRLEPLTPREREVAVAVGQGSSNAEIARALGLSEATVKVHLGRIMAKTEAANRTQVAIL 206

Query: 240 AVRNNI 245
                +
Sbjct: 207 VHDAGL 212


>gi|45934814|gb|AAS79478.1| putative response regulator [Streptomyces bikiniensis]
          Length = 240

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D  ++   ++ +     ++  D L E  LL    +    + D        LT RE E L 
Sbjct: 132 DQDQLVQLVLAVANGEGVLPGDLLGE--LLGHVGSLRRAALDPGALPLSTLTSREAEMLR 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +SEG  +  IA     S  TV N +  I  +   + R+ A+ YA+RN ++
Sbjct: 190 LVSEGLDTAAIARKTSYSERTVKNVLHEITTRLQLRNRAHAVGYALRNGLI 240


>gi|116049068|ref|YP_792130.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584289|gb|ABJ10304.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 243

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 22/233 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKLDSIVSSDWPFDLVR 88
           D +AR+     T +    M      +G    ++        +++ +D +       D   
Sbjct: 10  DSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVH--GDWAE 67

Query: 89  CMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             +  E+D Y     V +   EL  P F +   +  P   M  R      D+ ++    +
Sbjct: 68  GRSAQERDAYLLHCPVTRHILELDEPFFWSKNPSEDPAR-MTYRIVRGVRDLGQVNGMQV 126

Query: 146 LLFPKGRI-----ILRDRLWEIG----LLAAYQANMFKSY-----DVHWGKDFELTGREV 191
            +F +  +        +RL           A+   +F +       V  G    L+ RE 
Sbjct: 127 PVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERER 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 187 EVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|240168620|ref|ZP_04747279.1| two-component transcriptional regulatory protein DevR
           [Mycobacterium kansasii ATCC 12478]
          Length = 215

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 10/159 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIG 143
           VR    +  +   ++L R  EL C +  +   +   +       + Y         +   
Sbjct: 55  VRLPDGNGIELCRDLLSRMPELRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  D      L++  +  + K   +       LT +E   L  +SEG T+
Sbjct: 115 VKEVGAGRSLL--DNRAAAALMSKLRGGVEKPDPLS-----GLTDQERTLLGLLSEGLTN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +IA  + ++  TV NY++ ++ K   + R+ A  +A +
Sbjct: 168 KQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATQ 206


>gi|78184142|ref|YP_376577.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168436|gb|ABB25533.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 239

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 23/122 (18%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------------------- 185
           +      +  R+RL + G+L+  QA    S  +H                          
Sbjct: 105 IASGCEGLCSRERLGDGGVLSVLQA--MDSDGIHMDPTITGVCQQSRRRPILDGPPLLSD 162

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE + L  +  G ++ EIA  L ++ +T+ + + S++RK   + R+ A+  A ++N
Sbjct: 163 VLSLREEDVLRGLCRGLSNQEIADQLHLAIDTIKHAVTSLLRKLEARDRTQAVLIAFQHN 222

Query: 245 IV 246
           +V
Sbjct: 223 LV 224


>gi|41350162|gb|AAS00424.1| multi-domain regulatory protein, LuxR family [Saccharopolyspora
           spinosa NRRL 18395]
          Length = 796

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 35/69 (50%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   + D+       LT RE E    +S+G ++ +IA +L IS+ T  +++  I+ K + 
Sbjct: 721 HAQPAPDLARSPFDLLTPRESEVAALVSQGLSNKDIAKMLVISQRTAESHVQHILTKLSF 780

Query: 231 KTRSGAIAY 239
            +R+    +
Sbjct: 781 ASRAQIATW 789


>gi|302035957|ref|YP_003796279.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300604021|emb|CBK40353.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 226

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
           +L+ +E   L  ++EG+T+ EIAV L +S  TV NYI+++  K     RS  A  YA
Sbjct: 156 DLSPQERRLLPLVAEGRTNKEIAVALSLSDKTVKNYISNMYSKLGVTRRSQVATLYA 212


>gi|319442522|ref|ZP_07991678.1| LuxR family transcriptional regulator [Corynebacterium variabile
           DSM 44702]
          Length = 281

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V   +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  
Sbjct: 210 SPVRVKQTTKLSARELDVLSCVALGHTNVEAADEMGIGAETVKSYLRSVMRKLGAHTRYE 269

Query: 236 AIAYAVRNN 244
           A+  A R  
Sbjct: 270 AVNAARRIG 278


>gi|300932450|ref|ZP_07147706.1| LuxR family transcriptional regulator [Corynebacterium resistens
           DSM 45100]
          Length = 282

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V   +  +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  
Sbjct: 211 SPVRVKQTTKLSARELDVLACVALGHTNVEAAAEMGIGAETVKSYLRSVMRKLGAHTRYE 270

Query: 236 AIAYAVRNN 244
           A+  A R  
Sbjct: 271 AVNAARRIG 279


>gi|167916620|ref|ZP_02503711.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
          Length = 89

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 9   AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 68

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 69  ASSRKHAVRRALVLGLL 85


>gi|21224647|ref|NP_630426.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|3367740|emb|CAA20065.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)]
          Length = 892

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 39/80 (48%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A+   +    D  +    EL+GRE + L  ++   +++EIA  L +S NTV  ++ S  R
Sbjct: 813 AHGEPVRPGADPAFLVPVELSGRERDVLRRLARMMSTEEIAADLYVSINTVKTHLKSAYR 872

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K A   R  A+  A    ++
Sbjct: 873 KLAVNRRGDAVRRARDLGLL 892


>gi|322390963|ref|ZP_08064469.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321142338|gb|EFX37810.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 199

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 38/81 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +        L+ +E   L  +++G ++ EIA  L +S  T+ NY+++
Sbjct: 117 VLAGQKEYSPELMEGILTHPNPLSPQEKAVLKEVAKGASNQEIADRLFLSNGTIRNYMST 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A   A    
Sbjct: 177 ILTKLDAENRTEAAKIAHEKG 197


>gi|320007624|gb|ADW02474.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 248

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 12/186 (6%)

Query: 64  VRWDLFQEQKL----DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP------VF 113
            R D+  E        ++V    P  ++  + +   D      +       P       F
Sbjct: 35  ARVDIVGEAADGTEVAALVDRTHPDVVLMDIRMPGMDGLAATEELRRRPGAPEVIVLTTF 94

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA--N 171
           H   + +         +       A+I   ++ +     ++       +   AA +   +
Sbjct: 95  HADEQVLRAIRAGAAGFVLKDTPPAQIVEAVLRVAAGEPVLSPAVTRRLMARAAGEGTDD 154

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   L  RE +  + +  G+++ EIA  L +S  TV  +++ I+ +    
Sbjct: 155 GTARRTRARQRFAGLGEREQDVASAVGRGRSNAEIAAELHLSVATVKAHVSRILARLGLN 214

Query: 232 TRSGAI 237
            R    
Sbjct: 215 NRVQIA 220


>gi|163735511|ref|ZP_02142943.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           litoralis Och 149]
 gi|161391131|gb|EDQ15468.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           litoralis Och 149]
          Length = 221

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 15/197 (7%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF-----CPVFHTL 116
           +L   +      L  ++  D  F LV   A +E      V++ P ++       P     
Sbjct: 15  MLADSNPLVLSALSEVIDRDPRFSLVATTATAEGFL-GTVMRVPVQIGIINWSLPALGGA 73

Query: 117 PENITPPAGMDNR-----YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            + I      +N      Y   T D+ R+ +         R    + L +  +  A    
Sbjct: 74  -KLIEVLRDQENAPRIIVYADDTGDLPRLAMTAGAAAFASRSSPAETLLDTCVDVAAGKM 132

Query: 172 MFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +F   DV   +      L+ +E   L  +S+G T+ E+A  L IS NTV  ++ ++  K 
Sbjct: 133 VFPFLDVRELQSDPIHLLSRKERATLDALSKGLTNRELAKELSISTNTVKFHLTNLYEKL 192

Query: 229 ATKTRSGAIAYAVRNNI 245
           + K R+ AIA+   + +
Sbjct: 193 SVKNRAQAIAFYYSSRL 209


>gi|160885790|ref|ZP_02066793.1| hypothetical protein BACOVA_03794 [Bacteroides ovatus ATCC 8483]
 gi|237719368|ref|ZP_04549849.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|260175331|ref|ZP_05761743.1| transcriptional regulator [Bacteroides sp. D2]
 gi|299149242|ref|ZP_07042302.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23]
 gi|315923564|ref|ZP_07919804.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156108603|gb|EDO10348.1| hypothetical protein BACOVA_03794 [Bacteroides ovatus ATCC 8483]
 gi|229451228|gb|EEO57019.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|298512676|gb|EFI36565.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23]
 gi|313697439|gb|EFS34274.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 203

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 4/163 (2%)

Query: 87  VRCMALSEKDKYYN-VLQRPTELFC--PVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           V+ + L   +  ++ V  +  E+    P F    +       +  +   L   V      
Sbjct: 34  VQPIELLSVEALHDCVRTQCPEMLIVNPTFGDYFDVAKFREEISGKRIRLIALVTSFVDA 93

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            +L      I + D L  +    A   N+  S +        L+ RE E +  + +G T+
Sbjct: 94  SLLGKYDESISIFDDLETLSKKIAGLLNVV-SEEEEMDNQDTLSQREKEIVICVVKGMTN 152

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S +TV  +  +I +K    + +G   YA+ N +V
Sbjct: 153 KEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIVNKLV 195


>gi|111020226|ref|YP_703198.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819756|gb|ABG95040.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 612

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 40/107 (37%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           AR  IG      + R     R  +    A  +     +          LT RE +    +
Sbjct: 501 ARRTIGGRAFETEFRRGRGMRFEDAAAFALNEHGSTAAVTTAQPGLTSLTQREQQVAELV 560

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +EG T+  IA  L IS+ T   ++  I+ K    +R+   A+ +   
Sbjct: 561 AEGLTNKAIADKLVISQRTAQGHVEHILSKLGFTSRAQIAAWIIEQR 607


>gi|83647758|ref|YP_436193.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635801|gb|ABC31768.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 223

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 69/188 (36%), Gaps = 19/188 (10%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR---PTELFCPVF-----HTLPE 118
           + F  Q   +++ +D  FDL+  + LS  D       R      ++ PV        + +
Sbjct: 45  NAFNCQAAQTLLETDQSFDLI-LLDLSLPDGRGFKFLRYLTCKRIYIPVAILSASEDIED 103

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                      + S +     I + +  +    + +    +         Q +  +   +
Sbjct: 104 VELSLRSGAIGFISKSSSAMEINLAIRQILNGKQYVPNFYIHRNQ--TPVQDSQLRLDSI 161

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                   T R++E L  +++G  +  I   L ++ +TV +++ ++        R+  ++
Sbjct: 162 --------TPRQMEVLQLLAKGLPNKRICSELSLTEDTVKSHLKALFMHLNVHNRTECVS 213

Query: 239 YAVRNNIV 246
            A R ++V
Sbjct: 214 VATRLHLV 221


>gi|298249678|ref|ZP_06973482.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297547682|gb|EFH81549.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1061

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 125  GMDNRYCSLTFDVARIRIGLM-LLFPKGRIILRDRLWEIGLLAAYQANMFKSYD---VHW 180
              D  Y  L  D  R+   L+ +L P+ R   +       L A       +  D   +H 
Sbjct: 932  AQDEGYQRLFLDEGRVVETLLKMLLPELRETSQVAYVRTLLRAFAHEPGTQQPDNGILHS 991

Query: 181  GKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             KD      L+ +E   L  +  G ++ EIA  L IS NTV  ++ S+ R+     R  A
Sbjct: 992  KKDTLLLEPLSEQEQRVLRLLVAGLSNLEIARELVISVNTVKTHVQSLYRRLNVHNRVEA 1051


>gi|295083862|emb|CBK65385.1| transcriptional regulator [Bacteroides xylanisolvens XB1A]
          Length = 203

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 4/163 (2%)

Query: 87  VRCMALSEKDKYYN-VLQRPTELFC--PVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           V+ + L   +  ++ V  +  E+    P F    +       +  +   L   V      
Sbjct: 34  VQPIELLSVEALHDCVRTQCPEMLIVNPAFGDYFDVAKFREEISGKRIRLIALVTSFVDA 93

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            +L      I + D L  +    A   N+  S +        L+ RE E +  + +G T+
Sbjct: 94  SLLGKYDESISIFDDLETLSKKIAGLLNVV-SEEEEMDNQDTLSQREKEIVICVVKGMTN 152

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S +TV  +  +I +K    + +G   YA+ N +V
Sbjct: 153 KEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIVNKLV 195


>gi|331002765|ref|ZP_08326280.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330407178|gb|EGG86682.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 215

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+E +  + EG ++ +IA  L +S  TV  ++++I  K    +R+  + +  RN
Sbjct: 144 LTKRELEVVLLLKEGYSNAKIAEELFVSEGTVKKHLSNIFGKLQLYSRTEVLVFVERN 201


>gi|226357955|ref|YP_002787695.1| transcriptional regulator, LuxR family [Deinococcus deserti VCD115]
 gi|226320198|gb|ACO48191.1| putative transcriptional regulator, LuxR family [Deinococcus
           deserti VCD115]
          Length = 763

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++          LT RE + +  ++ G +   +A +LGIS  TV+ ++  ++ K   + R
Sbjct: 687 RNSPATPPAQGGLTSRERDVVALVAAGMSDKRVAQVLGISMGTVSKHVGHVLEKLELRNR 746

Query: 234 SGAIAYAVRNNI 245
                +A+ + I
Sbjct: 747 VELARWAIEHGI 758


>gi|167749619|ref|ZP_02421746.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702]
 gi|167657372|gb|EDS01502.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702]
          Length = 207

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
           LT RE++ +  I++G ++ EIA  L +S  TV NYI+ I+ KT  + R+  A+ Y
Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQIAVRY 202


>gi|220921537|ref|YP_002496838.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219946143|gb|ACL56535.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 221

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   + D+  I   +       R +L    W    +A   +   ++ D+   +   L
Sbjct: 102 AAGFIPKSLDIDEIGEAI-------RQVLAGGTWAPPDIALSASEDKETADLMR-RLATL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T ++V  L  +SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  + R  
Sbjct: 154 TPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIASSRIG 211


>gi|120402572|ref|YP_952401.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955390|gb|ABM12395.1| response regulator receiver protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 281

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            V  +   L  L       L+ RL          A+              LTGRE++ L 
Sbjct: 177 SVREVHAELRRLAVDAPAGLQQRLR-------VLADKLSGPADDPATVAPLTGRELDVLA 229

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G T+ E A  L +   TV +Y+ S   K  T+TR  A++ A R +++
Sbjct: 230 QVALGCTNAEAAQRLSLKTETVKSYLRSAATKLGTRTRYEAVSRARRLHLI 280


>gi|88799009|ref|ZP_01114590.1| putative transcriptional regulator, LuxR family protein [Reinekea
           sp. MED297]
 gi|88778236|gb|EAR09430.1| putative transcriptional regulator, LuxR family protein [Reinekea
           sp. MED297]
          Length = 218

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           +     Y   + ++  +   L  L   GR           L                 K 
Sbjct: 103 SAGAVGYLIKSMELESLVNALNTLLEGGRFFS--------LEGIQDPQDIDDDIDAMKKL 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT ++   L+ IS G  + +IA  L I   TV  +++ I RK     R+ A  +
Sbjct: 155 ASLTPKQQHVLSLISRGYLNKQIAYELDIKETTVKTHVSEIFRKLGIFNRTQAAIF 210


>gi|83944309|ref|ZP_00956764.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
 gi|83953350|ref|ZP_00962072.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83842318|gb|EAP81486.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83844853|gb|EAP82735.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
          Length = 206

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 8/186 (4%)

Query: 68  LFQEQKLDSIVSSDWPFDLVR-----CMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L  +   +++ +SD P  + +        L   D     ++    L   +     + +  
Sbjct: 22  LDADGGTETVAASDLPEAMAKIEAEGPFDLVLLDYTMPGMKGLEALPKVMKANEEKPVGL 81

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            +G   R  +           L    P   ++   R    G + A   N     D     
Sbjct: 82  ISGTATRLIAEQALAMGAIGFLPKTLPAKSLVNAVRFMAAGEIYA-PVNFMSGKDDPEET 140

Query: 183 DFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           DFE  L+ RE + L  + E K++ EIA  L +   T+  ++ ++ RK   + R+ A   A
Sbjct: 141 DFEKALSERERQVLRGLMEAKSNKEIARDLELQEVTIKLHVKTLCRKLDARNRTDAAMIA 200

Query: 241 VRNNIV 246
                +
Sbjct: 201 RSAGFI 206


>gi|319795298|ref|YP_004156938.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597761|gb|ADU38827.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 198

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 40/85 (47%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              L        +  D       +L+ R+ + +  + +G ++ +IA  L IS +TV  ++
Sbjct: 112 AAALRGLLMAGSEEADEPPLASSKLSKRQTQLIAMLDKGMSNRDIATDLEISEHTVKVHL 171

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             + R+   K+R+ A+ YA  N ++
Sbjct: 172 WRLFRRLGVKSRTQALHYARTNGLL 196


>gi|302868292|ref|YP_003836929.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|302571151|gb|ADL47353.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
          Length = 207

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  ++EG  ++EIA  L  S  TV N I  +  +   + RS A+AYA+R+ +
Sbjct: 147 LTAREIDVLRLMAEGFDTNEIADELRYSERTVKNVIYGLNHRLKLRNRSHAVAYALRSGM 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|269126233|ref|YP_003299603.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268311191|gb|ACY97565.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 956

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE+E    + EG T+ +IA  L +S  TV  ++++I  K    +R   ++
Sbjct: 893 LSPRELEVARLVMEGCTNQQIAERLFLSIRTVETHLSNIFAKLGVGSRVAMVS 945


>gi|87119848|ref|ZP_01075744.1| two-component system regulatory protein [Marinomonas sp. MED121]
 gi|86164550|gb|EAQ65819.1| two-component system regulatory protein [Marinomonas sp. MED121]
          Length = 209

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 36/67 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   L+  E++ L  I+ G +++EI+ I+  S  T+ N ++ I+ K   + R+ A+  
Sbjct: 143 ENKQDGLSSNEIQVLRLIAAGYSNNEISEIMFKSAGTIRNKVSFILAKLQVRDRTRAVIK 202

Query: 240 AVRNNIV 246
           A+   ++
Sbjct: 203 AIELGVI 209


>gi|127512474|ref|YP_001093671.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126637769|gb|ABO23412.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 219

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D    K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+
Sbjct: 144 ATDQMAAKLADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRT 203

Query: 235 GAIAYAVRN 243
            A+  A++ 
Sbjct: 204 QAVI-ALQQ 211


>gi|262280464|ref|ZP_06058248.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258242|gb|EEY76976.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 216

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y   +   + I   +  +      +  +      L +    +   + +    +  + 
Sbjct: 98  AMGYIPKSAHPSHIGEAIRQVLEGDIWLPPN------LPSNLNLDPRAADETALAERIQS 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 152 LTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|254444769|ref|ZP_05058245.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198259077|gb|EDY83385.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 211

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + EG +S EIA    +S  T++ + ++IMRK   +  +     AV+  +
Sbjct: 148 LTPRETDVLQMVGEGYSSKEIARSFNLSVRTIDAHRSNIMRKLNLRGATDMTRLAVKLKL 207

Query: 246 V 246
           V
Sbjct: 208 V 208


>gi|167725393|ref|ZP_02408629.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
          Length = 86

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K  
Sbjct: 6   AQRPKAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLD 65

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R  A+  A+   ++
Sbjct: 66  ASSRKHAVRRALVLGLL 82


>gi|254228131|ref|ZP_04921560.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262393907|ref|YP_003285761.1| transcriptional regulator LuxR family protein [Vibrio sp. Ex25]
 gi|151939204|gb|EDN58033.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262337501|gb|ACY51296.1| transcriptional regulator LuxR family protein [Vibrio sp. Ex25]
          Length = 212

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA 
Sbjct: 147 KTNPLSRREEAVLKLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHSTAELAKYAF 206

Query: 242 RNNI 245
              +
Sbjct: 207 ETGL 210


>gi|291557697|emb|CBL34814.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium siraeum V10Sc8a]
          Length = 207

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
           LT RE++ +  I++G ++ EIA  L +S  TV NYI+ I+ KT  + R+  A+ Y
Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQIAVRY 202


>gi|291530798|emb|CBK96383.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium siraeum 70/3]
          Length = 207

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
           LT RE++ +  I++G ++ EIA  L +S  TV NYI+ I+ KT  + R+  A+ Y
Sbjct: 148 LTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQIAVRY 202


>gi|226364396|ref|YP_002782178.1| serine/threonine protein kinase [Rhodococcus opacus B4]
 gi|226242885|dbj|BAH53233.1| putative serine/threonine protein kinase [Rhodococcus opacus B4]
          Length = 1097

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 33/87 (37%)

Query: 157  DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            + L      +        +          LT RE +    +++G T+  IA  L IS+ T
Sbjct: 1005 EALGFAAAASYALGESLPAAPRRGDPAAALTKRERQVAGLVAQGLTNKAIAARLVISQRT 1064

Query: 217  VNNYIASIMRKTATKTRSGAIAYAVRN 243
               ++  ++ K    +R+   A+  R 
Sbjct: 1065 AQGHVEHVLAKLGFSSRAQIAAWVARQ 1091


>gi|297543959|ref|YP_003676261.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841734|gb|ADH60250.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 129

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFE-LT 187
             ++  D+    +G + +      +  + +  I LL     N +K   D+   +D E LT
Sbjct: 10  CIAMPLDIDNDIVGYLDISTIKHNMADEMMGFIDLLVYKIVNEYKREMDLESQEDLEKLT 69

Query: 188 GREVECLTWISEGKTSDEIA--VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +++E +   + G    EIA    LGI   TV  +   I+RK   K    AIA A++ N+
Sbjct: 70  DKQIEIIKKCANGY--KEIAISRELGIKPETVKYHKKEIVRKLRVKNFQQAIAKAIKLNL 127

Query: 246 V 246
           +
Sbjct: 128 I 128


>gi|254383996|ref|ZP_04999342.1| nitrate/nitrite response regulator protein narL [Streptomyces sp.
           Mg1]
 gi|194342887|gb|EDX23853.1| nitrate/nitrite response regulator protein narL [Streptomyces sp.
           Mg1]
          Length = 228

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  ++ G  +  IA  L ++  TV N++++++ K    +R  AI  A    
Sbjct: 163 ELTRREREILDLVARGFDNRCIARTLTLADKTVRNHVSAVLGKIGVSSRGQAIVLAREAG 222

Query: 245 I 245
           +
Sbjct: 223 L 223


>gi|91227214|ref|ZP_01261673.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269967094|ref|ZP_06181162.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
 gi|91188742|gb|EAS75030.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269828353|gb|EEZ82619.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
          Length = 212

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA 
Sbjct: 147 KTNPLSRREEAVLKLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHSTAELAKYAF 206

Query: 242 RNNI 245
              +
Sbjct: 207 ETGL 210


>gi|99078080|ref|YP_611338.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035218|gb|ABF62076.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040]
          Length = 239

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 63/185 (34%), Gaps = 17/185 (9%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDN 128
            S  P       +     +   V+      F PV            +     +   G+ N
Sbjct: 53  CSTLPTAWQDRYSAMSYHRIDPVVIGCYTAFHPVDWRDLDWSARLASAYRKDSIAFGVGN 112

Query: 129 RYCSLTFDVARIRIGLMLLFPKGR-----IILRDRLWEIGLLAAYQANMFKSYDVH--WG 181
           +  S+       +  ++ +             +    ++ LLA Y       ++V     
Sbjct: 113 QGYSVPVRGPAGQYAILSITKSCEGEVWDKFTQKHSRDLILLAHYVNRRALEFEVSYYPT 172

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  L+ RE E L+ ++EG +    A  + IS +T+  YI     K   +  + A+A AV
Sbjct: 173 PEQPLSMRESEALSLLAEGMSRARAAEAMAISEHTLRVYIEGARSKLQAQNTTHAVARAV 232

Query: 242 RNNIV 246
              ++
Sbjct: 233 TMGLI 237


>gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074670|gb|ADJ64069.1| LuxR family two component response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L   ++ +    +       N Y         +   L  +    + +  D       L
Sbjct: 78  RFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGRQYL--DSHISREAL 135

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
             Y   + ++          LT R+ E L  I+EG  + EIA  L +S  T+  + A +M
Sbjct: 136 DNYMKRVAQNGTPVEV----LTPRQREILQLIAEGNNTKEIAYQLNVSAKTIETHRAQLM 191

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            +   +   G + YA+R  I
Sbjct: 192 ERLDIRDVPGLVRYAIRTGI 211


>gi|300780522|ref|ZP_07090378.1| LuxR family transcriptional regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300534632|gb|EFK55691.1| LuxR family transcriptional regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 280

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V   +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  
Sbjct: 209 SPVRVKQATKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYE 268

Query: 236 AIAYAVRNN 244
           A+  A R  
Sbjct: 269 AVNAARRIG 277


>gi|255530955|ref|YP_003091327.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255343939|gb|ACU03265.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 267

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 40/66 (60%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +D  L+  E + L ++++G +S +IA    IS NTV N+  ++++KT TK  +  +++A
Sbjct: 202 AEDKLLSHHERDILCYMADGLSSKQIASRFNISENTVANHRKNMLKKTNTKNVAELVSFA 261

Query: 241 VRNNIV 246
            +  ++
Sbjct: 262 CKTQLI 267


>gi|253699734|ref|YP_003020923.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251774584|gb|ACT17165.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 215

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 8/160 (5%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDVARIRIGLML 146
             +  S+  +       P +         P+ +        + +   +  V  +   +  
Sbjct: 60  SDIDGSDTIRSLVSGTFPAKALILSGRAEPKRVADLLNAGASGFVPKSSPVDELLWAVKA 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +   G  +  +       L A       ++     +   LT RE + +  +++GK+S  +
Sbjct: 120 VTGNGFYLPPE-------LDAVVRRKGSTWSAAQPQQVILTPREHDIMVLLAQGKSSRAV 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L IS  TV  + A IM+K      +    YA+R   +
Sbjct: 173 SEQLLISVKTVEAHRAHIMKKLGLSGMAALAKYALRAGFI 212


>gi|110596769|ref|ZP_01385059.1| regulatory protein, LuxR:Response regulator receiver [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341456|gb|EAT59916.1| regulatory protein, LuxR:Response regulator receiver [Chlorobium
           ferrooxidans DSM 13031]
          Length = 217

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+E +  I+ G ++ EIAV   IS +TV  +  +I RK +  +    + YA++  +
Sbjct: 150 LTTSEIEIVRLIAAGLSTKEIAVKKHISFHTVMTHRKNIFRKLSVSSSPELMMYAIKAGL 209

Query: 246 V 246
           +
Sbjct: 210 I 210


>gi|62179158|ref|YP_215575.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62126791|gb|AAX64494.1| fimbrial protein Z, putative transcriptional regulator (LuxR/UhpA
           family) [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713620|gb|EFZ05191.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 241

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    +     ++    AG       N + S  
Sbjct: 79  YPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKR 138

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+  I   + ++         + L        + +N       H   D  L+ REV  L
Sbjct: 139 KDLNDIYNAVKMILSGYSFFPSETL-------NFISNTRTPKGGHH--DMPLSNREVTVL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + ++
Sbjct: 190 RYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL 241


>gi|15596333|ref|NP_249827.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100589|ref|ZP_01364507.1| hypothetical protein PaerPA_01001614 [Pseudomonas aeruginosa PACS2]
 gi|254239506|ref|ZP_04932828.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192]
 gi|9947056|gb|AAG04525.1|AE004543_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126192884|gb|EAZ56947.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192]
          Length = 243

 Score = 75.8 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 22/233 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKLDSIVSSDWPFDLVR 88
           D +AR+     T +    M      +G    ++        +++ +D +       D   
Sbjct: 10  DSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPDEDELIDELFFVH--GDWAE 67

Query: 89  CMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             +  E+D Y     V +   EL  P F +   +  P   M  R      D+ ++    +
Sbjct: 68  GRSAQERDAYLLHCPVTRHILELDEPFFWSKSPSEDPER-MTYRIVRGVRDLGQVNGMQV 126

Query: 146 LLFPKGRI-----ILRDRLWEIG----LLAAYQANMFKSY-----DVHWGKDFELTGREV 191
            +F +  +        +RL           A+   +F +       V  G    L+ RE 
Sbjct: 127 PVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERER 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 187 EVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|299140982|ref|ZP_07034120.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
 gi|298577948|gb|EFI49816.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
          Length = 201

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ I++G  + EI   L I   TV ++  +I+ K   K+ S    YAV +  
Sbjct: 136 LSDREIEVLSLIAQGYINKEIGNQLNIGLTTVISHRKNIVEKLGMKSVSALTIYAVMHGY 195

Query: 246 V 246
           V
Sbjct: 196 V 196


>gi|262202074|ref|YP_003273282.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085421|gb|ACY21389.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 218

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +    +  +    +G  +L DR     LLA  +    +   +      ELT +E E    
Sbjct: 112 LGHNLVAAVRTVGRGGSLLDDR-STAALLAKLRDGKDRPDPLA-----ELTSQEREVFNL 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I EG T+ +IA  + ++  T+ NY++ I+ K   + R+     A +  
Sbjct: 166 IGEGMTNRQIAERMFLAEKTIKNYVSRILAKLDMQRRTQVAVMATKLR 213


>gi|149912607|ref|ZP_01901141.1| two component transcriptional regulator, LuxR [Roseobacter sp.
           AzwK-3b]
 gi|149813013|gb|EDM72839.1| two component transcriptional regulator, LuxR [Roseobacter sp.
           AzwK-3b]
          Length = 217

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 2/158 (1%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L   D     ++    L   +       IT      +R+         +   +    
Sbjct: 60  RYDLVMLDLRMPGVKGLDSLKRVIDLGTVARITLFTANADRHIVKRAIELGVHGVIQKTM 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P   +    RL   G    +  +      V+     ELT  E+  L + +EG T+  IA 
Sbjct: 120 PLNSLESVLRLILSG--QTFLPSSVIEAPVNGSDGDELTEIELLILKFAAEGMTNKSIAS 177

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G++  TV  ++ +I RK     R  A+  A  N ++
Sbjct: 178 QVGLNETTVKMHMRAICRKLRASNRVQAVVIARNNALI 215


>gi|4218542|emb|CAA09631.1| putative two-component response regulator [Streptomyces
           violaceoruber]
          Length = 202

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  LT RE+E L   +EG  + EIA  L +S  TV NY+ S++ K   + R  A+  A
Sbjct: 136 SAESPLTEREMEVLRLTAEGDEAPEIAARLHLSTGTVRNYLTSVVTKLNARNRVDAVRIA 195

Query: 241 VRNN 244
             + 
Sbjct: 196 HESG 199


>gi|85374638|ref|YP_458700.1| LuxR family transcriptional regulator protein [Erythrobacter
           litoralis HTCC2594]
 gi|84787721|gb|ABC63903.1| probable transcriptional regulatory protein, LuxR family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 219

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 41/93 (44%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +  P         L   G  A +QA + +       +   L+ RE E L W++EG ++  
Sbjct: 101 VTLPIEANRFAAMLRRTGSEAVHQAAIRRRMLEARKRIETLSNREREVLEWLTEGSSNKA 160

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           IA  L IS  TV  + A++M K   +  + A+ 
Sbjct: 161 IARELDISPRTVEIHRANMMTKLGARHAAEAVR 193


>gi|329117545|ref|ZP_08246262.1| response regulator receiver domain protein [Streptococcus
           parauberis NCFD 2020]
 gi|326907950|gb|EGE54864.1| response regulator receiver domain protein [Streptococcus
           parauberis NCFD 2020]
          Length = 223

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 71/174 (40%), Gaps = 6/174 (3%)

Query: 78  VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYC 131
           +  + P  ++  + + + D       V  R  ++   +  T  ++    + +    + Y 
Sbjct: 43  IECNKPDIILMDIRMPKMDGVVCTKEVKDRYPDIKIIILTTFDDDEFIFSALKHGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                ++ +   +  ++  G +I  D   ++    +  +    S  V   +   ++  + 
Sbjct: 103 LKGVSMSELHEDIKTVYNGGAMINPDIATKVFKAFSQMSQNTSSIKVKETEIENISKMDW 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +  +  G ++ EI+  L +S  T+ NY+++++ K   + R+    +AV+  +
Sbjct: 163 KIIQQVGLGLSNKEISNKLYLSEGTIRNYLSTVLSKLNLRDRTQLAIWAVQTGV 216


>gi|302337063|ref|YP_003802269.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634248|gb|ADK79675.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 216

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 63/204 (30%), Gaps = 20/204 (9%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
                  + + +      VGA            EQ +DSI     P  ++  + L E   
Sbjct: 12  EAREGFRYLLGLDEEIRVVGAF--------ASAEQLIDSIREVGTPDVVMMDIGLPEMSG 63

Query: 98  YYNVL------QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                       +   L   +F    + ++      + Y         +   +  L+  G
Sbjct: 64  IEATRIIHEKWPQINILILTIFEEEEKILSAIQAGASGYVLKNTRPGELTSQIKALYRGG 123

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             I         +       + K        D+ LT RE++ +  I  G T  EIA    
Sbjct: 124 SPISP------QIARTLLGELRKEKSPADHVDYNLTPRELDVVKGIIAGYTYREIADRYN 177

Query: 212 ISRNTVNNYIASIMRKTATKTRSG 235
           IS +TV  +I  I +K    +R  
Sbjct: 178 ISGSTVKKHILHIYKKLNVSSRVE 201


>gi|300697785|ref|YP_003748446.1| LuxR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074509|emb|CBJ54060.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CFBP2957]
          Length = 181

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT R+ + L   + GK++ EIA  L IS  TV  ++  I+ +   + R+  +A 
Sbjct: 116 LTPRQQDILREAASGKSNVEIARALQISVETVKTHMQQILMRLEARNRTELVAM 169


>gi|261209256|ref|ZP_05923648.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289566005|ref|ZP_06446443.1| regulatory protein [Enterococcus faecium D344SRF]
 gi|294616191|ref|ZP_06695988.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|260076802|gb|EEW64537.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289162203|gb|EFD10065.1| regulatory protein [Enterococcus faecium D344SRF]
 gi|291590946|gb|EFF22658.1| DNA-binding response regulator [Enterococcus faecium E1636]
          Length = 209

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 11/170 (6%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCP----VFHTLPENITPPAG--MDNRYCSLTFDVA 138
           D +        D     ++ P +        +    P+ I        D  Y    F + 
Sbjct: 38  DALVLYETHRPDVLLTDIRMPKQTGIDAAKEILAKFPKAILLLLATFKDEEYIREAFSIG 97

Query: 139 -----RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                  +    ++           ++   ++  +   M     +        + RE+  
Sbjct: 98  VKGYLIKQNLQAIIPSVKSAYNGQAVFGNEIIETFTQMMKNKPTIDSHAYASFSERELAI 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +  ++ GK + EIA  L +S  TV NYI+ ++ K   + R+    Y  ++
Sbjct: 158 IKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAIYFYQH 207


>gi|254511393|ref|ZP_05123460.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
 gi|221535104|gb|EEE38092.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
          Length = 239

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ +T ++ G +  ++A  L IS +T+  YI S   K   +  + AIA A+   +
Sbjct: 177 LSPREIDAMTLLALGYSRAQVAHSLSISEHTLRAYIESARSKLGAQNTTHAIATALSRGL 236

Query: 246 V 246
           +
Sbjct: 237 I 237


>gi|218892898|ref|YP_002441767.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218773126|emb|CAW28938.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 243

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 22/233 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKLDSIVSSDWPFDLVR 88
           D +AR+     T +    M      +G    ++        +++ +D +       D   
Sbjct: 10  DSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVH--GDWAE 67

Query: 89  CMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             +  ++D Y     V +   EL  P F +   +  P   M  R      D+ ++    +
Sbjct: 68  GRSAQQRDAYLLHCPVTRHILELDEPFFWSKSPSEDPER-MTYRIVRGVRDLGQVNGMQV 126

Query: 146 LLFPKGRI-----ILRDRLWEIG----LLAAYQANMFKSY-----DVHWGKDFELTGREV 191
            +F +  +        +RL           A+   +F +       V  G    L+ RE 
Sbjct: 127 PVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSERER 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 187 EVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|194291238|ref|YP_002007145.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193225073|emb|CAQ71084.1| putative response regulator, LuxR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 228

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 62/173 (35%), Gaps = 11/173 (6%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           L+   ++D P  ++  + +               L   +    PE       M +    +
Sbjct: 57  LERAGAADMPDLVITDIGMRGMGGIA--------LAAALHDRYPELAVLIVSMHDNLEYV 108

Query: 134 TFDVARIRIGLMLL-FPKGRII--LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              V     G +L   P   +I  +R  L      +A  A          G    LT RE
Sbjct: 109 RQAVRAGARGYVLKDAPADELIAAIRSVLAGRVFYSARIARGIAEQSPAAGPLDALTPRE 168

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + L  I  G  + EIA  LG+S  TV  +  ++ RK   + R+G + YAV  
Sbjct: 169 RDILRGIGRGLANKEIAAQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVET 221


>gi|126739864|ref|ZP_01755555.1| transcriptional regulator, LuxR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126719096|gb|EBA15807.1| transcriptional regulator, LuxR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 245

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 81/245 (33%), Gaps = 27/245 (11%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYA---LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             ++ L+  +  L        R  A   + E +G    L+        + +  + S++ P
Sbjct: 1   MKKNQLIDSLDKLLAQGPGQDRWMAAEDIAEQLGVKSILVAEA-HSSMKAISWL-STNMP 58

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSL 133
              +      E  K    ++        +               +  T    + N     
Sbjct: 59  GHWMEEYIAEEYVKDDPFVEGLAGGPGSMLFHCGQVRRDEAKTRKAWTLSHQLKNTGFGT 118

Query: 134 TFDVARIRIG----LMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE-- 185
            +     + G     + L  +     + +L   G  LLAA  +    S      K +   
Sbjct: 119 LYCTRFGKDGDFGKFVTLGFEETATDKPQLDMTGKDLLAALLSTTISSESAPKAKQYRTL 178

Query: 186 ----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ R+ E L+ ++EG  +  IA  LGIS   V+ + A   +     TR  A+A A+
Sbjct: 179 QKDILSTRQREVLSLLAEGMMTARIAETLGISEVAVSQHFAKARKALGANTREHALALAM 238

Query: 242 RNNIV 246
              ++
Sbjct: 239 SLGLI 243


>gi|146299747|ref|YP_001194338.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146154165|gb|ABQ05019.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 213

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE E L  I+    + EIA    IS NTVN +  +++ K   K  +G + YAV N 
Sbjct: 151 ELSSREKEILVLIAHEYNTAEIAEKTFISLNTVNTHRRNLLSKLNAKNTAGLVKYAVENG 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|330828902|ref|YP_004391854.1| DNA-binding response regulator, LuxR family [Aeromonas veronii
           B565]
 gi|328804038|gb|AEB49237.1| DNA-binding response regulator, LuxR family [Aeromonas veronii
           B565]
          Length = 212

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 36/70 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D    K   LT RE++ L  I++G ++ ++A +L IS  TV  ++ S+++K   ++R 
Sbjct: 142 ELDHLQQKLESLTRREMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLLKKLEAQSRV 201

Query: 235 GAIAYAVRNN 244
            A    +   
Sbjct: 202 EAAVMYLEQR 211


>gi|291326938|ref|ZP_06126411.2| monoamine regulon transcriptional regulator [Providencia rettgeri
           DSM 1131]
 gi|291312593|gb|EFE53046.1| monoamine regulon transcriptional regulator [Providencia rettgeri
           DSM 1131]
          Length = 222

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
            +     FH    +   P  M +          +I  G+ +L  +     +  +  +  +
Sbjct: 88  RQQNQAFFH----DFMQPNNMADMAEIFIRRKNKIIAGISVL--RDSPFSQQEIMRLNAI 141

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                    ++DV        T +E E +  + EG ++  IA++LG+S +TV  ++ +I 
Sbjct: 142 LPVAE--LMTFDVLPDSLVSYTPKEQEIIHLVREGASNKRIALLLGVSLSTVKTHLRNIF 199

Query: 226 RKTATKTRSGAIA 238
            K     R+  ++
Sbjct: 200 TKANVTNRTELVS 212


>gi|218674909|ref|ZP_03524578.1| transcriptional activator protein [Rhizobium etli GR56]
          Length = 241

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 19/232 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L R+            +  +      SH +L           + ++   +P + V+    
Sbjct: 11  LDRISASPTLQDLETTLDEVRHIYAISHMVLHVTRSSGMADSNPLLMLTYPPEWVKQYRD 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            +      V++     F PV  +  +  +  A    +  ++ F V R  + L +  P+G 
Sbjct: 71  RDYFSIDPVVRLGRRGFLPVEWSASKWDSGRAYGFFK-EAMAFGVGRQGVTLPVRGPQGE 129

Query: 153 IILR----------------DRLWEIGLLAAYQANMFK-SYDVHWGKDF-ELTGREVECL 194
             L                 D + ++  LA +  +       +    DF +L+ RE++CL
Sbjct: 130 RSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRVMVLSGMREIADFPQLSRRELQCL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              + G  + +I   L IS + V  Y+AS  RK    T S A+A A    ++
Sbjct: 190 EMTASGLMAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKATALELI 241


>gi|41409369|ref|NP_962205.1| hypothetical protein MAP3271c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398189|gb|AAS05819.1| hypothetical protein MAP_3271c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 222

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 7/140 (5%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L    F +    +       + +         +   +  +     ++  D      L
Sbjct: 76  LRCLMLTSFTSDEAMLEAILAGASGFVIKDIKGMELARAIKDVGAGKSLL--DNRAAAAL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A  + +  ++  +       LT +E   L  +SEG T+ +IA  + ++  TV NY++ +
Sbjct: 134 MAKLRGSAAQADPLS-----GLTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRL 188

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           + K   + R+ A  +A + N
Sbjct: 189 LAKLGMERRTQAAVFASKLN 208


>gi|331698232|ref|YP_004334471.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952921|gb|AEA26618.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 204

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L   ++G T  +IA  L +S  TV N+++S + KT  +TR+ A+  A  N 
Sbjct: 143 PLTERERDVLVAAADGATVADIARRLHLSEGTVRNHLSSAIGKTDARTRAEAVRIADGNG 202


>gi|319781056|ref|YP_004140532.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166944|gb|ADV10482.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 219

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L  +++G  + +IA  LGIS  T   +  ++M K +    +   AYAVR
Sbjct: 154 PVPLTRRERQILQLVAQGMITRDIAERLGISLPTARKHRENLMGKLSLHNTAELTAYAVR 213

Query: 243 NNI 245
             +
Sbjct: 214 LGL 216


>gi|256784144|ref|ZP_05522575.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 812

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            LL       L +     G   A+   +    D+      EL+GRE + L  ++   +++
Sbjct: 711 PLLATAPLHELAEGWLRPGRPRAHGEPVRSGPDLALLVPVELSGRERDVLRRLARMMSAE 770

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S NTV  ++ S  RK A   R  A+  A    ++
Sbjct: 771 EIAADLYVSVNTVKTHLKSAYRKLAVNRRGDAVRRARDLGLL 812


>gi|197106283|ref|YP_002131660.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196479703|gb|ACG79231.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 215

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L  +      +L   +W   +      +     D    +   LT  ++  L  +  G+ 
Sbjct: 108 SLETMSEALETVLAGEVWAPPVCTPDNDDGTSERDGASERIASLTPAQLRILVGLRRGRL 167

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + +IA  +G+S  TV  ++ +I RK     R+ A+  A
Sbjct: 168 NKQIAYEMGVSEATVKAHMTAIFRKLGVLNRTQAVIAA 205


>gi|188026515|ref|ZP_02962402.2| hypothetical protein PROSTU_04517 [Providencia stuartii ATCC 25827]
 gi|188019236|gb|EDU57276.1| hypothetical protein PROSTU_04517 [Providencia stuartii ATCC 25827]
          Length = 234

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 33/66 (50%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             ++D+        T +E E +  + EG ++  IA+ LG+S +TV  ++ +I  K     
Sbjct: 158 LMTFDILPDSLVSYTPKEQEIIHLVREGASNKRIALQLGVSLSTVKTHLRNIFTKANVSN 217

Query: 233 RSGAIA 238
           R+  ++
Sbjct: 218 RTELVS 223


>gi|126740492|ref|ZP_01756179.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           SK209-2-6]
 gi|126718293|gb|EBA15008.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           SK209-2-6]
          Length = 239

 Score = 75.8 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVH 179
           G+ N+  S+       +  L  +         D        E+ L+  Y       ++  
Sbjct: 109 GVGNQGYSVPIRGPNGQFALFTVSHSCNDANWDEFIDTFSQELILVGHYFNRKALEFEPK 168

Query: 180 WGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              +    L+ RE++ LT ++ G    ++A  L IS +T+  YI S   K      + AI
Sbjct: 169 RKPEHTPPLSPREMDALTLLAIGYNRAQVAKTLSISEHTLRVYIESARFKLGALNTTHAI 228

Query: 238 AYAVRNNIV 246
           A A+   ++
Sbjct: 229 ARAISCGLI 237


>gi|241766560|ref|ZP_04764419.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241363195|gb|EER58778.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 204

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                +   +  V      ELT R+ + L  +++  ++  IA  L +S NTV  ++A+I 
Sbjct: 121 GGVHVHALDTLGVARRTGIELTPRQRQVLGLLTQNYSNKAIARTLDMSVNTVRVHVAAIF 180

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
                  R  A   A+   ++
Sbjct: 181 GALEVDNRVDAARMAITQGLI 201


>gi|212695640|ref|ZP_03303768.1| hypothetical protein ANHYDRO_00157 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677313|gb|EEB36920.1| hypothetical protein ANHYDRO_00157 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 198

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  + +G +  +IA  L IS  T+ N+IA+I  K   K    A   A+   
Sbjct: 133 PLTKREIEVLEELIKGSSKKDIAAKLFISERTLYNHIANIYDKLRAKNIVEAYNKAMELG 192

Query: 245 IV 246
            +
Sbjct: 193 YI 194


>gi|150377712|ref|YP_001314307.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150032259|gb|ABR64374.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 218

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE E    I+ G+ + +IA  L  S  TV  +  S M K    + + A++ A
Sbjct: 136 ARLVSLTPREFEVFGLITRGRRNKQIAYDLSTSERTVKAHRRSAMEKLGVGSLAEAVSIA 195

Query: 241 VRNNIV 246
            R  ++
Sbjct: 196 ERLGLL 201


>gi|107029196|ref|YP_626291.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116687067|ref|YP_840314.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105898360|gb|ABF81318.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116652782|gb|ABK13421.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
          Length = 570

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +  L    A + +            L+ REV+ L  IS G ++ ++A  L +S +TV  +
Sbjct: 485 VAALVTGGAPLLRRTATRQSPAGPRLSAREVDVLRAISRGASNKQVAQALAMSPSTVRTH 544

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +    RK    TR+ A   A    ++
Sbjct: 545 VEKAFRKLECSTRAAATLKASALGLL 570


>gi|183982964|ref|YP_001851255.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183176290|gb|ACC41400.1| transcriptional regulatory protein [Mycobacterium marinum M]
          Length = 1078

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E+  +  + +G ++ +IA  L +S  TV  ++  +  K    +R      A ++
Sbjct: 1020 LTRAELNVVRLVGQGLSNKDIAQRLFLSPRTVQTHLTHVYTKLGFNSRVQLAQQAAQH 1077


>gi|254718410|ref|ZP_05180221.1| Monoamine regulon transcriptional regulator [Brucella sp. 83/13]
 gi|306840178|ref|ZP_07472961.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653]
 gi|306404743|gb|EFM61039.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653]
          Length = 245

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 180 LTAREVEVVHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|118466851|ref|YP_883258.1| DevR family transcriptional regulator [Mycobacterium avium 104]
 gi|254776535|ref|ZP_05218051.1| two component transcriptional regulatory protein devr
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118168138|gb|ABK69035.1| two component transcriptional regulatory protein devr
           [Mycobacterium avium 104]
          Length = 222

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 7/140 (5%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L    F +    +       + +         +   +  +     ++  D      L
Sbjct: 76  LRCLMLTSFTSDEAMLEAILAGASGFVIKDIKGMELARAIKDVGAGKSLL--DNRAAAAL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A  + +  ++  +       LT +E   L  +SEG T+ +IA  + ++  TV NY++ +
Sbjct: 134 MAKLRGSAAQADPLS-----GLTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRL 188

Query: 225 MRKTATKTRSGAIAYAVRNN 244
           + K   + R+ A  +A + N
Sbjct: 189 LAKLGMERRTQAAVFASKLN 208


>gi|29833934|ref|NP_828568.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29611059|dbj|BAC75103.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++EG TS EI  +L IS  TV  + A++++K   + R     YA+R  +V
Sbjct: 169 LKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGLRDRLELTRYAIRAGLV 221


>gi|115525513|ref|YP_782424.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115519460|gb|ABJ07444.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 268

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              V   +   L+GRE   L  +  G ++ +IA    I+  TV  ++ SI+RK     R+
Sbjct: 188 RASVRSPEFPLLSGREEAILDGLVRGLSNKQIARECSITEATVKVHMKSILRKIRVSNRT 247

Query: 235 GAIAYAVRNN 244
            A  +A+  N
Sbjct: 248 QAAIWALDRN 257


>gi|171058278|ref|YP_001790627.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775723|gb|ACB33862.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 209

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    R++ + R +    +A        +       D +L+ RE++ LT I+ GK   +I
Sbjct: 111 IVAAARMVAQGRKYITAEMAQMLVENLTTPSSEAAHD-KLSDRELQTLTMIASGKRLSDI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +S  TV+ Y A ++ K      S    YA+RN +V
Sbjct: 170 AEELTLSPKTVSVYRARVLEKLGLANNSELTVYAIRNGLV 209


>gi|330502238|ref|YP_004379107.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328916524|gb|AEB57355.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
          Length = 216

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA   A +             LT ++   LT + EG  + +IA  L +S  TV  ++ +I
Sbjct: 132 LAEESAPVSDEAKAASAGLASLTPQQFRVLTMVCEGLLNKQIAYELSVSEATVKAHVTAI 191

Query: 225 MRKTATKTRSGAI 237
            RK   +TR+ A 
Sbjct: 192 FRKLGVRTRTQAA 204


>gi|294813789|ref|ZP_06772432.1| two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326388|gb|EFG08031.1| two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
          Length = 224

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 5/157 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+   +    +     +    F      +         +       A +   +      
Sbjct: 68  GLTAMAELRRAVPSARVVILTTFGERDNVLRALEAGGAGFLLKDTAPAELIAAVRAAAAG 127

Query: 151 GRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              +       +   L   + A+     +    +  +L+ RE + L+ + EG ++ +   
Sbjct: 128 DAYLSPGATRHVVDQLATGHAAS---RNERARERVAQLSARERDVLSLLGEGLSNADAGR 184

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L +S  TV  Y++ I+ K   + R  A   A    +
Sbjct: 185 RLHMSEATVKTYVSRILAKLECENRVQAALLARDAGL 221


>gi|296141182|ref|YP_003648425.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296029316|gb|ADG80086.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 213

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 56/166 (33%), Gaps = 7/166 (4%)

Query: 83  PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFD 136
           P  ++  + +   D       +  +  +    V  T  ++             + +    
Sbjct: 48  PDLVLMDLRMPGADGIVGIERIKAQDPDAAVVVLTTFDDDDHLYPALRAGAAGFLAKDIA 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +         +    +  + +  A  A            ++ LT RE E L  
Sbjct: 108 PEDLLDAVRRTLAGDVPLSPATVKRL-IGQALVARTDAPAPAAAPAEYSLTAREREVLAL 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           I +G ++ EIA  L ++  TV +++ +++ KT + TR      A  
Sbjct: 167 IGQGLSNAEIAAELHLAVTTVKSHVTNLLAKTDSSTRLQLALLAAH 212


>gi|227547991|ref|ZP_03978040.1| regulatory family protein [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079936|gb|EEI17899.1| regulatory family protein [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 279

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V   +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  
Sbjct: 208 SPVRIKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYE 267

Query: 236 AIAYAVRNN 244
           A+  A R  
Sbjct: 268 AVNAARRIG 276


>gi|254392355|ref|ZP_05007538.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442209|ref|ZP_08216943.1| LuxR family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706025|gb|EDY51837.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 222

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 5/157 (3%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+   +    +     +    F      +         +       A +   +      
Sbjct: 66  GLTAMAELRRAVPSARVVILTTFGERDNVLRALEAGGAGFLLKDTAPAELIAAVRAAAAG 125

Query: 151 GRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              +       +   L   + A+     +    +  +L+ RE + L+ + EG ++ +   
Sbjct: 126 DAYLSPGATRHVVDQLATGHAAS---RNERARERVAQLSARERDVLSLLGEGLSNADAGR 182

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L +S  TV  Y++ I+ K   + R  A   A    +
Sbjct: 183 RLHMSEATVKTYVSRILAKLECENRVQAALLARDAGL 219


>gi|85710435|ref|ZP_01041499.1| response regulator FixJ [Erythrobacter sp. NAP1]
 gi|85687613|gb|EAQ27618.1| response regulator FixJ [Erythrobacter sp. NAP1]
          Length = 208

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 38/87 (43%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L  I   A       +       +   L+ RE E L W++EG ++  IA  L IS  TV 
Sbjct: 114 LTRIEKEAEIFGAARRRMIEARDRISSLSTREREVLEWLAEGSSNKVIARELDISPRTVE 173

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            + A++M K   +  + A+   +  N+
Sbjct: 174 IHRANMMHKLGARHAAEAVRLKIEANL 200


>gi|148252117|ref|YP_001236702.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146404290|gb|ABQ32796.1| putative Transcriptional regulatory protein, luxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 206

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  IS G ++ E A+ +GIS  T  ++ A  MRK   +  +  +  A+ N I
Sbjct: 146 LTPREREVLELISAGHSNKEGALRMGISPRTFESHRAEAMRKLGARNTAELVRAALLNQI 205


>gi|330960353|gb|EGH60613.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 220

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 4/171 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            I+  D     V  + +  + +      +   +      + PE I            L  
Sbjct: 50  HIILLDICMKYVDGLGVLRELRRTQPHCK---VLILSMLSDPEMILRALEAGAHGYLLKD 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A      +         L   +  + ++            +   + + LT R++E L 
Sbjct: 107 ATATELERALDALRNDERYLSPAIAHV-VIERSNDATPHDGRLESKERYNLTARQLEILR 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I  GK++ EIA  LG+S  TV  + + IM++      +G + + VR  I+
Sbjct: 166 LIVRGKSTREIAAGLGLSIKTVETHRSQIMKRLQIYDVAGLVLFCVRERII 216


>gi|86159866|ref|YP_466651.1| LuxR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776377|gb|ABC83214.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 175

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 13/151 (8%)

Query: 103 QRPTELFCPVFHTLPENITPPA---GMDNRYCSLTFDVAR-------IRIGLMLLFPKGR 152
           ++  E+    F    +    P+   G+ +   +    V R            + +   G+
Sbjct: 28  RQAEEMLKVFFADAADGALMPSELRGLTDGAQNGPPGVRRTLVMEGHGERLRIEVTAVGK 87

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
              +  LW   L    QA    +          LT RE E    +++G  S E+A  LGI
Sbjct: 88  GKTQLHLWREPLPEPLQAGPEAATATPAD---GLTQREREVALLVADGLRSREVAERLGI 144

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +  TV +++ +I  K   + R       V++
Sbjct: 145 ASQTVKSHLKTIFDKLGVRNRVELARRLVQH 175


>gi|88857442|ref|ZP_01132085.1| putative response regulator [Pseudoalteromonas tunicata D2]
 gi|88820639|gb|EAR30451.1| putative response regulator [Pseudoalteromonas tunicata D2]
          Length = 212

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +++ +H+     LT RE + L  + +G ++ EIA  L IS  TV ++I S+  K    
Sbjct: 137 HHQAFAMHFEPIKSLTKRENDVLIELVKGSSNKEIARDLNISSFTVADHIKSMFSKLNVS 196

Query: 232 TRSGAIAYAVRNN 244
           +R   IAY +   
Sbjct: 197 SRGAVIAYGLNQR 209


>gi|23336597|ref|ZP_00121806.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bifidobacterium longum
           DJO10A]
 gi|189439505|ref|YP_001954586.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|227545958|ref|ZP_03976007.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621993|ref|ZP_04665024.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312132910|ref|YP_004000249.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688936|ref|YP_004208670.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690905|ref|YP_004220475.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189427940|gb|ACD98088.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|227213592|gb|EEI81441.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239515184|gb|EEQ55051.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|311773885|gb|ADQ03373.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|320455761|dbj|BAJ66383.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460272|dbj|BAJ70892.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 217

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           I    G+  +   +  DVA +   L  +     ++  + L ++       A+   S D  
Sbjct: 92  IAQAMGLGAKGYLIKQDVAAVGPALQAVMAGQVVLGAEVLGKLTERTPDPADSDDSRDTA 151

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  L  RE E    ++EG  + +IA  L +S  TV N I++I+ K     R+    
Sbjct: 152 DSIEGLLGEREREITALVAEGLDNRDIAARLFLSEGTVRNRISAILDKLGLTNRTQLAI 210


>gi|291166834|gb|EFE28880.1| nitrate/nitrite response regulator protein [Filifactor alocis ATCC
           35896]
          Length = 221

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+E L ++++G ++ +I   L +S  TV  +I++++ K   + R  A  ++ RN
Sbjct: 144 LTKRELEVLFFLNQGYSNAKIGEALFVSEGTVKKHISNLLGKLGLENRMEAGLFSSRN 201


>gi|269103638|ref|ZP_06156335.1| transcriptional regulator LuxR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163536|gb|EEZ42032.1| transcriptional regulator LuxR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 209

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +     D    K   LT ++++ L  +++G  + +IA  L +S  T+  ++ +I RK + 
Sbjct: 135 DALDETDELVEKIATLTPQQLKVLKMLADGLLNKQIAYELDVSEATIKAHMTAIFRKLSV 194

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+   +  NIV
Sbjct: 195 TNRTQAVI--LLQNIV 208


>gi|225022291|ref|ZP_03711483.1| hypothetical protein CORMATOL_02330 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944952|gb|EEG26161.1| hypothetical protein CORMATOL_02330 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 282

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 213 VRVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 272

Query: 238 AYAVRNN 244
             A R  
Sbjct: 273 NAARRIG 279


>gi|291515940|emb|CBK65150.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Alistipes shahii WAL 8301]
          Length = 192

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 38/87 (43%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             +  L         +  V       LT RE E LT I+ G  + ++A  LGI   TV +
Sbjct: 101 RSLMRLQHSVRRPEHALPVQPQAAQPLTEREAEVLTLIAGGLINKQVADRLGIGLTTVIS 160

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  +IM K   +T +G + YA+    V
Sbjct: 161 HRRNIMEKLGIRTAAGLVVYALAAGYV 187


>gi|289651219|ref|ZP_06482562.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 163

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +R   +   + R  +           +L+        + A  +               LT
Sbjct: 51  DRDAIVREAIQRGAVEFHSKAECPEHLLQ-------RIQALLSGEPPEPRTIAATPLPLT 103

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ + L  +  G T+ EIA+ L  S +TV +++ +I+    T  R+ A   A R  +V
Sbjct: 104 SRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHVQAILTILQTSCRTEAADAARRLGLV 162


>gi|269962474|ref|ZP_06176823.1| Transcriptional regulator [Vibrio harveyi 1DA3]
 gi|269832770|gb|EEZ86880.1| Transcriptional regulator [Vibrio harveyi 1DA3]
          Length = 211

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|265983374|ref|ZP_06096109.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|264661966|gb|EEZ32227.1| two component transcriptional regulator [Brucella sp. 83/13]
          Length = 254

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 189 LTAREVEVVHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 240


>gi|224539069|ref|ZP_03679608.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519314|gb|EEF88419.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 250

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I++GK S +IA  L IS NTVN +  +I+ K        A   A   ++
Sbjct: 190 LSDREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEKLQVNNSIEACRIAKELHL 249

Query: 246 V 246
           +
Sbjct: 250 L 250


>gi|296270058|ref|YP_003652690.1| LuxR family ATP-dependent transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296092845|gb|ADG88797.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Thermobispora bispora DSM 43833]
          Length = 913

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    +   LT ++++   +I+EG T+ E+A  L IS  TV+ ++ +I  K    +R   
Sbjct: 842 DPEGEETGALTAQQLQIARFIAEGATNREVAARLFISPRTVDYHVRNIFAKLGIGSRVEL 901

Query: 237 IAY 239
           +  
Sbjct: 902 VRR 904


>gi|312195397|ref|YP_004015458.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226733|gb|ADP79588.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 938

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L+ RE E L  +++  ++ +IA  L +S  TV +++  I+ KT    R     +
Sbjct: 878 PLSDRENEVLALVAQAMSNRDIARALVLSERTVESHMRRILAKTGCANRVELARW 932


>gi|256377037|ref|YP_003100697.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921340|gb|ACU36851.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 208

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEG 200
           +  +    KG  +L   L  +G L  + + + +S  D +      LT RE + L  +SEG
Sbjct: 105 VAAVSALAKGEAVLPGDL--LGKLLDHVSRLRRSVLDPNAPSLSTLTPREADMLRLVSEG 162

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + EIAV +  S  TV N +  +  +   + R+ A+ Y +R+ ++
Sbjct: 163 FGTAEIAVKMSFSERTVKNVLHEVTTRLNLRNRAHAVGYVMRHGLI 208


>gi|188533225|ref|YP_001907022.1| Nitrate/nitrite response regulator protein NarP [Erwinia
           tasmaniensis Et1/99]
 gi|188028267|emb|CAO96125.1| Nitrate/nitrite response regulator protein NarP [Erwinia
           tasmaniensis Et1/99]
          Length = 210

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE E +  ++ G  + +IA +L IS  TV  +I S++RK   ++R  A  
Sbjct: 151 LTVREQEVMREVASGLANKQIAEMLAISEQTVKVHIRSVLRKLHVRSRVAATV 203


>gi|121535873|ref|ZP_01667671.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
 gi|121305538|gb|EAX46482.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
          Length = 216

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ +E + L+ I+ G  + EIA  L IS  TV  Y   IM K   K RS  + +A+ N 
Sbjct: 151 PLSDQEKKVLSLIAAGYANREIAEQLVISVKTVETYKYRIMEKLNCKKRSDLVKFALDNG 210

Query: 245 IV 246
           ++
Sbjct: 211 LL 212


>gi|289666156|ref|ZP_06487737.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670749|ref|ZP_06491824.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 222

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|282863505|ref|ZP_06272564.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561840|gb|EFB67383.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 209

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 31/70 (44%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G    EIA    +S+ TV NY++S   K   + R 
Sbjct: 138 AADAISAGDSPLTAREAEVLELAADGAPVAEIAARASLSQGTVRNYLSSAASKLGAENRH 197

Query: 235 GAIAYAVRNN 244
            A+  A    
Sbjct: 198 AAVRLARERG 207


>gi|305680557|ref|ZP_07403365.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660088|gb|EFM49587.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 281

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 212 VRVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 271

Query: 238 AYAVRNN 244
             A R  
Sbjct: 272 NAARRIG 278


>gi|237811617|ref|YP_002896068.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|237503468|gb|ACQ95786.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
          Length = 363

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 78  VSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +     FDL  V    +      + + Q                +   A  +     +  
Sbjct: 125 LIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVIS 184

Query: 136 DVAR-----IRIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELT 187
              R       + ++LL           L E    A     +A + +           L+
Sbjct: 185 RTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLS 244

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 245 PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 295


>gi|166710233|ref|ZP_02241440.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 222

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|158318246|ref|YP_001510754.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113651|gb|ABW15848.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 215

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 5/170 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +A          L     +    F              + +     
Sbjct: 49  DVVLLDIRMPVLDGLAALRAITADPALTDTRVVMVTTFELDEYVFEALRNGASGFVLKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   + ++     ++       +    A +     + D+       LT RE E + 
Sbjct: 109 EPADLLRAIRVVAAGESLLSPTITRRVIETFARRPAAPAAVDL-----TSLTVREREVMG 163

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  G ++DEIA  L IS  T   +++ +M K + + R+     A +  +
Sbjct: 164 LVGLGLSNDEIAARLVISPATARTHVSRVMVKLSARDRAQLAVLANQAGL 213


>gi|302036415|ref|YP_003796737.1| LuxR family response regulator (fragment) [Candidatus Nitrospira
           defluvii]
 gi|300604479|emb|CBK40811.1| Response regulator, LuxR family (fragment) [Candidatus Nitrospira
           defluvii]
          Length = 106

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  ELT RE E L  +  G T+  IA  L IS  T   + A++M+K      +  +  A+
Sbjct: 37  RPEELTPREQEILQLVWAGLTNRTIAEQLHISIKTAEAHRANMMKKLRVSNIAQLLKTAL 96

Query: 242 RNNIV 246
              ++
Sbjct: 97  EEGLL 101


>gi|288962972|ref|YP_003453266.1| two-component response regulator [Azospirillum sp. B510]
 gi|288915238|dbj|BAI76722.1| two-component response regulator [Azospirillum sp. B510]
          Length = 216

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +++  L  I+EGK + +IA  + ++  TV  ++ +I+RK    TR+ A   A +  +
Sbjct: 148 LTPQQLRVLAGIAEGKLNKQIAYEMNVAETTVKAHVTTILRKLGVLTRTQAAVLASQLAL 207


>gi|254390702|ref|ZP_05005915.1| hypothetical protein SSCG_02977 [Streptomyces clavuligerus ATCC
           27064]
 gi|197704402|gb|EDY50214.1| hypothetical protein SSCG_02977 [Streptomyces clavuligerus ATCC
           27064]
          Length = 247

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 33/60 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L+ +++G ++ +IA  LGIS + V  ++++++ K  +  R+       +  ++
Sbjct: 183 TQRERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLGLL 242


>gi|254383319|ref|ZP_04998671.1| AbsA2 [Streptomyces sp. Mg1]
 gi|194342216|gb|EDX23182.1| AbsA2 [Streptomyces sp. Mg1]
          Length = 219

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 41/137 (29%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                    EN+    G       L        IG +     G   L        +    
Sbjct: 83  LILTTFGEKENVLRALGQGGAGFLLKDSAPGELIGAVRAAAAGDAYLSPAATRHVVDQLA 142

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                   +    +  EL+ RE   L  + EG ++ +    L +S  TV  Y++ I+ K 
Sbjct: 143 SGQAAGRGEAARRRVAELSERERGVLALLGEGLSNADAGRRLHMSEATVKTYVSRILAKL 202

Query: 229 ATKTRSGAIAYAVRNNI 245
             + R  A   A    +
Sbjct: 203 GCENRVQAALLARDAGL 219


>gi|144900206|emb|CAM77070.1| transcriptional activator protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 237

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 31/238 (13%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYA---LTEYVGAS-------HFLLVRWDLFQEQ 72
           V  + +  D L R+  L     +            Y  A+       H+   R+     Q
Sbjct: 15  VEDISSAQDSLRRLAKLANVDFFAYGNSRPGLENPYWDATYPTEWMEHYFANRY-----Q 69

Query: 73  KLDSIVS----SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            +D +V     S  PF     +           L           + + +  T P   DN
Sbjct: 70  FIDPVVLEAQRSHLPFAWRFLLNRPGAMSPEQKLLFAEAAK----YGIRDGFTIPFHSDN 125

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
              +      R R  +     +    ++ RL    LLA Y     +        D EL+ 
Sbjct: 126 GCIAAMSFAFRSRAEM-----EHFANMQPRL---KLLALYYHTAIERLLEVEIPDDELSA 177

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E +CLT++++G++  EI+ +L    + V + + S   K    T + A+  A+   ++
Sbjct: 178 MERQCLTFLADGRSLWEISGLLHRPESDVTSSLRSARDKLGAATTAQAVHKAIAEGLI 235


>gi|21233483|ref|NP_639400.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770447|ref|YP_245209.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115332|gb|AAM43282.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575779|gb|AAY51189.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 222

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|37528119|ref|NP_931464.1| hypothetical protein plu4288 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787556|emb|CAE16660.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 251

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 157 DRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           + +  +  L         + ++        + LT RE E +  I +GK S +IA  L IS
Sbjct: 156 EIIRSVARLHDDMTQQPPAAEMVCLDTQTRYALTPRECEIVELILQGKGSPQIAEKLFIS 215

Query: 214 RNTVNNYIASIMRKTATKTRSGA 236
             TV N+  +I +K     RS A
Sbjct: 216 TGTVKNHRKNIYQKLQI--RSQA 236


>gi|311896181|dbj|BAJ28589.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  +L  R+    L+  Y      S           T RE E L  +  G +++
Sbjct: 117 VRVVAAGEALLAPRVTRR-LIEEYTRRPEPSALPAPAALAGATEREREVLALVGLGFSNE 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S +T   +I  +++K A + R+  +  A  + +V
Sbjct: 176 EIAAELHVSLSTAKTHIGRLLQKLAARDRAQLVIAAYESGLV 217


>gi|220915459|ref|YP_002490763.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953313|gb|ACL63697.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 341

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR---IGLML 146
           ++ +  +    V +R  E+        P       G +          AR R   +    
Sbjct: 191 LSGAGAEAALRVGRRCHEVLHGRPSPCPGCPALRGGGEAWPRVEVRRAARTRGFEVATAT 250

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
             P   +++  R  +   LAA    + ++      + FEL+ RE E L  +  G+ + +I
Sbjct: 251 ALPGDEVLVAVRRVDDAALAA----VREARTAELVRRFELSPREEEVLRLLLIGRQAADI 306

Query: 207 AVILGISRNTVNNYIASIMRKTATKTR 233
              LGI+  T   + ++++RK    +R
Sbjct: 307 GTALGITPRTAKFHQSNVLRKLGASSR 333


>gi|153006198|ref|YP_001380523.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029771|gb|ABS27539.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 232

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I EG  ++E A  LGI+  TV N++  I  K     R   + +A  + +
Sbjct: 168 LTPREREIVALIGEGLRNEEAARRLGITEKTVRNHLTLIFDKVGVSGRLELLVWAYEHGL 227

Query: 246 V 246
           V
Sbjct: 228 V 228


>gi|159898031|ref|YP_001544278.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891070|gb|ABX04150.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 876

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M + Y         L+ RE+E L+ I++G ++  I   L ++ +TV  +   I  K   
Sbjct: 799 RMPQLYPTTPSLPEMLSQRELEILSLIAQGHSNQAICQQLHLALDTVKGHNRRIFEKLQV 858

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+ A+A A    ++
Sbjct: 859 QRRTEAVARARELGLL 874


>gi|110678226|ref|YP_681233.1| LuxR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109454342|gb|ABG30547.1| transcriptional regulator, LuxR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 239

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + +    K  ELT ++   +  I  GK + +IA  L ++  TV  +I +++R+   + R+
Sbjct: 154 ADEFQHPKLAELTPQQQRIMRLICCGKPNKQIAYELDLAEATVKAHITALLRRLGVRNRT 213

Query: 235 GAI-----AYAVRNN 244
            A+     A A +  
Sbjct: 214 QAVVLVEGALAAQRG 228


>gi|330465576|ref|YP_004403319.1| two-component system response regulator [Verrucosispora maris
           AB-18-032]
 gi|328808547|gb|AEB42719.1| two-component system response regulator [Verrucosispora maris
           AB-18-032]
          Length = 216

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 12/163 (7%)

Query: 89  CMALSEKDKYYNVLQ--RPTELFCPVFHTLPENITPPAGM----DNRYCSLTFDVARIRI 142
            +AL + D    V Q  R       V  T+ +     A         Y     D   +  
Sbjct: 57  DIALPDGDGVQAVGQILRHRPETAVVMLTMADEDELVARALRVGARGYLLKDTDPDLVVD 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L  +   G ++        G+ AA       +          LT RE + L  ++ G+ 
Sbjct: 117 ALRTVAGGGVVLGP------GITAAALGRAQPATVSLPPPFDRLTPRERDILAHLAAGED 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +IA   G+S  T+ N +++I+ K     R  A   A    I
Sbjct: 171 NAQIARRFGLSTKTIRNQVSAILGKLGVADRVQAALLARDVGI 213


>gi|325917495|ref|ZP_08179701.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536289|gb|EGD08079.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 222

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|239993174|ref|ZP_04713698.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonas macleodii ATCC 27126]
          Length = 214

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 40/94 (42%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             IL   +W    L+     + + +     K   LT  + + L ++ +G  + +I   L 
Sbjct: 116 EAILDGDVWLPDNLSEDVDEVNEEFSELADKVASLTPSQYKVLCYMRDGLLNKQIGFNLD 175

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+  TV  ++ +I +K     R+ A+  A +  +
Sbjct: 176 IAEATVKAHVTAIFKKLGINNRTQAVLIASQLEL 209


>gi|256423275|ref|YP_003123928.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256038183|gb|ACU61727.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 213

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  ++EG+ S  IA  L IS  TV  + A+++ K         +  A    
Sbjct: 152 ELTKREKQILQLLAEGRKSAAIAEELFISPLTVKTHRATLLHKFQVSNIVTLVNRAKETG 211

Query: 245 IV 246
           ++
Sbjct: 212 LI 213


>gi|23465477|ref|NP_696080.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23326132|gb|AAN24716.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 218

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           I    G+  +   +  DVA +   L  +     ++  + L ++       A+   S D  
Sbjct: 93  IAQAMGLGAKGYLIKQDVAAVGPALQAVMAGQVVLGAEVLGKLTERTPDPADSDDSRDTA 152

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  L  RE E    ++EG  + +IA  L +S  TV N I++I+ K     R+    
Sbjct: 153 DSIEGLLGEREREITALVAEGLDNRDIAARLFLSEGTVRNRISAILDKLGLTNRTQLAI 211


>gi|164511465|emb|CAN89666.1| putative LuxR family regulator [Streptomyces collinus]
          Length = 109

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L  +++G T   IA  +G+S +TV+ Y+  +  KT    R      A +  
Sbjct: 46  LSPREQEVLAHLAQGCTYRIIARRMGLSPHTVDTYVRRLRGKTGLVNRIQLAHLAFQLG 104


>gi|300854927|ref|YP_003779911.1| putative membrane-associated response regulator [Clostridium
           ljungdahlii DSM 13528]
 gi|300435042|gb|ADK14809.1| predicted membrane-associated response regulator with a HTH motif
           [Clostridium ljungdahlii DSM 13528]
          Length = 301

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + + +++T ++ E +  I EG T  +IA  L IS  TV+N+I +I +K    ++   
Sbjct: 236 FKQKYDITEKQGEIIELIMEGVTYKQIAEKLFISPKTVDNHIQNIYKKLNVNSKMQL 292


>gi|260778656|ref|ZP_05887548.1| two component transcriptional regulator LuxR family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604820|gb|EEX31115.1| two component transcriptional regulator LuxR family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 131

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A    ++     V  G    LT RE + L  I EGK + +IA  L I   TV  +  +IM
Sbjct: 52  ALDAKHIEALSGVEEGDIPVLTPREKQVLKLIFEGKRNRDIAEALLIGLKTVETHRMNIM 111

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RK      +  + +A R  I
Sbjct: 112 RKLDAHNVADLMKWAHRMGI 131


>gi|119946176|ref|YP_943856.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
 gi|119864780|gb|ABM04257.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
          Length = 216

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   K   LT RE+  L  +S+G+ + +IAV L IS  TV ++++SI++K     R   +
Sbjct: 145 VLPEKIASLTRRELMVLKNLSQGEANKQIAVNLFISEATVKSHVSSILKKLGASNRVKVV 204


>gi|52082354|ref|YP_081145.1| putative transcriptional regulator YdfI [Bacillus licheniformis
           ATCC 14580]
 gi|52787743|ref|YP_093572.1| YdfI [Bacillus licheniformis ATCC 14580]
 gi|319648225|ref|ZP_08002442.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2]
 gi|52005565|gb|AAU25507.1| putative transcriptional regulator YdfI [Bacillus licheniformis
           ATCC 14580]
 gi|52350245|gb|AAU42879.1| YdfI [Bacillus licheniformis ATCC 14580]
 gi|317389860|gb|EFV70670.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2]
          Length = 212

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D +LT +EV  L  I++G  S  IA  LG+S  TV + + SI  K    +R+ A+  A
Sbjct: 144 SSDTQLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIA 203

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 204 MQRGVL 209


>gi|88191939|pdb|1ZLK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain-Dna
           Complex
 gi|88191940|pdb|1ZLK|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain-Dna
           Complex
 gi|185177931|pdb|3C57|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
           Crystal Form Ii
 gi|185177932|pdb|3C57|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
           Crystal Form Ii
          Length = 95

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A
Sbjct: 28  LTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFA 82


>gi|28899640|ref|NP_799245.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153840435|ref|ZP_01993102.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260361511|ref|ZP_05774558.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|260879130|ref|ZP_05891485.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260895483|ref|ZP_05903979.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260903309|ref|ZP_05911704.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28807892|dbj|BAC61129.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149745902|gb|EDM57032.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308088067|gb|EFO37762.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308091599|gb|EFO41294.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308109554|gb|EFO47094.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308112848|gb|EFO50388.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|328472235|gb|EGF43105.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 209

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 144 AEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIM 203


>gi|126440864|ref|YP_001058373.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           668]
 gi|126220357|gb|ABN83863.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           668]
          Length = 279

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 78  VSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +     FDL  V    +      + + Q                +   A  +     +  
Sbjct: 41  LIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVIS 100

Query: 136 DVAR-----IRIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELT 187
              R       + ++LL           L E    A     +A + +           L+
Sbjct: 101 RTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLS 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 161 PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|67923468|ref|ZP_00516945.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
 gi|67854703|gb|EAM49985.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
          Length = 94

 Score = 75.4 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 45/80 (56%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L     ++ +   +H     ELT  E + +  +++G ++ E+A  L +SR T+ +++++
Sbjct: 12  MLHKANLSLDEGSRIHVPNHVELTPTETKVVQLVAKGLSNREVAEKLSVSRRTIESHVSN 71

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           ++ KT+ K R+    +A+ N
Sbjct: 72  MLNKTSLKNRTELARWAMEN 91


>gi|260578331|ref|ZP_05846246.1| LuxR family bacterial regulatory protein [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603512|gb|EEW16774.1| LuxR family bacterial regulatory protein [Corynebacterium jeikeium
           ATCC 43734]
          Length = 288

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V   +  +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  
Sbjct: 217 SPVRVKQTTKLSARELDVLACVALGHTNVEAAAEMGIGAETVKSYLRSVMRKLGAHTRYE 276

Query: 236 AIAYAVRNN 244
           A+  A R  
Sbjct: 277 AVNAARRIG 285


>gi|170727066|ref|YP_001761092.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169812413|gb|ACA86997.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 219

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 15/169 (8%)

Query: 77  IVSSDWPFDLVR-CMALSEKDKYYNVLQRPT---ELFCPVFHTLPENITPPAGM---DNR 129
           +  SD  +DLV   + +     Y  ++   T   EL   V     +NIT    +      
Sbjct: 47  LEKSDVEYDLVLLDLQMPGSHGYSTLIHLRTHYPELPVVVISAHEDNITISRAVHYGSAG 106

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +   +  +  +   L  +      + +D   E+  +      +  S      K  +LT +
Sbjct: 107 FIPKSSSMDSLAEALTSVLYGDIWLPQD--VELQDIEEDATALIAS------KLSDLTPQ 158

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 159 QYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|56963890|ref|YP_175621.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56910133|dbj|BAD64660.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 204

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 21/170 (12%)

Query: 77  IVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPEN----ITPPAGMDNR 129
            +    P  ++  + + E D       +  R  E+   +  T  +     +   AG +  
Sbjct: 41  QIEKKAPDLVLMDIRMPEMDGIESTKEIKSRWPEMLIMMLTTFQDEQNIRLALQAGAE-G 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   +  VA +   +  L     ++  D L ++                H      LT R
Sbjct: 100 YLLKSTAVANMAKQIRALSAGSSVLDADVLKQL-------------VKPHADALAGLTKR 146

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E E    I++G ++ EIA  L +S  TV N ++ I+ K   + R+    Y
Sbjct: 147 ESEIAECIAQGLSNKEIAAHLFLSVGTVRNTLSVILDKLELRDRTQLAIY 196


>gi|226195323|ref|ZP_03790912.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pakistan 9]
 gi|254298568|ref|ZP_04966020.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           406e]
 gi|157808332|gb|EDO85502.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           406e]
 gi|225932525|gb|EEH28523.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pakistan 9]
          Length = 275

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 78  VSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +     FDL  V    +      + + Q                +   A  +     +  
Sbjct: 37  LIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVIS 96

Query: 136 DVAR-----IRIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELT 187
              R       + ++LL           L E    A     +A + +           L+
Sbjct: 97  RTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 157 PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 207


>gi|160894687|ref|ZP_02075462.1| hypothetical protein CLOL250_02238 [Clostridium sp. L2-50]
 gi|156863621|gb|EDO57052.1| hypothetical protein CLOL250_02238 [Clostridium sp. L2-50]
          Length = 123

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
               K ++LT RE E L+ I     +DEIA  LGIS NT+  ++ +I RKT T ++
Sbjct: 61  PALAKGYDLTPRETEILSLIFSFANNDEIAATLGISENTIQKHLQNIFRKTGTSSK 116


>gi|121605583|ref|YP_982912.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594552|gb|ABM37991.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 224

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A M  +   +      LT R+ E L  + EG ++  IA  L +S  TV  ++ +++    
Sbjct: 147 AGMAHNTSANATPRPRLTPRQCEVLDLLCEGLSNKVIARRLELSEFTVRGHVQAVLGLLG 206

Query: 230 TKTRSGAIAYAVRNNIV 246
             +RS  +  A R+ ++
Sbjct: 207 VSSRSQVMFAARRSGLI 223


>gi|331000094|ref|ZP_08323789.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329572978|gb|EGG54598.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 211

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           LT RE + +   ++G ++ EIA  LGI + TV  + ++   K   ++R  A
Sbjct: 144 LTNREKDVIVLAAKGASNREIADQLGIGQETVKMHCSNAYGKLGVRSRLEA 194


>gi|328883488|emb|CCA56727.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 219

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E +  ++ G ++DEIA  + +S  T   ++   M K   + R+  +  A  + +
Sbjct: 155 LTGREREAVVLVAHGLSNDEIAAHMVVSPLTAKTHVNRAMTKLRARDRAQLVILAYESGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|325927987|ref|ZP_08189208.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325541672|gb|EGD13193.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 222

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|308175685|ref|YP_003922390.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608549|emb|CBI44920.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328555666|gb|AEB26158.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           TA208]
 gi|328914044|gb|AEB65640.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           LL3]
          Length = 199

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G++  LT RE   L  +++GK + EIA  L I   TV NY++ I+ K   K R  AI  +
Sbjct: 133 GEENPLTEREKAVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNRIEAITRS 192

Query: 241 VRNN 244
               
Sbjct: 193 KEKG 196


>gi|293373319|ref|ZP_06619677.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|292631715|gb|EFF50335.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
          Length = 148

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S +        L+ RE E +  + +G T+ EIA  L +S +TV  +  +I +K    + +
Sbjct: 69  SEEEEMDNQDTLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAA 128

Query: 235 GAIAYAVRNNIV 246
           G   YA+ N +V
Sbjct: 129 GLTIYAIVNKLV 140


>gi|262195078|ref|YP_003266287.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078425|gb|ACY14394.1| two component transcriptional regulator, LuxR family [Haliangium
           ochraceum DSM 14365]
          Length = 212

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 66/177 (37%), Gaps = 13/177 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLPE-NITPPAGMDNR 129
            +V    P  L+  + +  KD          L   T++     H   +  +       N 
Sbjct: 41  EVVKEKAPDVLLLDITMPVKDGIEATADILALNVNTKILILSMHADEQYALRTLRAGANG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + S    +  +   +  +    R +          +A   A      D        L+ R
Sbjct: 101 FISKGARLEELLKAITDVHEGQRYLPDK-------IATSFAERHIRPDAEKPLVETLSKR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + +T +++G T+ EIA +L IS  TV+ + + +++K   +  S    +A+++  +
Sbjct: 154 EFQVMTHLAQGMTNREIAGVLQISVKTVDTHRSHVLKKLELRNNSDITRFAIQHGYI 210


>gi|160894495|ref|ZP_02075271.1| hypothetical protein CLOL250_02047 [Clostridium sp. L2-50]
 gi|156863806|gb|EDO57237.1| hypothetical protein CLOL250_02047 [Clostridium sp. L2-50]
          Length = 500

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LT 187
            Y  L  D     + ++ ++ +        + EI  LA      F  Y     + +E LT
Sbjct: 383 GYIRLLADTGNCMVQMLTIY-QKEYEEDSFISEIKELAYSVGTYFPDYLKSPYEYYEPLT 441

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E +    +++G ++D+IA  LG    TV  +  +I RK    TR  A+       ++
Sbjct: 442 QMEEKVFRLMAQGLSNDDIARQLGKKTGTVKFHSCNIFRKLQVPTRQEAVERGREIGLL 500


>gi|170734788|ref|YP_001773902.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820826|gb|ACA95407.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 515

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +  L    A + +            L+ REV+ L  IS G ++ ++A  L +S +TV  +
Sbjct: 430 VAALVTGGAPVLRRTATRPSPAGPRLSAREVDVLRAISRGASNKQVAQALAMSPSTVRTH 489

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +    RK    TR+ A   A    ++
Sbjct: 490 VEKAFRKLECSTRAAATLKASALGLL 515


>gi|68535465|ref|YP_250170.1| LuxR family transcriptional regulator [Corynebacterium jeikeium
           K411]
 gi|68263064|emb|CAI36552.1| putative transcriptional regulator (LuxR family) [Corynebacterium
           jeikeium K411]
          Length = 285

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V   +  +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  
Sbjct: 214 SPVRVKQTTKLSARELDVLACVALGHTNVEAAAEMGIGAETVKSYLRSVMRKLGAHTRYE 273

Query: 236 AIAYAVRNN 244
           A+  A R  
Sbjct: 274 AVNAARRIG 282


>gi|319795660|ref|YP_004157300.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315598123|gb|ADU39189.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 236

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H     ELT R+++ L W+ EGK + EIA +  +S  TV N++++I+     ++R+  I
Sbjct: 173 AHASAWQELTPRQMQVLQWVLEGKANKEIAQLANLSEGTVKNHVSTILLLFGMRSRAQLI 232

Query: 238 A 238
           +
Sbjct: 233 S 233


>gi|307326279|ref|ZP_07605475.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887942|gb|EFN18932.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 224

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 10/133 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          D     L   V     G  L+ P   + L  RL E   L A  A 
Sbjct: 96  VRTALRNGACGFLLKDATPALLVEAVHAAARGGALVSPAVTVRLLKRL-EQAELGAVSAG 154

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +         +   L+ RE++ +  I+ G+T+ EI   L +S +TV  Y+  +  K A +
Sbjct: 155 L---------EAVGLSARELDIVRLIAVGRTNQEICDELFLSLSTVKTYLGRVQSKIAAR 205

Query: 232 TRSGAIAYAVRNN 244
            R    A+A  + 
Sbjct: 206 NRVEIAAWAWEHG 218


>gi|325674463|ref|ZP_08154151.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325554723|gb|EGD24397.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 835

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                 K  D + G++  LT  E   L  ++ G+   EIA  L +S NTV  +  ++ RK
Sbjct: 757 VVHVRAKLLDANAGRNPGLTRTEKVVLGELATGRQLREIARELHVSLNTVRTHTRNLYRK 816

Query: 228 TATKTRSGAIAYAVRNNIV 246
               +R+ A+  A R  ++
Sbjct: 817 LDVASRAEAVETATRRGLL 835


>gi|284993187|ref|YP_003411742.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066433|gb|ADB77371.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 201

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 2/131 (1%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           LP           R   L   +     G +     G  +L D +  +     Y      +
Sbjct: 73  LPGCAVVIVTGHGRAGHLKRALEAGVRGFLP-KTVGAPVLTDVVRTVHRGGRYVDPELAA 131

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             +  G D  LT RE + L   + G   +EIA    +S  TV N++++   K     R  
Sbjct: 132 EAISAG-DSPLTPREADVLELAAGGAPVEEIAARAHLSPGTVRNHLSAAAVKLGAPNRHA 190

Query: 236 AIAYAVRNNIV 246
           A+  A R+  +
Sbjct: 191 AVEAARRHGWI 201


>gi|255037324|ref|YP_003087945.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
 gi|254950080|gb|ACT94780.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
          Length = 216

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 4/118 (3%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     ++      +  +        ++ + +   LA    + +        +DF L+ 
Sbjct: 103 GYIVFEAELDEWERAIRAVSEGKVYYGQEVMLK---LAESSMDKYMQEPAPSTRDF-LSK 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++   ++++IA  L IS  TV  +  ++ +K   +   G    AVR  +V
Sbjct: 159 REIEILRLVASEYSTNKIASELCISDKTVETHRRNLFQKLGVRNSVGLTKIAVRMGVV 216


>gi|226360785|ref|YP_002778563.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226239270|dbj|BAH49618.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 889

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AI 237
               +  L+ RE E    ++ G T+ EIA  L +S  TV  ++  I+ K     R   A 
Sbjct: 819 RTRPEDTLSPREQEVAAHVAAGMTNKEIAAKLVLSPRTVEGHVEHILEKLGMSRRHEIAA 878

Query: 238 AYA 240
           A+A
Sbjct: 879 AFA 881


>gi|189467258|ref|ZP_03016043.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM
           17393]
 gi|189435522|gb|EDV04507.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM
           17393]
          Length = 250

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I++GK S +IA  L IS NTVN +  +I+ K        A   A   ++
Sbjct: 190 LSEREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEKLQVNNSIEACRIAKELHL 249

Query: 246 V 246
           +
Sbjct: 250 L 250


>gi|114047165|ref|YP_737715.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|113888607|gb|ABI42658.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 220

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A
Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 237 IA 238
           + 
Sbjct: 206 VI 207


>gi|25029001|ref|NP_739055.1| hypothetical protein CE2445 [Corynebacterium efficiens YS-314]
 gi|259506010|ref|ZP_05748912.1| LuxR family bacterial regulatory protein [Corynebacterium efficiens
           YS-314]
 gi|23494288|dbj|BAC19255.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166491|gb|EEW51045.1| LuxR family bacterial regulatory protein [Corynebacterium efficiens
           YS-314]
          Length = 281

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +  +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 212 VRVKQTTKLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 271

Query: 238 AYAVRNN 244
             A R  
Sbjct: 272 NAARRIG 278


>gi|323492083|ref|ZP_08097245.1| transcriptional regulator LuxR [Vibrio brasiliensis LMG 20546]
 gi|323313644|gb|EGA66746.1| transcriptional regulator LuxR [Vibrio brasiliensis LMG 20546]
          Length = 211

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|313204967|ref|YP_004043624.1| transcriptional regulator [Paludibacter propionicigenes WB4]
 gi|312444283|gb|ADQ80639.1| transcriptional regulator [Paludibacter propionicigenes WB4]
          Length = 217

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E E L  ++ GKT+ EIA    +S +T+  +  +I RK        A  YA+R  I
Sbjct: 150 LTATEQEILKEMALGKTTKEIASKRHVSVHTIMTHRKNIFRKIEVNNVHEATKYAMRAGI 209

Query: 246 V 246
           V
Sbjct: 210 V 210


>gi|256833722|ref|YP_003162449.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256687253|gb|ACV10146.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 230

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 34/188 (18%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + +R  +         + + WP   V  +   + D++             +   L     
Sbjct: 60  MDIRMPVRDGLSATKDIVTRWPHANVLVLTTFDTDEF-------------IVKALRAGAR 106

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                D     L   V     G   L P              + A   A + +  D    
Sbjct: 107 GFLLKDTSPPDLVRAVNLAGDGHPTLSPS-------------VTAQLIAKVSEEPDTGRQ 153

Query: 182 KDF-----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +       +LT RE++    I++GK++ EI+  L +S  TV  +I+ I  K     R   
Sbjct: 154 RQARRMVEQLTERELDVAQQIAQGKSNQEISQTLYMSIPTVKTHISRIFTKFDVDNRVQ- 212

Query: 237 IAYAVRNN 244
              A+R +
Sbjct: 213 --IAIRMH 218


>gi|226228852|ref|YP_002762958.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226092043|dbj|BAH40488.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 239

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 7/124 (5%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
               +      D     +   V   R G +   P+   +L   L  + +LA+  +     
Sbjct: 110 AEAGVDGFVTEDVTVEEIANAVLAARCGELNCSPRSAAML---LRRLSVLASLTSATNAM 166

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +V       LT RE + L  +  G ++  IA  L I   TV N++  I+ K   +TR  
Sbjct: 167 SNVVA----PLTSREQDILGLLVTGCSNKVIAGELHIQTTTVKNHVHRILEKLGVRTRIE 222

Query: 236 AIAY 239
           A A 
Sbjct: 223 AAAR 226


>gi|222096651|ref|YP_002530708.1| response regulator of salavaricin regulon [Bacillus cereus Q1]
 gi|221240709|gb|ACM13419.1| response regulator of salavaricin regulon [Bacillus cereus Q1]
          Length = 191

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  I  K    +   A+   ++  
Sbjct: 126 ELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHIFDKLNVSSSLEAVTKGIKLG 185

Query: 245 IV 246
            +
Sbjct: 186 YI 187


>gi|221370007|ref|YP_002521103.1| Two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides KD131]
 gi|221163059|gb|ACM04030.1| Two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides KD131]
          Length = 253

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 9/160 (5%)

Query: 89  CMALSEKDKYYNV-LQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLML 146
            +   E   Y    + R       V     +  +    +D    S +   V    +   +
Sbjct: 88  RIDDEEMRSYLLGFIARVAPRRVVVLGEHDDAASLFEAIDCGAASYIPSSVGLEELVAAI 147

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            F   R +L  R   + L    +  M        G     T R+++    + +G  +  I
Sbjct: 148 RFSCPRSVLVPRKSIMAL----RHAMVVPGGEDRGLSRFFTDRQLDVARALLQGAANKTI 203

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +  +TV  +I +IMRK     R+ A   A R N +
Sbjct: 204 AHELNLCESTVKVHIRNIMRKLKATNRTQA---AFRLNQI 240


>gi|209964177|ref|YP_002297092.1| transcriptional regulator, LuxR family protein [Rhodospirillum
           centenum SW]
 gi|209957643|gb|ACI98279.1| transcriptional regulator, LuxR family protein [Rhodospirillum
           centenum SW]
          Length = 221

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT R+ E    + EG+++ E+A  LG+   TV  ++ +I++K     R+ A 
Sbjct: 163 LTARQREIYDLLREGRSNKEMARRLGMREGTVKVHVRTILQKLDVHNRTQAA 214


>gi|217973035|ref|YP_002357786.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217498170|gb|ACK46363.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 220

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D    K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+
Sbjct: 144 AVDKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRT 203

Query: 235 GAIA 238
            A+ 
Sbjct: 204 QAVI 207


>gi|83638367|gb|ABC33901.1| hypothetical protein [Rhodococcus sp. T104]
          Length = 383

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 157 DRLWEIGLLAAYQANMFK---SYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVI 209
           DR+ +   + ++QA       + D    +  E    LT RE E L+ ++ G T+ +IA  
Sbjct: 285 DRISKADAILSHQAAATADSSTDDPGENRVLEINSVLTVREREILSHLATGATNSQIAQA 344

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L IS  TV +++ ++++K    TR+ A A
Sbjct: 345 LVISEGTVKSHVKTVLKKLHAPTRAAATA 373


>gi|332993772|gb|AEF03827.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           sp. SN2]
          Length = 216

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 6/165 (3%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           D  F  V+            V  R  ++   +   L E       +    C      A I
Sbjct: 50  DLVFLDVKMPGNDGLIGLSEVRARFPDVLVVMVTALEEANLIRKALALGACGFIPKSASI 109

Query: 141 RIGLMLLFPKGRIILRDR--LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                +     R+I  ++     +  L           D    K   LT  +++ L  ++
Sbjct: 110 EC---IAEAVERVIDGEQWLPESVANLNDDATETETKTDDFSVKLAMLTPHQLKVLRMVA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +G  + +IA  L IS +TV  ++++++RK     R+ A   A ++
Sbjct: 167 DGLLNKQIAYELDISESTVKQHVSAVLRKLNVINRTKA-GIAFKH 210


>gi|282861615|ref|ZP_06270679.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282563431|gb|EFB68969.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 236

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 18/179 (10%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +LV             V+ R  E    + H L  N +   G+             I  G+
Sbjct: 59  ELVTDAEADRAQASLVVVDRVDEPTVRLLHRLQRNTSTRTGLVVGLFEAGSLQTMIECGV 118

Query: 145 MLLFPKGRIILRDRLWEI-----------------GLLAAYQANMFKSYDVHWGKDFELT 187
             +  +     RD L  +                  LL           D        LT
Sbjct: 119 AAVLRRSEA-DRDGLVHLVTAMAKGEGVLPGDLLGKLLDHVSRVQRTVLDPRGLTLSTLT 177

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++EG  + EIA     S  TV N +  +  +   + R+ A+ YA+RN ++
Sbjct: 178 TREADMLRLVAEGFDTAEIAQKTSYSERTVKNVLHEVATRLHLRNRAHAVGYALRNGLI 236


>gi|262200493|ref|YP_003271701.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262083840|gb|ACY19808.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 271

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 56/176 (31%), Gaps = 25/176 (14%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           +    S   S W         LS+    +  L+R      P     P       G +   
Sbjct: 121 DAAHPSTAMSAWAMYAYTSAQLSDSYATHRGLRRALAAGAPSGMIAP----LLEGGEVIA 176

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             L   V        L     R I    L E                      F LT  E
Sbjct: 177 DELARHVGTFGHLDALAAKAMRAIRAQALPE---------------------QFHLTPSE 215

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L ++  G T+D+IA +L +S NTV  +  SI RK    TR  A+  A R  ++
Sbjct: 216 RRVLDFLPSGYTADQIAGMLSVSVNTVKTHSRSIYRKLQVSTRRDAVMVARRAGLL 271


>gi|76811819|ref|YP_332880.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|76581272|gb|ABA50747.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
          Length = 363

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 78  VSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +     FDL  V    +      + + Q                +   A  +     +  
Sbjct: 125 LIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVIS 184

Query: 136 DVAR-----IRIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELT 187
              R       + ++LL           L E    A     +A + +           L+
Sbjct: 185 RTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLS 244

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 245 PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 295


>gi|53726081|ref|YP_103403.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121601196|ref|YP_992504.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124385129|ref|YP_001026695.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126450323|ref|YP_001080022.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|167000332|ref|ZP_02266150.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254175606|ref|ZP_04882266.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254202076|ref|ZP_04908439.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254207407|ref|ZP_04913757.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254359829|ref|ZP_04976099.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52429504|gb|AAU50097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121230006|gb|ABM52524.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124293149|gb|ABN02418.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126243193|gb|ABO06286.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147746323|gb|EDK53400.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147751301|gb|EDK58368.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148029069|gb|EDK86974.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|160696650|gb|EDP86620.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|243063667|gb|EES45853.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 279

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 78  VSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +     FDL  V    +      + + Q                +   A  +     +  
Sbjct: 41  LIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVIS 100

Query: 136 DVARIRI-----GLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELT 187
              R  +      ++LL           L E    A     +A + +           L+
Sbjct: 101 RTTRPHLIVRTLEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLS 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 161 PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|332994175|gb|AEF04230.1| putative LuxR-family transcriptional regulator [Alteromonas sp.
           SN2]
          Length = 199

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 3/151 (1%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            V  +  + ++       +   +    +H     +     +  R          +   + 
Sbjct: 38  WVSTLHKNWRENIIAASAKCRNVVLLTYHYDRPEMQTALLLGARGYCHALSQQSLFESVS 97

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +  +G I + + L+   +             V   +   LT RE + LT I EG ++ E
Sbjct: 98  RVLKEGGIWVPNELY---VNTTSAVATTLDLKVKIPEIATLTAREKDVLTGILEGLSNKE 154

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           IA  L ++  T+  ++ S+++K   K R G 
Sbjct: 155 IARNLKLTERTIKEHVGSLLKKLNAKDRIGL 185


>gi|256751618|ref|ZP_05492494.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749568|gb|EEU62596.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 143

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFE-LT 187
             +    +    +G + +      +  + +  I LL     N +K   D+   +D E LT
Sbjct: 24  CIATPLYIDNDIVGYLDISTIKHNMADEMIGFIDLLVYKIVNEYKRETDLESQEDLEKLT 83

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++E +   ++G T   I++ LG+  +TV  +   I++K   K    AIA A++ N++
Sbjct: 84  DKQIEIIKKCAKGYTELAISMELGLKPSTVKYHKKEIIKKLRVKNFQQAIAKAIKLNLI 142


>gi|209518476|ref|ZP_03267298.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501109|gb|EEA01143.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 229

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 8/172 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-AGMDNRYCSLT 134
            ++  D     +  +      KY     R   +     H+  E++    A   + Y    
Sbjct: 52  DLILMDLSMPGMSGIDAITVIKYRTPQVR---IIALTIHSSDEHVQEAFAAGADGYVIKD 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   + L+    R    ++    G+      +       H      LT RE   L
Sbjct: 109 ASFEELVGEMRLVMQGKRNPAFEQRAGNGV----SCDPLPGVSRHAQLWHTLTTRERAVL 164

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++EG T+ ++   L +S  T+  + AS+MRK      +G +  A+   ++
Sbjct: 165 RLVAEGCTNRQVGEYLQLSPKTIEKHRASLMRKLDVTNVTGLVLIALDMGVL 216


>gi|21244897|ref|NP_644479.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294626449|ref|ZP_06705049.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294667013|ref|ZP_06732241.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21110608|gb|AAM39015.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|292599248|gb|EFF43385.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603230|gb|EFF46653.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 222

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|84625936|ref|YP_453308.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188579161|ref|YP_001916090.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84369876|dbj|BAE71034.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188523613|gb|ACD61558.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 222

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|119773784|ref|YP_926524.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766284|gb|ABL98854.1| two component transcriptional regulator, LuxR family [Shewanella
           amazonensis SB2B]
          Length = 209

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 16/137 (11%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           N     G+ +R   LT   A+  +  +L       +L+D   ++ L     A +      
Sbjct: 70  NGLRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLEKLKHAMLGHRVIS 129

Query: 179 HWGKDF---------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              +++                LT RE++ L  ++EG ++  I+  L IS  TV  ++ +
Sbjct: 130 EAVEEYLFELKNATDENEWIDALTPRELQILEQLAEGLSNRLISEQLHISEGTVKVHVKN 189

Query: 224 IMRKTATKTRSG-AIAY 239
           ++RK   K+R+  A+ Y
Sbjct: 190 LLRKANAKSRTEMAVRY 206


>gi|319785858|ref|YP_004145333.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464370|gb|ADV26102.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 221

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ELT ++   L  + EG+ + +IA  LG+S  T+  ++ +++RK     R+ A+  A R
Sbjct: 148 ELTPQQFRVLQMLGEGRLNKQIAYDLGVSEATIKAHVTAVLRKLGVGNRTQAVLMAGR 205


>gi|298385304|ref|ZP_06994863.1| LuxR family transcriptional regulator GerE [Bacteroides sp. 1_1_14]
 gi|298262448|gb|EFI05313.1| LuxR family transcriptional regulator GerE [Bacteroides sp. 1_1_14]
          Length = 254

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ R++E L+ I++G  S +IA  L IS  TVN +   I+        + A+  A+R N+
Sbjct: 194 LSRRQLEILSLIAKGVPSKQIADNLNISVYTVNRHRQDILASLKVANTAAAVEIALRMNL 253

Query: 246 V 246
           +
Sbjct: 254 I 254


>gi|294812712|ref|ZP_06771355.1| Response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294325311|gb|EFG06954.1| Response regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 240

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 33/60 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L+ +++G ++ +IA  LGIS + V  ++++++ K  +  R+       +  ++
Sbjct: 176 TQRERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLGLL 235


>gi|228472164|ref|ZP_04056930.1| transcriptional regulator, LuxR family [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276367|gb|EEK15091.1| transcriptional regulator, LuxR family [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 216

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 28/61 (45%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +    D  LT RE E L    EG  S EI+  L IS +TVN +  +I+ K        AI
Sbjct: 156 IETATDTLLTPREREILALAKEGMFSKEISEKLNISVHTVNRHRQNILEKLQVDNMIEAI 215

Query: 238 A 238
            
Sbjct: 216 R 216


>gi|311740790|ref|ZP_07714617.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304310|gb|EFQ80386.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 219

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  I+ G T+ EIA  + I+  TV  +I+S++ K A + R   +  A +  I
Sbjct: 160 TRREREVLALIARGATNGEIAREMVIADTTVKTHISSLLSKLAARDRVALVLLAQKAGI 218


>gi|153808394|ref|ZP_01961062.1| hypothetical protein BACCAC_02688 [Bacteroides caccae ATCC 43185]
 gi|149129297|gb|EDM20513.1| hypothetical protein BACCAC_02688 [Bacteroides caccae ATCC 43185]
          Length = 262

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ R++E L+ I++G  S +IA  L IS  TVN +   I+        + A+  A+R N+
Sbjct: 202 LSRRQLEILSLIAKGVPSKQIADNLNISVYTVNRHRQDILASLKVANTAAAVEIALRMNL 261

Query: 246 V 246
           +
Sbjct: 262 I 262


>gi|150388882|ref|YP_001318931.1| regulatory protein, LuxR [Alkaliphilus metalliredigens QYMF]
 gi|149948744|gb|ABR47272.1| regulatory protein, LuxR [Alkaliphilus metalliredigens QYMF]
          Length = 258

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 6/153 (3%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
            N +    +L  PV H  PE             ++  +V    IG + +    + I  + 
Sbjct: 104 TNAISMAIQLEKPV-HMRPEEHYSEHLKGLYCFAIPLNVDDEIIGYLDVSTINQKITEEM 162

Query: 159 LWEIGLL-----AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +    LL       Y+  +         +  +LT ++++ L  + +  T DEI   L +S
Sbjct: 163 ITITELLPYKIIEEYKKQIKNIEKAFKRESSKLTTKQLQILQLMIKSYTEDEIGKELHVS 222

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            NTV  +  SI  K   ++   AI  A+   +V
Sbjct: 223 INTVKYHKKSIFSKLNVRSSREAIIKALHVKVV 255


>gi|150389353|ref|YP_001319402.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949215|gb|ABR47743.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 220

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E    + EG  + EIA  L I++ T  NYI+SI  K   + R+ A+ +   + 
Sbjct: 160 KLSEREIEIAKLMLEGLNNKEIASELFITQGTAKNYISSIYSKIGVRDRTNAVLFFRSHG 219


>gi|332366199|gb|EGJ43954.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 199

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 37/81 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   ++G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAADGLSNKEIAEKLFLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLDAENRTEAVRIGQDKG 197


>gi|312140063|ref|YP_004007399.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311889402|emb|CBH48718.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 863

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                 K  D + G++  LT  E   L  ++ G+   EIA  L +S NTV  +  ++ RK
Sbjct: 785 VVHVRAKLLDANAGRNPGLTRTEKVVLGELATGRQLREIARELHVSLNTVRTHTRNLYRK 844

Query: 228 TATKTRSGAIAYAVRNNIV 246
               +R+ A+  A R  ++
Sbjct: 845 LDVASRAEAVETATRRGLL 863


>gi|307706263|ref|ZP_07643077.1| competence protein A [Streptococcus mitis SK321]
 gi|307618354|gb|EFN97507.1| competence protein A [Streptococcus mitis SK321]
          Length = 198

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y    ++     +G        + +  D L +  L   Y      S +V       LT 
Sbjct: 84  GYSKKMYEHRAKAMGAYGFL--DKSMNPDELVK-KLEKIYLGGKVFSDEVMVEV---LTP 137

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE+E L  +  G T D++   + +S+ TV+N++A+I  K     R  AI  A +  
Sbjct: 138 REIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIAEQLG 193


>gi|209518473|ref|ZP_03267295.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501106|gb|EEA01140.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 262

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  I+EG+T+ ++   L +S  T+  Y AS+M K A +  +  +  A+   +
Sbjct: 156 LTARERSVLKLIAEGRTNRQVGEYLNLSPKTIEKYRASVMHKLAIENLTELVLVAISMGL 215

Query: 246 V 246
           +
Sbjct: 216 L 216


>gi|183221890|ref|YP_001839886.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911960|ref|YP_001963515.1| two component response regulator receiver protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776636|gb|ABZ94937.1| Receiver component of a two-component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167780312|gb|ABZ98610.1| Putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 212

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   ++  LT RE + L  + +GK    IA +L +S +TV+ Y+ SI +K     R    
Sbjct: 144 VKTNEEESLTDRETQILQLLVKGKKISSIAELLLLSEHTVHGYVKSIYKKLMVHNRVELT 203

Query: 238 AYAVRNNIV 246
             A + +++
Sbjct: 204 LKAQKLSLL 212


>gi|153834921|ref|ZP_01987588.1| response regulator [Vibrio harveyi HY01]
 gi|156972525|ref|YP_001443432.1| transcriptional regulator LuxR [Vibrio harveyi ATCC BAA-1116]
 gi|148868647|gb|EDL67731.1| response regulator [Vibrio harveyi HY01]
 gi|156524119|gb|ABU69205.1| hypothetical protein VIBHAR_00157 [Vibrio harveyi ATCC BAA-1116]
          Length = 211

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|186470572|ref|YP_001861890.1| cyclic nucleotide-binding protein [Burkholderia phymatum STM815]
 gi|184196881|gb|ACC74844.1| cyclic nucleotide-binding protein [Burkholderia phymatum STM815]
          Length = 353

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   LT R+++ L   + G+T+  IA  L I+  TV  ++ ++ +     +R  A   A
Sbjct: 159 SKPHVLTPRQIQVLALAARGETNKSIAKQLNITEGTVKVHLYTVYKALKVGSRGQASVAA 218

Query: 241 VRNNIV 246
            R   +
Sbjct: 219 ARLRQI 224


>gi|160879008|ref|YP_001557976.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427674|gb|ABX41237.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 216

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 72/170 (42%), Gaps = 7/170 (4%)

Query: 83  PFDLVRCMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPP---AGMDNRYCSLTFD 136
           P  ++  + +   D  +    + +R  ++ C +  T  E        A   + Y      
Sbjct: 48  PDVILLDIKMPNMDGIHALSKIKERFPKIKCIMLTTFEEEKFIYPALAYGADGYILKDIK 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              + I ++     G  ++ D + E  LL   +++          K+ E    +++ L  
Sbjct: 108 PD-VLIHMIQSVYDGLFVVHDSIKEYILLQMQRSSNEYKKISLSTKELEFDSTDLDVLKL 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ GK++ EIA  +  S  TV N I+ ++  T TK R+    +A++++++
Sbjct: 167 LTRGKSNSEIASEICYSEGTVKNRISRMLEMTGTKDRTQLAIFALQSSVI 216


>gi|260907087|ref|ZP_05915409.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 231

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 1/155 (0%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +   ++  N ++ P  +    F T              Y         +   +  +   
Sbjct: 68  GIEAIERLVNSVRPPQVVALTSFDTDDYLFRALEAGAAGYLLKDIAPVALAEAIRKVHVG 127

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             I+    + ++        +  +  +       +LT RE+E    +++G ++ EIA   
Sbjct: 128 EPILSPRSMRQLITKVTAGQDQRRQREAEE-MLADLTERELEIAILVAQGLSNQEIADAT 186

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +S  TV  ++  I  K  T  R        R  +
Sbjct: 187 FMSTATVKTHLNRINIKLDTSNRVHIAVAVERAGV 221


>gi|297191953|ref|ZP_06909351.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151144|gb|EFH30977.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 232

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 6/163 (3%)

Query: 89  CMALSEKDK--YYNVLQRPTELFCPVFHT---LPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +   D       L+R       V  T     E +    G       L     R  I 
Sbjct: 67  DIRMPRLDGLAAAEELRRVAPGTAVVMLTTFSEDEYVERALGAGVSGFLLKSGDPRELIA 126

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            +    +G   L   +    +L    A               LTGRE E +  +  G ++
Sbjct: 127 GVRAAAEGAACLSPEIARR-VLDRLGAGRMSRAAEARAALEPLTGREREVVALVGAGLSN 185

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV  ++++++ +   + R      A    +V
Sbjct: 186 AEIAARLFVVEGTVKAHVSAVLARLELRNRVQLAILAYEAGVV 228


>gi|294674324|ref|YP_003574940.1| LuxR family transcriptional regulator [Prevotella ruminicola 23]
 gi|294471985|gb|ADE81374.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23]
          Length = 197

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E ++ I +G  + EIA  L I   TV  +  +IM K   K+ S    YAV +  
Sbjct: 132 LSDREIEVMSLIVQGYINKEIADKLNIGLATVITHRKNIMDKLGMKSVSALTIYAVMHGY 191

Query: 246 V 246
           V
Sbjct: 192 V 192


>gi|258593101|emb|CBE69412.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 227

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E L +I+ G+T+  IA  L IS  T  N+   I+ K    T+  A+A A R
Sbjct: 167 LTPREQEVLRFIARGETAKGIAKALQISTTTARNHTQKILVKLGLHTKLEAVAVAYR 223


>gi|240172696|ref|ZP_04751355.1| two component LuxR family transcriptional regulator [Mycobacterium
           kansasii ATCC 12478]
          Length = 215

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + +T +++G +  +IA  L ++R+T+  ++ S+  K     R  A+A A+R  +
Sbjct: 154 LTEREAQVITMMADGLSVPQIASRLHLARSTIKTHVHSLYEKLGVSDRGAAVAEAMRRRL 213

Query: 246 V 246
           +
Sbjct: 214 L 214


>gi|198277378|ref|ZP_03209909.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135]
 gi|198269876|gb|EDY94146.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135]
          Length = 215

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 73/190 (38%), Gaps = 7/190 (3%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT----ELFCPVFHTLPEN 119
           ++  + Q  +++ + ++    + +  +A+   D Y   ++ P     EL   +    PE 
Sbjct: 21  IKHVVSQMPEIEKVYTASSGAEAMLLIAMQPFDIYLLDVELPDTNGFELIETILQKHPEA 80

Query: 120 ITPPAGM-DNRYCSLTFDVARIRIGLMLLFPKGRIIL--RDRLWEIGLLAAYQANMFKSY 176
                 M +  +       A I   ++       + L  +  L     L     ++    
Sbjct: 81  RILINTMHEEIWILKRLTKASISGAILKSADINELTLAIQTILKGGQYLCKRFKSILNRM 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   +LT RE+E L  I++G  + EIA +L +S NT+  +  S+M K   +     
Sbjct: 141 QTEEQIKEQLTLREMEVLQAIAKGFNTREIAELLHVSNNTIETHRKSLMSKLEARNAVDL 200

Query: 237 IAYAVRNNIV 246
           +  A+   I+
Sbjct: 201 VLKAINLGII 210


>gi|167765236|ref|ZP_02437349.1| hypothetical protein BACSTE_03624 [Bacteroides stercoris ATCC
           43183]
 gi|167696864|gb|EDS13443.1| hypothetical protein BACSTE_03624 [Bacteroides stercoris ATCC
           43183]
          Length = 204

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  D    +   L+ RE E +T + +G T+  IA  L +S +TV  +  +I RK    
Sbjct: 121 HTEEEDEKDSEQETLSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIH 180

Query: 232 TRSGAIAYAVRNNIV 246
           + +G   YA+ N +V
Sbjct: 181 SPAGLTIYAIVNKLV 195


>gi|73540228|ref|YP_294748.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72117641|gb|AAZ59904.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 212

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-------GKDFELTG 188
            V  +R G     P+ R +        G+++ Y      + D          GK   LT 
Sbjct: 95  PVQALRAGAHGFVPRQRDLAEMVQAARGVMSGYLVFPTHTLDAARKLRLPSAGKLARLTA 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L +++ G ++  I   L IS  TV+ +  +IM K    +    + YA ++ ++
Sbjct: 155 RELTVLQYLARGHSNKTIGARLLISSKTVSTHKTNIMCKLNVGSVVEMVDYARQHRLL 212


>gi|78049832|ref|YP_366007.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78038262|emb|CAJ26007.1| two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 222

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|110632702|ref|YP_672910.1| two component LuxR family transcriptional regulator [Mesorhizobium
           sp. BNC1]
 gi|110283686|gb|ABG61745.1| two component transcriptional regulator, LuxR family [Chelativorans
           sp. BNC1]
          Length = 216

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT R++E L  + +GK++  I   L I+  TV N++  I++      R+ A+  A   
Sbjct: 151 LGLTERQLEVLALMMQGKSNKAICRELDIAEPTVKNHVTCILKALKVSNRTEAVIAASAL 210

Query: 244 N 244
            
Sbjct: 211 G 211


>gi|255325933|ref|ZP_05367025.1| LuxR-family transcriptional regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311740234|ref|ZP_07714066.1| LuxR family bacterial regulatory protein [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297145|gb|EET76470.1| LuxR-family transcriptional regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311304789|gb|EFQ80860.1| LuxR family bacterial regulatory protein [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 279

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V   +  +L+ RE++ L+ ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  
Sbjct: 208 SPVRVKQSTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYE 267

Query: 236 AIAYAVRNN 244
           A+  A R  
Sbjct: 268 AVNAARRIG 276


>gi|111026426|ref|YP_708709.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110825269|gb|ABH00551.1| protein kinase/ transcriptional regulator, LuxR family [Rhodococcus
            jostii RHA1]
          Length = 1082

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%)

Query: 139  RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            R     + L      + + R+ ++    AY      +          LT RE +    ++
Sbjct: 975  RTVRRALGLQGFEDGLRKGRVLDLDAAIAYALGNTSTPQPLADAPTNLTKRERQVAELVA 1034

Query: 199  EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EG T+ +IA  L IS  T   ++  ++ K    +R+   A+
Sbjct: 1035 EGLTNRKIADRLVISPRTAQGHVEHVLTKLGFTSRAQIAAW 1075


>gi|86608718|ref|YP_477480.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557260|gb|ABD02217.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 198

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+  L  + EG  + +IA  LG+S  TV  Y ++  RK     R  A+  A +  
Sbjct: 137 KLTPRELCVLQLMKEGLANKQIARRLGLSIETVKEYASTAYRKLDASDRVTALLKAQQLG 196

Query: 245 IV 246
           I+
Sbjct: 197 IL 198


>gi|304409083|ref|ZP_07390704.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307303086|ref|ZP_07582841.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304352904|gb|EFM17301.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306913446|gb|EFN43868.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 220

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D    K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+
Sbjct: 144 AVDKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRT 203

Query: 235 GAIA 238
            A+ 
Sbjct: 204 QAVI 207


>gi|254823399|ref|ZP_05228400.1| hypothetical protein MintA_25951 [Mycobacterium intracellulare ATCC
           13950]
          Length = 871

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              LA        + +    +    +GRE + +  ++ G ++ +IA  L IS  TV  ++
Sbjct: 779 AHALAGQCGVRTPALEAA-ARPLPFSGRERQIVLLVAAGLSNRQIADRLVISVRTVEGHL 837

Query: 222 ASIMRKTATKTRSGAI 237
             +  K     R   +
Sbjct: 838 YRLFTKLGVNNRDQLV 853


>gi|329926657|ref|ZP_08281068.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328939066|gb|EGG35431.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 216

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 17/183 (9%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPEN 119
           +   D  Q      +V    P  ++  + +   +     + + Q   +    +  T  E 
Sbjct: 32  VATTDNGQ--TACELVEQLRPQLVLMDIEMPVMNGIAATHQIKQSNPDTIVLILTTFTEE 89

Query: 120 ---ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I   A   + Y    F   +I   +       R  +R  L     +AA  A   ++ 
Sbjct: 90  DFIIEALAKGASGYLLKDFTSHKIIASI-------REAIRGELMLPSKVAAKLAARLRTT 142

Query: 177 DVH--WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            V     +++ LT RE++    ++E K + EIA +L I+  TV NYI+ I  K     R+
Sbjct: 143 GVPQIPVQNYNLTPRELQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRT 202

Query: 235 GAI 237
            AI
Sbjct: 203 KAI 205


>gi|317507118|ref|ZP_07964879.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254612|gb|EFV13921.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 214

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A       ++     G    LT +E   L  I EG T+ +IA  + ++  TV NY++ ++
Sbjct: 135 AEALIRQLRAGTPDPGPLASLTEQERVLLDLIGEGLTNRQIAERMFLAEKTVRNYVSKLL 194

Query: 226 RKTATKTRSGAIAYAVRN 243
            K   + R+ A   AVR 
Sbjct: 195 AKLGVERRTQAAVLAVRT 212


>gi|304437977|ref|ZP_07397921.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368931|gb|EFM22612.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 212

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 57/176 (32%), Gaps = 12/176 (6%)

Query: 78  VSSDWPFDLV-RCMALSEKDKYYNVLQ-RPTE----LFCPVFHTLPENITPPA-GMDNRY 130
           + +  P DLV   +++        + + R       +     H   E I          Y
Sbjct: 41  LLAQQPIDLVIMDISMPGMGGLACIREIRARFPVVKILVLSMHEDEEYIYKAMQYGAMGY 100

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T     +   L  L    R +  +    +  +         + +        LT RE
Sbjct: 101 LPKTSADNELFDALQALSQGRRYLSPNAQQSLMDI-----MFRPAEEAADDPRSVLTARE 155

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E    +  G T  EIA  L +S  TV+ +   I  K     RS  +  A+RN ++
Sbjct: 156 REVFDELIHGYTITEIAERLHLSVKTVDTHKKHIYEKLHCSRRSDLVTLALRNGLL 211


>gi|291482971|dbj|BAI84046.1| hypothetical protein BSNT_00932 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 213

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L       I  + L +  +L   Q   F+        + +LT +EV  L  I++G  S  
Sbjct: 110 LFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRS-ETQLTEKEVIVLKAIAKGLKSKA 168

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  TV + + SI  K    +R+ A+  A++  I+
Sbjct: 169 IAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGIL 209


>gi|284990646|ref|YP_003409200.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063891|gb|ADB74829.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 220

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE E L  +  G  + +IA  LGI  +TV  ++ S+ ++   + R+ A  +A  +
Sbjct: 145 ELTEREQEVLALVGHGLANKQIARRLGIRESTVKAHLTSVFQRIGVRDRTSATLWARTH 203


>gi|325290812|ref|YP_004266993.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966213|gb|ADY56992.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 226

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            T REVE    +++G  + EIA  LGI + TV+ +I +I +K    TR  A+  
Sbjct: 167 FTSREVEVARLMNKGLQNKEIAAALGIKKRTVDLHIRNIQKKLKVTTRLEAVVK 220


>gi|284034369|ref|YP_003384300.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283813662|gb|ADB35501.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 199

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D  LT RE E L  ++ G T+ EIA  L +S  TV NY++ I+ KT  ++R  AI  
Sbjct: 133 RAGDNPLTDRECEVLRQVTTGATAQEIARTLSLSAGTVRNYLSRILTKTGARSRIEAIRK 192

Query: 240 AVRNNIV 246
           A     +
Sbjct: 193 AQDAGWI 199


>gi|261406784|ref|YP_003243025.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283247|gb|ACX65218.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 216

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 17/183 (9%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPEN 119
           +   D  Q      +V    P  ++  + +   +     + + Q   +    +  T  E 
Sbjct: 32  VATTDNGQ--TACELVEQLRPQLVLMDIEMPVMNGIAATHQIKQSNPDTIVLILTTFTEE 89

Query: 120 ---ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I   A   + Y    F   +I   +       R  +R  L     +AA  A   ++ 
Sbjct: 90  DFIIEALAKGASGYLLKDFTSQKIIASI-------REAIRGELMLPSKVAAKLAARLRTT 142

Query: 177 DVH--WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            V     +++ LT RE++    ++E K + EIA +L I+  TV NYI+ I  K     R+
Sbjct: 143 GVPQFPVQNYNLTPRELQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMNDRT 202

Query: 235 GAI 237
            AI
Sbjct: 203 KAI 205


>gi|188026303|ref|ZP_02961623.2| hypothetical protein PROSTU_03665 [Providencia stuartii ATCC 25827]
 gi|188022418|gb|EDU60458.1| hypothetical protein PROSTU_03665 [Providencia stuartii ATCC 25827]
          Length = 211

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 38/93 (40%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              FP     +   +     L A + +  K Y+    K   L+ RE E +  I EG TS 
Sbjct: 106 FFSFPFKDSDIAHAVSHAMELFANEHSELKKYNKLADKFDRLSNREKEIMDMILEGNTSK 165

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E A  L +S  TV  + ++I  K   K+    I
Sbjct: 166 ETAEKLALSPRTVEVHRSNIYTKLGIKSLPQLI 198


>gi|126453676|ref|YP_001065612.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106a]
 gi|134283901|ref|ZP_01770597.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           305]
 gi|167718883|ref|ZP_02402119.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167737890|ref|ZP_02410664.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167815073|ref|ZP_02446753.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167823489|ref|ZP_02454960.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167845041|ref|ZP_02470549.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167893583|ref|ZP_02480985.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167910266|ref|ZP_02497357.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|217419942|ref|ZP_03451448.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           576]
 gi|242316523|ref|ZP_04815539.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106b]
 gi|254181152|ref|ZP_04887749.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1655]
 gi|254190516|ref|ZP_04897023.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195131|ref|ZP_04901560.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           S13]
 gi|254257993|ref|ZP_04949047.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1710a]
 gi|126227318|gb|ABN90858.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106a]
 gi|134244690|gb|EBA44788.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           305]
 gi|157938191|gb|EDO93861.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169651879|gb|EDS84572.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           S13]
 gi|184211690|gb|EDU08733.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1655]
 gi|217397246|gb|EEC37262.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           576]
 gi|242139762|gb|EES26164.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106b]
 gi|254216682|gb|EET06066.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1710a]
          Length = 279

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 78  VSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +     FDL  V    +      + + Q                +   A  +     +  
Sbjct: 41  LIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVIS 100

Query: 136 DVAR-----IRIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELT 187
              R       + ++LL           L E    A     +A + +           L+
Sbjct: 101 RTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLS 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 161 PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|210634369|ref|ZP_03298095.1| hypothetical protein COLSTE_02017 [Collinsella stercoris DSM 13279]
 gi|210158848|gb|EEA89819.1| hypothetical protein COLSTE_02017 [Collinsella stercoris DSM 13279]
          Length = 307

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
           ELT RE E +  ++EG  + EI+    IS  TV N I+S+++KT  K R+  A+A+
Sbjct: 246 ELTDREYEVVRLVAEGLDNHEISAAAFISEGTVRNRISSVLQKTGYKNRTQLAVAW 301


>gi|183983463|ref|YP_001851754.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
 gi|183176789|gb|ACC41899.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
          Length = 217

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           L     L    F +    +       + Y         +   +  +     ++  D    
Sbjct: 73  LPELRCLMLTSFTSDEAMLEAILAGASGYVVKDIKGMELARAIKDVGAGKSLL--DNRAA 130

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             L+A  +    +   +       LT +E   L  +SEG T+ +IA  + ++  TV NY+
Sbjct: 131 AALMAKLRGGAEQKDPLS-----GLTEQERTLLGHLSEGLTNRQIAARMFLAEKTVKNYV 185

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
           + ++ K   + R+ A  +A R  
Sbjct: 186 SRLLAKLGMERRTQAAVFASRLG 208


>gi|150007891|ref|YP_001302634.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|256840150|ref|ZP_05545659.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262381608|ref|ZP_06074746.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|149936315|gb|ABR43012.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|256739080|gb|EEU52405.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262296785|gb|EEY84715.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
          Length = 109

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT RE E L  I +G  S EIA  L +S  TVNN+  +I+ K        AI  A  
Sbjct: 45  EPQLTKREKEILILIRQGFLSKEIAYKLNLSIYTVNNHRKNILAKLNVDNAIEAINKAEN 104

Query: 243 NNIV 246
             I+
Sbjct: 105 FGIL 108


>gi|314991314|ref|ZP_07856793.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594087|gb|EFR72932.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
          Length = 209

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +   M     +        + RE+  +  ++ GK + EIA  L +S  TV NYI+ +
Sbjct: 129 IETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQL 188

Query: 225 MRKTATKTRSGAIAYAVRN 243
           + K   + R+    Y  ++
Sbjct: 189 LEKLDLRDRTQLAIYFYQH 207


>gi|269148498|gb|ACZ28637.1| two component transcriptional regulator LuxR family [uncultured
           organism]
          Length = 203

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 11/160 (6%)

Query: 83  PFDLVRCMALSEKDKY-YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           P  LV  + + + D      + +  ++  P+           +    +  +  F      
Sbjct: 49  PGCLVLDIRMPDMDGMELQQVLKEKQVSLPIIFITGHGEVSLSVKALKEGAYDFIEKPFE 108

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             ++L      I+L     +   LA  +A++ +  +        LT RE E +  I++GK
Sbjct: 109 DEVLLESIHDAIVLD---AKNRQLAEREADIRRRCE-------RLTPREKEVMQHIADGK 158

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++ EIA +L +S  TV  + A +M K   K+ +  +  A+
Sbjct: 159 SNKEIAALLELSHRTVEVHRARLMEKMEVKSLAELVPMAL 198


>gi|298244596|ref|ZP_06968402.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297552077|gb|EFH85942.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 732

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 5/158 (3%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             + L +  +   +L +  E   P  +                    F +A+  +   LL
Sbjct: 568 EKLDLGQVSEALEMLLQAQEDNLPPGNRFLAVDILLTLGKIYLAQGDFALAQTHLRQALL 627

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                  L D   ++ + A  + +  +      G    L+  E   L  +  G ++ EIA
Sbjct: 628 SACK---LSDE--KVIVEAQRELDRLEGRVETNGLVEPLSAHEERVLHLLIAGLSNQEIA 682

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS NTV  +I  + +K     R  A   A + ++
Sbjct: 683 SELIISVNTVKYHIKHLYQKLGVSNRLQASEAARQLHL 720


>gi|291286070|ref|YP_003502886.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883230|gb|ADD66930.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 193

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE+E   ++++G+++ EIA  + I+  TV  ++ SI  KT  + R   +A A+R  
Sbjct: 138 LSEREMEVARYVAQGQSNIEIADNMDITVRTVKAHLTSIFNKTGLRDR---VALALRLK 193


>gi|115525914|ref|YP_782825.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115519861|gb|ABJ07845.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 210

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q    K   +++     LT RE E L   S G T+ E    LGIS  T+  + A+IM+K 
Sbjct: 132 QGLAPKVPSLNFPGREPLTMREREVLDLFSSGNTNKEAGRQLGISPRTIEYHRANIMKKL 191

Query: 229 ATKTRSGAIA 238
             K  +  + 
Sbjct: 192 GAKNATDLVR 201


>gi|110632953|ref|YP_673161.1| two component LuxR family transcriptional regulator [Mesorhizobium
           sp. BNC1]
 gi|110283937|gb|ABG61996.1| two component transcriptional regulator, LuxR family [Chelativorans
           sp. BNC1]
          Length = 228

 Score = 75.4 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           ++   +   S +        LT R+ E L  + +G ++ EIA  L +   TV  ++A++ 
Sbjct: 142 SSQAVSSEPSSEKPGRGVEHLTPRQREVLALLVDGLSNKEIARKLRLGEGTVKIHMAALF 201

Query: 226 RKTATKTRSGAIAYAVR 242
           R    + R  A A  VR
Sbjct: 202 RSLGVRNRQAAAAAGVR 218


>gi|325002840|ref|ZP_08123952.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 212

 Score = 75.0 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            + D  R+  G+  +     ++  +    +  ++ Y            G    LT RE +
Sbjct: 104 KSVDAPRLTDGVRAVARGDGVLAPEITRRV--ISRYAGAPRPGSVPGLGA---LTARERD 158

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +  G ++ E++  L IS  T   +++ ++ K   ++R+ A   A    +V
Sbjct: 159 VLAGLGRGLSNAELSAELVISEGTTKTHVSRVLAKLGLRSRTQAAIAAQDAGLV 212


>gi|256372218|ref|YP_003110042.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008802|gb|ACU54369.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 223

 Score = 75.0 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 41/97 (42%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           LL    R+   + L +  L       +    D       EL+ +E      I +GKT+ E
Sbjct: 111 LLDALRRVAKGESLIDPALTVRLLERIRHPQDAGDDPLAELSPQERRIFDLIVDGKTNRE 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           IA  + ++  TV NY+++I+ K     RS   A   R
Sbjct: 171 IAESVFLAEKTVKNYVSNILSKLGMHHRSEIAALGAR 207


>gi|229821847|ref|YP_002883373.1| LuxR family transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229567760|gb|ACQ81611.1| transcriptional regulator, LuxR family [Beutenbergia cavernae DSM
           12333]
          Length = 872

 Score = 75.0 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            + + D A    G+ +L   G     DR+ +   +        +S          LT R+
Sbjct: 745 LAESDDPAIAGRGVTILDRLGARATADRVRQDLRVRGVGPVPRRSAPARATTALGLTPRQ 804

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E L  ++ G TS EIA  L +SR TV+N++A ++      +R  A+A   R+
Sbjct: 805 HEILGLVARGLTSPEIADCLYLSRRTVDNHVADVLAALGVPSRRDAVATFRRH 857


>gi|86604925|ref|YP_473688.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86553467|gb|ABC98425.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 198

 Score = 75.0 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 18/170 (10%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA-RIRIGLMLLFPK 150
           ++E +     ++      CPV   L + +  P G     C    ++   + + +M  F +
Sbjct: 32  VAEAETGSQAVEYCR--RCPVEVALLD-VRMPDGDGILACQQIVELGLPVVVVMMTTFQE 88

Query: 151 GRIILRDRLW----------EIGLLAAYQANMFKSYDVHW----GKDFELTGREVECLTW 196
             +I   R            +   LA     +  + +  W     +  +LT RE+  L  
Sbjct: 89  PGLIEAARRAGAKGYLSKETDPAELARVIRQILSNPERDWLPARQELPKLTPRELCVLQL 148

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EG  + +IA  LG+S  TV  Y ++  RK     R  A+  A +  I+
Sbjct: 149 MKEGLANKQIARRLGLSIETVKEYASAAYRKLDASDRVTALLKAQQLGIL 198


>gi|69249446|ref|ZP_00604982.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|257880327|ref|ZP_05659980.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257894240|ref|ZP_05673893.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260562369|ref|ZP_05832883.1| regulatory protein [Enterococcus faecium C68]
 gi|293553074|ref|ZP_06673716.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|293559445|ref|ZP_06675983.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|293568332|ref|ZP_06679655.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|294618821|ref|ZP_06698347.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|314937987|ref|ZP_07845298.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314941587|ref|ZP_07848471.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948427|ref|ZP_07851815.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314951384|ref|ZP_07854436.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314995348|ref|ZP_07860454.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194157|gb|EAN08690.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|257814555|gb|EEV43313.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257830619|gb|EEV57226.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260073293|gb|EEW61634.1| regulatory protein [Enterococcus faecium C68]
 gi|291588941|gb|EFF20766.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|291594944|gb|EFF26295.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|291602783|gb|EFF32993.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|291606600|gb|EFF35996.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|313590441|gb|EFR69286.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313596442|gb|EFR75287.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313599607|gb|EFR78450.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642662|gb|EFS07242.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313645152|gb|EFS09732.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 209

 Score = 75.0 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +   M     +        + RE+  +  ++ GK + EIA  L +S  TV NYI+ +
Sbjct: 129 IETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQL 188

Query: 225 MRKTATKTRSGAIAYAVRN 243
           + K   + R+    Y  ++
Sbjct: 189 LEKLDLRDRTQLAIYFYQH 207


>gi|325289007|ref|YP_004265188.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964408|gb|ADY55187.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 216

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 13/168 (7%)

Query: 86  LVRCMALSEKDKYYNVLQRPTEL--FCPVFHTLPENITPP-----AGMDNRYCSLTFDVA 138
           L+  + L E +    + +R TE+    P+       ITP          + + S T    
Sbjct: 49  LMFDLNLPEING-LELTRRVTEIDSNTPIIIYTGYEITPYFNILVEAQASGFISKTASRE 107

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           ++   +        +I    L ++      + ++      +  K      +E+  L  ++
Sbjct: 108 QLVTAIRCALRGETVIPVSLLRQL-----RRQDLQIKASGNNEKGVSFDEKELSILKEVA 162

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK++ EIA  L IS+  V   +  I  K   ++RS AI  A R  ++
Sbjct: 163 RGKSNKEIADYLLISQRVVEYNLTRIFGKLNVRSRSEAIFEARRLGVI 210


>gi|303327531|ref|ZP_07357972.1| DNA-binding response regulator, LuxR family [Desulfovibrio sp.
           3_1_syn3]
 gi|302862471|gb|EFL85404.1| DNA-binding response regulator, LuxR family [Desulfovibrio sp.
           3_1_syn3]
          Length = 226

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    +++GK+   IA  L IS  TV  +  +++ K    +    +  A+R+ +
Sbjct: 164 LSPREKEIFRLLADGKSVKSIAQDLCISPKTVETHKYNLLTKLQAGSVGDLVKIAIRHGL 223

Query: 246 V 246
           V
Sbjct: 224 V 224


>gi|304309918|ref|YP_003809516.1| Probable regulator, LuxR family [gamma proteobacterium HdN1]
 gi|301795651|emb|CBL43850.1| Probable regulator, LuxR family [gamma proteobacterium HdN1]
          Length = 226

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG--AIAYAVR 242
           LT R+ E L+ +  G ++ EI   LGIS  TV N+I  I  +    +R+   A+ +  +
Sbjct: 154 LTARQNEVLSLLKSGASTTEIGDRLGISLATVRNHIQGIFARLGVHSRTEMLAVLHGFK 212


>gi|326792258|ref|YP_004310079.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM
           5427]
 gi|326543022|gb|ADZ84881.1| two component transcriptional regulator, LuxR family [Clostridium
           lentocellum DSM 5427]
          Length = 207

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAVR 242
           LT REVE    I+EG ++ EI   L IS  TV N+I+ I+ KT  + R+  A+ Y  R
Sbjct: 150 LTEREVEVAAAIAEGLSNKEIGKKLFISDGTVRNHISVILSKTGLEHRTQIAVRYLTR 207


>gi|239906183|ref|YP_002952922.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239796047|dbj|BAH75036.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 220

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 12/217 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+I  D        +  L +      F +V      E  L ++V       LV  +++  
Sbjct: 5   RIILADDHTVLRTGLRLLIDN--QPDFTVVGEAADGEALL-ALVERVPAEVLVLDLSMPR 61

Query: 95  KDK---YYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                    +  R  E+   V   H         A     Y       + + + +  +  
Sbjct: 62  VSGLECIKELKSRGQEIKILVLTMHGREYVKEAMAAGALGYIEKQALDSELFVAIRTVAS 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             R +  D       +   Q                LT RE E L  +  G T  +IA +
Sbjct: 122 GRRYMSPDN----AEVLLDQLLSPTPQAASPDPYAVLTAREREVLKLLVRGHTLTQIAGL 177

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +S  T++ +   +M K     +S  + YA+R+ ++
Sbjct: 178 LHLSVKTIDTHKTHVMEKLNLTHKSQLVDYALRHGLL 214


>gi|238028111|ref|YP_002912342.1| putative DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237877305|gb|ACR29638.1| Putative DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 276

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 157 LSPRQAQIMRFVHMGNTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 209


>gi|170738965|ref|YP_001767620.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168193239|gb|ACA15186.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 221

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT ++V  L  +SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  + R  
Sbjct: 153 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIASSRIG 211


>gi|126464450|ref|YP_001045563.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126106261|gb|ABN78791.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 253

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 9/160 (5%)

Query: 89  CMALSEKDKYYNV-LQRPTELFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLML 146
            +   E   Y    + R       V     +  +    +D    S +   V    +   +
Sbjct: 88  RIDDEEMRSYLLGFIARVAPRRVVVLGEHDDAASLFEAIDCGAASYIPSSVGLEELVAAI 147

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            F   R +L  R   + L    +  M        G     T R+++    + +G  +  I
Sbjct: 148 RFSCPRSVLVPRKSIMAL----RHAMVVPGGEDRGLSRFFTDRQLDVARALLQGAANKTI 203

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +  +TV  +I +IMRK     R+ A   A R N +
Sbjct: 204 AHELNLCESTVKVHIRNIMRKLKATNRTQA---AFRLNQI 240


>gi|317495606|ref|ZP_07953974.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914420|gb|EFV35898.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 199

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA ++    +  +  +     L+ +E   L  +  G ++ EIA  L +S  T  NYI++I
Sbjct: 118 LAGHKEYSPELMENIFMNHNPLSKQETLLLKKVKHGLSNKEIAAELFLSEGTTRNYISNI 177

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   K R+ A+  A     +
Sbjct: 178 LTKLDCKNRTEAVKKATEKGWI 199


>gi|237713606|ref|ZP_04544087.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262406295|ref|ZP_06082844.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643037|ref|ZP_06720877.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294810061|ref|ZP_06768732.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298482810|ref|ZP_07000993.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
 gi|229446328|gb|EEO52119.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262354998|gb|EEZ04089.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641594|gb|EFF59772.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294442665|gb|EFG11461.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298271010|gb|EFI12588.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
          Length = 203

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 4/163 (2%)

Query: 87  VRCMALSEKDKYYN-VLQRPTELFC--PVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           V+ + L   +  ++ V  +  E+    P F    +       +  +   L   V      
Sbjct: 34  VQPIELLSVEALHDCVRTQCPEMLIVNPAFGDYFDVAKFREEISGKRIRLIALVTSFVDA 93

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            +L      I + D L  +    A   N+  S +        L+ RE E +  + +G T+
Sbjct: 94  SLLGKYDESISIFDDLETLSKKIAGLLNVV-SEEEGMDNQDTLSQREKEIVICVVKGMTN 152

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S +TV  +  +I +K    + +G   YA+ N +V
Sbjct: 153 KEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIVNKLV 195


>gi|262202270|ref|YP_003273478.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085617|gb|ACY21585.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 212

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 81/237 (34%), Gaps = 32/237 (13%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            +   T  V   P   D +AR + L   VS           +G +       DL +E   
Sbjct: 2   ANPLVTVVVDDHPFFRDGIARGLTLSGRVSV----------IGEAGDGRAALDLIREVTP 51

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-----VFHTLPENITPPAGMDNR 129
           D +   D+    +    ++       +  R   L        VF  L    +     D  
Sbjct: 52  D-VAVVDYQMPQMTGADVAHAVTRDGLSTRVLLLSAVTDAPIVFEALQRGASGYLSKDAD 110

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
             ++   V R+  G  ++ P+              LA    +  +++         L+ R
Sbjct: 111 RDTIVGAVLRVAKGDTVVPPE--------------LAGGLVDQIRAHTTTGSP--ALSER 154

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L   ++G++  ++A  L I  +TV  +   +  K     R+ A+A  +R  ++
Sbjct: 155 EHQVLVGFAQGRSIPQLAAELFIGASTVKTHTQRLYEKLGVSDRAAAVAEGIRRGLI 211


>gi|167587172|ref|ZP_02379560.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Burkholderia ubonensis Bu]
          Length = 83

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E   L  ++   ++ EIAV L +   TV  ++ ++  K    +R  A+  A+   +
Sbjct: 19  LTPKERAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 78

Query: 246 V 246
           +
Sbjct: 79  L 79


>gi|197123919|ref|YP_002135870.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220918688|ref|YP_002493992.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|196173768|gb|ACG74741.1| transcriptional regulator, LuxR family [Anaeromyxobacter sp. K]
 gi|219956542|gb|ACL66926.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 178

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 13/161 (8%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPA---GMDNRYCSLTFDVAR-------IRI 142
           S+        ++  E+    F    +    PA   G+ +   +    V R          
Sbjct: 21  SDAGGLLRADRQAEEMLKVFFADAADGALVPAELRGLTDGAQNGPPGVRRTLVMEGHGER 80

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
             + +   G+   +  LW   L    Q                LT RE E    +++G  
Sbjct: 81  LRIEVTAVGKGKTQLHLWREPLPEPLQVGPETPTATPAD---GLTQREREVALLVADGLR 137

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           S E+A  LGI+  TV +++ +I  K   + R       V++
Sbjct: 138 SREVAERLGIASQTVKSHLKTIFDKLGVRNRVELARRLVQH 178


>gi|84683417|ref|ZP_01011320.1| transcriptional regulator, LuxR family/sensory box protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84668160|gb|EAQ14627.1| transcriptional regulator, LuxR family/sensory box protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 204

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            LT RE E +  ++EG TS EIA  L IS  TV  + A + +K      + A+ +A+
Sbjct: 138 PLTRRETEVVNLLAEGMTSKEIARELEISPRTVEVHRAKLQKKFGVTN-TNALLHAM 193


>gi|113969929|ref|YP_733722.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|113884613|gb|ABI38665.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 220

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A
Sbjct: 146 DKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 237 IA 238
           + 
Sbjct: 206 VI 207


>gi|297571637|ref|YP_003697411.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931984|gb|ADH92792.1| two component transcriptional regulator, LuxR family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 207

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR--IGLMLLFPKGRIILRDRLW 160
           +R  ++ C V  +  ++      +D    +      R      ++     GR++L +R  
Sbjct: 67  ERVPQVKCIVLTSFDDDDALAEALDAGAKAYLLKSVRGAEITDVIRAVADGRVLLDER-- 124

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
                      + +    H     +LT  E + L  I +G ++ EI   LG++  TV N+
Sbjct: 125 ----------TVTRRRADHDDPTADLTPSERKVLELIGDGLSNREIGEKLGVAEKTVKNH 174

Query: 221 IASIMRKTATKTRSGAIAY 239
           I S++ K   + R+   A+
Sbjct: 175 ITSLLSKMGMQRRTQVAAW 193


>gi|311742184|ref|ZP_07715994.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311314677|gb|EFQ84584.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 219

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E   L  I +G T+ +IA  + ++  TV NY++ ++ K   + R+ A   A +N 
Sbjct: 159 LTPTERRILHLIGDGLTNRQIAEEIDLAEKTVKNYVSHLLNKLGLERRTQAAVLATKNR 217


>gi|237798495|ref|ZP_04586956.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021346|gb|EGI01403.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 81

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A  +               LT R+ + L  + +G T+ EIA  L  S +TV +++ +I+ 
Sbjct: 1   ALLSGELPEPRTIASTPLTLTSRQRQVLGLLCQGLTNKEIASQLWRSEHTVRSHVQAILT 60

Query: 227 KTATKTRSGAIAYAVRNNIV 246
                 R+ A   A R  +V
Sbjct: 61  ILQASCRTEAADTARRLGLV 80


>gi|296453988|ref|YP_003661131.1| LuxR family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183419|gb|ADH00301.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 217

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           I    G+  +   +  DVA +   L  +     ++  + L ++       A+   S D  
Sbjct: 92  IAQAMGLGAKGYLIKQDVAAVGPALQAVMAGQVVLGAEVLGKLTERTPNPADSDDSGDTA 151

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  L  RE E    ++EG  + +IA  L +S  TV N I++I+ K     R+    
Sbjct: 152 DSIEGLLGEREREITALVAEGLDNRDIAARLFLSEGTVRNRISAILDKLGLTNRTQLAI 210


>gi|126174706|ref|YP_001050855.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|153001005|ref|YP_001366686.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS185]
 gi|125997911|gb|ABN61986.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
 gi|151365623|gb|ABS08623.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
          Length = 220

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D    K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+
Sbjct: 144 AVDKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRT 203

Query: 235 GAIA 238
            A+ 
Sbjct: 204 QAVI 207


>gi|312891129|ref|ZP_07750652.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296437|gb|EFQ73583.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 213

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 83/243 (34%), Gaps = 33/243 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E +Q+NI +  +       V+ L +  D L  +                         +
Sbjct: 1   METEQINIAIVDDHTLFRRGVAALMSEFDELHVVFEASNGEQLQQ--------------M 46

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L +  L Q   +D     + P      M   +  K+        ++         + +  
Sbjct: 47  LAKAPLPQVILMDI----NMPV-----MDGYQATKWVRARYPEIKVLALSMFEDDKAVIE 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                     L     R  +  +    +  + + D L    LL +   +           
Sbjct: 98  MIKCGAGGYVLKESKPRDLLEAIKTIHQKGVYIND-LVSGKLLRSVTQH---------EP 147

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ++T +E+E L       T  EIA ++ +S  TV+NY  S+ +K   K+R+G + YA++
Sbjct: 148 VLDITKKEMEFLKLACSELTYKEIADLMFVSPRTVDNYRESLFQKLTIKSRTGLVLYAIQ 207

Query: 243 NNI 245
           N+I
Sbjct: 208 NDI 210


>gi|256823996|ref|YP_003147956.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687389|gb|ACV05191.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 201

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 35/70 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + +        L+ RE + L   ++G+   EIA  L +S  TV N+++S + KT  +T +
Sbjct: 130 AAESALAGPNPLSPRETDVLRLAADGQGVAEIAGALFLSPGTVRNHLSSAIGKTGARTSA 189

Query: 235 GAIAYAVRNN 244
           GA   A  N 
Sbjct: 190 GAATTARDNG 199


>gi|227820080|ref|YP_002824051.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227339079|gb|ACP23298.1| putative transcriptional regulator protein, LuxR family
           [Sinorhizobium fredii NGR234]
          Length = 259

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT RE++ L  +S G  +  IA    +S +TV  ++ +I+ K     R+ A A 
Sbjct: 186 DLTARELQILEMVSRGLQNKLIAAEFRLSEHTVKIHLHNIITKLGAHNRTEAAAR 240


>gi|298492499|ref|YP_003722676.1| LuxR family GAF modulated transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298234417|gb|ADI65553.1| GAF modulated transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 256

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 78/208 (37%), Gaps = 17/208 (8%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP 105
              M  + ++ G  H+ +   D   ++ L  I + D P     C+  +   +Y  V++R 
Sbjct: 58  QALMDTIGDHFGVQHWGISFLD---DELLTEIKTPDIPAV---CLEANPVGRY--VVERH 109

Query: 106 TELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
                 +  + PE+               +  D   +        P       + L ++ 
Sbjct: 110 APTHEQLILS-PEDWKNFCTRHEHIMTGPIVCDGRLVGTLNFARDPGSAPFNGNDLSDLS 168

Query: 164 LLAAYQANMF-----KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            L  + +        K   +    +  LT RE+E    +++G T+ EI   L I++N+V 
Sbjct: 169 ALCIHLSAKLATLRAKPKILSSAVNSLLTARELEIAELVAQGLTNGEIGAKLWITQNSVK 228

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  + RK     R+  +A  +++ ++
Sbjct: 229 QALKRMFRKLGVSARAEMVAK-LQDRLI 255


>gi|167918297|ref|ZP_02505388.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
          Length = 279

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 78  VSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +     FDL  V    +      + + Q                +   A  +     +  
Sbjct: 41  LIKQQSFDLIAVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVIS 100

Query: 136 DVAR-----IRIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELT 187
              R       + ++LL           L E    A     +A + +           L+
Sbjct: 101 RTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLS 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 161 PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|163803952|ref|ZP_02197780.1| transcriptional regulator, LuxR family protein [Vibrio sp. AND4]
 gi|159172239|gb|EDP57142.1| transcriptional regulator, LuxR family protein [Vibrio sp. AND4]
          Length = 208

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 11/110 (10%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L       +++  D  +  GLL   QA      +    K   LT 
Sbjct: 101 GFIPKSSDMRELINAL------NQVLNGDPYFPEGLLTNDQA-----CNDLAEKVAALTP 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 150 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTHAVI 199


>gi|157146847|ref|YP_001454166.1| transcriptional regulator FimZ [Citrobacter koseri ATCC BAA-895]
 gi|157084052|gb|ABV13730.1| hypothetical protein CKO_02622 [Citrobacter koseri ATCC BAA-895]
          Length = 210

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 16/172 (9%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    +     ++ +  AG       N + S  
Sbjct: 48  YPVDLVILDIELPGTDGFTLLKRIKSIQENTKILFLSSKSESFYAGRAIRAGANGFVSKR 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+  I   + ++         + L  I   ++ +             D  L+ REV  L
Sbjct: 108 KDLNDIYNAVKMILSGYSFFPSETLNFISNTSSRKGEH---------NDMPLSNREVTVL 158

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++ G ++ EIA  L +S  T++ + A+I  K    T    I YA  ++++
Sbjct: 159 RYLANGLSNKEIAEQLLLSNKTISAHKANIFSKLGLHTIVELIDYAKVHDLL 210


>gi|308447116|ref|XP_003087338.1| hypothetical protein CRE_08625 [Caenorhabditis remanei]
 gi|308257188|gb|EFP01141.1| hypothetical protein CRE_08625 [Caenorhabditis remanei]
          Length = 217

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 12/162 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ-RPTELFCPVF----HTLPENITPPAG-MDNRYCSLTFD 136
           P  ++  + L     +  ++  R      P+     H     I          Y   +  
Sbjct: 48  PDLVLLDLNLPGASGFSALVHVRAQYPALPIIVVSAHEDASIIQRAIAHGAMGYIPKSAH 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195
            + I   +  +   G I L   L      A    +   + +    +  + LT ++   L 
Sbjct: 108 PSHIGEAIRQVL-DGDIWLPPNLPA----ANMNFDPRAADETALAERIQSLTPQQFRVLM 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 163 MVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 204


>gi|304439828|ref|ZP_07399722.1| possible response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371567|gb|EFM25179.1| possible response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 196

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  + +G+   +IA  L IS  T+ N+I++I  K   K    A   A+    
Sbjct: 132 LTEREVEVLREMIKGENKKDIAKKLYISERTLYNHISNIYEKLGAKNIVEAYNRAMELGY 191

Query: 246 V 246
           +
Sbjct: 192 I 192


>gi|296394121|ref|YP_003659005.1| LuxR family two component transcriptional regulator [Segniliparus
           rotundus DSM 44985]
 gi|296181268|gb|ADG98174.1| two component transcriptional regulator, LuxR family [Segniliparus
           rotundus DSM 44985]
          Length = 213

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A       ++     G    LT +E   L  I EG T+ +IA  + ++  TV NY++ ++
Sbjct: 127 AEALIRQLRAGKPEPGPLAGLTEQERVLLDLIGEGLTNRQIAQRMFLAEKTVRNYVSRLL 186

Query: 226 RKTATKTRSGAIAYAVRNN 244
            K   + R+ A   AV   
Sbjct: 187 GKLGVERRTQAAVIAVSGG 205


>gi|269928442|ref|YP_003320763.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787799|gb|ACZ39941.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus
           DSM 20745]
          Length = 799

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E    ++ GKT+ EIA  L I   TV  ++++ + K   ++R+   A+
Sbjct: 730 LTRREYEVALHVALGKTNREIAADLSIGEKTVEMHVSNCLTKLGLRSRAQLAAW 783


>gi|256378000|ref|YP_003101660.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922303|gb|ACU37814.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 250

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 6/152 (3%)

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG---LMLLFPKGRII 154
             + L+R  +        L   +      D    +L   + R   G   L++L  + R  
Sbjct: 101 TEDELRRAVDAVLGSLPGLVLLLDDVHLADRPSLALLEHLVRRGAGSPLLVVLAHEPRSC 160

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                    LL A +     +          LT RE   L  ++EG T+D IA  L IS 
Sbjct: 161 PPP---LAALLVAAERESLATVLRLPVDGHRLTQRERTVLVVLAEGLTADAIARRLDISP 217

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV+ ++  + RK  T  R   +  A    ++
Sbjct: 218 RTVHRHLQHLYRKLGTTDRLATVLRAQELGLL 249


>gi|207724571|ref|YP_002254968.1| transcription regulator prhj protein [Ralstonia solanacearum MolK2]
 gi|206589793|emb|CAQ36754.1| transcription regulator prhj protein [Ralstonia solanacearum MolK2]
          Length = 175

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L A +       D    +   LT R+ + L   + GK++ EIA  L IS  TV +++  I
Sbjct: 88  LEARRHGCEPRPDT-GARLSALTPRQHDILREAAHGKSNVEIAQTLHISVETVKSHVRQI 146

Query: 225 MRKTATKTRSGAIA 238
           + +   + R+   A
Sbjct: 147 LMRLEARNRTELAA 160


>gi|218780693|ref|YP_002432011.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762077|gb|ACL04543.1| transcriptional regulator, LuxR family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 370

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L        +  D        L+ RE E L+++  G ++ +IA  + I+  TV  ++ +
Sbjct: 281 VLVLLLKPHGRKEDFAVLAKDGLSPREQEVLSYLPLGYSNLQIARAMNIAEVTVKKHLKN 340

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
             RK     R+  +  A+R  
Sbjct: 341 ASRKLGACGRTETLFNAMRRK 361


>gi|50086430|ref|YP_047940.1| putative two-component response regulator [Acinetobacter sp. ADP1]
 gi|49532406|emb|CAG70118.1| putative two-component response regulator [Acinetobacter sp. ADP1]
          Length = 216

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 13/162 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQ-RPTELFCPVF----HTLPENITPPAG-MDNRYCSLTFD 136
           P  ++  + L     +  ++  R      P+     H     I          Y   +  
Sbjct: 48  PDLVMLDLNLPGASGFSALVHVRAQYPSLPIIVVSAHEEVSVIQRAIAHGAMGYIPKSAH 107

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195
            + I   +  +      +  +      L      +   S +    +  + LT ++   L 
Sbjct: 108 PSHIGEAIRHVLEGEIWLPPN------LPNNLSFDPRASDETELAERIQSLTPQQFRVLM 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 162 MVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|327468268|gb|EGF13753.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 199

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLAGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLDAENRTEAVRIGQEKG 197


>gi|271966300|ref|YP_003340496.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509475|gb|ACZ87753.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 172

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ LT +++G ++ + A  L IS  ++  ++  I  K   + R+ A+  A R  +
Sbjct: 111 LTDREMQVLTLVADGASNRQAAAKLFISEASIKTHLLHIYDKLDVRYRAAAVGEAYRRGL 170

Query: 246 V 246
           +
Sbjct: 171 L 171


>gi|218672306|ref|ZP_03521975.1| hypothetical protein RetlG_12042 [Rhizobium etli GR56]
          Length = 109

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           L   Y +   ++ D  +      LT  E+ CL    +G TS+EIA        T+N+Y+ 
Sbjct: 25  LFRTYASGDHQTADGPFAAGALPLTSGELRCLELAGKGLTSEEIADASDYRTETINSYLK 84

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S  +K     R+ AIA A+R  ++
Sbjct: 85  SATKKLGAANRAHAIAEAIRRQLI 108


>gi|126725039|ref|ZP_01740882.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2150]
 gi|126706203|gb|EBA05293.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2150]
          Length = 226

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 21/181 (11%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE----------NITPPAGMDNRYCSLT 134
           +  +       ++   V+    + F PV     +                G+ N+  S+ 
Sbjct: 46  EWTQHYVEQNYERIDPVVLGCFQSFQPVTWKELDWSSKGSRRFLGEALDNGVGNQGLSVP 105

Query: 135 FDVARIRIGLMLLF-----PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185
                 +  L  +              +   ++ L+A Y  N  K+ ++  GK       
Sbjct: 106 IRGPAGQFALFTVNDNCKDGCWAKFTAEHHRQMILIAHYLNN--KALEIEHGKLMSPVKA 163

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + LT ++ G +    A  L IS +T+  YI +   K  +   + A+A A+   +
Sbjct: 164 LSPRESDSLTLLAMGYSRAHAADTLKISEHTLRVYIEAARFKLGSANTTHAVAAALSRGL 223

Query: 246 V 246
           +
Sbjct: 224 I 224


>gi|317482242|ref|ZP_07941263.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916258|gb|EFV37659.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 217

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           I    G+  +   +  DVA     L  +     ++  + L ++       A+   S D  
Sbjct: 92  IAQAMGLGAKGYLIKQDVAAAGPALQAVMAGQVVLGAEVLGKLTERTPDPADSDDSRDTA 151

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  L  RE E    ++EG  + +IA  L +S  TV N I++I+ K     R+    
Sbjct: 152 DSIEGLLGEREREITALVAEGLDNRDIAARLFLSEGTVRNRISAILDKLGLTNRTQLAI 210


>gi|291456635|ref|ZP_06596025.1| DNA-binding response regulator [Bifidobacterium breve DSM 20213]
 gi|291381912|gb|EFE89430.1| DNA-binding response regulator [Bifidobacterium breve DSM 20213]
          Length = 217

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           I    G+  +   +  DVA +   L  +     ++  + L ++       A+   S D  
Sbjct: 92  IAQAMGLGAKGYLIKQDVATVGPALQAVMAGQVVLGAEVLGKLTERTPNPADSDDSRDTA 151

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  L  RE E    ++EG  + +IA  L +S  TV N I++I+ K     R+    
Sbjct: 152 DSIEGLLGEREREITALVAEGLDNRDIAARLFLSEGTVRNRISAILDKLGLTNRTQLAI 210


>gi|163802887|ref|ZP_02196775.1| excinuclease ABC subunit A [Vibrio sp. AND4]
 gi|159173294|gb|EDP58120.1| excinuclease ABC subunit A [Vibrio sp. AND4]
          Length = 214

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 38/60 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G ++ ++A  L +S +T+ ++++ I +K + K R  AIA+A +N
Sbjct: 152 VDLTIRELQVLRCLQAGTSNIQMAEDLYVSESTIKSHLSQIFKKISVKNRVQAIAWADQN 211


>gi|170723751|ref|YP_001751439.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169761754|gb|ACA75070.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 258

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGK------DFELTGREVECLTWISEGKTSDEIAVIL 210
           D L++    A  Q    ++ DV  G+        +L+ R++E    +S+GKT+ +IA  L
Sbjct: 155 DELYQDLEKARGQGVHRRASDVEEGESDLPAAFEKLSPRQLEVARLVSKGKTNYQIACEL 214

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAI 237
           GI+ NTV  Y++ ++R T    R+   
Sbjct: 215 GITENTVKLYVSQVLRLTHMHNRTQLA 241


>gi|148550964|ref|YP_001260394.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
 gi|148503375|gb|ABQ71627.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 289

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 79/241 (32%), Gaps = 22/241 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
            S L   +   A              + A+    G   F LV     +     +++ + +
Sbjct: 44  ASRLGDITAFEAECRQATTLDQVKSLLDAIVRQFGFRWFALVHNVDLKRTTCKALLITTY 103

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P   +  +  S       V     +    V     + I      + R  S+        +
Sbjct: 104 PVRWIEEIMESRLYLEDPVHAACVKT---VSGLSWDQIGDYIAPNARQLSILERGRAHGL 160

Query: 143 GLMLLFPKGRIILRDRL-------------------WEIGLLAAYQANMFKSYDVHWGKD 183
                 P       D +                     IG +A  QA      D      
Sbjct: 161 ASGFTMPIRMRDEPDAMFTVARQGDETISSPDLLCARLIGTVAFDQARTLLGPDELANVP 220

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ R+++C+  +++GK+  EI  ILG+SR+TV+ Y+    R+   + R+  +  AVR+
Sbjct: 221 IALSPRQIDCIDLVAQGKSDWEIGQILGLSRDTVHEYVEGARRRYGVRRRTQLVLRAVRD 280

Query: 244 N 244
            
Sbjct: 281 G 281


>gi|6797728|gb|AAA87562.2| response regulator protein CorR [Pseudomonas syringae pv. glycinea]
          Length = 197

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  + A  +               LT R+ + L  +  G T+ EIA+ L  S +TV +++
Sbjct: 112 LQRIQALLSGEPPEPRTIAATPLPLTSRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHV 171

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I+    T  R+ A   A R  +V
Sbjct: 172 QAILTILQTSCRTEAADAARRLGLV 196


>gi|330976162|gb|EGH76228.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
 gi|330982505|gb|EGH80608.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 220

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 3/140 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +        P+ I     +  +   L    A      +         L   + ++ +  A
Sbjct: 79  VLILSAQNDPDMIMRTLDIGAQGYLLKDTTAAELEQALEALRGNERYLSPAIAQMVIECA 138

Query: 168 YQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +     S      K+ F LT R++E L  I  GK++ EIA  LG+S  T+  + A +M+
Sbjct: 139 LRG--TPSDRAQAAKERFRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMK 196

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +      +G + + VR  I+
Sbjct: 197 RLQIFDVAGLVLFCVRERII 216


>gi|328883875|emb|CCA57114.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 204

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            + +   RL EI L               D     D  LT RE E L + ++G    EIA
Sbjct: 106 PKTVSAQRLAEIILTVHAGNRYVDPELAADAIAAGDSPLTAREAEVLEFSADGAPVAEIA 165

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
               +S  TV NY++S   K   + R  A+  A    
Sbjct: 166 RRASLSPGTVRNYLSSAAAKLGAENRHAAVRLAQAKG 202


>gi|316934925|ref|YP_004109907.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315602639|gb|ADU45174.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           DX-1]
          Length = 246

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 36/59 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT  ++E L +++ GK++ +IA    +S  TV + +A I++K     R+ A  +A+RN
Sbjct: 178 ELTPSQLELLPYLASGKSNRQIAKERDMSVFTVKSQVAGIIQKLNVANRTQAALFAMRN 236


>gi|258655289|ref|YP_003204445.1| LuxR family ATP-dependent transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558514|gb|ACV81456.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Nakamurella multipartita DSM 44233]
          Length = 884

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 69/238 (28%), Gaps = 33/238 (13%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWD---------LFQEQKLDSIVSSDWPFDLV 87
             L  T    +RM    +  GA   +                 ++   ++    W   L 
Sbjct: 652 AGLARTPGTPIRMRCWADVAGAQTLIAAGLPQEAIERLGEPADDRGFSAVWQRAW---LA 708

Query: 88  RCMALSEKDKYYNVLQRPT-----ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           R             L RP      +   PV                   +LT   A + +
Sbjct: 709 RAHLELGALHRVEELVRPVIEPGWQYREPVILARLLLAIAAEKQHRDGLALTHFTAAVEL 768

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQ--------------ANMFKSYDVHWGKDFELTG 188
                  +  + L  RL   G L  YQ                         G+   LT 
Sbjct: 769 AQPEGIRRPFLQLASRL--AGPLHRYQVLDGPNTAFVVECIGAAPADAHSPAGQVEHLTE 826

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L ++     + EIA  L +S NTV  ++ S+ RK     R  A+  A    ++
Sbjct: 827 RELIVLKYLPTMLKAGEIADDLFVSVNTVKAHLRSMYRKLGVSNRREAVERARSQGLL 884


>gi|157368863|ref|YP_001476852.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320627|gb|ABV39724.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 215

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           + R RL  +  L            +  G+   LT +E E +  + EG ++  IA+ LGIS
Sbjct: 128 LERGRLRAVMPLIELATRDL----LPEGEAQLLTAKEQEIVNMVREGASNKRIALKLGIS 183

Query: 214 RNTVNNYIASIMRKTATKTRSGAIA 238
            +TV  ++ +I  KT    R+  +A
Sbjct: 184 LSTVKTHMRNIFAKTEVVNRTELVA 208


>gi|88855530|ref|ZP_01130194.1| two-component response regulator [marine actinobacterium PHSC20C1]
 gi|88815437|gb|EAR25295.1| two-component response regulator [marine actinobacterium PHSC20C1]
          Length = 226

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G++  LT RE E L  I++G ++ EIA    +S N++  +I S  R     +R+ A+ +
Sbjct: 138 PGREEGLTEREAEILALITQGLSNLEIAERTNLSINSIKTHIRSGYRSIGVSSRTNAVLW 197

Query: 240 AVRNN 244
            + + 
Sbjct: 198 GIEHG 202


>gi|255323701|ref|ZP_05364829.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
 gi|255299191|gb|EET78480.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
          Length = 217

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 2/166 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  + +       +    +    F T    +         +   T 
Sbjct: 51  DVVLMDIRMPVMDGIEATAQLHSLAGARDIPVVMLTAFDTDEFILHALRAGAVGFLLKTT 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +       + +    L  +  LAA      +      G   EL+ RE E   
Sbjct: 111 APEALVASVRAAAQGQQQLSPKVLENLVGLAATPPQPEQEMIQPSGL-AELSERENEIAQ 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +++G ++ EIA  L IS  TV  ++  I+ K     R   IA AV
Sbjct: 170 LVAQGLSNAEIAEQLFISLTTVKTHMKHILAKIDGTNRVH-IAIAV 214


>gi|167902027|ref|ZP_02489232.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
          Length = 279

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 78  VSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +     FDL  V    +      + + Q                +   A  +     +  
Sbjct: 41  LIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVIS 100

Query: 136 DVAR-----IRIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELT 187
              R       + ++LL           L E    A     +A + +           L+
Sbjct: 101 RTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDSRVEAIVSQLPRRKRSPCSLLS 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 161 PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|160875718|ref|YP_001555034.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|160861240|gb|ABX49774.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315267907|gb|ADT94760.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 220

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D    K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+
Sbjct: 144 AVDKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRT 203

Query: 235 GAIA 238
            A+ 
Sbjct: 204 QAVI 207


>gi|85713863|ref|ZP_01044852.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
 gi|85698989|gb|EAQ36857.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
          Length = 216

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 17/174 (9%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                    V S  P  ++  + L  +  ++ + +              E I  P  + +
Sbjct: 41  GDGASFLEAVRSAPPACIILDLHLPGESGFHVLRR-----------LADEKIVSPILVIS 89

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
               +   VA ++ G +      +    D + +    A       +  +     +F    
Sbjct: 90  GAADIAMAVAVMKYGALDFL--EKPFSSDAIIDRVRAAVKMWRETRGSESDGLANFPGRH 147

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT RE E L+ ++ G ++ E+   LGIS  TV  + A IM K   K  +  I 
Sbjct: 148 LLTCREREVLSQVARGASNKEVGRKLGISPRTVEVHRARIMDKLGAKNTADLIR 201


>gi|186687174|ref|YP_001870317.1| two component LuxR family transcriptional regulator [Nostoc
           punctiforme PCC 73102]
 gi|186469477|gb|ACC85276.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 210

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+  L  + +G+ + EIA  L +S  TV NY+  I+ K   + R  A  ++ +N
Sbjct: 151 LSKREIGVLKLVGQGRNNQEIAQELHLSEGTVKNYVTQILNKLEMRDRIQAALWSQQN 208


>gi|257789900|ref|YP_003180506.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|317489358|ref|ZP_07947871.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|257473797|gb|ACV54117.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|316911529|gb|EFV33125.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 492

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 38/96 (39%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           I L+ +    +   R++            + F +          LT RE E L  ++ G+
Sbjct: 392 IVLLFMLRIRKRSEREQRPAASGEPVRGEDAFDAKGTEVTVRHGLTDRESEILLLLARGR 451

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +S  I   L +S NTV  +I +I  K    ++   I
Sbjct: 452 SSTYIGEALYLSPNTVRGHIKNIYAKLGVHSKQEII 487


>gi|226309444|ref|YP_002769406.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226188563|dbj|BAH36667.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 204

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 71  EQKLDSIVS--SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           E   D++++     P   V  + ++  D          E    +  T+   ++       
Sbjct: 37  ESGEDAVIAAAKHQPHVAVLDLQMAGIDG--------IETAQQIAQTVSGCVSIIVTSHG 88

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
           R   L   ++    G +         L + +  +     Y      +  +  G D  LT 
Sbjct: 89  RPGYLKKALSAGVRGFLP-KTTPAATLAEVVRSVHAGGRYVDPSLAAEAIGAG-DSPLTP 146

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L + ++G + ++IA    +S  T  NY++S + K     R  A   A R   +
Sbjct: 147 READVLEYAADGASIEQIASRAHLSAGTTRNYLSSAVTKLGAANRHEAAVIARRQGWI 204


>gi|19553757|ref|NP_601759.1| regulatory-like protein [Corynebacterium glutamicum ATCC 13032]
 gi|62391399|ref|YP_226801.1| LuxR family regulatory protein [Corynebacterium glutamicum ATCC
           13032]
 gi|145296555|ref|YP_001139376.1| hypothetical protein cgR_2464 [Corynebacterium glutamicum R]
 gi|21325332|dbj|BAB99953.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
 gi|41326740|emb|CAF21222.1| Bacterial regulatory protein, LuxR family [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846475|dbj|BAF55474.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 281

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   +  +L+ RE++ L  ++ G T+ E A  +GI   TV +Y+ S+MRK    TR  A+
Sbjct: 212 VRIKQTTKLSARELDVLACVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAV 271

Query: 238 AYAVRNN 244
             A R  
Sbjct: 272 NAARRIG 278


>gi|318042426|ref|ZP_07974382.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 253

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE E L  +++GK + EIA  L I+  T  +Y++SI+ K     R+ A A+A+ + 
Sbjct: 190 DLNQREREILPLLAKGKKNREIAAELFIAETTTRDYVSSILSKLQVSNRAAAAAWAIEHG 249

Query: 245 IV 246
            V
Sbjct: 250 FV 251


>gi|317481525|ref|ZP_07940584.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|316902311|gb|EFV24206.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 99

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             D +L+ RE E L  I +G  S EIA  LG+S  TVNN+  +I+ K        AI
Sbjct: 35  SPDKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNHRKNILSKLNANNIMEAI 91


>gi|311900106|dbj|BAJ32514.1| putative LuxR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 244

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 2/109 (1%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R+R  +         +  D L +  L+                 D+ +  REV+ L  +
Sbjct: 138 ERLRQAVRTAARGHGDLPPDLLGK--LIGCMGRQRTGDTPETGPADYGMLPREVDVLRLV 195

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  + EIAV L  S  T+ N I ++  +   + R+ A+AYA+R   +
Sbjct: 196 ADGMDTGEIAVKLLYSERTIKNIIHTVTTRFQLRNRAHAVAYALREGYI 244


>gi|300174919|dbj|BAJ10692.1| hypothetical bacteriocin immunity protein [Streptococcus
           thermophilus]
          Length = 117

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L ++ EG    EIA  L IS  T+ N+I +I+ K    +   AI  A +  
Sbjct: 55  ELTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLEVDSTIRAIIKARKMG 114

Query: 245 IV 246
            +
Sbjct: 115 YI 116


>gi|238059474|ref|ZP_04604183.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881285|gb|EEP70113.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 204

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   +EG    EIA  L ++  TV N++++IM KT  + R  A+  A    
Sbjct: 143 PLTRREREVLREAAEGVPLKEIARRLFLAHGTVRNHLSAIMHKTGARNRMEAVRLAQHEG 202


>gi|312885328|ref|ZP_07744994.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311302193|gb|EFQ79196.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 251

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I +GK S EIA +L IS NTVN +  +I+ K        A   A    +
Sbjct: 191 LSTRECEVLRLIDQGKLSKEIADLLSISINTVNRHRQNILEKLNVDHAIEACRVARAMGL 250

Query: 246 V 246
           +
Sbjct: 251 L 251


>gi|289627821|ref|ZP_06460775.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 198

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +R   +   + R  +           +L+        + A  +               LT
Sbjct: 86  DRDAIVREAIQRGAVEFHSKAECPEHLLQ-------RIQALLSGEPPEPRTIAATPLPLT 138

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ + L  +  G T+ EIA+ L  S +TV +++ +I+    T  R+ A   A R  +V
Sbjct: 139 SRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHVQAILTILQTSCRTEAADAARRLGLV 197


>gi|226953416|ref|ZP_03823880.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
 gi|226835847|gb|EEH68230.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
          Length = 217

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 152 LTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|160900754|ref|YP_001566336.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160366338|gb|ABX37951.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 220

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 13/166 (7%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V +D        + L+   +    L R   +     H  PE +     +  R   L  
Sbjct: 52  DLVVTDIRMPGASGIDLAALFRDQFPLVR---VLVLSMHEDPEYVRRAVALGARGYVLKD 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A+  I  +     G +     L  +           +      G    LT RE   L 
Sbjct: 109 APAQQLIEAIDRVYAGGLYFSPGLQPVA----------EEDGSASGPRRALTPREASVLQ 158

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           WISEG+++ EIA ++G S  TV  +   + RK      +  I YAV
Sbjct: 159 WISEGRSNKEIAALMGTSVRTVETHRLHLRRKLRIDGHAAFIKYAV 204


>gi|53718880|ref|YP_107866.1| putative transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52209294|emb|CAH35239.1| putative transcriptional regulator [Burkholderia pseudomallei
           K96243]
          Length = 302

 Score = 75.0 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELTGREVECLTWI 197
            + ++LL           L E    A     +A + +           L+ R+ + + ++
Sbjct: 134 ALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQAQIMRFV 193

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 194 HMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 234


>gi|325067020|ref|ZP_08125693.1| NarL family two-component response regulator [Actinomyces oris K20]
          Length = 199

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 16/174 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +     P  ++  + +   D      ++L+R       +  T          + +    
Sbjct: 37  PVALEHRPDVVLMDVDMPGTDGLSATASLLERLPATRVLIVTTFGRPGFLRRAIQSGA-- 94

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                      ++   P   +    R    GL          +  + +G D  LT RE E
Sbjct: 95  --------HGFVVKDAPATELAESVRRVHAGL--RVVDPALAADSLIFG-DSPLTARETE 143

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L   ++G T  E+A  + +S  T  N+++  M KT   TR+ A+  A +   +
Sbjct: 144 VLQAAADGATVSEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQKGWI 197


>gi|322378102|ref|ZP_08052588.1| transcriptional regulatory protein DegU [Streptococcus sp. M334]
 gi|321280939|gb|EFX57953.1| transcriptional regulatory protein DegU [Streptococcus sp. M334]
          Length = 198

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + I  + L +  LL  YQ     S +V       LT RE+E L  +  G T D+I   +
Sbjct: 104 DKSIGPEELLQN-LLRIYQGGKIFSDEVVVDV---LTSREIEMLELVRNGLTIDDICEKV 159

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +S+ TV+N++A+I  K    +R  AI  A +  
Sbjct: 160 YVSKRTVSNHLANIFSKLGVSSRQEAIHVAEQLG 193


>gi|315166918|gb|EFU10935.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1341]
          Length = 281

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 212 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|315151567|gb|EFT95583.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0012]
          Length = 281

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 212 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|315145234|gb|EFT89250.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2141]
 gi|315161933|gb|EFU05950.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0645]
          Length = 281

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 212 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|312904250|ref|ZP_07763412.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0635]
 gi|310632346|gb|EFQ15629.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0635]
 gi|315578796|gb|EFU90987.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0630]
          Length = 281

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 212 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|307269785|ref|ZP_07551115.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX4248]
 gi|306513895|gb|EFM82497.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX4248]
 gi|315025770|gb|EFT37702.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2137]
 gi|315036110|gb|EFT48042.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0027]
 gi|329576889|gb|EGG58374.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1467]
          Length = 281

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 212 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|293385055|ref|ZP_06630889.1| transcriptional regulator, LuxR family [Enterococcus faecalis R712]
 gi|293389326|ref|ZP_06633787.1| transcriptional regulator, LuxR family [Enterococcus faecalis S613]
 gi|312906044|ref|ZP_07765057.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO
           512]
 gi|312909390|ref|ZP_07768246.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO
           516]
 gi|291077733|gb|EFE15097.1| transcriptional regulator, LuxR family [Enterococcus faecalis R712]
 gi|291081348|gb|EFE18311.1| transcriptional regulator, LuxR family [Enterococcus faecalis S613]
 gi|310628039|gb|EFQ11322.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO
           512]
 gi|311290414|gb|EFQ68970.1| transcriptional regulator, LuxR family [Enterococcus faecalis DAPTO
           516]
          Length = 281

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 212 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|257083658|ref|ZP_05578019.1| two-component system regulator [Enterococcus faecalis Fly1]
 gi|256991688|gb|EEU78990.1| two-component system regulator [Enterococcus faecalis Fly1]
          Length = 321

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 252 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|257080996|ref|ZP_05575357.1| two-component system regulator [Enterococcus faecalis E1Sol]
 gi|256989026|gb|EEU76328.1| two-component system regulator [Enterococcus faecalis E1Sol]
          Length = 321

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 252 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|256959865|ref|ZP_05564036.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|256950361|gb|EEU66993.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
          Length = 321

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 252 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|256957400|ref|ZP_05561571.1| two-component system regulator [Enterococcus faecalis DS5]
 gi|257077604|ref|ZP_05571965.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257086090|ref|ZP_05580451.1| two-component system regulator [Enterococcus faecalis D6]
 gi|294779936|ref|ZP_06745317.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           PC1.1]
 gi|256947896|gb|EEU64528.1| two-component system regulator [Enterococcus faecalis DS5]
 gi|256985634|gb|EEU72936.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|256994120|gb|EEU81422.1| two-component system regulator [Enterococcus faecalis D6]
 gi|294452985|gb|EFG21406.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           PC1.1]
          Length = 321

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 252 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|256617617|ref|ZP_05474463.1| two-component system regulator [Enterococcus faecalis ATCC 4200]
 gi|257089157|ref|ZP_05583518.1| predicted protein [Enterococcus faecalis CH188]
 gi|256597144|gb|EEU16320.1| two-component system regulator [Enterococcus faecalis ATCC 4200]
 gi|256997969|gb|EEU84489.1| predicted protein [Enterococcus faecalis CH188]
          Length = 321

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 252 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|255971190|ref|ZP_05421776.1| predicted protein [Enterococcus faecalis T1]
 gi|255962208|gb|EET94684.1| predicted protein [Enterococcus faecalis T1]
          Length = 321

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 252 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|300862032|ref|ZP_07108112.1| transcriptional regulator, LuxR family [Enterococcus faecalis TUSoD
           Ef11]
 gi|300848557|gb|EFK76314.1| transcriptional regulator, LuxR family [Enterococcus faecalis TUSoD
           Ef11]
          Length = 321

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 252 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|227554847|ref|ZP_03984894.1| LuxR family transcriptional regulator [Enterococcus faecalis HH22]
 gi|229546568|ref|ZP_04435293.1| LuxR family transcriptional regulator [Enterococcus faecalis
           TX1322]
 gi|229548677|ref|ZP_04437402.1| LuxR family transcriptional regulator [Enterococcus faecalis ATCC
           29200]
 gi|255973814|ref|ZP_05424400.1| two-component system regulator [Enterococcus faecalis T2]
 gi|256761500|ref|ZP_05502080.1| two-component system regulator [Enterococcus faecalis T3]
 gi|256854402|ref|ZP_05559766.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256964432|ref|ZP_05568603.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257415300|ref|ZP_05592294.1| two-component system regulator [Enterococcus faecalis AR01/DG]
 gi|257418341|ref|ZP_05595335.1| predicted protein [Enterococcus faecalis T11]
 gi|257420990|ref|ZP_05597980.1| LuxR family transcriptional regulator [Enterococcus faecalis X98]
 gi|227176016|gb|EEI56988.1| LuxR family transcriptional regulator [Enterococcus faecalis HH22]
 gi|229306193|gb|EEN72189.1| LuxR family transcriptional regulator [Enterococcus faecalis ATCC
           29200]
 gi|229308313|gb|EEN74300.1| LuxR family transcriptional regulator [Enterococcus faecalis
           TX1322]
 gi|255966686|gb|EET97308.1| two-component system regulator [Enterococcus faecalis T2]
 gi|256682751|gb|EEU22446.1| two-component system regulator [Enterococcus faecalis T3]
 gi|256709962|gb|EEU25006.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256954928|gb|EEU71560.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257157128|gb|EEU87088.1| two-component system regulator [Enterococcus faecalis ARO1/DG]
 gi|257160169|gb|EEU90129.1| predicted protein [Enterococcus faecalis T11]
 gi|257162814|gb|EEU92774.1| LuxR family transcriptional regulator [Enterococcus faecalis X98]
 gi|323479927|gb|ADX79366.1| Transcriptional regulator, LuxR family [Enterococcus faecalis 62]
 gi|327534321|gb|AEA93155.1| LuxR family transcriptional regulator [Enterococcus faecalis OG1RF]
          Length = 321

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 252 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|227517697|ref|ZP_03947746.1| LuxR family transcriptional regulator [Enterococcus faecalis
           TX0104]
 gi|227074852|gb|EEI12815.1| LuxR family transcriptional regulator [Enterococcus faecalis
           TX0104]
          Length = 321

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 252 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 303


>gi|297199299|ref|ZP_06916696.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717164|gb|EDY61198.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 210

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE + L   ++G T  +IA  L +S +TV NY++S + KT T+ R  A+  A +  
Sbjct: 149 PLTGRECDVLRASTDGATVADIADRLHLSESTVRNYLSSAIGKTGTRNRMEAVRAARQQG 208


>gi|126643311|ref|YP_001086295.1| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
          Length = 175

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 147 LFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSD 204
           +    R +L   +W    L +    +   + +    +  + LT ++   L  ++EG  + 
Sbjct: 70  IGEAIRQVLDGEIWLPPNLPSNINLDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNK 129

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 130 QIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 162


>gi|70730988|ref|YP_260729.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345287|gb|AAY92893.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           Pf-5]
          Length = 240

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             Q ++ + ++ H      L  RE++ L + ++G +S +IA+ + +S+++++ +IA I++
Sbjct: 164 NRQHSLQRIFNDH---QQALNDREIDILRYTADGMSSTDIAMRMHLSKSSIDYHIAKILQ 220

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K  +  +  A+A A++   +
Sbjct: 221 KLDSPNKHQALALAIKKGKI 240


>gi|29375326|ref|NP_814480.1| LuxR family transcriptional regulator [Enterococcus faecalis V583]
 gi|307272545|ref|ZP_07553798.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0855]
 gi|307274680|ref|ZP_07555852.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2134]
 gi|307284507|ref|ZP_07564669.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0860]
 gi|307289576|ref|ZP_07569520.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0109]
 gi|307296378|ref|ZP_07576203.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0411]
 gi|312900327|ref|ZP_07759638.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0470]
 gi|312953116|ref|ZP_07771965.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0102]
 gi|29342786|gb|AAO80550.1| transcriptional regulator, luxR family [Enterococcus faecalis V583]
 gi|306496062|gb|EFM65646.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0411]
 gi|306499390|gb|EFM68763.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0109]
 gi|306503184|gb|EFM72438.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0860]
 gi|306508609|gb|EFM77707.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX2134]
 gi|306510830|gb|EFM79847.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0855]
 gi|310628950|gb|EFQ12233.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0102]
 gi|311292515|gb|EFQ71071.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0470]
 gi|315029094|gb|EFT41026.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX4000]
 gi|315031442|gb|EFT43374.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0017]
 gi|315146952|gb|EFT90968.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX4244]
 gi|315153973|gb|EFT97989.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0031]
 gi|315156767|gb|EFU00784.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0043]
 gi|315157723|gb|EFU01740.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0312]
 gi|315164575|gb|EFU08592.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1302]
 gi|315170702|gb|EFU14719.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1342]
 gi|315172183|gb|EFU16200.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX1346]
 gi|315575359|gb|EFU87550.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0309B]
 gi|315581389|gb|EFU93580.1| transcriptional regulator, LuxR family [Enterococcus faecalis
           TX0309A]
          Length = 281

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++LT RE E L+ + E KT+ +IA  L +S  TV  +I +I  K     R+ 
Sbjct: 212 YQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNKRAE 263


>gi|329957147|ref|ZP_08297714.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
 gi|328523415|gb|EGF50514.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
          Length = 204

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  D    +   L+ RE E +T + +G T+  IA  L +S +TV  +  +I RK    
Sbjct: 121 HTEEEDEKDSEQETLSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIH 180

Query: 232 TRSGAIAYAVRNNIV 246
           + +G   YA+ N +V
Sbjct: 181 SPAGLTIYAIVNKLV 195


>gi|326441134|ref|ZP_08215868.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 219

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 33/60 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L+ +++G ++ +IA  LGIS + V  ++++++ K  +  R+       +  ++
Sbjct: 155 TQRERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLGLL 214


>gi|188993657|ref|YP_001905667.1| Two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735417|emb|CAP53632.1| Two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 274

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 201 DLTPQQFRVLQMLGVGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 256


>gi|149176998|ref|ZP_01855607.1| two component transcriptional regulator, LuxR family protein
           [Planctomyces maris DSM 8797]
 gi|148844253|gb|EDL58607.1| two component transcriptional regulator, LuxR family protein
           [Planctomyces maris DSM 8797]
          Length = 221

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L  ++ GK+  E+A  + +S  +++++   IM K     R     Y++R  +
Sbjct: 159 LTSRQIEVLRHLARGKSVKEVARSMHLSEKSIDSHKYRIMHKLGIHDRVELARYSIREGL 218


>gi|109898189|ref|YP_661444.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109700470|gb|ABG40390.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 218

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 66/174 (37%), Gaps = 11/174 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-FCPVFHTLPEN-----ITPPA 124
           E  L+ + S+D    ++  + +        +L    E    PV     E      +   +
Sbjct: 37  ESTLELVKSNDEIDLILLDLNMPGMTGLNGLLDVRNECPTTPVVIVSAETEKQKILQTLS 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + + +     I   +  +F     +  + +    +     AN     ++   K  
Sbjct: 97  YGAVGFIAKSSSKQVIGEAIQSVFAGNVYLPPNIMRSQAV-----ANQTNECEISPEKIS 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT RE+  L  +++G+ + +IA  L IS  T+ ++++SI++K     R   + 
Sbjct: 152 LLTRRELIVLKHLTKGEANKQIAYNLHISETTIKSHVSSILKKLGATNRVKVVV 205


>gi|332655205|ref|ZP_08420946.1| putative transcriptional regulator, LuxR family [Ruminococcaceae
           bacterium D16]
 gi|332516065|gb|EGJ45674.1| putative transcriptional regulator, LuxR family [Ruminococcaceae
           bacterium D16]
          Length = 266

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 28/62 (45%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K Y  +    F LT RE E L     G  ++EIA  + IS +TV  +  SI  K   K R
Sbjct: 188 KGYHENLCHQFGLTSREGEMLDLAVHGLGNEEIAQKMNISIHTVKKHFHSIYEKMHVKNR 247

Query: 234 SG 235
             
Sbjct: 248 VQ 249


>gi|163735876|ref|ZP_02143304.1| transcriptional regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
 gi|161390812|gb|EDQ15153.1| transcriptional regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
          Length = 239

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + +    K  ELT ++   +  I  GK + +IA  L ++  TV  +I +++R+   + R+
Sbjct: 154 ADEFQHPKLAELTPQQQRIMRLICFGKPNKQIAYELDLAEATVKAHITALLRRLGVRNRT 213

Query: 235 GAI-----AYAVRNN 244
            A+     A A +  
Sbjct: 214 QAVVLVEGAMAAQRG 228


>gi|148560164|ref|YP_001258354.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC
           25840]
 gi|148371421|gb|ABQ61400.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC
           25840]
          Length = 213

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+    R  
Sbjct: 149 LTPQQTRVLTMLTEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIG 207


>gi|87239941|dbj|BAE79496.1| putative transcriptional regulator [Nocardioides aromaticivorans]
          Length = 780

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE+E    +++G ++  IA  + +S  TV +++  I+ K   ++R+   A+
Sbjct: 723 LTRRELEVAQLVAQGLSNKAIAETMVVSTRTVESHVRHILTKLGFRSRAQVAAW 776


>gi|87118437|ref|ZP_01074336.1| Response regulator [Marinomonas sp. MED121]
 gi|86166071|gb|EAQ67337.1| Response regulator [Marinomonas sp. MED121]
          Length = 207

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            + D    K  +LT ++   LT I++G  + +IA  L +  +TV  +I+ I +K     R
Sbjct: 132 NTVDTVSEKIAQLTPQQFRVLTMIAKGDLNKQIAYQLNVKESTVKTHISEIFKKLGIINR 191

Query: 234 SGAIAY 239
           + A  +
Sbjct: 192 TQAALF 197


>gi|90425279|ref|YP_533649.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisB18]
 gi|90107293|gb|ABD89330.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB18]
          Length = 209

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT RE E L   S G T+ E    LGIS  T+  + A+IM+K   K  +  + 
Sbjct: 147 PLTMREREVLELFSSGNTNKEAGRQLGISPRTIEYHRANIMKKLGAKNATDLVR 200


>gi|332663436|ref|YP_004446224.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332250|gb|AEE49351.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 208

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           +++ +   G ++A  A +      H  ++  LT RE E L  IS GK+   IA  + I  
Sbjct: 118 IKEVMEGGGAMSANVARLVIKS-FHRNQNSPLTRRETEILEQISLGKSRKRIAEEMFIDM 176

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV ++I +I  K    +++ AI  A     +
Sbjct: 177 ETVKSHIKNIYLKLDVHSKADAIKLAKDKRFI 208


>gi|262373728|ref|ZP_06067006.1| glycerol metabolism activator [Acinetobacter junii SH205]
 gi|262311481|gb|EEY92567.1| glycerol metabolism activator [Acinetobacter junii SH205]
          Length = 216

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 152 LTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|238786248|ref|ZP_04630193.1| Two-component response regulator [Yersinia bercovieri ATCC 43970]
 gi|238712839|gb|EEQ04906.1| Two-component response regulator [Yersinia bercovieri ATCC 43970]
          Length = 210

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 15/176 (8%)

Query: 78  VSSDWPFDLVR-CMALSEKDKYYNV--LQRPTELFCPVFHTLPEN----ITPPAGMDNRY 130
           +  + P DLV   + L   D +  +  LQ+       +F +        +       N +
Sbjct: 43  ILKNSPVDLVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGF 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S   D++ I      +         + L ++            S      +   L+ RE
Sbjct: 103 ISKNKDISEILFAAQNVLRGYSFFPSEALTQLA--------GQPSSHDPVNRARLLSERE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 155 INVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|311741323|ref|ZP_07715147.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303493|gb|EFQ79572.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 217

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 2/166 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +  + +       +    +    F T    +         +   T 
Sbjct: 51  DVVLMDIRMPVMDGIEATAQLHSLAGARDIPVVMLTAFDTDEFILHALRAGAVGFLLKTT 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +       + +    L  +  LAA      +      G   EL+ RE E   
Sbjct: 111 APEALVASVRAAAQGQQQLSPTVLENLVGLAATPPQPEQEMIQPSGL-AELSERENEIAQ 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +++G ++ EIA  L IS  TV  ++  I+ K     R   IA AV
Sbjct: 170 LVAQGLSNAEIAEQLFISLTTVKTHMKHILAKIDGTNRVH-IAIAV 214


>gi|227523758|ref|ZP_03953807.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227089073|gb|EEI24385.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 209

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++    D  L+ +E+  L   ++G T+ EIA  L +S  TV NY+++I  K     R  A
Sbjct: 140 NMVNAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEA 199

Query: 237 IAYA 240
           +  A
Sbjct: 200 VNMA 203


>gi|226312572|ref|YP_002772466.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226095520|dbj|BAH43962.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 376

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A+   S+D    K   LT +E E    + +G T+ +I+  L IS NTV  ++ +I +K  
Sbjct: 306 ASRIASHDS--NKLALLTPKEWEVYELVQQGSTNKQISGKLHISLNTVKRHLQNIYKKME 363

Query: 230 TKTRS 234
              R+
Sbjct: 364 VTNRT 368


>gi|297243056|ref|ZP_06926994.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis AMD]
 gi|296889267|gb|EFH28001.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis AMD]
          Length = 246

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244
           L  +E++ +  +++G T+++IA  LG+  NT+N +I  I +K     R  AI A+A   N
Sbjct: 159 LPPQELKIMDLLAKGYTTNQIAAQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218


>gi|316935154|ref|YP_004110136.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602868|gb|ADU45403.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 208

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 11/131 (8%)

Query: 110 CPVFHTLPEN--ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
            P+F    +         + N          R +  +  +        R R        A
Sbjct: 80  APIFMISGKGDIAMAVNAIKNGALDFIEKPFRGKEIVSRVEEAIEAFSRRR-------DA 132

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            Q +   SY+    +   LT RE E L   S G T+ E    LGIS  T+  + A+IM+K
Sbjct: 133 SQGSKAPSYNFPGKEP--LTLREREVLELFSSGNTNKEAGRHLGISPRTIEYHRANIMKK 190

Query: 228 TATKTRSGAIA 238
              +  +  + 
Sbjct: 191 LGARNATDLVR 201


>gi|254515317|ref|ZP_05127378.1| regulatory protein, LuxR [gamma proteobacterium NOR5-3]
 gi|219677560|gb|EED33925.1| regulatory protein, LuxR [gamma proteobacterium NOR5-3]
          Length = 203

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 2/112 (1%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             YC       ++     ++   G  + RD L  I  L        +S D        LT
Sbjct: 87  RGYCHAEAVPEQLVEVAEVVSAGGLWMPRDLLQRISELGKRVDA--QSADRSPRHFEGLT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E    +  G  + E+A  LG+S  TV   + SI  K   + R     Y
Sbjct: 145 PREEEVALLVGRGYNNRELAEALGVSERTVKANLTSIFDKLGLRDRVQLALY 196


>gi|104779907|ref|YP_606405.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95108894|emb|CAK13590.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 249

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR- 141
           P  +   + L+ +    +V++   E F   +    +      G+  +  +L       R 
Sbjct: 71  PQRMFEAIMLTGRADKQDVIRALREGFADYYQKPMDLDELLEGVRRQEQALLERRRNFRE 130

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------DFELTGREVECLT 195
           +G +    +      D L++    A  Q    ++ D   G+        +L+ R++E   
Sbjct: 131 LGSLNQRLQELAESIDDLYQDLEKARGQGAHRRATDTDEGEAELPPAFEKLSPRQLEVAK 190

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +S+GKT+ +IA  LGI+ NTV  Y++ ++R T    R+   
Sbjct: 191 LVSKGKTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLA 232


>gi|329768816|ref|ZP_08260247.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325]
 gi|328839589|gb|EGF89164.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325]
          Length = 199

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +  +     L+ +E   L  + EG ++ EI+  L +S  T+ NYI++
Sbjct: 117 VLAGNKEYSPELMENIFTNHNPLSNQEKILLAKVKEGLSNKEISSELYLSEGTIRNYISN 176

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   K R+ A+  A     +
Sbjct: 177 ILTKLNCKNRTEAVKKATEEGWI 199


>gi|323345593|ref|ZP_08085816.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323093707|gb|EFZ36285.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 318

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + +      L+ RE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G 
Sbjct: 242 NQNPENQETLSDREKDVIVSLVQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGL 301

Query: 237 IAYAVRNNIV 246
             YA+ NN++
Sbjct: 302 TIYAIVNNLI 311


>gi|296390495|ref|ZP_06879970.1| transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 243

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 22/233 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKLDSIVSSDWPFDLVR 88
           D +AR+     T +    M      +G    ++        +++ +D +       D   
Sbjct: 10  DSVARLRKAATTEAVCREMVEFAVRLGFDRVIVCSLFPRPGEDELIDELFFVH--GDWAE 67

Query: 89  CMALSEKDKYY---NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             +  E+D Y     V +   EL  P F +   +  P   M  R      D+ ++    +
Sbjct: 68  GRSAQERDAYLLHCPVTRHILELDEPFFWSKSPSEDPAR-MAYRIVRGVRDLGQVNGMQV 126

Query: 146 LLFPKGRI-----ILRDRLWEIG----LLAAYQANMFKSY-----DVHWGKDFELTGREV 191
            +F +  +        +RL           A+   +F +       V  G    L+ RE 
Sbjct: 127 PVFGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSSGDAQALSERER 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E L WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 187 EVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|227508573|ref|ZP_03938622.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191905|gb|EEI71972.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 209

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++    D  L+ +E+  L   ++G T+ EIA  L +S  TV NY+++I  K     R  A
Sbjct: 140 NMVNAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEA 199

Query: 237 IAYA 240
           +  A
Sbjct: 200 VNMA 203


>gi|15282020|gb|AAK94468.1| response regulator CorR [Pseudomonas syringae pv. actinidiae]
 gi|320321462|gb|EFW77575.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 198

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +R   +   + R  +           +L+        + A  +               LT
Sbjct: 86  DRDAIVREAIQRGAVEFHSKAECPEHLLQ-------RIQALLSGEPPEPRTIAATPLPLT 138

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ + L  +  G T+ EIA+ L  S +TV +++ +I+    T  R+ A   A R  +V
Sbjct: 139 SRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHVQAILTILQTSCRTEAADAARRLGLV 197


>gi|83644489|ref|YP_432924.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632532|gb|ABC28499.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 223

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      V  +   + ++      I    +  +G   A  A      +         +
Sbjct: 107 RGYVPKNSPVEVVVSAVKVVLAGSCYIPPHAIRMLGFEPA--AGTVAIGNTAVETRPYFS 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ +   ++ EG  +  IA  L ++  TV  ++ +I R    + R+ AI  A +  ++
Sbjct: 165 PRQEQVFHYLLEGMPNKVIAARLDMAEGTVKTHMNTIFRALGVRNRAQAILKARQLGVI 223


>gi|269216885|ref|ZP_06160739.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC
           700122]
 gi|269129692|gb|EEZ60776.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC
           700122]
          Length = 491

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 15/186 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDW----PFDLVRCMA----LSEKDKYYNVLQRPTELFCPVF 113
           L+    L Q   L  + SS W     F  +        ++E   +   +  P        
Sbjct: 281 LVCVIVLPQYPMLRCVESSVWDLLVIFSWLTIADIARHMNEPPAFVFGMTWPAYTLPFAL 340

Query: 114 HTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI---ILRDRLWEIGLLAA 167
            TL           G+ + + +L    A +   L+ L  + +    I  D        + 
Sbjct: 341 GTLATGFMRAHAIGGVSDAFIALLM-FALLVTALIYLETRDQDTKQIFADEKAPASSASM 399

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +    ++       +F+LT REVE + ++  G+T   IA  L ++ NTV  +   +  K
Sbjct: 400 DEGRTLEARCNELAGEFKLTPREVEVMMYLYRGRTKAYIAETLFLTENTVRGHAKHLYAK 459

Query: 228 TATKTR 233
               +R
Sbjct: 460 LDVHSR 465


>gi|296130719|ref|YP_003637969.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
 gi|296022534|gb|ADG75770.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM
           20109]
          Length = 252

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 170 ANMFKSYDVHWGKDFELT---GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                S     G+   LT    RE + L  + +G  + EIA  L  S  TV   +  + R
Sbjct: 173 GPRTASTGRAPGQVLALTGVDERERQVLRLLGDGADTREIARRLSYSERTVKVVVQDLTR 232

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +   + R+ A+A+AVR+ ++
Sbjct: 233 RFGLRNRTHAVAFAVRHGLI 252


>gi|284029460|ref|YP_003379391.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283808753|gb|ADB30592.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 361

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + LT RE+E    I+ G ++ ++A  L +S++TV +++ SI  KT   +R   +A 
Sbjct: 287 YGLTDRELEITQLIARGLSTGQLAARLYLSQHTVRDHVKSIFAKTGVTSRGELVAK 342


>gi|114706025|ref|ZP_01438928.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
 gi|114538871|gb|EAU41992.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
          Length = 223

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 16/172 (9%)

Query: 77  IVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           +V    P D+++ +  +         V+   ++    V   L           +    L 
Sbjct: 54  LVDLQMPGDVLKTIVRTRGLAPETKIVMFTASDRVDHVIAALDAGADGYVLKGSSLEELL 113

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
             V  I+ G   + P               L++     F+       K  +L+ RE + +
Sbjct: 114 LAVEDIKAGKTYVSPS--------------LSSKMIQSFRQKAETQRKRVDLSLREEQII 159

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++SEG  +  IA+ L IS  TV +Y+  +++K   + R   +  A R  ++
Sbjct: 160 RFLSEGLPNKTIAIRLNISEKTVKHYMTGLIQKLEARNRLEVVMRAQRMGLL 211


>gi|254230090|ref|ZP_04923487.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262392985|ref|YP_003284839.1| transcriptional regulator LuxR family [Vibrio sp. Ex25]
 gi|151937379|gb|EDN56240.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262336579|gb|ACY50374.1| transcriptional regulator LuxR family [Vibrio sp. Ex25]
          Length = 209

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 144 AEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIM 203


>gi|310826620|ref|YP_003958977.1| salavaricin two-component response regulator [Eubacterium limosum
           KIST612]
 gi|308738354|gb|ADO36014.1| salavaricin two-component response regulator [Eubacterium limosum
           KIST612]
          Length = 204

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + +  DRL E  +       +F   + +     ELT  E + L  +SEG     IA IL
Sbjct: 105 NKNLDPDRLLESLIQINKGVPVFPRANEYIE---ELTATETKILQLLSEGYKRKAIAEIL 161

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             S  T++N+I  I  K    +   A+   ++   +
Sbjct: 162 FSSERTISNHIQHIFDKLDVSSSLEAVTKGIKLGYI 197


>gi|239626204|ref|ZP_04669235.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239520434|gb|EEQ60300.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 343

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +H+   ++LT RE + L  +   K + EI+  L IS  TV  ++ +I +K     RS  
Sbjct: 271 LHFASHYQLTSREQDILRILLTDKNNQEISDALFISIGTVKTHVHNIFQKVNVTKRSQL 329


>gi|238897394|ref|YP_002923071.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465149|gb|ACQ66923.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 210

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+EG ++  IA  L IS  TV  +  ++M+K      +  I ++ R  I
Sbjct: 149 LTSRERQILKLITEGVSNRIIADRLYISEKTVETHRLNMMKKLDVHKVAQLIQWSQRLGI 208


>gi|224367385|ref|YP_002601548.1| DNA-binding response regulator (LuxR-family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690101|gb|ACN13384.1| DNA-binding response regulator (LuxR-family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 220

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 78/224 (34%), Gaps = 21/224 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++  D        +  L E  G    L V W     ++   +     P  ++  + 
Sbjct: 1   MPPRILIADDHAIVREGLRVLLERKG----LEVPWMAENGRQAVCLAVKFKPDIVIMDIT 56

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM--DNRYCSLTFDVARIRIGL----- 144
           +   +               +   LP        M  D RY    F+   I   L     
Sbjct: 57  MPNMNGSIA--------TEKIMQALPRTRVIALSMHADRRYIDRMFNAGAIAYVLKDSAF 108

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKT 202
             LF   + + R + +    +A   A+   S      K     ++ RE E L  I+EG  
Sbjct: 109 AELFDAIQAVGRGKYYISPSIAKTLADSCTSAPDTPQKCPFGRISPREREVLQLIAEGVK 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L +S  TV  +  +IM K    + +G   +A++  +V
Sbjct: 169 TRQIAERLFVSIKTVEAHRRNIMNKLMISSVAGLTRFAIQEGLV 212


>gi|148240406|ref|YP_001225793.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848945|emb|CAK24496.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 234

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSY 176
           E I  P   +         +AR  + LM +      IL   R  +  +   Y    ++  
Sbjct: 111 EQIDSPRLKEVMASPADVVLARPSLDLMSIVNAVESILAGVRFVDPSI--PYALRQYELS 168

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            +H      L+ +E   L  +  G T+  I   L I+  T   ++ SIMRK   + R+ A
Sbjct: 169 GIHV-----LSEQERRVLQLLCNGFTNKGIGEALSIAETTARGHVQSIMRKLNVRDRTAA 223

Query: 237 IAYAVRNN 244
               +R +
Sbjct: 224 AVEGIRRH 231


>gi|29345930|ref|NP_809433.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568671|ref|ZP_04846082.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|29337824|gb|AAO75627.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842744|gb|EES70824.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 203

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 36/74 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S +        L+ RE E +  + +G T+ EIA  L +S +TV  +  +I +K    +
Sbjct: 122 LASEEEELDNQETLSQREKEIVVCVVKGMTNKEIAENLFLSIHTVITHRRNISKKLQIHS 181

Query: 233 RSGAIAYAVRNNIV 246
            +G   YA+ N +V
Sbjct: 182 AAGLTIYAIVNKLV 195


>gi|312959247|ref|ZP_07773765.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311286507|gb|EFQ65070.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 210

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 76/205 (37%), Gaps = 10/205 (4%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
             + +  L E  G    ++   D   +     +     P  ++  + + + D    V+ R
Sbjct: 13  IRLAVRMLMERHGYE--VVAETDNGVDAL--QLAREHMPDIVILDIGIPQLDG-LEVICR 67

Query: 105 PTELFCPV-FHTLPENITPPAGMDNRYCSLTFD--VARIRIGLMLLFPKGRIILRDRLWE 161
            +    P  F  L      P     R         V + +    LL     ++     + 
Sbjct: 68  LSSTKQPAPFKVLVLTSQAPGHFSMRCMQAGAAGYVCKQQDLTELLSAIKAVLSGYSYFP 127

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              L + ++ M  + +    +   L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y 
Sbjct: 128 NQALNSVRSTMGNASEADMVER--LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYK 185

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ K   ++    I  A RN +V
Sbjct: 186 TRLLLKLNARSLVDLIELAQRNGLV 210


>gi|326317305|ref|YP_004234977.1| LuxR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374141|gb|ADX46410.1| transcriptional regulator, LuxR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 264

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           F + ++ L D +  +  +A    +      +      +D  L+ RE EC+   +EG  S 
Sbjct: 153 FAQKKMSLVDSVMRLAYMAHILNDHLLKVFTKIQLTPRDVALSDREHECVLLAAEGMPSK 212

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L  + +T+  ++ S  RK   + R+  IA A     +
Sbjct: 213 QIAARLNRAESTIVFHLQSAARKLGGRNRAQMIARAAHFGYL 254


>gi|83747869|ref|ZP_00944902.1| PrhJ [Ralstonia solanacearum UW551]
 gi|207739207|ref|YP_002257600.1| transcription regulator prhj protein [Ralstonia solanacearum
           IPO1609]
 gi|83725516|gb|EAP72661.1| PrhJ [Ralstonia solanacearum UW551]
 gi|206592580|emb|CAQ59486.1| transcription regulator prhj protein [Ralstonia solanacearum
           IPO1609]
          Length = 175

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R+ + L   + GK++ EIA  L IS  TV +++  I+ +   + R+   A
Sbjct: 108 LTPRQHDILREAAHGKSNVEIAQTLHISVETVKSHVRQILMRLQARNRTELAA 160


>gi|300693797|ref|YP_003749770.1| transcription regulator for hrp genes expression [Ralstonia
           solanacearum PSI07]
 gi|299075834|emb|CBJ35143.1| transcription regulator for hrp genes expression [Ralstonia
           solanacearum PSI07]
          Length = 174

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L A +  +    D    +   LT R+ + L   + GK++ EIA  L IS  TV +++  I
Sbjct: 87  LEARRHGVEPRPDT-SARLSALTPRQRDILREAAHGKSNVEIAQTLHISVETVKSHVRQI 145

Query: 225 MRKTATKTRSGAIA 238
           + +   + R+   A
Sbjct: 146 LMRLEARNRTELAA 159


>gi|118617914|ref|YP_906246.1| two component transcriptional regulatory protein DevR
           [Mycobacterium ulcerans Agy99]
 gi|183981531|ref|YP_001849822.1| two-component transcriptional regulatory protein DevR
           [Mycobacterium marinum M]
 gi|118570024|gb|ABL04775.1| two component transcriptional regulatory protein DevR
           [Mycobacterium ulcerans Agy99]
 gi|183174857|gb|ACC39967.1| two-component transcriptional regulatory protein DevR
           [Mycobacterium marinum M]
          Length = 216

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA   +  +           LT +E   L  +SEG T+ +IA  + ++  TV NY++ ++
Sbjct: 130 AAALMSRLRGVVERPDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLL 189

Query: 226 RKTATKTRSGAIAYAVRNN 244
            K   + R+ A  +A    
Sbjct: 190 AKLGMERRTQAAVFAAELK 208


>gi|75812851|ref|YP_320468.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705607|gb|ABA25279.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 262

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + + +E+  L   + G  ++EIA ++ +S  TV +Y+ +   K   K R  AI  A+R  
Sbjct: 159 DFSNKEITVLKLAAGGMKNNEIANVMYVSEGTVRSYLHNSFIKLGVKDRLNAIREAIRLG 218

Query: 245 IV 246
           I+
Sbjct: 219 IL 220


>gi|325832644|ref|ZP_08165442.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|325485965|gb|EGC88425.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 492

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 38/96 (39%)

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           I L+ +    +   R++            + F +          LT RE E L  ++ G+
Sbjct: 392 IVLLFMLRIRKRSEREQRPAASGEPVRGEDAFDAKGTEVTVRHGLTDRESEILLLLARGR 451

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +S  I   L +S NTV  +I +I  K    ++   I
Sbjct: 452 SSTYIGEALYLSPNTVRGHIKNIYAKLGVHSKQEII 487


>gi|257882181|ref|ZP_05661834.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|294621968|ref|ZP_06701113.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|257817839|gb|EEV45167.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|291598447|gb|EFF29519.1| DNA-binding response regulator [Enterococcus faecium U0317]
          Length = 197

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +   M     +        + RE+  +  ++ GK + EIA  L +S  TV NYI+ +
Sbjct: 117 IETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQL 176

Query: 225 MRKTATKTRSGAIAYAVRN 243
           + K   + R+    Y  ++
Sbjct: 177 LEKLDLRDRTQLAIYFYQH 195


>gi|253987949|ref|YP_003039305.1| LuxR family transcriptional regulator [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779399|emb|CAQ82560.1| similar to luxr family transcriptional regulators [Photorhabdus
           asymbiotica]
          Length = 251

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW------GKDFELTGREVECLTWI 197
           L+L+  + +  LR  L  I  +A     M                 + LT RE E +  I
Sbjct: 140 LLLIQKQHKKSLRTVLEIIRSVARLHDEMMLQAPAAEMVCLDTQIRYALTPRECEIVELI 199

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            +GK S +IA  L IS  TV N+  +I +K     RS A
Sbjct: 200 LQGKGSPQIAEKLFISTGTVKNHRKNIYQKLQI--RSQA 236


>gi|238064269|ref|ZP_04608978.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237886080|gb|EEP74908.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 197

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +          LT R+   L  ++EG+ +  IA  L  S +TV N I  +M +   + R
Sbjct: 125 PAGTSRAAGRSPLTPRQTRVLALMAEGQDNAMIARSLLCSNHTVKNVIYDMMARLQVRNR 184

Query: 234 SGAIAYAVRNNIV 246
           + A+A  V   ++
Sbjct: 185 AHAVACGVEAGLI 197


>gi|326330805|ref|ZP_08197106.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
 gi|325951335|gb|EGD43374.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
          Length = 228

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 5/172 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  +   +     + P  +    F      +   A     +     
Sbjct: 61  DVVLMDIRMPRINGLDATR--RVLTEARPPRVIVLTTFGADEYVVDALAAGAEGFLLKDT 118

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
               I   +  +     I+         L+   +A          G+  E LT RE E  
Sbjct: 119 PPPEIVAAIRAVAAGEPILSPKATR--TLITRLRAEPTGDRAAAAGRRLEALTEREHEVA 176

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  G ++ EIA  L +S  TV  +++ +  K     R           +V
Sbjct: 177 LAVGRGLSNAEIAKELYLSIPTVKAHVSRLFDKLGATNRVQIAITVHDAGLV 228


>gi|315225545|ref|ZP_07867355.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
 gi|314944489|gb|EFS96528.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
          Length = 216

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 28/61 (45%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +    D  LT RE E L    EG  S EI+  L IS +TVN +  +I+ K        AI
Sbjct: 156 IESATDTLLTPREREILALAKEGMFSKEISEKLNISIHTVNRHRQNILEKLQVDNMIEAI 215

Query: 238 A 238
            
Sbjct: 216 R 216


>gi|293192365|ref|ZP_06609476.1| DNA-binding response regulator VraR [Actinomyces odontolyticus
           F0309]
 gi|292820280|gb|EFF79274.1| DNA-binding response regulator VraR [Actinomyces odontolyticus
           F0309]
          Length = 204

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 7/175 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN------ITPPA 124
           +  L+ +  +    D VR   L   D     LQ P      + + L  +      +   +
Sbjct: 20  DDALEVVAEAGSVADAVRRADLVRPDVILVDLQLPDGTGIDIMNRLRSSHPQILPVVLTS 79

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             D+   + + +       L  +       +   + +  +L   +    +  D H     
Sbjct: 80  FDDDEALAESLEAGARAYILKTVRGAEITDVIKAVADGRVLLDERTLTRRRVD-HEDPTA 138

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 139 DLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAAW 193


>gi|17158788|ref|NP_478299.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134737|dbj|BAB77295.1| alr7652 [Nostoc sp. PCC 7120]
          Length = 262

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + + +E+  L   + G  ++EIA ++ +S  TV +Y+ +   K   K R  AI  A+R  
Sbjct: 159 DFSNKEITVLKLAAGGMKNNEIANVMYVSEGTVRSYLHNSFIKLGVKDRLNAIREAIRLG 218

Query: 245 IV 246
           I+
Sbjct: 219 IL 220


>gi|238795683|ref|ZP_04639197.1| Two-component response regulator [Yersinia mollaretii ATCC 43969]
 gi|238720409|gb|EEQ12211.1| Two-component response regulator [Yersinia mollaretii ATCC 43969]
          Length = 210

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 15/176 (8%)

Query: 78  VSSDWPFDLVR-CMALSEKDKYYNV--LQRPTELFCPVFHTLPEN----ITPPAGMDNRY 130
           +  + P DLV   + L   D +  +  LQ+       +F +        +       N +
Sbjct: 43  ILKNNPVDLVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGF 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S   D++ I      +         + L ++            S      +   L+ RE
Sbjct: 103 ISKNKDISEILFAAQNVLRGYSFFPSEALTQLA--------GQPSSHDPVNRARLLSERE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 155 INVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|326801131|ref|YP_004318950.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551895|gb|ADZ80280.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 223

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 7/137 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  +L          D         + +I  G+         +L ++L     L    ++
Sbjct: 92  VLESLRVGAWGYLLKDTDKNEFIKALKQINNGIRYYSGSVSNVLANQL-----LGGAGSS 146

Query: 172 MFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             +  +        + L+ RE + L  +  GK + +IA +LG S  T+  +  +IM+K  
Sbjct: 147 SIRVNEAVESNTDIYGLSKREKQILGMVINGKHNKDIAEVLGKSVRTIETHRFNIMKKLG 206

Query: 230 TKTRSGAIAYAVRNNIV 246
                  I  A++ N++
Sbjct: 207 VNNAVDMINKAMKENLI 223


>gi|311280576|ref|YP_003942807.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
 gi|308749771|gb|ADO49523.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
          Length = 210

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 18/173 (10%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
            P DLV   + L   D +  + +      R   LF                  N + S  
Sbjct: 48  HPTDLVILDVELPGTDGFSLLKRINEINRRTKVLFLSSKSENFYAGRAIRAGANGFVSKR 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVEC 193
            D   I   + +L         D L  +           +S+     K +  L+ REV  
Sbjct: 108 KDQNDIYKAVEMLLSGYSFFPADTLSALS----------RSHIRRGSKTELPLSNREVMV 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +++ G T+ EIA  L +S  T++ + ++I  K   +T    I YA  + ++
Sbjct: 158 LRYLANGLTNKEIADKLLLSNKTISAHKSNIFSKLGVRTIVELIDYAKAHELL 210


>gi|307708433|ref|ZP_07644899.1| SalR [Streptococcus mitis NCTC 12261]
 gi|307615532|gb|EFN94739.1| SalR [Streptococcus mitis NCTC 12261]
          Length = 198

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + +  D L +  L   Y      S +V       LT RE+E L  +  G T D++   +
Sbjct: 104 DKSMDPDELVK-KLEKIYLGGKIFSDEVMVEV---LTPREIEILELVRNGLTIDDVCDKV 159

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +S+ TV+N++A+I  K     R  AI  A +  
Sbjct: 160 YVSKRTVSNHLANIFSKLGVANRQEAIHIAEQLG 193


>gi|226359669|ref|YP_002777447.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226238154|dbj|BAH48502.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 785

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +A                   LT RE +    +++G T+  IA  L IS+ T   ++  
Sbjct: 700 AVALALDERRPDAAASSNGTPHLTKRESQVAELVADGLTNKAIAARLVISQRTAQGHVEH 759

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           I+ K    +R+   A+ V +
Sbjct: 760 ILAKLGFTSRTQIAAWIVEH 779


>gi|182437087|ref|YP_001824806.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178465603|dbj|BAG20123.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 214

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 5/139 (3%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    F              + +     D   +  G+  +   G  +       +  +A 
Sbjct: 76  IMLTTFGQDEYVTRALEEGADGFLLKADDPRELLNGVRAVGAGGAYLSPRVAGRV--IAG 133

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +A+          +   LT RE E L  +  G ++ EIA  L +   TV  ++++++ K
Sbjct: 134 MRAHRAAHPHRSLAR---LTEREREVLAGLGAGLSNAEIASRLHLVEGTVKAHVSAVLAK 190

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R  A   A   ++V
Sbjct: 191 LGARNRVEAAIAAYEADLV 209


>gi|294651876|ref|ZP_06729166.1| LuxR family DNA-binding response regulator [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292822199|gb|EFF81112.1| LuxR family DNA-binding response regulator [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 217

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y   +   + I   +  +      +  +      L      +   + +    +  + 
Sbjct: 98  AMGYIPKSSHPSHIGEAIKHVLEGEIWLPPN------LPTHASFDPRAADETALAERLQS 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 152 LTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|271965145|ref|YP_003339341.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508320|gb|ACZ86598.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 49/166 (29%), Gaps = 8/166 (4%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYC 131
           V+  WP  ++  + +   D    + +       P  +    F       +        + 
Sbjct: 43  VARHWPHVVLMDVQMPHMDGVAALKEINRSPNPPKVVMLTTFDRDEYVYSALRAKAAGFL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +      +         ++ A+             +   LT RE 
Sbjct: 103 LKDTAPRDLIAAVRTVAGGSATLAPTVTKR--MIDAFAGQQAPDARAARARLAALTDRER 160

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + +  ++ G  + EIA  L +S  TV  +++  + K     R    
Sbjct: 161 QVVQVVARGLANAEIARELSMSETTVKAHVSRSLAKLGLANRVQIA 206


>gi|256423541|ref|YP_003124194.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256038449|gb|ACU61993.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 208

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T RE E L   +EG T  +IA  L IS  TV ++  ++M K    + + AI  A +  
Sbjct: 147 KMTRREKEILKLAAEGLTIAQIAEKLFISPYTVESHRKNLMDKFEVNSVAAAIKLAGQYG 206

Query: 245 IV 246
            +
Sbjct: 207 FL 208


>gi|167908280|ref|ZP_02495485.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 78

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K+          LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K    +R
Sbjct: 2   KAGSPRAVPSVVLTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSR 61

Query: 234 SGAIAYAVRNNIV 246
             A+  A+   ++
Sbjct: 62  KHAVRRALVLGLL 74


>gi|134101423|ref|YP_001107084.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133914046|emb|CAM04159.1| probable transcriptional regulator, LuxR family [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 84

 Score = 75.0 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++LT RE++ +T ++ G ++ EIA  L +SR TV+ ++  I+ K A  +R+   A A R
Sbjct: 11  PYDLTVRELQIVTLLAVGASNPEIADALVVSRRTVSTHVEHILAKLAVASRAEVAALAAR 70

Query: 243 NNI 245
             +
Sbjct: 71  EGL 73


>gi|330898318|gb|EGH29737.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 220

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 3/140 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +        P+ I     +  +   L    A      +         L   + ++ +  A
Sbjct: 79  VLILSAQNDPDMIMRTLDIGAQGYLLKDTTAAELEQALEALRGNERYLSPAIAQMVIECA 138

Query: 168 YQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +     S      K+ F LT R++E L  I  GK++ EIA  LG+S  T+  + A +M+
Sbjct: 139 LRG--TPSDRAQAAKERFRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMK 196

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +      +G + + VR  I+
Sbjct: 197 RLQIFDVAGLVLFCVRERII 216


>gi|315182709|gb|ADT89622.1| two component transcriptional regulator, LuxR family [Vibrio
           furnissii NCTC 11218]
          Length = 197

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +    +D  L+ RE + L  I  G  + +IA  L IS  TV  +   I +K    + + 
Sbjct: 126 NEKPAERDETLSKRESDVLKAIVSGCGNKDIADTLHISVRTVETHRLRIKKKLGASSTAA 185

Query: 236 AIAYAVRNNIV 246
            +  A+   +V
Sbjct: 186 LVKLALEKGLV 196


>gi|283457639|ref|YP_003362223.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133638|dbj|BAI64403.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Rothia mucilaginosa DY-18]
          Length = 235

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L + +  +            +  +  G    LT RE + L   + G T+ +IA  L +S 
Sbjct: 145 LAEAIRRVHAGLRVVDPSLAADSLVTGAS-PLTEREAQVLREAASGGTAQQIASALFLSA 203

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            TV NY+++ M KT   TR  A+  A  N 
Sbjct: 204 GTVRNYLSAAMAKTGASTRQDAVRIATENG 233


>gi|260461884|ref|ZP_05810129.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259032131|gb|EEW33397.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 219

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++   L  ++EG  + +IA  LG+S  T+  ++++I++K    +R+ A+ 
Sbjct: 153 LTPQQTRVLGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVI 205


>gi|229815028|ref|ZP_04445365.1| hypothetical protein COLINT_02069 [Collinsella intestinalis DSM
           13280]
 gi|229809258|gb|EEP45023.1| hypothetical protein COLINT_02069 [Collinsella intestinalis DSM
           13280]
          Length = 275

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
           ELT RE E +  ++EG  + EI+    IS  TV N I+S+++KT  K R+  A+A+
Sbjct: 214 ELTEREYEVVRLVAEGLDNHEISAAAFISEGTVRNRISSVLQKTGHKNRTQLAVAW 269


>gi|91228457|ref|ZP_01262381.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269966819|ref|ZP_06180892.1| Transcriptional regulator [Vibrio alginolyticus 40B]
 gi|91187992|gb|EAS74300.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269828486|gb|EEZ82747.1| Transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 209

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 144 AEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIM 203


>gi|17158658|ref|NP_478169.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|17134607|dbj|BAB77165.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 240

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 17/173 (9%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           ++ ++ +V    P      +  +E     + L    ++ C   +     +T P   + R 
Sbjct: 73  DKVMEYVVCHHAPAH--EQIIFTEATWKQSEL---YQIGCGKIYDHEHIMTGPIVGEGRL 127

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW----GKDFEL 186
                      +             +D L    + A   A +      H       +  L
Sbjct: 128 I--------GTVQFARTSGNPAYNTQDLLQLSAICAHLSAKLALLRSQHELFVPKPEISL 179

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE++    +++G T+ EIA  L IS+NTV   +  I RK     R+  +A 
Sbjct: 180 TPRELQMAALVAKGLTNAEIAAELWISQNTVKQTLKRIFRKLDVSARAEMVAR 232


>gi|89098238|ref|ZP_01171123.1| two-component response regulator involved in degradative enzyme
           [Bacillus sp. NRRL B-14911]
 gi|89087095|gb|EAR66211.1| two-component response regulator involved in degradative enzyme
           [Bacillus sp. NRRL B-14911]
          Length = 217

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 169 QANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           + ++  S+D    +    LT RE E      +  T+ EIA  L I+++TV+ +I  I++K
Sbjct: 136 EYDIMPSFDKREMQQIPGLTRREWEIFQLTVKDMTNQEIAESLSINQSTVSVHIKGIVKK 195

Query: 228 TATKTRSGAIAYAVRNN 244
           T +KT  GA+A  +R  
Sbjct: 196 TGSKTIRGAVAKGLRYG 212


>gi|294677195|ref|YP_003577810.1| two component LuxR family transcriptional regulator [Rhodobacter
           capsulatus SB 1003]
 gi|294476015|gb|ADE85403.1| two component transcriptional regulator, LuxR family [Rhodobacter
           capsulatus SB 1003]
          Length = 239

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 10/184 (5%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLV----RCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           +   D  +   +    +   P D++        ++  D    + Q   E+   V  ++ +
Sbjct: 44  IASADSLETALIRVESAEGAPADVLVLDLNLPDVNGLDGLMRLRQAAPEMPIVVVSSIDD 103

Query: 119 NITPPAGMDNRYCSLTF--DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                A +               +         +G I + +   +    +    +     
Sbjct: 104 PRVIRAAISAGAAGFVPKHSRRELFRAAFAAIARGEIFVPESTGD----SLATGDGMSPQ 159

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    +   LT ++   L  I  GK + +IA  L I+  TV  ++ +IMRK    +R+ A
Sbjct: 160 DEAIRRLSLLTRQQANILEQICAGKMNKQIAYDLSIAETTVKAHVTAIMRKLGVYSRTQA 219

Query: 237 IAYA 240
           +  A
Sbjct: 220 VLLA 223


>gi|255532546|ref|YP_003092918.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255345530|gb|ACU04856.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 251

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--L 186
           +   LT D        +++  +   +     ++I L+  +    F +  +    +     
Sbjct: 132 QALMLTLDETGGYGKSLIINTRIDHLGHTPNYKISLIGLHGEPSFMNLSIDENTEVPISF 191

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++ +  IS+G  S EIA  L I+ +TV  +  +I+ K   K  +  +   + + ++
Sbjct: 192 SKREIDIIKNISKGLNSGEIANKLFIAESTVKQHRKNILTKAECKNTAQLVKTCILHGLI 251


>gi|157375006|ref|YP_001473606.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157317380|gb|ABV36478.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 219

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 15/162 (9%)

Query: 84  FDLVR-CMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGM---DNRYCSLTFD 136
           FDLV   + +     Y  ++   T    L   V     +NIT    +      +      
Sbjct: 54  FDLVMLDLQMPGSHGYSTLIHLRTHYPDLPVVVISAHEDNITISRAVHYGSAGFIPKLAS 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +  +   L  +      +  D           Q+    + D+   K  +LT ++ + L  
Sbjct: 114 METLATALSAVLEGDIWLPAD--------VELQSIDEDATDLMASKLADLTPQQYKVLGM 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 166 FAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|186471902|ref|YP_001863220.1| ATP-dependent transcription regulator LuxR [Burkholderia phymatum
           STM815]
 gi|184198211|gb|ACC76174.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia phymatum STM815]
          Length = 928

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K    +R  A+  A+   +
Sbjct: 864 LTPKEREILELLGRSLSNKEIALAMSVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 923

Query: 246 V 246
           +
Sbjct: 924 L 924


>gi|257885374|ref|ZP_05665027.1| regulatory protein [Enterococcus faecium 1,231,501]
 gi|257821230|gb|EEV48360.1| regulatory protein [Enterococcus faecium 1,231,501]
          Length = 209

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +   M     +        + RE+  +  ++ GK + EIA  L +S  TV NYI+ +
Sbjct: 129 IETFTQMMKNKSTIDSHAYASFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQL 188

Query: 225 MRKTATKTRSGAIAYAVRN 243
           + K   + R+    Y  ++
Sbjct: 189 LEKLDLRDRTQLAIYFYQH 207


>gi|154509006|ref|ZP_02044648.1| hypothetical protein ACTODO_01523 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798640|gb|EDN81060.1| hypothetical protein ACTODO_01523 [Actinomyces odontolyticus ATCC
           17982]
          Length = 204

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 7/162 (4%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN------ITPPAGMDNRYCSLTFDV 137
            D VR   L   D     LQ P      + + L  +      +   +  D+   + + + 
Sbjct: 33  ADAVRRADLVRPDVILVDLQLPDGTGIDIMNRLRSSHPQILPVVLTSFDDDEALAESLEA 92

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                 L  +       +   + +  +L   +    +  D H     +LT  E + L  I
Sbjct: 93  GARAYILKTVRGAEITDVIKAVADGRVLLDERTLTRRRVD-HEDPTADLTPSERKVLDLI 151

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 152 GDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAAW 193


>gi|37681305|ref|NP_935914.1| LuxR family transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200056|dbj|BAC95885.1| transcriptional regulator, LuxR family [Vibrio vulnificus YJ016]
          Length = 215

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 148 AEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 206


>gi|330953920|gb|EGH54180.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 220

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 3/140 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +        P+ I     +      L    A      +         L   + ++ +  A
Sbjct: 79  VLILSMQNDPDMIMRALDIGAHGYLLKDTTAAELEQALGALRSNERYLSPAIAQMVIECA 138

Query: 168 YQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +     S      K+ + LT R++E L  I  GK++ EIA  LG+S  T+  + A +M+
Sbjct: 139 LRG--TPSDRAQAAKERYRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMK 196

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +      +G + + VR  I+
Sbjct: 197 RLQIFDVAGLVLFCVRERII 216


>gi|326771911|ref|ZP_08231196.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326638044|gb|EGE38945.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 233

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 15/187 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           + +R            V    P   V  +   + D Y                 +    +
Sbjct: 56  MDIRMPTLDGISATRAVLGSHPDLKVLILTTFDLDDYL-------------VAAMRAGAS 102

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKG-RIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                D+    L   +  +  G  ++ P   R +L+      G  A              
Sbjct: 103 GFLLKDSTAHELLAGIRAVARGDSVVAPSATRRLLKRWFAPAGSTAGPAGPSEPGAGTAH 162

Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +  + L+ RE E +T +    ++ EIA  L ++ +T+ +++  I+ K   + R+  I  
Sbjct: 163 TESIDALSDREKEIVTLVGRAMSNTEIAQHLVLAESTIKSHLNRILHKLELRDRAQLIVL 222

Query: 240 AVRNNIV 246
           A  + +V
Sbjct: 223 AYESGLV 229


>gi|300789062|ref|YP_003769353.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798576|gb|ADJ48951.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 3/171 (1%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D     +  +  + + +  +  +    +    F              N +     
Sbjct: 49  DVVLMDIRMPGIDGVETTRRIRRGHPAEEVRIVVLTTFDHDENVFAALRAGANGFLGKGV 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
             A +   ++ +   G  +         L+     +     +    + FE LT RE+E +
Sbjct: 109 GPAELTTSILEVAAGGGALTPA--ATAALIDHVARDAGSRPEPEIARLFETLTPRELEIV 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +  G  + EIA ++ +S  TV  +    M K   + R+  +  A R  I
Sbjct: 167 EAVVSGLDNAEIAALMSVSPFTVKTHANRAMTKVGARDRAQLVTLAFRAGI 217


>gi|157962375|ref|YP_001502409.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157847375|gb|ABV87874.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 219

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +    K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A
Sbjct: 146 NQMASKLADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQA 205

Query: 237 IAYAVRN 243
           +  A++ 
Sbjct: 206 VI-ALQQ 211


>gi|27525450|emb|CAD56976.1| putative regulatory protein [Citrobacter freundii]
          Length = 210

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 16/171 (9%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    V     ++ +  AG       N + S  
Sbjct: 48  YPVDLVILDIELPGSDGFTLLKRIKSLQEKTRVLFLSSKSESFYAGRAIRAGANGFVSKR 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+  I   + ++         D L  I  + A +  +          D  L+ REV  L
Sbjct: 108 KDLNDIYNAVKMILSGYSFFPSDTLNFINNINAQKGVL---------NDMPLSNREVTVL 158

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +++ G ++ EIA  L +S  T++ + A+I  K    T    I YA  + +
Sbjct: 159 RYLANGLSNKEIAEQLLLSNKTISAHKANIYSKLGLHTIVELIDYAKMHEL 209


>gi|17233235|ref|NP_490325.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17135757|dbj|BAB78303.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 218

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+  E++ ++ ++ G ++  IA  L I+++TV  +I  I  K     R  A+  A +
Sbjct: 147 QDHLSNTEMQIISLMAAGFSNKHIAEQLFITQSTVKGHINKIFAKLDVADRVNALIVASK 206

Query: 243 NNIV 246
              +
Sbjct: 207 LGYI 210


>gi|284042085|ref|YP_003392425.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946306|gb|ADB49050.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 216

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R +      E  L  +    +        G+    T RE E L  +++G T+ E A  L 
Sbjct: 116 RAVSAAARGEAVLAPSVATRLLGRVRAPDGEPV--TDREREVLALVAQGATNREAARRLF 173

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  T+  ++  +  K     R+ A+A A    ++
Sbjct: 174 ISEATIKTHLLHVYAKLGVNDRAAAVAAAYDRGLL 208


>gi|302530152|ref|ZP_07282494.1| two component transcriptional regulator [Streptomyces sp. AA4]
 gi|302439047|gb|EFL10863.1| two component transcriptional regulator [Streptomyces sp. AA4]
          Length = 197

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    L+ REV+ L  ++EG  + EIA  L  S  TV N I  +  +   + R  A+A
Sbjct: 130 RNGDRTNLSPREVDVLRLMAEGWDTAEIANKLCYSERTVKNVIYGMTNRLKLRNRPHAVA 189

Query: 239 YAVRNNIV 246
           YA+R  ++
Sbjct: 190 YALRAGVI 197


>gi|119896860|ref|YP_932073.1| DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119669273|emb|CAL93186.1| DNA-binding response regulator [Azoarcus sp. BH72]
          Length = 211

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 11/157 (7%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           S  D    + +R       V    PE+   +       + Y     +   +   +  +  
Sbjct: 61  SGVDVLRTLRRRGDSTRVLVLTGFPEDRYAVAMIRLGADGYLCKNCERDELVQAIRTIAQ 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             R +         LLA   A      D       +L+ RE++    ++ G++   IA  
Sbjct: 121 GRRYLSA---RTAELLAGEIAG-----DGSGAAHEQLSERELQVFLRLAHGESVSAIADA 172

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +S  TV+ Y + ++ K    + +    YA+R+ ++
Sbjct: 173 LHLSIKTVSTYRSRVLEKLDVTSNAELATYAIRHGLI 209


>gi|302562036|ref|ZP_07314378.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           griseoflavus Tu4000]
 gi|302479654|gb|EFL42747.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           griseoflavus Tu4000]
          Length = 233

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 4/169 (2%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D    ++  +A + +      L     +    F              + +     
Sbjct: 69  DVVLMDIRMPVLDGLAATRRVTGDADLGEVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 128

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++         L+A + A   +            T RE E + 
Sbjct: 129 EPEELLRAVRAVVEGDALLSPGVTRR--LIAEFAARSKEPAAAGGLAAL--TEREREVMA 184

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A    
Sbjct: 185 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARARAQLVVLAYETG 233


>gi|284007635|emb|CBA73286.1| type III secretion two-component response regulator [Arsenophonus
           nasoniae]
          Length = 214

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 10/156 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY--CSLTFDVARIRIGLMLLF 148
            +S  +    + +R  +L   V     E       +D       L        I  +   
Sbjct: 66  GMSGVEAIRQLRKRWPKLMVIVLTASEEERKARDALDAGANGYVLKHGSKSTLIAAIKSV 125

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +G+  +   L    ++A           V  G    LT RE + L  I EGK + +IA 
Sbjct: 126 GRGKFFIDPNLDAAKIVAL--------KGVENGDIPVLTHREKQVLKLIFEGKRNRDIAE 177

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L I   TV  +  +IMRK      +  + +A R  
Sbjct: 178 ALVIGLKTVETHRMNIMRKLDAHNVADLMKWAHRMG 213


>gi|297194264|ref|ZP_06911662.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720556|gb|EDY64464.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 11/158 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-------RYCSLTFDVARIR 141
            + +       +VL+    L  P    +   +     ++         +   T +     
Sbjct: 52  DIDMPGAFG-LDVLRTLRALPAPPVVAMLTALDRADHVERALRDGASGFLLKTTEPRLFV 110

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEG 200
             + LL   G I          +LA   A +          D   LT RE E LT I+ G
Sbjct: 111 DAVRLLAAGGVICTPP--GSAAVLARCTAGVPAPTPPRSSDDLAALTPREHEVLTLIAAG 168

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            ++ +IA  LG+   TV  +I ++ RK A  +R G  A
Sbjct: 169 LSNTDIATHLGMGVTTVKTHIGALKRKLAVTSRVGLAA 206


>gi|83646031|ref|YP_434466.1| LuxR family regulatory protein [Hahella chejuensis KCTC 2396]
 gi|83634074|gb|ABC30041.1| probable regulatory protein, luxR family [Hahella chejuensis KCTC
           2396]
          Length = 896

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G L  +        D        L+ RE + L  +  G ++ EIA  L  S  TV  ++
Sbjct: 813 VGRLIEHYGQDIDQDDDDSANLAALSKREKQVLDLLVTGMSNPEIADALCRSLGTVKIHV 872

Query: 222 ASIMRKTATKTRSGAI 237
            +I RK     R  AI
Sbjct: 873 HNIYRKLGAANRVAAI 888


>gi|89068113|ref|ZP_01155530.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola
           granulosus HTCC2516]
 gi|89046352|gb|EAR52409.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola
           granulosus HTCC2516]
          Length = 228

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E LT++++G     +A +L IS +T+  YI S   K      + A+A A    +
Sbjct: 148 LSPREIEALTYLAQGYGRGRVADVLSISEHTLRAYIESARFKLGAANTTHAVARAAMEGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|291442180|ref|ZP_06581570.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291345075|gb|EFE72031.1| response regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 230

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ +  ++EG  + +IA  L  S  T+ + I  +  +   + R+ A+AYA+R   
Sbjct: 170 LTPREVDVMRLVAEGFGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAYALREGY 229

Query: 246 V 246
           +
Sbjct: 230 I 230


>gi|291003997|ref|ZP_06561970.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 770

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 4/149 (2%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           ++E D       R   +   +  +L  ++     + + Y      V R+R  L     + 
Sbjct: 615 IAETDGRGEHAARLFGVLRSLSRSLGVSLRAYTHLADHY---DECVRRLRNALGERDYQA 671

Query: 152 RIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            +     L  E  L  A + ++             LT RE E    +++G ++ EIA  L
Sbjct: 672 LLDEGASLTLEDALHLAAEEDLRPDVRSAADDAPRLTRREREVAELVAQGMSNKEIAAKL 731

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAY 239
            I+  T  ++I  I+ K    TR+    +
Sbjct: 732 MIASRTAESHIEHILVKLGFTTRTQIATW 760


>gi|290960685|ref|YP_003491867.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260650211|emb|CBG73327.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 201

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 16/160 (10%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL     LS   +    L     L               A     +        R+   +
Sbjct: 56  DLPGLDGLSAAAQLAQQLPSCRTLILTSLGRPGTLRKALAAQVGGFLLKDAPPDRLAGAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R+I      ++ L A                +  LT RE E L   ++G  + 
Sbjct: 116 RDVAAGKRVIDP----QLALAAFD------------NGENPLTPRETEVLRMAADGAEAA 159

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +IA  L +S  TV NY+ +++ K   + R  AI  A  + 
Sbjct: 160 DIASRLFLSVGTVRNYLTTVVTKLNARNRVDAIRVARESG 199


>gi|260459364|ref|ZP_05807619.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034918|gb|EEW36174.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 219

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW----GKDF 184
            Y  +   V  ++ G +      +    + L     LA  ++    + D  +     +  
Sbjct: 99  GYGDVPMTVKAMKAGAIEFLT--KPFDDEELLSAIKLALERSKSALALDSEFQALKDRHT 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E +T +  G  + +I   LGIS  TV  +    MRK   ++ +  +  A R  
Sbjct: 157 SLSRREQEVMTLVVSGLLNKQIGFELGISEITVKAHRGQAMRKMQARSLAQLVHMAARLG 216

Query: 245 I 245
           I
Sbjct: 217 I 217


>gi|227511558|ref|ZP_03941607.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227085203|gb|EEI20515.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 202

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++    D  L+ +E+  L   ++G T+ EIA  L +S  TV NY+++I  K     R  A
Sbjct: 132 NMVNAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEA 191

Query: 237 IAYA 240
           +  A
Sbjct: 192 VNMA 195


>gi|134101185|ref|YP_001106846.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133913808|emb|CAM03921.1| protein kinase/transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 767

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 4/149 (2%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           ++E D       R   +   +  +L  ++     + + Y      V R+R  L     + 
Sbjct: 612 IAETDGRGEHAARLFGVLRSLSRSLGVSLRAYTHLADHY---DECVRRLRNALGERDYQA 668

Query: 152 RIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            +     L  E  L  A + ++             LT RE E    +++G ++ EIA  L
Sbjct: 669 LLDEGASLTLEDALHLAAEEDLRPDVRSAADDAPRLTRREREVAELVAQGMSNKEIAAKL 728

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAY 239
            I+  T  ++I  I+ K    TR+    +
Sbjct: 729 MIASRTAESHIEHILVKLGFTTRTQIATW 757


>gi|94314237|ref|YP_587446.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93358089|gb|ABF12177.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 247

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 40/120 (33%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                 +T    +      +  P     L D + E       Q                L
Sbjct: 123 GRGDVPMTVAAMKAGAVNFIAKPFRDQDLLDAVDEALQRDRAQREAEAQSRQLRDHFDTL 182

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TGRE E +   + G  + +IA  LGIS  TV  Y    MRK   +T +  +  A    +V
Sbjct: 183 TGREQEVMQLAARGLMNKQIADDLGISEATVKIYRGHAMRKMQARTFAELVIMAQSLGLV 242


>gi|300785799|ref|YP_003766090.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299795313|gb|ADJ45688.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 850

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 10/112 (8%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
            F +A  +IG +L+   G     DR           A   +S  V       LT RE   
Sbjct: 748 PFALAEPQIGHLLIDHSGGFGSLDRF----------AQAVRSRLVPHAPPSGLTDREQVV 797

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +   ++ DEIA  L +S NTV  ++ +I  K     R  A+  A    +
Sbjct: 798 LQRLPSQRSLDEIASDLTVSVNTVKTHVRAIYGKLGVNNRRSAVVVARHQGL 849


>gi|268322279|emb|CBH32801.1| putative regulatory gene [Streptomyces sp. C23201NS3]
          Length = 201

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT R++E L   + G    EIA  L +S  TV NY++S+  K   +TR  A+  A
Sbjct: 136 SPPPPLTERQLEILRLAAAGDGVPEIAARLHLSPGTVRNYLSSVTTKLNARTRMDAVRIA 195

Query: 241 VRNN 244
               
Sbjct: 196 ADAG 199


>gi|302877496|ref|YP_003846060.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302580285|gb|ADL54296.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 215

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 6/173 (3%)

Query: 77  IVSSDWPFDLVR-CMALSEKDKYYNVLQRPTELF--CPVFHTLPENITPPAGMDNRYCSL 133
           +V+     DLV   + +   +     +    + F   PV     ++          Y + 
Sbjct: 41  VVAQHPELDLVLLDLNMPGSEG-ARSVSYFHQRFPRIPVVVVSGDDALANMEKVMDYGAS 99

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
            F + +      +L    R++  +      +             +H    + LT R++E 
Sbjct: 100 GF-ICKSSTSHAMLAALKRVLSGEIYVPPEIFRQRSVQAVDKRSMHTNG-YGLTPRQMEV 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I  G ++ EIA    ++  TV  ++A++ +      R  A+  A R  +V
Sbjct: 158 LEHICAGMSNKEIASHTHLAEGTVKIHVAAVYQTLKVNGRLEAVRVAERLGLV 210


>gi|302553937|ref|ZP_07306279.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471555|gb|EFL34648.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 204

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   S+G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A    
Sbjct: 143 PLTDREREVLRAASDGSTNAELATALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVAREKG 202


>gi|254448074|ref|ZP_05061537.1| response regulator, NarL-family [gamma proteobacterium HTCC5015]
 gi|198262200|gb|EDY86482.1| response regulator, NarL-family [gamma proteobacterium HTCC5015]
          Length = 213

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT RE + L  I++G T  +   +LGISRNT   Y+  I RK    +R+ A   A 
Sbjct: 144 QNSPLTQREHDVLALIAKGYTVKKAGELLGISRNTCAGYVKDIYRKLQISSRAEATVEAS 203

Query: 242 RNNIV 246
           R  ++
Sbjct: 204 RLGLL 208


>gi|134103488|ref|YP_001109149.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005968|ref|ZP_06563941.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916111|emb|CAM06224.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 217

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 6/185 (3%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK-YYNVLQRPTELFCPVFHTLPENITPPA 124
            +    +    +V    P   V  + +   D        R T     +  T  E+     
Sbjct: 31  AEAADGRAAVDLVHRHRPDVAVLDIRMPVLDGLAATEQLRGTGTAVLIMTTFDEDDYITR 90

Query: 125 ---GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
              G  + +   T D   + +G+      G  +       +  +                
Sbjct: 91  ALHGGASGFLLKTGDPRELVLGVRAAADGGAYLSPPVARRV--IRDLGGPRLSREVAARN 148

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   L+ RE + L  +  G ++ EIA  + +   TV  Y+++I+     + R  A   A 
Sbjct: 149 RIEGLSERERQVLALVGAGLSNAEIARRVHVVEGTVKAYVSAILNHLGFRNRVQAAILAY 208

Query: 242 RNNIV 246
              +V
Sbjct: 209 EAGLV 213


>gi|91789940|ref|YP_550892.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91699165|gb|ABE45994.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 229

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA----NMFKSYDVHWGKDFELTGR 189
           T D+ R            + +  ++L E    A  Q        ++      +  +L+ R
Sbjct: 109 TVDMCRRAFKSGAAEFLEKPVDDEQLLEALQNAVRQHVKSRERRQTDQQARQRYAQLSER 168

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           E E L  I  G T+ EI   L +S  TV  + A++  K   ++ +  I 
Sbjct: 169 EREVLGLIVAGLTNKEIGRALAVSPRTVETHRANLFAKLEAESLAQLIR 217


>gi|116672032|ref|YP_832965.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116612141|gb|ABK04865.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 218

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 19/193 (9%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +    Q+L + V++  P   V  + +        +     +    +    P        
Sbjct: 31  CEAADGQELLACVAALQPDVAVVDIRMPPTFTTEGI-----QAATAIRQDQPGTGVLLLS 85

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA--------YQANMFKSYD 177
                 +    +     GL  L  +    + + +  +  +AA          A M     
Sbjct: 86  QYVETENAMQLLGNGAKGLGYLLKERVSDIDEFIDALHRVAAGGTAVDPELVARMVARPH 145

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK------ 231
               ++ EL+ RE + L  +++G+T+  I   L +   TV  +I SI  K   +      
Sbjct: 146 NGHQREDELSSRERDVLELMAQGRTNQAIGKTLFLGERTVEAHIRSIFLKLGLRPEPEDH 205

Query: 232 TRSGAIAYAVRNN 244
            R  A+   +R +
Sbjct: 206 RRVLAVLTYLRQH 218


>gi|326381413|ref|ZP_08203107.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326199660|gb|EGD56840.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 212

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    ++ G ++ EIA  L +S  TV  +I+ I  K     R           +
Sbjct: 152 LTDREREVAVCLARGASNAEIAAELYMSVATVKAHISHIFTKLDASNRVQVAIRMHDAGL 211


>gi|304406485|ref|ZP_07388141.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344543|gb|EFM10381.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 47/128 (36%), Gaps = 12/128 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L    +     D     LT  +     G +LL       L  RL  +         
Sbjct: 94  VVEGLAGGASGILLKDFTANKLTGALREAMRGELLLPASIAAKLAMRLRSV--------- 144

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +     G DF LT RE+E  T +   K + EIA  L I+  TV NYI+ I  K    
Sbjct: 145 ---TSPTFAGADFALTPREIEIATLLIAYKNNREIAEALFITEGTVKNYISVIYEKVGMN 201

Query: 232 TRSGAIAY 239
            R+  IA 
Sbjct: 202 DRAKVIAR 209


>gi|298387299|ref|ZP_06996852.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14]
 gi|298259968|gb|EFI02839.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14]
          Length = 203

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 36/74 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S +        L+ RE E +  + +G T+ EIA  L +S +TV  +  +I +K    +
Sbjct: 122 LASEEEELDNQETLSQREKEIVICVVKGMTNKEIAENLFLSIHTVITHRRNISKKLQIHS 181

Query: 233 RSGAIAYAVRNNIV 246
            +G   YA+ N +V
Sbjct: 182 AAGLTIYAIVNKLV 195


>gi|209696228|ref|YP_002264158.1| transcriptional regulator, LuxR response regulator receiver
           [Aliivibrio salmonicida LFI1238]
 gi|208010181|emb|CAQ80508.1| transcriptional regulator, LuxR response regulator receiver
           [Aliivibrio salmonicida LFI1238]
          Length = 209

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 35/66 (53%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++ D    +   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R
Sbjct: 138 QACDDLATRISSLTPQQYKVLGMLSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNR 197

Query: 234 SGAIAY 239
           + A+ +
Sbjct: 198 TQAVIF 203


>gi|194367747|ref|YP_002030357.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194350551|gb|ACF53674.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 221

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT ++   L  +  G+ + +IA  L +S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 ELTPQQFRVLQMLGAGRLNKQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|83721051|ref|YP_441647.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167580458|ref|ZP_02373332.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|257139656|ref|ZP_05587918.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83654876|gb|ABC38939.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 279

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|298373031|ref|ZP_06983021.1| transcriptional regulator, LuxR family [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298275935|gb|EFI17486.1| transcriptional regulator, LuxR family [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 188

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +     +  LT RE E L  I  G T+ EIA  L +S +T+  +  +I  K    T +G 
Sbjct: 117 NQSSSPEEALTIREQEVLVRIVNGLTNKEIADNLNLSVHTITTHRRNISTKLQIHTVAGL 176

Query: 237 IAYAVRNNIV 246
             YA+ N ++
Sbjct: 177 TIYAISNKMI 186


>gi|221133926|ref|ZP_03560231.1| putative transcriptional regulator, LuxR family protein [Glaciecola
           sp. HTCC2999]
          Length = 77

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE +    I++G T+  I   L IS  TV  + A+I +K   K R+G I+
Sbjct: 8   LSPREFQVANHITKGMTNRAIGDTLFISERTVKFHAANIYKKLNLKNRAGLIS 60


>gi|313158965|gb|EFR58342.1| transcriptional regulator, LuxR family [Alistipes sp. HGB5]
          Length = 251

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  IS GK S EIA++L IS +TVN +  +I+ K    T   A   A   ++
Sbjct: 190 LSDREKEVLQLISAGKMSKEIAILLSISIHTVNRHRQNILSKLKADTSIEACRIAEYMHL 249

Query: 246 V 246
           +
Sbjct: 250 I 250


>gi|284993172|ref|YP_003411727.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066418|gb|ADB77356.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 218

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E   L  I EG T+ +I   +G++  TV NY + ++ K   + R+ A   A
Sbjct: 156 LTEQERTVLRLIGEGLTNRQIGARMGLAEKTVKNYTSHLLAKLGLERRTQAAILA 210


>gi|169634739|ref|YP_001708475.1| putative two-component response regulator [Acinetobacter baumannii
           SDF]
 gi|169153531|emb|CAP02698.1| putative two-component response regulator [Acinetobacter baumannii]
          Length = 218

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 147 LFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSD 204
           +    R +L   +W    L +    +   + +    +  + LT ++   L  ++EG  + 
Sbjct: 111 IGEAIRQVLDGEIWLPPNLPSNINLDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 171 QIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|327405227|ref|YP_004346065.1| LuxR family transcriptional regulator [Fluviicola taffensis DSM
           16823]
 gi|327320735|gb|AEA45227.1| transcriptional regulator, LuxR family [Fluviicola taffensis DSM
           16823]
          Length = 258

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 4/115 (3%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG----KDFEL 186
             L FD  +  +  + +  +   + +  +  +  +       F +YD        +  + 
Sbjct: 139 LILEFDDNKNFVTSLGIHTEISHLKQQGIPILSFIGLNGNPSFYNYDQLEDHSSLEKPDF 198

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T RE+E L  I   KTS  I+  L +S +TVN++  +I++K+   + +  +  A+
Sbjct: 199 TKRELEILRLIIASKTSAIISEELFVSIHTVNSHRKNILKKSNCASVTELLVKAI 253


>gi|291008910|ref|ZP_06566883.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 199

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+   Q    +  + H      +T RE++ L  +SEG    +IA  L  S  TV N +  
Sbjct: 117 LIEQVQRVCREVLEPHDLSFSGVTNREIDVLGLVSEGNELKDIAQKLHFSERTVKNILYQ 176

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
              +     R+ A++YA+R+ ++
Sbjct: 177 FTSRFNLHNRAHAVSYAIRSGLI 199


>gi|237880801|gb|ACR33059.1| response regulator [Actinoplanes garbadinensis]
          Length = 220

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            T RE +    I  G  + EIA  L ++  TV  ++  ++ K   + R   + +A RN 
Sbjct: 159 FTARERDVFDLIVAGANNAEIAARLHLAEVTVKTHVGRVLAKLGVRDRLNVVVWAYRNG 217


>gi|227819439|ref|YP_002823410.1| two-component system response regulator [Sinorhizobium fredii
           NGR234]
 gi|227338438|gb|ACP22657.1| putative two-component system response regulator [Sinorhizobium
           fredii NGR234]
          Length = 226

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L+A    + K          +LT RE+E     +EG  S EIA  LGI+  TV  ++ S+
Sbjct: 143 LSAAIERIGKRDVERRSVMQKLTPRELEISRLAAEGLRSREIAARLGITPGTVKLHLHSV 202

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
             K    TR      + R  +
Sbjct: 203 YSKLDITTRVELANISQRLQL 223


>gi|326442335|ref|ZP_08217069.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 203

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            + +   RL EI       +         D     D  LT RE E L   ++G    EIA
Sbjct: 105 PKTLSAQRLAEIIRAVHAGSRYVDPELAADAISAGDSPLTAREAEVLALAADGAPIAEIA 164

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
               +S+ TV NY++S + K   + R  A+  A    
Sbjct: 165 ERASLSQGTVRNYLSSAVSKLGAENRHTAVRLARHRG 201


>gi|254521736|ref|ZP_05133791.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219719327|gb|EED37852.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 221

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT ++   L  +  G+ + +IA  L +S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 ELTPQQFRVLQMLGAGRLNKQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|167623909|ref|YP_001674203.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167353931|gb|ABZ76544.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 222

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ + L  I+EG ++ EIA  + +S  TV  + A IM +      +G + +A+R  +
Sbjct: 154 LTSRQRQILQLIAEGYSTREIAERMSVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRCKL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|297585551|ref|YP_003701331.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297144008|gb|ADI00766.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 199

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L + + +I  +   +    +  D  +  +  LT RE E +  ++EG ++  IA  L ++ 
Sbjct: 109 LAEAIRQI--MQGRRIFAPELIDEVYRSENPLTEREKEVMKLMAEGMSTKLIAETLFLTN 166

Query: 215 NTVNNYIASIMRKTATKTRSGAI 237
            TV NYI++I+ K     R  AI
Sbjct: 167 GTVRNYISTILDKLEVDNRIEAI 189


>gi|256376044|ref|YP_003099704.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920347|gb|ACU35858.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +E   L  I +G T+ +IA  + ++  TV NY++ ++ K   + R+ A   A +  
Sbjct: 151 LTEQERTVLDLIGQGMTNRQIAESMFLAEKTVKNYVSHLLAKLGLERRTQAAVLASKLR 209


>gi|221639002|ref|YP_002525264.1| LuxR family two component transcriptional regulator [Rhodobacter
           sphaeroides KD131]
 gi|221159783|gb|ACM00763.1| Two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides KD131]
          Length = 275

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +++  L  I +G+ +  I+  L I+  TV  +IA+IM K   + R+ A   A +  I
Sbjct: 213 LTPQQMNILRLICQGRPNKLISYELSIAEATVKTHIAAIMTKINVRNRTQAALLASKARI 272


>gi|270263820|ref|ZP_06192088.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042013|gb|EFA15109.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 215

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT +E E +  + EG ++  IA+ LGIS +TV  ++ +I  KT    R+  +A
Sbjct: 156 LTAKEQEIVNMVREGASNKRIALKLGISLSTVKTHMRNIFAKTEVANRTELVA 208


>gi|255606123|ref|XP_002538507.1| Response regulator gacA, putative [Ricinus communis]
 gi|223511807|gb|EEF23876.1| Response regulator gacA, putative [Ricinus communis]
          Length = 268

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   L  +      +  +   +I L         ++ +       
Sbjct: 154 AGAKGYLAKNSLAEELVDALQAILNGKTYLSPEIARKIAL---------QTLEDKGDPMQ 204

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E    ++EGK +++IA  L +S  TV NY  +I +K    +    +  A+R+ 
Sbjct: 205 QLSAREFEIFRLLAEGKETEDIAQALKLSVKTVANYQTTIKQKLGITSPVEMVRLAIRHG 264

Query: 245 IV 246
           ++
Sbjct: 265 VI 266


>gi|167562212|ref|ZP_02355128.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167569457|ref|ZP_02362331.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 279

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 10/171 (5%)

Query: 78  VSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +     FDL  V    +      + + +                    A  D     +  
Sbjct: 41  LIKQQSFDLIAVDWQDIKRLGDLHALCRACAPTPVAALTDDASPEHAQALFDAGVLGVIP 100

Query: 136 DVAR-----IRIGLMLLFPKGRIILRDRLWEIGLLAAYQ---ANMFKSYDVHWGKDFELT 187
              R       + ++LL           L E    A      A + +           L+
Sbjct: 101 RSTRPHLIVRALEMVLLGGHYIPPSALNLTEPAARARDGRVDAIVSQLPRRKRSACSLLS 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 161 PRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|27364647|ref|NP_760175.1| LuxR family transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|320155042|ref|YP_004187421.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
 gi|27360792|gb|AAO09702.1| Transcriptional regulator, LuxR family [Vibrio vulnificus CMCP6]
 gi|319930354|gb|ADV85218.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
          Length = 211

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|331695555|ref|YP_004331794.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950244|gb|AEA23941.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 940

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E    +++G ++ +IA  + IS  TV +++A I+ K     R+   A+ V  
Sbjct: 881 LSPRETEIAGLVADGLSNRDIAAAVHISERTVESHVAHILAKLGFSRRTQIAAWVVAR 938


>gi|303241329|ref|ZP_07327834.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302591168|gb|EFL60911.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 216

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y     +   +++ +  ++    +I ++ L  +        +          ++   
Sbjct: 98  ADGYILKDINPEMLKLAIKCVYSGIPVIHKNALAILTKNVG-TTDSNDCKHESVKQNITF 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T +E+E +  I++GK++ +IA  + +S+  + N I  I  KT    R+    YA++N+IV
Sbjct: 157 TSKELEIIDLIAKGKSNTDIAKEVFLSKGRIANIITRIFEKTRLNDRTELAVYAIKNHIV 216


>gi|295093945|emb|CBK83036.1| ATP-dependent transcriptional regulator [Coprococcus sp. ART55/1]
          Length = 813

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +L+      L   +EG +  +IA  L +S   V  ++  + RK     ++GA+  A  
Sbjct: 750 DVQLSETATAILKLQAEGLSRQKIADRLNMSEANVKYHLNQVYRKLGVTDKAGAVREASN 809

Query: 243 NNIV 246
             ++
Sbjct: 810 RGLI 813


>gi|261211265|ref|ZP_05925554.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
 gi|262190930|ref|ZP_06049145.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
 gi|260839766|gb|EEX66377.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
 gi|262033197|gb|EEY51720.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
          Length = 209

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|164686850|ref|ZP_02210878.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM
           16795]
 gi|164604240|gb|EDQ97705.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM
           16795]
          Length = 826

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 39/80 (48%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           ++ + EI +L        K       K  EL+ RE+E     ++G T++EIA  L +S N
Sbjct: 736 KEAIDEIRILQKAYEEFLKFVKKEKSKVVELSERELEVANLAAQGFTNNEIAKKLFVSVN 795

Query: 216 TVNNYIASIMRKTATKTRSG 235
           TV   + ++ +K   K+R  
Sbjct: 796 TVKTILKAVFKKLCIKSRQE 815


>gi|161520367|ref|YP_001583794.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344417|gb|ABX17502.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
          Length = 264

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 128 NRYCSLTFD---VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             +  L FD    AR   G    F  G I    RL  +   A       +        + 
Sbjct: 147 GAFSLLRFDTRGAARGGDGASTRFAPGEIDALARLQPLAEAALTPLLRTRRGIHRIECEA 206

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LT RE +    + +G+++ EIA  L + + T+  ++  + RK     R+  +
Sbjct: 207 RLTYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 259


>gi|315445794|ref|YP_004078673.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315264097|gb|ADU00839.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 281

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 4/110 (3%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +  +   L LL       L+DRL     LA   +          G    L  RE++ L  
Sbjct: 175 IREVHAELRLLAVTAPPPLQDRLR---ALADTLSGTGTEPGAGPGA-ATLAPRELDVLAQ 230

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G T+ E A  L +   TV +Y+ S   K  T+TR  +++ A R +++
Sbjct: 231 VALGCTNAEAAQRLSLKPETVKSYLRSAATKLGTRTRYESVSKARRLHLI 280


>gi|283834157|ref|ZP_06353898.1| DNA-binding response regulator, LuxR family [Citrobacter youngae
           ATCC 29220]
 gi|291070307|gb|EFE08416.1| DNA-binding response regulator, LuxR family [Citrobacter youngae
           ATCC 29220]
          Length = 210

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 16/171 (9%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    V     ++ +  AG       N + S  
Sbjct: 48  YPVDLVILDIELPGSDGFTLLKRIKSLQEKTRVLFLSSKSESFYAGRAIRAGANGFVSKR 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D+  I   + ++         D L  I  + A +  +          D  L+ REV  L
Sbjct: 108 KDLNDIYNAVKMILSGYSFFPSDTLNFINNINAQKGVL---------NDMPLSNREVTVL 158

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +++ G ++ EIA  L +S  T++ + A+I  K    T    I YA  + +
Sbjct: 159 RYLANGLSNKEIAEQLLLSNKTISAHKANIYSKLGLHTIVELIDYAKMHEL 209


>gi|206560098|ref|YP_002230862.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198036139|emb|CAR52034.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 897

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E   L  ++   ++ EIAV L +   TV  ++ ++  K    +R  A+  A+   +
Sbjct: 833 LTPKERAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 892

Query: 246 V 246
           +
Sbjct: 893 L 893


>gi|182438634|ref|YP_001826353.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467150|dbj|BAG21670.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 272

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 8/176 (4%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHT---LPENI 120
            +    ++   +V +  P   V  + +   +       ++R       V  T     + I
Sbjct: 74  AEAADGREAVELVRAHRPHVAVLDVRMPGTNGLDAAAEIRRTLPATGVVMLTTFGEDDYI 133

Query: 121 TPPAGM-DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYD 177
               G     +   + +   +  G+  +      +       +   L +     +    D
Sbjct: 134 LRALGCGAAGFLIKSGEPEELVAGVRAVAEGAAYLSPKVAARVVAHLASTGAGALAGRRD 193

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
               +   LT RE E L+ +  G ++ +IA  L +   TV  +++S++ +     R
Sbjct: 194 AARDRVAGLTPREREVLSHLGGGLSNGQIARRLHLVEGTVKAHVSSVLARLGVDNR 249


>gi|320533369|ref|ZP_08034060.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134411|gb|EFW26668.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 166

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 3/140 (2%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             ++   EL   V   LP         D+         A  R  L+       I    R 
Sbjct: 18  TGIELMQELRDSVPQALP---IVLTSFDDDEALAEALAAGARAYLLKTVHGAEISDVVRA 74

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              G +   +  + +    H     +LT  E + L  I +G ++ EI   LG++  TV N
Sbjct: 75  VASGRVLLDERTVTRRRADHDDPTADLTNAERKVLDLIGDGLSNREIGERLGVAEKTVKN 134

Query: 220 YIASIMRKTATKTRSGAIAY 239
           +I S++ K   + R+   A+
Sbjct: 135 HITSLLAKMGLQRRTQVAAW 154


>gi|326777702|ref|ZP_08236967.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326658035|gb|EGE42881.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 226

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 5/139 (3%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    F              + +     D   +  G+  +   G  +       +  +A 
Sbjct: 88  IMLTTFGQDEYVTRALEEGADGFLLKADDPRELLNGVRAVGAGGAYLSARVAGRV--IAG 145

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +A+          +   LT RE E L  +  G ++ EIA  L +   TV  ++++++ K
Sbjct: 146 MRAHRAAHPHRSLAR---LTEREREVLAGLGAGLSNAEIASRLHLVEGTVKAHVSAVLAK 202

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R  A   A   ++V
Sbjct: 203 LGARNRVEAAIAAYEADLV 221


>gi|260779547|ref|ZP_05888437.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604356|gb|EEX30660.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 211

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|240173083|ref|ZP_04751741.1| LuxR family transcriptional regulator [Mycobacterium kansasii ATCC
            12478]
          Length = 1102

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 1043 LTPAELDVVRLVREGLGNKDIAGRLFLSPRTVQAHLTHVYTKLGLTSRVQLAQEAARR 1100


>gi|297560727|ref|YP_003679701.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845175|gb|ADH67195.1| transcriptional regulator, LuxR family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 248

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 37/88 (42%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           + R R++    L    A   +      G    LT RE + L  ++ G  + EIA  L IS
Sbjct: 147 LERGRVYLSPGLVDRAAAHGRRLHGVPGPATRLTERERQTLALMARGLENKEIAAQLRIS 206

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +     +A ++ K     R+ A+  A+
Sbjct: 207 LHGAKRNVAQVLTKLDCTNRTMAVVKAM 234


>gi|254440333|ref|ZP_05053827.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198255779|gb|EDY80093.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 220

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +LT RE++ L  ++EGK++ EIA  L I   TV  ++ ++ RK     R+ A 
Sbjct: 143 KLTERELQMLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAA 195


>gi|169794379|ref|YP_001712172.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|184159817|ref|YP_001848156.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213159043|ref|YP_002321041.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215481936|ref|YP_002324118.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB307-0294]
 gi|239503857|ref|ZP_04663167.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB900]
 gi|260550220|ref|ZP_05824433.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260557934|ref|ZP_05830147.1| two-component system response regulator protein [Acinetobacter
           baumannii ATCC 19606]
 gi|301347127|ref|ZP_07227868.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB056]
 gi|301513592|ref|ZP_07238829.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB058]
 gi|301597105|ref|ZP_07242113.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB059]
 gi|332854806|ref|ZP_08435569.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332868936|ref|ZP_08438495.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|332872813|ref|ZP_08440778.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|169147306|emb|CAM85167.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|183211411|gb|ACC58809.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Acinetobacter baumannii ACICU]
 gi|193078647|gb|ABO13693.2| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
 gi|213058203|gb|ACJ43105.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213985989|gb|ACJ56288.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB307-0294]
 gi|260406748|gb|EEX00228.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260408725|gb|EEX02030.1| two-component system response regulator protein [Acinetobacter
           baumannii ATCC 19606]
 gi|322509730|gb|ADX05184.1| Putative two-component response regulator [Acinetobacter baumannii
           1656-2]
 gi|323519745|gb|ADX94126.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332727808|gb|EGJ59212.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332732979|gb|EGJ64181.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|332738974|gb|EGJ69836.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 216

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 147 LFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSD 204
           +    R +L   +W    L +    +   + +    +  + LT ++   L  ++EG  + 
Sbjct: 111 IGEAIRQVLDGEIWLPPNLPSNINLDPRAADETALAERIQSLTPQQFRVLMMVAEGLLNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 171 QIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|328880804|emb|CCA54043.1| hypothetical protein SVEN_0756 [Streptomyces venezuelae ATCC 10712]
          Length = 1065

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 147  LFPKGRIILRDRLWEIGLLAAYQANMFK------SYDVHWGKDFELTGREVECLTWISEG 200
            L+ +GR +  D      LLA    + +          V  G+   LT RE E    ++EG
Sbjct: 934  LWRRGRRLAAD--GGARLLADVADHTWPGTRPAPEGGVAGGRLAVLTPREREISVLVAEG 991

Query: 201  KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             T+  +A  L +S  TV +++A + RKT  +TR+G  +
Sbjct: 992  LTNQAVAERLCLSPRTVESHVARVYRKTGVETRAGLAS 1029


>gi|300728290|ref|ZP_07061658.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
 gi|299774525|gb|EFI71149.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
          Length = 322

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE + +  + +G T+ EI   L IS NTV  +  +I +K    + +G   YA+ 
Sbjct: 252 DEALSEREKDVIVALVQGMTNKEIGDHLCISINTVITHRRNIAKKLQIHSPAGLTIYAIV 311

Query: 243 NNIV 246
           NN++
Sbjct: 312 NNLI 315


>gi|257437613|ref|ZP_05613368.1| DNA-binding response regulator, LuxR family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199920|gb|EEU98204.1| DNA-binding response regulator, LuxR family [Faecalibacterium
           prausnitzii A2-165]
          Length = 210

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  + EG   +EIA  LGIS  TV  +++S++ KT    R+       + N
Sbjct: 142 QLTPREIEVLRLVCEGLEYEEIAAELGISSRTVKRFVSSLLEKTGYSNRTRLAIAVTKKN 201

Query: 245 IV 246
            +
Sbjct: 202 FI 203


>gi|256785392|ref|ZP_05523823.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769288|ref|ZP_06528666.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289699487|gb|EFD66916.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 204

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A    
Sbjct: 143 PLTDREREILRAAADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVARNKG 202


>gi|229490892|ref|ZP_04384727.1| protein kinase/ transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229322282|gb|EEN88068.1| protein kinase/ transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 801

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A                D  LT RE +    +++G T+  IA  L IS+ TV+ ++  I+
Sbjct: 714 ARALREQPPGGSPKSAADEVLTPREQQVAELVAQGLTNRAIADKLVISQRTVDGHVDHIL 773

Query: 226 RKTATKTRSGAIAYAVRN 243
            K    +R+   A+ ++ 
Sbjct: 774 NKLGYGSRTRIAAWVLQR 791


>gi|94497938|ref|ZP_01304503.1| probable two-component response regulator [Sphingomonas sp. SKA58]
 gi|94422666|gb|EAT07702.1| probable two-component response regulator [Sphingomonas sp. SKA58]
          Length = 260

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 20/185 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           LL + D F    LD           +    +   D    + QR   L   +     +   
Sbjct: 90  LLAKQDNFDLILLD-----------LNIPDVRRLDGLKLLRQRFPILPVVMVSGAFDRAI 138

Query: 122 PPAGMDNRYCSLTFDV--ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
               +                 +  +     G I L + + E+   +  + ++ +  D  
Sbjct: 139 VQDALAAGAAGFIPKSLKRSGIVDALQRIVAGEIYLPETMGEVPPPSVEEDDIVRRIDS- 197

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT ++   L  +  G+ + +IA  LG+S  T+  ++++I++K    +R+ A+  
Sbjct: 198 ------LTPQQKTVLGHLVRGRLNKQIAHDLGVSMTTIKAHVSAILQKLGVLSRTQAVIK 251

Query: 240 AVRNN 244
           A R  
Sbjct: 252 ANRVG 256


>gi|257792554|ref|YP_003183160.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257476451|gb|ACV56771.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 550

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            ++  LT RE E L +++ G+T   IA  L ++ NTV +++ +I  K    TR   
Sbjct: 489 AREGGLTEREAEILVYLARGRTKAYIADALFVTENTVRSHVRNIYSKLDVHTRQEL 544


>gi|148553756|ref|YP_001261338.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148498946|gb|ABQ67200.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 904

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 40/83 (48%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +A   A   +  +V       L  RE E L  I EG +S EIA  + +S  TV  Y  
Sbjct: 809 QAMARLPAPRGELIEVDDRSLPRLGPREREVLDCIVEGLSSKEIAWRMSLSVGTVLGYRK 868

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           S+ RK     RS AI+YA ++NI
Sbjct: 869 SLYRKIGVNCRSAAISYARQSNI 891


>gi|157962120|ref|YP_001502154.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157847120|gb|ABV87619.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 221

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ + L  I+EG ++ EIA+ + +S  TV  + A IM +      +G + +A+R+ +
Sbjct: 154 LTSRQRQILQLIAEGYSTREIALRMNVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRSKL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|88798051|ref|ZP_01113638.1| Response regulator [Reinekea sp. MED297]
 gi|88779248|gb|EAR10436.1| Response regulator [Reinekea sp. MED297]
          Length = 200

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 7/168 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV-----ARI 140
           L+      E             LF  +     + +     +  RY  L   V        
Sbjct: 31  LLEASDFPETLSALAANNDIAILFLDIQIPGTKGLDGLKEIKARYPVLPVIVVSTVDHDA 90

Query: 141 RIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I  ML       I +     +    L +              +   LT R++E L  ++
Sbjct: 91  SIQQMLRLGADCFIAKSSPRAVMIDALQSVVNGERVVISARRDESITLTPRQLETLELLA 150

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G  + EIA  + IS  TV  Y++ ++       R+  +  A +   +
Sbjct: 151 LGLPNKEIASQMTISPATVREYVSDLLIAFDCDNRTQLVLKAHQLGFI 198


>gi|296111001|ref|YP_003621382.1| Response regulator (CheY-like receiver domain and
           HTH-typeDNA-binding domain) [Leuconostoc kimchii IMSNU
           11154]
 gi|295832532|gb|ADG40413.1| Response regulator (CheY-like receiver domain and
           HTH-typeDNA-binding domain) [Leuconostoc kimchii IMSNU
           11154]
          Length = 211

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F L   EVE L+ IS+G     IA+ L +S  T+ N++  +  K    +   AIA AVRN
Sbjct: 149 FNLNPTEVEILSAISQGSKIKNIALKLHLSERTIKNHLTVVYDKMNVSSGVEAIALAVRN 208

Query: 244 NIV 246
           +I+
Sbjct: 209 HII 211


>gi|294630195|ref|ZP_06708755.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833528|gb|EFF91877.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 207

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            + +   RL EI                 D     D  LT RE E L   ++G    EIA
Sbjct: 109 PKTVSAQRLAEIIRTVHAGNRYVDPELAADAISAGDSPLTAREAEVLELAADGAPVTEIA 168

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
               +S  TV NY++S + K   + R  A+  A    
Sbjct: 169 ERAALSAGTVRNYLSSAVTKLGAENRHAAVRLARERG 205


>gi|325923449|ref|ZP_08185108.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546071|gb|EGD17266.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 194

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 34/68 (50%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           N   +        + LT RE E    +S G ++ EIA  L I   TV N++ S++RKT  
Sbjct: 118 NRRATPPSPQPTMYRLTPREREVADLLSRGLSNKEIARDLRIELATVKNHVHSVLRKTDA 177

Query: 231 KTRSGAIA 238
           +TR  A+ 
Sbjct: 178 RTRLQAVV 185


>gi|308235093|ref|ZP_07665830.1| transcriptional regulator, LuxR family protein [Gardnerella
           vaginalis ATCC 14018]
 gi|311115228|ref|YP_003986449.1| hypothetical protein HMPREF0421_21344 [Gardnerella vaginalis ATCC
           14019]
 gi|310946722|gb|ADP39426.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 246

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244
           L  +E++ +  +++G T+++IA  LG+  NT+N +I  I +K     R  AI A+A   N
Sbjct: 159 LPPQELKIMDLLAKGYTTNQIASQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218


>gi|196228166|ref|ZP_03127033.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196227569|gb|EDY22072.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 14/170 (8%)

Query: 83  PFDLVRCMALSEKDK------YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + L   D       +  VL     L   VF    +         + Y   +  
Sbjct: 50  PEVILLDVGLPGMDGLQGIREFKAVLPDAAMLVLTVFEDDDKIFRAICAGASGYLLKSEP 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           + R+   +      G  +          +A     MF   +   GKD+ LT RE   L  
Sbjct: 110 MNRVAEAIEQALAGGSPMNP-------RVARRVLEMFSKLNPQ-GKDYGLTERETAVLEL 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EG    +IA  L ++++T +  +  I +K      + A++ A++  I+
Sbjct: 162 MVEGLGKKQIADRLDLNQHTTDYVMRCIYKKLHVNGMTAAVSMALKEGII 211


>gi|134099110|ref|YP_001104771.1| two component LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133911733|emb|CAM01846.1| two component transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 209

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L+   Q    +  + H      +T RE++ L  +SEG    +IA  L  S  TV N +  
Sbjct: 127 LIEQVQRVCREVLEPHDLSFSGVTNREIDVLGLVSEGNELKDIAQKLHFSERTVKNILYQ 186

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
              +     R+ A++YA+R+ ++
Sbjct: 187 FTSRFNLHNRAHAVSYAIRSGLI 209


>gi|327439322|dbj|BAK15687.1| DNA-binding HTH domain-containing protein [Solibacillus silvestris
           StLB046]
          Length = 73

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    + +  ++ EI+  LGIS  TV N+I++ ++K    +R+ AI   +R
Sbjct: 10  LTKREREIFELLIKDYSTREISTKLGISEKTVRNHISNTIQKLGVSSRTQAILELLR 66


>gi|301165031|emb|CBW24597.1| putative transcriptional regulator GerE, LuxR family [Bacteroides
           fragilis 638R]
          Length = 278

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K    A   A    +
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 246 V 246
           +
Sbjct: 277 L 277


>gi|261250453|ref|ZP_05943028.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
 gi|260939022|gb|EEX95009.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
          Length = 211

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|160896652|ref|YP_001562234.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160362236|gb|ABX33849.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 213

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 167 AYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
             Q+   +  D    + F +L+ RE E L  I +G T+ EI   L +S  TV  + A++ 
Sbjct: 129 HVQSRERQQADRDAQQRFAQLSAREREVLALIVQGLTNKEIGRSLELSPRTVETHRANLF 188

Query: 226 RKTATKTRSGAIAY 239
            K    + +  I  
Sbjct: 189 AKLEAPSLAQLIRR 202


>gi|238757839|ref|ZP_04619021.1| hypothetical protein yaldo0001_20240 [Yersinia aldovae ATCC 35236]
 gi|238703824|gb|EEP96359.1| hypothetical protein yaldo0001_20240 [Yersinia aldovae ATCC 35236]
          Length = 211

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I++G T+  I   L IS  TV  +  +IMRK      +  +  + R  +
Sbjct: 150 LTPRERQILRLIADGYTNRLIGERLCISVKTVETHRLNIMRKLNVHKVTELLNCSRRLGL 209


>gi|302552511|ref|ZP_07304853.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470129|gb|EFL33222.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 203

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            + +   RL EI                 D     D  LT RE E L   ++G    EIA
Sbjct: 105 PKTVSAQRLAEIIRTVHAGNRYVDPELAADAIAAGDSPLTVREAEVLELAADGAPVAEIA 164

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
               +S+ TV NY++S + K   + R  A+  A    
Sbjct: 165 ERAALSQGTVRNYLSSAVSKLGAENRHAAVRLARERG 201


>gi|228991572|ref|ZP_04151516.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768141|gb|EEM16760.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 201

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT RE+E L     G T+ EI   L ++  TV NY++S ++K   ++R  AI  A 
Sbjct: 137 EDNPLTAREMEILRMAKNGMTTREIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIAD 196

Query: 242 RNNIV 246
               +
Sbjct: 197 EKGWI 201


>gi|329947033|ref|ZP_08294445.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526844|gb|EGF53857.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 219

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 5/172 (2%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-----TPPAGMD 127
            LD +  +    + VR   L   D     LQ P      +   L E++           D
Sbjct: 36  GLDVVAEAGSRAEAVRRAELVRPDVILVDLQLPDGTGIELMQELRESVPQALPIVLTSFD 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +         A  R  L+       I    R    G +   +  + +    H     +LT
Sbjct: 96  DDEALAEALAAGARAYLLKTVHGAEISDVVRAVASGRVLLDERTVTRRRADHDDPTADLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 156 NAERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 207


>gi|319793244|ref|YP_004154884.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315595707|gb|ADU36773.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 229

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 2/135 (1%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQ 169
           +        +     D     L   +  +R G   + P    +++ R +        A  
Sbjct: 92  MVLAFEAGASGYLLKDGTEADLATHIRNLRAGGSPMSPVIARQLLRRWQTRADASQPAPA 151

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           +    +          L+ RE E L  +S G T  E+   +G+S +TV ++I +I  K  
Sbjct: 152 SPGASAARFSTVAPERLSPRESEVLGLVSRGFTYVEVGAQMGVSASTVQSHIRNIYGKLD 211

Query: 230 TKTRSGAIAYAVRNN 244
              +S A+  A    
Sbjct: 212 VHNKSEAVFEARNLG 226


>gi|269795786|ref|YP_003315241.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097971|gb|ACZ22407.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 219

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           +   + +     D  R+   +  +   G ++       I      + ++  + +    + 
Sbjct: 95  SAGASGFLDKGSDPRRLPALVRSVAAGGVVLSPAASRRI-----VEHHLGCADEAAVRRL 149

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             LT RE + L  ++ G ++ +I   L +SR TV +++++I+ K    +R  A   A R
Sbjct: 150 TSLTCRERQVLAHLATGASNVQIGAALHLSRGTVKDHVSAILAKLGVASRLEAALVADR 208


>gi|254389987|ref|ZP_05005209.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813922|ref|ZP_06772565.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703696|gb|EDY49508.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326521|gb|EFG08164.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 201

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            + +   RL EI       +         D     D  LT RE E L   ++G    EIA
Sbjct: 103 PKTLSAQRLAEIIRAVHAGSRYVDPELAADAISAGDSPLTAREAEVLALAADGAPIAEIA 162

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
               +S+ TV NY++S + K   + R  A+  A    
Sbjct: 163 ERASLSQGTVRNYLSSAVSKLGAENRHTAVRLARHRG 199


>gi|114798134|ref|YP_759953.1| DNA-binding response regulator FixJ [Hyphomonas neptunium ATCC
           15444]
 gi|114738308|gb|ABI76433.1| DNA-binding response regulator FixJ [Hyphomonas neptunium ATCC
           15444]
          Length = 205

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 33/69 (47%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D   G    LT RE E L  + +G+T+ EIA+ L IS  TV  + A++M K      S  
Sbjct: 134 DEARGLIENLTAREKEVLHGLVDGQTNKEIAISLDISPRTVEIHRANVMEKMGASNLSTV 193

Query: 237 IAYAVRNNI 245
           +  A    I
Sbjct: 194 LRIAFAAGI 202


>gi|116669051|ref|YP_829984.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116609160|gb|ABK01884.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 208

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 16/151 (10%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARI 140
            DL     +   +    + +R       VF T   +      +D     Y          
Sbjct: 55  MDLAMGPGMDGIEAIKQLRRRNARQAVLVFTTYDSDADIVRAVDAGAMGYLLKDAAPDE- 113

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                 +F   R  ++ R      +A+      ++ D        LT RE E L+ ++EG
Sbjct: 114 ------IFAAVRGAVQGRSVMSAPVASRLFQQLRNPDE------ILTPREAELLSLLTEG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            ++ E+   L IS  TV  ++A I  K   +
Sbjct: 162 LSNRELGQRLFISEATVKTHLAHIYAKLGVE 192


>gi|325832726|ref|ZP_08165489.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|325485865|gb|EGC88326.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 527

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            ++  LT RE E L +++ G+T   IA  L ++ NTV +++ +I  K    TR   
Sbjct: 466 AREGGLTEREAEILVYLARGRTKAYIADALFVTENTVRSHVRNIYSKLDVHTRQEL 521


>gi|325068498|ref|ZP_08127171.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
          Length = 205

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 5/172 (2%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-----TPPAGMD 127
            LD +  +    + VR   L   D     LQ P      +   L +++           D
Sbjct: 22  GLDVVAEAGSRAEAVRRAELVRPDVILVDLQLPDGTGIELMQELRDSVPQALPIVLTSFD 81

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +         A  R  L+       I    R    G +   +  + +    H     +LT
Sbjct: 82  DDEALAEALAAGARAYLLKTVHGAEISDVVRAVASGRVLLDERTVTRRRADHDDPTADLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 142 NAERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 193


>gi|260459742|ref|ZP_05807996.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034544|gb|EEW35801.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 227

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 5/159 (3%)

Query: 83  PFDL-VRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           PFDL +  +++ +   +  +LQ R      PV                 Y +  F     
Sbjct: 54  PFDLALLDLSMPDVHGFDGLLQLRTRYPRLPVVIVSGYEEPRIISEALSYGAAGFIPKSA 113

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISE 199
           R     L    R ++   ++         A+   S      +   +LT +++  L  + +
Sbjct: 114 RKS--DLAAAIRSVMDGAIYVPQTYEGQPADADSSDRADMVQRLSKLTPQQLRVLQMLRQ 171

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           G  + +IA  L +   TV  +++ I+RK    +R+ A+ 
Sbjct: 172 GLLNKQIAYELQVGETTVKAHVSEILRKLNVYSRTQAVI 210


>gi|228997588|ref|ZP_04157200.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228762140|gb|EEM11074.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 201

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT REVE L  +  G T+ EI   L ++  TV NY++S ++K   ++R  AI  A 
Sbjct: 137 EDNPLTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIAD 196

Query: 242 RNNIV 246
               +
Sbjct: 197 EKGWI 201


>gi|78066308|ref|YP_369077.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383]
 gi|77967053|gb|ABB08433.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. 383]
          Length = 900

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E   L  ++   ++ EIAV L +   TV  ++ ++  K    +R  A+  A+   +
Sbjct: 836 LTPKERAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 895

Query: 246 V 246
           +
Sbjct: 896 L 896


>gi|146277969|ref|YP_001168128.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556210|gb|ABP70823.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 236

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +++  L  I +G+ +  I+  L I+  TV  +IA+IM K   + R+ A   A +  I
Sbjct: 174 LTPQQMNILRLICQGRPNKLISYELSIAEATVKTHIAAIMSKINVRNRTQAALLASKARI 233


>gi|317488846|ref|ZP_07947376.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911920|gb|EFV33499.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 503

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            ++  LT RE E L +++ G+T   IA  L ++ NTV +++ +I  K    TR   
Sbjct: 442 AREGGLTEREAEILVYLARGRTKAYIADALFVTENTVRSHVRNIYSKLDVHTRQEL 497


>gi|312195201|ref|YP_004015262.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226537|gb|ADP79392.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 232

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE + L   +E  T+ +IA  L ++  TV  ++ +I  K    +R  AI  AV 
Sbjct: 148 EQPLSRRERDVLELAAEAMTNIQIASRLSLTEATVKRHMHNIFGKLHATSRIDAINKAVA 207

Query: 243 NNIV 246
             ++
Sbjct: 208 ARLI 211


>gi|265767479|ref|ZP_06095145.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16]
 gi|263252784|gb|EEZ24296.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16]
          Length = 278

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K    A   A    +
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 246 V 246
           +
Sbjct: 277 L 277


>gi|255011592|ref|ZP_05283718.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 278

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K    A   A    +
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 246 V 246
           +
Sbjct: 277 L 277


>gi|229009028|ref|ZP_04166367.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228752198|gb|EEM01887.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 201

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT REVE L  +  G T+ EI   L ++  TV NY++S ++K   ++R  AI  A 
Sbjct: 137 EDNPLTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIAD 196

Query: 242 RNNIV 246
               +
Sbjct: 197 EKGWI 201


>gi|153006395|ref|YP_001380720.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029968|gb|ABS27736.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5]
          Length = 176

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E    +++G  S E+A  LGI+  TV +++ +I  K   + R       V++
Sbjct: 119 LTQREREVALLVADGLRSREVAERLGIASQTVKSHLKTIFDKLGVRNRVELARRLVQH 176


>gi|87199258|ref|YP_496515.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134939|gb|ABD25681.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 208

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 17/190 (8%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--FCPVFHTL 116
           + F +V      E+ LD+I + D P  ++  + +   +     L+   E     PV    
Sbjct: 24  TRFSVVATTASGEETLDAIKTHD-PAVVLLDINMPGMNG-VQALEALRERGDKRPVVLLT 81

Query: 117 PE-----NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            E      I+      +   S       +   L  +    + I  + L     L+    +
Sbjct: 82  AEINDRQLISVMRAGVDGIVSKDGAEEGLVEVLEKVHAGQKAIEPNFLQRALDLSLRPDS 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                        +L  RE +    ++ G  + +I   LGI   TV  Y+ ++ +K    
Sbjct: 142 QGPLA--------KLNPRERKIAALVARGMRNRDIGAELGIGEGTVKVYLHTMYQKLGID 193

Query: 232 TRSGAIAYAV 241
            R+     AV
Sbjct: 194 NRTELALLAV 203


>gi|49078420|gb|AAT49783.1| PA3604 [synthetic construct]
          Length = 218

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  TV  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYDLNVSEATVKAHVTAIFRKLNVRTRTQAA 204


>gi|119385084|ref|YP_916140.1| two component LuxR family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119374851|gb|ABL70444.1| two component transcriptional regulator, LuxR family [Paracoccus
           denitrificans PD1222]
          Length = 236

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +   LT ++++ L  I +GK + EI+  L I+  TV  +I +IM K   + R+ A+  A
Sbjct: 169 RFATLTPQQMKILRLICQGKANKEISYELSIAEATVKTHITAIMSKINARRRTQAVLLA 227


>gi|315604390|ref|ZP_07879456.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314096|gb|EFU62147.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 218

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 7/175 (4%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN------ITPPA 124
           +  L+ +  +    D VR   L   D     LQ P      + + L  +      +   +
Sbjct: 34  DDALEVVAEAGSVADAVRRADLVRPDVILVDLQLPDGTGIDIMNRLRASHPQILPVVLTS 93

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             D+   + + +       L  +       +   + +  +L   +    +  D H     
Sbjct: 94  FDDDEALAESLEAGARAYILKTVRGAEITDVIKAVADGRVLLDERTLTRRRVD-HEDPTA 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 153 DLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAAW 207


>gi|297562541|ref|YP_003681515.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846989|gb|ADH69009.1| transcriptional regulator, LuxR family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 818

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 31/68 (45%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +           LT RE E      EG ++ EIA  L IS  T   +IA+I RK +  +R
Sbjct: 746 RPQSSGPSGPDSLTPREREVAELAEEGLSNREIAERLTISHATAARHIANIFRKLSISSR 805

Query: 234 SGAIAYAV 241
           +    +AV
Sbjct: 806 TQLTGWAV 813


>gi|257792428|ref|YP_003183034.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257476325|gb|ACV56645.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 535

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + +  + + LT RE E L  ++EG++S  IA  L +S NTV +Y+ +I +K    ++   
Sbjct: 469 EAYVRERYGLTNREAEVLMLLAEGRSSSYIAGELVLSDNTVRSYVKNIYQKLDVHSKQDV 528

Query: 237 I--AYAV 241
           I    A+
Sbjct: 529 IDFVKAL 535


>gi|167551640|ref|ZP_02345394.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205323615|gb|EDZ11454.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 212

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L     ++ +  +      +  +   L    +LA   A+              LT RE +
Sbjct: 105 LKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELNADTTN--------HQLLTLRERQ 156

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I EG T+  I+  L IS  TV  +  ++MRK      +  + YA R  ++
Sbjct: 157 VLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNYARRMRLI 210


>gi|294141034|ref|YP_003557012.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293327503|dbj|BAJ02234.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 214

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE + L  I EG+ + +IA  L I   TV  +  ++MRK      +  I +A R
Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELIHWAQR 211


>gi|161521623|ref|YP_001585050.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160345673|gb|ABX18758.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
          Length = 241

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 15/161 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           + P  LV  + + EK  +    +        PV         P              V  
Sbjct: 79  NLPACLVLDVRMPEKSGFDVQAELNARGATLPVIFVSGHGDIP------------MSVRA 126

Query: 140 IRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           ++ G +    K     +  +R+     LA  +    + +     +   LT RE E L  +
Sbjct: 127 LQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHVADQRHRELRERLAALTAREKEVLQGV 186

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK S +IA  L IS  TV+ + ASI  K    + +  + 
Sbjct: 187 VDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAALVR 227


>gi|56695286|ref|YP_165634.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
 gi|56677023|gb|AAV93689.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
          Length = 239

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 21/232 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L  +               L + +   H ++  W    +   D    + +P        
Sbjct: 10  ILEDLDATSALEDLERVTIKLRDTLEIDH-IVYHWV---DSAGDQYGCATYPKAWQERYL 65

Query: 92  LSEKDKYYNVLQRPTELFCPV----------FHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +   V+    + F PV                      G+ N+  S+       +
Sbjct: 66  ERNYHRIDPVILGCFQRFHPVDWKRLDWSGKVAKAFLQDALKHGVGNQGYSIPIRGPNGQ 125

Query: 142 IGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFE--LTGREVECL 194
             L  +             EI      L+A +       ++     D    L+ REV+ +
Sbjct: 126 FALFTVNHVCDDQAWSEFTEIYGRDLILIAHFFNRKALEFERSRQPDQPRNLSPREVDAM 185

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T ++ G +  ++A  L IS +T+  YI S   K      + AIA A+   ++
Sbjct: 186 TLLALGYSRAQVAHSLSISEHTLRVYIESARFKLGALNTTHAIATAMSRGLI 237


>gi|326779283|ref|ZP_08238548.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326659616|gb|EGE44462.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 295

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 8/176 (4%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHT---LPENI 120
            +    ++   +V +  P   V  + +   +       ++R       V  T     + I
Sbjct: 97  AEAADGREAVELVRAHRPHVAVLDVRMPGTNGLDAAAEIRRTLPATGVVMLTTFGEDDYI 156

Query: 121 TPPAGM-DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYD 177
               G     +   + +   +  G+  +      +       +   L +     +    D
Sbjct: 157 LRALGCGAAGFLIKSGEPEELVAGVRAVADGAAYLSPKVAARVVAHLASTGAGALAGRRD 216

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
               +   LT RE E L+ +  G ++ +IA  L +   TV  +++S++ +     R
Sbjct: 217 AARDRVAGLTPREREVLSHLGGGLSNGQIARRLHLVEGTVKAHVSSVLARLGVDNR 272


>gi|269977244|ref|ZP_06184217.1| transcriptional regulatory protein DegU [Mobiluncus mulieris 28-1]
 gi|269934547|gb|EEZ91108.1| transcriptional regulatory protein DegU [Mobiluncus mulieris 28-1]
          Length = 189

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 10/185 (5%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF-------CPVFHTLPENIT 121
           F    +  +V    P  ++  + + + D      ++  E F          F        
Sbjct: 6   FDGHHVLDLVQKHHPDVVLMDVEMPKMDG-IEATRQIKERFPNLDVIMLTNFRHDTWLKE 64

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + + +     A +   +  +   GR +    L    L+A Y+   F     +  
Sbjct: 65  ALEAGADGFLTKDAPRADLSAAIKQVAKGGRFMSTKPLN--MLIANYEDPNFIPDPKYTA 122

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT  E +    + +GK + +IA  L    +T+  ++ SIM+K   ++R+  + ++ 
Sbjct: 123 GKQALTPAERDVWQEVLKGKGNAQIAKTLHSQESTIKTHMTSIMQKFQVRSRAELLVFSA 182

Query: 242 RNNIV 246
           +N  +
Sbjct: 183 KNGAI 187


>gi|254461366|ref|ZP_05074782.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium HTCC2083]
 gi|255262610|ref|ZP_05341952.1| DNA-binding response regulator, LuxR family [Thalassiobium sp.
           R2A62]
 gi|206677955|gb|EDZ42442.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium HTCC2083]
 gi|255104945|gb|EET47619.1| DNA-binding response regulator, LuxR family [Thalassiobium sp.
           R2A62]
          Length = 216

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 23/208 (11%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           M  LT+  G     L   ++     +  I   D  F LV   + +E      V++ P ++
Sbjct: 1   MQDLTDNTGPITVALADSNMLVLSAMSEIFDRDPRFSLVATASTAEDFL-GTVMRVPVQI 59

Query: 109 --------------FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
                            V    P         +N       D+ R  +         R  
Sbjct: 60  GIIDWNLPALGGQKLIEVMRDQPSAPRILVYGNN-----AGDMPRQALSAGAAGFTPRNG 114

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHW---GKDFELTGREVECLTWISEGKTSDEIAVILG 211
             + L +     A    +F   DV         +LT RE   L  +S G ++ ++A    
Sbjct: 115 PVEGLLDTCAAVAAGQMVFPFLDVRELQSDPIHQLTKREKALLEALSRGLSNRQLAAEFE 174

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IS NTV  +++++  K +  +R+ A+A+
Sbjct: 175 ISANTVKFHLSNLYEKLSVTSRTQAVAF 202


>gi|126651238|ref|ZP_01723448.1| probable transcriptional regulator, luxR family protein [Bacillus
           sp. B14905]
 gi|126592076|gb|EAZ86142.1| probable transcriptional regulator, luxR family protein [Bacillus
           sp. B14905]
          Length = 830

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE +    + +G T+ EIA  L +S  TV  Y+++I  K    +R+ AIA
Sbjct: 774 LTQREKDIYDLLVDGITNREIAKRLHLSEGTVRVYLSTIYSKLGVNSRAKAIA 826


>gi|115526486|ref|YP_783397.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520433|gb|ABJ08417.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisA53]
          Length = 247

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 39/59 (66%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT  ++E L++++ G ++ +IA   G+S NTV + +A++++K     R+ A  +AVRN
Sbjct: 179 DLTRPQIELLSYLANGLSNQQIAKERGMSINTVKSQVANVIQKLNVANRTQAALFAVRN 237


>gi|326773634|ref|ZP_08232917.1| DNA-binding response regulator, LuxR family [Actinomyces viscosus
           C505]
 gi|326636864|gb|EGE37767.1| DNA-binding response regulator, LuxR family [Actinomyces viscosus
           C505]
          Length = 217

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 5/172 (2%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-----TPPAGMD 127
            LD +  +    + VR   L   D     LQ P      +   L +++           D
Sbjct: 34  GLDVVAEAGSRAEAVRRAELVRPDVILVDLQLPDGTGIELMQELRDSVPQALPIVLTSFD 93

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +         A  R  L+       I    R    G +   +  + +    H     +LT
Sbjct: 94  DDEALAEALAAGARAYLLKTVHGAEISDVVRAVASGRVLLDERTVTRRRADHDDPTADLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 154 NAERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 205


>gi|270158837|ref|ZP_06187494.1| transcriptional regulator [Legionella longbeachae D-4968]
 gi|289166371|ref|YP_003456509.1| regulatory protein, luxR family [Legionella longbeachae NSW150]
 gi|269990862|gb|EEZ97116.1| transcriptional regulator [Legionella longbeachae D-4968]
 gi|288859544|emb|CBJ13509.1| putative regulatory protein, luxR family [Legionella longbeachae
           NSW150]
          Length = 228

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT ++++CL  + +G T  +I   L +S  TV +++ +   K     R+  IA A++
Sbjct: 161 NNQLTAKQIDCLYHLVKGLTIKQIGQKLNLSPRTVEDHLNAAKNKLHCHNRAELIAAALQ 220

Query: 243 NNIV 246
             ++
Sbjct: 221 IPLI 224


>gi|262204005|ref|YP_003275213.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262087352|gb|ACY23320.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 893

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           D  LT +E      +++G ++ E+A  L IS  TV  ++  I  K   ++R+  +A
Sbjct: 835 DVHLTPQEESVTALVAQGLSNKEVAAELFISTKTVQYHLTRIYAKLGLRSRAELVA 890


>gi|170750849|ref|YP_001757109.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170752017|ref|YP_001758277.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657371|gb|ACB26426.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658539|gb|ACB27594.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 486

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 4/167 (2%)

Query: 82  WPFDLVRCM--ALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           W  D  R    A  E+  Y   ++             L                +  D+ 
Sbjct: 312 WVADKQRLQVEAALERQGYVLGVEVCLRHESGANLDCLVSAERITINETAFVLLVLQDIT 371

Query: 139 RIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +     LF     ++ D  W   GL+           +        LT RE + L  I
Sbjct: 372 ERKHTERELFDAIETVMADTSWFSRGLIEKLANLRRPGREAGDAAAPNLTVRERQILNLI 431

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             G + D IA  LG+SRNTV N+ A++ RK     RS A+ +   N 
Sbjct: 432 CSGLSDDAIARKLGLSRNTVRNHGAALYRKIGIHKRSEAVVWGRENG 478


>gi|167836083|ref|ZP_02462966.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 279

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|167618566|ref|ZP_02387197.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
          Length = 279

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+A
Sbjct: 159 LSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 211


>gi|160900247|ref|YP_001565829.1| ATP-dependent transcription regulator LuxR [Delftia acidovorans
           SPH-1]
 gi|160365831|gb|ABX37444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Delftia acidovorans SPH-1]
          Length = 924

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E+  L  ++ G ++  +A  L +S +TV  ++ SI  K   ++R+ A+A A    
Sbjct: 862 PLTRKELRVLELLASGYSNAAMAEKLFVSDSTVRTHLRSINLKLGARSRTQAVALARELR 921

Query: 245 IV 246
           ++
Sbjct: 922 VL 923


>gi|118469421|ref|YP_888705.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118170708|gb|ABK71604.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 759

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D H  +D  LT +E+E L  ++   +  +I   L +S NTV  +  +I RK     R+ 
Sbjct: 691 NDEHIAED--LTSKELEVLRLLATRLSRRDIGQRLYVSLNTVKTHQRAIYRKLGVDNRNS 748

Query: 236 AIAYAVRNNIV 246
           A+A      ++
Sbjct: 749 AVARGRELGLL 759


>gi|318060702|ref|ZP_07979425.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318075493|ref|ZP_07982825.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 222

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 70/224 (31%), Gaps = 10/224 (4%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P+R     R++  +   S    +  +    GA    +       E+ L     +  P  +
Sbjct: 4   PSRPPRPLRVLVAEDHASVRAGLVLILR--GAPGIEVAGEAADGEEALAR-ARALRPDVV 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----AGMDNRYCSLTFDVARIR 141
           +  + +   D          E    V      ++              +   T +   + 
Sbjct: 61  LMDVRMPRLDGVAATRAIVAEGLADVLVLTTFDLDAYVFGALRAGAAGFLLKTAEAGELV 120

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     ++         LLA +                 LT RE E L+ + EG 
Sbjct: 121 AAVRTVAAGDGVVDTAVTRR--LLAEFARGGTGRERPAPEGLARLTPREREVLSCLGEGL 178

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + EIA  + ++  TV ++++ ++ K   + R  A   A    +
Sbjct: 179 GNAEIAERIDVAEGTVKSHVSRLLAKLELRNRLQASLLARDLGL 222


>gi|158315590|ref|YP_001508098.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158317163|ref|YP_001509671.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158110995|gb|ABW13192.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec]
 gi|158112568|gb|ABW14765.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec]
          Length = 952

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           RL   G LA     +         +   LT RE E    + +  ++ EIA  L +S  T+
Sbjct: 869 RLDMPGPLAR-ADQLLADLAAARRETDPLTAREHEVAALVVQAMSNREIAARLVLSERTI 927

Query: 218 NNYIASIMRKTATKTRSGAIAY 239
            +++ SI+ K     R+  +A 
Sbjct: 928 ESHVRSILAKLGYTNRTELVAR 949


>gi|313888654|ref|ZP_07822319.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845383|gb|EFR32779.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 195

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +  G T  EIA  L IS  T+ N++A+I  K   K    A   A+   
Sbjct: 130 PLTKREEEILIEVLSGLTKKEIADKLYISERTLYNHLANIYAKLGAKNAIEAYKIALELG 189

Query: 245 IV 246
            +
Sbjct: 190 YI 191


>gi|260885201|ref|ZP_05734512.2| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
 gi|260853156|gb|EEX73025.1| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
          Length = 235

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTSDEIAVILGISR 214
           L  I  +A           +    + +    LT RE E L  +  G  + EIA  LG+S 
Sbjct: 139 LRSILQMAQAGHRHRPRPVLEAQGEVQRISPLTPRETEVLRLVVSGLLNKEIANRLGVSL 198

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            TV ++  ++  K   ++ S    YAV + I
Sbjct: 199 TTVISHRKNLTAKLGFRSVSALTIYAVTHGI 229


>gi|255264823|ref|ZP_05344165.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium
           sp. R2A62]
 gi|255107158|gb|EET49832.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium
           sp. R2A62]
          Length = 258

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REV+ +T+++ G +  ++A  L IS +T+  YI S   K      + A+A A+ + +
Sbjct: 175 LSPREVDAMTFLAMGYSRAQVANTLSISEHTLRAYIESARFKLGALNTTHAVARAMAHGL 234

Query: 246 V 246
           +
Sbjct: 235 I 235


>gi|238792677|ref|ZP_04636309.1| Two-component response regulator [Yersinia intermedia ATCC 29909]
 gi|238728033|gb|EEQ19555.1| Two-component response regulator [Yersinia intermedia ATCC 29909]
          Length = 210

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 15/176 (8%)

Query: 78  VSSDWPFDLVR-CMALSEKDKYYNV--LQRPTELFCPVFHTLPEN----ITPPAGMDNRY 130
           +  + P DLV   + L   D +  +  LQ+       +F +        +       N +
Sbjct: 43  ILKNNPVDLVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGF 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S   D++ I      +         + L ++            S      +   L+ RE
Sbjct: 103 ISKNKDISEILFAAQNVLRGYSFFPSETLTQLA--------GQPSNHDPVNRARLLSERE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 155 INVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|90413366|ref|ZP_01221359.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium profundum 3TCK]
 gi|90325608|gb|EAS42077.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium profundum 3TCK]
          Length = 211

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 150 LTPQQYKVLCMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|329848370|ref|ZP_08263398.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328843433|gb|EGF93002.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 221

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I++G +  E A ++GIS  TV  YI  I RK + ++R  A+   + + +
Sbjct: 154 LSAREQQLLELIAQGLSRKEAARVMGISPYTVAEYIQGIYRKLSVRSRGAAVREGIHSGL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|311280537|ref|YP_003942768.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308749732|gb|ADO49484.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 226

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R  +  + L         +RL    +L   +  + +           LT +E E ++ +
Sbjct: 114 DRRIVAGISLMRDTPFSSEERLRAQAVLPLVELAIHELLQDDDALSEMLTAKEREIVSMV 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 174 REGASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSR 215


>gi|302525407|ref|ZP_07277749.1| predicted protein [Streptomyces sp. AA4]
 gi|302434302|gb|EFL06118.1| predicted protein [Streptomyces sp. AA4]
          Length = 217

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 9/130 (6%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           PE +         + S   D   +   +  +      +                 +  S 
Sbjct: 96  PEVLGAMQAGAKGFLSKDVDGDELLRAIRTIAEDNAYVSP---------TLAGMIIQDSD 146

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + H G    L+ RE + L  ++ G+   ++A IL IS  TV +Y+  I  KT  + R+G 
Sbjct: 147 ERHAGPKIVLSEREKQVLRLVAAGERDVDVAEILDISVRTVRSYLDRIRDKTGERRRAGF 206

Query: 237 IAYAVRNNIV 246
           +  A+R  ++
Sbjct: 207 VRVAIREGLL 216


>gi|111222013|ref|YP_712807.1| putative two-compnent system regulatory protein [Frankia alni
           ACN14a]
 gi|111149545|emb|CAJ61238.1| putative Two-compnent system regulatory protein ( two-component
           system response regulator) [Frankia alni ACN14a]
          Length = 240

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE+E +  ++E  T+ +IA  LGI+ +TV  ++++I+ K    +R  A+  A
Sbjct: 157 LSKREMEVIEIVAEAATNMQIARRLGITEDTVKRHVSNILMKLGAVSRLDAVKKA 211


>gi|333026225|ref|ZP_08454289.1| putative lysine-rich arabinogalactan protein 19 [Streptomyces sp.
           Tu6071]
 gi|332746077|gb|EGJ76518.1| putative lysine-rich arabinogalactan protein 19 [Streptomyces sp.
           Tu6071]
          Length = 266

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+  L  ++E +T+  IA  LGIS  TV+ ++A + RK  T+ R   +  A   
Sbjct: 204 LGLTPREITVLALLAEARTASAIAQRLGISPRTVHRHLAHLYRKFGTRDRLATVLRARET 263

Query: 244 NIV 246
            ++
Sbjct: 264 GVL 266


>gi|262401983|ref|ZP_06078548.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
 gi|262351955|gb|EEZ01086.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
          Length = 209

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|260770204|ref|ZP_05879137.1| DNA-binding response regulator LuxR family [Vibrio furnissii CIP
           102972]
 gi|260615542|gb|EEX40728.1| DNA-binding response regulator LuxR family [Vibrio furnissii CIP
           102972]
          Length = 209

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +    +D  L+ RE + L  I  G  + +IA  L IS  TV  +   I +K    + + 
Sbjct: 138 NEKPAERDETLSKRESDVLKAIVSGCGNKDIADTLHISVRTVETHRLRIKKKLGASSTAA 197

Query: 236 AIAYAVRNNIV 246
            +  A+   +V
Sbjct: 198 LVKLALEKGLV 208


>gi|111017776|ref|YP_700748.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110817306|gb|ABG92590.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1087

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 76/254 (29%), Gaps = 30/254 (11%)

Query: 15   EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLF 69
              + RT   S L             D  +    R  A+TE  G   +          D++
Sbjct: 838  ARKDRTLETSLLYPLGTAYGLSGRTDRAIECHERALAITERYGEKMYRAHSLWAMGIDVW 897

Query: 70   QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
            ++   D  V       L + + L+       V     E    +     + +     M   
Sbjct: 898  RQGDTDRAVR-----LLEQSLELTRHVHTPRVATACLEALAWITRQQGDALRAATLM-GA 951

Query: 130  YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----------------LLAAYQANM 172
               L   V    +    L    +   ++   E+G                    AY  + 
Sbjct: 952  ADGLAQSVGSAVVIHTNLLVYHQDCDQESRKELGDKVFASAHSKGRSLGFDAAIAYALHE 1011

Query: 173  FKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +       D    LT RE +    I+EG T+  IA  L IS  T   ++  I+ K + 
Sbjct: 1012 QPASTSAPDTDSSVRLTKREHQVADLIAEGLTNQAIADRLVISPRTAQGHVEHILAKLSF 1071

Query: 231  KTRSGAIAYAVRNN 244
             +R+   A+ V   
Sbjct: 1072 ASRTQVAAWVVERK 1085


>gi|87122320|ref|ZP_01078202.1| transcriptional regulatory protein degu [Marinomonas sp. MED121]
 gi|86162463|gb|EAQ63746.1| transcriptional regulatory protein degu [Marinomonas sp. MED121]
          Length = 206

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 77/218 (35%), Gaps = 22/218 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWPFDLVR 88
            D +  +  L   +     +  +    G ++  +   +  Q +KLD  +V  D    ++ 
Sbjct: 10  DDHMLVLDGLKARLELEDNIKVI----GIANNGIEALE--QSKKLDPDVVLMDVSMPVLN 63

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +  +++ +     ++   L   +       ++      + Y       A + + +  + 
Sbjct: 64  GIEAAKRFQTEQPDKKV--LMLSMHQDKEYILSIIQTGASGYVLKDVPAAELVLAIETVI 121

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G          +             Y V   +  ELT RE+  L  ++ G  +  IA 
Sbjct: 122 RGGSYFSSGASQAL-------------YQVQEDEKEELTKRELAVLKELASGAANKTIAN 168

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV  +  ++ +K    + +G   YA+ + ++
Sbjct: 169 NLSISVRTVETHRQNLKQKLGIHSAAGLTKYAIEHKLI 206


>gi|332991848|gb|AEF01903.1| DNA-binding response regulator, LuxR family protein [Alteromonas
           sp. SN2]
          Length = 201

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            I+ +D    LV  + L+EK    ++  +   +      + P  I     +  +   L  
Sbjct: 50  DIILTDIEMPLVSGLDLAEKLAALSIGSKVVVMTT---FSKPGYIKRALALGAKGFVLKE 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             +   +  +    KG  ++   L  + L                  +  L+ +E + L 
Sbjct: 107 ADSEYLVSSLHKIVKGERVISPELALMAL----------------DDNNPLSAKESKALK 150

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             ++G  + +IA  L +S  TV NY++  + K     R  A   A +  
Sbjct: 151 LAADGLKTHDIAQKLFLSEGTVRNYLSEAIAKLDATNRVDAARIAKQKG 199


>gi|295132306|ref|YP_003582982.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980321|gb|ADF50786.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 205

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R++E L  + +GKT+ +IA  L I + TV  +  +++RK         + YA++  
Sbjct: 144 LTKRQIEILKLVGKGKTNQQIADALFIGKTTVETHRKNMIRKLGLHGPGELLRYALQRK 202


>gi|222098587|ref|YP_002532645.1| two-component response regulator [Bacillus cereus Q1]
 gi|221242646|gb|ACM15356.1| two-component response regulator [Bacillus cereus Q1]
          Length = 217

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  +T +E+E L  I++GK++ +IA  L +S   V   +  + +K    +RS A+A
Sbjct: 146 RASSHVTITQKELEILESIAKGKSNKQIADELYMSSRAVEYNLTKLFKKFKVSSRSEALA 205

Query: 239 YAVRNNIV 246
            AVR  I+
Sbjct: 206 EAVRKGII 213


>gi|317489864|ref|ZP_07948357.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325829952|ref|ZP_08163410.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|316911019|gb|EFV32635.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325488119|gb|EGC90556.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 191

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 130 YCSLTFDVARIRIGLML--LFPKGRIILRDRLWEI-GLLAAY--QANMFKSYDVHWGKDF 184
             +         +G +L   + +   + R R+ ++ GL+  Y  +    +S   H  + F
Sbjct: 70  AFAALLCGCSAAVGALLRKTWAQTDELERRRVEDLRGLVDRYRTEEGSIESRCAHAARTF 129

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +LT RE E L  + +G T  EIA  L +S +TV  +I ++ RKT    +   +
Sbjct: 130 DLTRREEEVLALLLKGCTRSEIARELFVSGDTVKTHIRNLYRKTGVTGKDELV 182


>gi|258652603|ref|YP_003201759.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258555828|gb|ACV78770.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 363

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT---RSGAIAY 239
           L+GRE++ L   ++G+ +DEIA  L +S  TV  ++ +I  K   +    R+ A+A 
Sbjct: 303 LSGRELQVLGLAAQGRDNDEIARRLTLSVRTVERHLQNIYAKLEVQGKSARTAAVAR 359


>gi|212640439|ref|YP_002316959.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561919|gb|ACJ34974.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 213

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+  L  I +G T  EIA  L IS  TV N+++ I++K + K    A+  A     
Sbjct: 153 LTKTEISILKLIDQGYTQKEIANHLVISIQTVKNHVSRILKKLSAKNSKHAVCKAREMGF 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|205372380|ref|ZP_03225194.1| response regulator receiver [Bacillus coahuilensis m4-4]
          Length = 210

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGK 182
           +     Y         +   + L+     +I +      GL     A++ +   +     
Sbjct: 96  SYGAEGYLLKAIHPKDLAASIRLVHRGETLINQ------GLAKQLLASIPQENKEDSIYT 149

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            F L+ RE + L  I+ G ++ +I+  L ++  TV NY++ I  K   + R GA
Sbjct: 150 KFGLSEREGQILQAIANGLSNKQISQKLFLTEGTVKNYVSKIYAKLDVQDRIGA 203


>gi|163740028|ref|ZP_02147432.1| Two component transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis BS107]
 gi|161386659|gb|EDQ11024.1| Two component transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis BS107]
          Length = 266

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 66/209 (31%), Gaps = 24/209 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ R        + +    A+     ++  L+    + Q      IV SD         A
Sbjct: 76  IMGRECSTSMQTALSAYAEAVIPQRKSAEALIAALRVVQSGY--RIVPSDISA------A 127

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L   D   +   R  E             +PP        + T    RI   L       
Sbjct: 128 LRAADVTTSGGDRAAETLS--------TASPPELE----LAETVPADRINGSLPQSGSGT 175

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             +  D     G   +       +     G    L+GRE   LT + +G T+  IA  L 
Sbjct: 176 GALTGDTTSRSGATVSTDLRRMPASAAACG----LSGREWLILTKLIDGATNKSIANELS 231

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           I   TV  ++ +  RK   K R+ A  +A
Sbjct: 232 ICEATVKVHLRTCFRKIGAKNRTQAAIWA 260


>gi|147675562|ref|YP_001218191.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|146317445|gb|ABQ21984.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|227014589|gb|ACP10799.1| transcriptional regulator,LuxR family [Vibrio cholerae O395]
          Length = 209

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|332558019|ref|ZP_08412341.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides WS8N]
 gi|332275731|gb|EGJ21046.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides WS8N]
          Length = 235

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +++  L  I +G+ +  I+  L I+  TV  +IA+IM K   + R+ A   A +  I
Sbjct: 173 LTPQQMNILRLICQGRPNKLISYELSIAEATVKTHIAAIMTKINVRNRTQAALLASKARI 232


>gi|262283291|ref|ZP_06061057.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262260782|gb|EEY79482.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 199

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLFLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLDAENRTEAVRIGQEKG 197


>gi|254446726|ref|ZP_05060201.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198256151|gb|EDY80460.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 222

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEGKTSDEIAVIL 210
           LR+     G L    A++ +   +       K   L+ RE E L  ++EG ++ +IA +L
Sbjct: 112 LREVKSGSGYLCPICASLLRESHLVGSAVAKKKNRLSNREREVLQAVAEGFSTKQIAEML 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  T+  + A++M+K   ++       A    I+
Sbjct: 172 EVSVKTIEAHRANLMKKLDARSAVELTRCAFELGII 207


>gi|116694474|ref|YP_728685.1| response regulator [Ralstonia eutropha H16]
 gi|113528973|emb|CAJ95320.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 229

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +  LT R+ E L  +  G  +  IA+ L +S  TV  ++ +I+ K   + R  AIA
Sbjct: 165 ELGLTARQAEVLGMMLRGLPNKRIAMTLSVSEQTVKEHVTAILGKLGVRNRIEAIA 220


>gi|315222040|ref|ZP_07863951.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189006|gb|EFU22710.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 199

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V       L+ +E+  L   + G +S EIA  L +S  TV NY++SI+ K A + R  A
Sbjct: 130 EVMMTSKNPLSNQEILVLQAAARGLSSKEIAQKLYLSNGTVRNYMSSILTKLAAENRLEA 189

Query: 237 IAYAVRNNIV 246
           +  A  N  +
Sbjct: 190 VRIAQENGWI 199


>gi|113869645|ref|YP_728134.1| response regulator [Ralstonia eutropha H16]
 gi|113528421|emb|CAJ94766.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 224

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 38/89 (42%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           ++  L      +A  A          G    LT RE + L  I  G  + EIA  LG+S 
Sbjct: 129 IQSVLAGRVFYSARIARGMAEQSPAAGPLDALTPRERDILRGIGRGLANKEIAAQLGVSV 188

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            TV  +  ++ RK   + R+G + YAV  
Sbjct: 189 RTVETHRLNLKRKLGIEGRAGLVKYAVET 217


>gi|104783098|ref|YP_609596.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95112085|emb|CAK16812.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 216

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAA 204


>gi|60683534|ref|YP_213678.1| transcriptional regulator GerE [Bacteroides fragilis NCTC 9343]
 gi|60494968|emb|CAH09784.1| putative transcriptional regulator GerE, LuxR family [Bacteroides
           fragilis NCTC 9343]
          Length = 278

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K    A   A    +
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 246 V 246
           +
Sbjct: 277 L 277


>gi|17547880|ref|NP_521282.1| two component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17430186|emb|CAD16949.1| probable two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 231

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL-AAYQA 170
           V  ++          D+    +  ++  +  G   + P     +  R  + G L AA +A
Sbjct: 101 VMRSIEVGAAGYLLKDSSAARILDEIRSLASGGSPISPLIARQILARFRQGGSLSAADEA 160

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
               S  +       L+ RE E L  I++G T+ EIA ++ +S  TV  ++  I  K   
Sbjct: 161 PASASSPL-------LSAREKEVLDLITKGFTAQEIAKLMALSHFTVRTFVRRIYSKLKV 213

Query: 231 KTRSGAIAYAVRNNIV 246
            +++ AI  A    ++
Sbjct: 214 TSKAEAIYEARTLGLL 229


>gi|13475642|ref|NP_107209.1| two component system response regulator [Mesorhizobium loti
           MAFF303099]
 gi|14026398|dbj|BAB52995.1| two component system response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 225

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 18/151 (11%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-------ILRDR 158
            E+   V    P+        D+    +   ++    G ++   K          IL  R
Sbjct: 64  QEVLSDVLAAYPDTRFAIVSGDDSRSEILTALSIGLHGYIVKSQKDEEVVLAVNEILAGR 123

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDF-----------ELTGREVECLTWISEGKTSDEIA 207
           ++   LL+   A+      +   ++             LT R+ + L  ++EG ++ EIA
Sbjct: 124 IYVPALLSRTSADQRSYAALPSARNPIRQRVGSSDLGRLTSRQRDVLKLMAEGYSNKEIA 183

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             L I+  T   + A+I+R+   + R+ A  
Sbjct: 184 RNLDIAEATTKIHAAAILRELGVRNRTEAAV 214


>gi|21223502|ref|NP_629281.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|9967644|emb|CAC05762.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 204

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A    
Sbjct: 143 PLTDREREILRAAADGSTNAELASALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVARNKG 202


>gi|124266219|ref|YP_001020223.1| response regulator protein [Methylibium petroleiphilum PM1]
 gi|124258994|gb|ABM93988.1| response regulator protein [Methylibium petroleiphilum PM1]
          Length = 217

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + RE E L  +++G +S +IA  L +S  TV  +  +I RK   + ++  I YAV + 
Sbjct: 152 SHRESEILACLADGLSSKQIAERLDLSVRTVETHRQNIKRKLGIEGQAELIKYAVEHG 209


>gi|307292969|ref|ZP_07572815.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306881035|gb|EFN12251.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 263

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 15/182 (8%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNRYCSL 133
            ++V +++P + VR    S       V +    L  P  +  +P  +         +   
Sbjct: 53  RALVITNYPAEFVRFYTESHAYVIDPVYEVSQLLDRPFSWDEIPGYVDLTGTQSALFEEA 112

Query: 134 TFDVARIRIGLMLLFP------------KGRIILRDRLWEIGLLAAYQANM-FKSYDVHW 180
                   + + L  P            +  +     L  + ++AA+      + +    
Sbjct: 113 RLHGLVHGVTVPLHIPSESHASCTFARAEPIMASPSLLTTLHIVAAFGFKAGLRLHHASR 172

Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G D   LT RE +C   ++ GK+  EI+ ILG+S  +V  +++   ++     RS  +A 
Sbjct: 173 GHDVPRLTRREAQCTALVAVGKSDWEISQILGLSETSVRYFVSHAKQRYGVYKRSELVAR 232

Query: 240 AV 241
           A+
Sbjct: 233 AL 234


>gi|322421400|ref|YP_004200623.1| LuxR family two component transcriptional regulator [Geobacter sp.
           M18]
 gi|320127787|gb|ADW15347.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M18]
          Length = 216

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQA 170
           V   L          D  +  L   +  +  G   L P+   +++++ L  I        
Sbjct: 91  VVEVLKAGANGYVLKDAAFSELATAIRAVAAGETYLPPRVTTLLIKEYLQRI-------- 142

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                 D        L+ RE E L  I++G  + EIA   G+S  TV N   SIM+K   
Sbjct: 143 -----PDEVPATYENLSAREREILQLIADGSNAKEIAFAFGVSVKTVENQRHSIMKKLDL 197

Query: 231 KTRSGAIAYAVRNNI 245
            + +    YAVR  +
Sbjct: 198 FSIAELTKYAVRQGL 212


>gi|302062390|ref|ZP_07253931.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           tomato K40]
          Length = 88

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  + A  +               LT R+ + L  +  G T+ EIA+ L  S +TV +++
Sbjct: 3   LQRIQALLSGEPPEPRTIAATPLPLTSRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHV 62

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I+    T  R+ A   A R  +V
Sbjct: 63  QAILTILQTSCRTEAADAARRLGLV 87


>gi|196231626|ref|ZP_03130484.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224479|gb|EDY18991.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 219

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + LT +  G+TS EI   +G+S  TV  + +++M K      +  + +A +  +
Sbjct: 159 LSRREQQVLTQVLTGRTSKEIGESIGLSPRTVEFHRSNLMAKLGASNLAELLVHARQRGL 218


>gi|184200079|ref|YP_001854286.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183580309|dbj|BAG28780.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 252

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 19/179 (10%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFD 136
           +R   +   +    ++ +  +       T          L    +     D R+  +   
Sbjct: 61  IRMPGMDGIEATAQIVAQCPDTKVLALTTFSTLEYVVPALRAGASGYLVKDARHHEIVSA 120

Query: 137 VARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQANM--------FKSYDVHWGKDFELT 187
           V+ IR   + L P     +  + L ++ + +  +                       +LT
Sbjct: 121 VSLIREDELALSPSVANSLANNVLGDVPVPSVRRGRQRGAMTQAAMSPPPGPHPGAPKLT 180

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E E L WI++G  + EIA  + +S  +V +Y++ +  K A + R   +   ++  +V
Sbjct: 181 DCEQETLQWIAKGLNNAEIAERMSVSHGSVKSYVSHLCEKLAVRDRVQVLISGIQWGLV 239


>gi|1724131|gb|AAB38509.1| putative response regulator [Rhodobacter sphaeroides]
          Length = 212

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             + H   +  LT R+      +  GK++  IA  L +  +TV  +I +IM+K   K R+
Sbjct: 135 REESHMAVNEHLTERQRAVCDAVRRGKSNKIIAGELNLCESTVKVHIRNIMKKLGAKNRT 194

Query: 235 GAI 237
            A 
Sbjct: 195 EAA 197


>gi|13474731|ref|NP_106300.1| two-component system, response regulator [Mesorhizobium loti
           MAFF303099]
 gi|14025486|dbj|BAB52086.1| two-component system, response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 219

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++   L  ++EG  + +IA  LG+S  T+  ++++I++K    +R+ A+ 
Sbjct: 153 LTPQQTRVLGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVI 205


>gi|326800940|ref|YP_004318759.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551704|gb|ADZ80089.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 213

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 24/167 (14%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           DW  ++             N  +R       V   L    +     +     L   +   
Sbjct: 70  DWCKEIKIKAPNVSVLALSNHAER-----SFVMKMLQNGASGYLLKNVSVDDLVHAIKAA 124

Query: 141 RIGLMLLFPK-GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
             G +    +   II +  L E+                      +LT RE + L+ I+E
Sbjct: 125 YKGEIAFSREVNEIIAKPTLNELK------------------GPPQLTKREKQILSMIAE 166

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT+  +A  L +S  TV  +  ++++K   K  +  I  A++  ++
Sbjct: 167 GKTTANMAETLFLSPLTVETHRRNLLQKFEVKNVAELIKEALQQRLL 213


>gi|294817786|ref|ZP_06776428.1| CitB protein [Streptomyces clavuligerus ATCC 27064]
 gi|294322601|gb|EFG04736.1| CitB protein [Streptomyces clavuligerus ATCC 27064]
          Length = 842

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R+ E    ++ G ++ +IA  L IS  TV N+I  +MR+    +R G   +A
Sbjct: 762 LTPRQTEVSQLVALGLSNKQIARQLEISEWTVVNHIREVMRRLGCASRVGIARWA 816


>gi|256389975|ref|YP_003111539.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356201|gb|ACU69698.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 208

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 19/161 (11%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF---DVARIRIG 143
           +    +S  D    + +   E+   +  T          M++   +       VA +   
Sbjct: 62  IEMPGMSGLDAADALHRAMPEVRIIILTTFGRPGFLRRAMESGASAFLVKDAPVAELVAA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+I  D                 +       +  LT RE + L   ++G T 
Sbjct: 122 IRKVLRGERVIDPDL----------------AAAALAAGENPLTPRERDVLAASADGSTI 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +IA  L +S  TV NY+++ ++KTA + R+ A+  A +  
Sbjct: 166 ADIARRLHLSEGTVRNYLSACIQKTAARNRTEAVRTAQQRG 206


>gi|315924040|ref|ZP_07920267.1| LuxR family DNA-binding response regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622666|gb|EFV02620.1| LuxR family DNA-binding response regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 198

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +LT RE E    IS+G T+  IA    IS NTV  +I  I  K     R 
Sbjct: 135 KLTDREWEIAVLISQGLTNTAIAEKTFISLNTVKTHIQHIYEKLNVPNRV 184


>gi|309812510|ref|ZP_07706262.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
 gi|308433529|gb|EFP57409.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
          Length = 198

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 16/155 (10%)

Query: 84  FDLVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
            DL     L        +  R   P  L    + T  + +       + Y       A +
Sbjct: 57  MDLQMGPGLDGVAATRAIRARDDAPRVLILTTYDTDVDIVRGVEAGASGYLLKDAPPADL 116

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        ++          +AA   N   S          LT RE++ L  ++ G
Sbjct: 117 VEAVHRASRGETVLAP-------AVAARLVNRLSSPAPT------LTARELDVLDAVAGG 163

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            T+ EIA  L +S  TV  ++  I  K    +R+ 
Sbjct: 164 ATNKEIAKHLFVSEATVKTHLVHINEKLGATSRTE 198


>gi|253566600|ref|ZP_04844053.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5]
 gi|251944772|gb|EES85247.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5]
          Length = 278

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K    A   A    +
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 246 V 246
           +
Sbjct: 277 L 277


>gi|256829789|ref|YP_003158517.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578965|gb|ACU90101.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 219

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 42/120 (35%), Gaps = 11/120 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L           +    L   +       M + PK   I    + E  LL  +  N 
Sbjct: 92  FQALALGANAYVLKGSGPEELFLGIHYSMKNEMFISPKLAKI----IVEDYLLVNHHRNS 147

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE E +  I +G  S EIA IL IS  TVN + ++I+ K     
Sbjct: 148 LPPLH-------NLTSREKEIVKLIIDGNKSREIAEILFISIKTVNKHRSNILVKLGIHN 200


>gi|111020008|ref|YP_702980.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110819538|gb|ABG94822.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1035

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE +    I+EG T+  IA  L IS  T   ++  I+ K    +R+   A+ V  
Sbjct: 975  LTKRERQVADLIAEGLTNQAIADRLVISPRTAQGHVEHILAKLGFTSRTQVAAWVVER 1032


>gi|86747337|ref|YP_483833.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86570365|gb|ABD04922.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 228

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 171 NMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +  +  D H  +       +LT RE E +  ++ G  + +IA  L +S  TV  +  +++
Sbjct: 129 DQRRRNDAHRDESIRLRYEQLTPREREVMALVAAGLMNKQIAWRLSLSEITVKIHRGNMI 188

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RK   K+ +  +  A +  +
Sbjct: 189 RKMQVKSVAELVRLADQLGV 208


>gi|53715583|ref|YP_101575.1| putative transcriptional regulator [Bacteroides fragilis YCH46]
 gi|52218448|dbj|BAD51041.1| putative transcriptional regulator [Bacteroides fragilis YCH46]
          Length = 278

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K    A   A    +
Sbjct: 217 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 276

Query: 246 V 246
           +
Sbjct: 277 L 277


>gi|15642696|ref|NP_232329.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586612|ref|ZP_01676397.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121726730|ref|ZP_01679955.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|153212581|ref|ZP_01948328.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153803422|ref|ZP_01958008.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153817412|ref|ZP_01970079.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153821283|ref|ZP_01973950.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153825520|ref|ZP_01978187.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|153828368|ref|ZP_01981035.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|227082817|ref|YP_002811368.1| transcriptional regulator,LuxR family [Vibrio cholerae M66-2]
 gi|229509830|ref|ZP_04399311.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|229513623|ref|ZP_04403087.1| transcriptional regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229516952|ref|ZP_04406398.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|229527372|ref|ZP_04416764.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
 gi|229606755|ref|YP_002877403.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
 gi|254225427|ref|ZP_04919038.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|254285892|ref|ZP_04960854.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|254851239|ref|ZP_05240589.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255744339|ref|ZP_05418291.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262158551|ref|ZP_06029666.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|262170055|ref|ZP_06037744.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|298500482|ref|ZP_07010286.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657298|gb|AAF95842.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549171|gb|EAX59204.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121630891|gb|EAX63273.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124116452|gb|EAY35272.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|124121035|gb|EAY39778.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|125622061|gb|EAZ50384.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|126511998|gb|EAZ74592.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126521215|gb|EAZ78438.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|148876198|gb|EDL74333.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|149740805|gb|EDM54896.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|150424074|gb|EDN16013.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|227010705|gb|ACP06917.1| transcriptional regulator,LuxR family [Vibrio cholerae M66-2]
 gi|229335004|gb|EEO00489.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
 gi|229346015|gb|EEO10987.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|229349500|gb|EEO14456.1| transcriptional regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229353304|gb|EEO18243.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|229369410|gb|ACQ59833.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
 gi|254846944|gb|EET25358.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255737864|gb|EET93257.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262021463|gb|EEY40175.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|262029712|gb|EEY48361.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|297540651|gb|EFH76708.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485173|gb|AEA79580.1| Transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4]
          Length = 209

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|318062308|ref|ZP_07981029.1| transcriptional regulator, LuxR family protein [Streptomyces sp.
           SA3_actG]
          Length = 266

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+  L  ++E +T+  IA  LGIS  TV+ ++A + RK  T+ R   +  A   
Sbjct: 204 LGLTPREITVLALLAEARTASAIAQRLGISPRTVHRHLAHLYRKFGTRDRLATVLRARET 263

Query: 244 NIV 246
            ++
Sbjct: 264 GVL 266


>gi|317489593|ref|ZP_07948098.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830115|ref|ZP_08163572.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|316911325|gb|EFV32929.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325487582|gb|EGC90020.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 458

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDV---ARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
             V   LP      A     Y  L   +   +R R     L  +       RL E+ L  
Sbjct: 337 QLVGALLPSEFASAASSVMIYIILVCCIFLFSRRRDAPSKLHAESIADDSVRLSELSL-- 394

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                     D    + ++LT RE E L  +    T +EIA  L IS NTV  ++ ++ +
Sbjct: 395 ----------DDAAFERYDLTMREREVLLLLLNRLTYEEIAERLFISTNTVKTHVGNVYK 444

Query: 227 KTATKTRSGAIAY 239
           KT   +R   ++ 
Sbjct: 445 KTGVSSRKELVSK 457


>gi|212212606|ref|YP_002303542.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212011016|gb|ACJ18397.1| response regulator [Coxiella burnetii CbuG_Q212]
          Length = 240

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 107 ELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           E+   V   +   + P   ++     + + + D A +   +  +    R I       + 
Sbjct: 98  EIKILVVTAMEGELLPMRLLEVGVRGFITKSSDSAELERAIRAVHSGQRYIGSAIASRLA 157

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L     A              +L+ R++E L  +++G  ++ IA  L I+  TVN++   
Sbjct: 158 LSKTTAAK---------SPFDQLSNRQMEVLLLLAKGMNAESIAKQLHITAKTVNSHRYR 208

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +  K   K     I  AV+  ++
Sbjct: 209 MFEKLGVKNDVELIKLAVQYGLI 231


>gi|254417726|ref|ZP_05031450.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3]
 gi|196183903|gb|EDX78879.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3]
          Length = 209

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+  L  ISEG+ + EIA  L +S +TV   +  I  K     R+ A+  A++  
Sbjct: 147 LTEREIAILKAISEGRANKEIARRLHVSVDTVKADMKRIFSKLDVTDRTRAVIVAIQRG 205


>gi|163787697|ref|ZP_02182144.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
 gi|159877585|gb|EDP71642.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
          Length = 217

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 45/102 (44%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + L    + +L   ++    ++              G + +LT RE E L  ISE  T+ 
Sbjct: 116 IELLRALKTVLSGEIYLQKDMSDRLLYQRSKPKAKNGLNIKLTRREHEVLIAISEELTTQ 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I+  L IS  TV  + ++I+ K   K   G I  A+ N ++
Sbjct: 176 QISEKLFISPKTVETHRSNIILKFGAKNSVGIIKMAIENGLL 217


>gi|15598800|ref|NP_252294.1| response regulator ErdR [Pseudomonas aeruginosa PAO1]
 gi|107103118|ref|ZP_01367036.1| hypothetical protein PaerPA_01004187 [Pseudomonas aeruginosa PACS2]
 gi|116051601|ref|YP_789560.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152984066|ref|YP_001346921.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218890171|ref|YP_002439035.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254242302|ref|ZP_04935624.1| hypothetical protein PA2G_03043 [Pseudomonas aeruginosa 2192]
 gi|296387892|ref|ZP_06877367.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313108962|ref|ZP_07794937.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9949760|gb|AAG06992.1|AE004780_11 response regulator ErdR [Pseudomonas aeruginosa PAO1]
 gi|115586822|gb|ABJ12837.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126195680|gb|EAZ59743.1| hypothetical protein PA2G_03043 [Pseudomonas aeruginosa 2192]
 gi|150959224|gb|ABR81249.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218770394|emb|CAW26159.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310881439|gb|EFQ40033.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 217

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  TV  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYDLNVSEATVKAHVTAIFRKLNVRTRTQAA 204


>gi|332666002|ref|YP_004448790.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332334816|gb|AEE51917.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 207

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT RE E +  +  GKT+ +IA  L I+ NT+  +I +   K    +R+ A+A
Sbjct: 146 PLTDREFEVVRLLYAGKTNQQIAAELYIAMNTLKKHINNAYFKLDVGSRTTAVA 199


>gi|319945594|ref|ZP_08019846.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319748193|gb|EFW00435.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 199

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 37/81 (45%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +        L+ +E   L  +++G ++ EIA  L +S  T+ NY++ 
Sbjct: 117 VLAGQKEYSPELMEGILAHPNPLSSQEQAVLKEVAKGASNQEIADRLFLSNGTIRNYMSG 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A   A    
Sbjct: 177 ILTKLDAENRTEAAKIAQEKG 197


>gi|307292632|ref|ZP_07572478.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306880698|gb|EFN11914.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 212

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +  D    +   LT  +++ L  +  GK + +IA  L +S  TV  ++ +IMRK   + R
Sbjct: 137 RPEDAVQKEVASLTPTQLKVLLEVLNGKLNKQIAHDLMMSEATVKAHMTAIMRKLDVQNR 196

Query: 234 SGAIAYAVRNNI 245
           + A   A    +
Sbjct: 197 TQAALVARSLGL 208


>gi|240142741|ref|YP_002967254.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Methylobacterium extorquens AM1]
 gi|240012688|gb|ACS43913.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Methylobacterium extorquens AM1]
          Length = 220

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L  I++G ++ EIA  + +S  +V  Y A    K   +TR+  I YA    
Sbjct: 154 LSPRETEVLRLIAQGFSNKEIARRIDLSVKSVETYKARAAEKLGLRTRAEIIRYAAAQG 212


>gi|118722505|gb|ABL09961.1| regulator [Streptomyces echinatus]
          Length = 202

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   LT RE E L W SEG +  ++A    +S  TV N+++SI+ K   ++R  A+  
Sbjct: 135 ESRANPLTPRETEILRWASEGGSVRDVADAARLSPGTVRNHLSSIVTKLGARSRLDAVRI 194

Query: 240 A 240
           A
Sbjct: 195 A 195


>gi|182438031|ref|YP_001825750.1| LuxR family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|117676049|dbj|BAF36640.1| putative LuxR-family transcriptional regulator [Streptomyces
           griseus]
 gi|178466547|dbj|BAG21067.1| putative LuxR-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 400

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTW 196
           AR+R             LR+    +G  A        S  V    D +ELT RE E   +
Sbjct: 254 ARVRNRAGRWLVCHASCLREAGDRLGASAVVIEPAKTSEIVPLIVDAYELTDRETEVTQF 313

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           I+ G  + EIA  L +S +TV ++I ++  K    +R   +  
Sbjct: 314 IARGLPTGEIAAQLHLSPHTVRDHIKAVFEKVGVSSRGELVGK 356


>gi|238760517|ref|ZP_04621652.1| Two-component response regulator [Yersinia aldovae ATCC 35236]
 gi|238701269|gb|EEP93851.1| Two-component response regulator [Yersinia aldovae ATCC 35236]
          Length = 210

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 15/176 (8%)

Query: 78  VSSDWPFDLVR-CMALSEKDKYYNV--LQRPTELFCPVFHTLPEN----ITPPAGMDNRY 130
           +  + P DLV   + L   D +  +  LQ+       +F +        +       N +
Sbjct: 43  ILKNNPVDLVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGF 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S   D++ I      +         + L ++            S      +   L+ RE
Sbjct: 103 ISKNKDISEILFAAQNVLRGYSFFPSETLTQLA--------GQPSSHDPVNRARLLSERE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 155 INVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|255039459|ref|YP_003090080.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254952215|gb|ACT96915.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 212

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 17/172 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNV----LQRPTELFCPVFHTLPENITP---PAGMDNRYCSL 133
             P  LV  +AL+  +    +       P+E+   V   + +  T         N + S 
Sbjct: 45  HPPDILVMDLALNGMNSIELLDICRSTLPSEMKIIVLSAVTDAQTVKHTIRRGANSFLSK 104

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +  +      +  ++   + I R          + + ++  S          L+ RE + 
Sbjct: 105 STALEEFLESIFQVYKGKQYIGR----------SIRESLVNSVFSEEEVVLHLSPREKQV 154

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +  G T  EIA  L +S +TV  Y  S+M K   +  +  I YA+++ +
Sbjct: 155 LRKVCSGHTIKEIAYELKLSTHTVQYYHRSVMDKLKVRRTTDLIVYAMQHGL 206


>gi|330869684|gb|EGH04393.1| DNA-binding response regulator CorR [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 76

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT R+ + L  +  G T+ EIA+ L  S +TV +++ +I+    T  R+ A   
Sbjct: 9   AATPLPLTSRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHVQAILTILQTSCRTEAADA 68

Query: 240 AVRNNIV 246
           A R  +V
Sbjct: 69  ARRLGLV 75


>gi|327405216|ref|YP_004346054.1| LuxR family transcriptional regulator [Fluviicola taffensis DSM
           16823]
 gi|327320724|gb|AEA45216.1| transcriptional regulator, LuxR family [Fluviicola taffensis DSM
           16823]
          Length = 259

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L   ++G T ++IA  + ++ +TV  Y   I  + +      A+AYAV + I
Sbjct: 199 LTEREIEILRLHAQGLTINQIADKIFVAPDTVKYYRRRIFERLSVTNIVEALAYAVNSKI 258

Query: 246 V 246
           +
Sbjct: 259 I 259


>gi|255326927|ref|ZP_05368003.1| two component transcriptional regulator, LuxR family [Rothia
           mucilaginosa ATCC 25296]
 gi|255296144|gb|EET75485.1| two component transcriptional regulator, LuxR family [Rothia
           mucilaginosa ATCC 25296]
          Length = 210

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L + +  +            +  +  G    LT RE + L   + G T+ +IA  L +S 
Sbjct: 120 LAEAIRRVHAGLRVVDPSLAADSLVTGAS-PLTEREAQVLREAASGGTAQQIASALFLSA 178

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            TV NY+++ M KT   TR  A+  A  N 
Sbjct: 179 GTVRNYLSAAMAKTGASTRQDAVRIATENG 208


>gi|256391311|ref|YP_003112875.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357537|gb|ACU71034.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 267

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR--------LWEIGLL 165
               E    P G+ ++   L        + + L  P G   + DR           +  L
Sbjct: 127 ARFREEFLVPRGIADKAAMLIDAAPSGVLWVGLAVPDGVGRVSDRDLAVLRVLRRHLTPL 186

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A  Q    +S +   G D++LT RE +     ++G T+ +IA  L I  +TV  ++  ++
Sbjct: 187 AVEQLARNRSREASRG-DWDLTPREWDVADLAAQGLTNRQIAARLFIGVDTVKKHLTRVL 245

Query: 226 RKTATKTRSGAI 237
             T+  +R+   
Sbjct: 246 AATSCGSRTQLA 257


>gi|254506507|ref|ZP_05118649.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
 gi|219550681|gb|EED27664.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
          Length = 211

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|78187407|ref|YP_375450.1| two component LuxR family transcriptional regulator [Chlorobium
           luteolum DSM 273]
 gi|78167309|gb|ABB24407.1| two component transcriptional regulator, LuxR family [Chlorobium
           luteolum DSM 273]
          Length = 214

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E+E +  IS G T+ EIAV   +S +TV  +  +I RK    +    + +A++  +
Sbjct: 147 LTTSEIEIVRLISTGLTTKEIAVKKHVSFHTVTTHRKNIFRKLGVSSSPELMMFAIKAGL 206

Query: 246 V 246
           +
Sbjct: 207 I 207


>gi|77463145|ref|YP_352649.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387563|gb|ABA78748.1| two component transcriptional regulator, LuxR family family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 235

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +++  L  I +G+ +  I+  L I+  TV  +IA+IM K   + R+ A   A +  I
Sbjct: 173 LTPQQMNILRLICQGRPNKLISYELSIAEATVKTHIAAIMTKINVRNRTQAALLASKARI 232


>gi|78063352|ref|YP_373260.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77971237|gb|ABB12616.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 210

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 15/161 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           + P  LV  + + EK  +    +        PV         P              V  
Sbjct: 48  NLPACLVLDVRMPEKSGFDVQAELNARGATLPVIFVSGHGDIP------------MSVRA 95

Query: 140 IRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           ++ G +    K     +  +R+     LA  +  + + +     +   LT RE E L  +
Sbjct: 96  LQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHAVSQRHRELRQRLDALTAREKEVLRGV 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK S +IA  L IS  TV+ + ASI  K    + +  + 
Sbjct: 156 VDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAALVR 196


>gi|324992362|gb|EGC24283.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
          Length = 199

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLNAENRTEAVRIGQEQG 197


>gi|295106208|emb|CBL03751.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 516

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +D+ LT RE E L +++ G+++  IA  L +S +TV  +I  I+ KT   ++   I
Sbjct: 454 EDYGLTRREAEVLPFLARGRSAKVIAEALFVSESTVRTHIRRILEKTDLHSKQQVI 509


>gi|285016912|ref|YP_003374623.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283472130|emb|CBA14637.1| putative two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 221

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT +++  L  +  G+ + +IA  L +S  T+  ++ +I+RK     R+ A+  A + +
Sbjct: 149 ELTPQQIRVLQMLGAGRLNKQIAYDLSVSEATIKAHVTAILRKLGVTNRTQAVLLAGKLS 208

Query: 245 I 245
           I
Sbjct: 209 I 209


>gi|254788344|ref|YP_003075773.1| regulator in two-component regulatory system [Teredinibacter
           turnerae T7901]
 gi|237686243|gb|ACR13507.1| regulator in two-component regulatory system [Teredinibacter
           turnerae T7901]
          Length = 208

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   +    +I+  +  +      +  +    +  +A  + ++         K   LT 
Sbjct: 101 GYIPKSCSPQKIQSAIQSMLEGNHWVPDEFTHTLTPVANEERDL-------AAKIATLTP 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   L  + EG  + +I   +G++  TV  +I +I RK     R+ A+  
Sbjct: 154 QQYRVLCLLREGWLNKQIGFEMGVTEATVKAHITAIFRKLGISNRTQAVIM 204


>gi|312884751|ref|ZP_07744452.1| LuxR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367664|gb|EFP95215.1| LuxR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 211

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 138 ARIRIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                G +      R +   L   L          A+     +    K   LT ++ + L
Sbjct: 98  RHGAFGFIPKSSDMRALVNALNQVLEGNMFFPETVADFGSEKNRLAEKIASLTPQQHKVL 157

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 158 GMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVI 201


>gi|229521769|ref|ZP_04411187.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80]
 gi|229341363|gb|EEO06367.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80]
          Length = 209

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|86135201|ref|ZP_01053783.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
 gi|85822064|gb|EAQ43211.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
          Length = 213

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQAN-----MFKSYDVHWGKDFELTGREVECLTWISEG 200
           LL    + +L   L EI     Y        + KS +     D  L  RE+E L      
Sbjct: 106 LLKDTEKTVLEKALREIVENGFYHTKNVTNLLMKSVNGVLKDDVVLKPREIEFLKLACTE 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T  E+A  + +S  T++ Y  ++  K   + R G + YAVRN I
Sbjct: 166 MTYKEVADKMCLSPKTIDGYREALFAKLNVRNRVGMVIYAVRNKI 210


>gi|311896158|dbj|BAJ28566.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 202

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 32/65 (49%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D  LTGRE+E L   +EG    EIA  L +S  TV NY+ +++ K   + R  AI  
Sbjct: 135 ESGDCPLTGREIEVLRLAAEGAEVAEIASRLFLSSGTVRNYLTTVVSKLNARNRVDAIRV 194

Query: 240 AVRNN 244
           A    
Sbjct: 195 AKAAG 199


>gi|15610269|ref|NP_217649.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis H37Rv]
 gi|15842706|ref|NP_337743.1| LuxR family DNA-binding response regulator [Mycobacterium
           tuberculosis CDC1551]
 gi|31794309|ref|NP_856802.1| two component transcriptional regulatory protein DevR
           [Mycobacterium bovis AF2122/97]
 gi|121639016|ref|YP_979240.1| two component transcriptional regulatory protein DevR
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662987|ref|YP_001284510.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis H37Ra]
 gi|148824327|ref|YP_001289081.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis F11]
 gi|167970198|ref|ZP_02552475.1| two component system transcriptional regulatory protein devR
           (luxR/uhpA-family) [Mycobacterium tuberculosis H37Ra]
 gi|215405131|ref|ZP_03417312.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 02_1987]
 gi|215413001|ref|ZP_03421702.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215428587|ref|ZP_03426506.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis T92]
 gi|215432092|ref|ZP_03430011.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis EAS054]
 gi|215447421|ref|ZP_03434173.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis T85]
 gi|218754909|ref|ZP_03533705.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis GM 1503]
 gi|219559179|ref|ZP_03538255.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis T17]
 gi|224991508|ref|YP_002646197.1| two component transcriptional regulatory protein [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253800166|ref|YP_003033167.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233755|ref|ZP_04927080.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis C]
 gi|254365759|ref|ZP_04981804.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552223|ref|ZP_05142670.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260188172|ref|ZP_05765646.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CPHL_A]
 gi|260202279|ref|ZP_05769770.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T46]
 gi|260206471|ref|ZP_05773962.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis K85]
 gi|289444697|ref|ZP_06434441.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T46]
 gi|289448812|ref|ZP_06438556.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555407|ref|ZP_06444617.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 605]
 gi|289571343|ref|ZP_06451570.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T17]
 gi|289575844|ref|ZP_06456071.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis K85]
 gi|289746943|ref|ZP_06506321.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 02_1987]
 gi|289751809|ref|ZP_06511187.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T92]
 gi|289755253|ref|ZP_06514631.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis EAS054]
 gi|289759262|ref|ZP_06518640.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis T85]
 gi|289763316|ref|ZP_06522694.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis GM 1503]
 gi|294995500|ref|ZP_06801191.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis 210]
 gi|297635775|ref|ZP_06953555.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732772|ref|ZP_06961890.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN R506]
 gi|298526608|ref|ZP_07014017.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306777449|ref|ZP_07415786.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu001]
 gi|306782174|ref|ZP_07420511.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu002]
 gi|306785994|ref|ZP_07424316.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu003]
 gi|306790359|ref|ZP_07428681.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu004]
 gi|306794886|ref|ZP_07433188.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu005]
 gi|306799085|ref|ZP_07437387.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu006]
 gi|306804929|ref|ZP_07441597.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu008]
 gi|306809118|ref|ZP_07445786.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu007]
 gi|306969219|ref|ZP_07481880.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu009]
 gi|306973567|ref|ZP_07486228.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu010]
 gi|307081276|ref|ZP_07490446.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu011]
 gi|307085878|ref|ZP_07494991.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu012]
 gi|313660105|ref|ZP_07816985.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN V2475]
 gi|81818247|sp|P95193|DEVR_MYCTU RecName: Full=Transcriptional regulatory protein devR (dosR)
 gi|1781234|emb|CAB06281.1| TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY
           LUXR/UHPA-FAMILY) [Mycobacterium tuberculosis H37Rv]
 gi|4335782|gb|AAD17452.1| DevR [Mycobacterium tuberculosis H37Rv]
 gi|13883027|gb|AAK47557.1| DNA-binding response regulator, LuxR family [Mycobacterium
           tuberculosis CDC1551]
 gi|25992275|gb|AAN77131.1| putative response regulator [Mycobacterium bovis]
 gi|31619905|emb|CAD95249.1| TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY
           LUXR/UHPA-FAMILY) [Mycobacterium bovis AF2122/97]
 gi|121494664|emb|CAL73145.1| Two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124599284|gb|EAY58388.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis C]
 gi|134151272|gb|EBA43317.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507139|gb|ABQ74948.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis H37Ra]
 gi|148722854|gb|ABR07479.1| two component system transcriptional regulatory protein devR
           (luxR/uhpA-family) [Mycobacterium tuberculosis F11]
 gi|224774623|dbj|BAH27429.1| two component transcriptional regulatory protein [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253321669|gb|ACT26272.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417616|gb|EFD14856.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T46]
 gi|289421770|gb|EFD18971.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289440039|gb|EFD22532.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 605]
 gi|289540275|gb|EFD44853.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis K85]
 gi|289545097|gb|EFD48745.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T17]
 gi|289687471|gb|EFD54959.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 02_1987]
 gi|289692396|gb|EFD59825.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T92]
 gi|289695840|gb|EFD63269.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis EAS054]
 gi|289710822|gb|EFD74838.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis GM 1503]
 gi|289714826|gb|EFD78838.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis T85]
 gi|298496402|gb|EFI31696.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308214161|gb|EFO73560.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu001]
 gi|308325136|gb|EFP13987.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu002]
 gi|308329392|gb|EFP18243.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu003]
 gi|308333215|gb|EFP22066.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu004]
 gi|308336672|gb|EFP25523.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu005]
 gi|308340512|gb|EFP29363.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu006]
 gi|308344452|gb|EFP33303.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu007]
 gi|308348448|gb|EFP37299.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu008]
 gi|308353078|gb|EFP41929.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu009]
 gi|308357051|gb|EFP45902.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu010]
 gi|308361006|gb|EFP49857.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu011]
 gi|308364614|gb|EFP53465.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu012]
 gi|323718221|gb|EGB27401.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CDC1551A]
 gi|326902643|gb|EGE49576.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis W-148]
 gi|328459904|gb|AEB05327.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 4207]
          Length = 217

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 6/155 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF-DVARIRIGLM 145
           VR    +  +   ++L R  +L C +  +   +      +          D+  + +   
Sbjct: 55  VRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARA 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +        L D      L+A  +    K   +       LT +E   L  +SEG T+ +
Sbjct: 115 VKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLS-----GLTDQERTLLGLLSEGLTNKQ 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           IA  + ++  TV NY++ ++ K   + R+ A  +A
Sbjct: 170 IADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFA 204


>gi|326446553|ref|ZP_08221287.1| response regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 206

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 7/166 (4%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +  +  +E  +    L+RP      V   L E+             L    A     L
Sbjct: 44  DRLDEVVAAELRRISRGLERPV---VLVARELREDDLLTVVECGVRAILWRHEATEARLL 100

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----FELTGREVECLTWISEG 200
             +    R      +  +  L      + +      G        +  REV+ L  I++G
Sbjct: 101 KAVHRAARGESDLPIDLLNQLLTQVGRLRRCGSEESGTGSVPLLGMAPREVDVLRLIADG 160

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + +I+  L  S  T+ N +  +M +     R+ A+A+A+R   +
Sbjct: 161 LDTRQISQKLAYSERTIKNILHGVMTRLQLSNRAHAVAFALREGYI 206


>gi|325964344|ref|YP_004242250.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470431|gb|ADX74116.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 226

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 141 RIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +IG   L    R + R + L+  G+       + ++  V    +  L+ +E + L  + +
Sbjct: 117 QIGNNDLAGAIRRVARGESLFAPGVKERALNGLLEAAPVDPRLE-SLSLQERKVLALVGQ 175

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G T+ +I   L ++  TV NY+++++ K   + R+ A  Y
Sbjct: 176 GMTNRQIGQELFLAEKTVKNYVSAMLAKLGFERRTQAAVY 215


>gi|319785539|ref|YP_004145015.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171427|gb|ADV14965.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 219

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 32/53 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++   L  ++EG  + +IA  LG+S  T+  ++++I++K    +R+ A+ 
Sbjct: 153 LTPQQTRVLGMLAEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVI 205


>gi|258620431|ref|ZP_05715469.1| Transcriptional regulator [Vibrio mimicus VM573]
 gi|258625644|ref|ZP_05720523.1| Transcriptional regulator [Vibrio mimicus VM603]
 gi|262170370|ref|ZP_06038048.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
 gi|258581882|gb|EEW06752.1| Transcriptional regulator [Vibrio mimicus VM603]
 gi|258587310|gb|EEW12021.1| Transcriptional regulator [Vibrio mimicus VM573]
 gi|261891446|gb|EEY37432.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
          Length = 209

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|228991885|ref|ZP_04151821.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228767614|gb|EEM16241.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 189

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            + I+ D+L EI L+   +   +    + + +  ELT  E + L  +  G    EIA +L
Sbjct: 90  NKNIMPDKLLEI-LIKINEGICYFPMSMDYVE--ELTDSEKQILQLLCGGYKRKEIATML 146

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             S  T++N+I  +  K    +   A+   ++   +
Sbjct: 147 YASERTISNHIQHMFDKLDVSSSLEAVTKGIQLGYI 182


>gi|284990174|ref|YP_003408728.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063419|gb|ADB74357.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 201

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 16/118 (13%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +      VA +   +  +    R+I RD       + A                  L
Sbjct: 98  AAGFLVKDAPVAELAKAIRAVVAGERVIDRDLAAAALAIGA----------------TPL 141

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + RE + L   ++G T  +IA  L +S  TV NY++S + KT  +TR  A   A    
Sbjct: 142 STREADVLREAADGATVADIARRLFLSEGTVRNYLSSAIGKTGARTRVEAARVAADKG 199


>gi|315649523|ref|ZP_07902608.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315274996|gb|EFU38371.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 236

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E + L ++ +GKT+ EI  IL I   T++N++ SI RK   K R  A   A +  +
Sbjct: 152 LTPQERKILCYVYQGKTTSEIHRILNIEEKTIDNHVTSINRKLQVKNRREAAQVANKKGL 211

Query: 246 V 246
           +
Sbjct: 212 L 212


>gi|282862598|ref|ZP_06271659.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282562284|gb|EFB67825.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 980

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             G   +L+ RE E    + +G+ + +IA  L +S  TV +++A IMRK    +R+
Sbjct: 908 RLGYGDQLSPREQEVARLVVQGRANRDIAESLVLSTRTVEHHVARIMRKLNATSRT 963


>gi|269215660|ref|ZP_06159514.1| transcriptional regulator, LuxR-family [Slackia exigua ATCC 700122]
 gi|269131147|gb|EEZ62222.1| transcriptional regulator, LuxR-family [Slackia exigua ATCC 700122]
          Length = 511

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 34/80 (42%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E     A  A   +S+       F LT RE E     ++G TS  IA  L IS +TV  +
Sbjct: 421 EPADPVAAFAETLESHFDDLSAQFGLTPREREIAMLTAQGFTSTYIADKLVISASTVRFH 480

Query: 221 IASIMRKTATKTRSGAIAYA 240
             ++ RK    +R   I  A
Sbjct: 481 QQNVYRKLDIHSRHELIELA 500


>gi|256394916|ref|YP_003116480.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361142|gb|ACU74639.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 895

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           R+ L+        +  + +     LAA                  LT RE E    +S G
Sbjct: 788 RVALLAEQCGAGRLATEAVRHRSRLAALADAQPDPQSTSA----PLTAREREIANLVSTG 843

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            T+  IA  L +S  TV +++  I RK     R+    
Sbjct: 844 MTNTAIAEKLFLSVRTVESHLRQIYRKLDVPNRAALTR 881


>gi|297200745|ref|ZP_06918142.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197712315|gb|EDY56349.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 202

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            + +   RL EI                 D     D  LT RE E L   ++G    EIA
Sbjct: 104 PKTVSAQRLAEIIRTVHAGNRYVDPELAADAISAGDSPLTVREAEVLELAADGAPVAEIA 163

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
               +S+ TV NY++S + K   + R  A+  A    
Sbjct: 164 ERAALSQGTVRNYLSSAVSKLGAENRHAAVRLARERG 200


>gi|72160692|ref|YP_288349.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71914424|gb|AAZ54326.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 201

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 51/154 (33%), Gaps = 16/154 (10%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L      +  +     L    F          A     + +    V ++   +  ++  
Sbjct: 62  GLEAAAALHQEVPSCGILILTSFGRPGYLRRALAAGARGFLAKDAPVDQLAGAIRTVYRG 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           GR I  +       LAA         D     +  LT RE++ L   S G +   IA  L
Sbjct: 122 GRFIDSE-------LAA---------DAMMAGENPLTAREIDVLRAASTGASVAAIARTL 165

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +S  TV NY++S + K     R  AI  A    
Sbjct: 166 HLSEGTVRNYLSSAISKLGEANRIAAIRKANAMG 199


>gi|295837248|ref|ZP_06824181.1| two component system response regulator [Streptomyces sp. SPB74]
 gi|295826422|gb|EFG64839.1| two component system response regulator [Streptomyces sp. SPB74]
          Length = 236

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++  IA  LG+S  TV  Y++ ++ + A   R  A   A    +
Sbjct: 171 LTPREREVLAGLAAGLSNAGIARRLGLSEATVKAYVSVVLDRLAVPNRVRAAVLAHEAGL 230


>gi|238752983|ref|ZP_04614443.1| Two-component response regulator [Yersinia rohdei ATCC 43380]
 gi|238708805|gb|EEQ01063.1| Two-component response regulator [Yersinia rohdei ATCC 43380]
          Length = 210

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 79  SSDWPFDLVR-CMALSEKDKYYNV--LQRPTELFCPVFHTLPEN----ITPPAGMDNRYC 131
             + P DLV   + L   D +  +  LQ+       +F +        +       N + 
Sbjct: 44  LKNNPVDLVIIDIELPNFDGFSLLKKLQQRGYTGKSLFLSAKNEQVFAVRALQAGANGFI 103

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S   D++ I      +         + L ++            S      +   L+ RE+
Sbjct: 104 SKNKDISEILFAAQNVLRGYSFFPSETLTQLA--------GQPSNHDPVNRARLLSEREI 155

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 156 NVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|229524681|ref|ZP_04414086.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229338262|gb|EEO03279.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
          Length = 209

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|256830064|ref|YP_003158792.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579240|gb|ACU90376.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 222

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 10/162 (6%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R + L+  D    ++         +        +     ++    +   +  +  G 
Sbjct: 67  ELTREIRLARPDLPVLIVS-MHAKLDFIAAAFQAGASGYMSKESGGEGILQAIETVLSGG 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L      +    L  +  ++  +A   K+ D  +G    L+ RE + +  ++EG T +
Sbjct: 126 QYLDGS---LSPSVLRRLSDISGRKA---KTVDASYG---SLSLREQQVMRLLAEGLTPE 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +SR TV N+  +IM K   K+    + +A R  ++
Sbjct: 177 EIAAKLFVSRKTVLNHRYAIMTKLGIKSPVAFVRHAARLGLI 218


>gi|224538294|ref|ZP_03678833.1| hypothetical protein BACCELL_03185 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520079|gb|EEF89184.1| hypothetical protein BACCELL_03185 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 204

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +T + +G T+  IA  L +S +TV  +  +I RK    + +G   YA+ N +
Sbjct: 135 LSQREKEIITCVVKGMTNKAIADQLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|254391946|ref|ZP_05007138.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294817739|ref|ZP_06776381.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|197705625|gb|EDY51437.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294322554|gb|EFG04689.1| response regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 216

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 7/166 (4%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +  +  +E  +    L+RP      V   L E+             L    A     L
Sbjct: 54  DRLDEVVAAELRRISRGLERPV---VLVARELREDDLLTVVECGVRAILWRHEATEARLL 110

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----FELTGREVECLTWISEG 200
             +    R      +  +  L      + +      G        +  REV+ L  I++G
Sbjct: 111 KAVHRAARGESDLPIDLLNQLLTQVGRLRRCGSEESGTGSVPLLGMAPREVDVLRLIADG 170

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + +I+  L  S  T+ N +  +M +     R+ A+A+A+R   +
Sbjct: 171 LDTRQISQKLAYSERTIKNILHGVMTRLQLSNRAHAVAFALREGYI 216


>gi|158333259|ref|YP_001514431.1| LuxR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158303500|gb|ABW25117.1| transcriptional regulator, LuxR family [Acaryochloris marina
           MBIC11017]
          Length = 227

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 13/170 (7%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD------ 136
           P           +D+     Q   +       +L     P  GMD+ + +   +      
Sbjct: 56  PVSFCDRYQAIGRDQDITSQQMLRQHVPVKLCSLSTQKHPSNGMDDLFRTYHIEHGVVAP 115

Query: 137 ---VARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKS---YDVHWGKDFELTGR 189
                ++  G+  L  +G    + R L  I  L  + A  F +             LT R
Sbjct: 116 ILGSGQLLGGIYFLRHQGYPPFKTRDLLRISTLCQHLAVQFTTLRFNHQASANHAVLTDR 175

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E+E +  +++G T+ EI+  L IS + V   +  + RK     ++  +A 
Sbjct: 176 ELEIVDLVAQGFTNREISHYLHISVDGVKQRLKRLYRKVGVANQAALVAK 225


>gi|186476730|ref|YP_001858200.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184193189|gb|ACC71154.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 293

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 81/231 (35%), Gaps = 23/231 (9%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           VLN + E+R    + L  + D  AR             +  L   +     LL+ W+ + 
Sbjct: 5   VLNSDAERREGLKA-LLRQVDRQARFGEAQDWPQAERTLRRLQPDL-----LLIDWEDWM 58

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMD 127
                  +  + P      + ++      +       +   V   +P +  P      ++
Sbjct: 59  SPADARALLVNHP-----GLPVAVLVDDISPAHVRAFVEKGVLGVIPRSTDPRVIVRALE 113

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                + +  A          P  R+   D    + L A       K  ++  G    L+
Sbjct: 114 MVLLGVHYIPAGALSLDGRASPGRRVRQLDDPRSLELFAT-----PKRSNLTGG----LS 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ + +  +  G T+  IA  LGIS  TV  ++A+I ++     R+ A+A
Sbjct: 165 PRQEQIMRCVHMGSTNKMIARALGISEGTVKIHLATIFQQLGAPNRAAAVA 215


>gi|56697226|ref|YP_167591.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56678963|gb|AAV95629.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 220

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   + D   +   + L+      + R  L          A +    D     + 
Sbjct: 97  AGADGFIPKSADPQVLIHAVSLILEGEIFLPRSYLQ-----GGRMAEVATPLDSSERPEQ 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT R+ +    + +G  + EIA +L +S +TV +++++I ++  T +RS  IA
Sbjct: 152 NLTPRQRDVFELMCKGLANKEIARLLDLSESTVKSHVSAIFKQIGTTSRSKTIA 205


>gi|332879917|ref|ZP_08447602.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332682128|gb|EGJ55040.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 218

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 9/211 (4%)

Query: 31  DLLARMIPLDCTVSWTMRMY-ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           + + ++  L+   S+ + +      Y   + ++    +  QE  ++ +V  D   ++VR 
Sbjct: 13  EYIPQIKFLEEAGSFAVFLSDRFGHYYYVTEYVTEDIEAPQELNIEKLVHPD-DLEVVRR 71

Query: 90  MA--LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           +   + E        ++    +      L +          R  +   D   + +G++ L
Sbjct: 72  IDKKVWEFLDTLPEEEKLAYKYIYELRVLEKGKYIRMIYQTRLLAFE-DDNFLAMGMIDL 130

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            P+       R      L     +    + +    D  LT RE E      EG  S EI+
Sbjct: 131 APEQSANTSVRFQIKNCLT----DEIVPFAIESATDALLTPREREIFALAKEGMFSKEIS 186

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             L IS +TVN +  +I+ K        AI 
Sbjct: 187 EKLNISIHTVNRHRQNILEKLQVDNIIEAIR 217


>gi|312141711|ref|YP_004009047.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311891050|emb|CBH50369.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 257

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195
            R R  + L       +    L  + LLA + + + ++ D    +D    LT R+ +   
Sbjct: 145 GRARALVGLFDGDDSALGTRDLATLRLLARHLSALTRNLDTAPRRDPYAALTERQRDVAR 204

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +++G ++  IA  L ++ +TV  Y++ I+  T   +R+   
Sbjct: 205 LVADGMSNAAIARRLMLAEDTVKKYVSRILAATGCASRTQLA 246


>gi|296138738|ref|YP_003645981.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026872|gb|ADG77642.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 214

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 157 DRLWEIGLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           D L    L     A   +         G   ELT RE E    ++ G+T+ EIA  L IS
Sbjct: 121 DALISPELTVDLLARNRRAGSREPAAAGAIAELTPREREVAACVARGRTNAEIADELVIS 180

Query: 214 RNTVNNYIASIMRKTATKTRSG 235
             TV  ++++I ++   + R  
Sbjct: 181 LGTVKTHLSAIGQRLGARNRVE 202


>gi|289642992|ref|ZP_06475125.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507214|gb|EFD28180.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 216

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 54/165 (32%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
            P  +V  + L +      + +            L  +       +         V +  
Sbjct: 51  QPDIVVLDIGLPDGSGISAIGRILGASPASRVLMLTMHDDVAYLREAFASGALGYVLKAA 110

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             + L+     +   +R     L AA                  L+ RE E L  ++ G 
Sbjct: 111 ADIELIQAIHDVARGERYVHPTLGAALLGRDTNVEGRSVSTVAGLSEREAEILRLLALGH 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ E+A +L +S  TV  Y   + +K   ++R+  +  A    +V
Sbjct: 171 TNPEMAEVLDLSVRTVETYRYRLQQKVGLRSRAELVRLAREMGLV 215


>gi|260770808|ref|ZP_05879737.1| transcriptional regulator LuxR family [Vibrio furnissii CIP 102972]
 gi|260614045|gb|EEX39235.1| transcriptional regulator LuxR family [Vibrio furnissii CIP 102972]
 gi|315178850|gb|ADT85764.1| transcriptional regulator, LuxR family protein [Vibrio furnissii
           NCTC 11218]
          Length = 209

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|227495115|ref|ZP_03925431.1| response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831567|gb|EEH63950.1| response regulator [Actinomyces coleocanis DSM 15436]
          Length = 202

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +   T RE E LT  ++  T  E+A  L +S  TV N+I++I+ KT  K R+ A   A 
Sbjct: 138 PNSPFTQREKEILTAFTDSATVAEVAAKLFLSPGTVRNHISNIISKTNAKNRAEAARIAK 197

Query: 242 RNNIV 246
            N  +
Sbjct: 198 ENGWI 202


>gi|254420099|ref|ZP_05033823.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196186276|gb|EDX81252.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 203

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D    +   LT  ++  L  +  G+ + +IA  LG+S  T+  ++ S+ RK     R+
Sbjct: 132 ADDDLPARVASLTPSQLRILEGLKAGRLNKQIAFDLGVSEATIKAHLTSVFRKLGVHNRT 191

Query: 235 GAIAYA 240
            A+  A
Sbjct: 192 QAVILA 197


>gi|126732495|ref|ZP_01748294.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Sagittula stellata E-37]
 gi|126707134|gb|EBA06201.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Sagittula stellata E-37]
          Length = 253

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT  +IA I+G+++ T+  ++         +T + A+A A  +N
Sbjct: 188 LTPRQREALEWVGDGKTMQDIAQIMGLTQATIEKHLRLARETLNVETTAQAVAKAAFHN 246


>gi|146309054|ref|YP_001189519.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145577255|gb|ABP86787.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 216

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT R+ E L  +  G ++ EIA  L IS  TV  +++S++R     TR
Sbjct: 155 QLTPRQQEVLRLVVRGLSNKEIARQLDISPFTVRIHVSSLLRTLDVGTR 203


>gi|149909623|ref|ZP_01898276.1| DNA-binding nitrate/nitrite response regulator [Moritella sp. PE36]
 gi|149807327|gb|EDM67280.1| DNA-binding nitrate/nitrite response regulator [Moritella sp. PE36]
          Length = 215

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           + I       + Y     +   +   L  +    + +          L  Y  +     +
Sbjct: 93  DVIKLINAGADGYLLKDSEPDLLLEQLHDVLSGQQALSES-------LVGY-LDCLHEDN 144

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               K  +LT RE + L  IS+G ++  +A  L IS  TV  ++ S+++K    +R  A 
Sbjct: 145 NFEEKLAKLTKRENQILLEISKGYSNKHVASNLHISEGTVKVHVKSLLKKLEASSRVEAA 204

Query: 238 AY 239
             
Sbjct: 205 VM 206


>gi|153208911|ref|ZP_01947130.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218476|ref|YP_002305263.1| response regulator [Coxiella burnetii CbuK_Q154]
 gi|120575632|gb|EAX32256.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012738|gb|ACJ20118.1| response regulator [Coxiella burnetii CbuK_Q154]
          Length = 217

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 107 ELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           E+   V   +   + P   ++     + + + D A +   +  +    R I       + 
Sbjct: 75  EIKILVVTAMEGELLPMRLLEVGVRGFITKSSDSAELERAIRAVHSGQRYIGSAIASRLA 134

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L     A              +L+ R++E L  +++G  ++ IA  L I+  TVN++   
Sbjct: 135 LSKTTAAK---------SPFDQLSNRQIEVLLLLAKGMNAESIAKQLHITAKTVNSHRYR 185

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +  K   K     I  AV+  ++
Sbjct: 186 MFEKLGVKNDVELIKLAVQYGLI 208


>gi|86741724|ref|YP_482124.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86568586|gb|ABD12395.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 950

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           G   +LT +E      +++G TS E+A  L IS  TV+ ++ +I RK    +R   
Sbjct: 883 GNTDDLTAQETHIARLVADGATSKEVAARLFISPRTVDAHLRNIFRKLGITSRRQL 938


>gi|239831042|ref|ZP_04679371.1| Monoamine regulon transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239823309|gb|EEQ94877.1| Monoamine regulon transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 241

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE+E +  I  GK++  IA  LG+S  TV  ++ +IM+K     R+     
Sbjct: 176 LTAREIEVVHAIRIGKSNKIIAFELGMSEGTVKAHVHNIMKKIGAANRTEVACK 229


>gi|227820767|ref|YP_002824737.1| predicted two-component transcriptional regulator, LuxR family
           [Sinorhizobium fredii NGR234]
 gi|227339766|gb|ACP23984.1| predicted two-component transcriptional regulator, LuxR family
           [Sinorhizobium fredii NGR234]
          Length = 215

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 18/164 (10%)

Query: 89  CMALSEKDKYYNVLQ-RPTELFCPVF----HTLPENITP-PAGMDNRYCSLTFDVARIRI 142
            + +        ++  R      PV     H  P  I          + S +  +  IR 
Sbjct: 57  DLTMPGVSGLSGLIALRAEFPSLPVMIVSAHDDPATIHRAIDLGAAGFLSKSAGIEEIRD 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WGKDFELTGREVECLTWISEG 200
           G+  +             EI + A Y  N     +V     +   LT ++   L+ ++EG
Sbjct: 117 GIGKVIAG----------EIFVPAGYDQNQEYEPEVADLLHRLQTLTPQQSRVLSMLAEG 166

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             + +IA  LG+S  T+  ++++I+ K    +R+ A+    +  
Sbjct: 167 LLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKLG 210


>gi|226310877|ref|YP_002770771.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093825|dbj|BAH42267.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 216

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 38/65 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  +  RE + L  I++G+++ E++ IL +S+  V   +  I  K   ++R+ AI+ A+
Sbjct: 147 EEVSINEREQQILLEIAKGRSNKELSEILLMSQRNVEYQLTRIFGKLQVRSRAEAISEAI 206

Query: 242 RNNIV 246
           +  I+
Sbjct: 207 KRGII 211


>gi|325271130|ref|ZP_08137690.1| response regulator [Pseudomonas sp. TJI-51]
 gi|324103735|gb|EGC01022.1| response regulator [Pseudomonas sp. TJI-51]
          Length = 241

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD- 177
           +   P GM +      FD  R    L +     +     R  ++ +L A      +S   
Sbjct: 118 DFLKPCGMHHGINVFFFDQGRDIGDLRIWRSADQPSFNYR--DVAMLNALTPYFEQSLSC 175

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V       LT REV  +  ++ G +  EIA ++GI   TV  ++ + M KT    R+   
Sbjct: 176 VSPPPGVGLTRREVSVIEHVAAGCSDKEIARLMGIGFTTVRTHLKNAMHKTGASNRTELA 235

Query: 238 AY 239
             
Sbjct: 236 VR 237


>gi|91786213|ref|YP_547165.1| LuxR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91695438|gb|ABE42267.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666]
          Length = 227

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 29/53 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +L+ RE E    +S G+++ E+A ++ IS  TV  ++ ++  K   + R   +
Sbjct: 156 QLSAREAEVAHAVSAGRSNKEVATLMHISERTVKAHLGAVFEKLGVRDRLQLV 208


>gi|16519697|ref|NP_443817.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a
           [Sinorhizobium fredii NGR234]
 gi|2495425|sp|P55407|TRAR_RHISN RecName: Full=Probable transcriptional activator protein traR
 gi|7465594|pir||T02771 probable transcription activator traR - Rhizobium sp. plasmid
           pNGR234a
 gi|158429605|pdb|2Q0O|A Chain A, Crystal Structure Of An Anti-Activation Complex In
           Bacterial Quorum Sensing
 gi|158429606|pdb|2Q0O|B Chain B, Crystal Structure Of An Anti-Activation Complex In
           Bacterial Quorum Sensing
 gi|2182351|gb|AAB91637.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a
           [Sinorhizobium fredii NGR234]
          Length = 236

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 28/235 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+  +          + + +     G   F  ++ D  Q +         +P        
Sbjct: 10  LIDMLEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDGTQVRTF-----HSYPGPWESIYL 64

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------------NRYCSLTFDVAR 139
            S+      VL          F T   +  P  G                 C +T  V  
Sbjct: 65  GSDYFNIDPVLAEAKRRRDVFFWTA--DAWPARGSSPLRRFRDEAISHGIRCGVTIPVEG 122

Query: 140 IRIGLMLL---FPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                M+L    P+ ++ +   L      ++ ++  YQ  +  +  V   K   L+ RE+
Sbjct: 123 SYGSAMMLTFASPERKVDISGVLDPKKAVQLLMMVHYQLKIIAAKTVLNPKQM-LSPREM 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            CL W S+GKT+   A + GI+  TV +Y+     K   ++    +A A    +V
Sbjct: 182 LCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV 236


>gi|116691709|ref|YP_837242.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|170736291|ref|YP_001777551.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|206562500|ref|YP_002233263.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|254249030|ref|ZP_04942350.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|116649709|gb|ABK10349.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
 gi|124875531|gb|EAY65521.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|169818479|gb|ACA93061.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
 gi|198038540|emb|CAR54498.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 210

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 15/161 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           + P  LV  + + EK  +    +        PV         P              V  
Sbjct: 48  NLPACLVLDVRMPEKSGFDVQAELNARGATLPVIFVSGHGDIP------------MSVRA 95

Query: 140 IRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           ++ G +    K     +  +R+     LA  +  + + +     +   LT RE E L  +
Sbjct: 96  LQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHAVSQRHRELRQRLDALTAREKEVLRGV 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK S +IA  L IS  TV+ + ASI  K    + +  + 
Sbjct: 156 VDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAALVR 196


>gi|269217352|ref|ZP_06161206.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC
           700122]
 gi|269129489|gb|EEZ60574.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC
           700122]
          Length = 663

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 32/61 (52%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           FK      G  F L+ RE E L +I  G +S  IA  L IS NTV  ++ +I RKT   +
Sbjct: 592 FKQKAEEIGDAFRLSPREREILGYIGRGHSSVYIAKTLVISENTVYTHVRNIYRKTGADS 651

Query: 233 R 233
           R
Sbjct: 652 R 652


>gi|153007612|ref|YP_001368827.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559500|gb|ABS12998.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 241

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE+E +  I  GK++  IA  LG+S  TV  ++ +IM+K     R+     
Sbjct: 176 LTAREIEVVHAIRIGKSNKIIAFELGMSEGTVKAHVHNIMKKIGAANRTEVACK 229


>gi|297581538|ref|ZP_06943461.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297534376|gb|EFH73214.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 209

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 144 AEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|332521658|ref|ZP_08398111.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
 gi|332042747|gb|EGI78947.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
          Length = 208

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 15/139 (10%)

Query: 112 VFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
           +F T PE    +         Y S T D+  I+  ++  +     +            A 
Sbjct: 80  IFSTQPEEVYALNAIKLGAAGYLSKTTDIITIKDAIIKAYMGNTYLSE----------AM 129

Query: 169 QANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
              + +S     G+ F  +L+ RE+E L  ++ GK + EIA  L I+  TV+ Y A +M+
Sbjct: 130 TKRLMQSKKSSEGQSFFKKLSNREIEVLKLLTSGKRNKEIAQELDINEKTVSTYRARLMK 189

Query: 227 KTATKTRSGAIAYAVRNNI 245
           K         +  A +  +
Sbjct: 190 KLNVTNLVDLVNQAKQLAL 208


>gi|269218650|ref|ZP_06162504.1| DNA-binding response regulator, LuxR family [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211761|gb|EEZ78101.1| DNA-binding response regulator, LuxR family [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 215

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +    H     +LT  E   L  I +G ++ EI   LG++  TV N+I S++ K   + R
Sbjct: 137 RRRADHADPTADLTPSERRVLELIGDGLSNREIGDRLGVAEKTVKNHITSLLSKMGLQRR 196

Query: 234 SGAIAY 239
           +   A+
Sbjct: 197 TQVAAW 202


>gi|326201001|ref|ZP_08190873.1| transcriptional regulator, LuxR family [Clostridium papyrosolvens
           DSM 2782]
 gi|325988569|gb|EGD49393.1| transcriptional regulator, LuxR family [Clostridium papyrosolvens
           DSM 2782]
          Length = 256

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 4/121 (3%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK----DFE 185
           + S+        IG + +   G  + ++ +    LLA    N  +       K      +
Sbjct: 131 FFSVPICFRNRIIGSIAVASTGIPLKKELIIITELLAYQVTNEVEVAGQGMAKRLVSQMK 190

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + +++  L  +++G T   +A+  GIS NTV  +   I RK  T     A+  A++ N+
Sbjct: 191 FSEKQLLVLKLLAKGMTEKAVAIDSGISINTVRYHKKIIFRKLDTGNVIDAVVKALKYNL 250

Query: 246 V 246
           +
Sbjct: 251 I 251


>gi|239930320|ref|ZP_04687273.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438665|ref|ZP_06578055.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341560|gb|EFE68516.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 206

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            + +   RL EI                 D     D  LT RE E L   ++G    EIA
Sbjct: 108 PKTVSAQRLAEIIRTVHAGNRYVDPELAADAIAAGDSPLTAREAEVLELAADGAPVAEIA 167

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
               +S+ TV NY++S + K   + R  A+  A    
Sbjct: 168 ERAALSQGTVRNYLSSAVSKLGAENRHTAVRLARERG 204


>gi|253699116|ref|YP_003020305.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251773966|gb|ACT16547.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 216

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 64/190 (33%), Gaps = 15/190 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    + R        +D  +      D  R +           L   ++    V   L
Sbjct: 37  GAEAIRIAREKRPDVTVMDITMPDLNGIDATRAIVAEWPQARVLALSMESDRRF-VVEVL 95

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLL-FPKGRIILRDRLWEIGLLAAYQANMFKS 175
                     D+ +  L   +  +  G   L      +++++ L  I             
Sbjct: 96  KAGANGYVLKDSAFAELATAIRAVASGETYLPSRVTTLLIKEYLQRI------------- 142

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D        L+ RE E L  I++GK + EIA   G+S  TV N   SIM+K    + + 
Sbjct: 143 PDEVPATYENLSLREREILQLIADGKNAKEIAFSFGVSVKTVENQRHSIMKKLDLFSIAE 202

Query: 236 AIAYAVRNNI 245
              YAVR  +
Sbjct: 203 LTKYAVRQGL 212


>gi|74317417|ref|YP_315157.1| transcriptional regulator NarL [Thiobacillus denitrificans ATCC
           25259]
 gi|74056912|gb|AAZ97352.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 219

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 6/137 (4%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             +   V     + I       + Y     +   +   L         I        GL 
Sbjct: 82  RVIMLTVSDQAEDLIAALQAGADGYLLKDMEPEDLMQQLAEAARGKITISE------GLT 135

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               +++ +        D  LT +E   L  + +GK++  IA  +GI+  TV  ++  ++
Sbjct: 136 QLLVSSLREKTRPTSLADAGLTEQENRILDHLVDGKSNKLIARDMGIAEGTVKVHVKHLL 195

Query: 226 RKTATKTRSGAIAYAVR 242
           +K   ++R  A  +A R
Sbjct: 196 KKLNLRSRVEAAVWADR 212


>gi|330985150|gb|EGH83253.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 215

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 152 LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAA 203


>gi|319900177|ref|YP_004159905.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
 gi|319415208|gb|ADV42319.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P
           36-108]
          Length = 248

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ R++E ++ +++G  S +IA  L IS +TV+ +   I+        + A+  A+R N+
Sbjct: 188 LSQRQLEIVSLLAKGYGSKQIADKLCISVHTVSRHRQDILSLLNVTNTAAAVEIALRMNL 247

Query: 246 V 246
           +
Sbjct: 248 I 248


>gi|229494690|ref|ZP_04388448.1| transcriptional regulatory protein UhpA [Rhodococcus erythropolis
           SK121]
 gi|229318357|gb|EEN84220.1| transcriptional regulatory protein UhpA [Rhodococcus erythropolis
           SK121]
          Length = 204

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 71  EQKLDSIVS--SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           E   D++V+     P   V  + ++  D          E    +  T+   ++       
Sbjct: 37  ESGEDAVVAAAKHQPDVAVLDLQMAGIDG--------IETAQQIAQTVSGCVSIIVTSHG 88

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
           R   L   ++    G +         L + +  +     Y      +  +  G D  LT 
Sbjct: 89  RPGYLKKALSAGVRGFLP-KTTPAATLAEVVRSVHAGGRYVDPSLAAEAIGAG-DSPLTP 146

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L + ++G + ++IA    +S  T  NY++S + K     R  A   A R   +
Sbjct: 147 READVLEYAADGASIEQIASRAHLSAGTTRNYLSSAVTKLGAANRHEAAVIARRQGWI 204


>gi|185177925|pdb|3C3W|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr
 gi|185177926|pdb|3C3W|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr
          Length = 225

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 6/155 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF-DVARIRIGLM 145
           VR    +  +   ++L R  +L C +  +   +      +          D+  + +   
Sbjct: 55  VRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARA 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +        L D      L+A  +    K   +       LT +E   L  +SEG T+ +
Sbjct: 115 VKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLS-----GLTDQERTLLGLLSEGLTNKQ 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           IA  + ++  TV NY++ ++ K   + R+ A  +A
Sbjct: 170 IADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFA 204


>gi|323498768|ref|ZP_08103754.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|323316130|gb|EGA69155.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 211

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVI 202


>gi|317405267|gb|EFV85597.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 186

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT RE E   +++ G +  EIA+ L IS  TV  + A IMRK   K  +  ++ 
Sbjct: 124 NLTRREREISAYVANGLSCKEIAMRLDISYRTVEVHRARIMRKLDAKNTAELVSK 178


>gi|302538500|ref|ZP_07290842.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. C]
 gi|302447395|gb|EFL19211.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. C]
          Length = 210

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 2/143 (1%)

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
           +Y         +    F      +         +   + +   +  G+  +      +  
Sbjct: 68  RYAGPSPGRGVVMLTTFGEDEYILRALGEGAAGFLIKSGEPEELIAGVRAVADGAAYLSP 127

Query: 157 DRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                +   L A               K   LTGRE E L ++  G ++ ++A  LG++ 
Sbjct: 128 KVAARVVAHLAAGGAGAAAARRSAARAKVEALTGREREVLGYLGSGFSNGQVARRLGLAE 187

Query: 215 NTVNNYIASIMRKTATKTRSGAI 237
            TV  +++SI+ +     R+ A 
Sbjct: 188 GTVKAHVSSILARLGVDNRAAAA 210


>gi|288960730|ref|YP_003451070.1| two-component response regulator [Azospirillum sp. B510]
 gi|288913038|dbj|BAI74526.1| two-component response regulator [Azospirillum sp. B510]
          Length = 216

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT +++  L  +  GK + EIA  L I+  TV  ++++I++K    +R+ A+  A R
Sbjct: 154 LTAQQLRVLELLGTGKLNKEIAFDLSITETTVKAHVSAILQKLKVYSRTQAVVIANR 210


>gi|126666054|ref|ZP_01737034.1| probable transcriptional regulator [Marinobacter sp. ELB17]
 gi|126629376|gb|EAZ99993.1| probable transcriptional regulator [Marinobacter sp. ELB17]
          Length = 257

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 169 QANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                ++ D     +    LT R++  L  +S+G+++ +IA  L I+  TV  ++++I+R
Sbjct: 173 AGRRRRNDDNPVSPELLNSLTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILR 232

Query: 227 KTATKTRSGAIAYA 240
           K +   R  AI  A
Sbjct: 233 KLSVHNRVQAILSA 246


>gi|126462017|ref|YP_001043131.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103681|gb|ABN76359.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 235

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +++  L  I +G+ +  I+  L I+  TV  +IA+IM K   + R+ A   A +  I
Sbjct: 173 LTPQQMNILRLICQGRPNKLISYELSIAEATVKTHIAAIMTKINVRNRTQAALLASKARI 232


>gi|320531208|ref|ZP_08032193.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136577|gb|EFW28540.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 223

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 19/161 (11%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L+  + +   D          +L   V   +PE         +   ++   + R   G +
Sbjct: 68  LITDVRMPGMDG--------LQLLTKVKQGMPEVAVIVLTSFDDDEAMRTALDRKANGFL 119

Query: 146 LLFPKGRIILRDRLW--------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           L       ++R  +              +   +   +           +T  E   L  +
Sbjct: 120 LKDSSAEEVIRAVIAAHNGGTTISPATTSRLVSQYLRPV---PSSRPGVTEAEQAVLDLL 176

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            EG ++ EIA  L IS  TV ++++ +M+K    +R   + 
Sbjct: 177 CEGYSNAEIADQLFISEATVKSHVSHLMKKYGVSSRLKLVV 217


>gi|302340566|ref|YP_003805772.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637751|gb|ADK83178.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 214

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE E    IS G  + EIA  L I+  TV NY++SI+ K   K R   I  A R
Sbjct: 154 DLTKREKEIFKLISRGYDNTEIADELCIAYQTVRNYVSSIISKLGIKNRYEIIKLANR 211


>gi|300022440|ref|YP_003755051.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524261|gb|ADJ22730.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 218

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVH----WGKDFELTGREVECLTWISEGKTSDEI 206
            +    DRL E    A  +A   ++ D        +  EL+ R+ + +    +G ++ EI
Sbjct: 105 EKPFSPDRLIESISSAIGEAESQRNQDQEKMRLAARINELSDRQRQVMDLAVKGHSNKEI 164

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           A+ L IS  TV  Y A +M +T  +  +  +  AVR
Sbjct: 165 ALALKISPRTVETYRAWVMERTGARNIADLVRIAVR 200


>gi|228915760|ref|ZP_04079341.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843862|gb|EEM88930.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 191

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  +  K    +   A+   ++  
Sbjct: 126 ELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLG 185

Query: 245 IV 246
            +
Sbjct: 186 YI 187


>gi|257791860|ref|YP_003182466.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257475757|gb|ACV56077.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 191

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAY--QANMFKSYDVHWGKDFELTGREVE 192
             A +   L   + +   + R R+ ++ GL+  Y  +    +S   H  + F+LT RE E
Sbjct: 78  CSAAVGALLRKTWAQTDELERRRVEDLRGLVDRYRTEEGSIESRCAHAARTFDLTRREEE 137

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            L  + +G T  EIA  L +S +TV  +I ++ RKT    +   +
Sbjct: 138 VLALLLKGCTRSEIARELFVSGDTVKTHIRNLYRKTGVTGKDELV 182


>gi|167463449|ref|ZP_02328538.1| Response regulator (CheY-like recever domain and HTH DNA-binding
           domain) [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 8/153 (5%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARIRIGLMLLFPK 150
             +    + ++   +   V  T  ++      + N  C          +I  G+  ++  
Sbjct: 70  GVEGTKRIHEQFPSIKILVLATFDDDEFIIEALRNGACGYLLKNVPPEQIVHGIKTVYQG 129

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I  D   ++           ++ D      + LT  E   +  ISEG ++ EIA  L
Sbjct: 130 NWLIHPDISKKLTGYIQAPTPFLQTLD-----QYGLTKAEQAIVEKISEGLSNKEIAGTL 184

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +S  TV NYI+ I+ K + + R+    + ++ 
Sbjct: 185 FLSEETVKNYISGILDKFSLRDRTQIALFHLKQ 217


>gi|54024795|ref|YP_119037.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016303|dbj|BAD57673.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 350

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E L  +++G T  +I   L +S +TV+ +IA+   K   ++R
Sbjct: 293 LTEREREILRLVADGLTDAQIGERLTLSPHTVHRHIANARIKLGVRSR 340


>gi|84502481|ref|ZP_01000617.1| branched-chain amino acid ABC transporter, periplasmic
           branched-chain amino acid-binding protein, putative
           [Oceanicola batsensis HTCC2597]
 gi|84389293|gb|EAQ02090.1| branched-chain amino acid ABC transporter, periplasmic
           branched-chain amino acid-binding protein, putative
           [Oceanicola batsensis HTCC2597]
          Length = 623

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 5/155 (3%)

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           D+    L     +        P      A    R+  L     R+         +   I 
Sbjct: 25  DQTGQALSVAATVMRDGTVMAPTEAGEEAAFFERHPVLAEHARRLLWS-GRTNVRYSYIS 83

Query: 156 RDRLWEI----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            D +W +     L   +   + +         F LT RE++ LT ++ G  +  IA  L 
Sbjct: 84  EDDVWHLVSIHALPDGFGDQLGRVVVQRTKPPFRLTLRELDVLTLMTAGHANQHIADCLD 143

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   TV  ++  I+ K    +R+ A   AV   ++
Sbjct: 144 IKLRTVTTHVERILVKMGRLSRTAAATVAVDFGLL 178


>gi|302036405|ref|YP_003796727.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604469|emb|CBK40801.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 234

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 66/196 (33%), Gaps = 26/196 (13%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI----------TPPA 124
           D +V      D+V   +      +         +       +P               P 
Sbjct: 41  DFLVEDGLTPDIVETTSARHAIDHIRTGAWDLVILDLNLPDMPGLEVLRILKSLRPALPV 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
            + + Y    +    IR G +    K R     RL    +L     +   S +     D 
Sbjct: 101 LVVSIYAEEHYSARAIRAGALGYLTKERGPQELRLAVSRILQG--GHYLPSPETEHSLDE 158

Query: 185 E--------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                          L+ RE+E L WI++G+   EIA  L +S  TV+ Y + ++ K   
Sbjct: 159 GPHRNGSSPDTLPATLSDREIEVLQWIAQGRRLTEIAEQLNLSIKTVSTYRSRLLIKLGM 218

Query: 231 KTRSGAIAYAVRNNIV 246
           +T +  I YA+   +V
Sbjct: 219 RTTAELIRYALDQQLV 234


>gi|59712981|ref|YP_205757.1| two-component response regulator [Vibrio fischeri ES114]
 gi|59481082|gb|AAW86869.1| two-component response regulator [Vibrio fischeri ES114]
          Length = 209

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D    K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+
Sbjct: 139 ACDDLATKIAALTPQQYKVLGMLSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNRT 198

Query: 235 GAIA 238
            A+ 
Sbjct: 199 QAVI 202


>gi|39935368|ref|NP_947644.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192290925|ref|YP_001991530.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|39649220|emb|CAE27740.1| possible two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
 gi|192284674|gb|ACF01055.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 248

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K          ELT  ++E L +++ GK++ +IA    +S  T+ + +A I++K     R
Sbjct: 169 KPPVADHNVFSELTPSQLELLPYLASGKSNRQIAKERDMSEFTIKSQVAGIIQKLNVANR 228

Query: 234 SGAIAYAVRN 243
           + A   A+RN
Sbjct: 229 TQAALLAMRN 238


>gi|330837581|ref|YP_004412222.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
 gi|329749484|gb|AEC02840.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
          Length = 528

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + L+ RE +   +I EGK++ EIA  L IS NTV  + + +  KT    RS  
Sbjct: 448 YNLSPREQQVAKFIMEGKSNSEIAKELFISANTVKAHTSHVYEKTGATHRSEL 500


>gi|325524820|gb|EGD02782.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. TJI49]
          Length = 210

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 15/161 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           + P  LV  + + EK  +    +        PV         P              V  
Sbjct: 48  NLPACLVLDVRMPEKSGFDVQAELNARGATLPVIFVSGHGDIP------------MSVRA 95

Query: 140 IRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           ++ G +    K     +  +R+     LA  +  + + +     +   LT RE E L  +
Sbjct: 96  LQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHAVDRRHRELRQRLDALTAREKEVLRGV 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK S +IA  L IS  TV+ + ASI  K    + +  + 
Sbjct: 156 VDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAALVR 196


>gi|320532007|ref|ZP_08032900.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135771|gb|EFW27826.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 203

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 2/112 (1%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L+  +    +G ++       +  D + ++               V  G +  LT RE E
Sbjct: 92  LSRSMEAGAVGFIVKDTPPEAL-ADAIRKVHAGLRVIDPELAQESVLLGPN-PLTDREKE 149

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L   + G  + EIA  L +   TV NY++S + KT  + R+ A   A  N 
Sbjct: 150 VLLAAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201


>gi|242278505|ref|YP_002990634.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242121399|gb|ACS79095.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           salexigens DSM 2638]
          Length = 218

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 4/156 (2%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL   +    +       +  T+      H  P++I            L    ++  + 
Sbjct: 56  MDLSMPIKSGVQAIQELSGEGKTKFLALTAHVEPDHIYSALDAGASGYVLKTSSSKELVM 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            +    +G++ L   +         Q +   S D        LT RE E L  +  G  +
Sbjct: 116 AIETVMQGKVYLAPDISAEVAKGFLQRDRSNSCDSLES----LTEREREVLKQVLAGYKN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EIA +L IS  TV  + ++ M+K   ++++   AY
Sbjct: 172 REIADLLVISVKTVEKHRSNFMKKLGLRSKAELKAY 207


>gi|239941310|ref|ZP_04693247.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987773|ref|ZP_04708437.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291444750|ref|ZP_06584140.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291347697|gb|EFE74601.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 237

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 8/166 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL------FCPVFHTLPENITPPAGMDNR 129
            +V +  P   V  + +   +      +    L          F      +         
Sbjct: 51  ELVRAHRPHVAVLDVRMPRTNGIDAAAEIRRTLPDTGVVMLTTFGEDDYILRALGAGAAG 110

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELT 187
           +   + +   +  G+  +      +       +   L ++    + +  D    +   LT
Sbjct: 111 FLIKSGEPEELLAGVRAVADGAAYLSPKVAARVVAHLASSGAGALAERRDAARERVAGLT 170

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            RE E L  +  G ++ +IA  L +   TV  +++S++ +     R
Sbjct: 171 PREREVLAHLGGGLSNGQIARRLHLVEGTVKAHVSSVLARLGVDNR 216


>gi|171915529|ref|ZP_02930999.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 234

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP------A 124
           E  L  + +S+ P  +V  + L        +     ++    F  L  +  P        
Sbjct: 55  ESALRELPASE-PDVVVVDLELPLMSGAELISVLSRKMISAAFVVLTVHDDPAKVFAALR 113

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         I  G+      G  + ++       +A      F+          
Sbjct: 114 AGAHGYLLKGSKPEDIVGGIRSASEGGAPLSQE-------IARLLIQSFQEPPKTEKPPI 166

Query: 185 E-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  +++G    E+A  L +S  TV +Y+  + +K   ++R+ A+   +++
Sbjct: 167 PGLTPRETQILERLAQGMVPKEVAFELSLSYETVRDYLKGVYQKLHVRSRTEAVIKFLQH 226

Query: 244 N 244
           N
Sbjct: 227 N 227


>gi|168699466|ref|ZP_02731743.1| two-component response regulator [Gemmata obscuriglobus UQM 2246]
          Length = 220

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +  +L+ RE E L  + +G T  EIA  L +S  TV  Y A +  KT  KTR+  +
Sbjct: 139 PPPAERSQLSRRETEVLELLVKGLTHQEIADQLFLSVKTVETYRARLREKTGLKTRADYV 198

Query: 238 AYAVRNNIV 246
            Y +   ++
Sbjct: 199 RYGLEAGLL 207


>gi|148245043|ref|YP_001219737.1| two-component system, nitrate/nitrite response regulator
           [Candidatus Vesicomyosocius okutanii HA]
 gi|146326870|dbj|BAF62013.1| two-component system, nitrate/nitrite response regulator
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 209

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     D   +   L  +     ++ +D  +   +LA    +     +  +G    LT 
Sbjct: 97  GYLLKDMDPDELVDALDEVIKGSIVVAQDMRY---ILAKALRDELTDNEPSFG---SLTS 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E    +S G ++  IA  LGIS  TV  ++ SI++K +  +R        +  
Sbjct: 151 REKEVACQVSSGYSNKVIARELGISDGTVKLHVKSILKKLSLSSRVEVAVMVTQKG 206


>gi|170728440|ref|YP_001762466.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC
           51908]
 gi|169813787|gb|ACA88371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Shewanella woodyi ATCC 51908]
          Length = 797

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L L++     I +DR+ EI  L  +                 L+ +E   +  +S+ + +
Sbjct: 696 LQLIWQLRSWISKDRVTEI--LNRHNRTRLILEPKKEEGSRLLSIKESAIMALVSQQRRN 753

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            EIA+ L IS  TV  ++ ++ RK   K+R  A+A
Sbjct: 754 KEIAIELDISEQTVKFHLKNVYRKLGVKSRKLAVA 788


>gi|333023482|ref|ZP_08451546.1| putative two-component response regulator [Streptomyces sp. Tu6071]
 gi|332743334|gb|EGJ73775.1| putative two-component response regulator [Streptomyces sp. Tu6071]
          Length = 227

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    +++G+T+ EI   LG+S ++V  Y+  +  K   + R    A+A    +
Sbjct: 160 LSAREQEITEHVAQGRTNQEIGTALGLSLSSVKTYLDRVRTKLGLRNRVEIAAWAWERGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|163815847|ref|ZP_02207217.1| hypothetical protein COPEUT_02026 [Coprococcus eutactus ATCC 27759]
 gi|158448657|gb|EDP25652.1| hypothetical protein COPEUT_02026 [Coprococcus eutactus ATCC 27759]
          Length = 813

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +L+      L   +EG +  +IA  L +S   V  ++  + RK     ++GA+  A  
Sbjct: 750 DVQLSETATAILKLQAEGLSRQKIADRLSMSEANVKYHLNQVYRKLGVTDKAGAVREASN 809

Query: 243 NNIV 246
             ++
Sbjct: 810 RGLI 813


>gi|119476963|ref|ZP_01617244.1| Two Component Transcriptional Regulator, LuxR family protein
           [marine gamma proteobacterium HTCC2143]
 gi|119449770|gb|EAW31007.1| Two Component Transcriptional Regulator, LuxR family protein
           [marine gamma proteobacterium HTCC2143]
          Length = 222

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+++ L  +++G ++  IA    +S NTV  ++++I++      R+     A +  I
Sbjct: 155 LTDRQLDILRLVAKGHSNKGIARHSNLSENTVKVHVSAILKALGLSNRTQIGLLAQKIGI 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|92117422|ref|YP_577151.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91800316|gb|ABE62691.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 199

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +        L+ RE E L  ++EG  +  IA  LGIS +TV  ++A+++ K    
Sbjct: 114 PEETAASLPIHLSQREAEVLALLAEGAPNKVIARRLGISVHTVKFHVAALLVKLGAA 170


>gi|269794456|ref|YP_003313911.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269096641|gb|ACZ21077.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 224

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT  EV  +  I EG ++ EIA  L I+  TV N+I S++ K   + R+   A
Sbjct: 148 HDDPTEDLTPSEVRVVDLIGEGLSNREIAERLSIAEKTVKNHITSLLAKMGLQRRTQVAA 207

Query: 239 Y-AVRNN 244
           + A R +
Sbjct: 208 WVAARKH 214


>gi|169260111|gb|ACA51941.1| BovR [Streptococcus equinus]
          Length = 198

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            + + S +V +    ELT RE E L ++ EG    EIA  L IS  T+ N+I +I+ K  
Sbjct: 123 GHNYHSKEVEF--HDELTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLE 180

Query: 230 TKTRSGAIAYAVRNNIV 246
             +   AI  A +   +
Sbjct: 181 VDSTIRAIIKARKMGYI 197


>gi|220921119|ref|YP_002496420.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219945725|gb|ACL56117.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 245

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 85/234 (36%), Gaps = 24/234 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  +   V ++ + ++  R + V+ L            +  T S    +  L +   AS 
Sbjct: 20  MVQQTAPVALIADDDEFFRLAMVAILSRSLGF----GEVVETGSLDAALDQLAQR--ASG 73

Query: 61  FLLVRWDLFQ--EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
             L  +DL     +   S+ +    F  V+   +S   + + +L             L  
Sbjct: 74  ITLALFDLAMPGMEGPGSLSAVRECFPWVKVAVVSGSSERHKIL-----------AALEV 122

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +            LT  V  I  G + + P    +L  R       A+  A       +
Sbjct: 123 GVHGYVPKGLGSSELTRAVGMILEGQIYVPPS-LAVLDGRSRSTARPASEAAE----GGL 177

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             G+  ELT R+ + L  + EGK++ EIA  L +   TV  ++A+++R    + 
Sbjct: 178 RGGRSVELTPRQRDVLALLVEGKSNKEIARQLQLGEGTVKVHMAALLRSLGVQN 231


>gi|327334996|gb|EGE76707.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1]
          Length = 179

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R  
Sbjct: 118 PLSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 177


>gi|297537907|ref|YP_003673676.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297257254|gb|ADI29099.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 213

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 4/121 (3%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA-YQANMFKSY 176
           E+I         YC      A ++    ++   G  + +D L  +   +     N  +  
Sbjct: 87  ESIHALKLGAMGYCHAHIAPAVLKEIKAVISHGGLWVGQDILQALIETSTKLVTNRPEQV 146

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D   GK   LT RE E     ++G ++ EIA IL I+  TV  ++AS   +   K R   
Sbjct: 147 DTLLGK---LTKREKEVALEAAKGSSNKEIARILSITERTVKAHLASTFERLRAKDRLQL 203

Query: 237 I 237
            
Sbjct: 204 A 204


>gi|139439378|ref|ZP_01772819.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC
           25986]
 gi|133775157|gb|EBA38977.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC
           25986]
          Length = 209

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 11/167 (6%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSL 133
              P   +  + +  +D      +          +F   F      ++        Y   
Sbjct: 44  EHAPDIALLDIQMPGRDGLSAAREILERDPSARVVFLTTFSDDEYIVSALKLGARGYLIK 103

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           T DVA I   L  +    RI+    + +I         +             LT RE E 
Sbjct: 104 T-DVAAIPPALAQVMDGKRILEGKAIEDIDF---DGTGVEAGTPRRPAAFASLTDREFEV 159

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
              I+ G  + EIA    +   TV N+I+SI+ K   + R+  AIAY
Sbjct: 160 AELIARGLDNKEIAATAYMGEGTVRNHISSILAKMGLRNRTQIAIAY 206


>gi|124003337|ref|ZP_01688187.1| transcriptional regulator, LuxR family [Microscilla marina ATCC
           23134]
 gi|123991435|gb|EAY30866.1| transcriptional regulator, LuxR family [Microscilla marina ATCC
           23134]
          Length = 219

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A   + Y       + +   +  ++       +       +      ++ +S     
Sbjct: 99  EIIAAGASGYILKNRGASELVNAIRTIYAGEEYFSK------AVTDTLIKSIQESKKAKP 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE E L  I +G T+ EI+  L I+  TV  +  +++ K   K     I Y 
Sbjct: 153 NPQVKLTKREKEVLALIGKGMTTKEISKQLFIADTTVETHRRNLIDKLEVKNSKELILYV 212

Query: 241 VRNN 244
            +N 
Sbjct: 213 AKNK 216


>gi|322433940|ref|YP_004216152.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161667|gb|ADW67372.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 190

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 23/129 (17%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           L    +     D     L   V R+  GL ++ P                         +
Sbjct: 83  LDAGASGYLLKDRPASELADAVRRVHRGLRVVDPAL-----------------------A 119

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +    +   LT RE + L    EG++S EIA  L +S  TV NY++  + K     R  
Sbjct: 120 TEAWSAEADPLTDRERQILQRAGEGRSSGEIAGELRLSEGTVRNYLSEAISKLGAANRVD 179

Query: 236 AIAYAVRNN 244
           A   A    
Sbjct: 180 AARIARAKG 188


>gi|294815293|ref|ZP_06773936.1| Transcriptional regulator, LuxR family [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443648|ref|ZP_08218382.1| transcriptional regulator, LuxR family protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|294327892|gb|EFG09535.1| Transcriptional regulator, LuxR family [Streptomyces clavuligerus
           ATCC 27064]
          Length = 251

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE + L  IS+G T  +IA  LGISR+TV+ Y+  I  K     ++     A++
Sbjct: 174 LSLRESQVLGQISQGLTHGQIATRLGISRHTVDTYVKRIRTKFGVGNKAELTRVALQ 230


>gi|71733679|ref|YP_275938.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257487038|ref|ZP_05641079.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289625994|ref|ZP_06458948.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289651490|ref|ZP_06482833.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298488235|ref|ZP_07006270.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71554232|gb|AAZ33443.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298157243|gb|EFH98328.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320323080|gb|EFW79169.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320329648|gb|EFW85637.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330868582|gb|EGH03291.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330878032|gb|EGH12181.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|331009320|gb|EGH89376.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 215

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 152 LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAA 203


>gi|34495760|ref|NP_899975.1| two-component response regulator [Chromobacterium violaceum ATCC
           12472]
 gi|34101616|gb|AAQ57984.1| probable two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 199

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           + L   + A +  S    W +    + RE E +  + +G+++ EIA  L I+  TV  ++
Sbjct: 118 LRLCQRFGALVPPSEQAGWRERV--SSREAEVIAILKQGRSNKEIARELDITERTVKAHL 175

Query: 222 ASIMRKTATKTRSGA 236
            +I +K   + R   
Sbjct: 176 TAIFQKFGVEDRLQL 190


>gi|21232778|ref|NP_638695.1| LuxR/UhpA family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767149|ref|YP_241911.1| LuxR/UhpA family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|21114598|gb|AAM42619.1| transcriptional regulator luxR/uhpA family [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66572481|gb|AAY47891.1| transcriptional regulator luxR/uhpA family [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 212

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 36/69 (52%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   ++      K  +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K  
Sbjct: 133 AERSEADAQLAAKLAQLTPQQFRVLLCLADGLLNKQIAHELGLAENTVKVHVTAILKKLD 192

Query: 230 TKTRSGAIA 238
             +R+ A  
Sbjct: 193 CYSRTQAAV 201


>gi|29654272|ref|NP_819964.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA
           493]
 gi|154706559|ref|YP_001424463.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|161830115|ref|YP_001596757.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331]
 gi|165923366|ref|ZP_02219703.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
 gi|29541539|gb|AAO90478.1| response regulator [Coxiella burnetii RSA 493]
 gi|154355845|gb|ABS77307.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|161761982|gb|ABX77624.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331]
 gi|165916692|gb|EDR35296.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
          Length = 217

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 107 ELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           E+   V   +   + P   ++     + + + D A +   +  +    R I       + 
Sbjct: 75  EIKILVVTAMEGELLPMRLLEVGVRGFITKSSDSAELERAIRAVHSGQRYIGSAIASRLA 134

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           L     A              +L+ R++E L  +++G  ++ IA  L I+  TVN++   
Sbjct: 135 LSKTTAAK---------SPFDQLSNRQMEVLLLLAKGMNAESIAKQLHITAKTVNSHRYR 185

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +  K   K     I  AV+  ++
Sbjct: 186 MFEKLGVKNDVELIKLAVQYGLI 208


>gi|304382776|ref|ZP_07365260.1| transcriptional regulator [Prevotella marshii DSM 16973]
 gi|304336095|gb|EFM02341.1| transcriptional regulator [Prevotella marshii DSM 16973]
          Length = 318

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ 
Sbjct: 248 NESLSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIV 307

Query: 243 NNIV 246
           NN+V
Sbjct: 308 NNLV 311


>gi|46360105|gb|AAS88874.1| putative serine-threonine protein kinase [Rhodococcus sp. T104]
          Length = 1092

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%)

Query: 163  GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
              +A        +           T RE E    ++EG T+ EIA  L IS  T   +I 
Sbjct: 1007 SAVAYALGEQSPASYTPTAGQAGPTKREREVAELVAEGLTNREIASRLTISVRTAQGHIE 1066

Query: 223  SIMRKTATKTRSGAIAYAVRNN 244
             ++ K    +R+   A+ V + 
Sbjct: 1067 HLLAKLGFTSRAQIAAWVVESR 1088


>gi|325695633|gb|EGD37533.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 199

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLFLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLDAENRTEAVRIGQEKG 197


>gi|301054683|ref|YP_003792894.1| salavaricin two-component response regulator [Bacillus anthracis
           CI]
 gi|300376852|gb|ADK05756.1| salavaricin two-component response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 191

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  +  K    +   A+   ++  
Sbjct: 126 ELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLG 185

Query: 245 IV 246
            +
Sbjct: 186 YI 187


>gi|295099967|emb|CBK89056.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium cylindroides T2-87]
          Length = 217

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 66/175 (37%), Gaps = 10/175 (5%)

Query: 78  VSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YC 131
           + ++ P  ++  + + + D       + Q+  E+   +  T  ++      + N    Y 
Sbjct: 43  IEANKPDVVLMDVRMPQMDGVECTRIIKQKYPEISVIILTTFDDDEYIYDAIKNGASGYL 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGR 189
                   +   +  +   G I   +      L + +         + W KD   +L+  
Sbjct: 103 LKGCSFDELSKSIRSVLNGGAIFNPN--VAKKLTSFFSQMANNPEHLSWDKDGLPDLSEN 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E + +  I  G ++ EIA +L  S  T+ NY++ I+ K   + R+    + ++  
Sbjct: 161 EWKIIEQIGHGLSNKEIASLLQFSEGTIRNYLSVILDKLGLRDRTQLAIWYLKKG 215


>gi|189468008|ref|ZP_03016793.1| hypothetical protein BACINT_04402 [Bacteroides intestinalis DSM
           17393]
 gi|189436272|gb|EDV05257.1| hypothetical protein BACINT_04402 [Bacteroides intestinalis DSM
           17393]
          Length = 204

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +T + +G T+  IA  L +S +TV  +  +I RK    + +G   YA+ N +
Sbjct: 135 LSQREKEIITCVVKGMTNKAIADQLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|197120747|ref|YP_002132698.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170596|gb|ACG71569.1| transcriptional regulator, LuxR family [Anaeromyxobacter sp. K]
          Length = 341

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 7/147 (4%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI---RIGLML 146
           ++ +  +    V +R  E+        P       G +          AR     +    
Sbjct: 191 LSGAGAEAALRVGRRCHEVLHGRPSPCPGCPALRGGGEAWPRVEVRRAARTGGFEVATAT 250

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
             P   +++  R  +   LAA    + ++      + FEL+ RE E L  +  G+ + +I
Sbjct: 251 ALPGDEVLVAVRRVDDAALAA----VREARTAELVRRFELSPREEEVLRLLLIGRQAADI 306

Query: 207 AVILGISRNTVNNYIASIMRKTATKTR 233
              LGI+  T   +  +++RK    +R
Sbjct: 307 GTALGITPRTAKFHQTNVLRKLGASSR 333


>gi|52142347|ref|YP_084482.1| response regulator of salavaricin regulon [Bacillus cereus E33L]
 gi|51975816|gb|AAU17366.1| response regulator of salavaricin regulon [Bacillus cereus E33L]
          Length = 192

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  +  K    +   A+   ++  
Sbjct: 126 ELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLG 185

Query: 245 IV 246
            +
Sbjct: 186 YI 187


>gi|331005230|ref|ZP_08328623.1| Transcriptional regulator, LuxR family [gamma proteobacterium
           IMCC1989]
 gi|330420973|gb|EGG95246.1| Transcriptional regulator, LuxR family [gamma proteobacterium
           IMCC1989]
          Length = 219

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    + +     W    +      + +       +   LT ++   L ++ EG  + +I
Sbjct: 112 LHKAIQAVAEGEQWIPAFMENQLTEINQDEKSLAARISTLTPQQYRVLCYVREGWLNKQI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +GI+  TV  +I +I RK     R+ A+ 
Sbjct: 172 GFEIGITEATVKAHITAIFRKLGVTNRTQAVI 203


>gi|254292885|ref|YP_003058908.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254041416|gb|ACT58211.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC
           49814]
          Length = 249

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE +CL +++ G   D I   L I+  TVN +I +   K    T + A+A A+R N
Sbjct: 188 PLTDRERDCLAFLARGLRPDRIGDELSIATVTVNMHIRNARYKLKATTNAHAVAKAIRLN 247

Query: 245 IV 246
            +
Sbjct: 248 FI 249


>gi|209547859|ref|YP_002279776.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533615|gb|ACI53550.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 260

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E T RE + L  +  G ++  IA  L +S +TV  ++  IMRK   + R+  +A  ++ 
Sbjct: 192 EFTPREADVLAELQSGCSNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVARLIQR 250


>gi|149914863|ref|ZP_01903392.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b]
 gi|149811051|gb|EDM70888.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b]
          Length = 252

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT R+ E L W+ +GKT  +IAV++G++  TV  ++         +T + A+  A 
Sbjct: 187 LTRRQREVLAWVGDGKTIQDIAVLMGLTPATVEKHLRLARDSLNVETTAQAVLKAA 242


>gi|28871170|ref|NP_793789.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213969159|ref|ZP_03397298.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301383947|ref|ZP_07232365.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302064168|ref|ZP_07255709.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134747|ref|ZP_07260737.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28854420|gb|AAO57484.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213926157|gb|EEB59713.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|331016409|gb|EGH96465.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 215

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 152 LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAA 203


>gi|329935673|ref|ZP_08285479.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329304851|gb|EGG48723.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 220

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLT 195
             R+   ++        +  D L   G L      + +    H G     L  REV+ L 
Sbjct: 113 AHRLAQAVLSAARGEGDLPADLL---GRLIEQVGTLHRGAAGHSGAPAVGLLPREVDVLR 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G  + EIA  L  S  T+ N +  +  +   + R+ A+AYA+R   +
Sbjct: 170 LVADGLDTSEIAGKLSYSERTIKNVMHGLTTRLHLRNRAHAVAYALREGYI 220


>gi|329947902|ref|ZP_08294834.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523526|gb|EGF50624.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 203

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 16/174 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +     P  ++  + +   D       +L+R       +  T          + +    
Sbjct: 41  PVALEHRPDVVLMDVDMPGTDGLSATSKLLERLPTTRVLIVTTFGRPGFLRRAVQSGA-- 98

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                      ++   P   +    R    GL          +  + +G D  LT RE E
Sbjct: 99  --------HGFVVKDAPATDLAESVRRVHAGL--RVVDPALAADSLVFG-DSPLTARETE 147

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L   ++G T  E+A  + +S  T  N+++  M KT   TR+ A+  A +   +
Sbjct: 148 VLQAAADGATVAEVARRVHLSEGTTRNHLSQAMAKTDAPTRAAAVHIAAQKGWI 201


>gi|307331390|ref|ZP_07610509.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306882949|gb|EFN14016.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 201

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L + ++G+ S +IA  L +S  TV NY+ S + K   + R  AI  A    
Sbjct: 140 PLTPRELEVLRFAAKGEESAQIAAKLFLSVGTVRNYLTSAVTKLDARNRVDAIRIAREAG 199


>gi|298247364|ref|ZP_06971169.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297550023|gb|EFH83889.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1035

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 61/189 (32%), Gaps = 7/189 (3%)

Query: 58   ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
             SH+L                 S     +V      +  +  NV  R   L  P      
Sbjct: 854  FSHYL-------DRPGDPPSALSFLALSVVALFHAGQSTRAQNVATRLLTLTEPEGMLRV 906

Query: 118  ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                 P         L          +    P    IL     E    A  QA    ++ 
Sbjct: 907  YLDAGPLMKQALTMLLEVPHHDESCTVASFRPYVLRILAASEQEGHESAHAQAAHLSNHR 966

Query: 178  VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                    L+ +E + L  +  G+T  E+A  L +S NT+ + ++SI RK     R+ A+
Sbjct: 967  HPQALLSPLSRQEQQVLRLLMVGQTYAEMAQTLVVSLNTIKSQVSSIYRKLGVSRRTEAM 1026

Query: 238  AYAVRNNIV 246
            A   R N++
Sbjct: 1027 AVTTRLNLL 1035


>gi|258510658|ref|YP_003184092.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477384|gb|ACV57703.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 200

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                D  L+ RE++ L     G T+ ++A  L +S  TV NY++  + K    TR  AI
Sbjct: 132 AAMETDNPLSAREIDVLRLAKRGLTTRQMAKELFLSEGTVRNYLSGALAKLGCATRQEAI 191

Query: 238 AYA 240
             A
Sbjct: 192 RKA 194


>gi|168484073|ref|ZP_02709025.1| DNA-binding response regulator [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042589|gb|EDT50635.1| DNA-binding response regulator [Streptococcus pneumoniae
           CDC1873-00]
 gi|332199429|gb|EGJ13506.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 199

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       LT +E+  L  I +G ++ EI   L +S  TV NY+ +
Sbjct: 117 VLEGRKEYSPELMEVVMTHPNPLTEQEIAVLKGIVQGFSNQEIVDKLYLSNGTVRNYVTN 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K     R+ A   A  + 
Sbjct: 177 ILSKLDAGNRTEAANIAKESG 197


>gi|66044632|ref|YP_234473.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|302187186|ref|ZP_07263859.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|63255339|gb|AAY36435.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
 gi|330945540|gb|EGH47068.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330968918|gb|EGH68984.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 215

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 152 LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAA 203


>gi|150018684|ref|YP_001310938.1| two component LuxR family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905149|gb|ABR35982.1| two component transcriptional regulator, LuxR family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 219

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   +          D R   +   +     G +LL P    +    +     ++  + N
Sbjct: 90  VLQGIRNGADGYILKDARSHDIIKSIKAAYNGDILLDP---AVTTKLIRAFNSISIDKQN 146

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  +    K   LT RE++    +++G ++ +I   L ++  TV NY+ +I  K    
Sbjct: 147 S-RIINKQKKKLELLTQREMDVAKLVAQGNSNKDICHTLFLTEGTVKNYLTNIFEKLELS 205

Query: 232 TRSGAIAY 239
           +R+    +
Sbjct: 206 SRTELALF 213


>gi|299768423|ref|YP_003730449.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter sp.
           DR1]
 gi|298698511|gb|ADI89076.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter sp.
           DR1]
          Length = 216

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 152 LTPQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|291009365|ref|ZP_06567338.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 214

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE++ L  +SEG     IA  L  S  TV N + +   +     R+ A++YA+R+ +
Sbjct: 154 ITNREIDVLRMVSEGFDLKHIAQELHFSERTVKNVLYNFTNRFNLHNRAHAVSYAIRSGL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|312115840|ref|YP_004013436.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220969|gb|ADP72337.1| two component transcriptional regulator, LuxR family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 226

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + + S +  V RIR  +  +   G     +   E G                  +
Sbjct: 103 ANLGASGFISKSLPVDRIRQAVKTILDGGIWFTDEMQGEGG---------PDELGEMAAR 153

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              LT ++V  L+ + +G  + +IA  L +S  TV  ++++I++K    +R+ A+ 
Sbjct: 154 LATLTPQQVRVLSMLGKGLLNKQIAYELSVSEATVKAHVSAILQKLGVDSRTQAVI 209


>gi|225568587|ref|ZP_03777612.1| hypothetical protein CLOHYLEM_04664 [Clostridium hylemonae DSM
           15053]
 gi|225162603|gb|EEG75222.1| hypothetical protein CLOHYLEM_04664 [Clostridium hylemonae DSM
           15053]
          Length = 206

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 32/56 (57%)

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   +T +++G ++ EIA  + +S  TV NY+++I+ K   + R+    +  ++
Sbjct: 150 EKEYTLITLVADGFSNKEIAEKMFLSEGTVRNYLSNILDKLDLRDRTQLAVFYYQH 205


>gi|116249582|ref|YP_765420.1| hydrolase/GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115254230|emb|CAK03845.1| putative hydrolase/GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 333

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 31/70 (44%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S       +  LT  E   L  ++EG  +  IA  LG S  TV N ++ I  K    +R
Sbjct: 264 RSVRPRAVSEAGLTPAEAALLDLVAEGLDNRAIAERLGKSAKTVRNQLSVIFSKLGVHSR 323

Query: 234 SGAIAYAVRN 243
           S AI  A+  
Sbjct: 324 SQAIVVALSR 333


>gi|21225971|ref|NP_631750.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|12311704|emb|CAC22720.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 226

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 8/179 (4%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL------FCPVFHTLPENITPPAGMDNR 129
            +V    P   V  + +   +      +  T +          F      +    G    
Sbjct: 41  ELVRRHRPAVAVLDIRMPGLNGIDAAAEIRTAVPGTGVIMLTTFGEDDYILQALGGGAAG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +   + +   +  G+  +      +           L A     +         +   LT
Sbjct: 101 FLIKSGEPEELLTGVRAVAGGAAYLSPRVAARVVAHLAATGAGTLAGRRSAARDRVAALT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G ++ +IA  L +   TV  +++S++ +     R+ A   A    I+
Sbjct: 161 AREREVLALLGAGLSNGQIARRLHVVEGTVKAHVSSLLARLGVDNRAAAAVVAHEAGII 219


>gi|269128355|ref|YP_003301725.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268313313|gb|ACY99687.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 872

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ R+ E L  ++ G ++ EIA  L ++  TV +++++I+RK    +R+
Sbjct: 794 PRPATRAHPAGLSRRQAEVLELVAAGMSNAEIAKTLFLTPKTVEHHVSAILRKLRVDSRA 853

Query: 235 GAIAYAVRNNIV 246
            A   A    +V
Sbjct: 854 AAAEAARSLGLV 865


>gi|170749447|ref|YP_001755707.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655969|gb|ACB25024.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 222

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 6/169 (3%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +   D     +  + L+E+        R   +     H     + P      R   L  
Sbjct: 52  DVAVVDVSMPGLNGLELTERVAGSCPRTR---VLVLTVHEDAAYVQPLLKAGARGYLLKR 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A   +  +     G I L   +    +  A+ A   +  D     +  L+ RE + L 
Sbjct: 109 SAAEDLLRAVRAVAAGGIYLDPSVASHAM--AHPATPTQGGDTEPSAE-ALSPRETDVLR 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            I++G ++ EIA    +S  ++  Y A    K   +TR+  I YA  + 
Sbjct: 166 LIAQGFSNKEIARRFDLSVKSIETYKARAAEKLGLRTRAEIIRYAAAHG 214


>gi|229185386|ref|ZP_04312569.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228598119|gb|EEK55756.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 186

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  +  K    +   A+   ++  
Sbjct: 121 ELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLG 180

Query: 245 IV 246
            +
Sbjct: 181 YI 182


>gi|167949597|ref|ZP_02536671.1| response regulator [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 181

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 13/164 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           V    +   +    +L+   +L       L     P    +     Y +       +   
Sbjct: 20  VNMPGIGGIEATRRLLRIAPDLKVVALTMLDNEPFPARLNEVGAMGYLTKGCPADEMIQA 79

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +F     +  D           + ++   +  H    F+ L+ RE + +  I EG+ 
Sbjct: 80  IRSVFRGQPFVSSD---------VARKHILTDWKRHSATPFQGLSSRETQVMLMILEGQR 130

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI+  L +S  TV+ Y   I  K   +        A R+ I+
Sbjct: 131 NQEISDGLSLSPKTVSTYRQRIYEKLDVRNDVELTRLAYRHGIL 174


>gi|148264664|ref|YP_001231370.1| response regulator receiver protein [Geobacter uraniireducens Rf4]
 gi|146398164|gb|ABQ26797.1| response regulator receiver protein [Geobacter uraniireducens Rf4]
          Length = 239

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 47/104 (45%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V  +  GL  +F     + R ++ E  L   ++    +          +LT REVE L  
Sbjct: 126 VETLLKGLTAVFGGEFWVSRQKMAETILENGFRLRRMQIPSHVHIYPHDLTQREVELLGL 185

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ G +++ IA  L IS +TV  ++  I +K    +R  A  +A
Sbjct: 186 LTLGSSNEVIADKLFISPHTVRTHLNHIFKKINVSSRLEASIWA 229


>gi|331001406|ref|ZP_08325026.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
 gi|329568288|gb|EGG50099.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
          Length = 220

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 152 RIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIA 207
           + I  +RL E     +     +     +V   ++    LTGRE++ +  I++G  + EIA
Sbjct: 102 KPINDERLLESVEAAVNEDWQSRSTLKNVKKNRELLLTLTGRELDIVRLITKGLNNKEIA 161

Query: 208 VILGISRNTVNNYIASIMRKTATKT 232
             LGI+  TV  + +SI RK   +T
Sbjct: 162 EELGIAEKTVKVHRSSIYRKLQVRT 186


>gi|300694330|ref|YP_003750303.1| two component response regulator transcription regulator protein
           [Ralstonia solanacearum PSI07]
 gi|299076367|emb|CBJ35679.1| putative two component response regulator transcription regulator
           protein [Ralstonia solanacearum PSI07]
          Length = 230

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++          D+    +  ++  +  G   + P     +  R  + G      A 
Sbjct: 101 VMRSIEAGAAGYLLKDSSAARILNEIRSLASGGSPISPIIARQILARFRQGG------AR 154

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              S          L+ RE E L  I++G T+ EIA ++ +S  TV  ++  I  K    
Sbjct: 155 GTTSEVSASESSPLLSAREKEVLDLITKGFTAQEIAKLMALSHFTVRTFVRRIYSKLKVT 214

Query: 232 TRSGAIAYAVRNNIV 246
           +++ AI  A    ++
Sbjct: 215 SKAEAIYEARTLGLL 229


>gi|297156465|gb|ADI06177.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 255

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 65/199 (32%), Gaps = 13/199 (6%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-------LF 109
           GAS  + +  +     ++ ++V    P  ++  + +   D      ++  +       + 
Sbjct: 60  GASSGIEIVGEASDGAEVAALVDRHSPDVVLMDIRMPTVDG-LTATEQLRQREPAPEVVV 118

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
              F+     +         +       A +   +  +     ++          L  + 
Sbjct: 119 LTTFNADEHVLRALRAGAAGFVLKDTPPADLVAAVRRVAAGEPVLSPTV---TQQLIEHV 175

Query: 170 ANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           A   +       +    +L  RE E    + EGK++ EI+  L +S  TV  +++ I+ K
Sbjct: 176 AGSGRDARQERARALLDQLNDREREVAVAVGEGKSNAEISAGLFMSVATVKTHVSRILTK 235

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R      A    ++
Sbjct: 236 LDLNNRVQIALLAHDAGLL 254


>gi|157374044|ref|YP_001472644.1| putative nitrate/nitrite DNA-binding response regulator [Shewanella
           sediminis HAW-EB3]
 gi|157316418|gb|ABV35516.1| putative nitrate/nitrite DNA-binding response regulator [Shewanella
           sediminis HAW-EB3]
          Length = 206

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 18/163 (11%)

Query: 89  CMALSEKDK-YYNVLQRPTELFC-PVFHTLPENITPPAGM----DNRYCSLTFDVARIRI 142
            + + + D  Y   L +  E+ C  V  ++ +N            + Y         +  
Sbjct: 54  DINMPQMDGMYLLELIKEQEMSCKVVMLSMHDNKEYIVAAMRHGADGYILKDVPGKELIE 113

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R    D +  +            S ++  GK   +T RE   L  IS G  
Sbjct: 114 AIKKVAAGKRYFSADVIDTL------------SQELASGKQVLVTQREQLVLRLISLGMN 161

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  + +S  TV  +  +I +K A    +G + YA+ + +
Sbjct: 162 NKRIAQEMNVSVRTVETHKRNIKQKLAIDCTAGLVRYAIDHGL 204


>gi|134099153|ref|YP_001104814.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911776|emb|CAM01889.1| transcriptional regulator, LuxR family [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 209

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE++ L  +SEG     IA  L  S  TV N + +   +     R+ A++YA+R+ +
Sbjct: 149 ITNREIDVLRMVSEGFDLKHIAQELHFSERTVKNVLYNFTNRFNLHNRAHAVSYAIRSGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|91215054|ref|ZP_01252026.1| two-component response regulator [Psychroflexus torquis ATCC
           700755]
 gi|91186659|gb|EAS73030.1| two-component response regulator [Psychroflexus torquis ATCC
           700755]
          Length = 210

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 18/203 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIV--SSDWPFDL---VRCMALSEKDKYYNVLQRP 105
           +L +Y  A   L         +    ++  S ++P  +   +  + +S  D    +L++ 
Sbjct: 18  SLKDYFNAQPHLECLLITASVEDFIKVIKLSKNYPEIILLDINLLGMSGIDGIPLILKKL 77

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCS---LTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            E+   +  T  +N +    +    CS       + +I   ++++   G  +        
Sbjct: 78  PEVSIIMLTTFEDNDSIYKALCAGACSYLSKKTPLKKILEAILVVHLGGSYMSP------ 131

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +A   AN F    +   K   LT R+ E +T I  GK+   IA+ L IS +TV  +I 
Sbjct: 132 -AIARKVANHFAQKQI---KSTVLTERQKEIVTGIVAGKSYKMIAIDLFISIDTVRTHIK 187

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           +I +     +++  I  +  N +
Sbjct: 188 NIYKTLEINSKAELIRKSYDNEL 210


>gi|325527580|gb|EGD04892.1| two component transcriptional regulator luxr family protein
           [Burkholderia sp. TJI49]
          Length = 257

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             F            LT R+ + L+ +  G  +  IA  L ++  TV+N+I +++R    
Sbjct: 166 RCFPDPGSECDPLQRLTNRQRDVLSLLCVGYPTKVIASTLRLAEGTVDNHIGNVLRVLNA 225

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ AI  AV    +
Sbjct: 226 HNRAHAIYKAVALGYL 241


>gi|325277013|ref|ZP_08142678.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|324097849|gb|EGB96030.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 216

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAA 204


>gi|315647520|ref|ZP_07900622.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315276959|gb|EFU40300.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 216

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 24/193 (12%)

Query: 63  LVRWDLFQ------EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           +   D  Q      EQ    +V  D    ++  +A + + K  +      E    +  T 
Sbjct: 32  VATTDNGQTACELVEQLRPQLVLMDIEMPVMNGIAATRQIKQSHP-----ETIVLILTTF 86

Query: 117 PENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANM 172
            E       + N    Y    F   +I   +        ++      ++   L    A  
Sbjct: 87  TEEDFIIECLANGASGYLLKDFSSNKIITSIQEAVRGEMMLPSKVAAKLAARLRTTGAPQ 146

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F +      + + LT RE++    ++E K + EIA +L I+  TV NYI+ I  K     
Sbjct: 147 FPA------QHYNLTPRELQIAKLMTEYKNNREIADMLYITEGTVRNYISVIYEKIGMND 200

Query: 233 RSGAI---AYAVR 242
           R+ AI    +A+R
Sbjct: 201 RTKAIPLLKHALR 213


>gi|306842522|ref|ZP_07475173.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2]
 gi|306287378|gb|EFM58858.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2]
          Length = 245

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|288555019|ref|YP_003426954.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288546179|gb|ADC50062.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 199

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+ +     LT RE + +  I+EGK+++EIA  L ++  TV NYI+ I+ K     R  A
Sbjct: 129 DLAYDNKNPLTNREKQVMELIAEGKSTNEIASELYLTNGTVRNYISVILDKLDVGNRIEA 188

Query: 237 IAY 239
           I+ 
Sbjct: 189 ISR 191


>gi|297560053|ref|YP_003679027.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844501|gb|ADH66521.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 200

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT REV+ L   SEG +  +IA  L ++  TV NY+++ M+KT T+TR  A  YA  
Sbjct: 137 DCPLTDREVDVLRATSEGYSVADIAAQLHLAEGTVRNYLSNAMQKTQTRTRHEAARYARE 196

Query: 243 N 243
           +
Sbjct: 197 H 197


>gi|310659584|ref|YP_003937305.1| hypothetical protein CLOST_2283 [Clostridium sticklandii DSM 519]
 gi|308826362|emb|CBH22400.1| protein of unknown function [Clostridium sticklandii]
          Length = 568

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT RE E     S+G  + EI+  L IS NTV  ++ SI +K     R
Sbjct: 510 DLTAREKEVAILASKGLRNTEISEKLMISENTVKYHLRSIFQKLDVDRR 558


>gi|317129068|ref|YP_004095350.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474016|gb|ADU30619.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 231

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            T +E E L  I +G  + EIA  L  + +TV+  I+SI++K     R+ A+  A+RN 
Sbjct: 167 FTKKEQEILQLILDGCNNGEIADKLFYANSTVSTNISSILKKMEANDRTEAMVKAIRNG 225


>gi|282859563|ref|ZP_06268668.1| hemerythrin HHE cation binding domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282587791|gb|EFB92991.1| hemerythrin HHE cation binding domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 318

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 82/214 (38%), Gaps = 11/214 (5%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
             +D T +    +  L +      F++ +   ++E+ +   V +           +    
Sbjct: 105 AAVDTTENLAKLIIKLFDEYA---FVISKHMSYEEKTVFPYVDALLNNQATGEYDIETYS 161

Query: 97  KYYNVLQR-PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           K+++  ++   E+   +   LP +       +N+  +  F++      L         I 
Sbjct: 162 KHHDQAEQQLGEVKTIILKYLPSDAQH----NNQLTAALFNIYNCEEWLKQHAEVEENIF 217

Query: 156 RDR---LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
                 L E        AN+    +    +   L+ RE + +  + +G ++ EIA  L I
Sbjct: 218 IPAIRCLEENIKQKDVSANISCMINKRPDRGDTLSDREKDVIVALVQGMSNKEIAEHLCI 277

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S NTV  +  +I +K    + +G   YA+ NN+V
Sbjct: 278 STNTVITHRRNIAKKLKIHSPAGLTIYAIVNNLV 311


>gi|269980449|gb|ACZ56323.1| putative luxR-like virulence response regulator [Mycobacterium
           chubuense NBB4]
          Length = 280

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 21/167 (12%)

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-NRYCS------LTFDVARIRIGLMLL 147
            D          ++     H LP+   P A       C        T D  R    +  L
Sbjct: 120 TDGVAAATAECPDVVLLDLH-LPDMALPDAAAALRGACPGVKLVLFTGDSKRSVGQIAGL 178

Query: 148 FPKGRIILRD--------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                ++ +D         + E+     Y   +  S D        L+ RE + L  ++ 
Sbjct: 179 VGVDAVVHKDNACAVLITAITEVAAGRRYCDPVISSGD-----PLALSRREYQVLERLAM 233

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+++ EIA  L ++ NTV +Y+ S++     + R  A+  A +  ++
Sbjct: 234 GESNSEIAQQLRLAPNTVKSYVQSLLAHLDARNRLDAVVKAQQAGML 280


>gi|187919801|ref|YP_001888832.1| LuxR family ATP-dependent transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187718239|gb|ACD19462.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia phytofirmans PsJN]
          Length = 900

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L+ + +  ++  IA+ L I+  TV   + +I  K    +R  A+ +A +  +
Sbjct: 839 LTQRELEILSLVGQAMSNKRIALALDITIETVKWNLRNIFSKLGVSSRYDAMVWARKQEL 898

Query: 246 V 246
           +
Sbjct: 899 I 899


>gi|49478066|ref|YP_037282.1| salavaricin two-component response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329622|gb|AAT60268.1| salavaricin two-component response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 192

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  +  K    +   A+   ++  
Sbjct: 126 ELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLG 185

Query: 245 IV 246
            +
Sbjct: 186 YI 187


>gi|229162035|ref|ZP_04290009.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228621441|gb|EEK78293.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 186

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  +  K    +   A+   ++  
Sbjct: 121 ELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLG 180

Query: 245 IV 246
            +
Sbjct: 181 YI 182


>gi|229197293|ref|ZP_04324023.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228586170|gb|EEK44258.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 187

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  +  K    +   A+   ++  
Sbjct: 121 ELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLG 180

Query: 245 IV 246
            +
Sbjct: 181 YI 182


>gi|227505091|ref|ZP_03935140.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198294|gb|EEI78342.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 218

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 164 LLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +L  Y+A +    ++   +   L   T RE+E L  I+ G T+ EIA  L ++  TV  +
Sbjct: 133 VLEGYRAAIAGRAELSAAQRQGLALVTRRELEVLRLITSGATNREIAQELVLAETTVKTH 192

Query: 221 IASIMRKTATKTRSGAI 237
           ++S+M K   + R   +
Sbjct: 193 VSSLMSKLQARDRVALV 209


>gi|284989297|ref|YP_003407851.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284062542|gb|ADB73480.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 270

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 36/59 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ +  T ++EG +++EIA  L +S  TV +++ ++MR+   +TR+       R++
Sbjct: 208 LTERQRDVATLVAEGLSNEEIASRLFLSPATVKSHLTAVMRRLDIRTRTQLAILLTRDH 266


>gi|254476478|ref|ZP_05089864.1| autoinducer-binding transcriptional regulator, LuxR family
           [Ruegeria sp. R11]
 gi|214030721|gb|EEB71556.1| autoinducer-binding transcriptional regulator, LuxR family
           [Ruegeria sp. R11]
          Length = 252

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 22/192 (11%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY---- 130
           D ++ S+   + V     S       +L    E   P   TL ++     G+        
Sbjct: 53  DFVILSNHCSEYVEGFVNSGLYFDAPMLHWALENDGPGSWTLVQDQISNGGLSESAQKVL 112

Query: 131 -----------CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQANM 172
                       +++F+ +  R    +       + +D + +I         L    A++
Sbjct: 113 EFNAKHGVTAGYTVSFNSSSDRFKGAISLAACDGLNQDDVEDIWREHGRDITLMNNMAHL 172

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                 +   +  LT R+ E L W+ +GKT+ +IAV++G++  TV  ++       + +T
Sbjct: 173 KILTLPYQPPNRSLTRRQREALQWVGDGKTTQDIAVLMGLTTATVEKHLRLAREALSVET 232

Query: 233 RSGAIAYAVRNN 244
            + A+  A  +N
Sbjct: 233 TAHAVLKAALHN 244


>gi|254392649|ref|ZP_05007824.1| hypothetical protein SSCG_05260 [Streptomyces clavuligerus ATCC
           27064]
 gi|197706311|gb|EDY52123.1| hypothetical protein SSCG_05260 [Streptomyces clavuligerus ATCC
           27064]
          Length = 261

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE + L  IS+G T  +IA  LGISR+TV+ Y+  I  K     ++     A++
Sbjct: 184 LSLRESQVLGQISQGLTHGQIATRLGISRHTVDTYVKRIRTKFGVGNKAELTRVALQ 240


>gi|90420412|ref|ZP_01228319.1| two-component response regulator, possible glycerol metabolism
           activator [Aurantimonas manganoxydans SI85-9A1]
 gi|90335140|gb|EAS48893.1| two-component response regulator, possible glycerol metabolism
           activator [Aurantimonas manganoxydans SI85-9A1]
          Length = 227

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT ++   LT +  G  + +IA  LGIS  T+  ++++++ K    +R+ A+    R  +
Sbjct: 160 LTPQQTRVLTMLGRGLLNKQIAYELGISEATIKAHVSAVLLKLGVDSRTQAVIRLSRLGL 219


>gi|75674440|ref|YP_316861.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74419310|gb|ABA03509.1| two component transcriptional regulator, LuxR family [Nitrobacter
           winogradskyi Nb-255]
          Length = 216

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L+ ++ G ++ E    LGIS  TV  + A IM K   K  +  I       
Sbjct: 149 LTCREREVLSQVARGASNKEAGRRLGISPRTVEVHRARIMDKLGAKNTADLIRIVFSEG 207


>gi|148821582|ref|YP_001286336.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            F11]
 gi|148720109|gb|ABR04734.1| hypothetical transcriptional regulatory protein, luxR/uhpA-family
            [Mycobacterium tuberculosis F11]
          Length = 1085

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 1027 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 1084


>gi|332291348|ref|YP_004429957.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332169434|gb|AEE18689.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 209

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 68/199 (34%), Gaps = 27/199 (13%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-----------RPTELFCPVFHTLPENITP 122
            D  + S     LV      E        Q           RP  +   V   + + I  
Sbjct: 8   DDHTLLSQAISGLVNSFDNFEVLYTCKNGQELLDNLRFENKRPDIILMDVNMPIMDGIEA 67

Query: 123 PAGMDNRY-----CSLTFDVARIRIGLMLLFPKGRIILRD--------RLWEIGLLAAYQ 169
            A +   Y      +L+ +     I  M+       +L+D         L E+ L   Y 
Sbjct: 68  TAQVKELYPTILILALSVEEDDHTILQMIRAGAKGYLLKDTEKKTLENALNELALNGYYH 127

Query: 170 ANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            N         ++      L  RE+E +       T +EIA ++ +S  TV  Y  S+  
Sbjct: 128 TNTVSQLLVKSLNGNNKDALRDREIEFIKHACTEMTYNEIADVMFLSPKTVQGYRDSVFS 187

Query: 227 KTATKTRSGAIAYAVRNNI 245
           K   K R+G + YA++N +
Sbjct: 188 KLNLKNRTGLVIYALKNGL 206


>gi|322386825|ref|ZP_08060449.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321269107|gb|EFX52043.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 199

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +LA  +    +  +V       L+ +E+  L   + G ++ EIA  L +S  T+ NY+++
Sbjct: 117 VLAGQKEYSPELMEVLMTHKNPLSHQELLVLEAAATGLSNKEIAEKLYLSNGTIRNYMST 176

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K A   R+ A+  A     +
Sbjct: 177 ILTKLAADNRTEAVRIAQEQGWI 199


>gi|190576409|ref|YP_001974254.1| putative two component system response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014331|emb|CAQ47978.1| putative two component system response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 221

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT ++   L  +  G+ + +IA  L +S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 ELTPQQFRVLQMLGAGRLNKQIAYDLSVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|223934694|ref|ZP_03626614.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896649|gb|EEF63090.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 229

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 9/172 (5%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPV----FHTLPENITPPAGMDNRY 130
            +V S+ P  ++  + L +K+    +   +      PV     H              R 
Sbjct: 52  ELVKSEKPDLVLADITLPDKNGLELLKDLQAQHPKLPVLVISMHDEALYAERVLRAGGRG 111

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             +  +  +  +  +     G+I + +++    L    +                LT RE
Sbjct: 112 YIMKHEGGKKIMQAIRHVLSGQIFVSEKMSARIL----ELFSGHGTQAASSPIENLTDRE 167

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            E    I EG ++ EIA  + +S  TV  +  +I  K   KT +  I Y VR
Sbjct: 168 FEVFRLIGEGLSTKEIAANMHVSAKTVEVHRMNIKTKLGLKTAAELIRYTVR 219


>gi|183600894|ref|ZP_02962387.1| hypothetical protein PROSTU_04501 [Providencia stuartii ATCC 25827]
 gi|188019220|gb|EDU57260.1| hypothetical protein PROSTU_04501 [Providencia stuartii ATCC 25827]
          Length = 256

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 70/239 (29%), Gaps = 50/239 (20%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +  +     +   +  L+ ++   + ++  +              D P   +  +     
Sbjct: 12  IDSVATNQFYPNLLSWLSSFIAFDNAIVYSF------------EKDAPPRFLSKVEKRNS 59

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF-------------------- 135
           D    + QR   L  P +  L +                F                    
Sbjct: 60  DSVNRIYQRGAYLMDPFYQELQKGGGSQVLTLKELAPKGFYHTDYYLNFYRKTGWCDEAG 119

Query: 136 ---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--------ANMFKSYDV------ 178
              ++   R   +    +    L ++  +  L  A++               DV      
Sbjct: 120 LLLEITADRQLGIFFGNEDEPFLSEKSTQAPLKEAFEIIRSMAKLHKEISPNDVSSHYRL 179

Query: 179 -HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                 F LT RE E +  I EGK S +IA  L IS  TV N+  +I +K    +++  
Sbjct: 180 ADMQTRFGLTPRECEIVELILEGKGSPQIAQSLFISLGTVKNHRKNIYQKLDINSQAEL 238


>gi|119490748|ref|ZP_01623080.1| regulatory protein, LuxR:Tetratricopeptide [Lyngbya sp. PCC 8106]
 gi|119453732|gb|EAW34890.1| regulatory protein, LuxR:Tetratricopeptide [Lyngbya sp. PCC 8106]
          Length = 121

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE      +++G  +  I   LGIS  TV  +I  + +K    +R+   A  +
Sbjct: 55  NPVNLSPREQSIARLVAQGLPNKCIGKELGISPWTVATHIRRVFKKLDVNSRAEMTARLI 114

Query: 242 RNNIV 246
            +N++
Sbjct: 115 HSNLL 119


>gi|186470747|ref|YP_001862065.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197056|gb|ACC75019.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 215

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 16/142 (11%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD------------RLWEIGLLA 166
                AG+D R+  LT       +   L       +L+D             L    +L+
Sbjct: 69  EGMRQAGVDARFIMLTVSDNERDVVAALRAGAHGYLLKDMDPEDLCVSLQKALKGTAVLS 128

Query: 167 AYQ----ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                   +             +LT RE+E   ++  G  +  IA  L IS  TV  ++ 
Sbjct: 129 ESVTGSLVHALSGGQRIPAAQNDLTARELEVFDYLVAGLCNKAIARKLDISVGTVKVHVK 188

Query: 223 SIMRKTATKTRSGAIAYAVRNN 244
            ++RK    +R  A+ +   + 
Sbjct: 189 HVLRKLDLHSRLEAVLWQQEHG 210


>gi|88704024|ref|ZP_01101739.1| two-component system response regulator [Congregibacter litoralis
           KT71]
 gi|88701851|gb|EAQ98955.1| two-component system response regulator [Congregibacter litoralis
           KT71]
          Length = 206

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGK 201
           L     +I    LW    L      + +  D            +LT RE E    +  G 
Sbjct: 102 LQEVAEVIKNGGLWMPPALVQRLITVGQRVDTGKAPASPDYFADLTPREEEVALMVGRGF 161

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + EIA  L +S  TV   + +I  K   + R     Y
Sbjct: 162 NNREIAEALSVSERTVKANLTAIFEKLGLRDRVQLALY 199


>gi|330872684|gb|EGH06833.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 215

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 152 LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAA 203


>gi|134098410|ref|YP_001104071.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911033|emb|CAM01146.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 241

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
               EL+GREVE L  +++G+++ EI   L +S  TV ++++ I RK  T
Sbjct: 172 NTPRELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGT 221


>gi|113866565|ref|YP_725054.1| response regulator [Ralstonia eutropha H16]
 gi|113525341|emb|CAJ91686.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 208

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        L+ RE+  L +++ G ++  IA  L IS  TV+ + A+IM K    +    
Sbjct: 138 EQRESGFARLSNREITILQYLARGHSNKSIAAQLLISSKTVSTHKANIMAKLNVGSLVEM 197

Query: 237 IAYAVRNNIV 246
           + YA R+ +V
Sbjct: 198 VDYARRHQLV 207


>gi|226945892|ref|YP_002800965.1| Response regulator, LuxR family [Azotobacter vinelandii DJ]
 gi|226720819|gb|ACO79990.1| Response regulator, LuxR family [Azotobacter vinelandii DJ]
          Length = 215

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   L+ + +G  + +IA  L +S  TV  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLSMVCDGLLNKQIAYELNVSEATVKAHVTAIFRKLGVRTRTQAA 204


>gi|329927293|ref|ZP_08281574.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5]
 gi|328938596|gb|EGG34980.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5]
          Length = 865

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + LT +E + L  +  G T+  IA  LG++  TV  Y+  I  K    +R  A+  
Sbjct: 799 YGLTPQETQVLALLRRGDTNQSIADELGLTVGTVKVYLNRIYSKLGVSSRVQAVLK 854


>gi|329944777|ref|ZP_08292856.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529913|gb|EGF56803.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 235

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---- 175
           +         Y         +  GL  +     ++    L E+      Q  +       
Sbjct: 93  VRVIEAGAVGYLLKYSASEELDAGLRRVMAGESVLSPGALAELLRYVRSQPALAAPALAA 152

Query: 176 YDVHWGKDF-----------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           YD H  +              L+ RE++ +T  +EG T++EIA  L IS +TV  ++ S 
Sbjct: 153 YDAHAEERQRAVAQARQAAAGLSRRELDVITAAAEGLTTEEIAGRLYISASTVKAHLRSA 212

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             +   + R      A R  ++
Sbjct: 213 QERVGARNRVHLAVLAERAGLL 234


>gi|311897240|dbj|BAJ29648.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 200

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE + L   ++G    EIA    +S  TV NY++S   K   + R  A+  A  
Sbjct: 137 DSPLTPRETDVLELAADGSPVAEIAERAALSPGTVRNYLSSAAGKLGAENRHAAVRIARE 196

Query: 243 NN 244
           + 
Sbjct: 197 HG 198


>gi|260185253|ref|ZP_05762727.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            CPHL_A]
 gi|289445924|ref|ZP_06435668.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis CPHL_A]
 gi|289418882|gb|EFD16083.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis CPHL_A]
          Length = 1085

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 1027 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 1084


>gi|238763420|ref|ZP_04624383.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238763501|ref|ZP_04624463.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238698283|gb|EEP91038.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238698364|gb|EEP91118.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
          Length = 210

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 79  SSDWPFDLVR-CMALSEKDKYYNV--LQRPTELFCPVFHTLPEN----ITPPAGMDNRYC 131
             + P DLV   + L   D +  +  LQ+       +F +        +       N + 
Sbjct: 44  LKNNPVDLVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGFI 103

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S   D++ I      +         + L ++            S      +   L+ RE+
Sbjct: 104 SKNKDISEILFAAQNVLRGYSFFPSETLTQLA--------GQPSSHDPVNRARLLSEREI 155

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 156 NVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|221209676|ref|ZP_03582657.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
 gi|221170364|gb|EEE02830.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
          Length = 244

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 128 NRYCSLTFD---VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             +  L FD    AR   G    F  G I    RL  +   A       +        + 
Sbjct: 127 GAFSLLRFDTRGAARGGDGASTRFAPGEIDALARLQPLAEAALSPLLRTRRGIHRIECEA 186

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LT RE +    + +G+++ EIA  L + + T+  ++  + RK     R+  +
Sbjct: 187 RLTYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 239


>gi|150397182|ref|YP_001327649.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150028697|gb|ABR60814.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 226

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLML-------LFPKGRIILRDRLWEIGLLAAY 168
           +P         +     L   +     G++L       L    R ++  R +  G     
Sbjct: 86  MPGLSCVILAAEMNDEELAEAMRNGVGGVVLKARAQSSLVDCIRAVVAGRTYLAGQSMNS 145

Query: 169 QANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             +  +  D       + LT RE+E     + G  S EIA  LGI+  TV  ++ S+  K
Sbjct: 146 VVSRIRERDAERRAVLQKLTPRELEISRLAASGLRSREIAARLGIAPGTVKLHLHSVYGK 205

Query: 228 TATKTRSGAIAYAVRNNI 245
               TR      A R  +
Sbjct: 206 LNLTTRVELANLAQRLQL 223


>gi|111023892|ref|YP_706864.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
           jostii RHA1]
 gi|110823422|gb|ABG98706.1| possible protein kinase/ transcriptional regulator, LuxR family
           protein [Rhodococcus jostii RHA1]
          Length = 537

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            L   G +A                    T RE +    ++EG T+ EIA  L IS  T 
Sbjct: 450 ALGFSGAVAYALGEQLPPTPTSAADP---TKRERQVAELVAEGLTNKEIAARLTISPRTA 506

Query: 218 NNYIASIMRKTATKTRSGAIAY 239
             ++  ++ K    +R+   A+
Sbjct: 507 QGHVEHLLTKLGFTSRAQIAAW 528


>gi|316934591|ref|YP_004109573.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602305|gb|ADU44840.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 213

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 37/84 (44%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           DR   +G + +          V      +LT RE + L  I  G T+ EIA  + IS  T
Sbjct: 116 DRRQLVGKIKSAIETRAPQQVVPRTSFRQLTMREKQVLDLIVSGSTNKEIAKTMEISHRT 175

Query: 217 VNNYIASIMRKTATKTRSGAIAYA 240
           V  +  +IMRK   ++ +  +  A
Sbjct: 176 VEYHRMNIMRKCGARSSTQLLILA 199


>gi|258652221|ref|YP_003201377.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258555446|gb|ACV78388.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 219

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA   +  ++     G    LT +E   L  I +G T+ +I   + ++  TV NY++S++
Sbjct: 130 AAALMSKIRAEAQDPGPLAGLTEQERVVLDLIGQGMTNRQIGERMFLAEKTVKNYVSSVL 189

Query: 226 RKTATKTRSGAIAYA 240
            K   + R+     A
Sbjct: 190 AKLGMQRRTQVAVLA 204


>gi|296141209|ref|YP_003648452.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296029343|gb|ADG80113.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 206

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 58/198 (29%), Gaps = 27/198 (13%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT-----EL 108
              G+   LL RW    ++ L        P   V  + +   D      +          
Sbjct: 31  AEAGSGTELLARWRRRIDEGL-------PPAVAVLDLQMPGMDGIDTAAELLRLTPGAGT 83

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                H  P  +     +  R        A     ++     G   +   L    + A  
Sbjct: 84  LIVTSHGRPGYLKRALSIGVRGFLPKTAPAATLAQVIRTVHDGGRYVDPELAAEAISAG- 142

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                         D  LT RE + L + ++G + DEIA    ++  T  NY++S + K 
Sbjct: 143 --------------DSPLTPREADVLEFAADGASVDEIARRAHLTPGTTRNYLSSAVAKL 188

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R  A   A     +
Sbjct: 189 GVANRYEATLRARERGWI 206


>gi|257792748|ref|YP_003183354.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Eggerthella lenta DSM 2243]
 gi|317489031|ref|ZP_07947558.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830988|ref|ZP_08164312.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|257476645|gb|ACV56965.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Eggerthella lenta DSM 2243]
 gi|316911898|gb|EFV33480.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486909|gb|EGC89355.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 485

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +    + L DRL   G         F S        ++LT RE E +  I++ K+  EI 
Sbjct: 396 WGASGLSLADRLHVPGP-----RERFMSRCDDLAAQYDLTARETEIMGLIAQRKSRAEIE 450

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             L +S+NTV  ++  +  K    +++  IA
Sbjct: 451 QELFLSQNTVKTHVRHLYAKLGVHSKTDVIA 481


>gi|215402136|ref|ZP_03414317.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            02_1987]
 gi|289744083|ref|ZP_06503461.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            02_1987]
 gi|289684611|gb|EFD52099.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            02_1987]
          Length = 1085

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 1027 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 1084


>gi|167966904|ref|ZP_02549181.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
          Length = 1085

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 1027 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 1084


>gi|2564978|gb|AAB82054.1| hypothetical protein [Rhodobacter capsulatus]
          Length = 250

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT R+ E L W+ +GKTS +IA ILG++  TV  ++         +T + A+  A
Sbjct: 183 PLTARQREVLEWVGDGKTSADIAQILGLTTATVEKHLRLAREALEVETTAQALLKA 238


>gi|7579039|gb|AAF64235.1|AF249735_3 putative response regulator [Pseudomonas putida]
          Length = 216

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAA 204


>gi|311894380|dbj|BAJ26788.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 215

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 7/161 (4%)

Query: 86  LVRCMALSEKDKYYNVLQRPTE------LFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           L+  + +   D    + + P        L    F      +         +       A 
Sbjct: 51  LLLDIRMPVLDGLSALAELPRAAPGTRALVLTTFGERENVLRAITSGGAGFLLKDTAPAE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +         +       I +    +       +    +   LT RE + +  + E
Sbjct: 111 LIQAVRAAATGNAFLSPAATRHI-VDTLAEGPATARGEQARRRLAVLTARERDVVGLLGE 169

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G ++ +    L +S  TV  Y++ I+ K   + R  A   A
Sbjct: 170 GLSNADTGARLRMSEATVKTYVSRILAKLGCENRVQAALLA 210


>gi|221639744|ref|YP_002526006.1| response regulator receiver protein [Rhodobacter sphaeroides KD131]
 gi|221160525|gb|ACM01505.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
          Length = 214

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L A +  +    +     D  LT R+      +  GK++  IA  L +  +TV  +I 
Sbjct: 125 ASLTALRGALPDRAEPQIAVDEHLTERQRAVCDALRRGKSNKIIAGELNLCESTVKVHIR 184

Query: 223 SIMRKTATKTRSGAI 237
           +IM+K   K R+ A 
Sbjct: 185 NIMKKLGAKNRTEAA 199


>gi|71279078|ref|YP_270095.1| LuxR family DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
 gi|71144818|gb|AAZ25291.1| DNA-binding response regulator, LuxR family [Colwellia
           psychrerythraea 34H]
          Length = 216

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            K   LT ++ E L   ++G  + +IA  LG S +T+ ++ + I  K   + R+ A+ 
Sbjct: 145 DKIASLTPKQHEILLMFADGLLNKQIASQLGTSESTIKSHASIIFLKLGVRNRTQAVI 202


>gi|332685604|ref|YP_004455378.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
 gi|332369613|dbj|BAK20569.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
          Length = 201

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  + +G  + +IA  L +S  TV NYI++I+ KT TK+R  AI  A    
Sbjct: 140 PLTDREIEILNLLKKGANTKQIAENLFLSNGTVRNYISAILNKTGTKSRIEAINLANEQG 199

Query: 245 IV 246
            +
Sbjct: 200 WI 201


>gi|31791563|ref|NP_854056.1| LuxR/UHPA family transcriptional regulator [Mycobacterium bovis
            AF2122/97]
 gi|31617149|emb|CAD93256.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
            LUXR/UHPA-FAMILY) [Mycobacterium bovis AF2122/97]
          Length = 1085

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 1027 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 1084


>gi|15607527|ref|NP_214900.1| LuxR/UHPA family transcriptional regulator [Mycobacterium
            tuberculosis H37Rv]
 gi|121636299|ref|YP_976522.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|148660152|ref|YP_001281675.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|215409895|ref|ZP_03418703.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            94_M4241A]
 gi|218752013|ref|ZP_03530809.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis GM
            1503]
 gi|224988771|ref|YP_002643458.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Tokyo 172]
 gi|253797309|ref|YP_003030310.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis KZN 1435]
 gi|254549329|ref|ZP_05139776.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            '98-R604 INH-RIF-EM']
 gi|289552635|ref|ZP_06441845.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis KZN 605]
 gi|289760498|ref|ZP_06519876.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis GM
            1503]
 gi|294995142|ref|ZP_06800833.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            210]
 gi|297632868|ref|ZP_06950648.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis KZN
            4207]
 gi|297729843|ref|ZP_06958961.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis KZN
            R506]
 gi|298523861|ref|ZP_07011270.1| hypothetical transcriptional regulatory protein, luxR/uhpA-family
            [Mycobacterium tuberculosis 94_M4241A]
 gi|306783013|ref|ZP_07421335.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu003]
 gi|306787383|ref|ZP_07425705.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu004]
 gi|306791934|ref|ZP_07430236.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu005]
 gi|306796121|ref|ZP_07434423.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu006]
 gi|306806192|ref|ZP_07442860.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu007]
 gi|306966388|ref|ZP_07479049.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu009]
 gi|306970584|ref|ZP_07483245.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu010]
 gi|307078311|ref|ZP_07487481.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu011]
 gi|313657172|ref|ZP_07814052.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis KZN
            V2475]
 gi|2909507|emb|CAA17392.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
            LUXR/UHPA-FAMILY) [Mycobacterium tuberculosis H37Rv]
 gi|121491946|emb|CAL70409.1| Probable transcriptional regulatory protein (probably
            luxR/uhpA-family) [Mycobacterium bovis BCG str. Pasteur
            1173P2]
 gi|148504304|gb|ABQ72113.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|224771884|dbj|BAH24690.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Tokyo 172]
 gi|253318812|gb|ACT23415.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis KZN 1435]
 gi|289437267|gb|EFD19760.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis KZN 605]
 gi|289708004|gb|EFD72020.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis GM
            1503]
 gi|298493655|gb|EFI28949.1| hypothetical transcriptional regulatory protein, luxR/uhpA-family
            [Mycobacterium tuberculosis 94_M4241A]
 gi|308332180|gb|EFP21031.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu003]
 gi|308335939|gb|EFP24790.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu004]
 gi|308339591|gb|EFP28442.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu005]
 gi|308343445|gb|EFP32296.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu006]
 gi|308347337|gb|EFP36188.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu007]
 gi|308355934|gb|EFP44785.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu009]
 gi|308359891|gb|EFP48742.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu010]
 gi|308363792|gb|EFP52643.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis SUMu011]
 gi|323721239|gb|EGB30299.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|326902212|gb|EGE49145.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis W-148]
 gi|328457096|gb|AEB02519.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
            tuberculosis KZN 4207]
          Length = 1085

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 1027 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 1084


>gi|290960724|ref|YP_003491906.1| regulator [Streptomyces scabiei 87.22]
 gi|260650250|emb|CBG73366.1| putative regulator [Streptomyces scabiei 87.22]
          Length = 799

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY-AVR 242
             LT RE++    +++G+T+ +IA  L I+R T   ++  I+ K     RS   A+ + R
Sbjct: 737 VPLTRRELQVAALVAQGRTNKQIADHLVIARRTAEGHVERILVKLGFHNRSQVAAWFSAR 796

Query: 243 NNI 245
             +
Sbjct: 797 AGL 799


>gi|215429206|ref|ZP_03427125.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            EAS054]
 gi|289752415|ref|ZP_06511793.1| LuxR/UHPA family transcriptional regulator [Mycobacterium
            tuberculosis EAS054]
 gi|289693002|gb|EFD60431.1| LuxR/UHPA family transcriptional regulator [Mycobacterium
            tuberculosis EAS054]
          Length = 1085

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 1027 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 1084


>gi|241258866|ref|YP_002978750.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863336|gb|ACS60999.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 352

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 31/70 (44%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S       +  LT  E   L  ++EG  +  IA  LG S  TV N ++ I  K    +R
Sbjct: 283 RSVRPRAVSEAGLTPAEAALLDLVAEGLDNRAIAERLGKSAKTVRNQLSVIFSKLGVHSR 342

Query: 234 SGAIAYAVRN 243
           S AI  A+  
Sbjct: 343 SQAIVVALSR 352


>gi|15839770|ref|NP_334807.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            CDC1551]
 gi|13879898|gb|AAK44621.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis
            CDC1551]
          Length = 1092

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 1034 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 1091


>gi|86139948|ref|ZP_01058513.1| Two Component Transcriptional Regulator, LuxR family protein
           [Roseobacter sp. MED193]
 gi|85823366|gb|EAQ43576.1| Two Component Transcriptional Regulator, LuxR family protein
           [Roseobacter sp. MED193]
          Length = 210

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   LT RE + +  + +G T+ +I+  L IS  TV +Y+ S+  K     R   + 
Sbjct: 144 KEAERLRLTARESQVVRHLMQGMTNRQISAELNISEKTVKHYVGSLKDKFGAANRLEVVL 203

Query: 239 YAVRNNI 245
            A R  +
Sbjct: 204 EAQRLGV 210


>gi|126174167|ref|YP_001050316.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|125997372|gb|ABN61447.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
          Length = 214

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 14/167 (8%)

Query: 85  DLVR-CMALSEKDKYYNVL----QRPTELFCPVFHTLPE-NITPPAGMDNRYCSLTFDVA 138
           DLV   + L     +  +     + P  +   +  T+ E +      +      L +   
Sbjct: 56  DLVFMDLKLPGMGGFDVIRQLRQRWPEMMIIMLTATVEEKSAREALDVGANGYVLKYSPK 115

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
              +  +    KG+  +   L E  + A           V  G    LT RE + L  I 
Sbjct: 116 STLLAAIKCVCKGKNFIDPSLDERQIAAL--------SGVVDGDMPLLTPREQQVLKLIC 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG+ + +IA  L I   TV  +  ++MRK      +  + +  R  +
Sbjct: 168 EGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMHWVQRLGL 214


>gi|319942872|ref|ZP_08017155.1| regulatory protein [Lautropia mirabilis ATCC 51599]
 gi|319743414|gb|EFV95818.1| regulatory protein [Lautropia mirabilis ATCC 51599]
          Length = 261

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           P        +    V R      L  PK       R+       +  A      +   G+
Sbjct: 131 PKSGSGSAPASHAAVVRPEFQDHLSIPKANAPQGLRVQPAVYPGSNTAPAQPHREYRDGR 190

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ R+   L  +  G  +  I   LG++  TV  +++SI+R     +R+     A+R
Sbjct: 191 HLGLSERQRSVLRLMMLGLPNKSICRELGLAEGTVKVHVSSILRILGISSRAQVAMAAMR 250

Query: 243 NNI 245
           + I
Sbjct: 251 SGI 253


>gi|237730506|ref|ZP_04560987.1| transcriptional regulator FimZ [Citrobacter sp. 30_2]
 gi|226906045|gb|EEH91963.1| transcriptional regulator FimZ [Citrobacter sp. 30_2]
          Length = 210

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 20/173 (11%)

Query: 82  WPFDLV-RCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAG-----MDNRYCSLT 134
           +P DLV   + L   D +  + + +  +    V     ++ +  AG       N + S  
Sbjct: 48  YPVDLVILDIELPGSDGFTLLKRIKSLQENTRVLFLSSKSESFYAGRAIRAGANGFVSKR 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVE 192
            D+  I   + ++         D L           N   + ++  G   D  L+ REV 
Sbjct: 108 KDLNDIYNAVKMILSGYSFFPSDTL-----------NFINNINMKKGVLNDMPLSNREVT 156

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L +++ G ++ EIA  L +S  T++ + A+I  K    T    I YA  + +
Sbjct: 157 VLRYLANGLSNKEIAEQLLLSNKTISAHKANIYAKLGLHTIVELIDYAKMHEL 209


>gi|219556202|ref|ZP_03535278.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T17]
          Length = 992

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 934 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 991


>gi|253991254|ref|YP_003042610.1| two-component response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638302|emb|CAR66925.1| putative two-component response regulator [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782704|emb|CAQ85869.1| putative two-component response regulator [Photorhabdus
           asymbiotica]
          Length = 211

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------LTGRE 190
           V R      +L    + IL   +  +    +Y         VH   +        LT RE
Sbjct: 95  VLRAGALAYVLKTSSQQILLAAITSVAAKKSYVDPNLNQEAVHRLGEGTNDDSTLLTRRE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  ISEG  +  IA +L IS  TV  +  ++MRK      +  + Y+ +  ++
Sbjct: 155 RQILQLISEGNGNRNIAEMLSISVKTVETHRLNMMRKLKVHKVTELLKYSRKLGLI 210


>gi|146281890|ref|YP_001172043.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145570095|gb|ABP79201.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
          Length = 192

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 36/79 (45%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +AN+ +           LT ++   LT + +G  + +IA  L +S  T+  ++ +I RK
Sbjct: 111 DEANVSEEAKAASAGLASLTPQQFRVLTMVCDGLLNKQIAYELSVSEATIKAHVTAIFRK 170

Query: 228 TATKTRSGAIAYAVRNNIV 246
              +TR+ A     +   +
Sbjct: 171 LGVRTRTQAALLLQQMGSI 189


>gi|317489340|ref|ZP_07947854.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911585|gb|EFV33180.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 493

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               + + L+ RE E L  I++G T  EI  +L +S+ TV  +I  I RK    ++S  
Sbjct: 405 SDLSRAYNLSPREEEVLQLIAQGDTVAEIEEVLYVSQGTVKAHINHIYRKFNIHSKSEL 463


>gi|257789885|ref|YP_003180491.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|325832646|ref|ZP_08165444.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|257473782|gb|ACV54102.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|325485967|gb|EGC88427.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 493

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               + + L+ RE E L  I++G T  EI  +L +S+ TV  +I  I RK    ++S  
Sbjct: 405 SDLSRAYNLSPREEEVLQLIAQGDTVAEIEEVLYVSQGTVKAHINHIYRKFNIHSKSEL 463


>gi|170780573|ref|YP_001708905.1| LuxR family transcriptional regulator [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155141|emb|CAQ00241.1| putative LuxR-family transcriptional regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 540

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 151 GRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            R + RD+  ++  +L   +A   +   V       LT RE   +  +++G T  +IA  
Sbjct: 441 DRALARDQHPDVREVLEGVRAGQVR---VEAAPVEPLTDRERIIVACLADGLTVTQIAGR 497

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L IS NTV ++I +  RK   ++RS A+  A    
Sbjct: 498 LFISPNTVKSHIRTAYRKLDARSRSEAVERARALG 532


>gi|54310461|ref|YP_131481.1| LuxR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46914904|emb|CAG21679.1| putative transcriptional regulator, LuxR family [Photobacterium
           profundum SS9]
          Length = 268

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K+R+ A+ 
Sbjct: 207 LTPQQYKVLCMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKSRTQAVI 259


>gi|83943587|ref|ZP_00956046.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           EE-36]
 gi|83845819|gb|EAP83697.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           EE-36]
          Length = 249

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H      LT RE +CL++++ G    EI   L IS  T   +I     K    TR  A+A
Sbjct: 180 HMSVLVNLTPRERDCLSYLAIGLRPAEICWTLKISEKTFEKHIKGAKEKLRASTRDHAVA 239

Query: 239 YAVRNNIV 246
            ++   ++
Sbjct: 240 KSMVLGLI 247


>gi|150018971|ref|YP_001311225.1| LuxR family transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905436|gb|ABR36269.1| regulatory protein, LuxR [Clostridium beijerinckii NCIMB 8052]
          Length = 822

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  ELT RE+E +  +  G    EI+  L I+  TV  +IAS+  K   + ++ AI    
Sbjct: 758 EKIELTPREIEIMKLVYHGYKQSEISDKLNIALVTVKKHIASVYCKLNVRNKTIAINQLK 817

Query: 242 RNNIV 246
              I+
Sbjct: 818 EKGII 822


>gi|228986249|ref|ZP_04146388.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773448|gb|EEM21875.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 187

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  +  K    +   A+   ++  
Sbjct: 121 ELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLG 180

Query: 245 IV 246
            +
Sbjct: 181 YI 182


>gi|167842293|ref|ZP_02468977.1| probable two-component response regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 217

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE + L  I+EG  + ++A  L I+  TV  +  ++MRK      +    +A R
Sbjct: 154 EVALTPRERQVLKLIAEGCRNRDVAERLTITIKTVETHRLNLMRKLDAHNAADLTNWAHR 213

Query: 243 NNI 245
             +
Sbjct: 214 LGL 216


>gi|150024808|ref|YP_001295634.1| two-component system response regulatory protein [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771349|emb|CAL42818.1| Probable two-component system response regulatory protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 222

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E L  I + ++   I+ +L IS NTV  +  ++M+K   K+  G + +AV++++
Sbjct: 160 ITARELEILNLIGQERSGKYISNLLNISVNTVETHRKNLMKKLNVKSSIGLVIFAVKHDL 219

Query: 246 V 246
           +
Sbjct: 220 I 220


>gi|22126270|ref|NP_669693.1| fimbrial Z protein; signal transducer [Yersinia pestis KIM 10]
 gi|45441481|ref|NP_993020.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51596249|ref|YP_070440.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108807299|ref|YP_651215.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|145598492|ref|YP_001162568.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|149366138|ref|ZP_01888173.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|153947114|ref|YP_001401133.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|165927181|ref|ZP_02223013.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939732|ref|ZP_02228274.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009343|ref|ZP_02230241.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210811|ref|ZP_02236846.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401017|ref|ZP_02306520.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420230|ref|ZP_02311983.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167466513|ref|ZP_02331217.1| DNA-binding response regulator, LuxR family protein [Yersinia
           pestis FV-1]
 gi|170024496|ref|YP_001721001.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186895283|ref|YP_001872395.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218929039|ref|YP_002346914.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229894596|ref|ZP_04509777.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229897323|ref|ZP_04512479.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|21959244|gb|AAM85944.1|AE013841_9 fimbrial Z protein; probable signal transducer [Yersinia pestis KIM
           10]
 gi|4106621|emb|CAA21376.1| unnamed protein product [Yersinia pestis]
 gi|45436342|gb|AAS61897.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51589531|emb|CAH21161.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108779212|gb|ABG13270.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|115347650|emb|CAL20563.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|145210188|gb|ABP39595.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|149292551|gb|EDM42625.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|152958609|gb|ABS46070.1| DNA-binding response regulator, LuxR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|165912320|gb|EDR30955.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920849|gb|EDR38097.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991898|gb|EDR44199.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207991|gb|EDR52471.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961925|gb|EDR57946.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049406|gb|EDR60814.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|169751030|gb|ACA68548.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
 gi|186698309|gb|ACC88938.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229693660|gb|EEO83709.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229702351|gb|EEO90369.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262361879|gb|ACY58600.1| putative two-component response regulator [Yersinia pestis D106004]
 gi|262365982|gb|ACY62539.1| putative two-component response regulator [Yersinia pestis D182038]
          Length = 210

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 79  SSDWPFDLVR-CMALSEKDKYYNV--LQRPTELFCPVFHTLPEN----ITPPAGMDNRYC 131
             + P DLV   + L   D +  +  LQ+       +F +        +       N + 
Sbjct: 44  LKNNPVDLVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGFI 103

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S   D++ I      +         + L ++            S      +   L+ RE+
Sbjct: 104 SKNKDISEILFAAQNVLRGYSFFPSETLTQLA--------GQPSSHDPVNRARLLSEREI 155

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 156 NVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|86138703|ref|ZP_01057276.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
 gi|85824763|gb|EAQ44965.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
          Length = 204

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L+ + +G+++ EIA  L +   T+  ++ ++ RK   K R+ A   A    
Sbjct: 143 KLSPRENEVLSGLCKGQSTKEIARDLDLQEVTIKLHVRTLCRKLEAKNRTQAAMIAKEAG 202

Query: 245 I 245
           +
Sbjct: 203 L 203


>gi|324996115|gb|EGC28026.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|327460591|gb|EGF06926.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327488948|gb|EGF20745.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|332365506|gb|EGJ43266.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 199

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLDAENRTEAVRIGQEQG 197


>gi|311067079|ref|YP_003972002.1| response regulator [Bacillus atrophaeus 1942]
 gi|310867596|gb|ADP31071.1| response regulator [Bacillus atrophaeus 1942]
          Length = 159

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 1/140 (0%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLA 166
           +    F    +  T        Y   +     ++  L L++  G  I +         + 
Sbjct: 20  MLMTTFEDTLQAATALEHGAKGYMLKSIHPREMKEALKLIYNGGTWIDQSVATRVFEEIK 79

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             +  + K         + LT RE+E L  +S G     IA  L +S  TV NY + +  
Sbjct: 80  RQREQLEKIDSSKESYPYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTVRNYCSKLYS 139

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K     R  AI  A   NIV
Sbjct: 140 KLDVNNREEAIKMARTENIV 159


>gi|309810898|ref|ZP_07704699.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308435204|gb|EFP59035.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 202

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L D +  +            +  + +G +  LT RE++ L   + G T  +IA  + +S 
Sbjct: 112 LADAVRRVHAGLRVVDPQLAADSLVFG-ESPLTARELDVLRAAAAGGTVADIARAVFLSE 170

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            TV N+++S + KT  +TR+ A+  A  N 
Sbjct: 171 GTVRNHLSSAIGKTGGRTRADAVRIAQENG 200


>gi|307565420|ref|ZP_07627909.1| hemerythrin HHE cation binding domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345870|gb|EFN91218.1| hemerythrin HHE cation binding domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 318

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G  + EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 251 LSDREKEVIIALVQGMANKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|260906853|ref|ZP_05915175.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 209

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 33/83 (39%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           D L    L     +   +       +   L+ RE +    ++ G+T+ EI   L IS  T
Sbjct: 116 DALISPSLTLDLLSRRAQDTRTGEDRLAGLSERENDVARLVARGRTNQEICAELYISLGT 175

Query: 217 VNNYIASIMRKTATKTRSGAIAY 239
           V +++ SI  +   + R    A 
Sbjct: 176 VKSHLGSIQTRLGARNRVEIAAR 198


>gi|148977193|ref|ZP_01813820.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145963475|gb|EDK28738.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 209

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVI 202


>gi|111026298|ref|YP_708581.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110825141|gb|ABH00423.1| protein kinase/ transcriptional regulator, LuxR family [Rhodococcus
            jostii RHA1]
          Length = 1090

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 187  TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            T RE E    ++EG T+ EIA  L IS  T   +I  ++ K    +R+   A+ V + 
Sbjct: 1029 TKREREVAELVAEGLTNREIASRLTISVRTAQGHIEHLLAKLGFTSRAQIAAWVVESR 1086


>gi|18250686|emb|CAD20930.1| RaiR protein [Rhizobium leguminosarum]
          Length = 265

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 19/201 (9%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               L      + ++   +P + V+     +      V++     F PV  +  +  +  
Sbjct: 66  ACDPLSGATASNPLLMLTYPPEWVKQYLERDYFSIDPVVRLGRRGFLPVEWSASKWDSGQ 125

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR----------------DRLWEIGLLAA 167
           A    +  ++ F V R  + L +  P G   L                 D + ++  LA 
Sbjct: 126 AYGFFK-EAMAFGVGRQGVTLPVRGPHGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAH 184

Query: 168 YQANMFK-SYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +  +       +    DF +L+ RE++CL   + G  + +I   L IS + V  Y+AS  
Sbjct: 185 HLHDRAMVLSGMRKITDFPQLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASAR 244

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           RK    T S A+A A    ++
Sbjct: 245 RKLTVATTSEAVAKATALELI 265


>gi|330959238|gb|EGH59498.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 215

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 152 LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAA 203


>gi|325686801|gb|EGD28826.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 199

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLNAENRTEAVRIGQEKG 197


>gi|297563514|ref|YP_003682488.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847962|gb|ADH69982.1| transcriptional regulator, LuxR family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 995

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           RLW     A  +A              ELT ++ +    ++EG T+ E+A  + IS  TV
Sbjct: 912 RLWVRQTRAELRAIGTAERGPDPVSTSELTAQQQQIARLVAEGATNREVAAHMFISPRTV 971

Query: 218 NNYIASIMRKTATKTRSGAIA 238
            +++  I RK   ++R     
Sbjct: 972 EHHLRGIFRKLNIRSRVDLAR 992


>gi|288919194|ref|ZP_06413532.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349441|gb|EFC83680.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 215

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 12/219 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++  D      + +  L E       VG +   L   DL +    D +   D     
Sbjct: 1   MIRVVIADDQPLIRLGLKVLIETEADLELVGEAENGLAALDLVRRVSPD-VALLDIRMPG 59

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  +A   +      L     +    F              + +     + A +   + +
Sbjct: 60  LDGLAALREITADPALAATRVVIVTTFELDEYVFEALRNGASGFVLKDAEPADLLRAIRV 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     ++       +    A + +   + D+       LTGRE E +  +  G ++DEI
Sbjct: 120 VAAGESLLSPTVTRRVIEAFARRPSAPAAVDLS-----GLTGREREVMGLVGMGLSNDEI 174

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L IS  T   +++ +M K A + R+     A +  +
Sbjct: 175 AAHLVISPATARTHVSRVMIKLAARDRAQLAVLANQAGL 213


>gi|238789482|ref|ZP_04633267.1| Two-component response regulator [Yersinia frederiksenii ATCC
           33641]
 gi|238722432|gb|EEQ14087.1| Two-component response regulator [Yersinia frederiksenii ATCC
           33641]
          Length = 210

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 79  SSDWPFDLVR-CMALSEKDKYYNV--LQRPTELFCPVFHTLPEN----ITPPAGMDNRYC 131
             + P DLV   + L   D +  +  LQ+       +F +        +       N + 
Sbjct: 44  LKNNPVDLVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGFI 103

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S   D++ I      +         + L ++            S      +   L+ RE+
Sbjct: 104 SKNKDISEILFAAQNVLRGYSFFPSETLTQLA--------GQPSSHDPVNRARLLSEREI 155

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 156 NVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|146310654|ref|YP_001175728.1| transcriptional regulator FimZ [Enterobacter sp. 638]
 gi|145317530|gb|ABP59677.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 210

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  L+ REV  L +++ G ++ EIA  L +S  T++ + ++I  K   +T    I YA 
Sbjct: 146 NDMPLSNREVTVLRFLANGLSNKEIAEQLLLSNKTISAHKSNIYTKLGVQTIVELIDYAK 205

Query: 242 RNNIV 246
            + ++
Sbjct: 206 AHELL 210


>gi|86156744|ref|YP_463529.1| LuxR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773255|gb|ABC80092.1| transcriptional regulator, LuxR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 341

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 13/150 (8%)

Query: 90  MALSEKDKYYNVLQRPTELF------CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           ++ +  +    V +R  E+       CP    L         ++ R    T      ++ 
Sbjct: 191 LSGAGAEAALRVGRRCHEVLHGRPSPCPGCPALRGGGEAWPRVEVRRAPRT---GGFQVA 247

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                P   +++  R  +   LAA    + ++      + FEL+ RE E L  +  G+ +
Sbjct: 248 TATALPGDEVLISVRRVDDAALAA----VREARTAELVRRFELSPREEEVLRLLLIGRQA 303

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +I   LGI+  T   + A+++RK    +R
Sbjct: 304 ADIGTALGITPRTAKFHQANVLRKLGASSR 333


>gi|330967898|gb|EGH68158.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 215

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 152 LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAA 203


>gi|315647681|ref|ZP_07900782.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315276327|gb|EFU39670.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 201

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +  L+ RE+E L    EG T+ EI+  L ++  TV NY++S ++K    +R  A A A
Sbjct: 138 ENPLSEREIEMLRLTKEGMTTGEISKALFLTTGTVRNYLSSAIQKLEADSRQQAAAIA 195


>gi|306822493|ref|ZP_07455871.1| DNA-binding response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801387|ref|ZP_07695514.1| putative oxygen regulatory protein NreC [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554038|gb|EFM41947.1| DNA-binding response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221902|gb|EFO78187.1| putative oxygen regulatory protein NreC [Bifidobacterium dentium
           JCVIHMP022]
          Length = 220

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   LT RE + +  ++EG  + EIA  L +S  TV N I+ I+ KT    R+    
Sbjct: 155 APDRFAHLTDRERDVVELVAEGLDNREIAAKLFLSEGTVRNRISDILAKTNISNRTKLAV 214


>gi|302529845|ref|ZP_07282187.1| hypothetical protein SSMG_06227 [Streptomyces sp. AA4]
 gi|302438740|gb|EFL10556.1| hypothetical protein SSMG_06227 [Streptomyces sp. AA4]
          Length = 170

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 1/138 (0%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLAAY 168
            PV     E    PA +    C++   + R R     L            +     L   
Sbjct: 33  APVVLLANEEAAGPAVLTAVECNVVALLDRERTSSEQLAAAVLTAAHGGAILPPAALGTP 92

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            +++ +           LT RE++ L  ++EG  + E A  +  S   V   I  + ++ 
Sbjct: 93  LSHVRRPTHPRPTHSSGLTQREIDVLRLLAEGLDTAETAEKINFSERAVKKVIHDLSQRL 152

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + R+ A+AYA+RN  +
Sbjct: 153 DLRNRTHAVAYALRNGAI 170


>gi|222778561|gb|ACM67367.1| OtcG [Streptomyces rimosus]
          Length = 237

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 23/145 (15%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLA-----AYQANM 172
           + + P G+ +   ++     R +  ++  F    ++ +  +L   G L      A     
Sbjct: 58  DGSEPYGVVSGVEAMHRVSPRSQCIILTSFHHPALVQQALQLRVSGFLTKNLRRAEVLAA 117

Query: 173 FKSYDVHWGKDF-----------------ELTGREVECLTWISEGKTSDEIAVILGISRN 215
            +S   H G+ F                  L+ RE++ +  ++ G ++ +IA  L I+  
Sbjct: 118 IRSVTSHPGQIFMSVPKESMAALPHTSTARLSARELQIMENVARGLSNSQIAARLTITEA 177

Query: 216 TVNNYIASIMRKTATKTRSGAIAYA 240
           TV  +++++  K    +R  A+  A
Sbjct: 178 TVKRHLSNVFEKLGAVSRIDAVNKA 202


>gi|188990243|ref|YP_001902253.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732003|emb|CAP50191.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris]
          Length = 281

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 36/69 (52%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   ++      K  +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K  
Sbjct: 202 AERSEADAQLAAKLAQLTPQQFRVLLCLADGLLNKQIAHELGLAENTVKVHVTAILKKLD 261

Query: 230 TKTRSGAIA 238
             +R+ A  
Sbjct: 262 CYSRTQAAV 270


>gi|148555884|ref|YP_001263466.1| response regulator receiver protein [Sphingomonas wittichii RW1]
 gi|148501074|gb|ABQ69328.1| response regulator receiver protein [Sphingomonas wittichii RW1]
          Length = 208

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + +GK +  IA  L IS  TV  Y A++M K   ++ + A+  A    +
Sbjct: 143 LTPRERDVLLGLIDGKANKIIAYELDISPRTVEIYRANLMDKLGVRSVAEAVRIAFAAGL 202

Query: 246 V 246
           V
Sbjct: 203 V 203


>gi|258653777|ref|YP_003202933.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258557002|gb|ACV79944.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 209

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 14/159 (8%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLL 147
            +  +E  +    L RP  +     +    +I P        Y     D A +   +   
Sbjct: 63  GIDGAETTRRIQRLPRPPRVLVLTTYDTDADILPAIEAGATGYLLKDTDPAELIAAIHAA 122

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++          +A    +  ++          LT RE + L  +++G ++  IA
Sbjct: 123 AAGDTVLAPS-------VATRLVSRVRAPG------IMLTPRETQVLQMVADGLSNQGIA 169

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L I+  TV +++  +  K    +R+ A A A +  ++
Sbjct: 170 KELFITEATVKSHLVQVFTKLGVDSRTAATAAARQRGLI 208


>gi|126652652|ref|ZP_01724813.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus sp. B14905]
 gi|169829490|ref|YP_001699648.1| germination protein [Lysinibacillus sphaericus C3-41]
 gi|299535535|ref|ZP_07048856.1| germination protein [Lysinibacillus fusiformis ZC1]
 gi|126590501|gb|EAZ84619.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus sp. B14905]
 gi|168993978|gb|ACA41518.1| Germination protein [Lysinibacillus sphaericus C3-41]
 gi|298728735|gb|EFI69289.1| germination protein [Lysinibacillus fusiformis ZC1]
          Length = 73

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    +   KT+ +IA  LGIS  TV N+I++ ++K     RS A+   +R
Sbjct: 10  LTNREREIFALLLAEKTTRDIAEQLGISEKTVRNHISNTIQKLGVTNRSQALIELLR 66


>gi|332828196|gb|EGK00908.1| hypothetical protein HMPREF9455_02697 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 216

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E E L  I+ G+T+ EIA    +S +T+  +  +I RK        AI YA+R
Sbjct: 146 DHILTVTEKEILKEIALGRTTKEIASNRNLSFHTIITHRKNIFRKLEVNNVHEAIKYAMR 205

Query: 243 NNIV 246
             +V
Sbjct: 206 AGLV 209


>gi|271966260|ref|YP_003340456.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270509435|gb|ACZ87713.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 957

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           G+   L+ R+ +     ++G T+ EIA  + +S  TV+ ++   MRK   ++R+  
Sbjct: 892 GEAEGLSARQSQVARLAAKGLTNQEIARQMFLSPKTVDKHLGVAMRKLGARSRTEL 947


>gi|239933771|ref|ZP_04690724.1| response regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 188

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ +  ++EG  + +IA  L  S  T+ + I  +  +   + R+ A+AYA+R   
Sbjct: 128 LTPREVDVMRLVAEGFGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAYALREGY 187

Query: 246 V 246
           +
Sbjct: 188 I 188


>gi|297566766|ref|YP_003685738.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296851215|gb|ADH64230.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 192

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ELT RE   L  + +G ++ E+A  LG+S +TV +++  +  K + + R  A+  A
Sbjct: 131 ELTPREKTVLRLLVQGLSTKEMAQELGLSPDTVKDHLERLYGKLSARNRVEALERA 186


>gi|298249276|ref|ZP_06973080.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297547280|gb|EFH81147.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1035

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 61/189 (32%), Gaps = 7/189 (3%)

Query: 58   ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
             SH+L                 S     +V      +  +  NV  R   L  P      
Sbjct: 854  FSHYL-------DRPGDPPSALSFLALSVVALFHAGQSTRAQNVATRLLTLTEPEGMLRV 906

Query: 118  ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                 P         L          +    P    IL     E    A  QA    ++ 
Sbjct: 907  YLDAGPLMKQALTMLLEVPHHDESCTVASFRPYVLRILAASEQEGHESAHAQAAHLSNHR 966

Query: 178  VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                    L+ +E + L  +  G+T  E+A  L +S NT+ + ++SI RK     R+ A+
Sbjct: 967  HPQALLSPLSRQEQQVLRLLMVGQTYAEMAQTLVVSLNTIKSQVSSIYRKLGVSRRTEAM 1026

Query: 238  AYAVRNNIV 246
            A   R N++
Sbjct: 1027 AVTTRLNLL 1035


>gi|253987957|ref|YP_003039313.1| monoamine regulon transcriptional regulator MoaR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779407|emb|CAQ82568.1| similar to monoamine regulon transcriptional regulator moar
           [Photorhabdus asymbiotica]
          Length = 219

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             + D+       LT +E E +  +  G ++  IA +L IS +TV  ++ +I  KT    
Sbjct: 146 LATRDLLPETPTILTAKEQEIINLVRAGSSNKRIAQVLNISLSTVKTHLRNIFIKTKVTN 205

Query: 233 RSGAIA 238
           R+  ++
Sbjct: 206 RTELVS 211


>gi|71736868|ref|YP_273631.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71557421|gb|AAZ36632.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 208

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 10/204 (4%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
             + +  L E  G    ++   D   +     +     P  ++  + + + D    V+ R
Sbjct: 13  IRLAVRMLMERHGYE--VIAETDNGVDAL--QLALEHLPDIVILDIGIPKLDG-LEVIAR 67

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFD--VARIRIGLMLLFPKGRIILRDRLWEI 162
            + +  P F  L      P     R         V + +    LL     ++     +  
Sbjct: 68  LSAMTLP-FKVLILTSQAPGHFSMRCMQAGAAGYVCKQQDLTELLSAIKAVLSGYSYFPN 126

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L   +++M  + +        L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y  
Sbjct: 127 QALHTVRSSMGNASESDMVDR--LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKT 184

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ K    +    I  A RN +V
Sbjct: 185 RLLLKLNAHSLVDLIELAQRNGLV 208


>gi|330984843|gb|EGH82946.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 208

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 10/204 (4%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
             + +  L E  G    ++   D   +     +     P  ++  + + + D    V+ R
Sbjct: 13  IRLAVRMLMERHGYD--VIAETDNGVDAL--QLAREHLPDIVILDIGIPKLDG-LEVIAR 67

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFD--VARIRIGLMLLFPKGRIILRDRLWEI 162
            + +  P F  L      P     R         V + +    LL     ++     +  
Sbjct: 68  LSAMTLP-FKVLILTSQAPGHFSMRCMQAGAAGYVCKQQDLTELLSAIKAVLSGYSYFPN 126

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L   +++M  + +        L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y  
Sbjct: 127 QALHTVRSSMGNASESDMVDR--LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKT 184

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ K    +    I  A RN +V
Sbjct: 185 RLLLKLNAHSLVDLIELAQRNGLV 208


>gi|330896102|gb|EGH28323.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 116

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 53  LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAA 104


>gi|314915868|gb|EFS79699.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
          Length = 206

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R  
Sbjct: 145 PLSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204


>gi|300313791|ref|YP_003777883.1| response regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300076576|gb|ADJ65975.1| response regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 64/198 (32%), Gaps = 16/198 (8%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ-RPTE 107
           +  L    G +       D F + +L ++        L+  M +   D +  V +     
Sbjct: 18  LLRLLASAGYAAHGFASADEFLQARLPAVPCC-----LLLDMKMPGSDGFEVVRRLERRG 72

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
              PV         P      +  +  F          L  P     L   + E   +A 
Sbjct: 73  DAIPVIFISGYGTIPTTVQAMKAGAHEF----------LTKPIQDERLLGAVEEALQIAE 122

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            Q      +     +   LT RE E L     G  + +IA  LGIS  TV  +   +M K
Sbjct: 123 RQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVMDK 182

Query: 228 TATKTRSGAIAYAVRNNI 245
             TKT +  +  A R  I
Sbjct: 183 MQTKTLADLVRAAERLQI 200


>gi|226363077|ref|YP_002780859.1| serine/threonine protein kinase [Rhodococcus opacus B4]
 gi|226241566|dbj|BAH51914.1| putative serine/threonine protein kinase [Rhodococcus opacus B4]
          Length = 1087

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%)

Query: 156  RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            + R  ++    +Y                +LT RE +    I+EG T+  IA  L I++ 
Sbjct: 996  QGRKMDLDAAVSYALGERPQKVTAPSGSVKLTKREQQVAELIAEGLTNKAIAARLVIAQR 1055

Query: 216  TVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            T   ++  I+ K    +R+   ++ V   
Sbjct: 1056 TAQGHVERILAKLGFTSRAQVASWVVEER 1084


>gi|189353456|ref|YP_001949083.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189337478|dbj|BAG46547.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 244

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 128 NRYCSLTFD---VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             +  L FD    AR   G    F  G I    RL  +   A       +        + 
Sbjct: 127 GAFSLLRFDTRGAARGGDGASTRFAPGEIDALARLQPLAEAALTPLLRTRRGIHRIECEA 186

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LT RE +    + +G+++ EIA  L + + T+  ++  + RK     R+  +
Sbjct: 187 RLTYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 239


>gi|125718762|ref|YP_001035895.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323350426|ref|ZP_08086089.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498679|gb|ABN45345.1| Two-component system transcriptional regulator (CheY domain and
           HTH-like DNA-binding domain), putative [Streptococcus
           sanguinis SK36]
 gi|322123363|gb|EFX95041.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|327462857|gb|EGF09179.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
          Length = 199

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLNAENRTEAVRIGQEKG 197


>gi|329938783|ref|ZP_08288179.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302274|gb|EGG46166.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 212

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 16/117 (13%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + S T    R+   +  +    R I  +       LAA         D     D  LT
Sbjct: 110 RGFVSKTVSAQRLAEIIRTVHAGNRYIDPE-------LAA---------DAISTGDSPLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE E L + ++G    EIA    ++  TV NY++S + K   + R  A+  A  + 
Sbjct: 154 AREAEVLEFAADGAPVAEIAERAALAEGTVRNYLSSAVSKLGVENRHAAVRLAREHG 210


>gi|315608389|ref|ZP_07883377.1| transcriptional regulator [Prevotella buccae ATCC 33574]
 gi|315249849|gb|EFU29850.1| transcriptional regulator [Prevotella buccae ATCC 33574]
          Length = 318

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 22/226 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRM-----YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           R  L+A +   D      +R+     +++T ++     ++     + ++ LD  VSS + 
Sbjct: 100 RKQLVAALDENDNLARLILRLYDEYAHSITNHMKYEEKMVF---PYVQRLLDGEVSSTYD 156

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +            +    Q+  EL   +   LP +       +N+  +  +++      
Sbjct: 157 IETFSK-------HHGQTDQKVRELRNIIIKYLPSDGLH----NNQLSATLYNIYNNEDW 205

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEG 200
           L +       I    +  +   +       K  ++   +   +  L+ RE + +  + +G
Sbjct: 206 LNMHAQVEDHIFIPVIRRLEAKSKQNDVSVKISNMINQNPNAEDMLSDREKDVIVSLVQG 265

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+ EIA  L IS NTV  +  +I +K    + +G   YA+ NN+V
Sbjct: 266 MTNKEIADHLCISINTVITHRRNIAKKLQIHSPAGLTIYAIVNNLV 311


>gi|315106440|gb|EFT78416.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 206

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R  
Sbjct: 145 PLSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204


>gi|313840174|gb|EFS77888.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
          Length = 206

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R  
Sbjct: 145 PLSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204


>gi|256393338|ref|YP_003114902.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256359564|gb|ACU73061.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 998

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE +    +  G ++ +IA  L +S  TV +++ ++ RK    +R     
Sbjct: 938 LTDRERQIALLVGAGHSNRQIATRLFLSERTVESHMGNVYRKLGVASRVALAR 990


>gi|157827467|ref|YP_001496531.1| putative transcriptional regulator [Rickettsia bellii OSU 85-389]
 gi|157802771|gb|ABV79494.1| Putative transcriptional regulator [Rickettsia bellii OSU 85-389]
          Length = 288

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V  GK  +L+ RE EC+ ++S G +  EI  IL +S  TV +++ SI +KT    +S  
Sbjct: 211 EVKTGKYNKLSYRETECIYYLSLGNSMKEIGSILNLSPRTVEHHLNSIKQKTGLLYKSQL 270

Query: 237 IAYAVRN 243
           +   ++N
Sbjct: 271 VKEFIKN 277


>gi|167032249|ref|YP_001667480.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166858737|gb|ABY97144.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 216

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAA 204


>gi|91205195|ref|YP_537550.1| putative transcriptional regulator [Rickettsia bellii RML369-C]
 gi|91068739|gb|ABE04461.1| Putative transcriptional regulator [Rickettsia bellii RML369-C]
          Length = 285

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V  GK  +L+ RE EC+ ++S G +  EI  IL +S  TV +++ SI +KT    +S  
Sbjct: 208 EVKTGKYNKLSYRETECIYYLSLGNSMKEIGSILNLSPRTVEHHLNSIKQKTGLLYKSQL 267

Query: 237 IAYAVRN 243
           +   ++N
Sbjct: 268 VKEFIKN 274


>gi|313149427|ref|ZP_07811620.1| response regulator receiver protein [Bacteroides fragilis 3_1_12]
 gi|313138194|gb|EFR55554.1| response regulator receiver protein [Bacteroides fragilis 3_1_12]
          Length = 251

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  I  GKTS EIA  L IS+NTV+ +  +I+ K   K    A   A    +
Sbjct: 190 LSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEACRIAKELKL 249

Query: 246 V 246
           +
Sbjct: 250 L 250


>gi|307329198|ref|ZP_07608364.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306885228|gb|EFN16248.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 190

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G T+ E+A  L +S  TV NY+++ ++KTA + R+ A+  A    
Sbjct: 129 PLTAREREVLHASADGSTNAELARALHLSPGTVRNYLSTAIQKTAARNRAEAVRIAREKG 188


>gi|302336508|ref|YP_003801715.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Olsenella uli DSM 7084]
 gi|301320348|gb|ADK68835.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Olsenella uli DSM 7084]
          Length = 328

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL-------AAYQANMFKSYDVHWGKDFE 185
            + +V  + +  ++  P    +LR R  E   +       A    +  +     +     
Sbjct: 212 FSENVMMVYLAYVVCKPAIE-MLRLRFNEPPAMPGSGREAAGPLIDHIEERPPGYAAAHG 270

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           L+ RE E L+   EG+++ EIA  L ++  T+  ++ +IMRK A   R
Sbjct: 271 LSRREREILSLALEGRSNREIASELTLAEGTIKTHLHNIMRKCAVANR 318


>gi|256392340|ref|YP_003113904.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
            44928]
 gi|256358566|gb|ACU72063.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM
            44928]
          Length = 1089

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LT RE E    ++ G+ S  IA  L +S  TV  ++A I RK    +R+   
Sbjct: 1026 LTTREREIAALVATGRRSRAIADELFLSHRTVETHLARIYRKLNVSSRTALA 1077


>gi|239926639|ref|ZP_04683592.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291434955|ref|ZP_06574345.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291337850|gb|EFE64806.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 236

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 52/150 (34%), Gaps = 11/150 (7%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG-R 152
               Y    +   EL  PV   L    +    MD    ++   +  +  G   L P+  R
Sbjct: 80  RVLAYSTHPEHEDELLLPV---LTAGASGFLTMDTEPRAVLAAIRAVARGDSWLEPQHTR 136

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            ++ + +   G   A                 +L+ RE E    I  G T+ EIA  L +
Sbjct: 137 RLINEYVAGTGAAPAGVGPRVPLPP-------QLSIREREVTALIGRGCTNTEIAEHLCL 189

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S  T   Y++ +M K   + R      A R
Sbjct: 190 SPLTAKKYVSRLMAKLGARDRVQLALIAAR 219


>gi|254787619|ref|YP_003075048.1| two-component regulator [Teredinibacter turnerae T7901]
 gi|237683412|gb|ACR10676.1| two-component regulator [Teredinibacter turnerae T7901]
          Length = 257

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE + +  ++EG+++ +I+  L I  +TV N++ +++ K   K R+ A 
Sbjct: 173 LTPRERQVIGLLAEGQSNKQISRTLCIELSTVKNHVHNLLIKLKAKNRAHAA 224


>gi|256832883|ref|YP_003161610.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256686414|gb|ACV09307.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 207

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           R    G +   +  + +    H     +LT  E+  +  I EG ++ EIA  L I+  TV
Sbjct: 112 RAVAAGRVLLDERTVTRRRKEHDDPTEDLTPSELRVVELIGEGLSNREIAERLSIAEKTV 171

Query: 218 NNYIASIMRKTATKTRSGAIAY-AVRNN 244
            N+I S++ K   + R+   A+ A R +
Sbjct: 172 KNHITSLLAKMGWQRRTQVAAWVAARKH 199


>gi|85703125|ref|ZP_01034229.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
 gi|85672053|gb|EAQ26910.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
          Length = 251

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E L W+ +GKT  +IA+I+G++ +TV  ++       + +T + A+  A   N 
Sbjct: 186 LTPRQREVLGWVGDGKTVQDIAIIMGLTSDTVEKHLRLARHALSVETTAQAVLKAAFQNQ 245

Query: 246 V 246
           +
Sbjct: 246 I 246


>gi|307726738|ref|YP_003909951.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. CCGE1003]
 gi|307587263|gb|ADN60660.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia sp. CCGE1003]
          Length = 900

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE +  +++  ++  IA+ L I+  TV   + +I  K    +R  A+ +A ++++
Sbjct: 839 LTQREVEIIGLVAQAMSNKRIALSLNITLETVKWNLRNIFGKLGVSSRYDAMVWARKHDL 898

Query: 246 V 246
           +
Sbjct: 899 I 899


>gi|270294588|ref|ZP_06200790.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276055|gb|EFA21915.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 261

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE+  L  + +G  S EIA  L +S NT+N +  +I+ K        A+  A R
Sbjct: 193 EEPLTNRELSVLQLMKQGLLSKEIANSLNVSINTINTHRQNILLKLKANNSIEAVNIAQR 252

Query: 243 NNIV 246
             ++
Sbjct: 253 LGLL 256


>gi|269956829|ref|YP_003326618.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305510|gb|ACZ31060.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 927

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            +  + L           ++    LA  +A          G   +LT +E       + G
Sbjct: 823 AVAQLRLARDHFDRSGAAVFLPRTLAELEAAGVTEDVAAHGDALDLTTQERTVARLAAAG 882

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +T+ EI   L IS NTV+ ++  + +K    +R    
Sbjct: 883 RTNAEIGANLFISPNTVDYHLRKVFQKLGITSRRQLA 919


>gi|228990002|ref|ZP_04149975.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
 gi|228769668|gb|EEM18258.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
          Length = 201

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 36/78 (46%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                ++          L+ RE E L ++ +G +  EIA  L IS  TV+ +   ++ K 
Sbjct: 121 MLKRLQNETESRNPYVILSPREREVLQFLVKGFSLSEIAQELTISIKTVDTHKTRMLNKL 180

Query: 229 ATKTRSGAIAYAVRNNIV 246
               +S  + YA++ N++
Sbjct: 181 NLSKKSELVQYAIKYNLI 198


>gi|256376371|ref|YP_003100031.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920674|gb|ACU36185.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 956

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  G    L+GRE E    +SEG T+ EIA  L +S  TV  ++A +  K   ++R
Sbjct: 886 PRRPEAVGTVESLSGREREVARLVSEGLTNREIAERLSLSAKTVEAHLARVFTKLGVRSR 945

Query: 234 SGAI 237
            G +
Sbjct: 946 VGVV 949


>gi|212715195|ref|ZP_03323323.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661876|gb|EEB22451.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM
           16992]
          Length = 218

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + ++  +EG    EIA  L IS  T+  +I SI+RK   KT   A+A  VR+N
Sbjct: 158 LTVREEQIISLCAEGMLDREIAERLRISEATIRKHIQSILRKLNCKTSRQAVALWVRSN 216


>gi|154486396|ref|ZP_02027803.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis
           L2-32]
 gi|154084259|gb|EDN83304.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis
           L2-32]
          Length = 221

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISR 214
           +RL    ++  ++     +  +   ++    LT RE + ++  ++G    EIA  L IS 
Sbjct: 130 ERLCGGNVMEGFEPPALANVRIRREEETSPRLTVREEQIISLCADGMLDREIAERLDISE 189

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           NTV  ++  I++K   KT   A+A  VR++
Sbjct: 190 NTVRKHMQGILKKLNCKTARQAVALWVRSH 219


>gi|150377229|ref|YP_001313824.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150031776|gb|ABR63891.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 230

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---------LTGREV 191
            +G   L    R IL   ++    +A   +   ++       +           LT R+ 
Sbjct: 109 GLGATDLAEAVRAILHGSVYVPPSMAGRVSPAEEAKPPARVGEAPQGSHRTIEFLTPRQR 168

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           E L  + +G ++ EIA  L +   TV  ++A++ R    + R  A A   R
Sbjct: 169 EVLQLLVQGLSNKEIARKLKLGEGTVKIHMAALFRSLRVRNRQEAAAAGAR 219


>gi|319785037|ref|YP_004144513.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170925|gb|ADV14463.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 224

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 14/103 (13%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----------LTGREVECLTWISEGKTS 203
           IL  R++   LL+       +       +             LT R+ E L  ++EG ++
Sbjct: 119 ILAGRIYVPALLSQRSKESVRLPSEAPTQMPHRTISVNNLGRLTSRQKEVLRLMAEGYSN 178

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA----YAVR 242
            EIA  L I+  T   + A+++R+   + R+ A      +A R
Sbjct: 179 KEIARSLEIAEATTKIHAAAVLRELGARNRTEAAVLLKTWAAR 221


>gi|299069597|emb|CBJ40869.1| putative transcription regulator protein, LuxR family [Ralstonia
           solanacearum CMR15]
          Length = 89

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            ++      +       LT R+ + L   + GK++ EIA  L IS  TV  ++  I+ + 
Sbjct: 7   VSHADAPIPMARPHHPMLTTRQQDILREAAFGKSNAEIAQSLHISVETVKTHVRQILMRL 66

Query: 229 ATKTRSGAIAY---AVRNN 244
             + R+   A    A+ ++
Sbjct: 67  EARNRTELAAMYQQALHHH 85


>gi|228990612|ref|ZP_04150577.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           pseudomycoides DSM 12442]
 gi|228769138|gb|EEM17736.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           pseudomycoides DSM 12442]
          Length = 55

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G  + EI   L IS +TV  +I +I  K     R  AI  A+ + ++
Sbjct: 2   LIVLATGAINKEIGEKLFISISTVKTHIINIYTKLQVSNRVEAIKKALEHGLI 54


>gi|300777043|ref|ZP_07086901.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
 gi|300502553|gb|EFK33693.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
          Length = 229

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ++ RE E L  I +   + EIA +L IS  TV  +  S++ KT  K  +G + YA+ + 
Sbjct: 158 HISKREKEVLELICKQYNTAEIADLLFISSRTVEGHRNSLLLKTGAKNTAGLVVYAIESK 217

Query: 245 I 245
           I
Sbjct: 218 I 218


>gi|16263826|ref|NP_436618.1| putative response regulator [Sinorhizobium meliloti 1021]
 gi|15139950|emb|CAC48478.1| probable response regulator [Sinorhizobium meliloti 1021]
          Length = 211

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 72/201 (35%), Gaps = 21/201 (10%)

Query: 47  MRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQ 103
           + +  L + + A+  F +V       + +  ++S   P   V  +A+           ++
Sbjct: 12  LLLRGLQDIIAAAPDFDVVGATASGVEAIS-LISGLQPDIAVLDVAMPGMGGLEILRAIR 70

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
            P  L   +F T   +             +   +     GL+L       +L D +  + 
Sbjct: 71  NPRRLTRVIFLTATISG----------PQIAEALKMGLSGLLLKEYAPEALL-DCMRRVA 119

Query: 164 -----LLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
                L A   AN  + S D    +   LT RE E    I  G ++  IA  LG S  TV
Sbjct: 120 MGGKWLPADLMANASQVSNDAPLERFSLLTPREREISALICGGLSNRMIASRLGTSEGTV 179

Query: 218 NNYIASIMRKTATKTRSGAIA 238
             ++ +I RK     R+   A
Sbjct: 180 GIHLHNIFRKLDISNRATLAA 200


>gi|299820669|ref|ZP_07052558.1| LuxR family DNA-binding response regulator [Listeria grayi DSM
           20601]
 gi|299817690|gb|EFI84925.1| LuxR family DNA-binding response regulator [Listeria grayi DSM
           20601]
          Length = 214

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 10/175 (5%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELF------CPVFHTLPENITPPAGMDNRYC 131
           + S+ P  ++  +++   +      +R TE F          H     IT       +  
Sbjct: 42  IESNRPDIVLMDLSMPPGENGLLTTKRITEAFPETKVILLTMHDEEAYITQALQAGAQGY 101

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
            +      + +  +     G+II+          ++ Q    K  D        L+ RE 
Sbjct: 102 IMKNSSEELLLDAIRSVMGGQIIIDPVFN----YSSKQIEQLKRADASENIIERLSKREK 157

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I+ G  + EIA  L IS  TV  + + IM+K   K  S  + + V+  ++
Sbjct: 158 EILPLIALGYGNKEIAERLFISAKTVEVHKSHIMKKLEMKKFSDLLRFCVKEQLI 212


>gi|120598578|ref|YP_963152.1| two component LuxR family transcriptional regulator [Shewanella sp.
           W3-18-1]
 gi|146293343|ref|YP_001183767.1| two component LuxR family transcriptional regulator [Shewanella
           putrefaciens CN-32]
 gi|120558671|gb|ABM24598.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. W3-18-1]
 gi|145565033|gb|ABP75968.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens CN-32]
 gi|319426643|gb|ADV54717.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens 200]
          Length = 220

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 149 ASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|327472321|gb|EGF17752.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 199

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLNAENRTEAVRIGQEKG 197


>gi|324989912|gb|EGC21854.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
          Length = 199

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLNAENRTEAVRIGQEKG 197


>gi|303237703|ref|ZP_07324263.1| hemerythrin HHE cation binding domain protein [Prevotella disiens
           FB035-09AN]
 gi|302482155|gb|EFL45190.1| hemerythrin HHE cation binding domain protein [Prevotella disiens
           FB035-09AN]
          Length = 313

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 246 LSDREKDVIISVVQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAGLTIYAIVNNL 305

Query: 246 V 246
           V
Sbjct: 306 V 306


>gi|289644027|ref|ZP_06476126.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289506152|gb|EFD27152.1| GAF modulated transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 372

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L  I  G+T+  IA  L +   TV  ++A ++RK    +R+ A A  +R  
Sbjct: 312 LSTREREVLDLIVAGETNSGIARELVLGEQTVKTHVAHVLRKLGATSRAEAAARYLRMR 370


>gi|256376535|ref|YP_003100195.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920838|gb|ACU36349.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 221

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  RE E    ++ G +++E+A  L +S  TV  Y++ +  K   + R+  +  A R  
Sbjct: 154 LGVREREVAAGVARGLSNEEVAAELSLSLATVKTYLSRVFDKVGVRDRTQLVVLAYRTG 212


>gi|255036046|ref|YP_003086667.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254948802|gb|ACT93502.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 214

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 12/128 (9%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            I      D     L   V  I  G   L    + I++ R                    
Sbjct: 99  GIMGYVPKDAGKEELHAAVRSIMDGKPYLPDSVKEIIKTR------------ESRPDPHD 146

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +   + LT REV+ LT ++   ++ EIA  L +S  TV  Y  SI+RK A K  +  + 
Sbjct: 147 DFVSMYNLTKREVDILTEVAREFSTAEIADKLCLSEYTVETYRKSIIRKLAAKNIASLVN 206

Query: 239 YAVRNNIV 246
           +A +  ++
Sbjct: 207 FAHKWKLI 214


>gi|171742616|ref|ZP_02918423.1| hypothetical protein BIFDEN_01729 [Bifidobacterium dentium ATCC
           27678]
 gi|283456303|ref|YP_003360867.1| response regulatorof two-component system [Bifidobacterium dentium
           Bd1]
 gi|171278230|gb|EDT45891.1| hypothetical protein BIFDEN_01729 [Bifidobacterium dentium ATCC
           27678]
 gi|283102937|gb|ADB10043.1| Response regulatorof two-component system [Bifidobacterium dentium
           Bd1]
          Length = 220

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   LT RE + +  ++EG  + EIA  L +S  TV N I+ I+ KT    R+    
Sbjct: 155 APDRFAHLTDRERDVVELVAEGLDNREIAAKLFLSEGTVRNRISDILAKTNISNRTKLAV 214


>gi|170743088|ref|YP_001771743.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168197362|gb|ACA19309.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 244

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +         +LT R+ E L  +++G ++ EIA  L I+  T   + A+++R    + R
Sbjct: 137 PASIALPSDRLKLTPRQHEILPLLAQGMSNKEIANSLNIAAGTAKIHTAALLRALGARNR 196

Query: 234 SGAIAYAVR 242
           + A   A +
Sbjct: 197 TEAAFIAAK 205


>gi|90420801|ref|ZP_01228707.1| two-component response regulator, LuxR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335092|gb|EAS48853.1| two-component response regulator, LuxR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 212

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y + + D A +   +  +    R +  D   EI           +  +       
Sbjct: 98  AGASGYVTKSSDPAELVQAIEAILAGRRAMSPDIAQEIA---------EERVEGRATAIA 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  ++ G TSDEIA  L +S  TV N    I  K   +T +  +  A+   
Sbjct: 149 DLSPRETEILRMLASGMTSDEIAAGLCLSVKTVQNNHYQIKAKLGARTDAHLVWVAIEAG 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|13992202|emb|CAC38026.1| alkB1GHJ regulator [Alcanivorax borkumensis]
          Length = 872

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKD 183
            + S  F    I+  LM   P  R +  D L E     A +    +  +           
Sbjct: 751 EHLSCYFTRDWIKEALMSFSPIARDLF-DTLPESAETNATKDLEVRKEEADARPKLTNTQ 809

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +T +++  L  +S G T+ EIA  L I+ +TV  ++  I  +     R  A++ A   
Sbjct: 810 STITIKQISLLKCVSSGMTNKEIAERLLITEDTVKWHLKKIFSELKVTNRVQAVSEARLR 869

Query: 244 NIV 246
            ++
Sbjct: 870 GLL 872


>gi|13661776|gb|AAK38095.1|AF323606_1 putative regulatory protein [Rhodococcus erythropolis]
          Length = 531

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
           ++  +  A +     +     G    LT RE +    I+EG T+  IA  L IS  T   
Sbjct: 445 FDAAIAYALREQPPSTSGPTAGGSTRLTKRERQVAGLIAEGLTNQAIADRLVISPRTAQG 504

Query: 220 YIASIMRKTATKTRSGAIAYAVRN 243
           ++  I+ K    +R+   A+ V  
Sbjct: 505 HVEHILAKLGFTSRAQVAAWVVER 528


>gi|330943805|gb|EGH46060.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 220

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 3/140 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +        P+ I     +  +   L    A      +         L   + ++ +  A
Sbjct: 79  VLILSAQNDPDMIMRTLDIGAQGYLLKDTTAAELEQALEALRGNERYLSPAIAQMVIECA 138

Query: 168 YQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +     S      K+ F LT R++E L  I  GK++ EIA  LG+S  T+  + A +M+
Sbjct: 139 LRG--TPSDRAQAAKERFRLTARQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMK 196

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           +      +G + + VR  I+
Sbjct: 197 RLQIFDVAGLVLFFVRERII 216


>gi|288926112|ref|ZP_06420040.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
 gi|288337152|gb|EFC75510.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
          Length = 313

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 22/226 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRM-----YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           R  L+A +   D      +R+     +++T ++     ++     + ++ LD  VSS + 
Sbjct: 95  RKQLVAALDENDNLARLILRLYDEYAHSITNHMKYEEKMVF---PYVQRLLDGEVSSTYD 151

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +            +    Q+  EL   +   LP +       +N+  +  +++      
Sbjct: 152 IETFSK-------HHGQTDQKVRELRNIIIKYLPSDGLH----NNQLSATLYNIYNNEDW 200

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV---HWGKDFELTGREVECLTWISEG 200
           L +       I    +  +   +       K  ++   +   +  L+ RE + +  + +G
Sbjct: 201 LNMHAQVEDHIFIPVIRRLEAKSKQNDVSVKISNMINQNPNAEDMLSDREKDVIVSLVQG 260

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+ EIA  L IS NTV  +  +I +K    + +G   YA+ NN+V
Sbjct: 261 MTNKEIADHLCISINTVITHRRNIAKKLQIHSPAGLTIYAIVNNLV 306


>gi|257094984|ref|YP_003168625.1| two component LuxR family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047508|gb|ACV36696.1| two component transcriptional regulator, LuxR family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 205

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 39/104 (37%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y  +   V  +R+G      K   + +        L   +     S  V       LT 
Sbjct: 86  GYADVPTAVRAMRLGAFDFLEKPFNVQQLIERVNAALRLAEERRAGSRAVTDDWRQSLTA 145

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           RE E L  I  GK +  IA  LGIS  TV  + A IM K+   +
Sbjct: 146 RETEVLDGIVSGKRNKVIAADLGISERTVETHRARIMEKSGANS 189


>gi|256158896|ref|ZP_05456746.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|256254270|ref|ZP_05459806.1| Monoamine regulon transcriptional regulator [Brucella ceti B1/94]
          Length = 245

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|218710848|ref|YP_002418469.1| LuxR family transcriptional regulator [Vibrio splendidus LGP32]
 gi|218323867|emb|CAV20228.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
          Length = 209

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVI 202


>gi|218260595|ref|ZP_03475826.1| hypothetical protein PRABACTJOHN_01489 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224454|gb|EEC97104.1| hypothetical protein PRABACTJOHN_01489 [Parabacteroides johnsonii
           DSM 18315]
          Length = 261

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE+  L  + +G  S EIA  L +S NT+N +  +I+ K        A+  A R
Sbjct: 193 EEPLTNRELSVLQLMKQGLLSKEIANSLNVSINTINTHRQNILLKLKANNSIEAVNIAQR 252

Query: 243 NNIV 246
             ++
Sbjct: 253 LGLL 256


>gi|194367128|ref|YP_002029738.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194349932|gb|ACF53055.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 216

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    R +L   LW   +     A   ++  +   +  +LT ++   L  +++G  + +I
Sbjct: 114 IGEAVRAVLDGGLWFPAM----AAERSEADALLASRLAQLTPQQFRVLLCLADGLLNKQI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           A  LG++ NTV  ++ +I++K    +R+ A  
Sbjct: 170 AYTLGLAENTVKVHVTAILKKLECHSRTQAAV 201


>gi|84497370|ref|ZP_00996192.1| putative two component response regulator [Janibacter sp. HTCC2649]
 gi|84382258|gb|EAP98140.1| putative two component response regulator [Janibacter sp. HTCC2649]
          Length = 245

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G++F LT RE E +  ++ G ++ EIA    +S N+V +YI S  R     +RS A+ +
Sbjct: 152 PGREFGLTPRESEIIALVTAGLSNLEIAERTYLSINSVKSYIRSAYRTMDVTSRSKAVLW 211

Query: 240 AVRNN 244
            + + 
Sbjct: 212 GIDHG 216


>gi|94313944|ref|YP_587153.1| LuxR family LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357796|gb|ABF11884.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Cupriavidus metallidurans CH34]
          Length = 947

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            RL   G      +    +          L+ RE + +  + +   + +IA  LG+S  T
Sbjct: 857 SRLRATGATNPMTSARAAAPATLRTLAEPLSEREADVVELLGQALPNKKIARTLGLSPET 916

Query: 217 VNNYIASIMRKTATKTRSGAIAY 239
           V  ++ +I RK    +R  A+A 
Sbjct: 917 VKWHLRNIFRKLGVTSRDEAVAR 939


>gi|303256885|ref|ZP_07342899.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
 gi|330998866|ref|ZP_08322593.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|302860376|gb|EFL83453.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
 gi|329576080|gb|EGG57599.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 220

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 10/162 (6%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------GMDNRYCSLTFDVARIRI 142
            + L +      +++            L  N  P +           Y   T D   ++ 
Sbjct: 59  DLGLPDSQGTDLLVRLLQNYPALKILVLSGNCDPDSILKALSAGAAGYVPKTLDANLLKS 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +   G  I    L +   +        +   V+      LT R+ + L  +S+G +
Sbjct: 119 TINFVLEGGVYIPSKILSQQQSM----GMSPQQPVVNPSSKVHLTTRQCQVLKLLSQGDS 174

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
              I   + +S  T+  ++ ++ R    + R+ A+  A RN 
Sbjct: 175 IKTICRKMDLSEGTIKTHVTALYRAFDARNRTEALIAARRNG 216


>gi|297157233|gb|ADI06945.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 259

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 9/157 (5%)

Query: 85  DLVRCM--ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           DLV  +   ++  D    VL         V   +P  +      D         V    +
Sbjct: 52  DLVERLVPDMALVDLRMPVLDGVAATAEIVALPVPTRVLILTTYDTDAEIER-AVEAGAV 110

Query: 143 GLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           G +L     + +  D +        +LA   A    +  +   +   LT RE + L  ++
Sbjct: 111 GYLLKDTTRQQL-ADAIRSAARGETVLAPKVAERLVAR-MRRPEPVALTARERDVLHAVA 168

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +G ++ EI   L I   TV  ++  +  K     R+G
Sbjct: 169 DGLSNAEIGRRLVIGEATVKTHLLRVFAKLDVSDRAG 205


>gi|293604654|ref|ZP_06687055.1| LuxR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292816941|gb|EFF76021.1| LuxR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 218

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++ D H   +  LT RE+    + + G+ + +IA  LGI+  TV  +++++  K     R
Sbjct: 137 RAQDSHSWDNGVLTEREITVARYAASGQANAQIAEALGITERTVKAHLSAVFEKLGVSDR 196

Query: 234 SGAI 237
               
Sbjct: 197 LQLA 200


>gi|197116849|ref|YP_002137276.1| LuxR family helix-turn-helix transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086209|gb|ACH37480.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter bemidjiensis Bem]
          Length = 216

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 64/190 (33%), Gaps = 15/190 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L R        +D  +      D  R +           L   ++    V   L
Sbjct: 37  GAEAIRLAREKRPDVTVMDITMPDLNGIDATRAIIAEWPQARVLALSMESDRRF-VVEVL 95

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLL-FPKGRIILRDRLWEIGLLAAYQANMFKS 175
                     D+ +  L   +  +  G   L      +++++ L  I             
Sbjct: 96  KAGANGYVLKDSAFAELATAIRAVATGETYLPSRVTTLLIKEYLQRI------------- 142

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D        L+ RE E L  I++G+ + EIA   G+S  TV N   SIM+K    + + 
Sbjct: 143 PDEVPATYENLSQREREILQLIADGRNAKEIAFSFGVSVKTVENQRHSIMKKLDLFSIAE 202

Query: 236 AIAYAVRNNI 245
              YAVR  +
Sbjct: 203 LTKYAVRQGL 212


>gi|82699111|ref|YP_413685.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|163842464|ref|YP_001626868.1| monoamine regulon transcriptional regulator [Brucella suis ATCC
           23445]
 gi|189023446|ref|YP_001934214.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225851728|ref|YP_002731961.1| monoamine regulon transcriptional regulator [Brucella melitensis
           ATCC 23457]
 gi|254690497|ref|ZP_05153751.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|254696618|ref|ZP_05158446.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254701000|ref|ZP_05162828.1| Monoamine regulon transcriptional regulator [Brucella suis bv. 5
           str. 513]
 gi|254709343|ref|ZP_05171154.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|254731531|ref|ZP_05190109.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|256030866|ref|ZP_05444480.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256045986|ref|ZP_05448858.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256112698|ref|ZP_05453619.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           bv. 3 str. Ether]
 gi|256264760|ref|ZP_05467292.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260169768|ref|ZP_05756579.1| Monoamine regulon transcriptional regulator [Brucella sp. F5/99]
 gi|260546468|ref|ZP_05822208.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260563267|ref|ZP_05833753.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|261759311|ref|ZP_06003020.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|294851595|ref|ZP_06792268.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL
           07-0026]
 gi|82615212|emb|CAJ10153.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           biovar Abortus 2308]
 gi|163673187|gb|ABY37298.1| Monoamine regulon transcriptional regulator [Brucella suis ATCC
           23445]
 gi|189019018|gb|ACD71740.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225640093|gb|ACO00007.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           ATCC 23457]
 gi|260096575|gb|EEW80451.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260153283|gb|EEW88375.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|261739295|gb|EEY27291.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|263095169|gb|EEZ18838.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|294820184|gb|EFG37183.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL
           07-0026]
 gi|326408219|gb|ADZ65284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326537934|gb|ADZ86149.1| monoamine regulon transcriptional regulator [Brucella melitensis
           M5-90]
          Length = 245

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|221195955|ref|ZP_03569002.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
 gi|221202628|ref|ZP_03575647.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221176562|gb|EEE08990.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221182509|gb|EEE14909.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
          Length = 244

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 128 NRYCSLTFD---VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             +  L FD    AR   G    F  G I    RL  +   A       +        + 
Sbjct: 127 GAFSLLRFDTRGAARGGDGASARFAPGEIDALARLQPLAEAALSPLLRTRRGIHRIECEA 186

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LT RE +    + +G+++ EIA  L + + T+  ++  + RK     R+  +
Sbjct: 187 RLTYREEQIARLVRDGRSNKEIARDLALGQPTIKTHLMRMYRKLGVSNRTELV 239


>gi|221215548|ref|ZP_03588511.1| transcriptional regulator, LuxR family protein [Burkholderia
           multivorans CGD1]
 gi|221164536|gb|EED97019.1| transcriptional regulator, LuxR family protein [Burkholderia
           multivorans CGD1]
          Length = 261

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             F            LT R+ + L+ +  G  +  IA  L ++  TV+N+I +++R    
Sbjct: 166 RCFPDPGSECDPLQRLTNRQRDVLSLLCVGYPTKVIASTLRLAEGTVDNHIGNVLRVLNA 225

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ AI  AV    +
Sbjct: 226 HNRAHAIYKAVALGYL 241


>gi|251800174|ref|YP_003014905.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547800|gb|ACT04819.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2]
          Length = 229

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 42/63 (66%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + L+ +E+  + +I++G T+ EIA  L I+ +TV  +I ++M KT+++ R+ A+A   R 
Sbjct: 166 YALSEKELRVMQYIADGFTTKEIAPFLNIAESTVKYFINNVMLKTSSRNRTEAVANLYRA 225

Query: 244 NIV 246
           N++
Sbjct: 226 NLL 228


>gi|53713956|ref|YP_099948.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60682160|ref|YP_212304.1| putative DNA-binding response regulator [Bacteroides fragilis NCTC
           9343]
 gi|253567050|ref|ZP_04844501.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|265764304|ref|ZP_06092872.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|52216821|dbj|BAD49414.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60493594|emb|CAH08383.1| putative DNA-binding response regulator [Bacteroides fragilis NCTC
           9343]
 gi|251944174|gb|EES84683.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|263256912|gb|EEZ28258.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|301163639|emb|CBW23192.1| putative DNA-binding response regulator [Bacteroides fragilis 638R]
          Length = 202

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E +  + +G T+ EIA  L +S +TV  +  +I +K    + +G   YA+ 
Sbjct: 131 QENLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIV 190

Query: 243 NNIV 246
           N +V
Sbjct: 191 NKLV 194


>gi|27375497|ref|NP_767026.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27348634|dbj|BAC45651.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 211

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 158 RLWE-IGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           RL E IG  A  QA         +H+     LT RE E L   + G ++ E    LGIS 
Sbjct: 118 RLDEAIGAYARRQAENAAPKFGSLHFPGREPLTRREREVLEQFAAGASNKEAGRTLGISP 177

Query: 215 NTVNNYIASIMRKTATKTRSGAIA 238
            T+ ++ A+IM+K   +  +  I 
Sbjct: 178 RTIEDHRANIMKKLGARNAADLIR 201


>gi|86147901|ref|ZP_01066206.1| Response regulator [Vibrio sp. MED222]
 gi|85834328|gb|EAQ52481.1| Response regulator [Vibrio sp. MED222]
          Length = 209

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVI 202


>gi|315505507|ref|YP_004084394.1| ATP-dependent transcriptional regulator, malt-like, luxr family
           [Micromonospora sp. L5]
 gi|315412126|gb|ADU10243.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Micromonospora sp. L5]
          Length = 905

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 34/61 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G +  LTG+++     ++EG T+ EIA  + +S  TV++++ ++  +   ++R+   
Sbjct: 842 VRHGPEQLLTGQQLHIARLVAEGATNREIATRMCLSTRTVDHHLRNVFHRLGVRSRTELA 901

Query: 238 A 238
            
Sbjct: 902 R 902


>gi|256392635|ref|YP_003114199.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256358861|gb|ACU72358.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
           DSM 44928]
          Length = 227

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+GRE + L  IS G T  +IA  LGIS +TV+ Y+  I  K     ++     A+
Sbjct: 154 LSGREAQVLRHISLGLTHGQIATRLGISPHTVDTYVKRIRSKLGAGNKAELTRAAL 209


>gi|239944416|ref|ZP_04696353.1| LuxR family transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239990873|ref|ZP_04711537.1| LuxR family transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291447883|ref|ZP_06587273.1| response regulator receiver protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350830|gb|EFE77734.1| response regulator receiver protein [Streptomyces roseosporus NRRL
           15998]
          Length = 240

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 18/201 (8%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +   DL  +  +   +      +L+             V+    E    + H L  N + 
Sbjct: 41  VYAEDLILQTGMIHQLRVRPEIELLPEAEADRAQVSLVVVDTVGETTVQLLHRLQRNTST 100

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-----------------GLL 165
             G+   Y         I  G+  +  +G    +DRL  +                  LL
Sbjct: 101 RTGLVVGYFESGALQTMIECGVAAVLRRGEA-DQDRLVHLVRAMANGEGVLPGDLLGKLL 159

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               +      D        LT RE E +  +SEG  + EIA     S  TV N +  + 
Sbjct: 160 DHVSSLQRTVLDPRGLTLSTLTAREAEMIRLVSEGCDTAEIAQKTSYSERTVKNVLHEVA 219

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            +   + R+ A+ YA+R+ ++
Sbjct: 220 TRLELRNRAHAVGYAMRHGLI 240


>gi|182412471|ref|YP_001817537.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839685|gb|ACB73937.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 225

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 14/215 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++ +D +    M + ++    GA+  ++V  +        S      P  ++  + L +
Sbjct: 9   RVLVVDDSALVRMGLRSVLGTHGAAARIVVAGEADSVASAVSETKRLKPDVVLLDIRLPD 68

Query: 95  KDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
               +   +          L      T              Y     D   +   ++  F
Sbjct: 69  GSGLHACREIKRMDASTRVLILTSVATDELIQEAVMAGAQGYLMKEIDPDGLTRAIVDAF 128

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIA 207
               ++  +       + A    + +      G     L+ +E   L  +++G T+ E+A
Sbjct: 129 AGKSVLTPE-------ITARVLQLLREGPPAAGDSLAVLSAQERRVLALVADGLTNKEVA 181

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             L +S NTV NY+ S+  K   K RS A A  V+
Sbjct: 182 EKLRLSDNTVKNYLVSVFEKLQVKRRSQAAAVYVQ 216


>gi|146302355|ref|YP_001196946.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146156773|gb|ABQ07627.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 219

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 11/179 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-------LFCPVFHTLPENITPPAGMDN 128
            +V++  P  L+  + +        V+++          +   +  +    +       +
Sbjct: 44  EVVTATKPDLLIVDIRMPNLTG-IEVVEKLRSENNNVKIIMLSMHESEEYVLKSIKAGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
            Y             L  +   G+    D     I  L    A++        G++  +T
Sbjct: 103 GYLLKGSSKEEFLKALHAVSSGGKYFSGDISSILISQLTNSTASLEPK--QTLGEEMMIT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E LT +  GK + EIA  L IS+ T   +  ++M+K   K        A   +++
Sbjct: 161 KREKEILTLLLSGKGNKEIAEALEISKRTAEVHRFNLMKKLKVKNLMELSNKAAEYSLI 219


>gi|333024388|ref|ZP_08452452.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744240|gb|EGJ74681.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 201

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 2/122 (1%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +   T +   +   +  +     ++         LLA +               
Sbjct: 82  RAGAAGFLLKTAEAGELVAAVRTVAAGEGVVDPAVTRR--LLAEFARGGTGRERPAPEGL 139

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L+ + EG  + EIA  + ++  TV ++++ ++ K   + R  A   A   
Sbjct: 140 ARLTPREREVLSCLGEGLGNAEIAQRIDVAEGTVKSHVSRLLAKLELRNRLQASLLARDL 199

Query: 244 NI 245
            +
Sbjct: 200 GL 201


>gi|302522704|ref|ZP_07275046.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302431599|gb|EFL03415.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 226

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 6/161 (3%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTE---LFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + +   D       + +RP     L    FH   + +         +      
Sbjct: 49  PAVVLMDLRMPGTDGLTATERIRERPEAPEVLVLTTFHADEQVLRALRAGAAGFLLKDTP 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +  +     ++       +    A   +     D    +   L  RE E    
Sbjct: 109 PAEIAAAVREVARGRPVLSPLVTRRLIAQVAGGDSPHARRDRARARLASLAEREREVALA 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  G ++ EIA  L +S  TV  +++ ++ K     R    
Sbjct: 169 VGRGASNAEIAAELYLSVPTVKAHVSRVLAKLHLNNRVQIA 209


>gi|229822633|ref|YP_002884159.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568546|gb|ACQ82397.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 216

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
            H   + +        R   +           +     G +IL   + E  +  +Y    
Sbjct: 84  MHEDDDAVVASVRAGARGFLVKSSPPDAVERAVRAVAAGEMILSPAVAERAM--SYVLGG 141

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            ++  + +    +LT RE E L  ++ G  +  IA  L +S  TV N +A+++ K + + 
Sbjct: 142 QRAARLPFP---QLTDREREVLDLVAHGLDNTAIARRLSLSPKTVRNTVATVLAKLSLRD 198

Query: 233 RSGAIAYAVRNNI 245
           RS AI  A    +
Sbjct: 199 RSAAIVRARAEGL 211


>gi|229588732|ref|YP_002870851.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229360598|emb|CAY47455.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 216

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 12/113 (10%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--F 184
            + +   +  +  I+  +  +             EI +          S +    +D   
Sbjct: 102 ASGFIPKSSAMEEIQKAVRAVLDGDVSWPPQAFEEINV----------SDEAKAARDGLA 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 152 SLTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAA 204


>gi|212709059|ref|ZP_03317187.1| hypothetical protein PROVALCAL_00091 [Providencia alcalifaciens DSM
           30120]
 gi|212687971|gb|EEB47499.1| hypothetical protein PROVALCAL_00091 [Providencia alcalifaciens DSM
           30120]
          Length = 248

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F LT RE E +  I EGK S +IA  L IS  TV N+  +I +K    +
Sbjct: 186 FGLTPRECEVVALILEGKGSPQIAESLFISLGTVKNHRKNIYQKLDINS 234


>gi|326446507|ref|ZP_08221241.1| hypothetical protein SclaA2_35812 [Streptomyces clavuligerus ATCC
           27064]
          Length = 207

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R+ E    ++ G ++ +IA  L IS  TV N+I  +MR+    +R G   +A
Sbjct: 127 LTPRQTEVSQLVALGLSNKQIARQLEISEWTVVNHIREVMRRLGCASRVGIARWA 181


>gi|261221423|ref|ZP_05935704.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|265997385|ref|ZP_06109942.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260920007|gb|EEX86660.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|262551853|gb|EEZ07843.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 254

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 240


>gi|269125139|ref|YP_003298509.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268310097|gb|ACY96471.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM
           43183]
          Length = 266

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 74/227 (32%), Gaps = 14/227 (6%)

Query: 22  FVSHLPTRSDLLARMI-PLDCTVSWTMRMYALTEYV---GASHFLLVRWDLFQEQKLDSI 77
             +      DL+ R    L        R   +T+Y+     SH       + +E     +
Sbjct: 47  RGARTTALQDLVVRSGTGLGGKAMALRRPVTVTDYLHAREISHH--YDRPVAREGLHAIL 104

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
                    V  +  +   +     +R   L   +   + + +         +  L    
Sbjct: 105 AVPLLTAGQVTGVLYAGLRQRLEFGERMQRLAMSLAGEVRQRMAAAQQPPAVHLRLREAC 164

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +     ++       +R  L  +       A    +     G+   L+ RE E L+  
Sbjct: 165 RDLE---RVIARVHDPAVRAELEAVR--RRLAAETRPAAPPAAGR---LSRREHEALSHA 216

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++G  + EIA  +G++  TV  Y+ S+MRK   + R  A+  A    
Sbjct: 217 AQGLPNAEIAARMGLTPGTVKAYLRSVMRKLGCRNRMEAVNRARALG 263


>gi|84393053|ref|ZP_00991819.1| Response regulator [Vibrio splendidus 12B01]
 gi|84376305|gb|EAP93187.1| Response regulator [Vibrio splendidus 12B01]
          Length = 209

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ 
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVI 202


>gi|325276680|ref|ZP_08142406.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|324098187|gb|EGB96307.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 254

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGK------DFELTGREVECLTWISEGKTSDEIAVIL 210
           D L++    A  Q    ++ D    +        +L+ R++E    +S+GKT+ +IA  L
Sbjct: 151 DELYQELEKARGQGAHRRATDADESESELPAAFEKLSPRQLEVARLVSKGKTNYQIACEL 210

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAI 237
           GI+ NTV  Y++ ++R T    R+   
Sbjct: 211 GITENTVKLYVSQVLRLTHMHNRTQLA 237


>gi|322836842|ref|YP_004210756.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9]
 gi|321165929|gb|ADW71629.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 207

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 22/170 (12%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
             P  LV  + + +       ++          L    F                Y    
Sbjct: 52  HLPAVLVTDIEMPQVTGLDLAIRVKELYPSTRVLILTTFARPGYLRRALDAGAVGYLLKD 111

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +    R+I      + GL A       +S+    G    LT RE E L
Sbjct: 112 CPSTEMAEAVRRVAHGERVI------DPGLAA-------ESWSADAG---PLTEREREVL 155

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
               EG+++ E+A  L ++  T+ NY++  + K     R+ A   A    
Sbjct: 156 RRAGEGESTAELARTLRLTEGTIRNYLSEAISKLGAHNRTEAARLARAKG 205


>gi|260756053|ref|ZP_05868401.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759277|ref|ZP_05871625.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760999|ref|ZP_05873342.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|261316853|ref|ZP_05956050.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261751522|ref|ZP_05995231.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|265987924|ref|ZP_06100481.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265992398|ref|ZP_06104955.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994141|ref|ZP_06106698.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|260669595|gb|EEX56535.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671431|gb|EEX58252.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676161|gb|EEX62982.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|261296076|gb|EEX99572.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261741275|gb|EEY29201.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262765122|gb|EEZ11043.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263003464|gb|EEZ15757.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264660121|gb|EEZ30382.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
          Length = 254

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 240


>gi|260221993|emb|CBA31112.1| hypothetical protein Csp_C26920 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 233

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 2/125 (1%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              E I         YC    D   +     +       I +  + ++   A       +
Sbjct: 106 RDEEAIAALDLGCAGYCHAFSDPETLLQVHQVTMAGHVWIGQHLMQQLIQTANRAKPSRR 165

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S    W  D ELT RE E     + G ++  IA    I+  TV  +++++  K     R 
Sbjct: 166 STPGAW--DDELTAREREVAKMAAHGASNLAIAEQCDITERTVKAHLSAVFEKLGVTDRL 223

Query: 235 GAIAY 239
                
Sbjct: 224 QLALK 228


>gi|171849138|pdb|3CLO|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
           Containing A Luxr Dna Binding Domain (Np_811094.1) From
           Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A
           Resolution
 gi|171849139|pdb|3CLO|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
           Containing A Luxr Dna Binding Domain (Np_811094.1) From
           Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A
           Resolution
 gi|171849140|pdb|3CLO|C Chain C, Crystal Structure Of Putative Transcriptional Regulator
           Containing A Luxr Dna Binding Domain (Np_811094.1) From
           Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A
           Resolution
          Length = 258

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  I +G +S EIA  L IS NTVN +  +I+ K +      A   A
Sbjct: 198 LSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAA 252


>gi|118592081|ref|ZP_01549475.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
 gi|118435377|gb|EAV42024.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
          Length = 257

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             W    +LTGRE + L  +SEGK   EIA+ L IS  TV +++ ++ +K+   +R+  +
Sbjct: 188 AAWAARHQLTGREQDVLCLVSEGKRDREIALDLNISVTTVRSHLKAVFQKSGVTSRAELL 247

Query: 238 A 238
           A
Sbjct: 248 A 248


>gi|73537667|ref|YP_298034.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
 gi|72121004|gb|AAZ63190.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
          Length = 1336

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L+ RE E L  +++  ++ +IA +L +S  TV  ++ +I  K     R  A A 
Sbjct: 1268 LSEREREILGLLAQAMSNKKIASVLNVSPETVKWHLKNIYAKLGVNGRGRAAAR 1321


>gi|225626731|ref|ZP_03784770.1| Monoamine regulon transcriptional regulator [Brucella ceti str.
           Cudo]
 gi|237814663|ref|ZP_04593661.1| Monoamine regulon transcriptional regulator [Brucella abortus str.
           2308 A]
 gi|225618388|gb|EEH15431.1| Monoamine regulon transcriptional regulator [Brucella ceti str.
           Cudo]
 gi|237789500|gb|EEP63710.1| Monoamine regulon transcriptional regulator [Brucella abortus str.
           2308 A]
          Length = 257

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 192 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 243


>gi|289424205|ref|ZP_06425988.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289426652|ref|ZP_06428381.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129970|ref|YP_003580633.1| putative Two-component system response regulator [Propionibacterium
           acnes SK137]
 gi|289154902|gb|EFD03584.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289160147|gb|EFD08322.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291375832|gb|ADD99686.1| putative Two-component system response regulator [Propionibacterium
           acnes SK137]
 gi|313765489|gb|EFS36853.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772962|gb|EFS38928.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793016|gb|EFS41083.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802535|gb|EFS43757.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806550|gb|EFS45057.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811098|gb|EFS48812.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814401|gb|EFS52115.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815108|gb|EFS52822.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817418|gb|EFS55132.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821840|gb|EFS59554.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824266|gb|EFS61980.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826630|gb|EFS64344.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828631|gb|EFS66345.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831864|gb|EFS69578.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834594|gb|EFS72308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314917145|gb|EFS80976.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921419|gb|EFS85250.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926746|gb|EFS90577.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931258|gb|EFS95089.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314954919|gb|EFS99325.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958851|gb|EFT02953.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961142|gb|EFT05243.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964432|gb|EFT08532.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969529|gb|EFT13627.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974595|gb|EFT18690.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977213|gb|EFT21308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314980470|gb|EFT24564.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985689|gb|EFT29781.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987215|gb|EFT31306.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314988893|gb|EFT32984.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078555|gb|EFT50586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082523|gb|EFT54499.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086234|gb|EFT58210.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315087817|gb|EFT59793.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315097430|gb|EFT69406.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099881|gb|EFT71857.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101810|gb|EFT73786.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110233|gb|EFT82209.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331484|gb|EGE73223.1| DNA-binding response regulator [Propionibacterium acnes HL096PA2]
 gi|327333470|gb|EGE75190.1| DNA-binding response regulator [Propionibacterium acnes HL096PA3]
 gi|327445507|gb|EGE92161.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447125|gb|EGE93779.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449840|gb|EGE96494.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454686|gb|EGF01341.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456761|gb|EGF03416.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327456969|gb|EGF03624.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328756522|gb|EGF70138.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328758750|gb|EGF72366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328761756|gb|EGF75270.1| DNA-binding response regulator [Propionibacterium acnes HL099PA1]
 gi|332674812|gb|AEE71628.1| two-component system response regulator [Propionibacterium acnes
           266]
          Length = 206

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R  
Sbjct: 145 PLSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204


>gi|149923618|ref|ZP_01912016.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149815532|gb|EDM75067.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 191

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               ++ +LT RE + L ++  G+ +++I   L ISR TV  ++ +I  KT T  R   +
Sbjct: 62  TRLAQNHKLTDREQDILEFVLRGRNNEQIGRELSISRATVKWHMHNIFAKTNTGNREALL 121

Query: 238 AYAVRNN 244
             A++  
Sbjct: 122 RLALQLG 128


>gi|2808667|emb|CAA11378.1| flhR [Paracoccus denitrificans PD1222]
          Length = 236

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +   LT ++++ L  I +GK + EI+  L I+  TV  +I +IM K   + R+ A+  A
Sbjct: 169 RFATLTPQQMKILRLICQGKANKEISYELSIAEATVKTHITAIMFKINARRRTQAVLLA 227


>gi|254713235|ref|ZP_05175046.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M644/93/1]
 gi|254716411|ref|ZP_05178222.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M13/05/1]
          Length = 245

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|254464296|ref|ZP_05077707.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium
           Y4I]
 gi|206685204|gb|EDZ45686.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium
           Y4I]
          Length = 251

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT R+ E L W+ +GKT+ +IA+++G++  T+  ++       A +T + A+  A  +N
Sbjct: 186 LTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLAVETTAQAVLKAALHN 244


>gi|190575788|ref|YP_001973633.1| putative nitrate/nitrite response regulator protein NarL
           [Stenotrophomonas maltophilia K279a]
 gi|190013710|emb|CAQ47345.1| putative nitrate/nitrite response regulator protein NarL
           [Stenotrophomonas maltophilia K279a]
          Length = 216

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    + +L   LW   +     A   ++  +   +  +LT ++   L  +++G  + +I
Sbjct: 114 IGEAVQAVLDGGLWFPAM----AAERSEADALLASRLAQLTPQQFRVLLCLADGLLNKQI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           A  LG++ NTV  ++ +I++K    +R+ A  
Sbjct: 170 AYTLGLAENTVKVHVTAILKKLECHSRTQAAV 201


>gi|188584600|ref|YP_001928045.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179348098|gb|ACB83510.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 774

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 74/245 (30%), Gaps = 18/245 (7%)

Query: 17  EQRTSFVSHLPTRS--DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           E R    S    R   D    +   +  +     + A  +  G +   +   D   E + 
Sbjct: 526 EYRILRPSDGIVRRIRDTFFPIRGEEGGIRHVGGIAA--DVTGRTGTRIYVVDRDAESRQ 583

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
             +         V+               +P  +   +    P+ +T    +     +L 
Sbjct: 584 KLLALLHPAGYEVQLFESPAALAEVAESLQPGCVILDLEAAEPDGLTVARALKVGRLALP 643

Query: 135 -FDVARIRIGLMLLFPKGRIILRDRLWEI----GLLAAYQA---------NMFKSYDVHW 180
              V R    +       +    D L +      LL A  A            ++ D   
Sbjct: 644 VLVVGRSHGDVGFGVRAMKAGAVDYLEKPWQPSALLTAVSAALAELRTDNERSQARDDAK 703

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   L+ RE E L  +  G T+  I   LG+S  TV  + A +M     +T   A+  A
Sbjct: 704 QRIGALSAREREVLEGLLAGGTNKSIGRALGLSPRTVEIHRAHVMETLGVRTLPEAVLMA 763

Query: 241 VRNNI 245
            +  +
Sbjct: 764 AKAGV 768


>gi|89902528|ref|YP_524999.1| LuxR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347265|gb|ABD71468.1| transcriptional regulator, LuxR family [Rhodoferax ferrireducens
           T118]
          Length = 231

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           AA +A +  +          L+ RE +    +S G+++ E+A ++ IS  TV  ++ ++ 
Sbjct: 141 AAAKAQVPVTASSSTNAWSTLSAREAQVARSVSAGRSNKEVASLMFISERTVKAHLGAVF 200

Query: 226 RKTATKTRSGAI 237
            K   + R   +
Sbjct: 201 EKLGVRDRLQLV 212


>gi|77463889|ref|YP_353393.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|332558762|ref|ZP_08413084.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77388307|gb|ABA79492.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
 gi|332276474|gb|EGJ21789.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 213

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L A +  +    +     D  LT R+      +  GK++  IA  L +  +TV  +I 
Sbjct: 124 ASLTALRGALPDRAEPQIAVDEHLTERQRAVCDALRRGKSNKIIAGELNLCESTVKVHIR 183

Query: 223 SIMRKTATKTRSGAI 237
           +IM+K   K R+ A 
Sbjct: 184 NIMKKLGAKNRTEAA 198


>gi|326771785|ref|ZP_08231070.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
 gi|326637918|gb|EGE38819.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
          Length = 203

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 22/162 (13%)

Query: 89  CMALSEKDKYYNVLQR------PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + +  +D      +          L    F                +         +  
Sbjct: 56  DIDMPGRDGLAATAEVVGSDLPCRCLIVTTFGRPGYLSRGMEAGAAGFIVKDTPPEALAE 115

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R+I  +   E  LL                    LT RE E L   + G  
Sbjct: 116 AIRKVHAGLRVIDPELAQESVLLG----------------PNPLTEREKEVLLAAATGAD 159

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + EIA  L +   TV NY++S + KT  + R+ A   A  N 
Sbjct: 160 AREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201


>gi|260567168|ref|ZP_05837638.1| LOW QUALITY PROTEIN: bacterial regulatory protein [Brucella suis
           bv. 4 str. 40]
 gi|261756088|ref|ZP_05999797.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Brucella suis bv. 3 str. 686]
 gi|260156686|gb|EEW91766.1| LOW QUALITY PROTEIN: bacterial regulatory protein [Brucella suis
           bv. 4 str. 40]
 gi|261745841|gb|EEY33767.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Brucella suis bv. 3 str. 686]
          Length = 222

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 157 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 208


>gi|317054305|ref|YP_004118330.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
 gi|316952300|gb|ADU71774.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
          Length = 900

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 167 AYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            + + +    DV    +   LT RE + L  I  G ++++IA  L I+  T+  +I ++ 
Sbjct: 816 GFVSRLLNHPDVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELDIAATTIKTHIRNLY 875

Query: 226 RKTATKTRSGAIAYA 240
           +K     RS A+  A
Sbjct: 876 QKLGVSHRSQAVNQA 890


>gi|171915297|ref|ZP_02930767.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 229

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 13/133 (9%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L           ++          I  G+      G  + ++      L+ ++Q  
Sbjct: 108 VFAALRAGAHGYLLKGSK-------PGEILAGIRAASEGGAPLSQE--ISRLLIQSFQ-- 156

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +   V       LT RE + L  +++G    E+A  L +S  TV +Y+  + +K   +
Sbjct: 157 --EPPKVEKRTIPGLTPREAQILERLAQGMAPKEVAYDLSLSYETVRDYLKGVYQKLHVR 214

Query: 232 TRSGAIAYAVRNN 244
           +R+ A+   + +N
Sbjct: 215 SRTEAVIKYLHHN 227


>gi|85373778|ref|YP_457840.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594]
 gi|84786861|gb|ABC63043.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594]
          Length = 225

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ R++E  T ++ G  + E+A  LG+S  TV  +   +M K   KT +  +  AV   I
Sbjct: 166 LSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVMEKLNLKTSADLVRIAVEAGI 225


>gi|148545863|ref|YP_001265965.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148509921|gb|ABQ76781.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
          Length = 258

 Score = 73.5 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 10/173 (5%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           + L  I  S   F+ +     +EK      +    E F   +    +     AG+  +  
Sbjct: 72  RALKEINGSQRTFEAIMLTGRAEKQDLIRAI---REGFADYYQKPMDLDELLAGVRRQEA 128

Query: 132 SLTFDVARIR-IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------DF 184
           +L      +R +G +    +      D L++    A  Q    ++ D    +        
Sbjct: 129 ALLERQRNLRDLGGLNQRLQELAESVDELYQDLEKARGQGTHRRASDAEESESELPAAFE 188

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +L+ R++E    +S+GKT+ +IA  LGI+ NTV  Y++ ++R T    R+   
Sbjct: 189 KLSPRQLEVARLVSKGKTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLA 241


>gi|307823586|ref|ZP_07653815.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
 gi|307735571|gb|EFO06419.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
          Length = 297

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 14/174 (8%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-AGMDNRYC 131
            LD ++  ++  ++++ +              PT++         ENI        + Y 
Sbjct: 52  LLDMMMPKNYGIEVIKEIKKRWL---------PTKILIFTLKDTEENICAAFRAGADGYI 102

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                ++ + + +  +      +  + L +I  +  Y        D +    + LT RE 
Sbjct: 103 LKGTTLSELIVAIKSILAGQYYVCPEILPQI--INGYLKVEKSCLDNNLN--WNLTSREA 158

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  I+ G  + EIA  L IS  TV  + A++MRK      +  ++ A +  +
Sbjct: 159 QLLKLIAAGYKNKEIADSLCISLKTVETHRATLMRKFNAHNVATLLSVANQAGV 212


>gi|307565264|ref|ZP_07627757.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
 gi|307345933|gb|EFN91277.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
          Length = 214

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT  E E L  I++G T+ EIA     S +T+N +  +I RK +  T   A  YA+
Sbjct: 143 EQKRLTKTETEILIDIAQGLTTKEIANKRYSSFHTINTHRKNIFRKLSVNTAHEATRYAL 202

Query: 242 RNNIV 246
           R  ++
Sbjct: 203 RAGLL 207


>gi|297196139|ref|ZP_06913537.1| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297153089|gb|EDY63356.2| LuxR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 897

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+GRE + L  ++   +++EIA  L +S NTV  ++ S+ RK A   R+ A+  A    
Sbjct: 836 KLSGRERDVLERLARMMSTEEIAADLYVSVNTVKTHLKSVYRKLAVSRRNEAVRRARELG 895

Query: 245 IV 246
           +V
Sbjct: 896 LV 897


>gi|326800600|ref|YP_004318419.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551364|gb|ADZ79749.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 209

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I+   ++ EIA  L +S  TV ++  S+ +K   KT +G I  A   
Sbjct: 147 VKLTSREQEILALIANEYSNQEIADKLFLSIRTVESHRHSLNQKLNVKTMAGLIKEAYLR 206

Query: 244 NIV 246
            ++
Sbjct: 207 GLI 209


>gi|308231817|ref|ZP_07413875.2| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu001]
 gi|308369777|ref|ZP_07419024.2| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu002]
 gi|308215965|gb|EFO75364.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu001]
 gi|308326515|gb|EFP15366.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu002]
          Length = 998

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 939 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 996


>gi|307292976|ref|ZP_07572822.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306881042|gb|EFN12258.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 204

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +  ++L         LA  +    ++ D    +   L+GRE + L  ++ G  +  IA  
Sbjct: 108 EKAVLLAAIESAFERLADVEGRATRAADATI-RIAALSGREQDVLKGLARGLPNKTIAYD 166

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LGIS  TV  + A++M K   ++ S A+  A    I
Sbjct: 167 LGISPRTVEVHRANLMTKLGVRSLSEALRIAFSAGI 202


>gi|302038204|ref|YP_003798526.1| hypothetical protein NIDE2901 [Candidatus Nitrospira defluvii]
 gi|300606268|emb|CBK42601.1| protein of unknown function, putative Transcriptional regulator
           [Candidatus Nitrospira defluvii]
          Length = 203

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEI 206
            P    I   RL    ++   +    +  +    K+ F+LT RE   +  +++G T+ EI
Sbjct: 111 LPDRGGIQHARL----VVTLEELGRRQQLNTDQAKERFQLTNREQSVVENLAKGWTNKEI 166

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           A  L I+  TV  +I  IMRKT + TR+G +    R
Sbjct: 167 ANALKITEQTVKEHIKHIMRKTNSTTRTGVLVQVFR 202


>gi|294140574|ref|YP_003556552.1| LuxR family DNA-binding response regulator [Shewanella violacea
           DSS12]
 gi|293327043|dbj|BAJ01774.1| DNA-binding response regulator, LuxR family [Shewanella violacea
           DSS12]
          Length = 219

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 5/170 (2%)

Query: 71  EQKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDN 128
           +     + +    +DLV   + +     Y  ++  R      PV                
Sbjct: 41  DALQSLLENKQQAYDLVMLDLQMPGSHGYSTLIHLRTHFADLPVIVISAHEDNMTISRAV 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y S  F      +  +       +     L +   +   Q +      +   K  +LT 
Sbjct: 101 HYGSSGFIPKSSSMETLAAALASVLYGDIWLPDHAEIQEIQEDATA---LVARKLADLTP 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 158 QQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|302868096|ref|YP_003836733.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|302570955|gb|ADL47157.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
          Length = 905

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 34/61 (55%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V  G +  LTG+++     ++EG T+ EIA  + +S  TV++++ ++  +   ++R+   
Sbjct: 842 VRHGPEQLLTGQQLHIARLVAEGATNREIATRMCLSTRTVDHHLRNVFHRLGVRSRTELA 901

Query: 238 A 238
            
Sbjct: 902 R 902


>gi|261218196|ref|ZP_05932477.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320956|ref|ZP_05960153.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923285|gb|EEX89853.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293646|gb|EEX97142.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 254

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 240


>gi|238752346|ref|ZP_04613824.1| hypothetical protein yrohd0001_8030 [Yersinia rohdei ATCC 43380]
 gi|238709387|gb|EEQ01627.1| hypothetical protein yrohd0001_8030 [Yersinia rohdei ATCC 43380]
          Length = 210

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 15/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  ++  + L   D    ++Q       P    L       A  +  Y S T       +
Sbjct: 49  PHLVIIDLGLPGMDGLDVIIQLLR--RWPTMKIL----ALTARHEEHYASKTLS--HGAL 100

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW------GKDFELTGREVECLTW 196
           G + L    + IL   +  + +  +Y      S  V+        K   LT RE + L  
Sbjct: 101 GYV-LKKSPQQILMAAIQTVSVGKSYIDPALNSDLVNKLAKGTDDKQPVLTPRERQILKL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EG  +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 160 ITEGSCNRIIAEQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|92118486|ref|YP_578215.1| two component LuxR family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91801380|gb|ABE63755.1| two component transcriptional regulator, LuxR family [Nitrobacter
           hamburgensis X14]
          Length = 263

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 45/128 (35%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                        +    +  + +G  +  P       D   E    AA           
Sbjct: 101 GAAGYLVSTMSCDAFVKSIELVMMGETVFPPAFLASSPDTKSEPRRKAAVSGEDAILVAR 160

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +L+ RE+  L  +  G ++  IA  + I+  TV  ++ +I+RK   + R+ A  
Sbjct: 161 EDATAPQLSPRELAILRCLISGNSNKCIARKIDIAEATVKVHVKAILRKIRAQNRTQAAI 220

Query: 239 YAVRNNIV 246
           + + + ++
Sbjct: 221 WGMNHPLL 228


>gi|293397213|ref|ZP_06641487.1| LuxR family two component transcriptional regulator [Serratia
           odorifera DSM 4582]
 gi|291420684|gb|EFE93939.1| LuxR family two component transcriptional regulator [Serratia
           odorifera DSM 4582]
          Length = 201

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 35/66 (53%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             + +       +LT +E++ L  +S+G ++ +IA +L IS  TV+ +  +I+RKT    
Sbjct: 129 LPTDETAATDSPQLTPKELQVLGLLSKGLSNLQIAAMLNISNKTVSTHKKNILRKTGASN 188

Query: 233 RSGAIA 238
               +A
Sbjct: 189 LLELVA 194


>gi|269796683|ref|YP_003316138.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269098868|gb|ACZ23304.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 853

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 28/196 (14%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +  +L  + +    V S     +   M   +         R  EL   +F          
Sbjct: 667 IFAELIDDARARGYVLSADVAQMASLMIHFDPTGAELFRDRAEELGGSLF---------T 717

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKG-------RIILRDRL-WEIGLL---AAYQANM 172
           A +D R  +   D  R+     LL             +L  RL  E G L   A  +A+ 
Sbjct: 718 AYLDARAAAHDRDPVRVEAAARLLHEHDSGNEALTFFMLASRLFREAGDLDGSARARASA 777

Query: 173 FKSYD--------VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
               D        +   ++ + T RE E +  ++ G++++EIA  L +   TV +++ +I
Sbjct: 778 RTVGDRLGISARSMAALEEPDFTAREREVIRLVAAGRSNNEIAAELFVGVRTVESHMRNI 837

Query: 225 MRKTATKTRSGAIAYA 240
            RK+    R     +A
Sbjct: 838 RRKSGAVGRKEIAGFA 853


>gi|118478475|ref|YP_895626.1| salavaricin two-component response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|196043050|ref|ZP_03110289.1| salavaricin two-component response regulator [Bacillus cereus
           03BB108]
 gi|225865118|ref|YP_002750496.1| salavaricin two-component response regulator [Bacillus cereus
           03BB102]
 gi|118417700|gb|ABK86119.1| salavaricin two-component response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|196026534|gb|EDX65202.1| salavaricin two-component response regulator [Bacillus cereus
           03BB108]
 gi|225790282|gb|ACO30499.1| salavaricin two-component response regulator [Bacillus cereus
           03BB102]
          Length = 204

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  +  K    +   A+   ++  
Sbjct: 139 ELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLG 198

Query: 245 IV 246
            +
Sbjct: 199 YI 200


>gi|170728910|ref|YP_001762936.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169814257|gb|ACA88841.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 198

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  G++  L+ +E + L   SEGKT+ EIA +L I+  TV NY++    K     R  A 
Sbjct: 130 MAVGENDPLSDKERKALRLASEGKTTSEIAALLFIAEGTVRNYLSEATSKLHGSNRIDAA 189

Query: 238 AYAVRNN 244
             A +  
Sbjct: 190 RIAKQKG 196


>gi|83954970|ref|ZP_00963648.1| transcriptional regulator [Sulfitobacter sp. NAS-14.1]
 gi|83840696|gb|EAP79868.1| transcriptional regulator [Sulfitobacter sp. NAS-14.1]
          Length = 249

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           PAG       L     R      L + +     RD L  +     +  +     D H   
Sbjct: 133 PAGQAISGIGLWVSETRSDREFALYWQQH----RDALRRLS----FAMDEGIRRD-HMSV 183

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE +CL++++ G    EI   L IS  T   +I     K    TR  A+A ++ 
Sbjct: 184 LVNLTPRERDCLSYLAIGLRPAEICWTLKISEKTFEKHIKGAKEKLRASTRDHAVAKSLV 243

Query: 243 NNIV 246
             ++
Sbjct: 244 LGLI 247


>gi|289643884|ref|ZP_06475989.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289506324|gb|EFD27318.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 292

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +R  +L     +  +   LL  +G   L   + +             +          LT
Sbjct: 168 DRGAALAVHTGQTVLLPFLLLGRGLAWLPTAMGQRPRPTT---PHQPADGPAHPLLASLT 224

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE E       G+ + EIA  L +S  TV  ++  I RK    +R+       +  
Sbjct: 225 DREREIAYVAGTGRKNKEIADELNLSPRTVELHLTRIYRKLGIPSRAALARLMSQLG 281


>gi|239993792|ref|ZP_04714316.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           macleodii ATCC 27126]
          Length = 222

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            A  AN     D    +  +LT  +++ L  +S+G  + +IA  L IS +TV  ++++++
Sbjct: 141 TASNANGHSGQDDFTNRLKQLTPHQLKVLRMVSDGLLNKQIAYELAISESTVKQHVSAVL 200

Query: 226 RKTATKTRSGAIAYAVRN 243
           RK     R+ A   A +N
Sbjct: 201 RKLGVINRTKA-GIAFKN 217


>gi|29833873|ref|NP_828507.1| LuxR family transcriptional regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610998|dbj|BAC75042.1| putative LuxR-family transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 900

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GRE E L  ++E  +++EIA  L +S NTV  ++ S+ RK A   R  A+  A    
Sbjct: 839 ELSGREREVLQRLAEMMSTEEIAADLYVSVNTVKTHLKSVYRKLAVNRRHDAVRRARELR 898

Query: 245 IV 246
           ++
Sbjct: 899 LL 900


>gi|333024907|ref|ZP_08452971.1| hypothetical protein STTU_2411 [Streptomyces sp. Tu6071]
 gi|332744759|gb|EGJ75200.1| hypothetical protein STTU_2411 [Streptomyces sp. Tu6071]
          Length = 783

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E    ++EG ++ EIA  L IS+ T + ++  I+ K    +R
Sbjct: 726 LTRREREVAGLVAEGLSNREIAERLVISKRTADAHVEHILAKLGVGSR 773


>gi|294102876|ref|YP_003554734.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617856|gb|ADE58010.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 229

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  +++G  + EIA  L ISR TV  + A  M K    + +    +A R  
Sbjct: 154 LTPREKEILLLLAQGFATKEIASQLSISRKTVETHKARTMEKLGLYSVAELARFAEREG 212


>gi|271966008|ref|YP_003340204.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270509183|gb|ACZ87461.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 963

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE E     + G T+ EI   L +S  TV  ++ +++RK   ++R+  
Sbjct: 902 LSPREREIAEMAAAGLTNREIGQQLFVSPRTVEKHLGAVLRKLGLRSRAAL 952


>gi|229002577|ref|ZP_04160624.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
 gi|229003799|ref|ZP_04161608.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228757400|gb|EEM06636.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228758504|gb|EEM07644.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
          Length = 201

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 36/78 (46%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                ++          L+ RE E L ++ +G +  EIA  L IS  TV+ +   ++ K 
Sbjct: 121 MLKRLQNETESRNPYVILSPREREVLQFLVKGFSLSEIAQELTISIKTVDTHKTRMLNKL 180

Query: 229 ATKTRSGAIAYAVRNNIV 246
               +S  + YA++ N++
Sbjct: 181 NLSKKSELVQYAIKYNLI 198


>gi|146306594|ref|YP_001187059.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145574795|gb|ABP84327.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 214

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 15/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L +        D     L   +  +R G             DR     ++      
Sbjct: 91  VLEALQKGAHGYLLKDAAAFELRLALEAVRRG-------------DRYLSSAIVQPVIEQ 137

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                + H   +  LT R++E L  I+ G+++  IA  LG+S  TV  + A IM++    
Sbjct: 138 AVSKVNAHA--EHGLTQRQLEILRLITRGESTRSIANGLGLSVKTVEAHRAQIMKRLQIH 195

Query: 232 TRSGAIAYAVRNNIV 246
                + YAVR  I+
Sbjct: 196 DVPSLVLYAVREGII 210


>gi|269218562|ref|ZP_06162416.1| DNA-binding response regulator DegU [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211673|gb|EEZ78013.1| DNA-binding response regulator DegU [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 350

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            G+    +A +F+S   +   +  L+ RE E L  + +GK +  IA  L IS +TV  ++
Sbjct: 269 AGVTNQREAFVFQSIASYSNVN-GLSRREEEVLRLVLDGKDNRAIADELFISVSTVKVHV 327

Query: 222 ASIMRKTATKTR---SGA 236
            +I+ KT+   R   + A
Sbjct: 328 HNILHKTSMGNRKQLTQA 345


>gi|50841898|ref|YP_055125.1| two-component system response regulator [Propionibacterium acnes
           KPA171202]
 gi|50839500|gb|AAT82167.1| two-component system response regulator [Propionibacterium acnes
           KPA171202]
          Length = 206

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R  
Sbjct: 145 PLSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204


>gi|330468837|ref|YP_004406580.1| hypothetical protein VAB18032_24410 [Verrucosispora maris
           AB-18-032]
 gi|328811808|gb|AEB45980.1| hypothetical protein VAB18032_24410 [Verrucosispora maris
           AB-18-032]
          Length = 231

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 52/169 (30%), Gaps = 8/169 (4%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFC-PVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           W  D      ++  ++    L RP E         L        G       L    +  
Sbjct: 63  WIVDPRNPATMAWLERSLVGLNRPVERLSRARLAWLLGGWHAHCGRRADAIRLLELASSE 122

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-------DFELTGREVEC 193
                      R+ +         +A       +S  V           +  LT  E   
Sbjct: 123 YAATGAAGLLARVAVDLASVAERAVATGAPPGGRSGQVPASATGSSAPAEAALTATERRV 182

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              ++EG ++ E+A  L +S  TV  ++ +  RK   + R+  + + +R
Sbjct: 183 AAAVAEGLSNQEVAARLSVSIKTVEFHLRNAYRKLGVRKRTELVRHLLR 231


>gi|306844463|ref|ZP_07477053.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1]
 gi|306275276|gb|EFM57026.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1]
          Length = 245

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|304406993|ref|ZP_07388647.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304343980|gb|EFM09820.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 200

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W     LT RE E L + SEG ++ EIA  + ++  TV NY++  +RK   K R  AI+ 
Sbjct: 133 WEAGNPLTEREQEVLRYASEGLSAREIAARVHLTAGTVRNYMSESIRKLEAKNRIDAISI 192

Query: 240 AVRNN 244
           A    
Sbjct: 193 ATHKG 197


>gi|226362430|ref|YP_002780208.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240915|dbj|BAH51263.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 937

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           + +         LT RE +    I+EG T+  IA  L IS+ T   ++  I+ K    +R
Sbjct: 864 RPHKPPSPGSHHLTKREQQVAELIAEGLTNKAIAARLVISQRTAQGHVEHILTKLGFTSR 923

Query: 234 SGAIAYAVRNN 244
           +   A+ V   
Sbjct: 924 AQVAAWVVEER 934


>gi|167821522|ref|ZP_02453202.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
          Length = 74

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E E L  +    ++ EIA+ + +   TV  ++ ++  K    +R  A+  A+   +
Sbjct: 10  LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 69

Query: 246 V 246
           +
Sbjct: 70  L 70


>gi|167576825|ref|ZP_02369699.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 210

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 67/202 (33%), Gaps = 18/202 (8%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +D        +  L E VGA          F     D  V    P  LV  + + E   +
Sbjct: 11  VDDDSGMRTSLSWLLESVGAKSLGFASAADF-LAHFDPDV----PACLVLDVRMPESSGF 65

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-- 156
               +                 T P    + +  +   V  ++ G +    K     +  
Sbjct: 66  DVQAE-----------LNARGATLPIIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQML 114

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           +R+     LA  +    +       +   LT RE E L  + +GK S +IA  L IS  T
Sbjct: 115 ERVQRAMKLATQRHAADRRRRELRRRIDALTAREKEVLRGVVDGKGSKQIASDLSISVKT 174

Query: 217 VNNYIASIMRKTATKTRSGAIA 238
           V+ + ASI  K    + +  + 
Sbjct: 175 VDVHRASIKEKLGATSIAALVR 196


>gi|118594726|ref|ZP_01552073.1| regulatory protein, LuxR:Response regulator receiver
           [Methylophilales bacterium HTCC2181]
 gi|118440504|gb|EAV47131.1| regulatory protein, LuxR:Response regulator receiver
           [Methylophilales bacterium HTCC2181]
          Length = 212

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    +++G++++EIA  + +S  TV  ++ +I +K      +     A+R+ +
Sbjct: 150 LSDREFEVFMALAKGRSTNEIAETICLSPRTVGTHLYNIKQKLNASNSAEIALIAIRSGL 209

Query: 246 V 246
           +
Sbjct: 210 L 210


>gi|86359865|ref|YP_471756.1| conjugal transfer transcriptional regulator protein [Rhizobium etli
           CFN 42]
 gi|28453858|gb|AAO43545.1| transcriptional activator protein TraR [Rhizobium etli CFN 42]
 gi|86283967|gb|ABC93029.1| conjugal transfer transcriptional regulator protein, LuxR family
           [Rhizobium etli CFN 42]
          Length = 239

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 82/243 (33%), Gaps = 32/243 (13%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             +D L  +I         + +       GA+ F L R+   +    +    +++P D  
Sbjct: 5   RLNDALRNLIDTVEASQDEVSVKVALRNYGAA-FGLERYAYLEASGAEVRTFNNYPKDWQ 63

Query: 88  RCMALS---EKDKYYNVLQRPTELF--------------------CPVFHTLPENIT-PP 123
                      D      +R  E F                      V H L   +T   
Sbjct: 64  EAYLSGHYTRIDPVVTEAKRRQEAFGWTADNWPARGTSDLRKFREQAVDHGLRSGVTIGT 123

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
            G    +  LTF  +  R  L+ +    + +         LL  +    F +        
Sbjct: 124 DGSFGSHLMLTFATSEARTDLVEMQQTFQALQ-------ALLVVHYRLRFIAARTQLAPK 176

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+ CL W ++GKT+ E A++ GI+  TV +Y+     K   ++    +A A   
Sbjct: 177 RTLSPREMTCLLWATKGKTAPETAMLTGINARTVQHYLDKAREKFDAQSVPQLVAIAKDR 236

Query: 244 NIV 246
            ++
Sbjct: 237 GLL 239


>gi|320532002|ref|ZP_08032895.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135766|gb|EFW27821.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 203

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 16/174 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +     P  ++  + +   D      ++L+R       +  T          + +    
Sbjct: 41  PVALEHRPDVVLMDVDMPGTDGLSATASLLERLPATRVLIVTTFGRPGFLRRAVQSGA-- 98

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                      ++   P   +    R    GL          +  + +G D  LT RE E
Sbjct: 99  --------HGFVVKDAPATDLAESVRRVHAGL--RVVDPALAADSLVFG-DSPLTARETE 147

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L   ++G T  E+A  + +S  T  N+++  M KT   TR+ A+  A +   +
Sbjct: 148 VLQAAADGATVAEVARRVHLSEGTTRNHLSQAMAKTDAPTRAAAVHIAAQKGWI 201


>gi|313204159|ref|YP_004042816.1| transcriptional regulator, luxr family [Paludibacter
           propionicigenes WB4]
 gi|312443475|gb|ADQ79831.1| transcriptional regulator, LuxR family [Paludibacter
           propionicigenes WB4]
          Length = 232

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E LT I +GKT   I+  L IS  T   +  +I+ K   K  +  +A      +
Sbjct: 172 FTKREKEILTLIVKGKTDKFISEKLFISIKTAKKHRTNIIHKAGVKNTAELVALLTECGL 231


>gi|308374292|ref|ZP_07435483.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu006]
 gi|308342443|gb|EFP31294.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu006]
          Length = 1077

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 1018 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 1075


>gi|326318307|ref|YP_004235979.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375143|gb|ADX47412.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 233

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           D  LT R+ + L  + EG  +  IA  L +S +TV  ++ +I++K     R   I+ 
Sbjct: 168 DLGLTPRQGQILALVLEGLPNKPIANALHLSEHTVKEHLTAILQKLGASNRVELISR 224


>gi|260072623|gb|ACX30521.1| two-component system nitrate/nitrite response regulator [uncultured
           SUP05 cluster bacterium]
 gi|269468662|gb|EEZ80302.1| two component LuxR family transcriptional regulator [uncultured
           SUP05 cluster bacterium]
          Length = 209

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     D   +   L  +     ++ +D      +LA    N     +  +     LT 
Sbjct: 97  GYLLKDMDPDELVDALNEVSKGSIVVAQDM---THVLAKVLRNELTDSEPSFD---SLTN 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E    ++ G ++  IA  LGIS  TV  ++ SI++K +  +R           
Sbjct: 151 REKEVSCQVAIGHSNKVIARELGISDGTVKLHVKSILKKLSLSSRVEVAVMVTEKG 206


>gi|227536211|ref|ZP_03966260.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244108|gb|EEI94123.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 216

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 18/178 (10%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +++   P  L+  + +   D          E      H     I           +L  
Sbjct: 48  HVLNKQQPDLLILDLNMPGMDG---------ETIAVKVHEQYPCIKILVLSMYSSPALRR 98

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI--------GLLAAYQANMFKSYDVHWGKDFELT 187
            +  I +   L       +L D + EI         +    + N F S DV + K ++LT
Sbjct: 99  KLKEIGVHGYLPKDTSTKLLFDTIREICNGKPCFGSVSNNNEENKFLSSDV-FLKKYKLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  I +  TS +IA  L IS  TV+ +  +++ K     ++G   +A+ +N+
Sbjct: 158 SRELEILRLIGQNFTSQQIAEKLFISMFTVDTHRKNMIYKLKVDKKNGLFQFAMSHNL 215


>gi|162146990|ref|YP_001601451.1| two-component system regulatory protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544054|ref|YP_002276283.1| two component LuxR family transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785567|emb|CAP55138.1| putative two-component system regulatory protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531731|gb|ACI51668.1| two component transcriptional regulator, LuxR family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 201

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L    EG ++ +IA  LG+S  TV NY+++   K     R  A   A  N 
Sbjct: 140 PLTARERDALRLAEEGLSNKDIARRLGLSPGTVRNYLSTAAGKLNAANRIEAGRIARANG 199


>gi|26988367|ref|NP_743792.1| LuxR family two component transcriptional regulator [Pseudomonas
           putida KT2440]
 gi|148549288|ref|YP_001269390.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|24983119|gb|AAN67256.1|AE016352_9 DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|148513346|gb|ABQ80206.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
 gi|313500198|gb|ADR61564.1| LuxR family two component transcriptional regulator [Pseudomonas
           putida BIRD-1]
          Length = 216

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAA 204


>gi|309779377|ref|ZP_07674139.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
 gi|308921935|gb|EFP67570.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
          Length = 337

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A+    M         +   ++ R+ E L  +S G +   +  +LGIS  TV  +  ++ 
Sbjct: 139 ASAAMPMLSLDASEAAQRLNVSLRQYEVLVLLSRGHSVKGVGRLLGISEATVKTHACTLY 198

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           R+   + +S A+  A+R  I
Sbjct: 199 RRLNVRNKSEAVYAAMRLGI 218


>gi|260434614|ref|ZP_05788584.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
 gi|260412488|gb|EEX05784.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
          Length = 235

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           +  RIG   L    R +  D      ++A    +   S          L+ RE + L  +
Sbjct: 114 SHERIGSGGLLSVLRAMESDGSHMDPVIAGVANHDRGSRGAAHPLSDVLSLREEDVLRGL 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G ++ EIA  L +S  T  + +  ++RK   K+R+ A   A + N+V
Sbjct: 174 CKGLSNQEIADQLHLSIETTRHCVTGLLRKLDAKSRTQAALIAFQRNLV 222


>gi|212636250|ref|YP_002312775.1| LuxR family DNA-binding response regulator [Shewanella
           piezotolerans WP3]
 gi|212557734|gb|ACJ30188.1| DNA-binding response regulator, LuxR family [Shewanella
           piezotolerans WP3]
          Length = 216

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 69/184 (37%), Gaps = 11/184 (5%)

Query: 59  SHFLLVRW-DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP---TELFCPVFH 114
           +HF  V   +     +LD ++       L+  + + +   +  ++       ++   V  
Sbjct: 26  THFENVSLFEAESVAELDEVLKRHDADLLLLDLNIPKAHGFNTLVSIRNCHAQMGVVVIS 85

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
              + IT        + +  F      + +M+     + +L  + W       ++A    
Sbjct: 86  GQEDKITV--SKSMSFGAAGFIPKSTAVEVMV--TAIKSVLAGQQWVPAGCNNFEAI--- 138

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D    K   L+ R+   L   ++G  + +IA  LG+S  T+  + ++I  K    TR+
Sbjct: 139 EADSMTSKIVSLSPRQHSILMMFADGLLNKQIAYELGLSEATIKAHASAIFLKLGVHTRT 198

Query: 235 GAIA 238
            A+ 
Sbjct: 199 QAVI 202


>gi|297189985|ref|ZP_06907383.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718642|gb|EDY62550.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 380

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE+E +  ++ G T+  IA  L ++ +T   ++A I+RK   + R+ A+   +R
Sbjct: 319 LSRREIEVMELLAGGATNRVIAARLVVAESTAKAHVAQILRKLEARNRAEAVTKYLR 375


>gi|170723185|ref|YP_001750873.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169761188|gb|ACA74504.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 216

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAA 204


>gi|77165178|ref|YP_343703.1| two component LuxR family transcriptional regulator [Nitrosococcus
           oceani ATCC 19707]
 gi|254433476|ref|ZP_05046984.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|76883492|gb|ABA58173.1| two component transcriptional regulator, LuxR family [Nitrosococcus
           oceani ATCC 19707]
 gi|207089809|gb|EDZ67080.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 201

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F S      +   LT RE +    +++GK +  IA  L IS  TV  + A+IM K   +
Sbjct: 128 QFHSQPEKLAQLESLTRRERQVFKLLAQGKMNKHIAAELCISIRTVETHRANIMEKLKVR 187

Query: 232 TRSGAIAYAV 241
           + +  +  A+
Sbjct: 188 SLADIVRLAI 197


>gi|328755742|gb|EGF69358.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
          Length = 206

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R  
Sbjct: 145 PLSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204


>gi|325689072|gb|EGD31080.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
          Length = 199

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLDAENRTEAVRIGQEKG 197


>gi|318080392|ref|ZP_07987724.1| protein kinase/LuxR family transcriptional regulator [Streptomyces
           sp. SA3_actF]
          Length = 588

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E    ++EG ++ EIA  L IS+ T + ++  I+ K    +R
Sbjct: 531 LTRREREVAGLVAEGLSNREIAERLVISKRTADAHVEHILAKLGVGSR 578


>gi|318057750|ref|ZP_07976473.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 229

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 6/161 (3%)

Query: 83  PFDLVRCMALSEKDK---YYNVLQRPTELFCPV---FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + +   D       + +RP      V   FH   + +         +      
Sbjct: 52  PAVVLMDLRMPGTDGLTATARIRERPEAPEVLVLTTFHADEQVLRALRAGAAGFLLKDTP 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +  +     ++       +    A   +     D    +   L  RE E    
Sbjct: 112 PAEIAAAVREVARGRPVLSPLVTRRLIAQVAGGESPHARRDRARARLASLAEREREVALA 171

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  G ++ EIA  L +S  TV  +++ ++ K     R    
Sbjct: 172 VGRGASNAEIAAELYLSVPTVKAHVSRVLAKLHLNNRVQIA 212


>gi|318056765|ref|ZP_07975488.1| protein kinase/LuxR family transcriptional regulator [Streptomyces
           sp. SA3_actG]
          Length = 783

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E    ++EG ++ EIA  L IS+ T + ++  I+ K    +R
Sbjct: 726 LTRREREVAGLVAEGLSNREIAERLVISKRTADAHVEHILAKLGVGSR 773


>gi|302545866|ref|ZP_07298208.1| two-component system response regulator TcsR2 [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463484|gb|EFL26577.1| two-component system response regulator TcsR2 [Streptomyces
           himastatinicus ATCC 53653]
          Length = 208

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 3/160 (1%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELF-CPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           S  P   V        DK     +    +   P   + PE+         R   L     
Sbjct: 43  SLQPHVCVVDTDCPGSDKAARKGELGKLMAEAPAAESGPESGLLVLANAGRPGQLRRAHK 102

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
              +G +      + +L D +  +     +  +    Y      +  LT RE+  L+  +
Sbjct: 103 ARALGYIDKNAPPQRLL-DGIRHVAKQERFIDDSL-GYGFLKAAEIPLTERELGVLSLAA 160

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +G +  EIA  L +S  T+ NY+A+I RKT  + R  AI 
Sbjct: 161 DGASIAEIARTLHLSNGTIRNYLAAITRKTGARNRVDAIR 200


>gi|297624739|ref|YP_003706173.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297165919|gb|ADI15630.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 199

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L  ++EG  +  IA  LG++  TV  + +S++ K   + R  A  YA    +
Sbjct: 132 EVLGLLAEGLVNKAIAARLGVAEKTVKTHASSVLSKLGWRDRVQAALYARSRRL 185


>gi|326778684|ref|ZP_08237949.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
 gi|326659017|gb|EGE43863.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
          Length = 400

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTW 196
           AR+R             LR+    +G  A        S  V    D +ELT RE E   +
Sbjct: 254 ARVRNRAGRWLVCHASCLREAGGRLGASAVVIEPAKTSEIVPLIVDAYELTDRETEVTQF 313

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           I+ G  + EIA  L +S +TV ++I ++  K    +R   +  
Sbjct: 314 IARGLPTGEIAAQLRLSPHTVRDHIKAVFEKVGVSSRGELVGK 356


>gi|256829663|ref|YP_003158391.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578839|gb|ACU89975.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 219

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            LT RE++ +  I +GK S EIA IL IS  TV+ + ++I++K    T
Sbjct: 154 NLTPREIDVVKLIFKGKKSREIAEILAISVKTVDKHRSNILQKIGIHT 201


>gi|227494681|ref|ZP_03924997.1| response regulator DegU family protein [Actinomyces coleocanis DSM
           15436]
 gi|226831863|gb|EEH64246.1| response regulator DegU family protein [Actinomyces coleocanis DSM
           15436]
          Length = 216

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +    H     +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   +
Sbjct: 138 VTRRKADHGDPTADLTPAERKVLNLIGDGLSNREIGEKLGVAEKTVKNHITSLLAKMGLQ 197

Query: 232 TRSGAIAY 239
            R+   A+
Sbjct: 198 RRTQVAAW 205


>gi|226359536|ref|YP_002777314.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226238021|dbj|BAH48369.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 772

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 1/105 (0%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECL 194
            +AR+R+ L        +     L     +A        + D    G   +LT RE +  
Sbjct: 660 SLARVRLVLGERAFSKAVEHGRGLTLREAVAYALGENTAADDPSRSGPSKDLTPRERQVA 719

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +++G T+  IA  L IS+ T   ++  ++ K    +R+   A+
Sbjct: 720 DLVAQGLTNRAIADKLVISQRTAQGHVEHVLAKLGFGSRAQIAAW 764


>gi|226304156|ref|YP_002764114.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226183271|dbj|BAH31375.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 872

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   V H+        +   +R CS+      +R    +       +    + +   LA 
Sbjct: 734 LVQAVAHSELGEPRLASQEWSRACSIADQTGLLRPFATIGSADVEKLESMAVTKSRALAE 793

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +  +          +  ELT RE + L+ ++ G  S  +A  L +S NTV   + ++ +K
Sbjct: 794 FSKSAPAESFPGSVRIVELTEREQKVLSLLALGMGSAAMADKLYVSVNTVKTQLRTLYKK 853

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R+ AI  A +  ++
Sbjct: 854 LDAHNRNEAITKARQLRLL 872


>gi|317488004|ref|ZP_07946586.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|316912906|gb|EFV34433.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 487

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            K+F L+GRE E L  I+ G T++ +A  L IS  TVN ++  I  K     RS  + Y
Sbjct: 421 AKEFSLSGREAEILVLIARGYTTNNMAEKLVISPYTVNTHVRHIYEKMQIHKRSELLNY 479


>gi|300784159|ref|YP_003764450.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793673|gb|ADJ44048.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 215

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S + H G    L+ RE + L  ++ G+   ++A IL IS  TV +Y+  I  KT  + R+
Sbjct: 143 SEERHAGPKIVLSEREKQVLRLVAAGERDVDVAEILNISVRTVRSYLDRIRDKTGERRRA 202

Query: 235 GAIAYAVRNNIV 246
           G +  A+R  ++
Sbjct: 203 GFVRVAIREGLL 214


>gi|284041859|ref|YP_003392199.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946080|gb|ADB48824.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 916

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ELT RE      ++ G T+ E A  L +S  TV +++    RK   ++R+   
Sbjct: 857 ELTAREQAVCELVAGGATNREAATALFLSPRTVEHHLRQAYRKLGVRSRTELA 909


>gi|13990973|dbj|BAB47256.1| LuxR family quorum-sensing transcription factor [Agrobacterium
           tumefaciens]
          Length = 269

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 163 GLLA-AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            +LA  Y+  M  +  +   K   L+ RE  CL W ++GKT+ E A++ GI+  TV +Y+
Sbjct: 186 AVLAIHYRLKMLAATTIVPPKRL-LSPREAMCLKWAAKGKTAPETAILTGINPRTVQHYL 244

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
                K    T    +A A  + ++
Sbjct: 245 DKAREKLEAATVPHLVAIAKDHGLL 269


>gi|221197308|ref|ZP_03570355.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2M]
 gi|221203981|ref|ZP_03576999.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2]
 gi|221176147|gb|EEE08576.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2]
 gi|221183862|gb|EEE16262.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2M]
          Length = 210

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 15/161 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           + P  LV  + + EK  +    +        PV         P              V  
Sbjct: 48  NLPACLVLDVRMPEKSGFDVQAELNARGATLPVIFVSGHGDIP------------MSVRA 95

Query: 140 IRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           ++ G +    K     +  +R+     LA  +    + +     +   LT RE E L  +
Sbjct: 96  LQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHAADRRHRELRERLAALTAREKEVLRGV 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK S +IA  L IS  TV+ + ASI  K    + +  + 
Sbjct: 156 VDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAALVR 196


>gi|163786051|ref|ZP_02180499.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
 gi|159877911|gb|EDP71967.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
          Length = 206

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 17/216 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R+   +   S    +  L +Y       +V      E+ LD +V    P  ++  + +
Sbjct: 1   MIRLAIAEDHQSLIDGIKLLLQYKE--GIEIVGTANNGEELLD-LVRLKQPNVIITDIRM 57

Query: 93  SEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            + D       + +    +    F    ++      +D                L+   P
Sbjct: 58  PKMDGIRATQLIKKELPHIKIIGFTMFDQSDAIQQMLDAGASG----------YLLKNSP 107

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208
              ++   R  + G          ++ D    K    LT R+VE L  IS+GKTS EIA 
Sbjct: 108 LEEVLKAIRAVDNGNTYFDSNIRVEAKDNTNKKAKGILTKRQVEILGLISQGKTSREIAD 167

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L I  +TV+ +  +++R    + +   + YA+   
Sbjct: 168 ELFIGVHTVDTHRKNMIRILGLQGKGELMRYALEKK 203


>gi|89894771|ref|YP_518258.1| hypothetical protein DSY2025 [Desulfitobacterium hafniense Y51]
 gi|89334219|dbj|BAE83814.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                D H  K   LT RE+E    +  G  S EIA  L I++ TV+ +I +I+ K   K
Sbjct: 157 RTPQQDPHDDKVASLTLRELEVFNLVVTGLRSKEIAEKLEITKRTVDFHIGNILLKLEAK 216

Query: 232 TRSGAI 237
           +R   +
Sbjct: 217 SRLEIV 222


>gi|15964305|ref|NP_384658.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307307041|ref|ZP_07586780.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|307320121|ref|ZP_07599541.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|15073482|emb|CAC45124.1| Transcriptional regulatory protein [Sinorhizobium meliloti 1021]
 gi|306894167|gb|EFN24933.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306901981|gb|EFN32580.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 215

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT ++   L+ ++EG  + +IA  LG+S  T+  ++++I+ K    +R+ A+    +   
Sbjct: 152 LTPQQSRVLSMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKLGT 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|319764745|ref|YP_004128682.1| regulatory protein luxr [Alicycliphilus denitrificans BC]
 gi|317119306|gb|ADV01795.1| regulatory protein LuxR [Alicycliphilus denitrificans BC]
          Length = 212

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 37/70 (52%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A   ++      +  +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K 
Sbjct: 132 AAERSEADAELASRLAQLTPQQFRVLLCLADGLLNKQIAAQLGLAENTVKVHVTAILKKL 191

Query: 229 ATKTRSGAIA 238
           A  +R+ A  
Sbjct: 192 ACYSRTQAAV 201


>gi|187927010|ref|YP_001893355.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|241665339|ref|YP_002983698.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728764|gb|ACD29928.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|240867366|gb|ACS65026.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 303

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A   A M         +   ++ R+ E L  +S G +   +  +LGIS  TV  +  ++ 
Sbjct: 135 ANAAAPMLALNAAEAAQRLNVSLRQYEVLVLLSRGHSVKGVGRLLGISEATVKTHACTLY 194

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           R+   + +S A+  A+R  I
Sbjct: 195 RRLNVRNKSEAVYAAMRLGI 214


>gi|15595232|ref|NP_248724.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107099028|ref|ZP_01362946.1| hypothetical protein PaerPA_01000036 [Pseudomonas aeruginosa PACS2]
 gi|116053755|ref|YP_788190.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152985987|ref|YP_001345432.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218888780|ref|YP_002437644.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254237723|ref|ZP_04931046.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719]
 gi|254243146|ref|ZP_04936468.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192]
 gi|296386510|ref|ZP_06876009.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|13959718|sp|P24908|TRPO_PSEAE RecName: Full=Putative transcriptional regulator
 gi|9945855|gb|AAG03424.1|AE004443_2 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115588976|gb|ABJ14991.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169654|gb|EAZ55165.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719]
 gi|126196524|gb|EAZ60587.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192]
 gi|150961145|gb|ABR83170.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218769003|emb|CAW24761.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 207

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 38/73 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S D        L+ RE+  L +++ G T+  IA  L +S  TV+ Y + IM K    + 
Sbjct: 135 QSRDNEARMLESLSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSL 194

Query: 234 SGAIAYAVRNNIV 246
           +G I +A R+ ++
Sbjct: 195 AGLIDFARRHELI 207


>gi|257791584|ref|YP_003182190.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257475481|gb|ACV55801.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 487

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            K+F L+GRE E L  I+ G T++ +A  L IS  TVN ++  I  K     RS  + Y
Sbjct: 421 AKEFSLSGREAEILVLIARGYTTNNMAEKLVISPYTVNTHVRHIYEKMQIHKRSELLNY 479


>gi|218675482|ref|ZP_03525151.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 213

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            T RE E L  +  G ++  IA  L +S +TV  ++  IMRK   + R+  +A  ++ 
Sbjct: 146 FTPREAEILAELQSGCSNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVARLIQR 203


>gi|207728287|ref|YP_002256681.1| hypothetical protein RSMK04653 [Ralstonia solanacearum MolK2]
 gi|206591533|emb|CAQ57145.1| hypothetical protein RSMK04653 [Ralstonia solanacearum MolK2]
          Length = 319

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   ++ R+ E L  +S G +   +  +LGIS  TV  +  ++ R+   + +S A+
Sbjct: 166 AEAAQRLNVSQRQYEVLVLLSRGHSVKGVGRLLGISEATVKTHACTLYRRLNVRNKSEAV 225

Query: 238 AYAVRNNI 245
             A+R  I
Sbjct: 226 YAAMRLGI 233


>gi|168699457|ref|ZP_02731734.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 213

 Score = 73.5 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ REVE L  ++ G ++ +IA  L +S  +V  Y    M K   ++R G + +AVR
Sbjct: 147 DHGLSEREVEVLKQLTAGYSNKQIAARLEVSVKSVETYKGRAMEKLGIRSRVGLVQFAVR 206

Query: 243 NN 244
             
Sbjct: 207 QG 208


>gi|315081981|gb|EFT53957.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
          Length = 206

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R  
Sbjct: 145 PLSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204


>gi|294629076|ref|ZP_06707636.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292832409|gb|EFF90758.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 213

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L   ++G T  +IA  L +S +TV NY+++ + KT T+ R+ A+  A +  
Sbjct: 152 PLTARECDVLNASADGATVADIASRLHLSESTVRNYLSAAIGKTGTRNRTEALREARQRG 211


>gi|226308220|ref|YP_002768180.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226187337|dbj|BAH35441.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 881

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 7/221 (3%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASH-FLLVRWDLFQEQKLDSIVSSDWPFDL 86
           +  D L     +D  ++      AL E V ASH F +V   + +      +++      L
Sbjct: 661 SLGDALLAAARIDLLLASGEGTKALEESVAASHTFAVVTVSVAR----AHLLTGAPSQAL 716

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
             C  +   ++Y     R   L             P A           + + +   L  
Sbjct: 717 ELCREIDWSEQYLT-RFRLESLLIECAALCELGRIPAAASPWEEARGLLETSGVLSALAT 775

Query: 147 LFPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +       L +R       +A +  +             +LT RE++ L  +  G    E
Sbjct: 776 ISRDLIRQLEERAEGPSSAVATFLESEVPQMYPAAIVRVQLTKREMDVLVELGLGIPIGE 835

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S NT+ +++ ++ RK    +R  A+A A R+N++
Sbjct: 836 IARKLFVSNNTLKSHLRALYRKLGAHSREEAVAAAHRHNLL 876


>gi|47564323|ref|ZP_00235368.1| DNA-binding response regulator, putative [Bacillus cereus G9241]
 gi|47558475|gb|EAL16798.1| DNA-binding response regulator, putative [Bacillus cereus G9241]
          Length = 204

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  +  K    +   A+   ++  
Sbjct: 139 ELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFNKLNVSSSLEAVTKGIKLG 198

Query: 245 IV 246
            +
Sbjct: 199 YI 200


>gi|257055940|ref|YP_003133772.1| transcriptional regulator, LuxR family [Saccharomonospora viridis
           DSM 43017]
 gi|256585812|gb|ACU96945.1| transcriptional regulator, LuxR family [Saccharomonospora viridis
           DSM 43017]
          Length = 894

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D ELT +E      ++ G ++ E+A  L +S  TV  ++  I  K   ++R+   A   R
Sbjct: 832 DTELTPQEQAVSQLVARGLSNREVAAELYVSTKTVQYHLTRIYAKLGIRSRAELAALWGR 891

Query: 243 NNI 245
             +
Sbjct: 892 AGL 894


>gi|256424881|ref|YP_003125534.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256039789|gb|ACU63333.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 207

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  ++F LT RE+E L  I++  T+ +IA  L +S  TV  +  +IM+K   K+ +    
Sbjct: 141 HSFREFNLTRRELEILHLINQQFTNQQIATHLYLSIYTVETHRKNIMQKLQLKSPAALTR 200

Query: 239 YAVRNNI 245
           + +   +
Sbjct: 201 FLLEKGL 207


>gi|268593225|ref|ZP_06127446.1| DNA-binding response regulator UhpA [Providencia rettgeri DSM 1131]
 gi|291311274|gb|EFE51727.1| DNA-binding response regulator UhpA [Providencia rettgeri DSM 1131]
          Length = 208

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L A      +          ELT RE E    +  G +   IA  L +S  TV+ + A+I
Sbjct: 125 LCADAMRALRHSPQQQQSLQELTPREREVFDLLVAGLSVKVIAEQLELSHKTVHVHRANI 184

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   +     + YA+ +N++
Sbjct: 185 LGKLQCENTIDLVHYALEHNLI 206


>gi|254525287|ref|ZP_05137342.1| transcriptional regulator LuxR/uhpA family [Stenotrophomonas sp.
           SKA14]
 gi|219722878|gb|EED41403.1| transcriptional regulator LuxR/uhpA family [Stenotrophomonas sp.
           SKA14]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    + +L   LW   +     A   ++  +   +  +LT ++   L  +++G  + +I
Sbjct: 114 IGEAVQAVLDGGLWFPAM----AAERSEADALLASRLAQLTPQQFRVLLCLADGLLNKQI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           A  LG++ NTV  ++ +I++K    +R+ A  
Sbjct: 170 AYTLGLAENTVKVHVTAILKKLECHSRTQAAV 201


>gi|209883855|ref|YP_002287712.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Oligotropha carboxidovorans OM5]
 gi|209872051|gb|ACI91847.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Oligotropha carboxidovorans OM5]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 2/106 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRI--ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            +  +   VA +R G      K     ++ +R+ E  +      +       ++     L
Sbjct: 90  GHSDVPTAVAAMRQGAFDFLEKPFAANVMAERVREAVIAYRRAVDEPIPGLGNFSGRHLL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           T RE E L  ++ G ++ E    LGIS  T+  + A IM K   + 
Sbjct: 150 TSREREVLGLVASGASNKEAGRRLGISPRTIEVHRARIMTKLGARN 195


>gi|115376820|ref|ZP_01464044.1| transcriptional regulator, LuxR family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366182|gb|EAU65193.1| transcriptional regulator, LuxR family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 419

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT R+ + LT   +GKT+ EIA+ LG  ++TV  +++ I+RK     RS
Sbjct: 361 LTARQADVLTLAVQGKTNKEIALELGCQKSTVELHMSHILRKCGADNRS 409


>gi|127514434|ref|YP_001095631.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126639729|gb|ABO25372.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 198

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  G+   L  +E   L   SEG++S EIA  L I+  TV NY++  + K     R  A 
Sbjct: 130 MAVGEQDPLNDKERRALRLASEGRSSAEIAASLFIAEGTVRNYLSEAIAKLNASNRIDAA 189

Query: 238 AYAVRNN 244
             A +  
Sbjct: 190 RIAKQKG 196


>gi|255505880|ref|ZP_05348636.3| transcriptional regulator, LuxR family [Bryantella formatexigens
           DSM 14469]
 gi|255265338|gb|EET58543.1| transcriptional regulator, LuxR family [Bryantella formatexigens
           DSM 14469]
          Length = 730

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +     +  L  + ++ L   +EG ++  IA  +G+  NTV  +     RK    TR+ A
Sbjct: 661 EQGTDAEVRLPEQALKVLRMQAEGLSTRAIAERMGVKENTVKYHNKETYRKLGVNTRTAA 720

Query: 237 IAYAVRNNIV 246
           +  A +  ++
Sbjct: 721 VNEARKRKLI 730


>gi|182436743|ref|YP_001824462.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178465259|dbj|BAG19779.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 234

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 20/222 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE--QKLDSI 77
               + + +R   + R++  D +V     +  +       H ++   +   E    +D +
Sbjct: 1   MINGNRMSSRGGFM-RIVLADDSVLIRAGIREILT--SHDHDVIRECEDADELVAVVDEL 57

Query: 78  VSS-DWPFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPENITPPAGMDNRYCS 132
           V S D P  ++  + +  K+    +      R      PV         P          
Sbjct: 58  VRSGDAPDMVITDVRMPPKNTDDGLRAAIDLRSRHRDLPVLVLSAYVTGPYV-----REL 112

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFKSYDVHWGKDFELT 187
           L+   A   +G +L    GR+    R  E       ++           D   G    LT
Sbjct: 113 LSGPGADGAVGYLLKEKVGRVADFLRAVETVSAGGVVIDPEVVRHATRADSPQGPLARLT 172

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            RE E L  ++EG+++ EIA  L +S   V+ ++A++  K  
Sbjct: 173 AREREVLAHMAEGRSNAEIATELFLSGAAVSKHVANVFVKLG 214


>gi|149925649|ref|ZP_01913913.1| regulatory protein, LuxR:Response regulator receiver [Limnobacter
           sp. MED105]
 gi|149825766|gb|EDM84974.1| regulatory protein, LuxR:Response regulator receiver [Limnobacter
           sp. MED105]
          Length = 210

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 5/148 (3%)

Query: 103 QRPTELFCPVFHTLPENITP--PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
            +P E+   V      ++     A  D +      +   + +     + +  + ++  L 
Sbjct: 45  SKPAEVIDLVSQRFANSLRIFFTALGDAKIERQVANSGALLLSKSQHYKELMVQVQAFLK 104

Query: 161 E--IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
              + L +  Q N F+S     G    LT ++ + +  +S G+T  EIA ILG+S +TVN
Sbjct: 105 RDSVNLNSISQRNEFQSLIQMPGSPKPLTIKQAQVMEQVSLGRTGKEIAKILGMSPDTVN 164

Query: 219 NYIASIMRKTATKTRSGAIA-YAVRNNI 245
            +I     +   + R  A++ Y+V   +
Sbjct: 165 AHIKEAFGRLGVQNRGEAVSNYSVARKL 192


>gi|126462723|ref|YP_001043837.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104387|gb|ABN77065.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 247

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L A +  +    +     D  LT R+      +  GK++  IA  L +  +TV  +I 
Sbjct: 158 ASLTALRGALPDRAEPQIAVDEHLTERQRAVCDALRRGKSNKIIAGELNLCESTVKVHIR 217

Query: 223 SIMRKTATKTRSGAI 237
           +IM+K   K R+ A 
Sbjct: 218 NIMKKLGAKNRTEAA 232


>gi|329965227|ref|ZP_08302157.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
 gi|328523247|gb|EGF50347.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
          Length = 204

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +T + +G T+  IA  L +S +TV  +  +I RK    + +G   YA+ N +
Sbjct: 135 LSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|284990498|ref|YP_003409052.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063743|gb|ADB74681.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 226

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 19/184 (10%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP--------------VFHTLPENIT 121
            +++   P  ++  + +   D      QR +E   P              V   L +  +
Sbjct: 45  EVITRTHPDVVLMDIRMPRMDG-LTATQRLSEQPDPPKVIVLTTFDADDHVVRALAQGAS 103

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                D     +   + ++  G  +L P     +  +L    + A       +       
Sbjct: 104 GFLLKDTSAAMIVEAIQKVAAGEPMLSPS----VTAQLIRRVVDAQSTGVNAERARTAAA 159

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +L+ RE +    + +GK++ EIA  L +S  TV  +++ I  K     R        
Sbjct: 160 RLGQLSDRERDVAVAVGQGKSNAEIAGDLFMSLPTVKAHVSHIFVKLDVTNRVQIAICVH 219

Query: 242 RNNI 245
              +
Sbjct: 220 EAGL 223


>gi|226355253|ref|YP_002784993.1| LuxR family transcriptional regulator [Deinococcus deserti VCD115]
 gi|226317243|gb|ACO45239.1| putative transcriptional regulator, LuxR family protein
           [Deinococcus deserti VCD115]
          Length = 762

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  + +G     IA +L IS  T + ++ +++ K   + R     +A+   
Sbjct: 700 ELTTREREVLILLVQGHPDRRIAKLLNISPGTASKHVGNMLGKLGLRNRVDLARWALERG 759

Query: 245 I 245
           I
Sbjct: 760 I 760


>gi|221135484|ref|ZP_03561787.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Glaciecola sp. HTCC2999]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    + IL   +W    ++     + +++         LT  + + L ++ +G  + +I
Sbjct: 111 IAKAIKSILDGNVWLPESVSDKIEEVDEAFSKLADNVASLTPSQYKVLCYMRDGLLNKQI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
              L I+  TV  ++ +I RK     R+ A+  A +  +
Sbjct: 171 GYNLDIAEATVKAHVTAIFRKLGINNRTQAVLIASQLEL 209


>gi|73542427|ref|YP_296947.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72119840|gb|AAZ62103.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 219

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQAN 171
           F  +    TP      R  S    V +            +++  D  +     L+    +
Sbjct: 83  FIFMSAEATPEIVGRARALSACGFVGKHLDAHAFTSAVRKVLAGDTSFPTDEALSGRAQS 142

Query: 172 MFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              ++ +     +  LT R+   L  + EG  +  IA  LG++ NTV  ++++I+++   
Sbjct: 143 FGPAHGIPVTPAELGLTPRQGSVLALVLEGLPNKVIARRLGLTENTVKEHVSAILQRLGV 202

Query: 231 KTRSG 235
           +TR  
Sbjct: 203 RTRMQ 207


>gi|332186067|ref|ZP_08387813.1| sensory box protein [Sphingomonas sp. S17]
 gi|332013882|gb|EGI55941.1| sensory box protein [Sphingomonas sp. S17]
          Length = 614

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 13/142 (9%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP-------------KGRIILRDRLWEIG 163
           PE ++ P  +  R  +L   V     G ++                     L   L    
Sbjct: 460 PEGLSVPRELKARAIALPSIVLDGTGGDLMSAVTAMKAGATDYIIMDDEAALHAGLSSAI 519

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                        +    +   LT RE E L  + EG T+  +   LGIS  TV  + A 
Sbjct: 520 AECLAAVRPVSRDEAASARITRLTPREREVLLGLVEGDTNKMLGKKLGISPRTVELHRAQ 579

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
           +M +    + +  I +A+   I
Sbjct: 580 VMNRMNAASLAELIQFALAAGI 601


>gi|319901236|ref|YP_004160964.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
 gi|319416267|gb|ADV43378.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
          Length = 205

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +T + +G T+  IA  L +S +TV  +  +I RK    + +G   YA+ N +
Sbjct: 136 LSQREREIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 195

Query: 246 V 246
           V
Sbjct: 196 V 196


>gi|303246143|ref|ZP_07332424.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302492539|gb|EFL52410.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E    +++G     IA  L IS  TV  +  +IM K A +T +     A+R+ +
Sbjct: 154 LSRREMEVFRLLADGLALKRIAATLCISPKTVETHKYNIMEKLAAETPADLTKIALRHGL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|119492940|ref|ZP_01623970.1| transcriptional regulatory protein [Lyngbya sp. PCC 8106]
 gi|119452866|gb|EAW34040.1| transcriptional regulatory protein [Lyngbya sp. PCC 8106]
          Length = 121

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                  +  +L+ RE E    ++EG  +  IA  LGIS+ TV+ Y+  I  K     R+
Sbjct: 48  RCQPKSDQSVQLSQREQEIAKLVAEGLPNKCIAKELGISQWTVSTYLRRIFGKLNVTNRA 107

Query: 235 GAIAY 239
              A 
Sbjct: 108 AMTAK 112


>gi|148553617|ref|YP_001261199.1| two component LuxR family transcriptional regulator [Sphingomonas
           wittichii RW1]
 gi|148498807|gb|ABQ67061.1| two component transcriptional regulator, LuxR family [Sphingomonas
           wittichii RW1]
          Length = 252

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G I L   + E   +A+ +A++ +  +        LT ++   L  +  G+ + +IA  
Sbjct: 159 SGEIYLPAAIGEPAEIASEEADILQRIES-------LTPQQKTVLVQLVNGRLNKQIAHD 211

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L +S  TV  ++++I++K    +R+ A+  A R
Sbjct: 212 LSVSMTTVKAHVSAILQKMGVFSRTQAVIKANR 244


>gi|160898545|ref|YP_001564127.1| LuxR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364129|gb|ABX35742.1| transcriptional regulator, LuxR family [Delftia acidovorans SPH-1]
          Length = 163

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE++ L  +++G    +IA  LGIS +TV  + +++  +   +     + +A R  
Sbjct: 30  LTAREIDVLEAMAKGLGCKDIAHTLGISEHTVRKHRSNMCTRLGLRNAVELVTHARRQG 88



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           RL     +        + +         L+ RE E L  +  G TS EIA  L +S  TV
Sbjct: 71  RLGLRNAVELVTHARRQGWLSAARSPLPLSPREQEVLAHVLAGHTSKEIARSLYLSDLTV 130

Query: 218 NNYIASIMRKTATKTRSGA---IAYAVRNN 244
             +  +I+RK    + +        A RN 
Sbjct: 131 RKHRENILRKLGLTSTAQLQTFAPTATRNG 160


>gi|118589374|ref|ZP_01546780.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118438074|gb|EAV44709.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 205

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT RE+E L  I++G ++ E    LGIS  TV  + A IM K   +  +  + 
Sbjct: 144 LTRRELEVLKEITDGASNKEAGRTLGISPRTVEVHRARIMEKLGARNAADLVR 196


>gi|89891781|ref|ZP_01203283.1| DNA-binding response regulator, LuxR family [Flavobacteria
           bacterium BBFL7]
 gi|89515936|gb|EAS18601.1| DNA-binding response regulator, LuxR family [Flavobacteria
           bacterium BBFL7]
          Length = 218

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 13/166 (7%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAGMD---NRYC 131
           +    P  L+  + L   +    +         L   +    PE I   + +    N Y 
Sbjct: 50  IKEHKPELLILEIDLPNSNGAGALRDIRAHFPDLKVLIVSCHPEEIYAISAIKAGANGYI 109

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           + T     I+  +  +   G   L D + E+        +  K+      +  +L+ RE+
Sbjct: 110 AKTKSSKEIKKAIETVI-SGETFLSDSIKEV------MNSKSKTGKSVTLRYKKLSAREI 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E L  +S GK + EI+ IL I+  TV+ Y   +++K      +  I
Sbjct: 163 EVLNLLSRGKRNKEISQILSINEKTVSTYKTRLLKKLNVDNIADLI 208


>gi|325697545|gb|EGD39431.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|328944949|gb|EGG39107.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
          Length = 199

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLDAENRTEAVRIGQEKG 197


>gi|308231539|ref|ZP_07663880.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu001]
 gi|308216986|gb|EFO76385.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu001]
          Length = 771

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 713 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 770


>gi|325672904|ref|ZP_08152598.1| exopolyphosphatase [Rhodococcus equi ATCC 33707]
 gi|325556157|gb|EGD25825.1| exopolyphosphatase [Rhodococcus equi ATCC 33707]
          Length = 854

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             LLA+    ++ +   H     ELT RE   L  ++ G ++ EIA  L +S NTV + +
Sbjct: 773 AALLASDAREVYPAAVHH----VELTERERAVLAELARGLSTLEIARTLFVSTNTVKSQL 828

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ RK    +R  A+  A R  ++
Sbjct: 829 RTLYRKIDAHSRDEALEIAYRTGLI 853


>gi|259415201|ref|ZP_05739123.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
 gi|259349111|gb|EEW60865.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
          Length = 239

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            ++ L+A Y       +++ +    +  L+ RE E L+ ++EG +    A  + IS +T+
Sbjct: 149 RDLILVAHYVNRRALDFEMSFYPLPEQPLSMRESEALSLLAEGMSRARAAEAMDISEHTL 208

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             YI     K   +  + A+A AV   ++
Sbjct: 209 RVYIEGARSKLQAQNTTHAVARAVTMGLI 237


>gi|207722024|ref|YP_002252462.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206587198|emb|CAQ17782.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 232

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++          D+    +  ++  +  G   + P   II R  L       A  A 
Sbjct: 101 VMRSIEAGAAGYLLKDSSAARILDEIRSLASGGSPISP---IIARQILARFRQGGARGA- 156

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         L+ RE E L  I++G T+ EIA ++ +S  TV  ++  I  K    
Sbjct: 157 -VDEAPPASASPPLLSAREKEVLDLITKGFTTQEIAKLMALSHFTVRTFVRRIYSKLKVT 215

Query: 232 TRSGAIAYAVRNNIV 246
           +++ AI  A    ++
Sbjct: 216 SKAEAIYEARTLGLL 230


>gi|182412086|ref|YP_001817152.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839300|gb|ACB73552.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 217

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
           PV  ++               ++   V     G   + P            +GLL A   
Sbjct: 94  PVIESIKSGACGYLLKGASSEAVLGAVDDALAGGAPMSPSIAR------RVLGLLRAAPT 147

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            M K   V  GK   LT RE E L  ++ G++  EIA   G + +T+ N++A+I  K   
Sbjct: 148 TMAK---VAEGKLAALTAREEEVLARVAAGRSDKEIAAEFGTALSTIKNHLANIYAKWRV 204

Query: 231 KTRSGAIAY 239
           ++R+ A   
Sbjct: 205 RSRTEAAVR 213


>gi|313159072|gb|EFR58447.1| transcriptional regulator, LuxR family [Alistipes sp. HGB5]
          Length = 201

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 1/169 (0%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +    P   V  + + +  +    L R       V        TPP       C     V
Sbjct: 22  LLHRMPAANVDILEIGDISQLAAQLSRHRPDVLIVNPASLGLCTPPQLRAQTGCEGMRCV 81

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +++ +      G       +++       +            +   L+ RE E +  I
Sbjct: 82  A-LQLAMTDAATLGAYDEVLSIYDSEDCVRRKIVQPADESPREERQEPLSVREREIVVCI 140

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G ++ +IA  L IS +TV  +  +I+ K    + +G   YA+ N +V
Sbjct: 141 VKGMSNKQIADTLCISTHTVITHRRNIVAKLQIHSPAGLTIYAIVNKLV 189


>gi|298247333|ref|ZP_06971138.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297549992|gb|EFH83858.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1044

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+ +E   L  +  G+++ EIA  L +S NTV   + +I RK     R  A   A +  +
Sbjct: 984  LSSQEARVLRLLVAGRSNPEIANELVVSINTVKTQLQNIYRKLNVSNRVEASEAARQLKL 1043

Query: 246  V 246
            V
Sbjct: 1044 V 1044


>gi|228998002|ref|ZP_04157603.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|229005552|ref|ZP_04163264.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228755739|gb|EEM05072.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228761735|gb|EEM10680.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
          Length = 96

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  +  G    EIA +L  S  T++N+I  I  K    +   A+   ++  
Sbjct: 28  ELTDSEKQILQLLCGGYKRKEIATMLYASERTISNHIQHIFDKLDVSSSLEAVTKGIQLG 87

Query: 245 IV 246
            +
Sbjct: 88  YI 89


>gi|182419652|ref|ZP_02950897.1| transcriptional regulatory protein DegU [Clostridium butyricum
           5521]
 gi|237665755|ref|ZP_04525743.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376542|gb|EDT74119.1| transcriptional regulatory protein DegU [Clostridium butyricum
           5521]
 gi|237658702|gb|EEP56254.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +F  +          D  +  ++  +     G +LL P+   +    + E   L+     
Sbjct: 91  IFTGIRNGADGYILKDAGFDEISKAIKTACAGNILLNPE---VASKIIKEFNKLSP---- 143

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K+ + +  K   LT RE++    + +GK++ +I   L ++  T+ NY+  I  K    
Sbjct: 144 -NKAINYNKEKLNLLTKREMDVAILVGQGKSNKDICNELFLTEGTIKNYLTKIFEKLNLA 202

Query: 232 TRSGAIAY 239
           +R+    +
Sbjct: 203 SRTELALF 210


>gi|330807848|ref|YP_004352310.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375956|gb|AEA67306.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 217

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLNVRTRTQAA 204


>gi|163855241|ref|YP_001629539.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258969|emb|CAP41268.1| transcriptional regulator, LuxR-family [Bordetella petrii]
          Length = 243

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  +   LT R+ E L  ++ G T   I   L I+  T   +  ++ ++     R+ A+ 
Sbjct: 162 HESQALGLTPRQYEVLVLLARGYTLKAIGRDLNIAVTTAKVHAETVYQRLHVHNRTEAVY 221

Query: 239 YAVRNN 244
            A+   
Sbjct: 222 AAISRG 227


>gi|159044443|ref|YP_001533237.1| putative response regulator receiver protein [Dinoroseobacter
           shibae DFL 12]
 gi|157912203|gb|ABV93636.1| putative response regulator receiver protein [Dinoroseobacter
           shibae DFL 12]
          Length = 204

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 14/170 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V  D+    +  +    K        RP  +               AG    +   T 
Sbjct: 48  DLVLLDYTMPGMNGLE-GLKKAIAASFGRPVAMMSGTASKAIAQEAIDAGA-IGFLPKTM 105

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +      I  D L  +           ++ D+   +  +L+ RE + L 
Sbjct: 106 AAKSMVNAVRFMAMGETYIPLDFLNAV----------EETPDIPLAR--QLSEREHQVLG 153

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  G ++ EIA  L +   T+  ++ ++ RK   K R+ A        +
Sbjct: 154 GLCRGLSNKEIARELDLQEVTIKLHVKTLCRKIDAKNRTHAAMIGKEAGL 203


>gi|83745819|ref|ZP_00942876.1| hypothetical protein RRSL_04487 [Ralstonia solanacearum UW551]
 gi|83727509|gb|EAP74630.1| hypothetical protein RRSL_04487 [Ralstonia solanacearum UW551]
          Length = 314

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   ++ R+ E L  +S G +   +  +LGIS  TV  +  ++ R+   + +S A+
Sbjct: 161 AEAAQRLNVSQRQYEVLVLLSRGHSVKGVGRLLGISEATVKTHACTLYRRLNVRNKSEAV 220

Query: 238 AYAVRNNI 245
             A+R  I
Sbjct: 221 YAAMRLGI 228


>gi|256258754|ref|ZP_05464290.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297247587|ref|ZP_06931305.1| monoamine regulon transcriptional regulator [Brucella abortus bv. 5
           str. B3196]
 gi|297174756|gb|EFH34103.1| monoamine regulon transcriptional regulator [Brucella abortus bv. 5
           str. B3196]
          Length = 245

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G ++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 180 LTAREVEVVHAIRLGLSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|220914297|ref|YP_002489606.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219861175|gb|ACL41517.1| transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 908

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
               D ++    FDVA   I          ++L+ R      +A    +  ++ +     
Sbjct: 788 QLAQDLQHDRFAFDVAEAVIRGAHALEDRALLLQAR-----RIAETCRHRMRAPEDTSQH 842

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +  +T RE+E  T  + G ++  IA  L +S  TV  ++  I  K     RS  
Sbjct: 843 EDRITARELEIATLAARGHSNKAIAARLHLSVRTVEGHLYQIYGKLKIVERSEL 896


>gi|330957744|gb|EGH58004.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 208

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 10/204 (4%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
             + +  L E  G    ++   D   +     +     P  ++  + + + D    V+ R
Sbjct: 13  IRLAVRMLMERHGYE--VIAETDNGVDAL--QLAREHLPDIVILDIGIPKLDG-LEVIAR 67

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFD--VARIRIGLMLLFPKGRIILRDRLWEI 162
              +  P F  L      P     R         V + +    LL     ++     +  
Sbjct: 68  LAAMTLP-FKVLILTSQAPGHFSMRCMQAGAAGYVCKQQDLTELLSAIKAVLSGYSYFPN 126

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L   +++M  + +        L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y  
Sbjct: 127 QALHTVRSSMGNASESDMVDR--LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKT 184

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ K    +    I  A RN +V
Sbjct: 185 RLLLKLNAHSLVDLIELAQRNGLV 208


>gi|317123718|ref|YP_004097830.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587806|gb|ADU47103.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 265

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--- 184
            R         R R  + LL P  R + R       +  +         +   G+D    
Sbjct: 132 MRASGEKDFSERDRAVVELLTPHLRNLERTAHLRELVRRSVCHAQRYQRESATGEDVGLG 191

Query: 185 --ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
              LT RE E +  ++ G T+ EIA  L +S +TV  ++  I  K  
Sbjct: 192 FSALTRREHEIVELVASGSTNAEIATALWVSPSTVKKHLEHIYAKLG 238


>gi|313111442|ref|ZP_07797244.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310883746|gb|EFQ42340.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 204

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 38/73 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S D        L+ RE+  L +++ G T+  IA  L +S  TV+ Y + IM K    + 
Sbjct: 132 QSRDNEARMLESLSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSL 191

Query: 234 SGAIAYAVRNNIV 246
           +G I +A R+ ++
Sbjct: 192 AGLIDFARRHELI 204


>gi|229494461|ref|ZP_04388224.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis
           SK121]
 gi|229318823|gb|EEN84681.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis
           SK121]
          Length = 883

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 52/139 (37%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   V H+        +   +R CS+      +R    +       +      +   LA 
Sbjct: 745 LVQAVAHSELGEPRLASQEWSRACSIADQTGLLRSFATIASADVEKLESMAETKSRALAE 804

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +           +    ELT RE + L+ ++ G  S  +A  L +S NTV   + ++ +K
Sbjct: 805 FSKRSPAESFPEFVHIVELTEREQKVLSLLALGMGSAAMADKLYVSVNTVKTQLRTLYKK 864

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R+ AI  A +  ++
Sbjct: 865 LDVHNRNEAITRARQLRLL 883


>gi|262202633|ref|YP_003273841.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085980|gb|ACY21948.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 48/172 (27%), Gaps = 2/172 (1%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +  + Q  D +        + R   ++       +   P  +    F      +   A  
Sbjct: 39  EALERQSADPVDMVLMDLRMPRMDGIAATAALKQLADPPNVIVLTTFDADDYVVRALAVG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         I   +  +      +         L+                +   L
Sbjct: 99  ADGFLLKDTPPDEIVHAIKSVLAGRPALSPS--VTAALIKQVVDGGGVRSAQAAQRAESL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           T RE +    ++ G ++ EIA  L +S  TV  +I+ I  K     R     
Sbjct: 157 TERERDVAVELARGASNAEIAERLYMSLATVKAHISHIFTKLDATNRVQVAI 208


>gi|213691342|ref|YP_002321928.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522803|gb|ACJ51550.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457415|dbj|BAJ68036.1| putative two-component response regulator [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 245

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +  K+ D  W     L+ REVE L   SEG  ++EIA  L +S+ T+  Y+   + K   
Sbjct: 170 DFTKASDKRWMNGDRLSAREVEILRMYSEGLETEEIARSLSLSKFTIGTYVKRAVAKLHA 229

Query: 231 KTRSGAIAYAVRNNIV 246
           + R  AI    +  ++
Sbjct: 230 RNRIHAIIMCEKRGLL 245


>gi|118602974|ref|YP_904189.1| two component LuxR family transcriptional regulator [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567913|gb|ABL02718.1| two component transcriptional regulator, LuxR family [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 209

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELT 187
            Y     D   +   L  +     ++ +D  + +   L     +   S+D        LT
Sbjct: 97  GYLLKDMDPDELVDALNEVVKGSIVVAQDMTYILAKALRDELTDNEPSFDS-------LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E    +S G ++  IA  LGIS  TV  ++ SI++K +  +R      
Sbjct: 150 SREKEVACQVSSGYSNKVIARELGISDGTVKLHVKSILKKLSLSSRVEVAVM 201


>gi|118581123|ref|YP_902373.1| two component LuxR family transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118503833|gb|ABL00316.1| two component transcriptional regulator, LuxR family [Pelobacter
           propionicus DSM 2379]
          Length = 208

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 20/219 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++  D        +  + E  G    ++V  +    +   S      P  +V  +A
Sbjct: 1   MTVRILIADDHAIVREGLTMILESSG----MIVAGEARDGRDALSQTEVLRPDVVVMDIA 56

Query: 92  LSEK---DKYYNVLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           + E    D    +  R  E+   V   H   E++        R   L        +  + 
Sbjct: 57  MPELNGIDATRMIHGRLPEVKVIVLSMHNTREHVFRAMQAGARAYLLKESAGSGLVDAVR 116

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              +G     + +     +A +++ +             L+ RE E +  + EG+TS EI
Sbjct: 117 AVIRGECYFGEGVDAPQAVAGFKSPL-----------DSLSLREREVIQLVVEGRTSAEI 165

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A +L +S  ++  Y + +M K         + +A+++ I
Sbjct: 166 AELLSLSPKSIETYRSRLMVKLGVGNIPALVKFALQHGI 204


>gi|310822246|ref|YP_003954604.1| LuxR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395318|gb|ADO72777.1| Transcriptional regulator, LuxR family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 394

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           LT R+ + LT   +GKT+ EIA+ LG  ++TV  +++ I+RK     RS
Sbjct: 336 LTARQADVLTLAVQGKTNKEIALELGCQKSTVELHMSHILRKCGADNRS 384


>gi|298250381|ref|ZP_06974185.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548385|gb|EFH82252.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 908

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  + P G +   +R     LLA ++               E L+ +E   L     G +
Sbjct: 806 IRAVLPGGDMGNNERYVR-ELLAVFEGGRVSQPSSSLSYPSEALSVQEQRVLRLFVAGLS 864

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             EIA  L IS NTV  +++ I RK    +R+ A   AVR 
Sbjct: 865 KPEIANELIISVNTVKTHLSRIYRKLNVTSRAEA-REAVRR 904


>gi|288940382|ref|YP_003442622.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288895754|gb|ADC61590.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 208

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +AN     D+   +  ELT RE E +  +++GK++ EIA  LG+S  TV  + A +M K 
Sbjct: 129 RANRLARADIAM-RLAELTPREHEVMAMVTDGKSNKEIAAALGVSAKTVEAHRARVMEKM 187

Query: 229 ATKTRSGAIAYAV 241
             ++ +  +  A+
Sbjct: 188 RAESLAELVRMAL 200


>gi|15807682|ref|NP_285334.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460582|gb|AAF12288.1|AE001862_114 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 211

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 52/168 (30%), Gaps = 23/168 (13%)

Query: 83  PFDLVRCMALSEK---DKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFD 136
           P  LV  + +      D    V Q   +    +  T          +D     Y      
Sbjct: 59  PDVLVTDIEMPRLSGLDLAERVRQEAPQTRVVIVTTFTRAGYLRRALDAGARGYLLKDAP 118

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +   GR I      EI                 W     LT RE++ L  
Sbjct: 119 SHELADAIRRVHAGGRAIDAGLAEEI-----------------WDAQSPLTEREIQVLRA 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
              G+++  IA  LGI   TV NY++  + K   + R+ A   A    
Sbjct: 162 AETGRSTAAIAAELGIGVGTVRNYLSEAIGKLGAENRAEAARKARERG 209


>gi|162418425|ref|YP_001606567.1| LuxR family DNA-binding response regulator [Yersinia pestis Angola]
 gi|162351240|gb|ABX85188.1| DNA-binding response regulator, LuxR family [Yersinia pestis
           Angola]
          Length = 210

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 15/175 (8%)

Query: 79  SSDWPFDLVR-CMALSEKDKYYNV--LQRPTELFCPVFHTLPEN----ITPPAGMDNRYC 131
             + P DLV   + L   D +  +  LQ+        F +        +       N + 
Sbjct: 44  LKNNPVDLVIIDIELPNFDGFSLLKKLQQRGFTGKSPFLSAKNEQVFAVRALQAGANGFI 103

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S   D++ I      +         + L ++            S      +   L+ RE+
Sbjct: 104 SKNKDISEILFAAQNVLRGYSFFPSETLTQLA--------GQPSSHDPVNRARLLSEREI 155

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 156 NVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|332306220|ref|YP_004434071.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173549|gb|AEE22803.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 218

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 65/174 (37%), Gaps = 11/174 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-FCPVFHTLPEN-----ITPPA 124
           E  L+ I S+D    ++  + +        +L    E    PV     E      +   +
Sbjct: 37  ESTLELIKSNDEIDLILLDLNMPGMTGLNGLLDVRNECPTTPVVIVSAETEKQKILQTLS 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + + +     I   +  +F     +  + +      +    N     ++   K  
Sbjct: 97  YGAVGFIAKSSSKKVIGEAIQSVFEGNVYLPPNIMR-----SQTVDNQTNECEISPEKIS 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT RE+  L  +++G+ + +IA  L IS  T+ ++++SI++K     R   + 
Sbjct: 152 LLTRRELIVLKHLTKGEANKQIAYNLHISETTIKSHVSSILKKLGATNRVKVVV 205


>gi|327480133|gb|AEA83443.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 36/79 (45%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +AN+ +           LT ++   LT + +G  + +IA  L +S  T+  ++ +I RK
Sbjct: 135 DEANVSEEAKAASAGLASLTPQQFRVLTMVCDGLLNKQIAYELSVSEATIKAHVTAIFRK 194

Query: 228 TATKTRSGAIAYAVRNNIV 246
              +TR+ A     +   +
Sbjct: 195 LGVRTRTQAALLLQQMGSI 213


>gi|325067026|ref|ZP_08125699.1| LuxR family two component transcriptional regulator [Actinomyces
           oris K20]
          Length = 203

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 22/162 (13%)

Query: 89  CMALSEKDKYYNVLQR------PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            + +  +D      +          L    F                +         +  
Sbjct: 56  DIDMPGRDGLAATAEVVDSDLPCRCLIVTTFGRPGYLSRGMEAGAAGFIVKDTPPEALAE 115

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R+I  +   E  LL                    LT RE E L   + G  
Sbjct: 116 AIRKVHAGLRVIDPELAQESVLLG----------------PNPLTEREKEVLLAAATGAD 159

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + EIA  L +   TV NY++S + KT  + R+ A   A  N 
Sbjct: 160 AREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNG 201


>gi|306407932|dbj|BAJ16474.1| regulatory protein [Streptomyces graminofaciens]
          Length = 243

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                  L+ +E E +T ++ G +  EIAV + ++  TV NY++ I  K   ++RS A
Sbjct: 171 DSSPSLALSPQEREIMTRLASGLSVREIAVEMRLAEKTVRNYLSHIYGKLGVRSRSQA 228


>gi|300702624|ref|YP_003744224.1| two component response regulator transcriptional regulator protein
           [Ralstonia solanacearum CFBP2957]
 gi|299070285|emb|CBJ41577.1| putative two component response regulator transcription regulator
           protein [Ralstonia solanacearum CFBP2957]
          Length = 232

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++          D+    +  ++  +  G   + P     +  R  + G  A   A+
Sbjct: 101 VMRSIEAGAAGYLLKDSSAARILDEIRSLASGGSPISPIIARQILARFRQGG--ARGAAD 158

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         L+ RE E L  I++G T+ EIA ++ +S  TV  ++  I  K    
Sbjct: 159 EAPP---ASASPPLLSAREKEVLDLITKGFTTQEIAKLMALSHFTVRTFVRRIYSKLKVT 215

Query: 232 TRSGAIAYAVRNNIV 246
           +++ AI  A    ++
Sbjct: 216 SKAEAIYEARTLGLL 230


>gi|148822580|ref|YP_001287334.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|289554850|ref|ZP_06444060.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289761519|ref|ZP_06520897.1| regulatory protein [Mycobacterium tuberculosis GM 1503]
 gi|148721107|gb|ABR05732.1| hypothetical transcriptional regulatory protein [Mycobacterium
           tuberculosis F11]
 gi|289439482|gb|EFD21975.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289709025|gb|EFD73041.1| regulatory protein [Mycobacterium tuberculosis GM 1503]
          Length = 887

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 828 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 885


>gi|118471285|ref|YP_888706.1| regulatory protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172572|gb|ABK73468.1| putative regulatory protein [Mycobacterium smegmatis str. MC2 155]
          Length = 943

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT  E+  +  I+EG T+  +A  L +S +TV  ++ +   K    +R+   
Sbjct: 885 LTDSELTVVQLIAEGATNRAVAEHLQLSPHTVKTHVRNAFAKLGVTSRAQLA 936


>gi|218753069|ref|ZP_03531865.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|253799593|ref|YP_003032594.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254550372|ref|ZP_05140819.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|297633912|ref|ZP_06951692.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|297730900|ref|ZP_06960018.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
 gi|313658233|ref|ZP_07815113.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
 gi|253321096|gb|ACT25699.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|328459339|gb|AEB04762.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 870

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 811 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 868


>gi|332306646|ref|YP_004434497.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173975|gb|AEE23229.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 213

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKT 202
           L ++    + +L    W    L      +  S +  +  K  +LT  +++ L  +++G  
Sbjct: 109 LPVISDAVQQLLDGEQWLPSELFEQVQKIEDSQEQAFAAKLAQLTPHQLKVLQLMADGLL 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + +IA  LG+S +T+  ++++++ K     R+ A
Sbjct: 169 NKQIAYELGVSESTIKQHVSAVLHKLGFNNRTQA 202


>gi|312141833|ref|YP_004009169.1| luxr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311891172|emb|CBH50491.1| putative LuxR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 866

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             LLA     ++ +   H     ELT RE   L  ++ G ++ EIA  L +S NTV + +
Sbjct: 785 AALLATDAREVYPAAVHH----VELTERERAVLAELARGLSTLEIARTLFVSTNTVKSQL 840

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ RK    +R  A+  A R  ++
Sbjct: 841 RTLYRKIDAHSRDEALEIAYRTGLI 865


>gi|303237319|ref|ZP_07323889.1| transcriptional regulator, LuxR family [Prevotella disiens
           FB035-09AN]
 gi|302482706|gb|EFL45731.1| transcriptional regulator, LuxR family [Prevotella disiens
           FB035-09AN]
          Length = 251

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A Y     K +  +  K  EL   E+E L     G T  EIA  +  S +T+  Y  S  
Sbjct: 171 ANYWEYSMKGHKWNEKKGIELKAEEIEVLQLSVTGFTMGEIAERMCKSVDTIKFYKRSAF 230

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           +K   +  + AIA ++ + +
Sbjct: 231 KKLGVENITEAIAKSMTHRL 250


>gi|226306403|ref|YP_002766363.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226185520|dbj|BAH33624.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 211

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 11/129 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +           LT  +  +  G  +L P+             L+  +   
Sbjct: 89  VFAALRAGASGFLLKTATADELTNAIRNVAAGDAVLAPRAAR---------ALIGEFVQR 139

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K  +       ELT RE E L  +  G ++ E++  LG+   TV ++++ ++ K    
Sbjct: 140 APKPTEPLGLS--ELTDREREVLALLGTGMSNAELSRELGVGAPTVKSHVSRVLSKLHLT 197

Query: 232 TRSGAIAYA 240
           +R  A   A
Sbjct: 198 SRVQAAILA 206


>gi|297582617|ref|YP_003698397.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297141074|gb|ADH97831.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 218

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 3/137 (2%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L    F+     I         Y     D   +  G+      G  +          +  
Sbjct: 81  LMLTTFNDDDYAIEALRHGARGYLLKDADPDALIRGIRTCLEGGLALEP---HVAANVVP 137

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              N  ++         ++T RE   +  +  G ++ EI+  L +S  TV N I+ I+ K
Sbjct: 138 LLMNKPETKPEFPALPEDITERETTVIACVGRGLSNKEISEELYLSVGTVKNLISVILHK 197

Query: 228 TATKTRSGAIAYAVRNN 244
              + R+    YA+R+ 
Sbjct: 198 LELRDRTQLAIYAIRSG 214


>gi|21220777|ref|NP_626556.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7619763|emb|CAB88186.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 210

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 19/157 (12%)

Query: 91  ALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            LS  D    + +R      L    F                +      V  +   +  +
Sbjct: 68  GLSGLDAAAELRERAPGCRVLILTTFGRPGYLRRAMEAGAAGFLVKDGPVEELAGAIRRV 127

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++                    +          LT RE + L   ++G T  +IA
Sbjct: 128 LGGETVVDPAL----------------AAAALSAGPSPLTARECDVLRASADGATVADIA 171

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L +S +TV NY++S + KT T+ R+ A+  A    
Sbjct: 172 GALHLSESTVRNYLSSAIGKTGTRNRAEALRAARGQG 208


>gi|127513542|ref|YP_001094739.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126638837|gb|ABO24480.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 222

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D    K   L+ R+ + L   ++G  + +IA  LG+S  T+  + ++I  K    TR+
Sbjct: 140 TLDSMSSKIASLSPRQHKILMMFADGLLNKQIAYELGLSEATIKAHASAIFLKLGVHTRT 199

Query: 235 GAIA 238
            A+ 
Sbjct: 200 QAVI 203


>gi|114563003|ref|YP_750516.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114334296|gb|ABI71678.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             K   LT ++ + L   +EG  + +IA  L +S +T+ ++ ++I  K   K R+ A+ 
Sbjct: 144 EDKLTSLTPQQRKILLMFAEGLLNKQIAYELNLSESTIKSHASTIFLKLGVKNRTQAVI 202


>gi|302560889|ref|ZP_07313231.1| two-component system response regulator TcsR2 [Streptomyces
           griseoflavus Tu4000]
 gi|302478507|gb|EFL41600.1| two-component system response regulator TcsR2 [Streptomyces
           griseoflavus Tu4000]
          Length = 213

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLL 147
            +S  D    + +R  E    +  T          MD     +      V  +   +  +
Sbjct: 71  GMSGLDAAAELRERAPECRVLILTTFGRPGYLRRAMDAGAAGFLVKDGPVEELASAVRRV 130

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++         +LAA   +   S          LT RE + L   + G T  +IA
Sbjct: 131 LAGETVVDP-------VLAAAALSAGPS---------PLTARERDVLRASAGGATVADIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             + +S +TV N++++++ KT T+ R+ A+  A    
Sbjct: 175 ARVHLSESTVRNHLSAVIGKTGTRNRTEALHEARHKG 211


>gi|212635220|ref|YP_002311745.1| response regulator [Shewanella piezotolerans WP3]
 gi|212556704|gb|ACJ29158.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Shewanella piezotolerans WP3]
          Length = 196

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ R++  L  +++GK++ ++A  L IS  TV  +  SIM+    K+ +  I YA+   +
Sbjct: 136 LSARQLSVLRLLAQGKSAKQVADALFISPRTVEFHKYSIMKLIEAKSSAELIQYALSRGL 195

Query: 246 V 246
           V
Sbjct: 196 V 196


>gi|188591280|ref|YP_001795880.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|170938174|emb|CAP63160.1| putative transcriptional regulator, response receiver CheY domain,
           HTH LuxR domain [Cupriavidus taiwanensis LMG 19424]
          Length = 204

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 10/142 (7%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  TLP         ++   +    V  +R G      K R +        G+L+ Y   
Sbjct: 65  VVATLPGVPLLVLSGNDTAQA---PVRALRAGAHGFVAKQRGVEDVMQAVRGVLSGYLVF 121

Query: 172 MFKSYDVHW--GKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             ++ +     G+  +     L+ RE+  L +++ G ++  IA  L IS  TV+ + A+I
Sbjct: 122 PLQTLETVRQLGEQQQAGLPRLSNREITILQYLARGHSNKAIAAQLLISSKTVSTHKANI 181

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           M K    +    + YA R+ +V
Sbjct: 182 MAKLHVGSLVEMVDYARRHQLV 203


>gi|251797552|ref|YP_003012283.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
 gi|247545178|gb|ACT02197.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
          Length = 863

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 14/180 (7%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L Q + + S +  D    +   +++ +    Y    R   +   + H          G  
Sbjct: 683 LKQLEFIKSSLEQDHCLLVRTEISIVQSLAEYQRGNRGEAMH--ILHEA-----LVIGET 735

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDR-------LWEIGLLAAYQANMFKSYDVHW 180
           N Y     D       L+ ++ + R+   D+       L  +  L  Y   +        
Sbjct: 736 NGYIRSFVDEGIPMKRLLQMYTEQRLREADQDAWQRVSLDYVKGLLEYIPELENPSQPQP 795

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT +E   L  + +G  + +IA  L +   TV  Y++ I  K    +R+ A+A A
Sbjct: 796 ALIEPLTEQETFILRLLGQGAPNKQIAAKLALKEGTVKVYLSRIYAKLGVSSRTQALAAA 855


>gi|329947847|ref|ZP_08294779.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523471|gb|EGF50569.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 215

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +        +I   +       R      L ++    A +A   ++        
Sbjct: 98  RAGAVGFLLKDSSPEQILGAVRTAADGERPFSAAVLEQLVDATAMRAPSRQAPGT----- 152

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYA 240
             LT RE E    +++G  + EIA  LGI   TV  ++++++ K   + R   A+A A
Sbjct: 153 --LTEREREVAVLVAQGLANSEIADRLGIGAATVKTHVSTLLEKFKVRNRVQLAVAVA 208


>gi|298383718|ref|ZP_06993279.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298263322|gb|EFI06185.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 257

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 154 ILRDRLWEIGLLAA---YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           +  D+  E G+ A     +    ++  +       L+ RE E L  I +G +S EIA  L
Sbjct: 162 LSADQRPEQGIYATITQMERGEVETLSLSEEHRNILSEREKEILRCIRKGLSSKEIAATL 221

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            IS NTVN +  +I+ K +      A   A
Sbjct: 222 YISVNTVNRHRQNILEKLSVGNSIEACRAA 251


>gi|288920597|ref|ZP_06414902.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288348018|gb|EFC82290.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 770

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE +    ++ G ++ EIA  L +S  T   ++  I+ K    TR+   A+   N 
Sbjct: 710 PLTARERQVADLLARGLSNREIADTLKVSPRTAEAHVQQILNKLGLPTRARVAAWLAENR 769

Query: 245 I 245
           +
Sbjct: 770 L 770


>gi|270294378|ref|ZP_06200580.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275845|gb|EFA21705.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 204

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +T + +G T+  IA  L +S +TV  +  +I RK    + +G   YA+ N +
Sbjct: 135 LSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|255009628|ref|ZP_05281754.1| putative DNA-binding response regulator [Bacteroides fragilis
           3_1_12]
 gi|313147410|ref|ZP_07809603.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313136177|gb|EFR53537.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 202

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E +  + +G T+ EIA  L +S +TV  +  +I +K    + +G   YA+ 
Sbjct: 131 QEALSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKLQIHSAAGLTIYAIV 190

Query: 243 NNIV 246
           N +V
Sbjct: 191 NKLV 194


>gi|271969145|ref|YP_003343341.1| protein kinase [Streptosporangium roseum DSM 43021]
 gi|270512320|gb|ACZ90598.1| protein kinase [Streptosporangium roseum DSM 43021]
          Length = 824

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIG---LMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
               P+G   R   L    AR R+G   +  L+  G+ + +D+     L    Q++    
Sbjct: 693 GAVLPSGFGARMEEL-LQPARARLGDALVAQLWALGKEMSQDQAVRYALQGDDQSDAPLM 751

Query: 176 YDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              H        LTGRE E    I+ G ++  IA  L IS  T   ++A+I+ K    +R
Sbjct: 752 VGRHPVAAPLTTLTGREWEIAGLIARGLSNKAIADELVISPATAARHVANILAKLGFSSR 811

Query: 234 SGAIAYAVRNN 244
           +    + +  N
Sbjct: 812 TQVATWVIEQN 822


>gi|229489266|ref|ZP_04383132.1| protein kinase/ transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229324770|gb|EEN90525.1| protein kinase/ transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 777

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 78/212 (36%), Gaps = 13/212 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              +++ +   L  T+     +    +  GAS +L         + LD+ ++S W  + +
Sbjct: 567 PADEMMFQAFAL-GTLGLVSWLRGELD--GASDYLTRSL-----RILDAPMNSAWCIEPL 618

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +A +++D  +  +          +  +   +    G+   + +   + AR  +G    
Sbjct: 619 AWIAAAQRDWKHAAV--LLGAAAMYWQKVGGRLAGLPGLSVHHEAAA-ETARKAMGDGAF 675

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R        E    A  + +   +     G    LT RE +    +++G T+  IA
Sbjct: 676 DKSFRSGFAMSEGEAVAYALDKRSSVTTASSAEGP--HLTPREQQVAELVAQGLTNRAIA 733

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             L IS  T   ++  ++ K    +R+   A+
Sbjct: 734 NHLVISLRTAQGHVEHVLTKLGFTSRAQIAAW 765


>gi|221210811|ref|ZP_03583791.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD1]
 gi|221169767|gb|EEE02234.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD1]
          Length = 210

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 15/161 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           + P  LV  + + EK  +    +        PV         P              V  
Sbjct: 48  NLPACLVLDVRMPEKSGFDVQAELNARGATLPVIFVSGHGDIP------------MSVRA 95

Query: 140 IRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           ++ G +    K     +  +R+     LA  +    + +     +   LT RE E L  +
Sbjct: 96  LQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHAADQRHRELRERLAALTAREKEVLQGV 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK S +IA  L IS  TV+ + ASI  K    + +  + 
Sbjct: 156 VDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAALVR 196


>gi|262273261|ref|ZP_06051076.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
 gi|262222634|gb|EEY73944.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
          Length = 212

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +    K   LT ++ + L  +++G  + +IA  L +S  T+  ++ +I RK   K R+ A
Sbjct: 142 ESLMDKISSLTPQQYKVLNMLNDGLLNKQIAYELDVSEATIKAHMTAIFRKLGVKNRTQA 201

Query: 237 IA 238
           + 
Sbjct: 202 VI 203


>gi|218129321|ref|ZP_03458125.1| hypothetical protein BACEGG_00898 [Bacteroides eggerthii DSM 20697]
 gi|317475290|ref|ZP_07934556.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988498|gb|EEC54819.1| hypothetical protein BACEGG_00898 [Bacteroides eggerthii DSM 20697]
 gi|316908544|gb|EFV30232.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 204

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +T + +G T+  IA  L +S +TV  +  +I RK    + +G   YA+ N +
Sbjct: 135 LSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|251794573|ref|YP_003009304.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542199|gb|ACS99217.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2]
          Length = 682

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L+ RE E L  +  G+++ E+A  L +S  TV  ++A+I RK   K+R+  I
Sbjct: 624 LSRREREVLDRVILGRSNLELARDLCLSEVTVKKHLANIFRKLEVKSRTQLI 675


>gi|332359210|gb|EGJ37031.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332359828|gb|EGJ37642.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 199

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           +L   +    +  +V       L+ +E   L   + G ++ EIA  L +S  TV NY+++
Sbjct: 117 VLDGQKEYSPELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSA 176

Query: 224 IMRKTATKTRSGAIAYAVRNN 244
           I+ K   + R+ A+       
Sbjct: 177 ILTKLDAENRTEAVRIGQEKG 197


>gi|283782991|ref|YP_003373745.1| transcriptional regulator, LuxR family [Gardnerella vaginalis
           409-05]
 gi|298253351|ref|ZP_06977143.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
 gi|283441595|gb|ADB14061.1| transcriptional regulator, LuxR family [Gardnerella vaginalis
           409-05]
 gi|297532746|gb|EFH71632.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
          Length = 217

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ +E E +    +G +S EIA  L +  +TVN ++  I  K   K+R  A+A
Sbjct: 156 LSPQESEIMRLCKQGYSSKEIADQLNVKVSTVNTHLRRIYGKLQVKSRMQALA 208


>gi|218886969|ref|YP_002436290.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757923|gb|ACL08822.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 839

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            F L+ RE E    +++G +  EIA  L IS NTV  ++ +  +K  T +RS
Sbjct: 781 RFGLSPREDEVARLMADGLSYGEIAQHLCISLNTVKTHLKNAYQKVGTSSRS 832


>gi|89900824|ref|YP_523295.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345561|gb|ABD69764.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 212

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 35/60 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T R+ E L  + +G+++ EI+  L ++ +T  N++ +++R    K+R+  +  A R  
Sbjct: 145 QVTPRQAEVLALLLDGRSNKEISEALALTDDTTKNHVTALLRAFDVKSRTQLVLAASRQG 204


>gi|308371945|ref|ZP_07426771.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu004]
 gi|308373119|ref|ZP_07431080.2| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu005]
 gi|308334997|gb|EFP23848.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu004]
 gi|308338804|gb|EFP27655.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu005]
 gi|323720175|gb|EGB29278.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
          Length = 1124

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 1065 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 1122


>gi|297564113|ref|YP_003683086.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848562|gb|ADH70580.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 223

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 16/121 (13%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           +     + +    V ++   +  +   GR I  D L    ++               G +
Sbjct: 117 SSGARGFLAKDAPVDQLAGAIRRVHEGGRYIDTD-LAAAAMV---------------GGE 160

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L   S+G T   IA  L ++  TV NY+++ + KT    R  AI  A   
Sbjct: 161 SPLTDRETEVLRAASDGATVARIAAALHLTEGTVRNYLSNAIGKTGADNRMSAIRTAQDM 220

Query: 244 N 244
            
Sbjct: 221 G 221


>gi|260885074|ref|ZP_05896688.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260874602|gb|EEX81671.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
          Length = 254

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G ++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 189 LTAREVEVVHAIRLGLSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 240


>gi|260204619|ref|ZP_05772110.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            K85]
 gi|289574024|ref|ZP_06454251.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289538455|gb|EFD43033.1| transcriptional regulator [Mycobacterium tuberculosis K85]
          Length = 1159

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 1100 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 1157


>gi|271963218|ref|YP_003337414.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506393|gb|ACZ84671.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 197

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 53/169 (31%), Gaps = 18/169 (10%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTE--LFCPVFHTLPENITPPAGMDNRYCSLTF 135
           V    P  +V  + +   D        P    L    F          A     +     
Sbjct: 43  VRDHRPDVIVLDIEMPGMDGLTVAETLPGHAVLMLSSFGRPGYLRRALAAGVRGFIPKDA 102

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +   GR +  + +    ++A                +  LT RE + L 
Sbjct: 103 SADELATAIRKVSSGGRYLDPE-MAASAMMAG---------------ESPLTERERDALA 146

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             S G +  EIAV L ++  TV NY++S + K     R  AI  A    
Sbjct: 147 LASRGASVGEIAVSLHLTEGTVRNYLSSAITKLGASNRITAIHAAQEKG 195


>gi|91975755|ref|YP_568414.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91682211|gb|ABE38513.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
          Length = 318

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE+  L+W+  G    +IA  + IS  TV++++ +++RK   K RS A   A  
Sbjct: 238 PVGLSYREMVVLSWLMIGMADRDIAAEMFISERTVHSHVTALLRKLKVKRRSQAAIIAAL 297

Query: 243 NN 244
           N 
Sbjct: 298 NR 299


>gi|219669440|ref|YP_002459875.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219539700|gb|ACL21439.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 204

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 40/94 (42%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                 + F K  + L + +     L+    ++     V      +LT RE      + +
Sbjct: 102 GYFSKSMAFDKFEVYLHEVMEGKYRLSEALGSLLFERLVKKNSADDLTAREKIIYQMMRK 161

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           G T+ EIA  L IS NT  N+++SIM K    +R
Sbjct: 162 GYTNKEIAKQLSISTNTARNHVSSIMHKLNISSR 195


>gi|317405417|gb|EFV85730.1| hypothetical protein HMPREF0005_01568 [Achromobacter xylosoxidans
           C54]
          Length = 258

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 39/67 (58%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   L+  +++ L  +++G+++ EIA I+  S +TV + +  IM +   + R+ A+A 
Sbjct: 188 AAEKHGLSASDLKILGLLAQGRSNAEIAGIVHRSPHTVKDSVKKIMSRLGARRRAEAVAC 247

Query: 240 AVRNNIV 246
           A++  ++
Sbjct: 248 AIKAGLI 254


>gi|260186297|ref|ZP_05763771.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            CPHL_A]
 gi|289446953|ref|ZP_06436697.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289419911|gb|EFD17112.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
          Length = 1159

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 1100 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 1157


>gi|332886331|gb|EGK06575.1| hypothetical protein HMPREF9456_00449 [Dysgonomonas mossii DSM
           22836]
          Length = 218

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT  E E L  I+ G+T+ EIA    +S +T+  +  +I RK        A  YA+R
Sbjct: 148 DHILTSTEKEILKEIAIGRTTKEIAANRNLSFHTIITHRKNIFRKLEVNNVHEATKYAMR 207

Query: 243 NNIV 246
             ++
Sbjct: 208 AGLI 211


>gi|326902980|gb|EGE49913.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
          Length = 1158

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 1099 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 1156


>gi|256789441|ref|ZP_05527872.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces lividans TK24]
 gi|289773332|ref|ZP_06532710.1| AbsA2 [Streptomyces lividans TK24]
 gi|289703531|gb|EFD70960.1| AbsA2 [Streptomyces lividans TK24]
          Length = 220

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             +    +   LTGRE E L  + EG ++      L +S  TV  Y++ ++ K     R 
Sbjct: 145 RGEEARRRLAGLTGREREVLALLGEGLSNAAAGARLHMSEATVKTYVSRVLTKLDCDNRV 204

Query: 235 GAIAYAVRNNI 245
            A   A    +
Sbjct: 205 QAALLARDAGL 215


>gi|300772169|ref|ZP_07082039.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760472|gb|EFK57298.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 22/180 (12%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +++   P  L+  + +   D          E      H     I       + Y S   
Sbjct: 48  HVLNKQQPDLLILDLNMPGMDG---------ETIAVKVHEQYPCIKILVL--SMYSSPVL 96

Query: 136 DVARIRIGLMLLFPKGR--IILRDRLWEI--------GLLAAYQANMFKSYDVHWGKDFE 185
                 IG+    PK     +L D + EI         +    + N F S DV + K ++
Sbjct: 97  QRKLKEIGVHGYLPKDTSTKLLFDTIREICNGKPCFGSVSNNNEENKFLSSDV-FLKKYK 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I +  TS +IA  L IS  TV+ +  +++ K     ++G   +A+ +N+
Sbjct: 156 LTSRELEILRLIGQNFTSQQIAEKLFISMFTVDTHRKNMIYKLKVDKKNGLFQFAMSHNL 215


>gi|157850157|gb|ABV89904.1| acyl-homoserine lactone receptor [Burkholderia pyrrocinia]
          Length = 137

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGR 189
            AR   GL+ +      +    +  + L       L+    + F    +       LT R
Sbjct: 46  AARGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTAR 105

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNN 219
           E E L W +EGKT+ EI  IL IS  TV  
Sbjct: 106 EREVLCWTAEGKTACEIGQILSISERTVTF 135


>gi|296169094|ref|ZP_06850753.1| LuxR family DNA-binding response regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896214|gb|EFG75876.1| LuxR family DNA-binding response regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 223

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 7/138 (5%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L    F +    +       + Y         +   +  +     ++  D      L
Sbjct: 76  LRCLMLTSFTSDEAMLEAILAGASGYVVKDIKGMELAHAIKEVGAGKSLL--DNRAAAAL 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +A  +    +   +       LT +E   L  +SEG T+ +IA  + ++  TV NY++ +
Sbjct: 134 MAKLRGAAEREDPLS-----GLTEQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRL 188

Query: 225 MRKTATKTRSGAIAYAVR 242
           + K   + R+ A  +A +
Sbjct: 189 LAKLGMERRTQAAVFASK 206


>gi|226304303|ref|YP_002764261.1| serine/threonine protein kinase [Rhodococcus erythropolis PR4]
 gi|226183418|dbj|BAH31522.1| putative serine/threonine protein kinase [Rhodococcus erythropolis
            PR4]
          Length = 1100

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 180  WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             G     T RE+E    ++ G T+ EIA  L IS  T   ++  ++ K    +RS    +
Sbjct: 1030 AGPSVTPTKREIEVAGLVAAGLTNKEIAARLVISPRTAQGHVEHLLVKLGFTSRSQIAVW 1089


>gi|220910204|ref|YP_002485515.1| GAF modulated LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866815|gb|ACL47154.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 237

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 34/235 (14%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMR-MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +P+   L + +           + +  L EY  A+ + L  +D   + +   +       
Sbjct: 1   MPSLPTLFSAIAQAQDLQELRSQVLPRLGEYFVATRWGLFFFDQLPDSRFQPL------- 53

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTL---PENITPPAGMDNRYCSLTFDV---A 138
                + L+   ++  VL+   E   PV   L   P+         +    +   +    
Sbjct: 54  -----LNLALSLEHNPVLRYLVERHAPVHEGLVVSPQAWQLLCPRTDHRHVMAGPLVKHG 108

Query: 139 RIRIGLMLL-FPKGRIILRDRLWEIGLLAAYQ------ANMFKSYDVHWG--------KD 183
           ++  GL            RD L ++  L  +               +           + 
Sbjct: 109 KLVGGLGFTRSHTLAAFDRDNLADLSGLCLHLSTWIATGRSIPPSPLAANPPQAWANRRP 168

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             LT RE +    ++ GKT+  I   L I+ N+V   +  + +K     R+  IA
Sbjct: 169 QRLTRRETQIAQLVAMGKTNAAIGAELWITENSVKQALKRMFQKLQVSNRAEMIA 223


>gi|163751244|ref|ZP_02158472.1| DNA-binding response regulator, LuxR family protein [Shewanella
           benthica KT99]
 gi|161328958|gb|EDQ00032.1| DNA-binding response regulator, LuxR family protein [Shewanella
           benthica KT99]
          Length = 219

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 154 DLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|149925364|ref|ZP_01913628.1| two-component response regulator [Limnobacter sp. MED105]
 gi|149825481|gb|EDM84689.1| two-component response regulator [Limnobacter sp. MED105]
          Length = 231

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 147 LFPKGRIILRDRLWEIGLLAAY------QANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            +P+    L++ L E G+L          AN + S     G D  LT ++VE +   +EG
Sbjct: 120 TYPELLRALQNLLIEAGVLDEVPKGVEKAANEYHSNIYAPGSDKPLTWKQVEIMRKTAEG 179

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++ E+A  + IS +TV  +I  I  +   K +  A+
Sbjct: 180 LSAKEVAREMDISPDTVRGHIKEIFLRLGAKNKGQAV 216


>gi|119963006|ref|YP_946274.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119949865|gb|ABM08776.1| putative two-component system response regulator [Arthrobacter
           aurescens TC1]
          Length = 208

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 14/156 (8%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTEL----FCPVFHTLPENITPPAGMDNRYCSLTF 135
              P  ++  +A+         +++  +        VF T   +      +D        
Sbjct: 47  EHMPAVVLMDLAMGAGMDGIEAIKQLRQRNPKQAVIVFTTYDSDADIVRAVDAGA----- 101

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                 +       +    +R  +    +++A  A+    +      D  LT RE E L+
Sbjct: 102 ---MGYLLKDAAPEEIFAAVRGAVQGKSVMSAPVASRL--FQQLRNPDEILTPREAELLS 156

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            ++EG ++ ++   L IS  TV  ++A I  K   +
Sbjct: 157 LLTEGLSNRDLGKRLFISEATVKTHLAHIYAKLGVE 192


>gi|56695084|ref|YP_165431.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56676821|gb|AAV93487.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 204

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 13/166 (7%)

Query: 83  PFDLV----RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           PFDL+        ++  D     ++   +    +      N      +D         V 
Sbjct: 46  PFDLILLDFNMPGMNGLDGLRAAIRHAPDTPVALLSGSAPNRVAQEAVDAGAAGF---VP 102

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           +      LL     +I  +      +L A             G    L+ RE + L  + 
Sbjct: 103 KTLAAKSLLHAVRFMIAGEVFVPSTVLQA------PEAPSDGGLTATLSRREKQVLGGLC 156

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            G  + EIA  L +   T+  ++ ++ +K   K R+ A   A    
Sbjct: 157 RGLPNKEIARELDLQEVTIKLHVRTLCKKLNAKNRTQAAMIARDAG 202


>gi|77457409|ref|YP_346914.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77381412|gb|ABA72925.1| putative regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLNVRTRTQAA 204


>gi|15840814|ref|NP_335851.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            CDC1551]
 gi|13881010|gb|AAK45665.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis
            CDC1551]
          Length = 1159

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 1100 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 1157


>gi|15608498|ref|NP_215874.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv]
 gi|148661147|ref|YP_001282670.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|167969108|ref|ZP_02551385.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|215403206|ref|ZP_03415387.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            02_1987]
 gi|215411003|ref|ZP_03419811.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            94_M4241A]
 gi|215426686|ref|ZP_03424605.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            T92]
 gi|215430244|ref|ZP_03428163.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            EAS054]
 gi|215445540|ref|ZP_03432292.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            T85]
 gi|260200414|ref|ZP_05767905.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            T46]
 gi|289442801|ref|ZP_06432545.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289745110|ref|ZP_06504488.1| transcriptional regulatory protein [Mycobacterium tuberculosis
            02_1987]
 gi|289749914|ref|ZP_06509292.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289753440|ref|ZP_06512818.1| transcriptional regulatory protein [Mycobacterium tuberculosis
            EAS054]
 gi|289757463|ref|ZP_06516841.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|294994916|ref|ZP_06800607.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            210]
 gi|298524865|ref|ZP_07012274.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306784088|ref|ZP_07422410.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu003]
 gi|306803061|ref|ZP_07439729.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu008]
 gi|306971645|ref|ZP_07484306.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu010]
 gi|307079357|ref|ZP_07488527.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu011]
 gi|307083922|ref|ZP_07493035.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu012]
 gi|1419061|emb|CAA99963.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
            tuberculosis H37Rv]
 gi|148505299|gb|ABQ73108.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
            H37Ra]
 gi|289415720|gb|EFD12960.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289685638|gb|EFD53126.1| transcriptional regulatory protein [Mycobacterium tuberculosis
            02_1987]
 gi|289690501|gb|EFD57930.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289694027|gb|EFD61456.1| transcriptional regulatory protein [Mycobacterium tuberculosis
            EAS054]
 gi|289713027|gb|EFD77039.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|298494659|gb|EFI29953.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308331157|gb|EFP20008.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu003]
 gi|308350279|gb|EFP39130.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu008]
 gi|308358872|gb|EFP47723.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu010]
 gi|308362809|gb|EFP51660.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu011]
 gi|308366456|gb|EFP55307.1| putative transcriptional regulator, LuxR family [Mycobacterium
            tuberculosis SUMu012]
          Length = 1159

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 1100 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 1157


>gi|330504010|ref|YP_004380879.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328918296|gb|AEB59127.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
          Length = 203

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT R++E L  ++EG  +  I+  LG++ +TV  ++ ++    A  TR+  ++ 
Sbjct: 137 PSSPSPLTPRQLEILRLLAEGLPNKVISRQLGLAEDTVKTHLKALFETLAVHTRTACVSA 196

Query: 240 AVRNN 244
           A +  
Sbjct: 197 ARQRG 201


>gi|257791854|ref|YP_003182460.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|317489859|ref|ZP_07948352.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325829841|ref|ZP_08163299.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|257475751|gb|ACV56071.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|316911014|gb|EFV32630.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325488008|gb|EGC90445.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 516

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----VHWGKDFELTGRE 190
           F +  + +G +           D L + G+    + +   +      V     + LT RE
Sbjct: 403 FCIVVVHLGFVAWQQACSTDDPDALQDAGMRNEGETDTLHALQHERIVTLANGYALTKRE 462

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            E L ++S G  S  I+  L IS NT   +I +I RK    +R
Sbjct: 463 REILQYLSLGYGSVYISKTLFISDNTARTHIRNIYRKLDVSSR 505


>gi|221199714|ref|ZP_03572757.1| response regulator, LuxR family [Burkholderia multivorans CGD2M]
 gi|221208681|ref|ZP_03581681.1| response regulator, LuxR family [Burkholderia multivorans CGD2]
 gi|221171492|gb|EEE03939.1| response regulator, LuxR family [Burkholderia multivorans CGD2]
 gi|221179953|gb|EEE12357.1| response regulator, LuxR family [Burkholderia multivorans CGD2M]
          Length = 230

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             F            LT R+ + L+ +  G  +  IA  L ++  TV+N+I +++R    
Sbjct: 135 RCFPDPGSECDPLQRLTNRQRDVLSLLCVGYPTKVIASTLRLAEGTVDNHIGNVLRVLNA 194

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ AI  AV    +
Sbjct: 195 HNRAHAIYKAVALGYL 210


>gi|221639297|ref|YP_002525559.1| response regulator [Rhodobacter sphaeroides KD131]
 gi|221160078|gb|ACM01058.1| Response regulator [Rhodobacter sphaeroides KD131]
          Length = 226

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++ + L  I EG+ + +IA  L I+  TV  ++ +IMRK   ++R+ A+
Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210


>gi|207739795|ref|YP_002258188.1| hypothetical protein RSIPO_04498 [Ralstonia solanacearum IPO1609]
 gi|206593177|emb|CAQ60083.1| hypothetical protein RSIPO_04498 [Ralstonia solanacearum IPO1609]
          Length = 297

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   ++ R+ E L  +S G +   +  +LGIS  TV  +  ++ R+   + +S A+
Sbjct: 144 AEAAQRLNVSQRQYEVLVLLSRGHSVKGVGRLLGISEATVKTHACTLYRRLNVRNKSEAV 203

Query: 238 AYAVRNNI 245
             A+R  I
Sbjct: 204 YAAMRLGI 211


>gi|17988034|ref|NP_540668.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62289171|ref|YP_220964.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|17983780|gb|AAL52932.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62195303|gb|AAX73603.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str.
           9-941]
          Length = 230

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 165 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 216


>gi|29347591|ref|NP_811094.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572052|ref|ZP_04849456.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|29339492|gb|AAO77288.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838232|gb|EES66319.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 257

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 154 ILRDRLWEIGLLAA---YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           +  D+  E G+ A     +    ++  +       L+ RE E L  I +G +S EIA  L
Sbjct: 162 LSADQRPEQGIYATITQMERGEVETLSLSEEHRNILSEREKEILRCIRKGLSSKEIAATL 221

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            IS NTVN +  +I+ K +      A   A
Sbjct: 222 YISVNTVNRHRQNILEKLSVGNSIEACRAA 251


>gi|307727191|ref|YP_003910404.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587716|gb|ADN61113.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 210

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 5/135 (3%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--RLWEIGLL---AAYQAN 171
           P        + N    ++  +     G +       ++L    RL E G        +  
Sbjct: 74  PSLPLLVLSIHNEAQVVSRALRAGATGYVTKDSNPDVLLAAIRRLAEGGRFIDPKLVEGI 133

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +F++Y         L+ RE + L  ++ GK+ +EIA    +S  T++ +   +M+K    
Sbjct: 134 VFETYSGDAPPHEILSDREFQVLQMLALGKSLNEIAEAFALSAKTISTHKMRLMQKLGLA 193

Query: 232 TRSGAIAYAVRNNIV 246
             +  I YA+R+ +V
Sbjct: 194 NNADLIRYAIRHGLV 208


>gi|254231608|ref|ZP_04924935.1| hypothetical protein TBCG_01339 [Mycobacterium tuberculosis C]
 gi|124600667|gb|EAY59677.1| hypothetical protein TBCG_01339 [Mycobacterium tuberculosis C]
          Length = 1159

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 1100 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 1157


>gi|312959315|ref|ZP_07773832.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311286032|gb|EFQ64596.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAA 204


>gi|254823398|ref|ZP_05228399.1| TPR repeat-containing protein [Mycobacterium intracellulare ATCC
           13950]
          Length = 885

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
               LA++      + +    +    +GRE + +  ++ G ++ +IA  L IS  TV  +
Sbjct: 778 RAHALASHCELHTPAVESA-ARPLPFSGRERQIVMLVAAGLSNRQIADELVISVRTVEGH 836

Query: 221 IASIMRKTATKTRSGAIAYAVR 242
           +  +  K    TR   I    R
Sbjct: 837 LYRLFAKLGINTREQLICLMRR 858


>gi|91790134|ref|YP_551086.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91699359|gb|ABE46188.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 214

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 8/146 (5%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
               +   L   +   L   +       + Y +     A++   +  +   G  I  +  
Sbjct: 71  AEKPKLRILVLSMHQELQYAVRAIKSGASGYLTKESAPAQLEQAIRKIAAGGAFISAE-- 128

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
                  A Q  +             L+ RE E    +  G +  EIA  L +S  TV+ 
Sbjct: 129 ------VAEQLALGAMPGSEVAAHGSLSDREFEVFRLLVAGVSVTEIAGRLNLSVKTVST 182

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245
           + A++M K     +S  I YA+R+ +
Sbjct: 183 HKANLMHKMGLHNQSELIRYAMRHGL 208


>gi|70728620|ref|YP_258369.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342919|gb|AAY90525.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 216

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAA 204


>gi|182439864|ref|YP_001827583.1| LAL subfamily transcriptional regulator [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326780528|ref|ZP_08239793.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
 gi|50058190|dbj|BAD27468.1| putative transcriptional regulator, similar to LAL subfamily
           [Streptomyces griseus]
 gi|178468380|dbj|BAG22900.1| putative LAL subfamily transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660861|gb|EGE45707.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
          Length = 953

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 71/249 (28%), Gaps = 41/249 (16%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
            Q + F+  +  R  L      ++  +   +R + L +  G       R   F       
Sbjct: 710 PQFSIFLPFMIARGQLRIAQGEIESGMGELLRTHELLQEWG------ARCPAFSPATEAV 763

Query: 77  IVSS------DWPFDLVRCMALSEKDKYYNV--------------------LQRPTELFC 110
                     +      + + ++                            L++  ELF 
Sbjct: 764 HALCALGRREEAHALAEKQLEVARAFGSDREVALALCARARATGGATHLEDLEQAVELFS 823

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR---IILRDRLWEIGLLAA 167
                L E             +     AR R+        G     + +    E+ ++  
Sbjct: 824 GTADALDECAALIQYGTALRIAGQPSAARRRLRAASDLADGMGATALSKQARQELAVMG- 882

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                 +  +        LT RE       +EGK + EIA +L ++  TV  +++ + RK
Sbjct: 883 -----VRVRESARTGVSGLTPREHRVCLLAAEGKRNQEIAHMLFVTVKTVEWHLSQVYRK 937

Query: 228 TATKTRSGA 236
               +R   
Sbjct: 938 LGVASRIEL 946


>gi|256788073|ref|ZP_05526504.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 19/157 (12%)

Query: 91  ALSEKDKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            LS  D    + +R      L    F                +      V  +   +  +
Sbjct: 80  GLSGLDAAAELRERAPGCRVLILTTFGRPGYLRRAMEAGAAGFLVKDGPVEELAGAIRRV 139

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++                    +          LT RE + L   ++G T  +IA
Sbjct: 140 LGGETVVDPAL----------------AAAALSAGPSPLTARECDVLRASADGATVADIA 183

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L +S +TV NY+++ + KT T+ R+ A+  A    
Sbjct: 184 GALHLSESTVRNYLSAAIGKTGTRNRAEALRAARGQG 220


>gi|256421177|ref|YP_003121830.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036085|gb|ACU59629.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 211

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+EG+T+ +IA  L +S  TV  +  S+++K   K  +  I  AV   +
Sbjct: 151 LTKREKEILQLIAEGQTTPDIAATLHLSPLTVETHRKSLLQKFEVKNVALLIRTAVEQKL 210

Query: 246 V 246
           +
Sbjct: 211 L 211


>gi|256379380|ref|YP_003103040.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923683|gb|ACU39194.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + ++   +     A              ELT RE E L  ++ G+ +  IA  L +S  T
Sbjct: 127 EAIFSPAIAGRLLAYFGAPAQPRPETFPELTSREREVLRLMAGGEGNGAIARGLVLSPKT 186

Query: 217 VNNYIASIMRKTAT 230
           V N++++I+RK   
Sbjct: 187 VRNHVSNILRKLHV 200


>gi|145296375|ref|YP_001139196.1| hypothetical protein cgR_2289 [Corynebacterium glutamicum R]
 gi|140846295|dbj|BAF55294.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 895

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           F +   + +D   +  +  A +            +   LT +E E    +S G  + E+A
Sbjct: 796 FARAASLFQDMGADAMVTLANRERRVGGLGQRSEQAGGLTPQEYEIARLVSSGHANREVA 855

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAI 237
             L +S  TV  ++  + +K   + R    
Sbjct: 856 QELFLSPKTVEYHLTRVYKKLGIRNRMELA 885


>gi|121637289|ref|YP_977512.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Pasteur 1173P2]
 gi|224989763|ref|YP_002644450.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Tokyo 172]
 gi|121492936|emb|CAL71407.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Pasteur 1173P2]
 gi|224772876|dbj|BAH25682.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG
            str. Tokyo 172]
          Length = 1159

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 1100 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 1157


>gi|19553606|ref|NP_601608.1| DNA-binding HTH domain-containing protein [Corynebacterium
           glutamicum ATCC 13032]
          Length = 873

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           F +   + +D   +  +  A +            +   LT +E E    +S G  + E+A
Sbjct: 774 FARAASLFQDMGADAMVTLANRERRVGGLGQRSEQAGGLTPQEYEIARLVSSGHANREVA 833

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAI 237
             L +S  TV  ++  + +K   + R    
Sbjct: 834 QELFLSPKTVEYHLTRVYKKLGIRNRMELA 863


>gi|326332433|ref|ZP_08198709.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325949746|gb|EGD41810.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 222

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            + A      +S          LT  E   L  I EG T+ +I   + ++  TV NY++S
Sbjct: 140 AVTAQVLERIRSGPKTNSVFENLTNHERRILELIGEGLTNRQIGKEMHLAEKTVKNYVSS 199

Query: 224 IMRKTATKTRSGAIA 238
           ++ K   ++R+ A  
Sbjct: 200 LLAKLGLESRTQAAI 214


>gi|320093927|ref|ZP_08025762.1| LuxR family DNA-binding response regulator [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979139|gb|EFW10647.1| LuxR family DNA-binding response regulator [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 215

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A
Sbjct: 144 HEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAA 203

Query: 239 Y 239
           +
Sbjct: 204 W 204


>gi|269217550|ref|ZP_06161404.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212485|gb|EEZ78825.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 202

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L   S+G T+ +++  L +S+ TV NY++S + KT  +TR+ A+  A  N 
Sbjct: 141 PLTEREQDVLRATSDGGTTADVSRSLFLSQGTVRNYLSSAIHKTGARTRAEAVVIARDNG 200


>gi|302527637|ref|ZP_07279979.1| predicted protein [Streptomyces sp. AA4]
 gi|302436532|gb|EFL08348.1| predicted protein [Streptomyces sp. AA4]
          Length = 316

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE++ +  +S G +++ I+  LGI+  TV +++ S + K     R+    +A+ ++
Sbjct: 245 PLTGRELDVVGLVSRGWSNERISSALGITVRTVRSHVESSLVKLDCPNRTALARHALEHD 304

Query: 245 I 245
           +
Sbjct: 305 L 305


>gi|41407973|ref|NP_960809.1| hypothetical protein MAP1875c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396327|gb|AAS04192.1| hypothetical protein MAP_1875c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 901

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 3/127 (2%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +         ++  L                  R   R + +E    A   A+ ++ +  
Sbjct: 748 DGDLLDAAAQKFADLGALACAADAAAQAAGEHARRGDRGKKFESSAWAHALASRYELHTP 807

Query: 179 H---WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +    +GRE + +  ++ G ++ EIA  L IS  TV  ++  +  K    +R  
Sbjct: 808 AVEAAARPLPFSGRERQIVNLVAAGLSNREIADRLVISVRTVEGHLYRLFTKLGINSREQ 867

Query: 236 AIAYAVR 242
                 R
Sbjct: 868 LTLLVAR 874


>gi|62391250|ref|YP_226652.1| LuxR family regulatory protein [Corynebacterium glutamicum ATCC
           13032]
 gi|21325179|dbj|BAB99801.1| DNA-binding HTH domains [Corynebacterium glutamicum ATCC 13032]
 gi|41326590|emb|CAF21072.1| Bacterial regulatory protein, LuxR family [Corynebacterium
           glutamicum ATCC 13032]
          Length = 895

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           F +   + +D   +  +  A +            +   LT +E E    +S G  + E+A
Sbjct: 796 FARAASLFQDMGADAMVTLANRERRVGGLGQRSEQAGGLTPQEYEIARLVSSGHANREVA 855

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAI 237
             L +S  TV  ++  + +K   + R    
Sbjct: 856 QELFLSPKTVEYHLTRVYKKLGIRNRMELA 885


>gi|91976846|ref|YP_569505.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91683302|gb|ABE39604.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
          Length = 248

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 163 GLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            L A+           H  +D    ELT  ++E L++++ G ++ +IA   G+S NTV +
Sbjct: 155 ALAASQARPSNLPMPRHRPEDPALDELTRPQIELLSYLANGMSNRQIAKERGMSINTVKS 214

Query: 220 YIASIMRKTATKTRSGAIAYAVRN 243
            +A++++K     R+ A  +AVRN
Sbjct: 215 QVATVIQKLNVTNRTQAALFAVRN 238


>gi|330809485|ref|YP_004353947.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377593|gb|AEA68943.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 223

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 158 LTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 212


>gi|302035956|ref|YP_003796278.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300604020|emb|CBK40352.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 212

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 3/166 (1%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
            P+DL+  + ++  DK+   + + T+L  P    L  ++ P      R           +
Sbjct: 48  QPWDLM-ILDIALPDKHGLEVLKETKLLQPSLPVLMLSLYPEKEFAMRAIKAGASGYLTK 106

Query: 142 IGLM-LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                 L      +L+   +    LA   A++ ++  V       L+ RE++ L  + +G
Sbjct: 107 QSAPSELLAAVLRVLQGGRYITAALAEQMASVIET-GVDGSLHARLSDRELQVLRLLGQG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K+   IA  L +S  T++ Y A I+ K + ++    I YA+   ++
Sbjct: 166 KSVSVIAEELRLSVKTISTYRARILEKLSCESTGELIRYAIEARLI 211


>gi|254775034|ref|ZP_05216550.1| TPR repeat-containing protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 891

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 3/127 (2%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +         ++  L                  R   R + +E    A   A+ ++ +  
Sbjct: 738 DGDLLDAAAQKFADLGALACAADAAAQAAGEHARRGDRGKKFESSAWAHALASRYELHTP 797

Query: 179 H---WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +    +GRE + +  ++ G ++ EIA  L IS  TV  ++  +  K    +R  
Sbjct: 798 AVEAAARPLPFSGRERQIVNLVAAGLSNREIADRLVISVRTVEGHLYRLFTKLGINSREQ 857

Query: 236 AIAYAVR 242
                 R
Sbjct: 858 LTLLVAR 864


>gi|226307953|ref|YP_002767913.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226187070|dbj|BAH35174.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 212

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D       EL+ +E      I EG T+ EI   L ++  TV NY+  ++ K   + R+
Sbjct: 139 RSDRTADPLAELSDQERAVFDLIGEGLTNREIGARLFLAEKTVKNYVTRLLSKLGMQRRT 198

Query: 235 GAIAYA--VRNN 244
            A   A  +R+ 
Sbjct: 199 QAAVLATEIRSG 210


>gi|197335562|ref|YP_002157169.1| two-component response regulator [Vibrio fischeri MJ11]
 gi|197317052|gb|ACH66499.1| two-component response regulator [Vibrio fischeri MJ11]
          Length = 209

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D    K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+
Sbjct: 139 ACDDLATKIAALTPQQYKVLGMLSDGLLNKQIAYDLEVSEATIKAHMTAIFRKLGVKNRT 198

Query: 235 GAIA 238
            A+ 
Sbjct: 199 QAVI 202


>gi|229495080|ref|ZP_04388826.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis
           SK121]
 gi|3319301|gb|AAC26219.1| CprR [Rhodococcus sp. NO1-1]
 gi|229318011|gb|EEN83886.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis
           SK121]
          Length = 212

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D       EL+ +E      I EG T+ EI   L ++  TV NY+  ++ K   + R+
Sbjct: 139 RSDRTADPLAELSDQERAVFDLIGEGLTNREIGARLFLAEKTVKNYVTRLLSKLGMQRRT 198

Query: 235 GAIAYA--VRNN 244
            A   A  +R+ 
Sbjct: 199 QAAVLATEIRSG 210


>gi|74318588|ref|YP_316328.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058083|gb|AAZ98523.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 224

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++ D    +   LT R++E    +++G  +  IA  L +S +TV  +IA+I R  +   R
Sbjct: 151 RTADFDALQHSGLTARQLEVARLLAQGCANKAIAGSLAMSESTVKVHIAAIFRALSVTNR 210

Query: 234 SGAIAYAVRN 243
           + A+  A++ 
Sbjct: 211 TEAV-LAIQR 219


>gi|116050317|ref|YP_790866.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585538|gb|ABJ11553.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 213

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 77/216 (35%), Gaps = 21/216 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +P+   L AR+I  D    +   +  +         +       +  +L S VS + P  
Sbjct: 1   MPSTRSLPARVIVADDYPLFRDGLRRVVRRYLPQAAVSEAGSFDEVLRLASSVSPEPPAL 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-------NRYCSLTFDVA 138
            +  + L         ++R    +      +   +  P  +D       + Y   + +  
Sbjct: 61  FLLDLLLPG-FAASQSIERLRRAYRHSAIVIVSMLDDPRLVDEVLAAGADGYLGKSLEAG 119

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   L  L     ++   RL      ++ Q  +  +          LT R+   L  I+
Sbjct: 120 EIGTALQTLGSGEPVV---RLRGGSSASSRQRALLDA----------LTPRQQAVLRLIA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +G ++ EI   L IS  TV  +++S++R     TR+
Sbjct: 167 DGLSNKEIGRALSISPFTVRVHVSSLLRALEVNTRT 202


>gi|307308177|ref|ZP_07587892.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|307316897|ref|ZP_07596339.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306897519|gb|EFN28263.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306901380|gb|EFN31985.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 211

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S D    +   LT RE E    I  G ++  IA  LG S  TV  ++ +I RK     R+
Sbjct: 137 SNDAPLERFSLLTPREREISALICGGLSNRMIASRLGTSEGTVGIHLHNIFRKLDISNRA 196

Query: 235 GAIA 238
              A
Sbjct: 197 TLAA 200


>gi|304408549|ref|ZP_07390170.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307305377|ref|ZP_07585125.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304352370|gb|EFM16767.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306911680|gb|EFN42105.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 214

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I EG+ + +IA  L I   TV  +  ++MRK      +  + +  R  +
Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMHWVQRLGL 214


>gi|160891075|ref|ZP_02072078.1| hypothetical protein BACUNI_03522 [Bacteroides uniformis ATCC 8492]
 gi|317480984|ref|ZP_07940064.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|156859296|gb|EDO52727.1| hypothetical protein BACUNI_03522 [Bacteroides uniformis ATCC 8492]
 gi|316902877|gb|EFV24751.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 204

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +T + +G T+  IA  L +S +TV  +  +I RK    + +G   YA+ N +
Sbjct: 135 LSQREKEIITCVVKGMTNKAIADKLYLSIHTVITHRRNIARKLQIHSPAGLTIYAIVNKL 194

Query: 246 V 246
           V
Sbjct: 195 V 195


>gi|86739704|ref|YP_480104.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86566566|gb|ABD10375.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 814

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +  LT RE +    ++ G ++ EIA  L I++ T   ++  I+ K    +R+  +A+
Sbjct: 712 EPEVPLTPRERQVADLVARGLSNKEIASYLVIAQRTAEGHVERILGKLGFTSRAQIVAW 770


>gi|31792554|ref|NP_855047.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 gi|31618143|emb|CAD94254.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
            AF2122/97]
          Length = 1159

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 1100 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 1157


>gi|46202761|ref|ZP_00052658.2| COG2202: FOG: PAS/PAC domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 778

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 72/208 (34%), Gaps = 17/208 (8%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           +T + GA  +L+      ++  +  +  + +   +      +          +P  +   
Sbjct: 568 VTGHTGARVYLVAEDGAARQGLIALLQPAGYEMQI---FDNAAALAEVAASLQPGCVVLD 624

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDV-----ARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
           +    P+++T    +     +L   V       + +G+  +       L      + LL 
Sbjct: 625 IEAAGPDSLTVARSLKAERLNLPVLVLGSSHGDVGVGVRAMKAGAVDYLEKPWQPMALLT 684

Query: 167 AYQA---------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           A  A            +++D    +   L+ RE E L  +  G T+  I   LG+S  TV
Sbjct: 685 AVAATLADLRTDTERSRAHDETRARIAALSAREREVLEGLLAGGTNKTIGRALGLSPRTV 744

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + + +M     +T   A+  A    +
Sbjct: 745 EIHRSHVMEILGARTLPEAVLMAAEAGV 772


>gi|332669837|ref|YP_004452845.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338875|gb|AEE45458.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 222

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 11/130 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L +        D     L   V R+ +G  +L P              L+AA  A 
Sbjct: 93  VLAALRQGAAGFLLKDTPPPDLVAAVRRVALGEPMLSPS---------VTSQLIAAVTAA 143

Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                     +     LT RE E    +  G ++ EIA  L +   TV  ++ +++ K  
Sbjct: 144 PVPDRPRERARALLATLTEREREVAEAVGAGMSNAEIARTLHLGVATVKTHVGNVLAKLD 203

Query: 230 TKTRSGAIAY 239
              R     +
Sbjct: 204 ATNRVQIARW 213


>gi|311895197|dbj|BAJ27605.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 9/150 (6%)

Query: 99  YNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
             VL+   E    VF TL ++             Y        +I  G+  +     I+ 
Sbjct: 75  SQVLRLTPETGVLVFSTLDDDKAVAAAFRAGARGYLVKRATADQIVRGIHAVGAGEAILD 134

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R     +G L      M            +L+ RE E L  ++ G+++  IA  L ++  
Sbjct: 135 RTIAARLGTL------MGTGSRPRSYPFPQLSDREREVLEHLAAGRSNTVIARELALASK 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TV+N ++ I+ K     R+ A+  A    +
Sbjct: 189 TVSNRVSGILGKLGVADRAQALVLARDAGL 218


>gi|297190998|ref|ZP_06908396.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297150714|gb|EDY65376.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 226

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 3/176 (1%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E+    +V  D    ++  +A +E+ +       P  +    FH   + +       + +
Sbjct: 48  ERLGPDVVLMDIRMPVMDGLAATERLRRRPHA--PEVVVLTTFHADEQVLRAMRAGASGF 105

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  A I   +  +     ++      ++    A      +       +   L GRE
Sbjct: 106 VLKDTPPAEIVAAVRRVAAGDPVLSPAVTRQLMTHVAGSGADTRRA-AALRRLEPLAGRE 164

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E    +  G ++ EIA  L +S  TV  +++ I+ K     R      A    ++
Sbjct: 165 REVALAVGRGSSNAEIAAALYMSVATVKTHVSRILAKLDLNNRVQIALLAHDAGLL 220


>gi|261324311|ref|ZP_05963508.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261300291|gb|EEY03788.1| two component transcriptional regulator [Brucella neotomae 5K33]
          Length = 161

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 96  LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 147


>gi|77463440|ref|YP_352944.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides 2.4.1]
 gi|16904149|gb|AAL30775.1|AF435819_1 response regulator [Rhodobacter sphaeroides]
 gi|77387858|gb|ABA79043.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 226

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++ + L  I EG+ + +IA  L I+  TV  ++ +IMRK   ++R+ A+
Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210


>gi|329941519|ref|ZP_08290784.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
 gi|329299236|gb|EGG43136.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
          Length = 947

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 19/140 (13%)

Query: 116 LPENITPP---AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--- 169
            PE   P    A  D       F+ A+ R+       + R I   R      LA +Q   
Sbjct: 773 DPELAEPYFQAALADATGEQWPFERAQTRLDYGEWLRRQRRIAEARPLLSAALATFQRLG 832

Query: 170 -------------ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                        A   ++  V      EL+ ++ + +   + G T+ EI   L +S  T
Sbjct: 833 ARPWIERAQTELRAAGIEASSVVPDAFVELSPQQQQIVRLAARGLTNREIGEKLFLSPRT 892

Query: 217 VNNYIASIMRKTATKTRSGA 236
           V +++  +  K     RS  
Sbjct: 893 VGSHLYRVFPKLGITARSQL 912


>gi|312138551|ref|YP_004005887.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311887890|emb|CBH47202.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 245

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 5/154 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR    +  +   ++     +L C +  +  ++      +          V +  +G  L
Sbjct: 90  VRLPDGNGVELCRDLRTVLPDLRCLMLTSFADDEALFDAVMAGASGF---VLKQILGTDL 146

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     +     L +    AA    M    +       EL+ +E      I +G T+ EI
Sbjct: 147 ISAVRTVGAGGSLLDSRATAALMQRM--RSERTADPLAELSDQERAVFDLIGQGLTNREI 204

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           A  L ++  T+ NY++ ++ K   + R+ A   A
Sbjct: 205 AERLFLAEKTIKNYVSRLLAKLGMQRRTQAAVLA 238


>gi|237800190|ref|ZP_04588651.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023047|gb|EGI03104.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 135

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 72  LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAA 123


>gi|254284313|ref|ZP_04959281.1| transcriptional regulator, LuxR family protein [gamma
           proteobacterium NOR51-B]
 gi|219680516|gb|EED36865.1| transcriptional regulator, LuxR family protein [gamma
           proteobacterium NOR51-B]
          Length = 248

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           K F L+ RE + +  + +G +S  IA  L IS  TVNN++ S+  K     R+  I
Sbjct: 188 KRFGLSRREKQVVELLRQGLSSLHIADQLNISARTVNNHLRSVYDKCGVHNRTALI 243


>gi|160914272|ref|ZP_02076493.1| hypothetical protein EUBDOL_00282 [Eubacterium dolichum DSM 3991]
 gi|158433899|gb|EDP12188.1| hypothetical protein EUBDOL_00282 [Eubacterium dolichum DSM 3991]
          Length = 64

 Score = 73.1 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +T RE E    +    ++ EIA  + IS  TV N+I+++M K   K R+ A+ 
Sbjct: 1   MTQRESEVFKLLIANYSTKEIAQRMNISDKTVRNHISNVMLKLGVKGRAQAVV 53


>gi|297562542|ref|YP_003681516.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846990|gb|ADH69010.1| transcriptional regulator, LuxR family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 840

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  LT RE+E    +S G+++ EIA  L I+ +T   ++A+I RK    +R+   ++ V
Sbjct: 775 PEERLTPRELEVALLVSRGRSNPEIARELFITPSTAARHVANINRKMGFHSRTQIASW-V 833

Query: 242 RNN 244
           R++
Sbjct: 834 RHH 836


>gi|260462954|ref|ZP_05811158.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031348|gb|EEW32620.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 257

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 1/128 (0%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            PV      +          Y +  +  + +R  +  +     +I          LA   
Sbjct: 114 APVAILADTDELEQILRALGYGAKAYIPSSLRFEIC-VEAINFVIAGGTFVPASSLAGLH 172

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             +    ++        T R+ + +  +  GK +  IA  L +  +TV  +I +IM+K  
Sbjct: 173 KTIEADVEMPRPMASVFTERQEDVVQALRRGKANKIIAHELNLRESTVKVHIRNIMKKLK 232

Query: 230 TKTRSGAI 237
              R+ A+
Sbjct: 233 ATNRTEAV 240


>gi|190890296|ref|YP_001976838.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695575|gb|ACE89660.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 255

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + T RE + L  +  G ++  IA  L +S +TV  ++  IMRK   + R+  +A  ++ 
Sbjct: 187 DFTPREADILAELQSGCSNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVARLIQR 245


>gi|118466286|ref|YP_881565.1| TPR repeat-containing protein [Mycobacterium avium 104]
 gi|118167573|gb|ABK68470.1| tetratricopeptide repeat family protein [Mycobacterium avium 104]
          Length = 891

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 3/127 (2%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +         ++  L                  R   R + +E    A   A+ ++ +  
Sbjct: 738 DGDLLDAAAQQFADLGALACAADAAAQAAGEHARRGDRGKKFESSAWAHALASRYELHTP 797

Query: 179 H---WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +    +GRE + +  ++ G ++ EIA  L IS  TV  ++  +  K    +R  
Sbjct: 798 AVEAAARPLPFSGRERQIVNLVAAGLSNREIADRLVISVRTVEGHLYRLFTKLGINSREQ 857

Query: 236 AIAYAVR 242
                 R
Sbjct: 858 LTLLVAR 864


>gi|86741458|ref|YP_481858.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86568320|gb|ABD12129.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 306

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE   L  ++ G ++ EIA  L ++  TV  Y+   MRK     R  A  YA R+
Sbjct: 219 LGLTSRERAVLGQLARGLSNAEIACELALAEATVKRYLTGAMRKIGQPDRLRAGLYAYRH 278

Query: 244 NIV 246
            ++
Sbjct: 279 GLL 281


>gi|256378051|ref|YP_003101711.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922354|gb|ACU37865.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++    ++ G T+ EIA  L I+ +TV +++ S+ +K   + R+        + +
Sbjct: 156 LTARELDVALAVARGGTNAEIAQRLSITLSTVKSHLTSVQQKLGARNRTEVAIRMWEDGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|160875358|ref|YP_001554674.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|160860880|gb|ABX49414.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315267557|gb|ADT94410.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 214

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I EG+ + +IA  L I   TV  +  ++MRK      +  + +  R  +
Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMHWVQRLGL 214


>gi|332558318|ref|ZP_08412640.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides WS8N]
 gi|332276030|gb|EGJ21345.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides WS8N]
          Length = 226

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++ + L  I EG+ + +IA  L I+  TV  ++ +IMRK   ++R+ A+
Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210


>gi|330826961|ref|YP_004390264.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|329312333|gb|AEB86748.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 212

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 37/70 (52%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A   ++      +  +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K 
Sbjct: 132 AAERSEADAELASRLAQLTPQQFRVLLCLADGLLNKQIAAQLGLAENTVKVHVTAILKKL 191

Query: 229 ATKTRSGAIA 238
           A  +R+ A  
Sbjct: 192 ACYSRTQAAV 201


>gi|327404698|ref|YP_004345536.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327320206|gb|AEA44698.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 217

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 13/189 (6%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK-----YYNVLQRPTELFCPVFHTLP 117
           +   +  +E     ++ +  P  L+  +++                   ++     H  P
Sbjct: 35  IAEANSGEEAL--ELLQNHRPDILITDISMPGMSGNELIKALKSADPEMKILVVSMHNDP 92

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           E I     ++     L     +     +     G     +    + L+   +    K  +
Sbjct: 93  EIIADIVMLEAEGYILKNTGRKELTAALEKIADGSTFYSEE-VLLSLMKRQKKEFRKDLE 151

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V      +L+ RE+E +  I+   ++++IA  L IS+ TV  +  +I +KT  KT  G I
Sbjct: 152 VA-----QLSNREIEIIRLIALEYSNEKIAEELFISKRTVETHRKNINQKTNIKTVVGLI 206

Query: 238 AYAVRNNIV 246
            +A+RN +V
Sbjct: 207 KFAIRNELV 215


>gi|319941037|ref|ZP_08015373.1| hypothetical protein HMPREF9464_00592 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805394|gb|EFW02196.1| hypothetical protein HMPREF9464_00592 [Sutterella wadsworthensis
           3_1_45B]
          Length = 219

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 9/184 (4%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---I 120
              +L   +    ++  D     V    L E      +++R   L   V   L +    +
Sbjct: 37  AALELVDREGDADLLILDLSLPGVTGTELME-----EIVRRQPMLKILVVSGLADQESIM 91

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +   + D   +   +  +   G  I    L E      +            
Sbjct: 92  RVLQLGAAGFVPKSLDTELLSSAIDFVLKGGVYIPSKLLTE-SQKDGFFTRTAARLKAPE 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT R+++ L  +++G     I   L +S  TV  ++A+I R      R+ A+  A
Sbjct: 151 SAPPHLTDRQLDVLAQLAKGAPIKRICRELDLSEGTVKTHVAAIYRSFGASNRTEALIAA 210

Query: 241 VRNN 244
            R  
Sbjct: 211 RRAG 214


>gi|320333589|ref|YP_004170300.1| LuxR family transcriptional regulator [Deinococcus maricopensis DSM
           21211]
 gi|319754878|gb|ADV66635.1| transcriptional regulator, LuxR family [Deinococcus maricopensis
           DSM 21211]
          Length = 186

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +++  P     L D L    +      + ++  D   G+   LT  E   L +++ G +
Sbjct: 90  AVLIAHPDSDPDLIDVLRRASV-----GDRWR--DTPPGRPV-LTPAERAVLRYVARGLS 141

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +IA  L +   TV N ++ I +K     R+ A  Y
Sbjct: 142 NKQIARRLDVIEGTVQNALSKIFQKLRVANRTQAALY 178


>gi|298290106|ref|YP_003692045.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926617|gb|ADH87426.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 205

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H+     LT RE E L  I+ G ++ E    LGIS  T+  + A IM K   K  +  +
Sbjct: 137 AHFPGHEMLTPREREVLVQIASGASNKEAGRKLGISPRTIEVHRARIMEKLGAKNAADLV 196

Query: 238 AYAVR 242
              ++
Sbjct: 197 RIVLK 201


>gi|288961498|ref|YP_003451837.1| transcriptional regulatory protein [Azospirillum sp. B510]
 gi|288913806|dbj|BAI75293.1| transcriptional regulatory protein [Azospirillum sp. B510]
          Length = 222

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L W+  G+++  IA  L IS  TV  + A +M K    +    +  A+   +
Sbjct: 158 LTPRELDVLRWLVAGRSNKVIAFELSISPRTVEIHRARVMEKMRADSLPTLVRMAIAAGV 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|168069377|ref|XP_001786429.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162661379|gb|EDQ48759.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 563

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDL---LARMIPLDCTVSWTMRMYALTEYVGASHF 61
           I Q ++ +  E  + T     LP +++L   + R++ +D        +  L E      F
Sbjct: 326 ILQGHVAVYTEQGKGTLVTCTLPRQTELKDEVIRLLVVDDHPVIRESLRTLLE--EQQDF 383

Query: 62  LLVRWDLFQEQKLD-------SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
            +V      EQ ++        +V  D    +V  ++ S   K      R   L    F 
Sbjct: 384 QVVGTAEDGEQAIELCRQLRPQLVLMDVDMPIVDGISASRTIKESWPHIRI--LILTTFE 441

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF- 173
              + +       + Y   +     +   +  +   G +I +       L A  +A+   
Sbjct: 442 DTKQALEALRSGVDGYLLKSMQPLELAETIRTVHRGGTLIEQG--MSHKLFAQLEADNSG 499

Query: 174 -KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                +     ++LT RE+E L ++S+G     IA    +S  TV NY +S   K   + 
Sbjct: 500 DDPSSIKASSAYDLTPRELEILQFVSKGLRYKSIASNFYLSDGTVRNYASSAYLKLGVRN 559

Query: 233 RSGA 236
           R  A
Sbjct: 560 REEA 563


>gi|28871293|ref|NP_793912.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|66047117|ref|YP_236958.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|213970871|ref|ZP_03398994.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
 gi|257486630|ref|ZP_05640671.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289650462|ref|ZP_06481805.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|289676759|ref|ZP_06497649.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
 gi|298488740|ref|ZP_07006769.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|302059914|ref|ZP_07251455.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           K40]
 gi|302130513|ref|ZP_07256503.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|302184715|ref|ZP_07261388.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|28854543|gb|AAO57607.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|63257824|gb|AAY38920.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
 gi|213924394|gb|EEB57966.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
 gi|298156813|gb|EFH97904.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330877330|gb|EGH11479.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330889570|gb|EGH22231.1| LuxR response regulator receiver [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330898580|gb|EGH29999.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330937554|gb|EGH41495.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330949995|gb|EGH50255.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
 gi|330966557|gb|EGH66817.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|330973098|gb|EGH73164.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330981561|gb|EGH79664.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
 gi|331015675|gb|EGH95731.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 208

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 10/204 (4%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
             + +  L E  G    ++   D   +     +     P  ++  + + + D    V+ R
Sbjct: 13  IRLAVRMLMERHGYE--VIAETDNGVDAL--QLAREHLPDIVILDIGIPKLDG-LEVIAR 67

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFD--VARIRIGLMLLFPKGRIILRDRLWEI 162
            + +  P F  L      P     R         V + +    LL     ++     +  
Sbjct: 68  LSAMTLP-FKVLILTSQAPGHFSMRCMQAGAAGYVCKQQDLTELLSAIKAVLSGYSYFPN 126

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L   +++M  + +        L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y  
Sbjct: 127 QALHTVRSSMGNASESDMVDR--LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKT 184

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ K    +    I  A RN +V
Sbjct: 185 RLLLKLNAHSLVDLIELAQRNGLV 208


>gi|332672210|ref|YP_004455218.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332341248|gb|AEE47831.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484]
          Length = 77

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +M ++ +        LT RE   L  ++E  T +EIA  L ++RNTV + + S+ RK   
Sbjct: 2   SMLETRETAGTVTEALTRRERVVLGELAEDVTLEEIATRLFVTRNTVKSQVRSVYRKIGV 61

Query: 231 KTRSGAIAYAVRNNI 245
            TR+ A+A+AV + I
Sbjct: 62  STRAEAVAWAVAHGI 76


>gi|318605170|emb|CBY26668.1| putative two-component response regulator precursor [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 198

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D++ I      +         + L ++            S      +  
Sbjct: 85  AGANGFISKNKDISEILFAAQNVLRGYSFFPSETLIQLA--------GQPSSHDPVNRAR 136

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N
Sbjct: 137 LLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHN 196

Query: 245 IV 246
           +V
Sbjct: 197 LV 198


>gi|257067453|ref|YP_003153708.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256558271|gb|ACU84118.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 255

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 64/259 (24%), Gaps = 38/259 (14%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
             + V+      D   R++ +D        +  + +  GA    +V      +  LD I 
Sbjct: 1   MDAMVNDAT--GDQRVRVLLVDDEALMRSGLRLMID--GAHGIEVVGEAADGQTALDQIA 56

Query: 79  SSDWPFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +  P  ++  + +        +            +    F T    +         +  
Sbjct: 57  -ALCPDVVLMDIRMPRMTGLEALRALTARGDAVRVVMLTAFDTDEFLLQALRAGAVGFLL 115

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY------------------------ 168
                  +   ++           D L  +  LAA                         
Sbjct: 116 KDSPPEEVVRAVLDAAADRSRFSPDVLARLVRLAAAGGGTDGEADASGPGESGHHGEAAE 175

Query: 169 ---QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                      D        +T RE +    ++ G  + +I   L +S  TV  ++  + 
Sbjct: 176 GGTAGVSRGGADEPPSAPEGITEREWDVARLVARGLANQQIGEQLFMSVATVKTHLGRLY 235

Query: 226 RKTATKTRSGAIAYAVRNN 244
            K     R       +   
Sbjct: 236 HKLQVTNRVQLAIRVLELG 254


>gi|229488432|ref|ZP_04382298.1| transcriptional regulator, LuxR family protein [Rhodococcus
           erythropolis SK121]
 gi|229323936|gb|EEN89691.1| transcriptional regulator, LuxR family protein [Rhodococcus
           erythropolis SK121]
          Length = 921

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            L +  A M+ +  V      +LT RE++ L  +  G    EIA  L +S NT+ +++ +
Sbjct: 838 FLESEAAQMYPAAIVR----VQLTKREMDVLVELGLGIPIGEIARRLFVSNNTLKSHLRA 893

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           + RK    +R  A+A A R+N++
Sbjct: 894 LYRKLGAHSREEAVAAAHRHNLL 916


>gi|161616094|ref|YP_001590059.1| hypothetical protein SPAB_03896 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161365458|gb|ABX69226.1| hypothetical protein SPAB_03896 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 227

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
               I  + L         +RL    +       +  S       +  LT +E E +  +
Sbjct: 114 GHRIIAGISLMRDIPFSSEERLRAQAVQPLLGLAIHDSLQEDNDLESILTAKEREIVGMV 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 174 CEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|189352210|ref|YP_001947837.1| LuxR family two component transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189336232|dbj|BAG45301.1| LuxR family two component transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 210

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 15/161 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           + P  LV  + + EK  +    +        PV         P              V  
Sbjct: 48  NLPACLVLDVRMPEKSGFDVQAELNARGATLPVIFVSGHGDIP------------MSVRA 95

Query: 140 IRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           ++ G +    K     +  +R+     LA  +    + +     +   LT RE E L  +
Sbjct: 96  LQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHVADQRHRELRERLAALTAREKEVLQGV 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK S +IA  L IS  TV+ + ASI  K    + +  + 
Sbjct: 156 VDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAALVR 196


>gi|159901160|ref|YP_001547407.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894199|gb|ABX07279.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 219

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE +     +EG+ + +IA  L +S  T+  ++ +I  K     ++    +AV+  +
Sbjct: 155 LTERERQVFFLAAEGRRNSDIAQQLILSEETIKTHLRNIYSKLGLGNKAELRLFAVQARL 214


>gi|145225441|ref|YP_001136119.1| response regulator receiver protein [Mycobacterium gilvum PYR-GCK]
 gi|145217927|gb|ABP47331.1| response regulator receiver protein [Mycobacterium gilvum PYR-GCK]
          Length = 281

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +  +   L LL       L++RL  +   L+          D        L  RE++ L 
Sbjct: 175 IREVHAELRLLAVTAPPPLQNRLRALADTLSGTGTEPGAGPDAAT-----LAPRELDVLA 229

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G T+ E A  L +   TV +Y+ S   K  T+TR  +++ A R +++
Sbjct: 230 QVALGCTNAEAAQRLSLKPETVKSYLRSAATKLGTRTRYESVSKARRLHLI 280


>gi|89092784|ref|ZP_01165736.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
 gi|89082809|gb|EAR62029.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
          Length = 223

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++  + ++EG+T   +A  + +S  TV+ +  +I RK      S  +  A+R+NI
Sbjct: 161 LTKRELQIFSLLAEGRTVSIVAEEMFLSPKTVHAHRTNIFRKLKISNNSELVHLAIRHNI 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|332140807|ref|YP_004426545.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550829|gb|AEA97547.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 222

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT  +++ L  +S+G  + +IA  L IS +TV  ++++++RK     R+ A   A +N
Sbjct: 160 QLTPHQLKVLRMVSDGLLNKQIAYELAISESTVKQHVSAVLRKLGVINRTKA-GIAFKN 217


>gi|86131430|ref|ZP_01050028.1| two-component system response regulator, LuxR family [Dokdonia
           donghaensis MED134]
 gi|85817875|gb|EAQ39043.1| two-component system response regulator, LuxR family [Dokdonia
           donghaensis MED134]
          Length = 209

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P+ +     ++    ++   +     G +L   + +++    L E+ +   Y  N     
Sbjct: 76  PDILVLALSVEEDDHTILKMIRAGAKGYLLKDTEKKVLEN-ALNELIINGYYHTNTVSQL 134

Query: 177 ---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
               +      EL  RE+E +       T +EIA ++ +S  TV  Y  S+  K   K R
Sbjct: 135 LVKSLDGDNRDELRDREIEFIKHACTEMTYNEIASVMFLSPKTVQGYRDSVFSKLNLKNR 194

Query: 234 SGAIAYAVRNNI 245
           +G + YA++N +
Sbjct: 195 TGLVIYALKNGL 206


>gi|126462296|ref|YP_001043410.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103960|gb|ABN76638.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 226

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++ + L  I EG+ + +IA  L I+  TV  ++ +IMRK   ++R+ A+
Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210


>gi|328886152|emb|CCA59391.1| Hemoglobin-dependent two component system response regulator HrrA
           [Streptomyces venezuelae ATCC 10712]
          Length = 208

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 10/149 (6%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +   +    +   P      V  T   +    A ++                
Sbjct: 54  MDLQFGSGMHGSEATAAITAAPGGPKVLVLTTYDTDADILAAVEAGASG----------Y 103

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+   P   +    R    G  A   A   +  D        LT RE+E L  + EG ++
Sbjct: 104 LLKDAPPEELAAAVRTAAAGQSALAPAVAHRLMDRMRTPAEALTRRELEVLQLVGEGLSN 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKT 232
            +I+ +L +S+ TV +++  +  K    +
Sbjct: 164 QQISKVLFLSQATVKSHLVHVFAKLGVDS 192


>gi|239945022|ref|ZP_04696959.1| two-component system regulatory protein [Streptomyces roseosporus
           NRRL 15998]
 gi|239991484|ref|ZP_04712148.1| two-component system regulatory protein [Streptomyces roseosporus
           NRRL 11379]
          Length = 64

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++G ++  I   L I+  TV  ++  +  K     R+ A+  A+R  +V
Sbjct: 2   LNLLAQGLSNRRIGRALHITEQTVKAHLHMVYHKLGVADRTEAVVIALRQGLV 54


>gi|291286657|ref|YP_003503473.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883817|gb|ADD67517.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 212

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  L    +           +T  V  +  G   + P              +++ +Q   
Sbjct: 94  FKALKAGASGYILKGTPAIQITNSVRLLHDGGSPMTPSIAR---------KVISFFQDKP 144

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F + +        LT REVE L  + +G T +E++  L ISRNTV+ +I  I  K     
Sbjct: 145 FNNDENR------LTKREVEVLKLLDQGFTYNEVSAELDISRNTVHTHIKKIYEKLQASG 198

Query: 233 RSGAIAYA 240
           +  A+  A
Sbjct: 199 KEDALRKA 206


>gi|330503870|ref|YP_004380739.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328918156|gb|AEB58987.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
          Length = 221

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  + + +   A++   +  +      +  D +      ++ Q +   S      +
Sbjct: 95  ITYGAVGFITKSSPRAQMTEAIAQILDGNVYLPPDIIRSQKSGSSRQHHDNHSIAPELLQ 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 155 --ALTRKQLLVLERMTKGESNKQIAYSLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|182437656|ref|YP_001825375.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778292|ref|ZP_08237557.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466172|dbj|BAG20692.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658625|gb|EGE43471.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 206

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 61/189 (32%), Gaps = 22/189 (11%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTL 116
           L+V  +     +  ++  +  P   V  + +   D         TE           H  
Sbjct: 32  LVVVAEAASGPEALAMALAHRPDVAVLDLQMPGADGVKVATSLRTELPHCRTMIVTSHGR 91

Query: 117 PENITPPAGMD-NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           P ++          +   T    R+   +  +    R +  +       LAA        
Sbjct: 92  PGHLKRALAAGVRGFVPKTVSARRLAEIIRTVHAGNRYVDPE-------LAA-------- 136

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D     D  LT RE E L   ++G    EIA    +S+ TV NY++S   K   + R  
Sbjct: 137 -DAISAGDSPLTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAATKIGAENRHT 195

Query: 236 AIAYAVRNN 244
           A+  A    
Sbjct: 196 AVRLARERG 204


>gi|307941454|ref|ZP_07656809.1| transcriptional regulatory protein FixJ [Roseibium sp. TrichSKD4]
 gi|307775062|gb|EFO34268.1| transcriptional regulatory protein FixJ [Roseibium sp. TrichSKD4]
          Length = 198

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 31/74 (41%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +AA            +     LT RE E L  I+EG ++ E    LGIS  TV  + A I
Sbjct: 120 IAARAGRADAQAKQGFQGADLLTRRETEVLQEITEGASNKEAGRKLGISPRTVEVHRARI 179

Query: 225 MRKTATKTRSGAIA 238
           M K   +  +  + 
Sbjct: 180 MEKLGARNAADLVR 193


>gi|301057051|gb|ADK54873.1| LuxR transcriptional regulator [uncultured soil bacterium]
          Length = 157

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 155 LRDRLWEIGLLAAYQAN-----MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           LR+R  E+ ++   Q       +    D        LT RE + L  +++   +DEIA  
Sbjct: 61  LRERHPEVRVMVLSQTPPAEVLLTFRDDRTDEGLGRLTAREQDVLRCLAKAYDNDEIADE 120

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LGI+  TVN ++ +I  K  T+ RS  +  A
Sbjct: 121 LGIAVRTVNRHLEAIRGKLGTRRRSHLVRLA 151


>gi|300788090|ref|YP_003768381.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
 gi|299797604|gb|ADJ47979.1| LuxR family transcriptional regulator fused with ATPase domain
           [Amycolatopsis mediterranei U32]
          Length = 771

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +L+GRE E    +S+G+T+ +IA  LG+S  TV  Y+A I +K A  +R+   
Sbjct: 692 QLSGREREISRLVSDGRTNQQIARTLGLSHKTVETYLARIFKKLALCSRAQLA 744


>gi|225352424|ref|ZP_03743447.1| hypothetical protein BIFPSEUDO_04044 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156931|gb|EEG70300.1| hypothetical protein BIFPSEUDO_04044 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 218

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + ++  +EG    +IA  LGIS  T+  ++ SI+RK   KT   A+A  VR+N
Sbjct: 158 LTVREEQIISLCAEGMLDRDIAEHLGISEATIRKHMQSILRKLNCKTSRQAVALWVRSN 216


>gi|238059473|ref|ZP_04604182.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881284|gb|EEP70112.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 198

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                D  LT RE E L   + G    E+A  L +S  TV N++  I RKT  +TR  A+
Sbjct: 130 AALAADCPLTARETEVLRLTAAGAPVAEVAGSLRLSCGTVRNHLGRIARKTGARTRIEAV 189

Query: 238 AYAVRNNIV 246
             A  +  +
Sbjct: 190 RLARESGWI 198


>gi|16766424|ref|NP_462039.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|168242933|ref|ZP_02667865.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447341|ref|YP_002047114.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|16421677|gb|AAL21998.1| putative response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194405645|gb|ACF65864.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205337769|gb|EDZ24533.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|261248254|emb|CBG26091.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995294|gb|ACY90179.1| putative response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159678|emb|CBW19197.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914146|dbj|BAJ38120.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225798|gb|EFX50852.1| Putative response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323131480|gb|ADX18910.1| putative response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332989989|gb|AEF08972.1| putative response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 227

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
               I  + L         +RL    +       +  S       +  LT +E E +  +
Sbjct: 114 GHRIIAGISLMRDIPFSSEERLRAQAVQPLLGLAIHDSLQEDNDLESILTAKEREIVGMV 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 174 CEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|300786704|ref|YP_003766995.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299796218|gb|ADJ46593.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 208

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ RE   L  +++G  + EIA  L  S  TV + +  I  +   + R+ A+A+A+R  +
Sbjct: 148 MSQRETRVLRLVADGFETKEIADQLSYSERTVKSILHDITNRFQLRNRAHAVAFAMREGL 207

Query: 246 V 246
           +
Sbjct: 208 I 208


>gi|325673029|ref|ZP_08152723.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325556282|gb|EGD25950.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 253

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195
            R R  + L       +    L  + LLA + + + ++ +    +D    LT R+ +   
Sbjct: 141 GRARALVGLFDGDDSALGTRDLATLRLLARHLSALTRNLETAPRRDPYAALTERQRDVAR 200

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +++G ++  IA  L ++ +TV  Y++ I+  T   +R+   
Sbjct: 201 LVADGMSNAAIARRLMLAEDTVKKYVSRILAATGCASRTQLA 242


>gi|291452585|ref|ZP_06591975.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355534|gb|EFE82436.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 220

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +    +       R   L   V ++  G  LL P     + +RL           + 
Sbjct: 96  FDAIMAGASGYVLKAIRGADLLDAVRQVAAGHSLLDPAATARVLERLR---------GHG 146

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D        LT +E   L  I EG T+  I   L ++  T+ NY+++++ K   + 
Sbjct: 147 TPGDDDRLS---GLTEQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSALLAKLGMER 203

Query: 233 RSGAIAYAVRNN 244
           RS A AY  R +
Sbjct: 204 RSQAAAYVARMH 215


>gi|220924070|ref|YP_002499372.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948677|gb|ACL59069.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 251

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 70/208 (33%), Gaps = 16/208 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L    +     +++        + + A+   L R        LD           +    
Sbjct: 42  LFREALASAVRLAFPAAAVEEADGIEAACATLSRLRSVDLTLLD-----------LTMRG 90

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           ++  D    +  R   +   V   L +       + +         A    G  +L    
Sbjct: 91  VNGFDGLIAIRTRFPRIPILVVSGLDDPRIVREALSHGASGFVPKAA----GKAVLTRAI 146

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVIL 210
             +L   ++    + A +    +       +   ELT ++V  L  I +GK + +IA  L
Sbjct: 147 TDVLNGSIFVPEGVGAQEGEAPRGGKPPIAQRIAELTPQQVRVLLMIRQGKLNKQIAHEL 206

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIA 238
           G+  +TV  +++ I+RK    +R+  + 
Sbjct: 207 GVGDSTVKAHVSEILRKLGVISRTQIVI 234


>gi|254236520|ref|ZP_04929843.1| hypothetical protein PACG_02517 [Pseudomonas aeruginosa C3719]
 gi|126168451|gb|EAZ53962.1| hypothetical protein PACG_02517 [Pseudomonas aeruginosa C3719]
          Length = 217

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  TV  ++ +I RK   +TR+ A 
Sbjct: 153 LTPQQFRVLTMVCEGVLNKQIAYDLNVSEATVKAHVTAIFRKLNVRTRTQAA 204


>gi|313158585|gb|EFR57979.1| transcriptional regulator, LuxR family [Alistipes sp. HGB5]
          Length = 195

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              I+RD L    +      +          +   L+GRE E L  I+ G  + +IA  L
Sbjct: 98  EEAIVRDILR---MHHGAHRSEHIVPGAVRPEAAPLSGREAEVLALIARGYMNKQIADSL 154

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I   TV ++  +IM K   ++ +G   YA+    V
Sbjct: 155 QIGLTTVISHRRNIMEKLGIRSVAGLAIYALTAGYV 190


>gi|311697246|gb|ADQ00118.1| protein containing signal transduction response regulator, receiver
           region domains [marine bacterium HP15]
          Length = 222

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 39/80 (48%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A Q +  +   +     ++ + R VE L  +SEG+T+ EI+  L I+ NT+ +Y+  I  
Sbjct: 140 ARQVSKLERSLLMPETKYQFSPRYVEILVLLSEGRTNHEISDELSINLNTLKSYLKDIYS 199

Query: 227 KTATKTRSGAIAYAVRNNIV 246
                +R   +  AV   I+
Sbjct: 200 ILGVGSRMACVRKAVSEGII 219


>gi|282878907|ref|ZP_06287671.1| hemerythrin HHE cation binding domain protein [Prevotella buccalis
           ATCC 35310]
 gi|281298906|gb|EFA91311.1| hemerythrin HHE cation binding domain protein [Prevotella buccalis
           ATCC 35310]
          Length = 313

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        L+ RE E +  + +G T+ EIA  L IS NTV  +  +I RK    + +G 
Sbjct: 237 NQTPQNQEALSDREKEVVISLVQGMTNKEIAEHLCISINTVITHRRNIARKLQIHSPAGL 296

Query: 237 IAYAVRNNIV 246
             YA+  N+V
Sbjct: 297 TIYAIVTNLV 306


>gi|108798341|ref|YP_638538.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119867438|ref|YP_937390.1| LuxR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108768760|gb|ABG07482.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS]
 gi|119693527|gb|ABL90600.1| transcriptional regulator, LuxR family [Mycobacterium sp. KMS]
          Length = 881

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             ELT +E    T +++G ++ E+A  L +S  TV  ++  I  K   ++R+   A
Sbjct: 823 HAELTPQEDAVTTLVAQGLSNREVAAELYVSPKTVQYHLTRIYAKLGVRSRTELAA 878


>gi|92112994|ref|YP_572922.1| two component LuxR family transcriptional regulator
           [Chromohalobacter salexigens DSM 3043]
 gi|91796084|gb|ABE58223.1| two component transcriptional regulator, LuxR family
           [Chromohalobacter salexigens DSM 3043]
          Length = 220

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 4/172 (2%)

Query: 71  EQKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDN 128
            +    +V      DL+   + +     +  ++Q R      PV         P      
Sbjct: 39  MEATTDMVLRHPDADLILLDLHMPGAHGFSGLIQLRGQSPEVPVVVISGSEEPPVVRRAI 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +  F        L ++    R +L   +W    +        +           LT 
Sbjct: 99  DYGASGFIPKSS--SLDVIAEAIRQVLEGEVWLPEEMVDILGESNEEEARFAEAIASLTP 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++   L  ++EG  + +IA  L +S  T+  ++ +I+RK    +R+ A+  A
Sbjct: 157 QQFRVLNMLNEGLLNKQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAA 208


>gi|302339532|ref|YP_003804738.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301636717|gb|ADK82144.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM
           11293]
          Length = 521

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            ++  L+GRE E    + +GKT+ EI+  L IS +T   +I+ I +K    TRS  
Sbjct: 452 SRELGLSGREQEIALLMLQGKTNKEISDTLFISMSTTKTHISRIFKKATVSTRSEL 507


>gi|302036419|ref|YP_003796741.1| hypothetical protein NIDE1055 [Candidatus Nitrospira defluvii]
 gi|300604483|emb|CBK40815.1| protein of unknown function, putative Response regulator
           [Candidatus Nitrospira defluvii]
          Length = 118

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +LT RE+E L  I +G T+  IA  L IS  T + + +++M+K      +  +  A+
Sbjct: 39  RPEDLTPRELEILRLIWDGHTNRSIAEQLNISMKTADTHRSNMMKKLRACNTAQLLKAAL 98

Query: 242 RNNIV 246
             N++
Sbjct: 99  EGNLL 103


>gi|298250549|ref|ZP_06974353.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297548553|gb|EFH82420.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1080

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 14/108 (12%)

Query: 153  IILRDRLWEIGL--LAAYQANMFKSYDVHWGKD------------FELTGREVECLTWIS 198
             +LRD L  + +  L  Y   + +++  H                  LT +E   L  ++
Sbjct: 973  PLLRDILPHLHIQPLRNYARQLIQAFSQHDASQSIVVTPVFEPLYEPLTSQEQRVLRLLA 1032

Query: 199  EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G+++ EIA  L +S NT+ + + SI RK     R  A   A + +++
Sbjct: 1033 TGRSNPEIARELIVSVNTIRSQVQSIYRKLQVNNRHAASELARKLHLL 1080


>gi|323528532|ref|YP_004230684.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323385534|gb|ADX57624.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 210

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 40/79 (50%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +  +F++Y         L+ RE + L  ++ GK+ +EIA    +S  T++ +   +M+K
Sbjct: 130 VEGIVFETYSGDAPPHEILSDREFQVLQMLALGKSLNEIADAFALSAKTISTHKMRLMQK 189

Query: 228 TATKTRSGAIAYAVRNNIV 246
                 +  I YA+R+ +V
Sbjct: 190 LGLANNADLIRYAIRHGLV 208


>gi|149912597|ref|ZP_01901131.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
 gi|149813003|gb|EDM72829.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
          Length = 206

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPV-FHTLPENITPPAGMDNRYCSLTFDVAR 139
           D P  ++R  A+ +      +L   +E    +    L    +     ++    L     R
Sbjct: 55  DQPMKVLR--AVRKSCDMVRILAFCSEKGIDMAVDALDAGASGILTYNSEMSDLRVAARR 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +  G   + P   + +  +L         QA   +       +   LT RE + +  + +
Sbjct: 113 VMNGDNYVQPDMAMDIFAKLR--------QAEAKR----KEAERLRLTARESQVVRHLMQ 160

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G T+ +I+V L IS  TV +Y+ S+  K     R   +  A R  +
Sbjct: 161 GMTNGQISVELNISEKTVKHYVGSLKDKFGAANRLEVVLEAQRLGV 206


>gi|307726626|ref|YP_003909839.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587151|gb|ADN60548.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 202

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  ++ G ++ +IA  L +S  TV+ Y + I  K    + +  I +A  + +
Sbjct: 141 LSAREVEVLQHLARGASNRDIASRLFLSDKTVSTYKSRIQEKLGLSSLAALIEFASLHKL 200

Query: 246 V 246
           +
Sbjct: 201 I 201


>gi|229820080|ref|YP_002881606.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229565993|gb|ACQ79844.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 201

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     +  LT RE + L   +EG   +EIA    ++  TV NY++S + K     R 
Sbjct: 130 AADAIAAGESPLTPREADVLELAAEGAPVEEIARRAALAPGTVRNYLSSAVAKLGASNRH 189

Query: 235 GAIAYAVRNN 244
            A   A    
Sbjct: 190 EAARLARARG 199


>gi|182680497|ref|YP_001834643.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636380|gb|ACB97154.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 235

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 8/134 (5%)

Query: 112 VFHTLPENITPPAGMDNR-YCSLTFDVARIRIGLMLLFPKGRIILRDR-----LWEIGLL 165
           V     ++   P   +     ++     +    L+       +I  D      +   G L
Sbjct: 85  VLEKEADSAHQPHLHNRGIAVAIVASPDQTGTRLLETRGVSGVIHPDAEPQAFIDMAGDL 144

Query: 166 AAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            A + ++ KS +   H      L+ R+ E L  ++ G  + +IA  LG++  TV +++++
Sbjct: 145 LAGRRSISKSLNAAPHAAGLGRLSNRQFEILELMTRGLLNKQIAWELGLTEGTVKSHVSA 204

Query: 224 IMRKTATKTRSGAI 237
           I+ K     R+ AI
Sbjct: 205 ILEKLGCDRRTQAI 218


>gi|167621653|ref|YP_001672161.1| ATP-dependent transcription regulator LuxR [Caulobacter sp. K31]
 gi|167351776|gb|ABZ74502.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Caulobacter sp. K31]
          Length = 182

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E+  +  I EG ++ +IA    IS +TV  +I +I  K   K R  A+  A +  I
Sbjct: 121 LTRKELAMIQRIKEGFSNRDIAEKHRISEDTVKWHIRNIFSKLQVKNRVQALLKAEQIGI 180

Query: 246 V 246
           +
Sbjct: 181 L 181


>gi|115360089|ref|YP_777227.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria AMMD]
 gi|115285377|gb|ABI90893.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria AMMD]
          Length = 210

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 15/161 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           + P  LV  + + EK  +    +        PV         P              V  
Sbjct: 48  NLPACLVLDVRMPEKSGFDVQAELNARGATLPVIFVSGHGDIP------------MSVRA 95

Query: 140 IRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           ++ G +    K     +  +R+     LA  +  + + +     +   LT RE E L  +
Sbjct: 96  LQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHAVDRHHRELRQRLDALTAREKEVLRGV 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK S +IA  L IS  TV+ + ASI  K    + +  + 
Sbjct: 156 VDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAALVR 196


>gi|94310638|ref|YP_583848.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93354490|gb|ABF08579.1| two component response regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 191

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 67/196 (34%), Gaps = 12/196 (6%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           M      V  +H          ++ LD++   + P   V  + + + D     LQ+    
Sbjct: 1   MRRALARVLGAHRYHTSCFDSAKRFLDNVELENSPICAVVDLQMPDMDGIA--LQQTLSQ 58

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
             PV           A    +  ++ F    ++ GL+L   + R   R R          
Sbjct: 59  RVPVVILTGHADVSKAVQAMQAGAIDFLEKPVQDGLLLAAVE-RACERAR---------E 108

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q        V   K   LT RE E L WI  G  + ++A  LG    T+  + A +M+K 
Sbjct: 109 QFARKAELRVLRQKIERLTPREREVLGWIVSGLRNKQVASELGTVEKTIKVHRAHVMQKL 168

Query: 229 ATKTRSGAIAYAVRNN 244
              +    +  A +  
Sbjct: 169 EVDSLPALVRIADKMG 184


>gi|116620528|ref|YP_822684.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223690|gb|ABJ82399.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 251

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 16/182 (8%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           Q +  D + + +    L+  +     D     L          F  L E       M+N 
Sbjct: 23  QVEGFDLLPTCNTLAALMEQITQGTPDLVLMDL-----TPEVTFAVLSE---MKHAMNNS 74

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMF-----KSYDVHWG 181
              L  +     +    +    R ILR  L    ++  L   QA         +      
Sbjct: 75  RIVLWVNSISTELAFQAMGLGVRGILRKTLPTELQVKCLQKVQAGELWFEKALTDSFLCA 134

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE + ++ +S+G  + EIA  L IS  TV  Y++ + +K   K R     + +
Sbjct: 135 RRVALTQREGQLVSLLSQGLKNKEIATTLMISEGTVKVYLSRLFQKVGVKDRFELALFGL 194

Query: 242 RN 243
           +N
Sbjct: 195 KN 196


>gi|226309128|ref|YP_002769088.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226188245|dbj|BAH36349.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 857

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 55/165 (33%), Gaps = 11/165 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP- 149
           AL E  +     + P         TL   I    G + +         R      LL P 
Sbjct: 695 ALVEVSEALGSTEEPVLAHTVYAWTLEAGIHAATGHERKSFRSLHKALRAAETGGLLRPF 754

Query: 150 -----KGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                  R I  +     G     A    N  +  ++       LT  E   L  ++ G 
Sbjct: 755 LDYGASLRPIFDEFSGHFGDQEAFAEQVRNRIRPQELVSAP--ILTPGEYTVLRELASGD 812

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T++ IA  L +S NT+  ++  I RK     R  A+  A R  ++
Sbjct: 813 TTESIADTLFLSVNTIKTHLRGIYRKLEVSNRRDALKAARRGGLI 857


>gi|167034135|ref|YP_001669366.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|150014692|gb|ABR57213.1| PedR1 [Pseudomonas putida]
 gi|166860623|gb|ABY99030.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 221

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  + + +   +++   +  +      +  D +       + + N   S+     +
Sbjct: 95  ITYGAVGFITKSSPRSQMIEAIEQILNGNVYLPPDIIRAQKSSTSRRHNDAPSFPPEMLQ 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 155 --ALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|26989384|ref|NP_744809.1| LuxR family two component transcriptional regulator [Pseudomonas
           putida KT2440]
 gi|24984245|gb|AAN68273.1|AE016461_9 DNA-binding response regulator AgmR [Pseudomonas putida KT2440]
          Length = 221

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  + + +   +++   +  +      +  D +       + + N   S+     +
Sbjct: 95  ITYGAVGFITKSSPRSQMIEAIEQILNGNVYLPPDIIRAQKSSTSRRHNDAPSFPPEMLQ 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 155 --ALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|330946720|gb|EGH47657.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 88

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 25  LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAA 76


>gi|117617775|ref|YP_855754.1| positive regulator AgmR [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559182|gb|ABK36130.1| positive regulator AgmR [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 214

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   LT ++ + L  + +G  + +IA  L +S  T+  +I +I RK   K R+ A+  
Sbjct: 146 ASKLASLTPQQYKVLVMLRDGSLNKQIAWELNVSEATIKAHITAIFRKLGVKNRTQAVI- 204

Query: 240 AVRN 243
           A++ 
Sbjct: 205 ALQQ 208


>gi|238796161|ref|ZP_04639672.1| hypothetical protein ymoll0001_5030 [Yersinia mollaretii ATCC
           43969]
 gi|238720106|gb|EEQ11911.1| hypothetical protein ymoll0001_5030 [Yersinia mollaretii ATCC
           43969]
          Length = 211

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S   +      LT RE + L  I+EG  +  IA  L IS+ TV  +  ++M+K      
Sbjct: 138 MSSHGNKSNQPILTPRERQILKLITEGACNRIIADRLSISQKTVETHRLNMMKKLDVHKV 197

Query: 234 SGAIAYAVRNNI 245
           +  I ++ R  +
Sbjct: 198 AELIHWSYRLGL 209


>gi|325676385|ref|ZP_08156064.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325552946|gb|EGD22629.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 236

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 5/154 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR    +  +   ++     +L C +  +  ++      +          V +  +G  L
Sbjct: 81  VRLPDGNGVELCRDLRTVLPDLRCLMLTSFADDEALFDAVMAGASGF---VLKQILGTDL 137

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     +     L +    AA    M    +       EL+ +E      I +G T+ EI
Sbjct: 138 ISAVRTVGAGGSLLDSRATAALMQRM--RSERTADPLAELSDQERAVFDLIGQGLTNREI 195

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           A  L ++  T+ NY++ ++ K   + R+ A   A
Sbjct: 196 AERLFLAEKTIKNYVSRLLAKLGMQRRTQAAVLA 229


>gi|295680795|ref|YP_003609369.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440690|gb|ADG19858.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 210

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 39/77 (50%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A +F+ +         LT RE + L  I+ G++ ++IA    +S  T++ +   +M+K  
Sbjct: 132 AMVFEKHAGDVPPHEVLTDREFQVLQLIASGQSINDIAEACSLSAKTISTHKMRLMQKLG 191

Query: 230 TKTRSGAIAYAVRNNIV 246
               +  I YA+R+ ++
Sbjct: 192 LSNNAEVIRYAIRHGLI 208


>gi|226326344|ref|ZP_03801862.1| hypothetical protein PROPEN_00192 [Proteus penneri ATCC 35198]
 gi|225205295|gb|EEG87649.1| hypothetical protein PROPEN_00192 [Proteus penneri ATCC 35198]
          Length = 60

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +T RE++ L  +S G  + +IA  L IS  TV  +I +I++K    +R  A    +++
Sbjct: 1   MTKRELDVLHEVSAGMKNKQIAENLFISEETVKVHIRNILKKLQVTSRLAASLILIKH 58


>gi|118472166|ref|YP_889490.1| DevR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173453|gb|ABK74349.1| two component transcriptional regulatory protein devr
           [Mycobacterium smegmatis str. MC2 155]
          Length = 211

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A    +  +           LT +E   L  + EG T+ +IA  + ++  TV NY++ ++
Sbjct: 130 ATALMSKLRGDAERSDPLSGLTQQERVLLDLLGEGLTNKQIAARMFLAEKTVKNYVSRLL 189

Query: 226 RKTATKTRSGAIAYAVR 242
            K   + R+ A  +A +
Sbjct: 190 AKLGMERRTQAAVFASK 206


>gi|116250399|ref|YP_766237.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255047|emb|CAK06121.1| putative GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 254

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + T RE + L  +  G ++  IA  L +S +TV  ++  IMRK   + R+  +A  ++ 
Sbjct: 186 DFTPREADVLAELQCGCSNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVARLIQR 244


>gi|111026885|ref|YP_708863.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110825424|gb|ABH00705.1| protein kinase/ transcriptional regulator, LuxR family [Rhodococcus
            jostii RHA1]
          Length = 1089

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 187  TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            T RE E    I+EG T+ EIA  L IS  T   ++  ++ K    +R+    +
Sbjct: 1028 TKREGEVADLIAEGLTNREIAARLAISPRTAQGHVEHLLSKLGFNSRAQIATW 1080


>gi|557022|gb|AAA50358.1| putative transcription factor; similar to E. coli NarL, Swiss-Prot
           Accession Number P10957 [Nostoc sp. PCC 7120]
          Length = 219

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 17/206 (8%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           M  + EY G  H+ +    L   +      +   P     C+  +   +Y  V++R    
Sbjct: 21  MDKIGEYFGVQHWGIY---LIDSESKADTETQSIPAV---CLESNPVGRY--VVERHAPA 72

Query: 109 FCPVFHTLPENITPPAGMDNRYC---SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
              +  T  +        D+ +     +  D   I                + L ++  L
Sbjct: 73  HEQLILTPEDWKDFCPRHDHGHVMTGPIICDGRLIGTLNFARDKGKPAFTANDLADLSAL 132

Query: 166 AAYQANMF-----KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
             + +                    LT RE++    +++G T+ EIA  L I++N+V   
Sbjct: 133 CIHLSAKLATLKTNPNIFKSSSPSPLTPRELQIAELVAQGLTNAEIAEKLWITQNSVKQA 192

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +  + RK     R+  +A  +++ ++
Sbjct: 193 LKRMFRKLGVSARAEMVAR-LQDQLI 217


>gi|108805968|ref|YP_645905.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108767211|gb|ABG06093.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 368

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + LT RE E    ++ G ++ +I+  L IS +TV N++  +  K    +R   +
Sbjct: 301 YGLTPREEEIAGLVARGLSTRQISRTLFISEHTVQNHLRGVFEKVGVHSRRELV 354


>gi|257890986|ref|ZP_05670639.1| response regulator [Enterococcus faecium 1,231,410]
 gi|257827346|gb|EEV53972.1| response regulator [Enterococcus faecium 1,231,410]
          Length = 202

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +   M     +        + RE+  +  ++ GK + EIA  L +S  TV NYI+ +
Sbjct: 129 IETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQL 188

Query: 225 MRKTATKTRSGAIA 238
           + K   + R+    
Sbjct: 189 LEKLDLRDRTQLAI 202


>gi|297193217|ref|ZP_06910615.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720487|gb|EDY64395.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 221

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +       A    R   L   V  +  G  LL P     + +RL E    A  +   
Sbjct: 96  FDAIMAGAAGYALKAIRGSELLAAVRDVAAGRSLLDPAATARVLERLREGNRPAGDE--- 152

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                    +   LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + 
Sbjct: 153 ---------RLANLTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMER 203

Query: 233 RSGAIAYAVR 242
           R+ A AY  R
Sbjct: 204 RAQAAAYVAR 213


>gi|330836852|ref|YP_004411493.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
 gi|329748755|gb|AEC02111.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM
           17374]
          Length = 180

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S+    G+   L+ RE +  +  + G T  EIA  LG+  +TV  +  +I RKT   + S
Sbjct: 109 SFHSPSGEAICLSARECQVASLTANGMTCKEIAWELGVKESTVAAHRRNIYRKTGLSSSS 168

Query: 235 GAIAYAVRNNI 245
              A+ VR+ I
Sbjct: 169 QLAAWVVRSEI 179


>gi|153947769|ref|YP_001402787.1| DNA-binding response regulator EsrB [Yersinia pseudotuberculosis IP
           31758]
 gi|170026132|ref|YP_001722637.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|152959264|gb|ABS46725.1| putative DNA-binding response regulator EsrB [Yersinia
           pseudotuberculosis IP 31758]
 gi|169752666|gb|ACA70184.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
          Length = 210

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 15/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  ++  + L   D    ++Q       P    L    T  A  +  Y S TF+   +  
Sbjct: 49  PDMVILDLGLPGMDGLDVIIQLLR--RWPAMKIL----TLTARNEEHYASRTFNSGALGY 102

Query: 143 GL------MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            L      +L+     + +  R  +  L A+    + +  D        LT RE + L  
Sbjct: 103 VLKKSPQQILMAAIQTVAIGKRYIDPALDASMVIKLTQGSD---NTPPVLTPRERQILKL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EG  +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 160 ITEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|114563476|ref|YP_750989.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114334769|gb|ABI72151.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 220

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D    +  +LT ++   L   +EG  + +IA   G+S  T+  +  +I RK   + R+
Sbjct: 144 PTDKMANRLSDLTPQQYRVLQMFAEGLLNKQIAYDFGVSEATIKAHATAIFRKLGVRNRT 203

Query: 235 GAIAYAVRN 243
            A+  A++ 
Sbjct: 204 QAVI-ALQQ 211


>gi|327480893|gb|AEA84203.1| DNA-binding response regulator AgmR [Pseudomonas stutzeri DSM 4166]
          Length = 221

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  + + +   A++   +  +      +  D +      + +  +   S      +
Sbjct: 95  ITYGAVGFITKSSPRAQMTEAIEQILNGNVYLPSDIIRSQKSPSRHSHHSEPSIPPELLQ 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 155 --ALTRKQLLVLERMTKGESNKQIAYNLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|182435857|ref|YP_001823576.1| LuxR family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464373|dbj|BAG18893.1| putative LuxR-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 255

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 73/207 (35%), Gaps = 4/207 (1%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVR--WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
            VS  +    L    G  H L VR   +L  E + D    S    D+V    +    +  
Sbjct: 51  RVSVAVYAEDLILQTGMIHQLRVRPEIELLPEAEADRAQVSLVVVDMVDEPTVQLLHRLQ 110

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
                 T L    F +         G+         D  R+   +  +     ++  D L
Sbjct: 111 RNTSTRTGLVVGFFESGALQTMIECGVAAVLRRGEADQDRLVHLVRAMANGEGVLPGDLL 170

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            +  LL    +      D        LT RE E +  +SEG  + EIA     S  TV N
Sbjct: 171 GK--LLDHVSSLQRTVLDPRGLTLSTLTAREAEMIRLVSEGCDTAEIAQKTSYSERTVKN 228

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +  +   + R+ A+ YA+R+ ++
Sbjct: 229 VLHEVATRLELRNRAHAVGYAMRHGLI 255


>gi|70729573|ref|YP_259311.1| DNA-binding response regulator AgmR [Pseudomonas fluorescens Pf-5]
 gi|68343872|gb|AAY91478.1| DNA-binding response regulator AgmR [Pseudomonas fluorescens Pf-5]
          Length = 221

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 156 LTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|54303009|ref|YP_133002.1| transcriptional regulator MalT [Photobacterium profundum SS9]
 gi|46916437|emb|CAG23202.1| putative malT regulatory protein [Photobacterium profundum SS9]
          Length = 902

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             +  ++R   +     +   +    DV    +   LT RE + L  I  G ++++IA  
Sbjct: 803 REMTSKERNRSVHFDENFVEKLLNLPDVPELIRTSPLTQREWQVLGLIYAGFSNEQIASE 862

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L ++  T+  +I ++ +K     R  AI  A
Sbjct: 863 LDVASTTIKTHIRNLYQKLNIANRQQAINTA 893


>gi|254694986|ref|ZP_05156814.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 245

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 180 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVPNIMKKIGAANRTEVA 231


>gi|254431083|ref|ZP_05044786.1| transcriptional regulator, LuxR family, putative [Cyanobium sp. PCC
           7001]
 gi|197625536|gb|EDY38095.1| transcriptional regulator, LuxR family, putative [Cyanobium sp. PCC
           7001]
          Length = 80

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T  E   L  +  G ++ +IA  L +S  TV ++I+S++ KT  + R+  + +A+
Sbjct: 23  TPAEARVLGLVCRGHSNRDIATALVVSVRTVESHISSLLAKTGCRNRTQLLIWAL 77


>gi|91788297|ref|YP_549249.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91697522|gb|ABE44351.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 246

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E + W+  G T+ EIA  + IS NTV  ++  +  K     R
Sbjct: 184 LTKREWEVVHWVGLGMTNKEIARAMTISDNTVKTHLQHVFGKLKVGRR 231


>gi|284029103|ref|YP_003379034.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283808396|gb|ADB30235.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 924

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S     G D   T +E++ +   + G T+ EIA  + +S  TV  ++  +  K    +R
Sbjct: 849 PSGGRRPGSDVAFTPQELQIMRLAAAGLTNKEIADQIYLSHRTVAAHLYKVFPKLGITSR 908

Query: 234 SGAIAYAVRN 243
              +  A++ 
Sbjct: 909 GQLV-EALKR 917


>gi|224367639|ref|YP_002601802.1| transcriptional regulator (LuxR family protein) [Desulfobacterium
           autotrophicum HRM2]
 gi|223690355|gb|ACN13638.1| transcriptional regulator (LuxR family protein) [Desulfobacterium
           autotrophicum HRM2]
          Length = 202

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAV 208
           K   + +D+   +G+L +    + + +       D   T  E++    + EG+T+ EIA+
Sbjct: 106 KHGPLQQDQKTLVGILESNLLEIVRPFVADMNAMDESFTPMEIQIAHLVREGRTNKEIAL 165

Query: 209 ILGISRNTVNNYIASIMRKTATKTR 233
           IL I+  TV  +  +I RK     +
Sbjct: 166 ILTIAPRTVGFHRENIRRKLGINNK 190


>gi|239820229|ref|YP_002947414.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
 gi|239805082|gb|ACS22148.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 255

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE   L  I++G  + +IA  L ++  T  N+++ IM+K    TR+      ++ 
Sbjct: 197 PLTEREAAVLELIAKGYGNRQIATALNLAEGTAKNHVSRIMQKLHANTRTELAVLVLKK 255


>gi|27375441|ref|NP_766970.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27348578|dbj|BAC45595.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 232

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 166 AAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           AAY+  +         +D      ELT +++  L  +  G  + +IA  L IS  TV  +
Sbjct: 128 AAYRGQVRPQRAAGPAQDLLKRLHELTPQQLRVLEMLKRGLQNKQIAFELKISETTVKVH 187

Query: 221 IASIMRKTATKTRSGAIAYAVR 242
           ++ I+RK    +R+ AI    R
Sbjct: 188 VSDILRKLNVISRTKAIVEMSR 209


>gi|254443862|ref|ZP_05057338.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198258170|gb|EDY82478.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 220

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 175 SYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           S DV   K+    L+ RE + + +++ G T+ EIA  LG+S  TV ++ ++I +K     
Sbjct: 145 SPDVLDQKELLETLSDREKQIVVFVASGMTNKEIAQNLGLSIKTVESHRSNISKKLKIFD 204

Query: 233 RSGAIAYAVRNNIV 246
            +G   +AVR  +V
Sbjct: 205 IAGVTLFAVRTGLV 218


>gi|94312507|ref|YP_585717.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93356359|gb|ABF10448.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 228

 Score = 72.7 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + L  I  G+ + +IAV LG+S  TV  +  ++ RK   + R+  + YAV+ 
Sbjct: 163 LTPRERDILHGIGRGQANKDIAVQLGVSVRTVETHRLNLKRKLGIEGRAELVKYAVQQ 220


>gi|315180669|gb|ADT87583.1| transcriptional regulator UhpA [Vibrio furnissii NCTC 11218]
          Length = 208

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 70/187 (37%), Gaps = 23/187 (12%)

Query: 69  FQEQKLDSIVSSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI------- 120
           F          +  P D+ V  +++ +++   ++L+R  +   P F  +  +I       
Sbjct: 33  FDSASDAFRGLTQMPVDVAVIDISMPDENG-LSLLERLRQ-HDPAFKAIILSIYDSASFV 90

Query: 121 -TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                     Y S     + +   +  +    R +  D L  +            S    
Sbjct: 91  KKALDAGAQGYLSKRCGPSELASAIRTVAAGKRYLCADALVNL------------SNPDI 138

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE+E    + +GK   EIA  L +S  TV+ + A+I+ K         I +
Sbjct: 139 NNVLVDLTKRELEVFDQLIQGKEVKEIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRF 198

Query: 240 AVRNNIV 246
           A++++++
Sbjct: 199 AIQHHLL 205


>gi|298682192|gb|ADI95259.1| PedR1 [Pseudomonas putida]
 gi|313499256|gb|ADR60622.1| Two component LuxR family transcriptional regulator [Pseudomonas
           putida BIRD-1]
          Length = 221

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  + + +   +++   +  +      +  D +       + + N   S+     +
Sbjct: 95  ITYGAVGFITKSSPRSQMIEAIEQILNGNVYLPPDIIRAQKSSTSRRHNDAPSFPPEMLQ 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 155 --ALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|298242216|ref|ZP_06966023.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297555270|gb|EFH89134.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 768

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE E L  +S G +  +IA  L +S NT+  Y   I  K   K+R+ AIA      +
Sbjct: 11  LNEREQEILKRLSTGLSDQQIADELFLSPNTIKWYNRQIYSKLGVKSRTQAIACVKDLGL 70

Query: 246 V 246
           +
Sbjct: 71  L 71


>gi|257867869|ref|ZP_05647522.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257874198|ref|ZP_05653851.1| regulatory protein [Enterococcus casseliflavus EC10]
 gi|257876762|ref|ZP_05656415.1| regulatory protein [Enterococcus casseliflavus EC20]
 gi|257801952|gb|EEV30855.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257808362|gb|EEV37184.1| regulatory protein [Enterococcus casseliflavus EC10]
 gi|257810928|gb|EEV39748.1| regulatory protein [Enterococcus casseliflavus EC20]
          Length = 207

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                          + RE+  +  ++ GK + EIA  L +S  T+ NYI+ ++ K   +
Sbjct: 134 QMMKNQPAIDNQASFSERELAIIKEVAAGKNNKEIADALYLSDGTIRNYISQLLEKLELR 193

Query: 232 TRSGAIAYAVRN 243
            R+    Y  ++
Sbjct: 194 DRTQLAIYYYQH 205


>gi|238765471|ref|ZP_04626390.1| two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238696295|gb|EEP89093.1| two-component response regulator [Yersinia kristensenii ATCC 33638]
          Length = 176

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 152 RIILRDRLWEIGLLAAYQAN----MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           + I  D L E   +A  Q      ++K    +     +L+ RE E  T I +G+TS +IA
Sbjct: 79  KPIDADVLIETISMALDQHEQALVVYKRQASYQQLFNQLSAREREVATLIIQGETSKQIA 138

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAI 237
            IL IS  TV  + A+I  K    + +  I
Sbjct: 139 HILSISPRTVEAHRANIFAKLEVNSLASLI 168


>gi|205357555|ref|ZP_02571444.2| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331191|gb|EDZ17955.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
          Length = 248

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
               I  + L         +RL    +       +  S       +  LT +E E +  +
Sbjct: 135 GHRIIAGISLMRDIPFSSEERLRAQAVQPLLGLAIHDSLQEDNDLESILTAKEREIVGMV 194

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 195 CEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|170699855|ref|ZP_02890886.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|170135237|gb|EDT03534.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
          Length = 210

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 15/161 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           + P  LV  + + EK  +    +        PV         P              V  
Sbjct: 48  NLPACLVLDVRMPEKSGFDVQAELNARGATLPVIFVSGHGDIP------------MSVRA 95

Query: 140 IRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           ++ G +    K     +  +R+     LA  +  + + +     +   LT RE E L  +
Sbjct: 96  LQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHAVDRHHRELRQRLDALTAREKEVLRGV 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK S +IA  L IS  TV+ + ASI  K    + +  + 
Sbjct: 156 VDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAALVR 196


>gi|16263297|ref|NP_436090.1| Response regulator [Sinorhizobium meliloti 1021]
 gi|307304384|ref|ZP_07584135.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|307318091|ref|ZP_07597527.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|14523975|gb|AAK65502.1| Response regulator [Sinorhizobium meliloti 1021]
 gi|306896132|gb|EFN26882.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306902586|gb|EFN33180.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 227

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 6/135 (4%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
               +   L   I            L   V  I  G + + P           E      
Sbjct: 90  RRSDILSALTAGINGYVPKGLGATDLAEAVRAILNGSVYVPPSIAGRASPSEAETPAPGG 149

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              N     + H   +F LT R+ E L  + +G ++ EIA  L +   TV  ++A++ R 
Sbjct: 150 GVQN-----ERHRTIEF-LTPRQREVLQLLVQGFSNKEIARKLKLGEGTVKIHMAALFRS 203

Query: 228 TATKTRSGAIAYAVR 242
              + R  A A   R
Sbjct: 204 LRVRNRQEAAAAGAR 218


>gi|291449531|ref|ZP_06588921.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
 gi|291352478|gb|EFE79382.1| large transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 932

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            L+ RE       S G ++ EIA  L +S  TV +++A  +RK    +R+ 
Sbjct: 875 HLSPRERAVARLASLGLSNREIARELVLSHRTVEHHVARALRKLGVSSRTE 925


>gi|149907604|ref|ZP_01896351.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
 gi|149809274|gb|EDM69203.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
          Length = 197

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ R++  L  +++GK++ ++A  L IS  TV  +  SIM+    KT +  I YA+ + 
Sbjct: 135 KLSSRQISVLQLLAQGKSARQVADELFISPRTVEFHKYSIMKLVNAKTSAELIQYALNHG 194

Query: 245 I 245
           +
Sbjct: 195 L 195


>gi|17548090|ref|NP_521492.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430397|emb|CAD16870.1| putative transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 336

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA--I 237
           + + F++T RE E    + EG +  +IA  LGIS  TV  ++  I+ K   ++RS    I
Sbjct: 271 FQQQFDVTRREGEVCHLLLEGLSDKQIAQALGISYWTVRAHVGRILEKLGIESRSAIGTI 330

Query: 238 AYAVRN 243
             A R 
Sbjct: 331 VLAARR 336


>gi|330505285|ref|YP_004382154.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328919571|gb|AEB60402.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
          Length = 211

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +LT R+ E L  +  G ++ EIA  L IS  TV  +++S++R     TR
Sbjct: 150 QLTPRQQEVLRLVVRGLSNKEIARELAISPFTVRIHVSSLLRTLDVSTR 198


>gi|302553839|ref|ZP_07306181.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
 gi|302471457|gb|EFL34550.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
          Length = 243

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE E    ++EG  +  IA  L I+R T   ++  I+ K     RS   A+
Sbjct: 183 VRLTRRETEVARLVAEGLGNQRIADRLVIARRTAEGHVERILSKLGFSNRSQIAAW 238


>gi|298247828|ref|ZP_06971633.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297550487|gb|EFH84353.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1037

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 121  TPPAGMDNRYCSLTFDVARIRIGLML-LFPKGRIILRDRLWEIGLLAAYQANMF----KS 175
            T    ++  +  L  +  +  + L+  L P  +   + R + + +L     +        
Sbjct: 907  TLTQAVNEGFIRLFLNEGKGLVPLLRSLLPTLQKDKKLRSYALIILRTITQSAGLPIAPV 966

Query: 176  YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             D        L+ +E   L  ++ G T+ +IA  L +S NTV +++  + RK     R  
Sbjct: 967  ADSDNLLFEPLSIQEQRVLRLLAAGWTNKDIAEELIVSVNTVKDHVKHLYRKLGINNRLQ 1026

Query: 236  AIAYAVRN 243
            A   A R+
Sbjct: 1027 A-GEAARH 1033


>gi|332666500|ref|YP_004449288.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335314|gb|AEE52415.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 209

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 14/128 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +           L   +  I++G + + P               +A     
Sbjct: 91  VFDALSAGASGYLLKKTTPEKLIDAIRDIQLGGVAMSPG--------------IARKVLG 136

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            F        +   L+ RE E L  ++ G +   IA  LGIS  TV  +I  I  K    
Sbjct: 137 YFAQKQQRALELERLSPREKEILQHLANGDSQKMIAYDLGISLETVKTHIKRIYEKLQVH 196

Query: 232 TRSGAIAY 239
           + + AIA 
Sbjct: 197 SLAEAIAK 204


>gi|332289326|ref|YP_004420178.1| response regulator FixJ [Gallibacterium anatis UMN179]
 gi|330432222|gb|AEC17281.1| response regulator FixJ [Gallibacterium anatis UMN179]
          Length = 193

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+ +E E L  I EG  + +IA  L IS  TV  + + IM K   K  +  I  A
Sbjct: 134 QLSEKEKEVLALIIEGNINKQIAERLNISVRTVEVHRSHIMEKMNAKNVAELIRKA 189


>gi|329849532|ref|ZP_08264378.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328841443|gb|EGF91013.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 236

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 5/142 (3%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   VF      +       + Y         +   +         I       + L
Sbjct: 92  CKFLVITVFEDRASVLKTLRAGADGYVLKDATSEHLVSYVRSALAGVNPISSRAARHL-L 150

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
             + +         H      L  RE E L  I++G +   +A ++ +S +TV  Y  +I
Sbjct: 151 KISDEGEAQPVTSSHP----PLRPREKEMLEHIAQGLSQKAVARLMNLSPHTVAEYTQNI 206

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK + K+R  A+  A+++ ++
Sbjct: 207 YRKLSVKSRGAAVFEAIQHKLI 228


>gi|256782982|ref|ZP_05521413.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 226

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 56/189 (29%), Gaps = 8/189 (4%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL------FCPVFHTLPEN 119
            +         +V    P   V  + +   +      +  T +          F      
Sbjct: 31  AEAADGHGAVELVRRHRPAVAVLDIRMPGLNGIDAAAEIRTAVPGTGVIMLTTFGEDDYI 90

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYD 177
           +    G    +   + +   +  G+  +      +           L A     +     
Sbjct: 91  LQALGGGAAGFLIKSGEPEELLTGVRAVAGGAAYLSPRVAARVVAHLAATGAGTLAGRRS 150

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE + L  +  G ++ +IA  L +   TV  +++S++ +     R+ A 
Sbjct: 151 AARDRVAALTARERDVLALLGAGLSNGQIARRLHVVEGTVKAHVSSLLSRLGVDNRAAAA 210

Query: 238 AYAVRNNIV 246
             A    I+
Sbjct: 211 VVAHEAGII 219


>gi|114765358|ref|ZP_01444475.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114542338|gb|EAU45367.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseovarius sp. HTCC2601]
          Length = 255

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           DR  E  +L     ++      +   +  LT R+ E L W+ +GKT  +IA I+G+++ T
Sbjct: 161 DRFGEDIMLLNNLLHLKILTLPYIPPNQSLTKRQREALEWVGDGKTMQDIAAIMGLTQAT 220

Query: 217 VNNYIASIMRKTATKTRSGAIAYAV 241
           +  ++         +T + A+A A 
Sbjct: 221 IEKHLRLAREALNVETTAQAVAKAA 245


>gi|126434006|ref|YP_001069697.1| LuxR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|126233806|gb|ABN97206.1| transcriptional regulator, LuxR family [Mycobacterium sp. JLS]
          Length = 876

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             ELT +E    T +++G ++ E+A  L +S  TV  ++  I  K   ++R+   A
Sbjct: 818 HAELTPQEDAVTTLVAQGLSNREVAAELYVSPKTVQYHLTRIYAKLGVRSRTELAA 873


>gi|331010111|gb|EGH90167.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 208

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 10/204 (4%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
             + +  L E  G    ++   D   +     +     P  ++  + + + D    V+ R
Sbjct: 13  IRLAVRMLMERHGYE--VIAETDNGVDAL--QLAREHLPDIVILDIGIPKLDG-LEVIAR 67

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFD--VARIRIGLMLLFPKGRIILRDRLWEI 162
            + +  P F  L      P     R         V + +    LL     ++     +  
Sbjct: 68  LSAMTLP-FKVLILTSQAPGHFSMRCVQAGAAGYVCKKQDLTELLSAIKAVLSGYSYFPN 126

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L   +++M  + +        L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y  
Sbjct: 127 QALHTVRSSMGNASESDMVDR--LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKT 184

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ K    +    I  A RN +V
Sbjct: 185 RLLLKLNAHSLVDLIELAQRNGLV 208


>gi|300785793|ref|YP_003766084.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299795307|gb|ADJ45682.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 888

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 2/109 (1%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWI 197
           +R   +   P+    L  RL  +G    +   +   +           LT RE   L  +
Sbjct: 771 VRFPFVFAPPELIGFLTSRLGGLGTGERFAGEILAVRRRLRTPPMPAPLTERERSVLRLL 830

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              ++ DEIA  L +S NTV  ++  I  K   ++R  A+  A    ++
Sbjct: 831 PTQRSIDEIAEDLTVSPNTVKTHVRGIYAKLDVRSRREAVTIAQERGLL 879


>gi|260174181|ref|ZP_05760593.1| transcriptional regulator [Bacteroides sp. D2]
 gi|315922447|ref|ZP_07918687.1| transcriptional regulator [Bacteroides sp. D2]
 gi|313696322|gb|EFS33157.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 257

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  I +G +S EIA  L IS NTVN +  +I+ K +      A   A
Sbjct: 197 LSEREKEILRCIRKGLSSKEIATTLYISVNTVNRHRQNILEKLSVGNSIEACRAA 251


>gi|170692985|ref|ZP_02884146.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170141983|gb|EDT10150.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 210

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 40/79 (50%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
            +  +F++Y         L+ RE + L  ++ GK+ ++IA    +S  T++ +   +M+K
Sbjct: 130 VEGIVFETYSGDAPPHEILSDREFQVLQMLALGKSLNDIADAFALSAKTISTHKMRLMQK 189

Query: 228 TATKTRSGAIAYAVRNNIV 246
                 +  I YA+R+ +V
Sbjct: 190 LGLANNAELIRYAIRHGLV 208


>gi|153800849|ref|ZP_01955435.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3]
 gi|124123559|gb|EAY42302.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3]
          Length = 208

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               L Q +   +I+    P +    ++L E+ + +N   R   +   ++ +        
Sbjct: 39  AFHALTQAEVDVAIIDISMPDE--NGLSLLERLRQHNP--RFKAIILSIYDSASFVKKAL 94

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y S     + +   +  +    R +  D L  +            S        
Sbjct: 95  DAGAQGYLSKRCGPSELVSAIRTVASGRRYLCADALVNL------------SNPDINNVL 142

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT REVE    + +GK   EIA  L +S  TV+ + A+I+ K         I +A+++
Sbjct: 143 AELTKREVEVFDLLVKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQH 202

Query: 244 NIV 246
           +++
Sbjct: 203 HLL 205


>gi|124005623|ref|ZP_01690462.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
 gi|123988691|gb|EAY28297.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
          Length = 222

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              +T RE E L  I +  T+ EIA  L +S +TV  +   +  K   K   G +  A++
Sbjct: 156 QVNITPREQEVLELILKEYTTQEIADRLFVSIHTVETHRKKLFNKFGVKNVVGLVVRALQ 215

Query: 243 NN 244
             
Sbjct: 216 MR 217


>gi|302340328|ref|YP_003805534.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637513|gb|ADK82940.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 217

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 14/131 (10%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V   L          +     L   +  +  G +L+  K   +L+ R            +
Sbjct: 91  VEQALQHGAAGYLLKNMLSDDLINSIRMVHSGNILISEKVGSVLQQR---------DHND 141

Query: 172 MFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             +  +  + K  +     L+ RE E    + +G ++DEIA +L I+  TV N+I SI  
Sbjct: 142 CTREKNESFTKTRQELLRQLSRREREVYGLMLQGYSNDEIAEMLFIATQTVKNHIRSIYS 201

Query: 227 KTATKTRSGAI 237
           K+    RS  I
Sbjct: 202 KSGFHNRSDII 212


>gi|256821224|ref|YP_003142423.1| two component transcriptional regulator, LuxR family [Anaerococcus
           prevotii DSM 20548]
 gi|256799204|gb|ACV29858.1| two component transcriptional regulator, LuxR family [Anaerococcus
           prevotii DSM 20548]
          Length = 197

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           FK  D H      LT RE+E L  + +G++   IA  L IS  T+ N+IA+I  K  +K 
Sbjct: 122 FKKIDKHIADP--LTKREIEVLKELIKGESKKNIAGRLYISERTLYNHIANIYDKLQSKN 179

Query: 233 RSGAIAYAVRNNIV 246
              A   A+    +
Sbjct: 180 IVEAYNKAMELGYI 193


>gi|261410000|ref|YP_003246241.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261286463|gb|ACX68434.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 201

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++  L+ RE+E L    EG T+ +I+  L ++R TV NY++S ++K    +R  A+  A
Sbjct: 137 EENPLSEREIEMLRLTKEGMTTGDISKALFLTRGTVRNYLSSAIQKLEADSRQQAVTIA 195


>gi|146282635|ref|YP_001172788.1| DNA-binding response regulator AgmR [Pseudomonas stutzeri A1501]
 gi|145570840|gb|ABP79946.1| DNA-binding response regulator AgmR [Pseudomonas stutzeri A1501]
          Length = 221

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  + + +   A++   +  +      +  D +      + +  +   S      +
Sbjct: 95  ITYGAVGFITKSSPRAQMTEAIEQILNGNVYLPSDIIRSQKSPSRHSHHSEPSIPPELLQ 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 155 --ALTRKQLLVLERMTKGESNKQIAYNLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|187920901|ref|YP_001889933.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187719339|gb|ACD20562.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 210

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 40/77 (51%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A +F+++         L+ RE + L  ++ G++ +EIA    +S  T++ +   +M+K  
Sbjct: 132 AMVFETHSGDAPPHEVLSDREFQVLQMLAAGQSINEIAESCSLSAKTISTHKMRLMQKLG 191

Query: 230 TKTRSGAIAYAVRNNIV 246
               +  I YAVR+ +V
Sbjct: 192 LNNNAELIRYAVRHGLV 208


>gi|320325633|gb|EFW81695.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 208

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 10/204 (4%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
             + +  L E  G    ++   D   +     +     P  ++  + + + D    V+ R
Sbjct: 13  IRLAVRMLMERHGYE--VIAETDNDVDAL--QLAREHLPDIVILDIGIPKLDG-LEVIAR 67

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFD--VARIRIGLMLLFPKGRIILRDRLWEI 162
            + +  P F  L      P     R         V + +    LL     ++     +  
Sbjct: 68  LSAMTLP-FKVLILTSQAPGHFSMRCMQAGAAGYVCKQQDLTELLSAIKAVLSGYSYFPN 126

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L   +++M  + +        L+GRE+  L  ++ GKT+ EIA  + +S  TV+ Y  
Sbjct: 127 QALHTVRSSMGNASESDMVDR--LSGREMMVLQQLARGKTNKEIADGMFLSNKTVSTYKT 184

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            ++ K    +    I  A RN +V
Sbjct: 185 RLLLKLNAHSLVDLIELAQRNGLV 208


>gi|261215329|ref|ZP_05929610.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260916936|gb|EEX83797.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 254

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 189 LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVPNIMKKIGAANRTEVA 240


>gi|172062548|ref|YP_001810199.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|171995065|gb|ACB65983.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
          Length = 210

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           + P  LV  + + EK  +   ++        PV         P              V  
Sbjct: 48  NLPACLVLDVRMPEKSGFDVQVELNARGATLPVIFVSGHGDIP------------MSVRA 95

Query: 140 IRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           ++ G +    K     +  +R+     LA  +  + + +     +   LT RE E L  +
Sbjct: 96  LQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHAVDRHHRELRQRLDALTAREKEVLRGV 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK S +IA  L IS  TV+ + ASI  K    + +  + 
Sbjct: 156 IDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAALVR 196


>gi|153811961|ref|ZP_01964629.1| hypothetical protein RUMOBE_02354 [Ruminococcus obeum ATCC 29174]
 gi|149831860|gb|EDM86946.1| hypothetical protein RUMOBE_02354 [Ruminococcus obeum ATCC 29174]
          Length = 206

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-- 183
           +D+ Y      +     G +L      I+   R    G     Q  + K  D+   K+  
Sbjct: 84  LDDEYIVK--ALRLGAKGYLLKQDYASILPALRAVYSGQTVFGQEIVSKIPDLIQKKENF 141

Query: 184 ----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                E+  +E E +  ++ G ++ EIA  + +   TV NY+++I+ K   + R+    +
Sbjct: 142 DYSVCEINEKEKEIIRLVANGYSNKEIAAEMYLGEGTVRNYLSAILDKLQLRDRTQVAVF 201

Query: 240 AVRNN 244
             ++ 
Sbjct: 202 YYKHR 206


>gi|332995301|gb|AEF05356.1| putative LuxR family transcriptional regulator [Alteromonas sp.
           SN2]
          Length = 103

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE++    I EG ++  IA  L IS  TV  + A+I +K    +R+  IA   R
Sbjct: 38  LSKRELQVARKIMEGLSNKAIAAELFISERTVKFHCANIYKKLKISSRTALIASCFR 94


>gi|149912276|ref|ZP_01900849.1| DNA-binding response regulator, LuxR family [Moritella sp. PE36]
 gi|149804646|gb|EDM64703.1| DNA-binding response regulator, LuxR family [Moritella sp. PE36]
          Length = 222

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            PV      +         ++ +  F      + +++       +L  +LW  G     +
Sbjct: 83  VPVVVISAYSDETIIAKAMQHGASGFVPKSESVAVIISAISS--VLAGQLWVPGTFEKPK 140

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            ++  + DV   K   LT +E   L   SEG  + +I   L ++  TV  + ++I RK  
Sbjct: 141 QDVNATADVAIAK---LTAQEYRILMMFSEGLLNKQIGDKLCVAEATVKAHASAIFRKLN 197

Query: 230 TKTRSGAI 237
            + R+ A 
Sbjct: 198 VRNRTQAA 205


>gi|39995364|ref|NP_951315.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982126|gb|AAR33588.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
          Length = 215

 Score = 72.7 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 12/200 (6%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK--YYNVLQRPTELF 109
           LT  + +   + V       ++  ++  S  P  +V  + + E +      ++ R     
Sbjct: 18  LTMILESQSDIAVIGQAGDGREAIAMAESLKPNVVVMDITMPELNGIEAARLIAREQPAT 77

Query: 110 CPVFHTLPENITPP----AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             V  ++ + +             Y       A +   +  +    R   R       + 
Sbjct: 78  KIVILSMHDTLEHVYRALQAGARGYLLKESAGAEVTDAVRTVMRGHRYFGRGSRLPSDMH 137

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
            +  A++ KS          L+ RE E L  + EGK S EIA IL +S  ++  Y + +M
Sbjct: 138 RSACADLPKSP------LDSLSQREREVLQLVVEGKKSSEIAEILSLSPKSIETYRSRLM 191

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K         + +A+ + +
Sbjct: 192 IKLGITNIPSLVKFALLHGV 211


>gi|329924857|ref|ZP_08279807.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328940393|gb|EGG36719.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 223

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 12/138 (8%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L    F      +   A   N Y     D  ++   +        I+         + A 
Sbjct: 87  LILTTFIETDYIVEGMAHGANGYMLKDMDADKMIASIRDTIAGQFILPAP------VAAK 140

Query: 168 YQANMFKSYDVHWG------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             A M +  + H G          LT RE E    + +G  + EIA +L I+  T  NYI
Sbjct: 141 LAARMNRMSEGHSGLRKNRLDRIRLTEREEELARLMVQGLNNREIADMLHIAEGTARNYI 200

Query: 222 ASIMRKTATKTRSGAIAY 239
           +++  K     R+ AI  
Sbjct: 201 SNLYSKLEVVDRAQAIVR 218


>gi|167622115|ref|YP_001672409.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167352137|gb|ABZ74750.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 213

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y     +   +   + L      +I          L    A   +S      +  EL
Sbjct: 100 TDGYLLKDSEPEELIEKIHLALQGEFVISSP-------LTQILAQSLRSGGKKVSQLEEL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE++ +  I+ GK++ EIA  LGI+ +TV  ++ ++++K   K+R   + +AV N I
Sbjct: 153 TQRELQIVKLIASGKSNKEIANKLGITDSTVKVHVKNLLKKLTLKSRVEVVLWAVENKI 211


>gi|146305468|ref|YP_001185933.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
 gi|145573669|gb|ABP83201.1| regulatory protein, LuxR [Pseudomonas mendocina ymp]
          Length = 884

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT +++  L  + EG ++ +IA  + ++ + +  ++  I        R+ A   A R
Sbjct: 821 DALLTRKQIAVLRLVKEGCSNKQIATNMHVTEDAIKWHMRKIFATLNVVNRTQATIEAER 880

Query: 243 NNIV 246
             I+
Sbjct: 881 QGII 884


>gi|29834041|ref|NP_828675.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29611166|dbj|BAC75210.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +  LT RE+  L+  + G +  EIA  L +S  TV NY+++I RKT  + R  AI 
Sbjct: 158 AAEMPLTRRELSVLSLAAGGASVAEIAGSLHLSHGTVRNYMSAITRKTGARNRIDAIR 215


>gi|114561787|ref|YP_749300.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333080|gb|ABI70462.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 210

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T +E + L+ I  G T++E+A  L IS NTV  ++ +I +KT  K R    A+A 
Sbjct: 155 TKKEQQVLSLILHGLTNEEMAKELNISVNTVKMHVQNIYKKTKIKNRGQLFAFAA 209


>gi|328554812|gb|AEB25304.1| ComA [Bacillus amyloliquefaciens TA208]
          Length = 214

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K+      +   LT RE   L  + +G T+ EIA  L +S+ ++   + SI  K    +R
Sbjct: 142 KTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSR 201

Query: 234 SGAIAYA 240
           + A+  A
Sbjct: 202 TEAVLIA 208


>gi|298504366|gb|ADI83089.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 214

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 12/172 (6%)

Query: 80  SDWPFDLVRCMALSEKDK--YYNVLQRPTELFCPVFHTLPENITPP----AGMDNRYCSL 133
           S  P  +V  + + E +      ++ R       V  ++ + +             Y   
Sbjct: 45  SLKPNVVVMDITMPELNGIEAARLIAREQPATKIVILSMHDTLEHVYRALQAGARGYLLK 104

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
               A +   +  +    R   R       +  +  A++ KS          L+ RE E 
Sbjct: 105 ESAGAEVTDAVRTVMRGHRYFGRGSRLPSDMHRSACADLPKSP------LDSLSQREREV 158

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  + EGK S EIA IL +S  ++  Y + +M K         + +A+ + +
Sbjct: 159 LQLVVEGKKSSEIAEILSLSPKSIETYRSRLMIKLGITNIPSLVKFALLHGV 210


>gi|256424138|ref|YP_003124791.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256039046|gb|ACU62590.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM
           2588]
          Length = 255

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L   ++G   ++IA  + ++ +TV  Y   I  +        A+AYAV   +
Sbjct: 195 LTEREVEVLRLHAQGLNINQIAERIFVAPDTVKYYRRRIFERLEVSNIVEALAYAVNAKL 254

Query: 246 V 246
           +
Sbjct: 255 I 255


>gi|239980726|ref|ZP_04703250.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 204

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F  +    +       R   L   V ++  G  LL P     + +RL           + 
Sbjct: 80  FDAIMAGASGYVLKAIRGADLLDAVRQVAAGHSLLDPAATARVLERLR---------GHG 130

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               D        LT +E   L  I EG T+  I   L ++  T+ NY+++++ K   + 
Sbjct: 131 TPGDDDRLS---GLTEQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSALLAKLGMER 187

Query: 233 RSGAIAYAVRNN 244
           RS A AY  R +
Sbjct: 188 RSQAAAYVARMH 199


>gi|157376272|ref|YP_001474872.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157318646|gb|ABV37744.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 220

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D    K   L+ R+   L   ++G  + +IA  LG+S  T+  + ++I  K    TR+
Sbjct: 140 EADSMSSKIMSLSPRQHRILMMFADGMLNKQIAYDLGLSEATIKAHASAIFLKLGVHTRT 199

Query: 235 GAIA 238
            A+ 
Sbjct: 200 QAVI 203


>gi|149203381|ref|ZP_01880351.1| two component transcriptional regulator, LuxR [Roseovarius sp.
           TM1035]
 gi|149143214|gb|EDM31253.1| two component transcriptional regulator, LuxR [Roseovarius sp.
           TM1035]
          Length = 221

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 13/190 (6%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           +S F +   + FQE   +S +  + P D+V        D     ++    +   +    P
Sbjct: 44  SSDFNVALCNSFQEA--ESFIKENGPIDVV------LLDLVMPDMKGMDSIASIIKLNEP 95

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLML-LFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
             +   +G  N +  L   +    +GL+    P   +    RL   G +    +    S 
Sbjct: 96  GAVVLFSGTANPH-DLNAALELGCMGLIPKSLPLKSLESAIRLVSTGEVFVRASQNEPS- 153

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G     T R++  L+ I+EGKT+ EIA ++ +S  +V +Y+  I        R+ A
Sbjct: 154 --AKGSTESFTERDLLVLSKIAEGKTNKEIAWMIQVSEVSVKSYVRKICMILGATNRASA 211

Query: 237 IAYAVRNNIV 246
              A +  I+
Sbjct: 212 AVRAKQLGII 221


>gi|91786900|ref|YP_547852.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696125|gb|ABE42954.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 177

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ R+ + L  + +G ++ +IA  L IS +TV  ++  + R+   K+RS A   A    
Sbjct: 116 KLSKRQKQLLVMLDKGMSNRDIAEELQISEHTVKVHLWRLFRRLNVKSRSQASHLARTQG 175

Query: 245 IV 246
           ++
Sbjct: 176 LL 177


>gi|325830056|ref|ZP_08163513.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|325487523|gb|EGC89961.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 486

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              FELT RE E L +++ G+++  IA  L IS NTV  +I  +  KT   ++   ++  
Sbjct: 417 AARFELTPREREILGYLARGRSARFIAETLIISENTVWAHIKRVYAKTGVHSKQELMSVV 476

Query: 241 VRNN 244
            R  
Sbjct: 477 ERQG 480


>gi|296284686|ref|ZP_06862684.1| LuxR family transcriptional regulator protein [Citromicrobium
           bathyomarinum JL354]
          Length = 203

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  ++ G ++  I + LGIS  TV  + A+++ K    + + A+      +
Sbjct: 133 HLSPREGEVLARMAGGHSNKVIGIELGISPRTVEIHRANMLSKLGACSSTEALRMYFEEH 192

Query: 245 IV 246
           ++
Sbjct: 193 LL 194


>gi|294665170|ref|ZP_06730471.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605083|gb|EFF48433.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 236

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    + +++D+ +    ++       +           LT RE E +   SEG ++ +I
Sbjct: 112 LLRAIQCVIQDQTYISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S  TV  +  + M K   ++ +    YA+   +
Sbjct: 172 ANRLHLSVKTVGTHRENCMLKLNIQSIAQLTRYAIAQGL 210


>gi|239942524|ref|ZP_04694461.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988988|ref|ZP_04709652.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 206

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 22/189 (11%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTL 116
           L+V  +     +  ++  +  P   V  + +   D          E           H  
Sbjct: 32  LVVVAEAASGPEALAMALAHRPDVAVLDLQMPGADGVKVATSLRAELPDCRTMIVTSHGR 91

Query: 117 PENITPPAGMD-NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           P ++          +   T    R+   +  +    R +  +       LAA        
Sbjct: 92  PGHLKRALAAGVRGFVPKTVSARRLAEIIRTVHAGNRYVDPE-------LAA-------- 136

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D     D  LT RE E L   ++G    EIA    +S+ TV NY++S   K   + R  
Sbjct: 137 -DAISAGDSPLTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAASKIGAENRHT 195

Query: 236 AIAYAVRNN 244
           A+  A    
Sbjct: 196 AVRLARERG 204


>gi|91777231|ref|YP_552439.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91689891|gb|ABE33089.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 203

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L +++ G ++ +IA  L +S  TV+ Y + I  K    + +G I +A  + +
Sbjct: 142 LSAREVEVLQYLARGVSNRDIAGRLSLSDKTVSTYKSRIQEKLGLSSLAGLIEFATSHRL 201

Query: 246 V 246
           +
Sbjct: 202 I 202


>gi|308174858|ref|YP_003921563.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307607722|emb|CBI44093.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
          Length = 214

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K+      +   LT RE   L  + +G T+ EIA  L +S+ ++   + SI  K    +R
Sbjct: 142 KTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSR 201

Query: 234 SGAIAYA 240
           + A+  A
Sbjct: 202 TEAVLIA 208


>gi|296285195|ref|ZP_06863193.1| LuxR family transcriptional regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 186

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   LT R+ ECL W++ GKT+ E A+IL IS  TV  ++     +     +   +  A
Sbjct: 109 EKVPSLTDRQRECLLWVARGKTAAETAMILEISTETVIQHLKMARERYQVHCKQSLVVAA 168

Query: 241 VRNNIV 246
           + + ++
Sbjct: 169 LFDGLI 174


>gi|154687277|ref|YP_001422438.1| ComA [Bacillus amyloliquefaciens FZB42]
 gi|126362996|emb|CAM35814.1| two-component response regulator ComA [Bacillus amyloliquefaciens
           FZB42]
 gi|154353128|gb|ABS75207.1| ComA [Bacillus amyloliquefaciens FZB42]
          Length = 214

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K+      +   LT RE   L  + +G T+ EIA  L +S+ ++   + SI  K    +R
Sbjct: 142 KTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSR 201

Query: 234 SGAIAYA 240
           + A+  A
Sbjct: 202 TEAVLIA 208


>gi|313499034|gb|ADR60400.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 127

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE+E L W+++G T+ EIA  + +S  TV N I + + K     R  A+  A+R  I
Sbjct: 17  LAPRELEALLWVAQGLTTKEIARQMAVSPGTVANRIEAALFKLEAGRRIEAVTKAMRQQI 76

Query: 246 V 246
           +
Sbjct: 77  I 77


>gi|298292643|ref|YP_003694582.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929154|gb|ADH89963.1| transcriptional regulator, LuxR family [Starkeya novella DSM 506]
          Length = 284

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL---MLLFPKGRIILRDRLWEI 162
             L    F    E  T P   +    S    +  I +     +L     R+I R    + 
Sbjct: 105 RALRESDFFGEEEFATLPIAREVFLPSRARRIMSIVMQNEDYVLTISGHRVIGRAAFSDR 164

Query: 163 G--LLAAYQANMFKSYDVHWGKDF--------------ELTGREVECLTWISEGKTSDEI 206
              LL AY+A++ +SY     +                ELT R++E  +W++ GK++++I
Sbjct: 165 QRDLLEAYRAHVLRSYRQACDRTLASMTPTDRLRIAFPELTPRQLEVASWVARGKSNEDI 224

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           A IL +   T+  ++ +I  K     R      A
Sbjct: 225 ATILDVGIETIKAHVKAIHAKIGADGRLAIAVMA 258


>gi|228964507|ref|ZP_04125619.1| hypothetical protein bthur0004_13540 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795209|gb|EEM42703.1| hypothetical protein bthur0004_13540 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 176

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 14/148 (9%)

Query: 83  PFDLVRCMALSEKDKYYN----VLQRPTELFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
           P  ++  + + E D        + + P      V  F    +           Y   T  
Sbjct: 37  PDIILMDLVMDEMDGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSR 96

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +   +    ++      E  +     + M +  +    +  ELT RE E L  
Sbjct: 97  ASDIADAVRATYDGETVL------EPKVTGKMMSRMRQKKEQPLHE--ELTERESEILLL 148

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASI 224
           I+EGK++ EIA  L I+  TV  ++++I
Sbjct: 149 IAEGKSNQEIADELFIALKTVKTHVSNI 176


>gi|215425604|ref|ZP_03423523.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis
           T92]
          Length = 218

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 160 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 217


>gi|254473974|ref|ZP_05087367.1| two-component system regulatory protein [Pseudovibrio sp. JE062]
 gi|211956863|gb|EEA92070.1| two-component system regulatory protein [Pseudovibrio sp. JE062]
          Length = 268

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT R+   LT++ EGK + +IA  LGIS  TV +++++++      +RS  +A      
Sbjct: 160 NLTRRQATILTYLKEGKLNKQIAHELGISEATVKHHVSALLSTLGFYSRSQLVAMINELG 219

Query: 245 I 245
           I
Sbjct: 220 I 220


>gi|6226550|sp|P17051|ALKS_PSEOL RecName: Full=HTH-type transcriptional regulator AlkS
 gi|4732040|gb|AAD28565.1|AF118921_2 AlkS protein [alk-system cloning vector pSPZ2Not]
 gi|4732042|gb|AAD28566.1|AF118922_1 AlkS protein [xylene oxygenase expression vector pSPZ3]
 gi|5824157|emb|CAB54064.1| alkBFGHJKL regulator [Pseudomonas putida]
 gi|10945177|emb|CAC14215.1| AlkS protein [synthetic construct]
 gi|12667075|emb|CAC28147.1| AlkS protein [synthetic construct]
 gi|12667079|emb|CAC28150.1| AlkS protein [synthetic construct]
 gi|16040918|emb|CAC93941.1| AlkS protein [Expression vector pCom11]
          Length = 882

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT +++  L  + EG ++ +IA  + ++ + +  ++  I        R+ A   A R
Sbjct: 819 DALLTRKQIAVLRLVKEGCSNKQIATNMHVTEDAIKWHMRKIFATLNVVNRTQATIEAER 878

Query: 243 NNIV 246
             I+
Sbjct: 879 QGII 882


>gi|146277185|ref|YP_001167344.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555426|gb|ABP70039.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 226

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++ + L  I EG+ + +IA  L I+  TV  ++ +IMRK   ++R+ A+
Sbjct: 159 LTRQQAKILQLICEGRLNKQIAYDLTIAETTVKAHVTAIMRKLGVQSRTQAV 210


>gi|328913171|gb|AEB64767.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 214

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K+      +   LT RE   L  + +G T+ EIA  L +S+ ++   + SI  K    +R
Sbjct: 142 KTSSSPQSEQDRLTPRERHILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSR 201

Query: 234 SGAIAYA 240
           + A+  A
Sbjct: 202 TEAVLIA 208


>gi|258650739|ref|YP_003199895.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553964|gb|ACV76906.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 215

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 16/135 (11%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +     D R        A I   ++ +     ++  +       LA   A 
Sbjct: 96  VFRALEVGASGYLSKDARR-------AEIVDAVLTVSRGKTVVPPE-------LAGSLAQ 141

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +      G    L+ RE++ L   + G++  ++A  L I  +TV  +   +  K    
Sbjct: 142 EIRLRAQPTGP--VLSERELQVLRGFARGQSIPQLAKELYIGASTVKTHTQRLYEKLGVS 199

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A+A A+R  ++
Sbjct: 200 DRAAAVAEAMRRGLL 214


>gi|326776481|ref|ZP_08235746.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656814|gb|EGE41660.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
          Length = 249

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 73/207 (35%), Gaps = 4/207 (1%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVR--WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
            VS  +    L    G  H L VR   +L  E + D    S    D+V    +    +  
Sbjct: 45  RVSVAVYAEDLILQTGMIHQLRVRPEIELLPEAEADRAQVSLVVVDMVDEPTVQLLHRLQ 104

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
                 T L    F +         G+         D  R+   +  +     ++  D L
Sbjct: 105 RNTSTRTGLVVGFFESGALQTMIECGVAAVLRRGEADQDRLVHLVRAMANGEGVLPGDLL 164

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            +  LL    +      D        LT RE E +  +SEG  + EIA     S  TV N
Sbjct: 165 GK--LLDHVSSLQRTVLDPRGLTLSTLTAREAEMIRLVSEGCDTAEIAQKTSYSERTVKN 222

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +  +   + R+ A+ YA+R+ ++
Sbjct: 223 VLHEVATRLELRNRAHAVGYAMRHGLI 249


>gi|291445985|ref|ZP_06585375.1| luxR family two component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291348932|gb|EFE75836.1| luxR family two component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 200

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 22/189 (11%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-----LFCPVFHTL 116
           L+V  +     +  ++  +  P   V  + +   D          E           H  
Sbjct: 26  LVVVAEAASGPEALAMALAHRPDVAVLDLQMPGADGVKVATSLRAELPDCRTMIVTSHGR 85

Query: 117 PENITPPAGMD-NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           P ++          +   T    R+   +  +    R +  +       LAA        
Sbjct: 86  PGHLKRALAAGVRGFVPKTVSARRLAEIIRTVHAGNRYVDPE-------LAA-------- 130

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D     D  LT RE E L   ++G    EIA    +S+ TV NY++S   K   + R  
Sbjct: 131 -DAISAGDSPLTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAASKIGAENRHT 189

Query: 236 AIAYAVRNN 244
           A+  A    
Sbjct: 190 AVRLARERG 198


>gi|222870082|gb|EEF07213.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + L  I  G+ + +IAV LG+S  TV  +  ++ RK   + R+  + YAV+ 
Sbjct: 261 LTPRERDILHGIGRGQANKDIAVQLGVSVRTVETHRLNLKRKLGIEGRAELVKYAVQQ 318


>gi|171319877|ref|ZP_02908957.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171094864|gb|EDT39896.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
          Length = 210

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 15/161 (9%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           + P  LV  + + EK  +    +        PV         P              V  
Sbjct: 48  NLPACLVLDVRMPEKSGFDVQAELNARGATLPVIFVSGHGDIP------------MSVRA 95

Query: 140 IRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           ++ G +    K     +  +R+     LA  +  + + +     +   LT RE E L  +
Sbjct: 96  LQNGAIDFVEKPYNSQQMLERVQRALRLAQQRHAVDRHHRELRQRLDALTAREKEVLRGV 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK S +IA  L IS  TV+ + ASI  K    + +  + 
Sbjct: 156 VDGKGSKQIASDLSISVKTVDVHRASIKEKLGATSIAALVR 196


>gi|163743513|ref|ZP_02150891.1| transcriptional regulatory protein [Phaeobacter gallaeciensis 2.10]
 gi|161383216|gb|EDQ07607.1| transcriptional regulatory protein [Phaeobacter gallaeciensis 2.10]
          Length = 270

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+GRE   LT + +G T+  IA  L I   TV  ++ +  RK   K R+ A  +A
Sbjct: 210 LSGREWLILTKLIDGATNKSIANELSICEATVKVHLRTCFRKIGAKNRTQAAIWA 264


>gi|149369619|ref|ZP_01889471.1| two component transcriptional regulator, LuxR family protein
           [unidentified eubacterium SCB49]
 gi|149357046|gb|EDM45601.1| two component transcriptional regulator, LuxR family protein
           [unidentified eubacterium SCB49]
          Length = 210

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 22/191 (11%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL---FCPVFHTLPE 118
           L+   +  QE    +++    P   +  + +   +    V ++ +E       +F TL +
Sbjct: 30  LIGSANDGQEAF--NLILEKKPNIAILDIQMPFMNG-IEVAKKCSEQAPNTKVIFITLYK 86

Query: 119 NITPPAGMDN----RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                   +N     Y    F +  I   L ++    +        +I  L         
Sbjct: 87  EKELYDKANNLNIFGYILKEFALEEIETCLNIVARGEQYYSP----KIQKLLGVTHGKND 142

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             DV       LT  E + L  I+  KT+ EIA +L IS  TV  + ++I+ K   + ++
Sbjct: 143 ILDV-------LTPSERKILKLIATDKTNKEIASLLFISHRTVEKHRSNIILKLQLEPKT 195

Query: 235 -GAIAYAVRNN 244
              + +A  NN
Sbjct: 196 NSLLIWAKENN 206


>gi|146306971|ref|YP_001187436.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145575172|gb|ABP84704.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 221

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 156 LTRKQLLVLERMTKGESNKQIAYSLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|56415066|ref|YP_152141.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363995|ref|YP_002143632.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129323|gb|AAV78829.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095472|emb|CAR61035.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 227

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E +  + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 162 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|158317365|ref|YP_001509873.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112770|gb|ABW14967.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec]
          Length = 347

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 163 GLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            +LA +  N+ +     +       +L+ RE + +  ++EG+++ ++A  L IS +TV +
Sbjct: 252 AVLARHLGNLLRFYIRVNPGPAVTAKLSARERDVVRLVAEGQSNRQVAEALCISIDTVKH 311

Query: 220 YIASIMRKTATKTRSGAI 237
           ++   +  T    R+   
Sbjct: 312 HLTHALVATGCSNRTQLA 329


>gi|84498472|ref|ZP_00997242.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
 gi|84381215|gb|EAP97099.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
          Length = 914

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L  R W   + A  +A    +     G   +LT RE++    ++EG+T+ E A  L +S 
Sbjct: 824 LGARRWSDVVSAELEATGLTARARTAGPVVDLTARELQIAELLAEGRTTRETAAALFLSP 883

Query: 215 NTVNNYIASIMRKTATKTRSGA 236
            TV  ++  I  K    +R+  
Sbjct: 884 KTVEYHLRHIYTKLDITSRAEL 905


>gi|332662577|ref|YP_004445365.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331391|gb|AEE48492.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 231

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +D  LT RE + L  I E  T+ EIA  L IS  TV  +  +++ K   +  +G +  A+
Sbjct: 148 EDRRLTKREQQILGLIVEEYTNQEIAEELFISIPTVETHRKNLILKMGVRNTAGLVREAI 207


>gi|330830693|ref|YP_004393645.1| two-component system response regulator, LuxR family [Aeromonas
           veronii B565]
 gi|328805829|gb|AEB51028.1| Two-component system response regulator, LuxR family [Aeromonas
           veronii B565]
          Length = 214

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   LT ++ + L  + +G  + +IA  L +S  T+  +I +I RK   K R+ A+  
Sbjct: 146 ASKLASLTPQQYKVLIMLRDGSLNKQIAWELNVSEATIKAHITAIFRKLGVKNRTQAVI- 204

Query: 240 AVRN 243
           A++ 
Sbjct: 205 ALQQ 208


>gi|83749846|ref|ZP_00946815.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|207744706|ref|YP_002261098.1| two component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83723483|gb|EAP70692.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|206596113|emb|CAQ63040.1| two component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 232

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V  ++          D+    +  ++  +  G   + P     +  R  + G  A   A+
Sbjct: 101 VMRSIEAGAAGYLLKDSSAARILDEIRSLASGGSPISPIIARQILARFRQGG--ARGAAD 158

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         L+ RE E L  I++G T+ EIA ++ +S  TV  ++  I  K    
Sbjct: 159 EAPPASAASPL---LSAREKEVLDLITKGFTTQEIAKLMALSHFTVRTFVRRIYSKLKVT 215

Query: 232 TRSGAIAYAVRNNIV 246
           +++ AI  A    ++
Sbjct: 216 SKAEAIYEARTLGLL 230


>gi|317489643|ref|ZP_07948147.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911237|gb|EFV32842.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 509

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              FELT RE E L +++ G+++  IA  L IS NTV  +I  +  KT   ++   ++  
Sbjct: 440 AARFELTPREREILGYLARGRSARFIAETLIISENTVWAHIKRVYAKTGVHSKQELMSVV 499

Query: 241 VRNN 244
            R  
Sbjct: 500 ERQG 503


>gi|307328696|ref|ZP_07607868.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306885645|gb|EFN16659.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 159

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V        DK     +    +           +      +          AR    +  
Sbjct: 3   VVDTDSPAADKAARKGEWGKFVASASGEGGDCGLLVLVNSERPGPLRRAHEARALGYVDK 62

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
             P  R+I  + +  +     Y  +    Y         LT RE+  L+  ++G +  EI
Sbjct: 63  DAPPQRLI--EAIRRVARKERYVDDAL-GYGFLQAAKIPLTERELGVLSLAADGASIPEI 119

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           A  L +S  T+ NY+A+I RKT  + R  AI 
Sbjct: 120 ARTLHLSTGTIRNYLAAITRKTGARNRVDAIR 151


>gi|229173813|ref|ZP_04301353.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228609663|gb|EEK66945.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 186

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT  E + L  + +G    EIA +L  S  T++N+I  +  K    +   A+   ++  
Sbjct: 121 ELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTNGIKLG 180

Query: 245 IV 246
            +
Sbjct: 181 YI 182


>gi|227875302|ref|ZP_03993444.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269978189|ref|ZP_06185139.1| sensory transduction protein LiaR [Mobiluncus mulieris 28-1]
 gi|306818564|ref|ZP_07452287.1| LuxR family DNA-binding response regulator [Mobiluncus mulieris
           ATCC 35239]
 gi|307701046|ref|ZP_07638071.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|227844207|gb|EEJ54374.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269933698|gb|EEZ90282.1| sensory transduction protein LiaR [Mobiluncus mulieris 28-1]
 gi|304648737|gb|EFM46039.1| LuxR family DNA-binding response regulator [Mobiluncus mulieris
           ATCC 35239]
 gi|307614041|gb|EFN93285.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 217

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +S   H      LT  E + L  I +G ++ EI   LG++  TV N+I +++ K   +
Sbjct: 135 VTRSSSKHADPTESLTPTERKILNLIGDGLSNREIGESLGVAEKTVKNHITALLSKMGLQ 194

Query: 232 TRSGAIAY 239
            R+   A+
Sbjct: 195 RRTQVAAW 202


>gi|227538925|ref|ZP_03968974.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300770449|ref|ZP_07080328.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
 gi|227241128|gb|EEI91143.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300762925|gb|EFK59742.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 211

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 1/100 (1%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEI 206
             + +  L + L      ++    +     +H   +  +LT RE E L  I+ GKT+  I
Sbjct: 112 LHELKNALNEALSGKVTFSSDVKEIIARPHLHDLIELPKLTKREKEILQHIALGKTTTTI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +S  T+  +   +M K   K  +  I  A+ +N++
Sbjct: 172 ADELFLSPLTIETHRKRMMSKFKAKNMAALIKTAMEHNLI 211


>gi|116251612|ref|YP_767450.1| two component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256260|emb|CAK07341.1| putative two component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 219

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 40/115 (34%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
             LT    +        F    I     L  +                  G    LT RE
Sbjct: 99  IVLTGHGGQAMTVNATKFHVSFIPQPFDLNALAEKIHAAIRTTMEIGRLEGNYRTLTPRE 158

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E + +++EG  + ++A  L IS  TV  +   +MRK   +T    +  A + +I
Sbjct: 159 REVMKFVAEGLLNKQVAFKLNISEITVKAHRGQVMRKMNARTLPHLVNMAAKLDI 213


>gi|91787064|ref|YP_548016.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696289|gb|ABE43118.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 213

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
               +   L   +   L   +       + Y +     A++   +  +   G  I  +  
Sbjct: 71  AEKPKLRILVLSMHQELQYAVRAIKSGASGYLTKESAPAQLEEAIRKIAAGGAFISAEVA 130

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            ++  L A   +    +D        L+ RE E    + +G T  +IA  L +S  TV+ 
Sbjct: 131 EQLA-LGAMPGSEAPRHDC-------LSNREFEVFRLVVDGMTLTDIAAQLHLSVKTVST 182

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245
           +  ++M K     +S  I YA+++ +
Sbjct: 183 HKVNLMHKMGLHNQSELIRYALKHGL 208


>gi|26987312|ref|NP_742737.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           KT2440]
 gi|24981960|gb|AAN66201.1|AE016248_4 DNA-binding response regulator, LuxR family [Pseudomonas putida
           KT2440]
          Length = 258

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 10/173 (5%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           + L  I  S   F+ +     +EK      +    E F   +    +     AG+  +  
Sbjct: 72  RALKEINGSQRTFEAIMLTGRAEKQDLIRAI---REGFADYYQKPMDLDELLAGVRRQEA 128

Query: 132 SLTFDVARIR-IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------DF 184
           +L      +R +G +    +      D L++    A  Q    ++ D    +        
Sbjct: 129 ALLERQRNLRDLGGLNQRLQELAESVDELYQDLEKARGQGTHRRASDAEESESELPAAFE 188

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +L+ R++E    + +GKT+ +IA  LGI+ NTV  Y++ ++R T    R+   
Sbjct: 189 KLSPRQLEVARLVGKGKTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLA 241


>gi|51594665|ref|YP_068856.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|186893668|ref|YP_001870780.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587947|emb|CAH19550.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|186696694|gb|ACC87323.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 210

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A   + + K           LT RE + L  I+EG  +  IA  L IS+ TV  +  ++M
Sbjct: 129 ALDASMVIKLTQGPANTPTVLTPRERQILKLITEGSCNRVIAAQLSISQKTVETHRLNMM 188

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           +K      +  I ++ R  +
Sbjct: 189 KKLDVHKVAELIHWSYRLGL 208


>gi|148252132|ref|YP_001236717.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146404305|gb|ABQ32811.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 211

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 13/132 (9%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAY 168
            P+F    +   P A    +Y +L F     R   ++           RL E IG  A  
Sbjct: 81  APIFMISGQGDIPMAVNAIKYGALDFIEKPFRGSEIV----------ARLNEAIGAFARR 130

Query: 169 QAN--MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           Q      K   +H+     LT RE E L   + G ++ E    LGIS  T+ ++ A+IM+
Sbjct: 131 QKENASPKIGSLHFPGREPLTRREREVLEQFTAGASNKEAGRTLGISPRTIEDHRANIMK 190

Query: 227 KTATKTRSGAIA 238
           K   +  +  I 
Sbjct: 191 KLGARNAADLIR 202


>gi|332991563|gb|AEF01618.1| putative regulator in two-component regulatory system [Alteromonas
           sp. SN2]
          Length = 217

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 40/94 (42%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           + IL   +W    L+     + + +         LT  + + L ++ +G  + +I   L 
Sbjct: 116 QAILDGDVWLPPNLSDSVDEIDEEFSELADNVASLTPSQYKVLCFMRDGLLNKQIGYNLD 175

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+  TV  ++ +I +K     R+ A+  A +  +
Sbjct: 176 IAEATVKAHVTAIFKKLGINNRTQAVLIASQLEL 209


>gi|289577632|ref|YP_003476259.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus
           Ab9]
 gi|297543934|ref|YP_003676236.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289527345|gb|ADD01697.1| transcriptional regulator, LuxR family [Thermoanaerobacter italicus
           Ab9]
 gi|296841709|gb|ADH60225.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 260

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 14/146 (9%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           RP E +C +F       +P    D              +G + +    + I  +      
Sbjct: 123 RPQEHYCDIFKKWHCIASPIIVEDGEI-----------MGYIDISTIDKKIADEVSMVKK 171

Query: 164 LLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           LLA   A+ ++        +    +L   +++ L   ++G    +IA  LGI   TV  +
Sbjct: 172 LLAEKIASEYEKIVKEKELNEIKIKLNDNQIKILALEAKGYRELDIAEALGIGVVTVKYH 231

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
              I+ K   K    A+A A++  ++
Sbjct: 232 KRKIVEKLGVKNIKEAVAKAIKLGLI 257


>gi|229491998|ref|ZP_04385815.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229321130|gb|EEN86934.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 225

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 11/129 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           VF  L    +           LT  +  +  G  +L P+   +         L+  +   
Sbjct: 103 VFAALRAGASGFLLKTATADELTSAIRNVAAGDAVLAPRAARV---------LIGEFVQR 153

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K  +       ELT RE E L  +  G ++ E++  LG+   TV ++++ ++ K    
Sbjct: 154 APKPTEPLGLS--ELTDREREVLALLGTGMSNAELSRELGVGAPTVKSHVSRVLSKLHLT 211

Query: 232 TRSGAIAYA 240
           +R  A   A
Sbjct: 212 SRVQAAILA 220


>gi|303238517|ref|ZP_07325051.1| transcriptional regulator, LuxR family [Acetivibrio cellulolyticus
           CD2]
 gi|302593915|gb|EFL63629.1| transcriptional regulator, LuxR family [Acetivibrio cellulolyticus
           CD2]
          Length = 274

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 9/149 (6%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD- 157
             +++RP  ++ P FH   +  +        YC      ++I   + ++     I     
Sbjct: 120 AKLIKRPVYIY-PAFHYSNKLKSLY-----EYCIPVIHKSKIYCYISVISLSNPISNALV 173

Query: 158 RLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            L E+  +  Y  +   SY          +LT +++  ++ I++G + ++IA  L +S  
Sbjct: 174 GLLELLAINIYSESSQISYSDCEELNLSHKLTEKQIAIISMIAQGFSDEQIAQELSLSLA 233

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T+  +   I +K    +R  A+  A+  N
Sbjct: 234 TIKYHNQLIFKKLNANSRVDAVVKALMLN 262


>gi|300933646|ref|ZP_07148902.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Corynebacterium resistens DSM
           45100]
          Length = 201

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L + +  +   A    +   + +  +     LT REV+    +  GK+S  IA  L +S 
Sbjct: 111 LAESVRRVHAGARVVDSAL-ATEALYSPPSPLTPREVDVCREVLTGKSSANIAKALHLSE 169

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            TV N+++S + KT    R  A   A    
Sbjct: 170 GTVRNHVSSAITKTQASNRYDAARIARDRG 199


>gi|294626355|ref|ZP_06704957.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599356|gb|EFF43491.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 236

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    + +++D+ +    ++       +           LT RE E +   SEG ++ +I
Sbjct: 112 LLRAIQCVIQDQTYISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S  TV  +  + M K   ++ +    YA+   +
Sbjct: 172 ANRLHLSVKTVGTHRENCMLKLNIQSIAQLTRYAIAQGL 210


>gi|150376946|ref|YP_001313542.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150031493|gb|ABR63609.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 248

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             L    +A +  S D        LT RE++ L  +S G  +  IA  + +S NTV  ++
Sbjct: 166 PPLENGARATLVASADPRMA---GLTARELQILEMVSRGLQNKIIAAEIRLSENTVKIHL 222

Query: 222 ASIMRKTATKTRSGAIAY 239
            +I+ K     R+ A A 
Sbjct: 223 HNIITKLGAHNRTEAAAR 240


>gi|86739638|ref|YP_480038.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86566500|gb|ABD10309.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 297

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 163 GLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            +L  +  N+ +     D       +L+ RE + +  ++EG+++ ++A  L IS +TV +
Sbjct: 202 AVLGRHLGNLLRFYIRADPGPSVAGKLSARERDVVRLVAEGRSNRQVAEALCISIDTVKH 261

Query: 220 YIASIMRKTATKTRSGAIA 238
           ++   +  T    R+    
Sbjct: 262 HLTHALVATGCTNRTQLAI 280


>gi|332306859|ref|YP_004434710.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174188|gb|AEE23442.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 214

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 19/206 (9%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE---KDKYYNVLQR 104
            +  + E V    F++V      E+ +      + P  ++  M++      +    +L+ 
Sbjct: 16  GIRRILEDV--QGFVVVGEATTGEEAVKFC-RKNAPDLVLMDMSMPGIGGLEATKQILRF 72

Query: 105 PTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
                  V     EN  P   M      Y +   D   + + +  +    + +  D    
Sbjct: 73  SENTRVIVLSVHKENPIPAKVMRMGAFGYLTKDSDPNEMEMAIRKVAAGQKYVSPD---- 128

Query: 162 IGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
                  Q     + D   G  FE L+ RE+E    +++G    +IA  L IS  TVN +
Sbjct: 129 -----IAQQIAIGALDFTDGNPFECLSERELEITLMLTKGSKVPDIAKFLNISAKTVNTH 183

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
              +  K    T       A+R+ ++
Sbjct: 184 RYRMFEKLNVSTDVELTHLALRHKLI 209


>gi|269216590|ref|ZP_06160444.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC
           700122]
 gi|269130119|gb|EEZ61201.1| DNA-binding response regulator, LuxR family [Slackia exigua ATCC
           700122]
          Length = 598

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 43/129 (33%), Gaps = 19/129 (14%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           E I    G+ N       +                 I R+R     +  A +   F    
Sbjct: 485 EGIDLEGGISNAALGEACERG--------ASEAPADIERERERHAVVNFADRLEAF---- 532

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               K++ L+ RE E L     G + D I   L ISR TV  ++  +  K     +   I
Sbjct: 533 ---CKEYGLSAREQEVLVEAVHGYSMDGIGRKLFISRETVKTHLRHVYLKAGVANKQQLI 589

Query: 238 ----AYAVR 242
                YAVR
Sbjct: 590 EFIDRYAVR 598


>gi|242280104|ref|YP_002992233.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242122998|gb|ACS80694.1| transcriptional regulator, LuxR family [Desulfovibrio salexigens
           DSM 2638]
          Length = 406

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE +    + +GK   E+A  L I+ NT + Y + IM+K    + +  I YA+R
Sbjct: 343 PTHLSPREYQVFLLLIQGKRIKEVANELDITGNTASTYRSRIMKKLNISSITELIQYAMR 402

Query: 243 NNIV 246
             ++
Sbjct: 403 QGLI 406


>gi|49079156|gb|AAT49860.1| PA2376 [synthetic construct]
          Length = 214

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 21/216 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +P+   L AR+I  D    +   +  +         +       +  +L S VS + P  
Sbjct: 1   MPSTRSLPARVIVADDYPLFRDGLRRVVRRYLPQAAVSEAGSFDEVLRLASSVSPEPPAL 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-------NRYCSLTFDVA 138
            V  + L         ++R    +      +   +  P  +D       + Y   + +  
Sbjct: 61  FVLDLLLPG-FAASQSIERLRRAYRHSAIVIVSMLDDPRLVDEVLAAGADGYLGKSLEAG 119

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   L  L     ++   RL       + Q  +  +          LT R+   L  I+
Sbjct: 120 EIGTALQTLGSGEPVV---RLRGGSSAGSRQRALLDA----------LTPRQQAVLRLIA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +G ++ EI   L IS   V  +++S++R     TR+
Sbjct: 167 DGLSNKEIGRALSISPFIVRVHVSSLLRALEVNTRT 202


>gi|291528659|emb|CBK94245.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale M104/1]
          Length = 218

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           K ++++G+E+  +  ++EG  + EIA  L +S  TV NYI+ I+ K   + R+    +
Sbjct: 155 KSYDISGKELSIIELVAEGLNNREIADELYLSEGTVRNYISVILEKLQLRDRTQLACF 212


>gi|134101976|ref|YP_001107637.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291008994|ref|ZP_06566967.1| LuxR family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133914599|emb|CAM04712.1| transcriptional regulator, LuxR family [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 943

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E++    +S+G ++ +IA  L  S+ TV  +++ I+ K   ++R      A R+
Sbjct: 868 LTPAELQVAWLVSDGHSNADIAARLFSSKRTVEAHVSRILAKLGVRSRVEIAIEATRH 925


>gi|325271782|ref|ZP_08138255.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|324103086|gb|EGC00460.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 221

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 156 LTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|332829196|gb|EGK01860.1| hypothetical protein HMPREF9455_02008 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 292

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL--LAAYQANMFKSYDVHWGKDF 184
           +N   +  F +   +  L         IL+  + ++    +   Q  +  S+ +   K  
Sbjct: 164 ENMCYATIFTIDSFQRDLEKHNRIREKILKPMIADLSESGVEDLQELISVSHAIKATKAQ 223

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE++ L  ++ G  + E+A  L IS NTV ++  +I  K   KT SG I Y + N 
Sbjct: 224 ALSQRELDVLRLVALGLLNKEVADKLNISLNTVLSHRKNITAKLGIKTVSGLIFYCMTNG 283

Query: 245 IV 246
            +
Sbjct: 284 YI 285


>gi|332296369|ref|YP_004438292.1| transcriptional regulator, LuxR family [Thermodesulfobium narugense
           DSM 14796]
 gi|332179472|gb|AEE15161.1| transcriptional regulator, LuxR family [Thermodesulfobium narugense
           DSM 14796]
          Length = 459

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           F LT RE E + +I  G+    IA I+ IS NT   ++ +I RK     R   I
Sbjct: 400 FGLTPREKEIVKYILMGRNGRYIAEIMHISENTFKTHMRNIFRKCNVSNRQELI 453


>gi|315649953|ref|ZP_07903033.1| transcriptional regulator [Eubacterium saburreum DSM 3986]
 gi|315487723|gb|EFU78026.1| transcriptional regulator [Eubacterium saburreum DSM 3986]
          Length = 222

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +   AN+  + D     D  LT RE+E    + EG ++ ++A IL IS  TV  +I++I 
Sbjct: 129 SDLMANVGNTSDEEKKIDT-LTRRELEVALLLREGYSNAKLANILSISEGTVKKHISNIF 187

Query: 226 RKTATKTRSG 235
            K    TR+ 
Sbjct: 188 SKLEIYTRTE 197


>gi|254428002|ref|ZP_05041709.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
 gi|196194171|gb|EDX89130.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
          Length = 216

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 14/162 (8%)

Query: 83  PFD-LVRCMALSEKDKYYNVL---QRPTELFCPVFHTLPENITPPAGM---DNRYCSLTF 135
           PFD ++  + +     +  ++   ++  ++   V     +       +    + +   + 
Sbjct: 48  PFDVILLDLHMPGTHGFSGLVYLREQYRKVPVVVISATEDVDVIQRAIHFGADGFIPKSA 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            V  +   +  +    R +       +             +     +   LT ++   + 
Sbjct: 108 SVDTMTDAMRKIMDGERWLPEKARRAMP-------PTLPDHSAMSERITSLTPQQFRVMG 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            + EG  +  IA  L +S  TV  ++ +I RK   + R+ A+
Sbjct: 161 MLMEGMQNKVIAYELDVSEATVKAHMTAIFRKLGVRNRTQAV 202


>gi|241203034|ref|YP_002974130.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856924|gb|ACS54591.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 245

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + T RE + L  +  G ++  IA  L +S +TV  ++  IMRK   + R+  +A  ++ 
Sbjct: 177 DFTPREADVLAELQCGCSNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVARLIQR 235


>gi|21242362|ref|NP_641944.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107798|gb|AAM36480.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 237

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    + +++D+ +    ++       +           LT RE E +   SEG ++ +I
Sbjct: 113 LLRAIQCVIQDQTYISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S  TV  +  + M K   ++ +    YA+   +
Sbjct: 173 ANRLHLSVKTVGTHRENCMLKLNIQSIAQLTRYAIAQGL 211


>gi|17232470|ref|NP_489018.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|17134116|dbj|BAB76677.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 224

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 74/206 (35%), Gaps = 17/206 (8%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE--KDKYYNVLQRPT 106
           M  + EY G  H+ +    L   +      +   P   +    +     +++    ++  
Sbjct: 26  MDKIGEYFGVQHWGIY---LIDSESKADTETQSIPAVCLESNPVGRYVVERHAPAHEQLI 82

Query: 107 EL------FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
                   FCP  H     +T P   D R    T + AR +            +    + 
Sbjct: 83  LTPEDWKDFCPR-HDHGHVMTGPIICDGRLIG-TLNFARDKGKPAFTANDLADLSALCIH 140

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
               LA  + N              LT RE++    +++G T+ EIA  L I++N+V   
Sbjct: 141 LSAKLATLKTN---PNIFKSSSPSPLTPRELQIAELVAQGLTNAEIAEKLWITQNSVKQA 197

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +  + RK     R+  +A  +++ ++
Sbjct: 198 LKRMFRKLGVSARAEMVAR-LQDQLI 222


>gi|297580291|ref|ZP_06942218.1| transcriptional regulator UhpA [Vibrio cholerae RC385]
 gi|297535937|gb|EFH74771.1| transcriptional regulator UhpA [Vibrio cholerae RC385]
          Length = 208

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               L Q +   +I+    P +    ++L E+ + +N   R   +   ++ +        
Sbjct: 39  AFHALTQSEVDVAIIDISMPDE--NGLSLLERLRQHNP--RFKAIILSIYDSASFVKKAL 94

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y S     + +   +  +    R +  D L  +            S        
Sbjct: 95  DAGAQGYLSKRCGPSELVSAIRTVASGRRYLCADALVNL------------SNPDINNVL 142

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT REVE    + +GK   EIA  L +S  TV+ + A+I+ K         I +A+++
Sbjct: 143 ADLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQH 202

Query: 244 NIV 246
           +++
Sbjct: 203 HLL 205


>gi|324997988|ref|ZP_08119100.1| two component LuxR family transcriptional regulator [Pseudonocardia
           sp. P1]
          Length = 215

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 11/202 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R++  + ++     +  L E  GA+    V   +     L   V+   P   V  + 
Sbjct: 1   MTMRVVLAEDSMLLREGLVRLLEEAGAT----VLAAVGDGTTLVEAVAEHGPEVAVVDVR 56

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           +        +            H     +     ++  Y +   +       L+      
Sbjct: 57  MPPSFTDEGLRAALEIRRQ---HPAVGILVLSQYVEESYATDLLEAGGGVGYLLKDRVSK 113

Query: 152 RIILRDRLWEIG----LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              L D L  +     +L     +   +         EL+ RE E L  +++G+T+  I 
Sbjct: 114 LADLADALSRVAAGGTVLDPEVVSALLTKRRRRDPLEELSPREREVLELMAQGRTNTAIG 173

Query: 208 VILGISRNTVNNYIASIMRKTA 229
            I+ I++  V  +I+SI  K  
Sbjct: 174 RIMVITQGAVEKHISSIFTKLG 195


>gi|317490065|ref|ZP_07948554.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325829824|ref|ZP_08163282.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
 gi|316910770|gb|EFV32390.1| luxR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|325487991|gb|EGC90428.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1]
          Length = 322

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             +     LT RE + L  + EGK +  IA  L +S  TV  ++ +I RK    +R   
Sbjct: 256 ARYADRHALTPRERDVLALLLEGKDNQNIASALTLSLGTVKAHVHNIYRKANVSSRQQL 314


>gi|307826600|ref|ZP_07656720.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
 gi|307732395|gb|EFO03310.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
          Length = 171

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  I+ G  + EIA  L IS  TV  + A++MRK      +  ++ A +  
Sbjct: 26  NLTSREAQLLKLIAAGYKNKEIADSLCISLKTVETHRATLMRKFNAHNVATLLSVANQAG 85

Query: 245 I 245
           +
Sbjct: 86  V 86


>gi|261736132|ref|YP_003257474.1| two component transcriptional regulator [Streptomyces sp. ZL12]
 gi|261349255|gb|ACX71187.1| two component transcriptional regulator [Streptomyces sp. ZL12]
          Length = 116

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE++ L   + G T+  IA  LGI    V + + S  RK     R+ A+A A+R  +
Sbjct: 37  ITARELDVLRHAANGATNQSIAHHLGIGTEAVASRMQSAFRKLRVGDRAQAVAVALRLGL 96

Query: 246 V 246
           +
Sbjct: 97  L 97


>gi|291614056|ref|YP_003524213.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584168|gb|ADE11826.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 208

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 9/159 (5%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLL 147
            ++  E  +          +     H  P+            YC+   D   +   +  +
Sbjct: 58  GISGVELIERIRAQDPQLPILVLSMHNEPQIARRALIAGAAGYCTKDSDPEVLIEAIRKV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              GR I    L E       Q   +   +V       L+ RE   L  + +GK+ +E+A
Sbjct: 118 ASGGRFIAPS-LAEKMAFDTGQHAQYLPREV-------LSEREYTILHLLVQGKSVNEVA 169

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  TV+ + A +M+K   +  +  I Y V + +V
Sbjct: 170 AELVISNKTVSTHKARLMQKLNLQNNAELIRYGVEHGLV 208


>gi|237722483|ref|ZP_04552964.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|229448293|gb|EEO54084.1| transcriptional regulator [Bacteroides sp. 2_2_4]
          Length = 216

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDV------- 178
           R+   + +++   I  M +     +IL++   E     L+       F  + +       
Sbjct: 80  RWILFSNELSEDFIRRMSIERNIGMILKENSGEEIHSALMCTAHGERFLCHQITNLLIIG 139

Query: 179 --HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT  E++ L  I+ GK+  EIA+    S +T+  +  +I RK        A
Sbjct: 140 SDKPEIHSVLTVTEIDILKLIAHGKSVKEIALERTSSIHTIITHKKNIFRKLGVNNVYEA 199

Query: 237 IAYAVRNNIV 246
             Y +R  ++
Sbjct: 200 TKYTLRAGLI 209


>gi|258653176|ref|YP_003202332.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556401|gb|ACV79343.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 204

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LTGRE + L   ++G T  +IA  L +S  TV N+++S++ KT   TR+ A+  A  
Sbjct: 141 ESPLTGRERDVLLATADGGTVSQIAGRLFLSEGTVRNHLSSVIGKTGAATRADALRIATD 200

Query: 243 NNIV 246
              +
Sbjct: 201 RGWI 204


>gi|257790178|ref|YP_003180784.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257474075|gb|ACV54395.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 486

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              FELT RE E L +++ G+++  IA  L IS NTV  +I  +  KT   ++   ++  
Sbjct: 417 AARFELTPREREILGYLARGRSARFIAETLIISENTVWAHIKRVYAKTGVHSKQELMSVV 476

Query: 241 VRNN 244
            R  
Sbjct: 477 ERQG 480


>gi|110833650|ref|YP_692509.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis
           SK2]
 gi|110646761|emb|CAL16237.1| DNA-binding response regulator, LuxR family [Alcanivorax
           borkumensis SK2]
          Length = 224

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 16/193 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G S   +   DLF +Q  D +V       L+  +  S  +     L    +   P+   +
Sbjct: 39  GVSCTAISSEDLFCDQIQDDLV-------LINVLDFSTPE--IEGLLGRIQEHMPLCRVI 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGL----MLLFPKGRIILRDRLWEIGLLAAYQANM 172
             N       DN +  L + V +  I       L+      + + R W       Y    
Sbjct: 90  LVNADRD---DNIFFLLNWPVVKGVIYQQDSDALISKALDEVCKGRSWFPRSYMDYLVRH 146

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            K+          LT RE + L  +  G ++ EIA  + +S +TV  ++ S+ RK   K+
Sbjct: 147 RKTPTRCGHIFESLTSRERQMLDHVVRGMSNHEIADAICLSTHTVKAHLQSLYRKVGVKS 206

Query: 233 RSGAIAYAVRNNI 245
           R G + +   N++
Sbjct: 207 RVGVMRWVHENHL 219


>gi|329113956|ref|ZP_08242723.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
 gi|326696703|gb|EGE48377.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
          Length = 295

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +    +   ++ RE E L WIS GKTS +IA IL +S  T++ +I  I  KT 
Sbjct: 224 PEKTLQEALNISAREAEVLLWISRGKTSRDIADILLVSPRTIDKHIEQIYNKTG 277


>gi|257063869|ref|YP_003143541.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791522|gb|ACV22192.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 515

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK + LT RE E     ++G +S  IA  L +S +TV  +  ++ RK    +R+  I  A
Sbjct: 452 GKQYGLTAREKEIAALTAQGFSSTYIAEKLVVSASTVRFHQQNVYRKLDIHSRTELIEIA 511


>gi|56413638|ref|YP_150713.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179982|ref|YP_216399.1| secretion system transcriptonal activator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|168233585|ref|ZP_02658643.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC
           191]
 gi|168822260|ref|ZP_02834260.1| EsrB [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194469524|ref|ZP_03075508.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|197248947|ref|YP_002146649.1| EsrB [Salmonella enterica subsp. enterica serovar Agona str. SL483]
 gi|197362562|ref|YP_002142199.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|224584098|ref|YP_002637896.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|56127895|gb|AAV77401.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62127615|gb|AAX65318.1| Secretion system regulator: transcriptonal activator, homologous
           with degU/uvrY/bvgA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194455888|gb|EDX44727.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|197094039|emb|CAR59535.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197212650|gb|ACH50047.1| EsrB [Salmonella enterica subsp. enterica serovar Agona str. SL483]
 gi|205332349|gb|EDZ19113.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC
           191]
 gi|205341360|gb|EDZ28124.1| EsrB [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|224468625|gb|ACN46455.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|320086128|emb|CBY95902.1| Oxygen regulatory protein nreC Nitrogen regulation protein C
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|322714449|gb|EFZ06020.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 212

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L     ++ +  +      +  +   L    +LA  +A+              LT RE +
Sbjct: 105 LKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELKADTTN--------HQLLTLRERQ 156

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I EG T+  I+  L IS  TV  +  ++MRK      +  +  A R  ++
Sbjct: 157 VLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLI 210


>gi|326385636|ref|ZP_08207270.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209970|gb|EGD60753.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 213

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-GMDNRYCSLTFDVARIRIGLMLLF 148
           +   E  +Y         +        P+++        + Y +   +V+ +   + ++ 
Sbjct: 60  LTAPESLRYLRQRHGGLPVLILSASGEPDDVIGTLRAGASGYITKASEVSELLAAVKVIL 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIA 207
             G + L D     G++AA    +  +           LT R+ E LT   +G  +  IA
Sbjct: 120 -DGGVFLPD-----GIIAARCDPIGPARPAEPSPSVPRLTRRQYEVLTLTLQGHANKVIA 173

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGA 236
             L +S  TV  +++++MR      R   
Sbjct: 174 HNLSMSEGTVKTHLSAVMRLYGVNNRVQL 202


>gi|218780409|ref|YP_002431727.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761793|gb|ACL04259.1| two component transcriptional regulator, LuxR family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 212

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D  V     +  + E       ++V     +E     +     P   V  +++
Sbjct: 1   MIRVLLADDHVIVRAGLRRIIEDSE-DIKVIVEASNGKEAID--LTLEHCPDVAVVDISM 57

Query: 93  SEKDKYYNVLQRP------TELFCPVFHTLPENITP-PAGMDNRYCSLTFDVARIRIGLM 145
              D    V+ R         +     H   + +          Y +      ++   + 
Sbjct: 58  PGIDG-LEVVSRLHAELPDLPMLILTMHEEEQYVVRAIEAGAMGYMTKKSAPEQLVTAIR 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            L    R +      E   L A + + +            L+ RE++ L  ++ G T+ E
Sbjct: 117 KLHSGSRFLT----EEAAELLALRVSRWSKGGSLLD---SLSKRELQVLRHLASGHTNRE 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA    IS  TV+ Y A +++K   +  +    +A++NN++
Sbjct: 170 IADSYHISVKTVDTYRARLLKKLNLRNNADISRFAIQNNLI 210


>gi|113868997|ref|YP_727486.1| response regulator [Ralstonia eutropha H16]
 gi|113527773|emb|CAJ94118.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 219

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 8/147 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                  +  V+     +F      +    TP      R  S    V +           
Sbjct: 67  GFDAMQSFKTVIPGARFIF------MSAEATPEIVGRARALSACGFVGKHLDANAFTAAV 120

Query: 151 GRIILRDRLW--EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +++  D  +  +  L    Q+            +  LT R+   L  + EG  +  IA 
Sbjct: 121 RKVLAGDTSFPTDEALNGRAQSFGPAHGIPVTPAELGLTPRQGSVLALVLEGLPNKVIAR 180

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSG 235
            LG++ NTV  ++++I+++   +TR  
Sbjct: 181 RLGLTENTVKEHVSAILQRLGVRTRMQ 207


>gi|111019707|ref|YP_702679.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus
            jostii RHA1]
 gi|110819237|gb|ABG94521.1| protein kinase/ transcriptional regulator, LuxR family protein
            [Rhodococcus jostii RHA1]
          Length = 1105

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 18/154 (11%)

Query: 90   MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            M  ++                 V H   E +T  A  +       F+ AR    L+    
Sbjct: 964  MGAADALGRALGSSSVLFPTLLVRHEDCERLTRTALGER-----AFEAARREGALLGFEG 1018

Query: 150  KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                 L +R                + +        LT RE E    +++G T+  +A  
Sbjct: 1019 AVAYALGER-------------TEATTEPAGSSATGLTKREREVADLVAQGLTNKAVAAK 1065

Query: 210  LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L IS  T   ++  I+ K    +R+    + V +
Sbjct: 1066 LVISPRTAQGHVEHILTKLGFTSRTQIAGWVVEH 1099


>gi|56696847|ref|YP_167209.1| ATP-dependent transcription regulator LuxR [Ruegeria pomeroyi
           DSS-3]
 gi|56678584|gb|AAV95250.1| autoinducer-binding transcriptional regulator, LuxR family
           [Ruegeria pomeroyi DSS-3]
          Length = 249

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 157 DRLWEIG----LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           D LW       LL    A++      +   +  LT R+ E L W+ +GKT+ +IA+++G+
Sbjct: 151 DALWRTHGQDILLMNNVAHLKIMTLPYVAPNRSLTRRQREALQWVGDGKTTQDIAILMGL 210

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +  TV  ++       + +T + A+  A  +N
Sbjct: 211 TAATVEKHLRLAREALSVETTAQAVLKAALHN 242


>gi|325928170|ref|ZP_08189379.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325541466|gb|EGD12999.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 236

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    + +++D+ +    ++       +           LT RE E +   SEG ++ +I
Sbjct: 112 LLRAIQCVIQDQTYISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S  TV  +  + M K   ++ +    YA+   +
Sbjct: 172 ANRLHLSVKTVGTHRENCMLKLNIQSIAQLTRYAIAQGL 210


>gi|253996775|ref|YP_003048839.1| two component LuxR family transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983454|gb|ACT48312.1| two component transcriptional regulator, LuxR family [Methylotenera
           mobilis JLW8]
          Length = 205

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 89  CMALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              + E D      +    ++  P+         P +    +  ++ F    +R      
Sbjct: 56  DYRMPEMDGLELQAELAKRDINLPIIFLTGHGNIPTSVKAMKAGAIDFLTKPVR------ 109

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTS 203
                   R++L  + + A  ++    + +  + +  +    LT RE + +    +G  +
Sbjct: 110 --------REKLISVVMAAMIESEKTHAENASYKEAVKCIASLTEREYDVMLLAIQGHHN 161

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  LGIS  TV  + ++IM KT           A ++ +
Sbjct: 162 KDIARQLGISHRTVEIHKSNIMHKTGANHVLDLARIAHKSGL 203


>gi|167572664|ref|ZP_02365538.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 267

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           D  LT RE +    + +G+++ EIA  L + + TV  ++  + RK     R+  +
Sbjct: 208 DARLTHREEQIARLVRDGRSNKEIARDLSLGQPTVKTHLLRMFRKLGVSNRTELV 262


>gi|325922619|ref|ZP_08184370.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546914|gb|EGD18017.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 222

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +LT ++   L  +  G+ + +IA   G+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 149 DLTPQQFRVLQMLGAGRLNKQIAYDFGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|261345362|ref|ZP_05973006.1| DNA-binding response regulator UhpA [Providencia rustigianii DSM
           4541]
 gi|282566405|gb|EFB71940.1| DNA-binding response regulator UhpA [Providencia rustigianii DSM
           4541]
          Length = 208

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 4/168 (2%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           WP  +   + ++  D      +   +L   +    P+  T    + +    +   +    
Sbjct: 40  WPHLISLDIDVAIMD-ISMPDESGLQLLTRLRKKKPDFRTIILSIYDTPAFVQSALDAGA 98

Query: 142 IGLMLLFPKGRIILRD-RLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
              +        +++  R    G   L A      +          ELT RE E    + 
Sbjct: 99  SAYLTKCCGPEELVQAVRSVHQGGCYLCADAMRALRQTPQQQHGIQELTNREREVFDLLV 158

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G +   IA  L +S  TV+ + A+++ K    +    + YA+ +NI+
Sbjct: 159 SGLSVKVIAEQLNLSHKTVHVHRANVLGKLQCDSTIELVHYALEHNII 206


>gi|220911420|ref|YP_002486729.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219858298|gb|ACL38640.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 208

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +      +  LT RE E L+ +++G ++ E+   L IS  TV  ++A I  K   +
Sbjct: 135 RLFQQLRNPEEVLTPREAELLSLLTQGLSNRELGQRLFISEATVKTHLAHIYSKLGVE 192


>gi|170782304|ref|YP_001710637.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156873|emb|CAQ02041.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 222

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   +T RE + L  +  G ++ EIA  + +S  TV +++AS+MRK A + R      A 
Sbjct: 157 ETIGITPREGDVLQGVLLGWSNAEIAEEIALSSETVKSHVASLMRKLACRNRVALAVRAY 216

Query: 242 RNN 244
           +  
Sbjct: 217 QMG 219


>gi|71277777|ref|YP_268662.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71143517|gb|AAZ23990.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 219

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE+  L  +++G+ + +IA  L IS  TV ++++SI++K     R   +
Sbjct: 154 LTRRELIVLQHLTKGEANKQIAFNLHISETTVKSHVSSILKKLGASNRVKVV 205


>gi|332667758|ref|YP_004450546.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336572|gb|AEE53673.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 211

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 37/76 (48%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             +++ DV   +   LT RE E L  ++EG T  +IA  L +S  TV  +  ++M+K   
Sbjct: 135 EQYRNIDVATQQVPVLTRRETEILQLLNEGLTGPQIAKQLFLSPLTVETHRKNLMQKFNA 194

Query: 231 KTRSGAIAYAVRNNIV 246
                 +  A +N ++
Sbjct: 195 NNAQMLLKLARQNRLI 210


>gi|255693676|ref|ZP_05417351.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
 gi|260620493|gb|EEX43364.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
          Length = 259

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +  M    + H      L+ RE E L  I +G +S EIA  L IS NTVN +  +I+ K 
Sbjct: 183 EVEMLFLSEEHRNI---LSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKL 239

Query: 229 ATKTRSGAIAYA 240
           +      A   A
Sbjct: 240 SVGNSIEACRAA 251


>gi|220925441|ref|YP_002500743.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219950048|gb|ACL60440.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 287

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S  V   + F  + REV  +  +  G+++ +IA  L I    V  ++ +I+RK   + R+
Sbjct: 166 SDPVLTMQSFRPSPREVMIIACLVRGESNRDIARQLSIPVGRVKGHVKAILRKMRVQNRT 225

Query: 235 GAIAYAVRNNI 245
            A  + +++ +
Sbjct: 226 QAAIWGMKHRL 236


>gi|160885164|ref|ZP_02066167.1| hypothetical protein BACOVA_03162 [Bacteroides ovatus ATCC 8483]
 gi|156109514|gb|EDO11259.1| hypothetical protein BACOVA_03162 [Bacteroides ovatus ATCC 8483]
          Length = 259

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  I +G +S EIA  L IS NTVN +  +I+ K +      A   A
Sbjct: 197 LSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAA 251


>gi|254510855|ref|ZP_05122922.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacteraceae bacterium KLH11]
 gi|221534566|gb|EEE37554.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacteraceae bacterium KLH11]
          Length = 250

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 44/88 (50%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           D+  +  LL    A++      +   +  LT R+ E L W+ +GKT+ +IA+++G++  T
Sbjct: 156 DKHGDDILLMNNVAHLKILTLPYHAPNRALTKRQREALQWVGDGKTTQDIALLMGLTAAT 215

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNN 244
           V  ++       + +T + A+  A   N
Sbjct: 216 VEKHLRLAREALSVETTAQAVLKAALQN 243


>gi|119964358|ref|YP_946356.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119951217|gb|ABM10128.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 227

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 2/139 (1%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L    F T    +       + Y         I   +  +     ++       +  +  
Sbjct: 79  LGLSTFSTDRYVVDLLRAGASGYLVKDTLPKEITAAIHTVMAGESVLSSKVTRHV--VTG 136

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              ++             LT +E+E +  +  G ++ E+A  L ++ +T+     ++M K
Sbjct: 137 LAESVPAEVVPDPKLVDALTKKELEVIQLLGRGMSNREMAAELFVTESTIKARFVNVMEK 196

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R   +  AV   +V
Sbjct: 197 LGVRDRVQILVAAVEGGLV 215


>gi|313682018|ref|YP_004059756.1| transcriptional regulator, luxr family [Sulfuricurvum kujiense DSM
           16994]
 gi|313154878|gb|ADR33556.1| transcriptional regulator, LuxR family [Sulfuricurvum kujiense DSM
           16994]
          Length = 206

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 5/151 (3%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            M   +  ++      P  +  P+  T  E           Y +L      +   L +L 
Sbjct: 54  PMTFRDLGEFLKEYPYPMLVLTPI-PTFEEGYPLLRMGIKGYANLHLGSVNLENALSVLE 112

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G       + ++     YQ    +  D    K   L+ RE E   ++++G ++ +IA 
Sbjct: 113 SGGSWFDPGFMNDLIRRIDYQGAS-QGMDGDLEK---LSEREQEIGRYVAQGLSNYQIAQ 168

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + I+  TV  ++ S  +K     R     +
Sbjct: 169 TIEITERTVKAHLLSCYKKLGLNDRVSLALW 199


>gi|307331258|ref|ZP_07610381.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883070|gb|EFN14133.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 206

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D     D  LT RE E L   ++G +  EIA   G+S+ TV NY+++   K   + R 
Sbjct: 135 AADAISAGDSPLTAREAELLELAADGASIAEIAQRAGLSQGTVRNYLSAAAAKLGAENRH 194

Query: 235 GAIAYAVRNN 244
            A      + 
Sbjct: 195 AAARIGQEHG 204


>gi|294147003|ref|YP_003559669.1| putative response regulator [Sphingobium japonicum UT26S]
 gi|292677420|dbj|BAI98937.1| putative response regulator [Sphingobium japonicum UT26S]
          Length = 258

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G I L + + E     A +  + +  D        LT ++   L  +  G+ + +IA  
Sbjct: 167 SGEIYLPEAMGESVAPTAEEDEIARRIDS-------LTPQQKTVLAHLVRGRLNKQIAHD 219

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LG+S  T+  ++++I++K    +R+ A+  A
Sbjct: 220 LGVSMTTIKAHVSAILQKLGVLSRTQAVIKA 250


>gi|239980315|ref|ZP_04702839.1| LuxR response regulator receiver [Streptomyces albus J1074]
 gi|291452180|ref|ZP_06591570.1| regulator [Streptomyces albus J1074]
 gi|291355129|gb|EFE82031.1| regulator [Streptomyces albus J1074]
          Length = 203

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G D  LT RE E L  +++G    EIA  L +S  TV NY+ +++ K   + R  AI  A
Sbjct: 137 GADSPLTERETEVLRLVAQGWEPSEIAKELHLSAGTVRNYLTTVVSKLNARNRVDAIRIA 196


>gi|238785765|ref|ZP_04629738.1| hypothetical protein yberc0001_7170 [Yersinia bercovieri ATCC
           43970]
 gi|238713348|gb|EEQ05387.1| hypothetical protein yberc0001_7170 [Yersinia bercovieri ATCC
           43970]
          Length = 210

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE + L  I+EG  +  IA  L IS+ TV  +  ++M+K      +  I +
Sbjct: 143 ENNQPILTPRERQILKLITEGACNRIIADRLSISQKTVETHRLNMMKKLDVHKVAELIHW 202

Query: 240 AVRNNI 245
           + R  +
Sbjct: 203 SYRLGL 208


>gi|161506311|ref|YP_001573423.1| hypothetical protein SARI_04507 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867658|gb|ABX24281.1| hypothetical protein SARI_04507 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 257

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E +  + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 192 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 245


>gi|186685344|ref|YP_001868540.1| LuxR family GAF modulated transcriptional regulator [Nostoc
           punctiforme PCC 73102]
 gi|186467796|gb|ACC83597.1| GAF modulated transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 221

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 10/164 (6%)

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTL---PENITPPAGMDNRYCSLTFDVARIRI 142
           L + + ++   ++  V +   E   PV   L   P+         + +  +   +     
Sbjct: 52  LQKAVEIALSPQHNPVARYLLEHHAPVHEGLVVEPKTWRLICPRADHWHVMAGPIVSNGH 111

Query: 143 GLMLLFPKGR----IILRDRLWEIGLLAAYQAN---MFKSYDVHWGKDFELTGREVECLT 195
            + ++    +          L ++  L  + +      KS      +   LT RE++   
Sbjct: 112 LVGVVGFTRQQGMPTFDSQNLIDLSALCLHISTWVARVKSQHPLLLQTERLTPREMQIAQ 171

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +++G+T+ EI+  L I+ N+V   +  + RK    +R+  +A 
Sbjct: 172 LVAQGQTNAEISAELWITENSVKQALKRMFRKLEVSSRTQMVAK 215


>gi|269957612|ref|YP_003327401.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269306293|gb|ACZ31843.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 865

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              D  LT RE+E    ++EG  + +IA  LG++  TV N++  ++RK     R
Sbjct: 803 LAPDVRLTPRELEVGRLVAEGLANPDIAKGLGLTVKTVENHLNRVLRKLGVCHR 856


>gi|88191931|pdb|1ZLJ|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191932|pdb|1ZLJ|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191933|pdb|1ZLJ|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191934|pdb|1ZLJ|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191935|pdb|1ZLJ|E Chain E, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191936|pdb|1ZLJ|F Chain F, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191937|pdb|1ZLJ|G Chain G, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
 gi|88191938|pdb|1ZLJ|H Chain H, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr C-Terminal Domain
          Length = 78

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +E   L  +SEG T+ +IA    ++  TV NY++ ++ K   + R+ A  +A
Sbjct: 11  LTDQERTLLGLLSEGLTNKQIADRXFLAEKTVKNYVSRLLAKLGXERRTQAAVFA 65


>gi|148547394|ref|YP_001267496.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148511452|gb|ABQ78312.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
          Length = 221

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 33/55 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 156 LTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|309792081|ref|ZP_07686555.1| TPR repeat-containing transcriptional regulator LuxR
           [Oscillochloris trichoides DG6]
 gi|308225888|gb|EFO79642.1| TPR repeat-containing transcriptional regulator LuxR
           [Oscillochloris trichoides DG6]
          Length = 845

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  ++ G +  +IA  L +S NTV  +I  +  K     +  AI  A    
Sbjct: 784 PLSEREIEVLRLLAAGYSYTQIAAQLVLSVNTVRYHIKGLYGKLGVNKQVQAIERARALG 843

Query: 245 IV 246
            V
Sbjct: 844 YV 845


>gi|257792525|ref|YP_003183131.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257476422|gb|ACV56742.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 468

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI--AYA 240
           +  +T RE E +  +++GKT   I   L +S +TV  ++ +I RK    ++   I    A
Sbjct: 394 ERAVTQRETEVMLLLAQGKTRRAICEELTVSPDTVKTHVRAIYRKLDVHSQQELIDRIVA 453

Query: 241 VRNNIV 246
            R ++V
Sbjct: 454 EREHLV 459


>gi|220929922|ref|YP_002506831.1| LuxR family transcriptional regulator [Clostridium cellulolyticum
           H10]
 gi|220000250|gb|ACL76851.1| transcriptional regulator, LuxR family [Clostridium cellulolyticum
           H10]
          Length = 180

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 7/162 (4%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            M+ +E+    N +    +   PV+ T P +       +  + S+  +  +  IG + + 
Sbjct: 13  GMSFAERAIGTNAIALSMKTKEPVY-TTPPHHYCDLLREFYFYSVPLETKKREIGYLAIC 71

Query: 149 PKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHW----GKDFELTGREVECLTWISEGKTS 203
                +  + L  I  L AY+  N  KS +++      K+  L  +++E L  +++G   
Sbjct: 72  SLNEPVGFE-LEIIADLTAYKILNELKSNEINSVLPNKKECILNKKQLEILKLVAKGVPD 130

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA+  GI+ NTV  +  SI +K   +  + A+   ++ N+
Sbjct: 131 KTIALEEGITINTVKYHKKSIYKKLEVECSAQAVIKCLKLNL 172


>gi|160895160|ref|ZP_02075933.1| hypothetical protein CLOL250_02720 [Clostridium sp. L2-50]
 gi|156863194|gb|EDO56625.1| hypothetical protein CLOL250_02720 [Clostridium sp. L2-50]
          Length = 260

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           K ++LT RE   L  + +G  + EI   L I+ NT+  +I +I RK   + R  
Sbjct: 198 KTYDLTKREQTILQLLLQGMENTEICDHLSITVNTLKKHILNIYRKLGIRNRVQ 251


>gi|157375088|ref|YP_001473688.1| putative nitrate/nitrite response regulator; NarL [Shewanella
           sediminis HAW-EB3]
 gi|157317462|gb|ABV36560.1| putative nitrate/nitrite response regulator; NarL [Shewanella
           sediminis HAW-EB3]
          Length = 213

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 10/162 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIG 143
           +    LS  D    + +   +    +F            +    + Y     +   +   
Sbjct: 57  LNMKGLSGIDTLIALKRAEVQSKIVIFTVSDSESDVLQAIKFNTDGYLLKDSEPEELIEK 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + L      +I          L    A   +           LT RE++ L  I+ GK++
Sbjct: 117 INLAIQGEFVISNP-------LTQIMARSLRPNSKKVSPLESLTQRELQNLKLIAAGKSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  LGI+  TV  ++ ++++K   K+R  A  +AV + I
Sbjct: 170 KDIANKLGIAETTVKVHVKNLLKKLGLKSRVEAAVWAVEHKI 211


>gi|221066206|ref|ZP_03542311.1| transcriptional regulator, LuxR family [Comamonas testosteroni
           KF-1]
 gi|220711229|gb|EED66597.1| transcriptional regulator, LuxR family [Comamonas testosteroni
           KF-1]
          Length = 212

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 2/131 (1%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +   +L   V    P +      +    C      +   +   +L       +      +
Sbjct: 68  ELLKDLQVLVLSNRPSDEEGRNLLSRGACGYAHAQSSSEVLSRMLQSMAGGNIWLGRSLL 127

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L           +  W +   L+ RE E   + S G ++ EIA  + IS  TV  +++
Sbjct: 128 QRLLRDVDARLPEQESDWAEP--LSAREQEVARYASLGDSNAEIAERMSISERTVRAHLS 185

Query: 223 SIMRKTATKTR 233
           ++  K   + R
Sbjct: 186 AVFEKLQVQDR 196


>gi|78047210|ref|YP_363385.1| two-component LuxR family response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78035640|emb|CAJ23331.1| putative two-component response regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 236

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L    + +++D+ +    ++       +           LT RE E +   SEG ++ +I
Sbjct: 112 LLRAIQCVIQDQTYISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S  TV  +  + M K   ++ +    YA+   +
Sbjct: 172 ANRLHLSVKTVGTHRENCMLKLNIQSIAQLTRYAIAQGL 210


>gi|17548506|ref|NP_521846.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430753|emb|CAD17436.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 299

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 4/142 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGM-DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           P  +         E          + Y + T     +   L L+   G+           
Sbjct: 70  PRHVVVLAAQVTAEEAHAVMACGADAYVAKTQPTGVLLATLQLVLAGGQAYPALMPRAAQ 129

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            +A   A           +   ++ R+ E L  +S G +   +  +LGIS  TV  +  +
Sbjct: 130 DVA---AGPPAMNAAEAAQRLNVSQRQYEVLVLLSRGHSVKGVGRLLGISEATVKTHACT 186

Query: 224 IMRKTATKTRSGAIAYAVRNNI 245
           + R+   + +S A+  A+R  I
Sbjct: 187 LYRRLNVRNKSEAVYAAMRLGI 208


>gi|300696853|ref|YP_003747514.1| LuxR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073577|emb|CBJ53097.1| transcriptional regulator, LuxR family [Ralstonia solanacearum
           CFBP2957]
          Length = 293

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   ++ R+ E L  +S G +   +  +LGIS  TV  +  ++ R+   + +S A+
Sbjct: 140 AEAAQRLNVSQRQYEVLVLLSRGHSVKGVGRLLGISEATVKTHACTLYRRLNVRNKSEAV 199

Query: 238 AYAVRNNI 245
             A+R  I
Sbjct: 200 YAAMRLGI 207


>gi|284041993|ref|YP_003392333.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946214|gb|ADB48958.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 122

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +   LT RE E L WI+ G+   + A ++GIS  TV  ++ ++  K   +T
Sbjct: 41  EGLGLTPREAEALRWIALGRRGPDAARLMGISPRTVEKHLQNVYAKLGVRT 91


>gi|297563466|ref|YP_003682440.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847914|gb|ADH69934.1| transcriptional regulator, LuxR family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 321

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
            I + AA      ++ +    +   L+ RE E    ++ G ++  IA  L +S  TV  +
Sbjct: 237 RIDVAAAGAEGEQEAPEPDRVETPALSEREGEIARLLTTGASNARIARELYLSEATVKGH 296

Query: 221 IASIMRKTATKTRSGAIAYAVR 242
           ++ +MR+     R+     A R
Sbjct: 297 VSRMMRRFDCGNRTQLALMAAR 318


>gi|225407940|ref|ZP_03761129.1| hypothetical protein CLOSTASPAR_05161 [Clostridium asparagiforme
           DSM 15981]
 gi|225042534|gb|EEG52780.1| hypothetical protein CLOSTASPAR_05161 [Clostridium asparagiforme
           DSM 15981]
          Length = 887

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 39/98 (39%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P  R  + + +       +             G+  +L+ ++   LT +++G  + EI+ 
Sbjct: 779 PLTRAYVNEVMLAAHSFGSRHKGYLAEAGRETGRPVKLSKQQTRMLTLLAQGYKNAEISE 838

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G+S  T+ ++ +   +K        A+  A    ++
Sbjct: 839 MTGLSIPTIKSHTSLAYKKLGVNNAMDAVLKAKELGLI 876


>gi|182413369|ref|YP_001818435.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840583|gb|ACB74835.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 229

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           L          +    +L   + ++  G + + PK    + D L              + 
Sbjct: 106 LRAGARGYIMKEAGGEALLAAIRQVLTGEVYVSPKMSARILDSL------------SGRK 153

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                    +LT RE E    I +GK++ +IA  L +S  TV+ +   I  K   K  + 
Sbjct: 154 PRGSQSPIEKLTDREFEVFQLIGQGKSTRDIAKQLHLSSKTVDVHRGHIKEKLELKDTTS 213

Query: 236 AIAYAVR 242
            + +AVR
Sbjct: 214 LVRHAVR 220


>gi|73540995|ref|YP_295515.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72118408|gb|AAZ60671.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 210

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 2/129 (1%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ENI  P      +  +   V+ ++ G +    K       R     +L   + +   + +
Sbjct: 81  ENIDIPIVFITGHGDVPMAVSTMKRGAIDFIEKPFDESELRSLVERMLQKARTDHSAARE 140

Query: 178 VHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
               KD   +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T + 
Sbjct: 141 QRAAKDLLGKLTTREQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVAD 200

Query: 236 AIAYAVRNN 244
            +  A+  N
Sbjct: 201 LLRLALSRN 209


>gi|115523030|ref|YP_779941.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115516977|gb|ABJ04961.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 221

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           R +   ++AA +    +       +  +L+ RE + +  + +GKT+ EIA  + IS  TV
Sbjct: 128 RTFATQVIAALRDTSLRR---RAAEAVKLSIREQQIVRLLLKGKTNKEIAHAISISDKTV 184

Query: 218 NNYIASIMRKTATKTRSGAIAYA 240
            +Y+  +M+K   + R   +  A
Sbjct: 185 KHYMTILMQKLQVRNRLEVVIAA 207


>gi|94311812|ref|YP_585022.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93355664|gb|ABF09753.1| Response regulator VsrC transcription regulator protein NarL-family
           [Cupriavidus metallidurans CH34]
          Length = 219

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 8/147 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                  +  V+     +F      +    TP      R  S    V +           
Sbjct: 67  GFDAMQSFKTVIPGARFIF------MSAEATPEIVGRARALSACGFVGKHLDANAFTAAV 120

Query: 151 GRIILRD-RLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAV 208
            +++  D        L+    +   ++ +     +  LT R+   L  + EG  +  IA 
Sbjct: 121 RKVLAGDTSFPSDEALSGRSQSFGPAHGIPVTPAELGLTPRQGSVLALVLEGLPNKVIAR 180

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSG 235
            LG++ NTV  ++++I+++   +TR  
Sbjct: 181 KLGLTENTVKEHVSAILQRLGVRTRMQ 207


>gi|206563825|ref|YP_002234588.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198039865|emb|CAR55840.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 244

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 4/124 (3%)

Query: 118 ENITPPAGMDNRYCSL----TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           E     AG      SL      D  R   G    F  G I    RL  +   A       
Sbjct: 116 EIWLRDAGRTVGAFSLLRFGMGDANRTGNGTAGRFAPGEIDALARLQPVAEAALSPLLRA 175

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +      G +  LT RE +    + +G ++ EIA  L + + T+  ++  + RK     R
Sbjct: 176 RRGIHRIGCEERLTYREEQIARLVRDGCSNKEIARDLALGQPTIKTHLMRMYRKLGVSNR 235

Query: 234 SGAI 237
           +  +
Sbjct: 236 TELV 239


>gi|189466948|ref|ZP_03015733.1| hypothetical protein BACINT_03330 [Bacteroides intestinalis DSM
           17393]
 gi|189435212|gb|EDV04197.1| hypothetical protein BACINT_03330 [Bacteroides intestinalis DSM
           17393]
          Length = 255

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE+E L  I +G  S EIA  L IS +TV+ +  +++ K   +    AI   
Sbjct: 189 NPRIHLTQRELEILQLIQKGLLSKEIAYNLRISIHTVHIHRQNLLHKLGVQNSIEAINAG 248

Query: 241 VRNNIV 246
           +   ++
Sbjct: 249 LELGVL 254


>gi|297583338|ref|YP_003699118.1| LuxR family transcriptional regulator [Bacillus selenitireducens
           MLS10]
 gi|297141795|gb|ADH98552.1| transcriptional regulator, LuxR family [Bacillus selenitireducens
           MLS10]
          Length = 232

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 91/239 (38%), Gaps = 26/239 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-- 75
           QRT++    P++   + R   L              E    S  +++  +L  E   D  
Sbjct: 2   QRTTYHPTTPSKVLFIDRHEHLSREA------RTRIERTQMSRDIVIDKELPDELSDDTV 55

Query: 76  -SIVSSDWPFD-------LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +V  D+  +       L+  ++          +QRP+    P F+     +     + 
Sbjct: 56  VFLVLGDYSLESLDEADTLIEKISDKGIHVLLLTIQRPSPSLFPYFNKGLSGMLSKRELF 115

Query: 128 NRYCSLTFDVARIRIGLMLLFPKG--RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           + Y  +   + +  + L          ++ R +L         +  +F+S D+    D  
Sbjct: 116 DYYPFVFIGLEKEGVYLEQDLHMDLVEVLYRKKLRH----QPIRRLVFRSDDI----DVH 167

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT  E + L  + +G  + +IA ++ ++ +TV+  I+ +++K     R+ A+   ++  
Sbjct: 168 LTKNEKQVLQLVLDGHNNRKIAELMFLAPSTVSTTISHLLKKLGANDRTDAMVQLIKRG 226


>gi|71908721|ref|YP_286308.1| LuxR response regulator receiver [Dechloromonas aromatica RCB]
 gi|71848342|gb|AAZ47838.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas
           aromatica RCB]
          Length = 202

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            + R     +        +L  R+     L    +   +   V   +  +LT RE E + 
Sbjct: 95  ALQRGACDFIEKPFHNEDLL-SRIQRALELDNQLSARRQRDGVISHRLDQLTQREREVMQ 153

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +  GK + +IA  L IS  TV  + A +M K   +T +  +
Sbjct: 154 LVVAGKLNKQIADELNISMKTVEAHRARVMEKMGVRTLAELV 195


>gi|325001806|ref|ZP_08122918.1| GAF sensor hybrid histidine kinase [Pseudonocardia sp. P1]
          Length = 487

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LLA  Q     +     G    +T RE E    +++G T  +IA  L IS  TV  ++ S
Sbjct: 412 LLADEQLGRLAAPRRTVGLP-GITPREEEVRALVADGLTDRQIARTLAISAKTVEKHVGS 470

Query: 224 IMRKTATKTRSGAIAYA 240
           ++RKT T  R+     A
Sbjct: 471 LLRKTRTSNRTMLARLA 487


>gi|228999272|ref|ZP_04158852.1| Spore germination protein gerE [Bacillus mycoides Rock3-17]
 gi|228760469|gb|EEM09435.1| Spore germination protein gerE [Bacillus mycoides Rock3-17]
          Length = 52

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 1   MVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 48


>gi|284992279|ref|YP_003410833.1| LuxR family transcriptional regulator [Geodermatophilus obscurus
           DSM 43160]
 gi|284065524|gb|ADB76462.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus
           DSM 43160]
          Length = 904

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ELT +E +    + +G ++ ++A  L +S  TV+ ++ ++  K    +R+   A A+
Sbjct: 847 ELTAQERQVAGLVRQGLSNRDVAARLFVSPRTVDFHLRNVFSKLGVASRAELTALAL 903


>gi|109898765|ref|YP_662020.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109701046|gb|ABG40966.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 214

 Score = 72.3 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 19/206 (9%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE---KDKYYNVLQR 104
            +  + E V    F++V      E+ +      + P  ++  M++      +    +L+ 
Sbjct: 16  GIRRILEDV--QGFVVVGEATTGEEAVKFC-RKNAPDLVLMDMSMPGIGGLEATKQILRF 72

Query: 105 PTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
                  V     EN  P   M      Y +   D   + + +  +    + +  D    
Sbjct: 73  SENTRVIVLSVHKENPIPAKVMRMGAFGYLTKDSDPKEMELAIRKVAAGQKYVSPD---- 128

Query: 162 IGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
                  Q     + D   G  FE L+ RE+E    +++G    +IA  L IS  TVN +
Sbjct: 129 -----IAQQIAIGALDFSDGNPFESLSERELEITLMLTKGSKVPDIAKFLNISAKTVNTH 183

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
              +  K    T       A+R+ ++
Sbjct: 184 RYRMFEKLNVSTDVELTHLALRHKLI 209


>gi|269795006|ref|YP_003314461.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097191|gb|ACZ21627.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 233

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  +  G T+ +IA  L +S  T   +++ ++ K    +R  A   A    
Sbjct: 166 LTPRERDVLAALGRGLTNQQIATELFVSAATAKTHVSRVLMKLGVTSRVQAALVARDAG 224


>gi|254496316|ref|ZP_05109202.1| two-component response regulator [Legionella drancourtii LLAP12]
 gi|254354477|gb|EET13126.1| two-component response regulator [Legionella drancourtii LLAP12]
          Length = 212

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 164 LLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           LL   Q +  +  D    +        LT RE + +  ISEGK + EIA  L IS +TV 
Sbjct: 113 LLETVQKHANRIIDTDAIEYINERINSLTERERQIIDLISEGKLNKEIAYELTISISTVE 172

Query: 219 NYIASIMRKTATKTRSGAI 237
            + A+IMRK   K  +  I
Sbjct: 173 AHRANIMRKMQAKNLAHLI 191


>gi|209515178|ref|ZP_03264046.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209504432|gb|EEA04420.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 208

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%)

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A       +         + L+ RE++ L  I  GK+  EI  ++ IS  T + Y + I+
Sbjct: 125 ARAALASVEEDSESRPPHYSLSARELQILQLIVSGKSLTEIGRLIFISVKTASTYRSRIL 184

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K    + +  I YA+RN +
Sbjct: 185 SKLNLTSNAQLIDYAIRNGV 204


>gi|313496948|gb|ADR58314.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           BIRD-1]
          Length = 249

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 67/157 (42%), Gaps = 7/157 (4%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR-IGLML 146
             + L+ + +  ++++   E F   +    +     AG+  +  +L      +R +G + 
Sbjct: 76  EAIMLTGRAEKQDLIRALREGFADYYQKPMDLDELLAGVRRQEEALLERQRNLRDLGGLN 135

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------DFELTGREVECLTWISEG 200
              +      D L++    A  Q    ++ D    +        +L+ R++E    +S+G
Sbjct: 136 QRLQELAESVDELYQDLEKARGQGTHRRASDAEESESELPPAFEKLSPRQLEVARLVSKG 195

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            T+ +IA  LGI+ NTV  Y++ ++R T    R+   
Sbjct: 196 NTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLA 232


>gi|299147852|ref|ZP_07040915.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|298514035|gb|EFI37921.1| transcriptional regulator [Bacteroides sp. 3_1_23]
          Length = 259

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +  M    + H      L+ RE E L  I +G +S EIA  L IS NTVN +  +I+ K 
Sbjct: 183 EVEMLFLSEEHRNI---LSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKL 239

Query: 229 ATKTRSGAIAYA 240
           +      A   A
Sbjct: 240 SVGNSIEACRAA 251


>gi|323529151|ref|YP_004231303.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323386153|gb|ADX58243.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 212

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 13/196 (6%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           ++VR  L Q   ++ +V +D     V      + D     L  P      V   L + + 
Sbjct: 15  MIVRLQLMQLLSVEEVVEADNGQTAVEMARQYKPDLAILDLDIPRISGLDVIPRL-KLVH 73

Query: 122 PPAGMD--NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV- 178
           PP  +   + +   TF    +R G+     K + +         +LA Y           
Sbjct: 74  PPIRVMVLSGHDPATFAPRAMRSGVHGFVGKSQEMKEIMRGVEAVLAGYTVFPVAPNGAS 133

Query: 179 ---------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                      G+   L+ +E+  L  +S+G ++  I   L IS  TV+++   IM K  
Sbjct: 134 IAPGVTPNGDEGRIMLLSDKELVILQMLSKGMSNKAIGDALFISNKTVSSHKTRIMHKLG 193

Query: 230 TKTRSGAIAYAVRNNI 245
            K+    I  A R  I
Sbjct: 194 VKSLVELIDLARRCRI 209


>gi|120436972|ref|YP_862658.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117579122|emb|CAL67591.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 205

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 16/215 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  +   +    +    EY     F +   +  QE  L  +     P  ++  + +
Sbjct: 1   MIRLVIAEDHTALIDGIKVFFEYEEDIEF-VGFANNGQE--LIELTRRKKPNLIITDIRM 57

Query: 93  SEKDK---YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              D       +L+    +    F    ++      ++                ++    
Sbjct: 58  PVMDGIQATKEILEEFPNIKIIAFSMFDQDKAVQQMLEAGASG----------YILKNSS 107

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              ++   R    G          K   V       LTGR+ E L  I +G+T+ EIA  
Sbjct: 108 LKELLYAIRKVHEGEHYYDPNITVKQKSVSPKSKAVLTGRQREILKLIGQGRTNQEIADQ 167

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L I + TV  +  +++RK   +     + YA+   
Sbjct: 168 LFIGKTTVETHRKNMIRKLGLQGAGELLRYALEKK 202


>gi|78061780|ref|YP_371688.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969665|gb|ABB11044.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 246

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%)

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           F  G I    RL  +   A       +S       +  LT RE +    + +G+++ EIA
Sbjct: 152 FAPGEIDALARLQPVAEAALSPLLRVRSGIHRISCEERLTYREEQIARLVRDGRSNKEIA 211

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAI 237
             L + + TV  ++  + RK     R+  +
Sbjct: 212 RDLALGQPTVKTHLMRMYRKLGVSNRTELV 241


>gi|317132102|ref|YP_004091416.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470081|gb|ADU26685.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
          Length = 211

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 9/149 (6%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           +R   +        + +R   +   V  T  ++ +    + N    Y     +  R    
Sbjct: 55  IRMPVMDGVAATAAIKKRHPSIAVLVLTTFDDDESIVQALKNGAIGYLLKDIEADR---- 110

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
             L+            W   L A    ++  +     G+   LTGRE +    ++ G T+
Sbjct: 111 --LIQTVRDAAQGQFTWPAMLAAKLTKHLCANVPALSGRLAALTGRERDVANLLAGGYTN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKT 232
             IA +L +S  TV N+++SI  K     
Sbjct: 169 RRIAQMLYLSEGTVKNHVSSIYSKLGIYD 197


>gi|307727417|ref|YP_003910630.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587942|gb|ADN61339.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 220

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 12/162 (7%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFDVARIRIG 143
           V     S  +    +L R  +    +F    E I     +D     Y +       +   
Sbjct: 59  VSLPGASGIEAMRRMLAREQDARVLIFSVHEEAIFVRRALDAGALGYVTKASAPDVLVEA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++  +   +  D    + L  A+                +L+ RE E L  + +G T 
Sbjct: 119 VRIVARRASYLSPDISQALALRNAF---------SEGPPGRQLSAREFEVLRLLVQGYTL 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  LG+S+ TV N+ + I +K            A R  +
Sbjct: 170 PSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMASRLGL 211


>gi|197251701|ref|YP_002148042.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197215404|gb|ACH52801.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 248

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E +  + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 183 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|22124427|ref|NP_667850.1| response regulator/transcription activator [Yersinia pestis KIM 10]
 gi|45440263|ref|NP_991802.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108810019|ref|YP_653935.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|108813574|ref|YP_649341.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|145600963|ref|YP_001165039.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|150260698|ref|ZP_01917426.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|162420249|ref|YP_001608242.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           Angola]
 gi|165926713|ref|ZP_02222545.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936411|ref|ZP_02224979.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010556|ref|ZP_02231454.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213920|ref|ZP_02239955.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167402479|ref|ZP_02307934.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167418702|ref|ZP_02310455.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426185|ref|ZP_02317938.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469425|ref|ZP_02334129.1| putative DNA-binding response regulator EsrB [Yersinia pestis FV-1]
 gi|218927460|ref|YP_002345335.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229836506|ref|ZP_04456672.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229840115|ref|ZP_04460274.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842196|ref|ZP_04462351.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904063|ref|ZP_04519176.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|270488948|ref|ZP_06206022.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294502330|ref|YP_003566392.1| putative two-component response regulator [Yersinia pestis Z176003]
 gi|21957213|gb|AAM84101.1|AE013653_1 response regulator/transcription activator [Yersinia pestis KIM 10]
 gi|45435119|gb|AAS60679.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777222|gb|ABG19741.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|108781932|gb|ABG15990.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|115346071|emb|CAL18939.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|145212659|gb|ABP42066.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|149290106|gb|EDM40183.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|162353064|gb|ABX87012.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           Angola]
 gi|165915527|gb|EDR34136.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921336|gb|EDR38560.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990646|gb|EDR42947.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204895|gb|EDR49375.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962696|gb|EDR58717.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167048129|gb|EDR59537.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054896|gb|EDR64698.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229679833|gb|EEO75936.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|229690506|gb|EEO82560.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696481|gb|EEO86528.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706190|gb|EEO92198.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262360410|gb|ACY57131.1| putative two-component response regulator [Yersinia pestis D106004]
 gi|262364360|gb|ACY60917.1| putative two-component response regulator [Yersinia pestis D182038]
 gi|270337452|gb|EFA48229.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294352789|gb|ADE63130.1| putative two-component response regulator [Yersinia pestis Z176003]
 gi|320013881|gb|ADV97452.1| putative two-component response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 210

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 15/169 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  ++  + L   D    ++Q       P    L    T  A  +  Y S TF+   +  
Sbjct: 49  PDMVILDLGLPGMDGLDVIIQLLR--RWPALKIL----TLTARNEEHYASRTFNSGALGY 102

Query: 143 GL------MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            L      +L+     + +  R  +  L A+    + +  D        LT RE + L  
Sbjct: 103 VLKKSPQQILMAAIQTVAIGKRYIDPALDASMVIKLTQGSD---NTPPVLTPRERQILKL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EG  +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 160 ITEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|299068677|emb|CBJ39914.1| transcriptional regulator, LuxR family [Ralstonia solanacearum
           CMR15]
          Length = 302

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   ++ R+ E L  +S G +   +  +LGIS  TV  +  ++ R+   + +S A+
Sbjct: 141 AEAAQRLNVSQRQYEVLVLLSRGHSVKGVGRLLGISEATVKTHACTLYRRLNVRNKSEAV 200

Query: 238 AYAVRNNI 245
             A+R  I
Sbjct: 201 YAAMRLGI 208


>gi|257062833|ref|YP_003142505.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790486|gb|ACV21156.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 320

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            K   L+ RE E L  I  GK +  IA  + +S NTV  ++ +I++KT  + R   I 
Sbjct: 258 AKRNNLSKRETEVLALIVMGKDNQNIASEMTLSLNTVKVHVHNILKKTGQQNRQALIR 315


>gi|241665290|ref|YP_002983649.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240867317|gb|ACS64977.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 231

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
            + +      +LQ+P      V           A M    + Y   ++    I   L L+
Sbjct: 59  GIDDVPALSRLLQQPHPRHIAVLGETDSAAHVRALMQLNVSAYLLKSYSGKLIAAALELV 118

Query: 148 FPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              GR +     L     +AA  A+   + D        LT R+ E L  +S G     I
Sbjct: 119 LAGGRYVPASVVLARPEAIAA--ASPGGNNDCAM---LGLTQRQYEILVLLSRGHPVKTI 173

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + +LGIS  T   +I ++ R+   ++R+ A+  A +  
Sbjct: 174 SRMLGISEATAKAHINALYRRLEVRSRTEAVFVATQRG 211


>gi|300722895|ref|YP_003712190.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
 gi|297629407|emb|CBJ90008.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
          Length = 229

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE E + +I +G ++ +IA  L +S  T++N+I ++ +KT T +R   + Y   +NI
Sbjct: 151 FSKREWEIIFYIMQGYSTKDIAERLFVSYRTISNHIQNVYKKTETNSRKSLVDYCYEHNI 210


>gi|254282747|ref|ZP_04957715.1| monoamine regulon transcriptional regulator [gamma proteobacterium
           NOR51-B]
 gi|219678950|gb|EED35299.1| monoamine regulon transcriptional regulator [gamma proteobacterium
           NOR51-B]
          Length = 239

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 32/53 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + + L+ R++E +  + EG ++ +++  LGIS  TV  +I+ I  K   ++R+
Sbjct: 168 RQYNLSPRQIEVVRLLREGASNKKLSAHLGISLPTVKTHISQIFEKVGVRSRT 220


>gi|187926961|ref|YP_001893306.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|187728715|gb|ACD29879.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 221

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLL 147
            + +      +LQ+P      V           A M    + Y   ++    I   L L+
Sbjct: 49  GIDDVPALSRLLQQPHPRHIAVLGETDSAAHVRALMQLNVSAYLLKSYSGKLIAAALELV 108

Query: 148 FPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              GR +     L     +AA  A+   + D        LT R+ E L  +S G     I
Sbjct: 109 LAGGRYVPASVVLARPEAIAA--ASPGGNNDCAM---LGLTQRQYEILVLLSRGHPVKTI 163

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + +LGIS  T   +I ++ R+   ++R+ A+  A +  
Sbjct: 164 SRMLGISEATAKAHINALYRRLEVRSRTEAVFVATQRG 201


>gi|160887524|ref|ZP_02068527.1| hypothetical protein BACOVA_05544 [Bacteroides ovatus ATCC 8483]
 gi|260171218|ref|ZP_05757630.1| putative transcriptional regulatory protein [Bacteroides sp. D2]
 gi|293371021|ref|ZP_06617563.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|299146534|ref|ZP_07039602.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|156107935|gb|EDO09680.1| hypothetical protein BACOVA_05544 [Bacteroides ovatus ATCC 8483]
 gi|292633951|gb|EFF52498.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|298517025|gb|EFI40906.1| transcriptional regulator [Bacteroides sp. 3_1_23]
          Length = 216

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDV------- 178
           R+   + +++   I  M +     +IL++   E     L+       F  + +       
Sbjct: 80  RWILFSNELSEDFIRRMSIERNIGMILKENSGEEIHSALMCTAHGERFLCHQITNLLIIG 139

Query: 179 --HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT  E++ L  I+ GK+  EIA+    S +T+  +  +I RK        A
Sbjct: 140 SDKPEIHSVLTVTEIDILKLIAHGKSVKEIALERTSSIHTIITHKKNIFRKLGVNNVYEA 199

Query: 237 IAYAVRNNIV 246
             Y +R  ++
Sbjct: 200 TKYTLRAGLI 209


>gi|103486489|ref|YP_616050.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976566|gb|ABF52717.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis
           RB2256]
          Length = 195

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ R+ E L  ++EG  + +IA  LG+S  T+  + ++++R    +T + AI  AV   
Sbjct: 136 LSPRQREVLLLMAEGLLNKQIAWRLGLSERTIKMHRSALLRSLGVETTADAIRLAVEAG 194


>gi|94310139|ref|YP_583349.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93353991|gb|ABF08080.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 210

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 2/129 (1%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ENI  P      +  +   V+ ++ G +    K       R     +L   + +   + +
Sbjct: 81  ENIDIPIVFITGHGDVPMAVSTMKRGAIDFIEKPFDESELRSLVERMLQKARTDHSAARE 140

Query: 178 VHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
               KD   +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T + 
Sbjct: 141 QRAAKDLLSKLTTREQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVAD 200

Query: 236 AIAYAVRNN 244
            +  A+  N
Sbjct: 201 LLRLALSRN 209


>gi|302879267|ref|YP_003847831.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302582056|gb|ADL56067.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 211

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D        L+ RE + L  I  GKT  E+A +L +S  TV+ Y + I+ K   +  + 
Sbjct: 139 SDSAKSPHETLSDREYQVLRLIGSGKTVSEVAKLLSLSVKTVSTYRSHILDKMNLRNNAE 198

Query: 236 AIAYAVRNNI 245
              Y ++N +
Sbjct: 199 LTLYVIQNGL 208


>gi|237714874|ref|ZP_04545355.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262406858|ref|ZP_06083407.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|294647174|ref|ZP_06724773.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294809214|ref|ZP_06767930.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|298483630|ref|ZP_07001805.1| transcriptional regulator [Bacteroides sp. D22]
 gi|229445199|gb|EEO50990.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262355561|gb|EEZ04652.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|292637461|gb|EFF55880.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294443608|gb|EFG12359.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|295084732|emb|CBK66255.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bacteroides xylanisolvens XB1A]
 gi|298270200|gb|EFI11786.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 259

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  I +G +S EIA  L IS NTVN +  +I+ K +      A   A
Sbjct: 197 LSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAA 251


>gi|226362313|ref|YP_002780091.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240798|dbj|BAH51146.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 690

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 32/79 (40%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E  L  A              +   LT RE E    ++ G ++ +IA  L I++ T   +
Sbjct: 603 EETLEYAVGGPSQPPAARPPSEPVRLTPRETEVAELVAGGMSNRDIAGKLVIAQRTAEGH 662

Query: 221 IASIMRKTATKTRSGAIAY 239
           +  I+ K   ++R+    +
Sbjct: 663 VERILTKLGFRSRAQIAVW 681


>gi|71906325|ref|YP_283912.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71845946|gb|AAZ45442.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 203

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           DW   L+  + +   D   ++ +R  E+ C    TLP  +    G          + AR 
Sbjct: 49  DWTGCLLIDIRMPVMDG-LSLQERLIEMGC----TLPVVVITGHG--------DVESARR 95

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTW 196
                 +    + I  D++ E    A    ++ +       K      +LT RE E +  
Sbjct: 96  AFKSNAIDFLEKPIDHDKMLEAIEQAFNSQSLMQDRKSASEKANYLLGQLTPREQEVMNL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  G  + EIA  LGIS  TV  + A +M K    + +  +  ++ 
Sbjct: 156 VVGGYHNREIAEKLGISVRTVEVHKAHVMSKLDVDSVADLVRLSMH 201


>gi|62181634|ref|YP_218051.1| response regulator [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62129267|gb|AAX66970.1| putative response regulators consisting of a CheY-like receiver
           domain and a HTH DNA-binding domain [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
          Length = 227

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               I  + L         +RL       LL     +  +  +        LT +E E +
Sbjct: 114 GHHIIAGISLMRDIPFSSEERLRAQAVQPLLGLAIHDSLQEDNDLASI---LTAKEREIV 170

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 171 GMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|254254306|ref|ZP_04947623.1| Transcriptional regulator LuxR family [Burkholderia dolosa AUO158]
 gi|124898951|gb|EAY70794.1| Transcriptional regulator LuxR family [Burkholderia dolosa AUO158]
          Length = 251

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 128 NRYCSLTFDVARIR---------IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             +  L F   R R          G    F  G I    RL  +   A       +    
Sbjct: 128 GAFSLLRFATDRARGRAACTGADDGTTARFAPGEIDALARLQPVAEAALGPLLRARRGIH 187

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             G +  LT RE +    + +G+++ EIA  L + + TV  ++  + RK     R+G +
Sbjct: 188 RIGCEARLTYREEQIARLVRDGRSNKEIARDLALGQPTVKTHLMRMYRKLGVSNRTGLV 246


>gi|332526482|ref|ZP_08402595.1| two-component response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332110751|gb|EGJ10928.1| two-component response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 248

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
           RL     L                +   LT R+ E L  + +G  +  IA  L +S  TV
Sbjct: 149 RLVPDAPLGERARPEPHQEPPSLAR-IGLTPRQGEVLGLLLKGLPNKLIARELDLSVETV 207

Query: 218 NNYIASIMRKTATKTRSGAI 237
            +++A+++R     TR+ A+
Sbjct: 208 KDHVAAVLRALGVSTRTQAV 227


>gi|260426159|ref|ZP_05780138.1| autoinducer-binding transcriptional regulator, LuxR family
           [Citreicella sp. SE45]
 gi|260420651|gb|EEX13902.1| autoinducer-binding transcriptional regulator, LuxR family
           [Citreicella sp. SE45]
          Length = 255

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  LT R+ E L W+ +GKT  +IA I+G+++ T+  ++         +T + A+A A 
Sbjct: 186 PNQSLTKRQREALEWVGDGKTMQDIAAIMGLTQATIEKHLRLAREALNVETTAQAVAKAA 245


>gi|229522252|ref|ZP_04411668.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM
           11079-80]
 gi|229340237|gb|EEO05243.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM
           11079-80]
          Length = 208

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               L Q +   +I+    P +    ++L E+ + +N   R   +   ++ +        
Sbjct: 39  AFHALTQSEVDVAIIDISMPDE--NGLSLLERLRQHNP--RFKAIILSIYDSASFVKKAL 94

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y S     + +   +  +    R +  D L  +            S        
Sbjct: 95  DAGAQGYLSKRCGPSELVSAIRTVASGRRYLCADALVNL------------SNPDINNVL 142

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT REVE    + +GK   EIA  L +S  TV+ + A+I+ K         I +A+++
Sbjct: 143 ADLTKREVEVFDLLVKGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQH 202

Query: 244 NIV 246
           +++
Sbjct: 203 HLL 205


>gi|170740380|ref|YP_001769035.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168194654|gb|ACA16601.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 244

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           S  +  G+  ELT R+ + L  + EGK++ EIA  L +   TV  ++A+++R    + 
Sbjct: 173 SESLRPGRTVELTPRQRDVLALLVEGKSNKEIARQLQLGEGTVKVHMAALLRSLGVQN 230


>gi|158392735|dbj|BAF91145.1| DNA-binding response regulator [Pseudomonas putida]
          Length = 221

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 170 ANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
               +S    +  +    LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK
Sbjct: 138 GRRNQSEHAGFAPELLQALTRKQLLVLERMTKGESNKQIAYNLDIAETTVKAHVSAILRK 197

Query: 228 TATKTRSGAIAYA 240
                R  AI  A
Sbjct: 198 LNVHNRVQAILSA 210


>gi|110835015|ref|YP_693874.1| transcriptional regulator DegU [Alcanivorax borkumensis SK2]
 gi|110648126|emb|CAL17602.1| transcriptional regulatory protein degu (protease production
           enhancer protein) [Alcanivorax borkumensis SK2]
          Length = 216

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R I+    W               +     +   LT ++   +  + EG  +  IA  L 
Sbjct: 117 RKIMDGERWLPEKARRAMPPTLPDHSAMSDRITSLTPQQFRVMGMLMEGMQNKVIAYELD 176

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAI 237
           +S  TV  ++ +I RK   + R+ A+
Sbjct: 177 VSEATVKAHMTAIFRKLGVRNRTQAV 202


>gi|317403306|gb|EFV83822.1| LuxR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 218

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++ D     +  LT RE     + + G+++ +IA  LGI+  TV  +++++  K     R
Sbjct: 137 RAQDSRSWDNGTLTERETTVARYAASGQSNAQIADALGITERTVKAHLSAVFEKLEVTDR 196

Query: 234 SGAIAYAVR-NNI 245
                 A+R + I
Sbjct: 197 LQL---ALRVHGI 206


>gi|298247840|ref|ZP_06971645.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297550499|gb|EFH84365.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1029

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+ +E   L  ++ G ++ +IA  L +S NT+   + S+ RK     R  A   A +  +
Sbjct: 969  LSPQEERVLRLLASGNSNADIARELVVSVNTIRTQLQSVYRKLNVSNRVEASNTARQLGL 1028

Query: 246  V 246
            V
Sbjct: 1029 V 1029


>gi|291300701|ref|YP_003511979.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290569921|gb|ADD42886.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 931

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            E++ RE E L  + +  ++ EIA  L IS  TV +++++++RK A   R     +A
Sbjct: 3   VEISTRESEVLALVGDHLSNAEIAARLFISVRTVESHVSALLRKLAVPDRRALARHA 59


>gi|229134173|ref|ZP_04262991.1| Response regulator [Bacillus cereus BDRD-ST196]
 gi|228649281|gb|EEL05298.1| Response regulator [Bacillus cereus BDRD-ST196]
          Length = 597

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 7/172 (4%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMD---NRYCSLTF 135
            P  ++  + + E +    +L+   R   +   +  T  +++     ++     Y   + 
Sbjct: 426 QPDIVLMDIQMPEMNGIEALLEMKQRWPNMKIVLMTTFEDSLQAATALEHGAEGYMLKSI 485

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               +   L L++  G  I +     +   +   +  + K         + LT RE+E L
Sbjct: 486 HPQEMNEVLKLIYNGGTWIDQSAATRVFEEMKRQREQLEKIRLTKQTYPYGLTKREMEIL 545

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +S G     IAV L +S  T+ NY +++  K     R  AI  A   NI+
Sbjct: 546 EHLSNGLRYKSIAVKLLLSEGTIRNYCSNLYSKLGVNNREEAIKMARTENIL 597


>gi|56475502|ref|YP_157091.1| two-component response regulator [Aromatoleum aromaticum EbN1]
 gi|56311545|emb|CAI06190.1| Two-component response regulator [Aromatoleum aromaticum EbN1]
          Length = 211

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 86  LVRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           LV  + +     +    + R      PV         P A            V +  +  
Sbjct: 57  LVLDVRMPGMSGFELFDELRRQSSTLPVIFITGHGDVPMA---------VSAVKKGAVDF 107

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTS 203
           +      R +L   L E  L A  ++   +  +    +    LT RE E L  I  GK +
Sbjct: 108 IEKPFGDRDML--GLIEGCLAAEQESRGKRRLEAETTRRLGSLTQREREVLDLIIAGKLN 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +IA +LGIS  TV  + A +M K    + +  + + +
Sbjct: 166 KQIADVLGISIKTVEVHRARVMEKMGAHSLAKLVRHVI 203


>gi|328544835|ref|YP_004304944.1| Two component transcriptional regulator, LuxR family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326414577|gb|ADZ71640.1| Two component transcriptional regulator, LuxR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 201

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 42/110 (38%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
               +  +  R      +  P   + + DR+ E       ++         +    +LT 
Sbjct: 87  GDIPMAVEAIRNGAFDFIEKPFNAVTVVDRVREGIAATRARSQTQSDLPGDFAGAEQLTR 146

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           RE E L+ I+ G ++ E    LGIS  TV  + A IM K   +  +  + 
Sbjct: 147 REREVLSEITSGASNKEAGRSLGISPRTVEVHRARIMEKLGARNAADLVR 196


>gi|237718307|ref|ZP_04548788.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|229452491|gb|EEO58282.1| transcriptional regulator [Bacteroides sp. 2_2_4]
          Length = 259

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE E L  I +G +S EIA  L IS NTVN +  +I+ K +      A   A
Sbjct: 197 LSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACRAA 251


>gi|168819831|ref|ZP_02831831.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343483|gb|EDZ30247.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087570|emb|CBY97334.1| Transcriptional activator protein luxR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 227

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E +  + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 162 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|153870575|ref|ZP_01999948.1| regulatory protein, LuxR [Beggiatoa sp. PS]
 gi|152072960|gb|EDN70053.1| regulatory protein, LuxR [Beggiatoa sp. PS]
          Length = 210

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E    ++EGK+ +EIA IL +S  TV ++   I +K    + S     A+R  
Sbjct: 147 QLSPREFEVFLLLAEGKSVNEIAEILTLSSKTVGHHYTHIKKKLKISSISELTRLAIRGG 206

Query: 245 IV 246
           ++
Sbjct: 207 VL 208


>gi|296784937|dbj|BAJ08165.1| putative LuxR-family transcriptional regulator [Streptomyces
           murayamaensis]
          Length = 381

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           K +ELT RE+E   +I+ G  + E+A  L +S +TV +++ +I  K    +R   +A 
Sbjct: 305 KAYELTDRELEITQYIARGLGTAEMAGKLFLSPHTVRDHVKAIFEKVRVSSRGELVAK 362


>gi|317054459|ref|YP_004118484.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
 gi|316952454|gb|ADU71928.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 243

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +    K+   + RE E L W S+G T  ++A +L I+ +T+  ++  +++K   K    
Sbjct: 163 SEGEEVKEDVFSARESEILYWCSKGYTYSQVAEMLNITVSTIKFHMGKVVKKMGVKNAKH 222

Query: 236 AIAYAVRNNIV 246
           AI+  +   ++
Sbjct: 223 AISLGIELKMI 233


>gi|119025065|ref|YP_908910.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764649|dbj|BAF38828.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 221

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISR 214
           +RL    ++  ++     +  +   ++    LT RE + ++  ++G    EIA  L IS 
Sbjct: 130 ERLCGGNVMEGFEPPALANVRIRREEETSPRLTVREEQIISLCADGMLDREIAERLDISE 189

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +TV  ++  I++K   KT   A+A  VR++
Sbjct: 190 STVRKHMQGILKKLNCKTARQAVALWVRSH 219


>gi|330999811|ref|ZP_08323516.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329573814|gb|EGG55403.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 211

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    I+EG  + +IA  LGI+  TV  + A++  K   +    A+ +A +  +
Sbjct: 146 LSPREQETARLIAEGLLNKQIADRLGITERTVQVHRANVFSKFGVRN---AVQFAQKLML 202

Query: 246 V 246
           +
Sbjct: 203 I 203


>gi|296169886|ref|ZP_06851498.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum
            ATCC BAA-614]
 gi|295895442|gb|EFG75144.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum
            ATCC BAA-614]
          Length = 1109

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 186  LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LT  E + +  + EG  + EI   L +S  TV  ++  +  K    +R   I
Sbjct: 1052 LTPMEHDVVRLVREGLGNKEIGARLFVSPRTVQTHLTHVYAKLGISSRVELI 1103


>gi|123442878|ref|YP_001006854.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332161274|ref|YP_004297851.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122089839|emb|CAL12695.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|325665504|gb|ADZ42148.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330864132|emb|CBX74201.1| fimbriae Z protein [Yersinia enterocolitica W22703]
          Length = 210

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D++ I      +         + L ++            S      +  
Sbjct: 97  AGANGFISKNKDISEILFAAQNVLRGYSFFPSETLTQLA--------GQPSSHDPVNRAR 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N
Sbjct: 149 LLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHN 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|328886525|emb|CCA59764.1| hypothetical protein SVEN_6478 [Streptomyces venezuelae ATCC 10712]
          Length = 204

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  LT RE+  L+  ++G    EIA  L +++ TV NY+AS++RK   + R  AI  A
Sbjct: 139 AAEMPLTRRELSVLSLAADGAPVAEIAATLFLTKGTVRNYMASVIRKVGARNRVDAIRIA 198


>gi|325524436|gb|EGD02506.1| two-component response regulator transcription regulator protein
           [Burkholderia sp. TJI49]
          Length = 224

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  + EG TS ++   L +S  TV+ + A++MRK      +G + +A+   +
Sbjct: 156 LTSRERTVLRLVVEGHTSRQVGECLKVSPKTVDKHRANLMRKLGIANLTGLVHFAIDIGV 215

Query: 246 V 246
           +
Sbjct: 216 L 216


>gi|289748871|ref|ZP_06508249.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
           tuberculosis T92]
 gi|289689458|gb|EFD56887.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium
           tuberculosis T92]
          Length = 205

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 147 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 204


>gi|194735656|ref|YP_002116072.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194711158|gb|ACF90379.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|322613521|gb|EFY10462.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621113|gb|EFY17971.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624177|gb|EFY21011.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628084|gb|EFY24873.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633204|gb|EFY29946.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636219|gb|EFY32927.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639557|gb|EFY36245.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647511|gb|EFY44000.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648694|gb|EFY45141.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653749|gb|EFY50075.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657855|gb|EFY54123.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663958|gb|EFY60157.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322672975|gb|EFY69082.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678034|gb|EFY74097.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681210|gb|EFY77243.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687860|gb|EFY83827.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323191760|gb|EFZ77011.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199648|gb|EFZ84738.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202605|gb|EFZ87645.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207908|gb|EFZ92854.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212540|gb|EFZ97357.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214977|gb|EFZ99725.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222707|gb|EGA07072.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224210|gb|EGA08503.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230535|gb|EGA14653.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235114|gb|EGA19200.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239153|gb|EGA23203.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244489|gb|EGA28495.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247104|gb|EGA31070.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253413|gb|EGA37242.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256280|gb|EGA40016.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262544|gb|EGA46100.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267360|gb|EGA50844.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269236|gb|EGA52691.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 227

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E +  + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 162 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|221134627|ref|ZP_03560930.1| two component LuxR family transcriptional regulator [Glaciecola sp.
           HTCC2999]
          Length = 212

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 60/155 (38%), Gaps = 13/155 (8%)

Query: 89  CMALSEKDKY---YNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIRI 142
            + +   D +     VL +   +   V        +    M      +   ++   ++  
Sbjct: 55  DLTMPGADHFYGLTAVLDKCANIPVVVITATDNEESVNIAMHLGAKGFIPKSYTSRKMAH 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +M +   G  I       I  +++    M  + ++      ELT +++  +  + +GK 
Sbjct: 115 AIMNVLNGGTFIPD---RYIDAISSTHPEMLTAIELVK----ELTPKQLLVIKCLKQGKK 167

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + EIA  L ++  T+  +I++I +K    +R+  +
Sbjct: 168 NKEIAGELCVTEATIKAHISAIFKKLNVTSRTQIV 202


>gi|83647005|ref|YP_435440.1| transcriptional regulator MalT [Hahella chejuensis KCTC 2396]
 gi|83635048|gb|ABC31015.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
          Length = 907

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            +   LT +E E L  I EG +++ IA  L ++ +TV ++I  + +K    +R  A
Sbjct: 833 ARALALTPKEWEVLRLIGEGSSNERIAERLYVAPSTVRSHIKHVYQKLGISSRVEA 888


>gi|254705374|ref|ZP_05167202.1| LuxR family transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 135

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT REVE +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 70  LTAREVEVVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 121


>gi|197301027|ref|ZP_02663122.2| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197288964|gb|EDY28335.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|322669031|gb|EFY65182.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
          Length = 248

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E +  + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 183 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|149925384|ref|ZP_01913648.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149825501|gb|EDM84709.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 218

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 11/160 (6%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
           P  ++  + L +       +     +F P    L         ++ R     + V     
Sbjct: 49  PDLIIFDLTLVDSKGQET-IDWLDSMF-PKVCGLIYTGFVSEAIEARAAQSGYSVVEKTC 106

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-----VHWGKDFELTGREVECLTWI 197
               L  +   +    L++ G+L    A+   + +     V +     LT R+VE +   
Sbjct: 107 SQSALAHEIESV----LFKSGILNGSSADSVPANEHQSNIVAYPGAKPLTWRQVEIMRMT 162

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +EG ++  +A  +G+S  TV  +I  I ++     ++ A+
Sbjct: 163 AEGLSAKMVAQRIGLSPETVRGHIREIFKRLEVSNKAQAV 202


>gi|332304832|ref|YP_004432683.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172161|gb|AEE21415.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 209

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 19/187 (10%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A+  L + +    +     IV SD     +  + L+     Y    R   +    F    
Sbjct: 40  ATGKLALEYMQSDDGAKVDIVLSDIEMPDMTGLELA--QHLYEAKARSHTIILTTFARSG 97

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                       Y         +   +  +   G  I  + +                  
Sbjct: 98  YLRRAMDSGVKGYLLKDSPSHELIAAIHKVHQGGAAIAPELMVGS--------------- 142

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             W +   LT +E   L    +G ++++IA  L +S  TV NY++S   K   K R  A 
Sbjct: 143 --WMEKDPLTDKERRALRLAKDGLSTEDIASKLFLSTGTVRNYLSSASNKLNAKNRIEAA 200

Query: 238 AYAVRNN 244
             A +N 
Sbjct: 201 RIAHQNG 207


>gi|330975353|gb|EGH75419.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 87

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A 
Sbjct: 24  LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAA 75


>gi|317404098|gb|EFV84550.1| DNA-binding response regulator [Achromobacter xylosoxidans C54]
          Length = 218

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE + L  I+ G  + +IA  LG+S  TV  +  +I RK     ++  I YAV N 
Sbjct: 158 LTQRERDVLRHIASGHANKQIAQALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVENR 216


>gi|257064995|ref|YP_003144667.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792648|gb|ACV23318.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 545

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%)

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +     +    H    ++LT RE E L  + EGK    I+  L IS NTV  ++  I  K
Sbjct: 462 FAQEEMRRKCEHAVVSYQLTPRESEVLALLMEGKRPKAISDELVISINTVRLHVKGIYAK 521

Query: 228 TATKTR 233
               +R
Sbjct: 522 MGVHSR 527


>gi|297203955|ref|ZP_06921352.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713149|gb|EDY57183.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 894

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE + L  +++  +++EIAV L +S NTV  ++ S+ RK A   RS A+  A    
Sbjct: 833 ELSERERDVLQRLAQMMSTEEIAVDLYLSVNTVKTHLKSLYRKLAVNRRSEAVHRARDMR 892

Query: 245 IV 246
           ++
Sbjct: 893 LL 894


>gi|134103618|ref|YP_001109279.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291004845|ref|ZP_06562818.1| protein kinase/LuxR family transcriptional regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133916241|emb|CAM06354.1| protein kinase/transcriptional regulator, LuxR family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 798

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           D  LT RE E    ++   T+ EIA  L +S  TV  ++ +++ K    +R  A+A
Sbjct: 727 DVVLTRRETEVARLVAHNLTNREIAARLVLSPRTVETHVQNVLNKWGVSSR-EAVA 781


>gi|110835379|ref|YP_694238.1| transcription regulator [Alcanivorax borkumensis SK2]
 gi|110648490|emb|CAL17966.1| transcription regulator, putative [Alcanivorax borkumensis SK2]
          Length = 203

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 158 RLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
            + EI    +Y +  F+        +   LT +++  LT + EG  + EIA  L +S NT
Sbjct: 114 AIREIMAGRSYFSESFRLMAGAAPEEALTLTRQQLAILTMLQEGHGNKEIARQLFVSVNT 173

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  ++  +  K     R+  I  A +  ++
Sbjct: 174 IKTHLRLLYEKLDVPNRTACIEKARQIGLL 203


>gi|319783151|ref|YP_004142627.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169039|gb|ADV12577.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 230

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 11/162 (6%)

Query: 83  PFDL-VRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           PFDL +  +++ +   +  +LQ R      PV                 Y +  F     
Sbjct: 57  PFDLALLDLSMPDVHGFDGLLQLRTRYPRLPVVIVSGYEEPKIISEALSYGAAGFIPKSA 116

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTW 196
           R     L    R ++   ++   +   Y+     +         +    LT +++  L  
Sbjct: 117 RKS--DLAAAIRSVMEGAIY---VPETYEGRPPDADSADRADMVQRLSTLTPQQLRVLQM 171

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + +G  + +IA  L +   TV  +++ I+RK    +R+ A+ 
Sbjct: 172 LRQGLLNKQIAYELQVGETTVKAHVSEILRKLNVYSRTQAVI 213


>gi|269795934|ref|YP_003315389.1| luxR family transcriptional regulator [Sanguibacter keddieii DSM
           10542]
 gi|269098119|gb|ACZ22555.1| transcriptional regulator, luxR family [Sanguibacter keddieii DSM
           10542]
          Length = 903

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 19/214 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             +LL R   +   + +   M A    V       +R   + EQ L+  V   W  +  R
Sbjct: 706 GRELLDRARQVPTRL-YGSYMQAEVRLVRLDASGWLRDPAYSEQALELAV---WARE--R 759

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +   E D  +  +         V H     ++    +  R   L   V   R   +   
Sbjct: 760 GLNRVELDAVHRAV---------VAHYGDGRMSRATDLVERARELVSQVDGRRAQALTAH 810

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +    +      + L+A+++      +     +   LT RE E     + G +S EIA 
Sbjct: 811 VEA---MASGDPHLLLVASHELGQCGVWLPPTQRSVTLTRREQEIAGLAAGGLSSREIAE 867

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L +S  TV+++++ +  K   K R    A A+R
Sbjct: 868 RLVLSVRTVDSHLSRVFAKAGVKNRRELGA-ALR 900


>gi|257789934|ref|YP_003180540.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257473831|gb|ACV54151.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 321

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + +GK  +L+ RE E L  + +G  +  IA  L +S +TV  ++ +I++K+    R   I
Sbjct: 255 MRYGKQHQLSEREREVLYLVLQGNDNQNIASSLQLSPSTVKVHVHNILQKSGQANRQELI 314

Query: 238 A 238
            
Sbjct: 315 R 315


>gi|150395391|ref|YP_001325858.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150026906|gb|ABR59023.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 215

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 89  CMALSEKDKYYNVLQ-RPTELFCPVF----HTLPENITPPA-GMDNRYCSLTFDVARIRI 142
            + +        ++  R      PV     H  P  I          + S +  +  IR 
Sbjct: 57  DLTMPGVSGLSGLIALRAEFPSLPVMIVSAHDDPATIHRALDLGAAGFLSKSAGIEEIRD 116

Query: 143 GLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           G+  +      +    DR  E     A   +  ++          LT ++   L+ ++EG
Sbjct: 117 GIAKVMAGEVFVPAGYDRNQEYEPEVADLLHRLQT----------LTPQQSRVLSMLAEG 166

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             + +IA  LG+S  T+  ++++I+ K    +R+ A+    +  
Sbjct: 167 LLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKLG 210


>gi|603067|gb|AAA66239.1| VsrC [Ralstonia solanacearum]
          Length = 220

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT R+   L  + EG  +  IA  LG++ NTV  ++++I+++   +TR   I+   R
Sbjct: 154 ELGLTPRQGSVLALLLEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISRMER 213

Query: 243 NNI 245
             +
Sbjct: 214 FRL 216


>gi|325919524|ref|ZP_08181543.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325923815|ref|ZP_08185429.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325545709|gb|EGD16949.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325550000|gb|EGD20835.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 200

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            W +   L+ RE   L    EG+++ EIA  L +S  TV N+++  + K     R  A  
Sbjct: 133 AWVEADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNHLSECIGKLGVANRIEAYR 192

Query: 239 YAVRNN 244
            A +  
Sbjct: 193 LARQKG 198


>gi|307082817|ref|ZP_07491930.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu012]
 gi|308367460|gb|EFP56311.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu012]
          Length = 199

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E++ +  + EG  + +IA  L +S  TV  ++  +  K    +R      A R 
Sbjct: 141 LTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQLAQAAARR 198


>gi|291436472|ref|ZP_06575862.1| LuxR-family transcriptional regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291339367|gb|EFE66323.1| LuxR-family transcriptional regulator [Streptomyces ghanaensis ATCC
           14672]
          Length = 178

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+GRE + L  ++   +++EIA  L +S NTV  ++ S  RK +   R+ A+  A    
Sbjct: 117 ELSGRERDVLRRLALMMSTEEIAADLYVSVNTVKTHLKSAYRKLSVSRRNEAVRRARELG 176

Query: 245 IV 246
           ++
Sbjct: 177 LL 178


>gi|270260780|ref|ZP_06189053.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044264|gb|EFA17355.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 201

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            + +    +   LT +E++ L  +S+G ++ +IA +L IS  TV+ +  +I+RKT     
Sbjct: 130 MAEETQPAEGVLLTPKELQILGLLSKGLSNLQIAEMLNISNKTVSTHKKNILRKTGASNL 189

Query: 234 SGAIA 238
              +A
Sbjct: 190 LELVA 194


>gi|300773710|ref|ZP_07083579.1| possible transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759881|gb|EFK56708.1| possible transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 215

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ +  I +G  S  I+  L IS NTV  +  +I +K   K   G +  A++ ++
Sbjct: 155 LTNREIQIIQLICDGHNSKVISEKLFISFNTVETHRKNIFQKLNIKNSLGLLRLAIQYDL 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|111025215|ref|YP_707635.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110824194|gb|ABG99477.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 561

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE +    +S+G T+  IA  L IS+ T   ++  I+ K    +RS   A+ V 
Sbjct: 475 DTTLTRRERQVAYLVSKGMTNRAIASELVISQRTAQGHVEHILTKLGFNSRSQIAAWIVE 534

Query: 243 N 243
            
Sbjct: 535 Q 535


>gi|238787448|ref|ZP_04631246.1| hypothetical protein yfred0001_19670 [Yersinia frederiksenii ATCC
           33641]
 gi|238724235|gb|EEQ15877.1| hypothetical protein yfred0001_19670 [Yersinia frederiksenii ATCC
           33641]
          Length = 209

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+EG  +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 149 LTPRERQVLKLITEGSCNRIIADQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|121725788|ref|ZP_01679088.1| transcriptional regulator UhpA [Vibrio cholerae V52]
 gi|147671836|ref|YP_001215461.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|153211907|ref|ZP_01947754.1| transcriptional regulator UhpA [Vibrio cholerae 1587]
 gi|153830962|ref|ZP_01983629.1| transcriptional regulator UhpA [Vibrio cholerae 623-39]
 gi|229528490|ref|ZP_04417881.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)]
 gi|254285705|ref|ZP_04960668.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226]
 gi|262168530|ref|ZP_06036226.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27]
 gi|262191666|ref|ZP_06049843.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT
           5369-93]
 gi|121631553|gb|EAX63921.1| transcriptional regulator UhpA [Vibrio cholerae V52]
 gi|124116983|gb|EAY35803.1| transcriptional regulator UhpA [Vibrio cholerae 1587]
 gi|146314219|gb|ABQ18759.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|148873558|gb|EDL71693.1| transcriptional regulator UhpA [Vibrio cholerae 623-39]
 gi|150424202|gb|EDN16140.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226]
 gi|227015255|gb|ACP11464.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|229334852|gb|EEO00338.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)]
 gi|262023059|gb|EEY41764.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27]
 gi|262032455|gb|EEY51016.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT
           5369-93]
 gi|327485694|gb|AEA80100.1| Transcriptional regulatory protein UhpA [Vibrio cholerae LMA3894-4]
          Length = 208

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               L Q +   +I+    P +    ++L E+ + +N   R   +   ++ +        
Sbjct: 39  AFHALTQAEVDVAIIDISMPDE--NGLSLLERLRQHNP--RFKAIILSIYDSASFVKKAL 94

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y S     + +   +  +    R +  D L  +            S        
Sbjct: 95  DAGAQGYLSKRCGPSELVSAIRTVASGRRYLCADALVNL------------SNPDINNVL 142

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT REVE    + +GK   EIA  L +S  TV+ + A+I+ K         I +A+++
Sbjct: 143 ADLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQH 202

Query: 244 NIV 246
           +++
Sbjct: 203 HLL 205


>gi|257142870|ref|ZP_05591132.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 307

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 4/120 (3%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKSYD 177
           ++      D       F + R+  G      +   +   + + E+ LL   +A       
Sbjct: 186 DVVEVLLRDGGAPVAAFSLLRLAGGGRYSAAEIAALHAVQPVVEVALLPPLRAVRGIR-- 243

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                D  LT RE +    + +G+++  IA  L + + TV  ++  + RK     R+  +
Sbjct: 244 -RIACDVRLTHREEQIARLVRDGRSNKAIARDLALGQPTVKTHLLRMFRKLGVSNRTELV 302


>gi|302536696|ref|ZP_07289038.1| two-component system response regulator [Streptomyces sp. C]
 gi|302445591|gb|EFL17407.1| two-component system response regulator [Streptomyces sp. C]
          Length = 208

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 25/186 (13%)

Query: 68  LFQEQKLDSIVSSDWPFDL------VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           L Q  + D +V++    D+      +    ++  +    +      L   V  T      
Sbjct: 37  LAQVARGDEVVAAARSHDVNVALLDIEMPGMTGIEAAAQLRAALPALKIVVLTTFGRPGY 96

Query: 122 PPAGMDNRYCSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
               M+    +        A++   +  +    R+I            A           
Sbjct: 97  LRRAMEAGASAFLVKDAPAAQLADAVRKVLAGQRVIDPTLAAAALAEGA----------- 145

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT RE E L     G T+ E+A  LG+S+ TV NY+++ ++K A + R+ A+ 
Sbjct: 146 -----NPLTDREREVLRAAEFGATNAELASRLGLSQGTVRNYLSTAIQKLAARNRAEAVR 200

Query: 239 YAVRNN 244
            A    
Sbjct: 201 VAREKG 206


>gi|238909924|ref|ZP_04653761.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 248

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E +  + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 183 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|256419067|ref|YP_003119720.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256033975|gb|ACU57519.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 219

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 78/222 (35%), Gaps = 22/222 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +  +D    +   +  L       ++ ++      ++ ++ +     P  ++  + + + 
Sbjct: 7   IAVVDDHTMFRRGLSVLINL--FPNYEVLFEAASGKELIEKMTIEQLPDIVLLDVNMPDM 64

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           D Y +  +   +         P+         +   ++   +     G +L   +   + 
Sbjct: 65  DGYASA-EWLHQHH-------PDIRILALSTMDAETAIIKMIRHGAKGYILKDAEPSELK 116

Query: 156 RDRLWEIGLLAAYQANMFKS-----------YDVHWGKDFELTGREVECLTWISEGKTSD 204
           +    ++  L  Y  +                        +L+ RE+E L      K+  
Sbjct: 117 Q-AFDDVITLGYYYNDTVTRKVMQSINALIDDKSALNAITKLSDREMEFLRLACSEKSYQ 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  + +S  TV+ Y  ++ +K +  TR G + YA++N +V
Sbjct: 176 LIAKEMFVSERTVDGYREALFKKLSVSTRVGLVLYAIKNKLV 217


>gi|254464518|ref|ZP_05077929.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
 gi|206685426|gb|EDZ45908.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
          Length = 220

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   + D   +   + L+      + R  L          A +    D     + 
Sbjct: 97  AGADGFIPKSADPQVLIHAVSLILEGEIFLPRSYLQ-----GGMMAEVPAPLDTSERPEQ 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT R+ +    + +G  + EIA +L +S +T+ +++++I ++  T +RS  IA
Sbjct: 152 SLTARQRDVFELMCKGLANKEIARLLDLSESTIKSHVSAIFKQIGTTSRSKTIA 205


>gi|169795883|ref|YP_001713676.1| LuxR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157421|ref|YP_002319466.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           AB0057]
 gi|215483371|ref|YP_002325582.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|301347889|ref|ZP_07228630.1| response regulator [Acinetobacter baumannii AB056]
 gi|301510141|ref|ZP_07235378.1| response regulator [Acinetobacter baumannii AB058]
 gi|301595140|ref|ZP_07240148.1| response regulator [Acinetobacter baumannii AB059]
 gi|332856103|ref|ZP_08436132.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           6013150]
 gi|332868476|ref|ZP_08438188.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           6013113]
 gi|169148810|emb|CAM86679.1| putative transcriptional regulator (LuxR family) [Acinetobacter
           baumannii AYE]
 gi|213056581|gb|ACJ41483.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           AB0057]
 gi|213987495|gb|ACJ57794.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|332727165|gb|EGJ58622.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           6013150]
 gi|332733363|gb|EGJ64550.1| transcriptional regulator, LuxR family [Acinetobacter baumannii
           6013113]
          Length = 239

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 36/78 (46%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            E  +L   +    ++  +     + LT RE E +  +S+G +  E+A +LGI   T+  
Sbjct: 157 REKRILTLLEPYFTQALPLDLSTQYGLTPREQEVVHLVSKGLSDKEVASLLGIGFTTLRT 216

Query: 220 YIASIMRKTATKTRSGAI 237
           ++ + MRK     R+   
Sbjct: 217 HLNNSMRKIGGNNRTEMA 234


>gi|194444321|ref|YP_002042384.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194402984|gb|ACF63206.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|322716118|gb|EFZ07689.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|326624871|gb|EGE31216.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 227

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E +  + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 162 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|54023878|ref|YP_118120.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54015386|dbj|BAD56756.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 207

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G   +LT +E + L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A  
Sbjct: 140 AEGPLADLTEQERKLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAV 199

Query: 239 YAVRNN 244
            A R  
Sbjct: 200 LATRLR 205


>gi|10954765|ref|NP_066700.1| hypothetical protein pRi1724_p120 [Agrobacterium rhizogenes]
 gi|10567429|dbj|BAB16238.1| riorf119 [Agrobacterium rhizogenes]
          Length = 224

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 20/193 (10%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           Y+G SH+   R D    +    + +  W  D           +  + L+R  +    + H
Sbjct: 51  YLG-SHY--SRIDPVITEAKRRMETFSWTAD-------DWPARGSSELRRFRD--QAIEH 98

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA-AYQANMF 173
            +   +T P                +         +   +L  +     +LA  Y+  + 
Sbjct: 99  GIRSGLTIPVEGSFG------STMMLTFASSEKKAENGKVLDGQKATRAVLAIHYRLKII 152

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  +   K   L+ RE  CL W ++GK++ E A++ GI+  TV +Y+     K    T 
Sbjct: 153 AATTIVAPKRL-LSPREAMCLMWAAKGKSAPETAMLTGINARTVQHYLDKAREKLDAATV 211

Query: 234 SGAIAYAVRNNIV 246
              +A A  + +V
Sbjct: 212 PHLVAIAKDHGLV 224


>gi|221134503|ref|ZP_03560808.1| DNA-binding response regulator [Glaciecola sp. HTCC2999]
          Length = 235

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K +++   K   LT +E+  L ++++G+ +  IA  + IS  TV ++++SI++K     R
Sbjct: 158 KDFEILPEKMQLLTRKELMVLKYLTQGEANKYIAYEMNISETTVKSHVSSILKKLGASNR 217

Query: 234 SGAIA 238
              + 
Sbjct: 218 VKVVV 222


>gi|21726906|emb|CAC93719.1| putative regulatory protein [Lechevalieria aerocolonigenes]
 gi|22535506|dbj|BAC10679.1| putative regulatory protein [Lechevalieria aerocolonigenes]
 gi|22536130|gb|AAN01213.1| putative regulatory protein [Lechevalieria aerocolonigenes]
 gi|22830830|dbj|BAC15755.1| transcriptional activator [Lechevalieria aerocolonigenes]
          Length = 923

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 34/68 (50%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            +++ D        LT  E+   + +++G T+ ++A  + +S +TV  ++  I RK    
Sbjct: 848 HWRTADRPESGWDSLTNTELSVASLVTQGLTNKQVATQMFLSPHTVGFHLRQIFRKLGVH 907

Query: 232 TRSGAIAY 239
           +R+  I +
Sbjct: 908 SRTELIRF 915


>gi|2765824|emb|CAB09344.1| SsrB [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 193

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           L     ++ +  +      +  +   L    +LA          +        LT RE +
Sbjct: 86  LKSSSQQVLLAALQTVAVNKRYIDPTLNREAILA--------ELNADTTNHQLLTLRERQ 137

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I EG T+  I+  L IS  TV  +  ++MRK      +  +  A R  ++
Sbjct: 138 VLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLI 191


>gi|29828530|ref|NP_823164.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29605634|dbj|BAC69699.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 16/214 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +   +S  M   A  E VG         +     +++ +V    P  ++  + +   D  
Sbjct: 15  VRAGLSLMMGGAADIEIVG---------EAADGSEVEQLVDRTRPDVVLMDIRMPTLDGL 65

Query: 99  YNV------LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                       P  +    FH   + +         +       A++   +  +     
Sbjct: 66  AATELLRGRADAPQVVVLTTFHADEQVLRALRAGAAGFVLKDTPPAQLLDAVRRVAGGDP 125

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++      ++ L AA  +   +       +   L  RE E    +  G ++  IA  L +
Sbjct: 126 VLSPAVTRQLMLHAAGGSPDTRRA-TARDRIAALNDREREVAVAVGRGGSNAAIAAELYM 184

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  +++ I+ K     R           ++
Sbjct: 185 SVATVKTHVSRILAKLDLNNRVQIALLTYDAGLL 218


>gi|298253154|ref|ZP_06976946.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
 gi|297532549|gb|EFH71435.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
          Length = 246

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244
           L  +E++ +  +S+G T+++IA  LG+  NT+N +I  I +K     R  AI A+A   N
Sbjct: 159 LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218


>gi|295107623|emb|CBL05166.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 531

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%)

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L + +   +  +R      L A      +         ++LT R+ E L  +++G+ + 
Sbjct: 420 PLSYVREVRLEAERSARSIALEAGAGRALELSTRIVAGRYDLTPRQAEVLYCLAQGRNAG 479

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKT 232
            IA    IS +T  ++I +I  K    +
Sbjct: 480 YIAEKFTISAHTAKSHIYNIYNKLGVHS 507


>gi|283782679|ref|YP_003373433.1| transcriptional regulator, LuxR family [Gardnerella vaginalis
           409-05]
 gi|283441376|gb|ADB13842.1| transcriptional regulator, LuxR family [Gardnerella vaginalis
           409-05]
          Length = 246

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-AYAVRNN 244
           L  +E++ +  +S+G T+++IA  LG+  NT+N +I  I +K     R  AI A+A   N
Sbjct: 159 LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLHVSNRVQAISAFAAMQN 218


>gi|200388129|ref|ZP_03214741.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605227|gb|EDZ03772.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 248

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
               I  + L         +RL    +      ++  S          LT +E E +  +
Sbjct: 135 GHRIIAGISLMRDIPFSSEERLRAQAVQPLLGLSIHDSLQEDNDLASILTAKEREIVGMV 194

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 195 CEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|182440596|ref|YP_001828315.1| LuxR family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178469112|dbj|BAG23632.1| putative LuxR-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 956

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             ++        G    L+ RE       S G ++ EIA  L +S  TV +++A  +RK 
Sbjct: 873 HGHVTVRRPGALGYGDHLSPRERAVARLASVGLSNREIARELVLSHRTVEHHVARALRKL 932

Query: 229 ATKTRSG 235
              +R+ 
Sbjct: 933 GASSRTE 939


>gi|119513392|ref|ZP_01632424.1| Transcriptional Regulator with GAF sensor, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119461942|gb|EAW42947.1| Transcriptional Regulator with GAF sensor, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 224

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 17/200 (8%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           M  + EY G  H  +    L  EQ    I     P     CM  +   +Y  V++R    
Sbjct: 26  MDKIGEYFGVQHCGIY---LIDEQPSSEINVQTIPAV---CMENNPVGRY--VVERHAPT 77

Query: 109 FCPVFHTLPENITPPAGMDNRYC---SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
              +  +  +     +  D+ +     +  D   +    +           D + ++  L
Sbjct: 78  HEQLILSPGDWKHFCSRHDHEHVMTGPIVCDGQLVGTLNLARNQGTEAFNADDIADLSAL 137

Query: 166 AAYQANMFKSYDVHWGKDF------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             + +    +      +         LT RE+E    +++G T+ EI   L I++N+V  
Sbjct: 138 CIHLSAKLATLRAKEARISNSLLVSPLTARELEIAELVAQGLTNAEIGRRLWITQNSVKQ 197

Query: 220 YIASIMRKTATKTRSGAIAY 239
            +  + RK     RS  +A 
Sbjct: 198 ALKRMFRKLGVSARSEMVAK 217


>gi|332142919|ref|YP_004428657.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143036|ref|YP_004428774.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552941|gb|AEA99659.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553058|gb|AEA99776.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 103

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ RE++    I EG+++  IA  L IS  TV  + A+I +K    +RS  IA
Sbjct: 38  LSKRELQVAHKIMEGRSNKVIASELFISERTVKFHCANIYKKLNISSRSALIA 90


>gi|331700269|ref|YP_004336508.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954958|gb|AEA28655.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 201

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +D  LT RE+E L  + +  T+++IA  + +S  TV NY++S M+K    +RS A   A
Sbjct: 136 SEDCPLTDRELEVLRNVDDSGTANDIARRVHLSPGTVRNYLSSAMQKLGAGSRSEAARLA 195

Query: 241 VRNN 244
             + 
Sbjct: 196 RDHG 199


>gi|255262411|ref|ZP_05341753.1| transcriptional regulator, LuxR family [Thalassiobium sp. R2A62]
 gi|255104746|gb|EET47420.1| transcriptional regulator, LuxR family [Thalassiobium sp. R2A62]
          Length = 253

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            LT R+ E L W+ +GKT+ +IA IL  +  TV  ++         +T + A+  A 
Sbjct: 185 PLTSRQREVLEWVGDGKTTQDIATILLRTSATVEKHLRLARDALGVETTAQAVLKAA 241


>gi|212710646|ref|ZP_03318774.1| hypothetical protein PROVALCAL_01712 [Providencia alcalifaciens DSM
           30120]
 gi|212686727|gb|EEB46255.1| hypothetical protein PROVALCAL_01712 [Providencia alcalifaciens DSM
           30120]
          Length = 208

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L A      +          ELT RE E    +  G +   IA  L +S  TV+ + A++
Sbjct: 125 LCADAMRALRQTPQQKQGIQELTNREREVFNLLVAGLSVKVIAEQLNLSHKTVHVHRANV 184

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   ++    + YA+ +NI+
Sbjct: 185 LGKLQCESTIDLVHYALEHNII 206


>gi|254427534|ref|ZP_05041241.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193703|gb|EDX88662.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 220

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 63/164 (38%), Gaps = 7/164 (4%)

Query: 89  CMALSEKDKYYNVLQ-RPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFDVARIRI 142
            + +   D    +   R  +L  PV     E+      +        +   ++   ++  
Sbjct: 54  DLCMPGMDGIALLQSLRERKLRLPVVVVSGEDNAAKIRSALELGALGFIPKSYGSQQMLD 113

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L  +      +      +I  L+  +  +    ++   K   +T R+ + L  +++G +
Sbjct: 114 ALNGVLEGDIYLPDHIEQQINRLSTRRPPLEAEANLAL-KTSGITRRQYDVLQLMAQGYS 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L ++ +TV ++++++         +  +  AV  +I+
Sbjct: 173 NKQIASTLFLTEHTVKSHVSALFVILGASNSTSCVQNAVTRDIL 216


>gi|88797566|ref|ZP_01113155.1| ATP-dependent transcriptional regulator [Reinekea sp. MED297]
 gi|88779738|gb|EAR10924.1| ATP-dependent transcriptional regulator [Reinekea sp. MED297]
          Length = 873

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 33/55 (60%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             ++ +E   L +I +GK++D+IA  + I+ +TV  +I ++ +K +   R  AIA
Sbjct: 809 LGISKKEWRVLQYIIDGKSNDDIAQTMFIAVSTVKTHINNLYKKLSVANRKEAIA 863


>gi|327191602|gb|EGE58614.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 245

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + T RE + L  +  G ++  IA  L +S +TV  ++  IMRK   + R+  +A  ++ 
Sbjct: 177 DFTPREADILAELQSGCSNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVARLIQR 235


>gi|254384074|ref|ZP_04999419.1| luxR family two component system response regulator [Streptomyces
           sp. Mg1]
 gi|194342964|gb|EDX23930.1| luxR family two component system response regulator [Streptomyces
           sp. Mg1]
          Length = 203

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 65/200 (32%), Gaps = 22/200 (11%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE--- 107
           AL   +G    LLV  +     +  ++  +  P   V  + +   D          E   
Sbjct: 18  ALAALLGLEDDLLVVAEAASGPEALAMARAHRPDVAVLDLQMPGADGVSVATALRAELPG 77

Query: 108 --LFCPVFHTLPENITPPAGMDNRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
                   H  P ++        R  +  T    R+   +  +   GR +  +       
Sbjct: 78  IRTMIVTSHGRPGHLKRALAAGVRAFAPKTVSAQRLAELIRTVHAGGRYVDPE------- 130

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LAA         D     D  LT RE E L    +G    EIA    +S+ TV NY++S 
Sbjct: 131 LAA---------DAISAGDSPLTAREAEVLELAGDGAPIAEIAERASLSQGTVRNYLSSA 181

Query: 225 MRKTATKTRSGAIAYAVRNN 244
             K   + R  A+  A    
Sbjct: 182 ASKLGAENRHTAVRLARERG 201


>gi|114707721|ref|ZP_01440616.1| probable two-component response regulator [Fulvimarina pelagi
           HTCC2506]
 gi|114536965|gb|EAU40094.1| probable two-component response regulator [Fulvimarina pelagi
           HTCC2506]
          Length = 229

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 4/158 (2%)

Query: 83  PFDL-VRCMALSEKDKYYNVLQ-RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
            FDL +  + +     +  +L+ R      P+      +          Y +  F V++ 
Sbjct: 49  SFDLALLDLTMPGVSGFEGLLELRARFPKLPILVVSALDDPKIVRRVLSYGAAGF-VSKS 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L L      ++      +  L+A    +     D    +   LT +++  L+ I +G
Sbjct: 108 AKKLDLATAITEVLSGSVYVQDELIANGPEDH-PDVDSLASRVASLTPQQLRVLSMIRQG 166

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             + +IA  L +   TV  +++ I+RK    +R+ A+ 
Sbjct: 167 LLNKQIAYELSVGETTVKAHVSEILRKLNVFSRTQAVI 204


>gi|315919533|ref|ZP_07915773.1| transcriptional regulator [Bacteroides sp. D2]
 gi|313693408|gb|EFS30243.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 224

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDV------- 178
           R+   + +++   I  M +     +IL++   E     L+       F  + +       
Sbjct: 88  RWILFSNELSEDFIRRMSIERNIGMILKENSGEEIHSALMCTAHGERFLCHQITNLLIIG 147

Query: 179 --HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT  E++ L  I+ GK+  EIA+    S +T+  +  +I RK        A
Sbjct: 148 SDKPEIHSVLTVTEIDILKLIAHGKSVKEIALERTSSIHTIITHKKNIFRKLGVNNVYEA 207

Query: 237 IAYAVRNNIV 246
             Y +R  ++
Sbjct: 208 TKYTLRAGLI 217


>gi|308375441|ref|ZP_07443925.2| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu007]
 gi|308377704|ref|ZP_07480116.2| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu009]
 gi|308346320|gb|EFP35171.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu007]
 gi|308354891|gb|EFP43742.1| putative transcriptional regulator, LuxR family [Mycobacterium
           tuberculosis SUMu009]
          Length = 299

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT  E + +  ++EG  + +IA  L +S  TV  ++  I  K    +R   +  A ++
Sbjct: 240 LTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQLVQEAAQH 297


>gi|326781270|ref|ZP_08240535.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
 gi|326661603|gb|EGE46449.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus
           XylebKG-1]
          Length = 955

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             ++        G    L+ RE       S G ++ EIA  L +S  TV +++A  +RK 
Sbjct: 872 HGHVTVRRPGALGYGDHLSPRERAVARLASVGLSNREIARELVLSHRTVEHHVARALRKL 931

Query: 229 ATKTRSG 235
              +R+ 
Sbjct: 932 GASSRTE 938


>gi|134288318|ref|YP_001110481.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134132968|gb|ABO59678.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 353

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 14/154 (9%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-----DNRYCSLTFDVARIRIGL 144
           ++L   D+      R  +L   V  +     T  A       +     +   +   + G 
Sbjct: 205 ISLYRSDRTAQFTPRDVQLLEHVMQSFVFGSTVCALRRRLPTERLSRVIPEALQEQQTGF 264

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             + P+ + +          ++          +        LT +E++     ++G T  
Sbjct: 265 GSVNPQTKEVAGQE------VSNGAGTQLPCSNAPLD---GLTPKELQVSRLFAQGMTYK 315

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            IA  LG+S  TV +++ SI  K +   ++    
Sbjct: 316 AIAKQLGMSPATVRHHLRSIYTKLSINNKTQIAR 349


>gi|126641820|ref|YP_001084804.1| transcriptional activator [Acinetobacter baumannii ATCC 17978]
 gi|126387704|gb|ABO12202.1| transcriptional activator [Acinetobacter baumannii ATCC 17978]
          Length = 87

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 36/78 (46%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            E  +L   +    ++  +     + LT RE E +  +S+G +  E+A +LGI   T+  
Sbjct: 5   REKRILTLLEPYFTQALPLDLSTQYGLTPREQEVVHLVSKGLSDKEVASLLGIGFTTLRT 64

Query: 220 YIASIMRKTATKTRSGAI 237
           ++ + MRK     R+   
Sbjct: 65  HLNNSMRKIGCNNRTEMA 82


>gi|315639869|ref|ZP_07895000.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315484294|gb|EFU74759.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 211

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R ++    +  G+  A  +++  S D     +  LT RE E L  I+ G ++ EIA  L 
Sbjct: 116 RTVMNGGRYYTGINEADLSHLPHSDDEDQCYET-LTKREKELLPLIALGYSNKEIASQLF 174

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  T+  +  +I +K A       + Y V+++++
Sbjct: 175 LSVKTIEVHKTNIRKKLAINHYPELLRYCVKHHLI 209


>gi|282862117|ref|ZP_06271180.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282563142|gb|EFB68681.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 905

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +R  L+        +  DR       A    +              LT ++     ++
Sbjct: 801 GPLRDALVAFQRCSARVWADRAGGELRAAGEAVDTPDRDGRGSAPLTGLTPQQQRIARYV 860

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +EG T+ E+AV L +S  TV++++ ++      ++R+    
Sbjct: 861 AEGATNREVAVRLSVSPRTVDHHLRNVFAALGVRSRTELAR 901


>gi|205354044|ref|YP_002227845.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858383|ref|YP_002245034.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|205273825|emb|CAR38822.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206710186|emb|CAR34543.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326629158|gb|EGE35501.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 227

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E +  + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 162 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 215


>gi|126347782|emb|CAJ89500.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
           23877]
          Length = 395

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V   + + LT RE+E    I+ G  + EIA  L IS +TV +++ ++  K    +R   +
Sbjct: 325 VLIAEAYGLTSRELEITQLITRGLPTTEIAATLFISPHTVRDHLKAVFGKAGVSSRGELV 384

Query: 238 AY 239
           A 
Sbjct: 385 AR 386


>gi|90418016|ref|ZP_01225928.1| two component response regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337688|gb|EAS51339.1| two component response regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 250

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              ++ +    +   LT R+ E    +++G ++ +IA  LG+S   V  ++A ++R    
Sbjct: 133 PRVRAGERPDPQRVSLTARQAEVWNHLAKGASNKQIARSLGLSEGAVKAHVAGLLRLLGA 192

Query: 231 KTRSGAIAYA 240
           + R+ A+  A
Sbjct: 193 RNRTEALVRA 202


>gi|282853480|ref|ZP_06262817.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582933|gb|EFB88313.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922223|gb|EFS86054.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965305|gb|EFT09404.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|315104424|gb|EFT76400.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327329402|gb|EGE71162.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1]
          Length = 206

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L     G +   IA  L +S  TV N+++S + KT    R+ A   A    
Sbjct: 145 PLSDREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARHRG 204


>gi|227833142|ref|YP_002834849.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182367|ref|ZP_06041788.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454158|gb|ACP32911.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 202

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D+ +  D  L+ RE E    +  G  S +IA  L +S  TV N++++IM KT    R 
Sbjct: 131 AQDILFTPDNPLSDREAEVCRLLLRGLGSADIASQLHLSGGTVRNHVSAIMAKTRAGNRF 190

Query: 235 GAIAYAVRNNIV 246
            A   A  N  +
Sbjct: 191 EAARRAEANGWI 202


>gi|227495872|ref|ZP_03926183.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226834549|gb|EEH66932.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 217

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 5/171 (2%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-----GMDN 128
           LD +  +    + VR   L   D     LQ P      V + L E +           D+
Sbjct: 35  LDVVAEAGSRAEAVRRAELVRPDVVLVDLQLPDGTGIEVMNDLRETVREALPIVLTSFDD 94

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                    A  R  L+       I    R    G +   +  + +    H     +LT 
Sbjct: 95  DEALAEALEAGARAYLLKTVHGAEISDVVRAVAAGRVLLDERTVTRRRADHDDPTADLTN 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            E + L  I +G ++ EI   LG++  TV N+I +++ K   + R+   A+
Sbjct: 155 AERKVLELIGDGLSNREIGERLGVAEKTVKNHITALLAKMGLQRRTQVAAW 205


>gi|90411221|ref|ZP_01219233.1| transcriptional regulator MalT [Photobacterium profundum 3TCK]
 gi|90327750|gb|EAS44081.1| transcriptional regulator MalT [Photobacterium profundum 3TCK]
          Length = 902

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             +  ++R   +     +   +    DV    +   LT RE + L  I  G ++++IA  
Sbjct: 803 REMTSKERNRSVHFDENFVEKLLNLPDVPELIRTSPLTQREWQVLGLIYAGFSNEQIASE 862

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L ++  T+  +I ++ +K     R  AI  A
Sbjct: 863 LDVASTTIKTHIRNLYQKLNIANRQQAIDTA 893


>gi|119387054|ref|YP_918109.1| two component LuxR family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119377649|gb|ABL72413.1| two component transcriptional regulator, LuxR family [Paracoccus
           denitrificans PD1222]
          Length = 206

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 17/183 (9%)

Query: 66  WDLFQEQKLDSIVSSDWP-FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +F++  L  IV+   P  DL    + +E D    V   P      +     +     A
Sbjct: 12  HPVFRD-GLRRIVARLVPGADLFEAASFAEVDALAKVGGAPAAFLLDLLFPGFDPEHGIA 70

Query: 125 GMDNRYCSLTFDV--------------ARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQ 169
            +   Y   T  V                   G +        + R  RL   G +   Q
Sbjct: 71  ALRRDYPRATIIVISMVDDDRTVARVMQAGADGFIGKAVTPEEVARAIRLIREGEVVIRQ 130

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           ++          +   L+ R+ E L  I+ G ++ EIA  L IS  TV  ++++I+R   
Sbjct: 131 SSGGPLPAAPDDRIEALSPRQKEVLRLIARGASNKEIARELEISPFTVRIHVSAILRVLE 190

Query: 230 TKT 232
             T
Sbjct: 191 VPT 193


>gi|205357190|ref|ZP_02345732.2| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323376|gb|EDZ11215.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 248

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E +  + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 183 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 236


>gi|194468755|ref|ZP_03074739.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205358488|ref|ZP_02656765.2| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194455119|gb|EDX43958.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333746|gb|EDZ20510.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 248

 Score = 71.9 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT +E E +  + EG ++  IA  L IS +TV  ++ +I  KT    R+  ++ 
Sbjct: 183 LTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSR 236


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.140    0.381 

Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,395,017,841
Number of Sequences: 14124377
Number of extensions: 214157584
Number of successful extensions: 658405
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 28444
Number of HSP's successfully gapped in prelim test: 2824
Number of HSP's that attempted gapping in prelim test: 627999
Number of HSP's gapped (non-prelim): 31864
length of query: 246
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 111
effective length of database: 2,936,002,735
effective search space: 325896303585
effective search space used: 325896303585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.7 bits)
S2: 79 (35.0 bits)